Citrus Sinensis ID: 043655

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510--
Protein Sequence
METRSAKRRKLYFSENDQCDNGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCTGHCNYRDSLRRQKVRSQMMGFSWASSNARIAFH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHcccccccccccEEEccccccccccccccccccccccccccccHHHHHHHHHHcccccccEEEEEEEEcccHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccEEEEcccccccccccccccccccccccEEEEEEEEEEccccccccccccccccccEEEEccccccccEEEEcccccEEEEEcccccccEEEEcccccEEEEEEEEcccccccEEEEEccccEEEEEEEcccccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHcccccEEEEEEEccEEEEEccccccccccccccccEEEEEEccccccHHHHHHHHHHcccccEEEEEEEEcccccccccccccccccccHHHHHHHcccccccccccccEEEEEEEEEccHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHHHccccccccccEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHcHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccEEEcccEEEEEEEccEEEccccccccccccccccEEEEEEEEEEcccccccccccccccccEEEEEEccHHHHHHHHHcccHHHEEEEEEccccEEEEEEccccEEEEEEEcccccccccEEEEEcccEEEEEEEcccccccEEEEcccccEEEEEEEEEccccccccHHHHHHHHHHHHHccEEEEEcccHHEEEcccccccccccccccEEEEEEcccccccHHHHHHHHHccccccEEEEEEccccccccccccccccccccccccccccccccccHHHHHHEEEEEEEcccccHHHHHHHHHHHHHcHHHcEEEEEEcccccccHHHHHHHHHHHHcccccccccEEEEc
Coil and Loop (DISEMBL)
metrsakrrklyfsendqcdngidrisdlPDAILHHILFLLPIKSIAQTCTLSKRWrslwcsfpdldfntinplaissgkyntssgakrprfislkeMDLISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEeldievatddyfnlprcvitsdslRVFKLRsryrgfrlppssvvaggfrSLHTLSLSLVILFnqpclldlftdssfphlkkldldacyglKQLKVGCRALedltldnciqlcgldifgtklerlRVASCFdaycdkswvkidaskLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLsharsltlespcieilsnrnyftnlhtftnlkslelhtgfnkhnvqglaclfrsspsIHTLILKIINDYKIQRRQWNRDLWDMYTSEEEQYWQSQSQtlkpflnnlnVVEIHGFLECENEVSLAKFLLKHGKALQEMTLctghcnyrdslRRQKVRSQMMgfswassnariafh
Flexible Loop (DISEMBL)
metrsakrrklyfsendqcdnGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAissgkyntssgakRPRFISLKEMDLISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIevatddyfnlprcvitsdslrvFKLRSryrgfrlppssvvagGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCTGHCNYRDSLRRQKVRSQMmgfswassnariafh
Low Complexity Region (SEG)
METRSAKRRKLYFSENDQCDNGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTseeeqywqsqsqTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCTGHCNYRDSLRRQKVRSQMMGFSWASSNARIAFH
Disordered region (IsUnstruct)
************F***DQCDNGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGKYN*******PRFISLKEMDLISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCTGHCNYRDSLR***********************
Disordered Region (DISOPRED)
***************************DLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCTGHCNYRDSLRRQKVRSQMMGFSWASSNARIAFH
Disordered Region (DISEMBL)
********RKLYFSENDQCDNGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSE********SQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCTGHCNYRDSLRRQKVRSQMMGFSWASSNARIAFH
Disordered Region (DISPRO)
***********************DRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCTGHCNYRDSLRRQKVRSQMMGFSWASSNARIAFH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METRSAKRRKLYFSENDQCDNGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCTGHCNYRDSLRRQKVRSQMMGFSWASSNARIAFH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	512	2.2.26 [Sep-21-2011]
Q9ZR09	498	Putative F-box/FBD/LRR-re	yes	no	0.966	0.993	0.514	1e-132
Q0V7P8	459	FBD-associated F-box prot	no	no	0.761	0.849	0.237	2e-16
Q9FNI8	466	FBD-associated F-box prot	no	no	0.773	0.849	0.25	1e-15
Q1PED9	388	F-box/LRR-repeat protein	no	no	0.667	0.881	0.241	2e-15
Q9LX47	504	Putative F-box/FBD/LRR-re	no	no	0.804	0.817	0.252	8e-15
Q9ZV94	452	Putative F-box/FBD/LRR-re	no	no	0.619	0.701	0.249	8e-15
Q94B46	468	F-box/LRR-repeat protein	no	no	0.640	0.700	0.265	3e-14
Q9LZ15	456	Putative F-box/LRR-repeat	no	no	0.75	0.842	0.237	4e-14
Q9LV26	456	Putative F-box/LRR-repeat	no	no	0.738	0.828	0.247	5e-14
Q9LSJ3	465	Putative F-box/LRR-repeat	no	no	0.759	0.836	0.246	6e-14

>sp|Q9ZR09|FDL25_ARATH Putative F-box/FBD/LRR-repeat protein At4g03220 OS=Arabidopsis thaliana GN=At4g03220 PE=4 SV=1

 Score =  473 bits (1218), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/515 (51%), Positives = 345/515 (66%), Gaps = 20/515 (3%)

Query: 1   METRSAKRRKLYFSENDQCDNGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLW 60
           METRS KR+K    E       +DRIS+LPD++ H IL LLP+KS AQ   LSKRWRSL+
Sbjct: 1   METRSVKRKKKKKEEEANWFIRVDRISNLPDSLNHQILLLLPLKSAAQASLLSKRWRSLF 60

Query: 61  CSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFR 120
            S PDLDF +IN L             K P+  S   +  +  + S RD ++ +R LRFR
Sbjct: 61  LSLPDLDFTSINDL-------------KNPKSFSSNSIYKVLSLRSHRDSNN-LRSLRFR 106

Query: 121 AHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLP 180
             ++F+ LN LIR A+ H V++LDIEV T DYFN PR ++TS +LR   L+S   GFRLP
Sbjct: 107 VPVTFTSLNSLIRLAVTHQVQDLDIEVTTKDYFNFPRWIVTSQNLRALTLKSANLGFRLP 166

Query: 181 PSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRA 240
           PSS   GGF+ L +LSLS VIL NQPCL D FTD SFP L+KL L+ C+GLK+LKV CR 
Sbjct: 167 PSSSARGGFQKLTSLSLSRVILHNQPCLSDFFTDPSFPLLEKLTLECCFGLKELKVSCRL 226

Query: 241 LEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS 300
           L++ +L N +QL GL++ G KL++L+V SCF +Y +KS+VKI+   LK   W  NA+T S
Sbjct: 227 LQEFSLKNSLQLEGLEVSGNKLQKLKVESCFYSYSEKSFVKINTPNLKTFLWNSNAVTTS 286

Query: 301 SS-LENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNY 359
              L+ L  L +A V     H+DL S ++QS+   LSGL H+  L L +  +EILS++  
Sbjct: 287 VHFLDKLVCLRKAFVKVFWHHQDLNS-QIQSLFTLLSGLCHSYKLQLGNQSVEILSSKKG 345

Query: 360 FTNLH--TFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRD 417
               H   F N++ LEL T  N+HNVQ L+CLF+S P ++ L +KII+D   +RRQWN+D
Sbjct: 346 LLKNHLLPFHNMRFLELQTRLNRHNVQTLSCLFKSCPMLNILTVKIIDDQTSERRQWNKD 405

Query: 418 LWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTL 477
           LWDM  S E QYW+SQ+  L+ FLN+L  VEIHGF+ECENE+SLA FLL+HGKAL +MTL
Sbjct: 406 LWDMSNS-EIQYWESQAYELESFLNHLEFVEIHGFVECENEMSLAIFLLRHGKALIKMTL 464

Query: 478 CTGHCNYRDSLRRQKVRSQMMGFSWASSNARIAFH 512
            +     RDSLRRQ +RSQ+ GFS ASS A+I+FH
Sbjct: 465 RSSFL-CRDSLRRQMIRSQLTGFSMASSKAKISFH 498

Arabidopsis thaliana (taxid: 3702)

>sp|Q0V7P8|FBD15_ARATH FBD-associated F-box protein At5g27750 OS=Arabidopsis thaliana GN=At5g27750 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 116/488 (23%), Positives = 198/488 (40%), Gaps = 98/488 (20%)

Query: 22  GIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGKY 81
           G DRIS+LP++++  IL  LP K   +T  LS RW++LW + P LD  T +       +Y
Sbjct: 3   GFDRISELPESLITQILLCLPTKDSVKTSVLSTRWKNLWLNVPGLDL-TCSDFPFEDEEY 61

Query: 82  NTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRHNVE 141
                    RF+       + Q   +  K   IR  + R           I  AI   + 
Sbjct: 62  EQVFINFIDRFLEFNPESRL-QTFEVDYKRREIRGFKDR-----------IGTAINRGIR 109

Query: 142 ELDIEVATDDYFN-----------LPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFR 190
            LD  V++  Y+            +P  + TS +L   KLR          S++   G  
Sbjct: 110 LLD-AVSSTMYWEEECIMYPYLEFMPLNLFTSKTLVTLKLRD---------SALNDPG-- 157

Query: 191 SLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCI 250
                      L + PCL        F  L+++       L++L  GC  LEDLTL   +
Sbjct: 158 -----------LLSMPCL-------KFMILREVRWSGTMSLEKLVSGCPVLEDLTLVRTL 199

Query: 251 QLCGLDIFGTKLERLRVASCFDAYCDKSW------------VKIDASKLKVLNWEYNAIT 298
            +C +D     + R+R  S    Y   ++            ++IDA  L+ +  + +   
Sbjct: 200 -ICHIDDDELPVTRVRSRSLKTFYVPLAYGVGCRSRVPDKVLEIDAPGLENMTLKEDHFD 258

Query: 299 ASSSLENLASLH--EASVGFILLH------EDLTSAKLQSVSNFLSGLSHARSLTLESPC 350
               ++NL SL   E ++ F + +      EDL  +K   + +FL+G+S AR + +    
Sbjct: 259 GIV-VKNLTSLFMIELNIKFAVDYRRSFDPEDL--SKRNEIGDFLTGISRARHMIISQKT 315

Query: 351 IEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQ 410
           ++ L + +   ++  F NL    L   F    +  L     S P++  LILKI       
Sbjct: 316 VKALESYSKVGSIPKFNNLS--HLKAVFPSPLLPFLPAFLESFPNLKNLILKI------- 366

Query: 411 RRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLEC-ENEVSLAKFLLKHG 469
                      +  ++E    +     +  ++ L  VEI G  E  E E+ +A++ L++ 
Sbjct: 367 ----------AFAKDDETEELNLINVPRCIVSTLECVEIKGLFEWEEEEMKIARYFLENA 416

Query: 470 KALQEMTL 477
             L+++T+
Sbjct: 417 AVLKKLTM 424

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNI8|FBD32_ARATH FBD-associated F-box protein At5g22730 OS=Arabidopsis thaliana GN=At5g22730 PE=2 SV=2

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 199/480 (41%), Gaps = 84/480 (17%)

Query: 22  GIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLD-----FNTINPLAI 76
           G D IS LPD+++  IL  LPIK I +T +LS RW+SLW   P LD     F   N    
Sbjct: 26  GEDLISKLPDSLITQILLYLPIKDIVRTSSLSSRWKSLWLLIPRLDLDSEEFQDYNAFVG 85

Query: 77  SSGKYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAI 136
              K+   SG ++   I L ++ L S+  ++ D     R + F           ++RR +
Sbjct: 86  FMNKFIDFSGEEK---ICLDKLKLSSRK-TVNDLPCVTRWIDF-----------VVRRKL 130

Query: 137 RHNVEELDIEVATDDYF--NLPRCVITSDSLRVFKLR----SRYRGFRLPPSSVVAGGFR 190
           +H    LD+E   +  F   +P  +   D+L   +L      ++    LP          
Sbjct: 131 KH----LDVECLVNRKFLEEMPLSLYVCDTLVNLRLHRVLLGKFEAVSLP---------- 176

Query: 191 SLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDN 248
            L T+ L   +  N   L  L   SS P LK L +   +   +K L+V    L  L +D 
Sbjct: 177 CLKTMRLEENVYANDVVLESLI--SSCPVLKDLIILRMFEDNVKVLRVHSLTLTSLNIDF 234

Query: 249 CIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLAS 308
                    FG   E       FD     S V IDA +LK L ++ + ++ S  + N  S
Sbjct: 235 N--------FG---EGDDFVDGFDKKV--SGVLIDAPRLKYLKFQ-DDLSGSKIITNSGS 280

Query: 309 LHEASVGFILLHEDLTSA----KLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLH 364
           L + +V ++    D        +   V NFL+ +S    + +    +E L     F  L 
Sbjct: 281 LAKVNVVYVFNENDCADVVDIPRRNMVRNFLTSISGVSDMKISQHFVEFLYYYKDFDPLP 340

Query: 365 TFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTS 424
            F NL  L+       + ++ L  +  S P++ +L++                + + Y  
Sbjct: 341 QFCNLSRLKAEISL--YFLEILPTILESCPNLKSLVM----------------VLEFYLQ 382

Query: 425 EEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTL---CTGH 481
           EE++     S   +  +++L  VEI  F     ++ +A++ L++   LQ++ L   C+ H
Sbjct: 383 EEDEPIIFSSVP-RCLVSSLESVEIKKFNGRPAKMEVARYFLENSGVLQKLVLHLRCSTH 441

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PED9|FBL63_ARATH F-box/LRR-repeat protein At3g59190 OS=Arabidopsis thaliana GN=At3g59190 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 174/398 (43%), Gaps = 56/398 (14%)

Query: 24  DRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGKYNT 83
           D IS+LPDA+L H+L  LP    A T  L+KRWR L    P+LD + +         Y+ 
Sbjct: 12  DIISNLPDALLCHVLSFLPTTEAASTSVLAKRWRFLLAFVPNLDLDNM--------IYDR 63

Query: 84  SSGAKRPRFISLKEMDL-ISQVLSIRDKHSYIRV-LRFRAHLSFSCLNGLIRRAIRHNVE 141
               +R R    K   L + +V++++      +  LR +     S +NG + + +   VE
Sbjct: 64  PKMGRRKRLELRKSFKLFVDRVMALQGNAPLKKFSLRCKIGSDPSRVNGWVLKVLDRGVE 123

Query: 142 ELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVI 201
           ELD+ +A++  + LP  V+ + +L   K+ S    F +          ++LH  ++S   
Sbjct: 124 ELDLYIASEYEYPLPPKVLMTKTLVSLKV-SGTDEFTIDVGEFFLPKLKTLHLSAIS--- 179

Query: 202 LFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGLDIFGTK 261
                     F D   P   KL + AC+ L++L V  + + D       + C +      
Sbjct: 180 ----------FGDEGGPPFAKL-ISACHALEEL-VMIKMMWDYW-----EFCSVS--SPS 220

Query: 262 LERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHE 321
           L+R+ +  C +   +   V  D   L  L +  + +       N  SL EAS+G  +  +
Sbjct: 221 LKRVSI-DCENIDENPKSVSFDTPNLVYLEFT-DTVAVKYPKVNFDSLVEASIGLRMTPD 278

Query: 322 DLTSA-------------KLQSVSNFLSGLSHARSLTLESPCIEILSNRNYF---TNLHT 365
            +  A             K  + ++F+ G+ + +++ L S  +E+L+    F     +  
Sbjct: 279 QVFDARDLVNRHHGYKRCKGANAADFMMGVCNVKTMYLSSEALEVLT----FCCKKAIPV 334

Query: 366 FTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI 403
           F NL  L + T   + + + L  L ++ P++ TLI ++
Sbjct: 335 FNNLIHLTVETD-ERVDWESLPILLKNCPNLETLIFEV 371

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX47|FDL46_ARATH Putative F-box/FBD/LRR-repeat protein At3g59240 OS=Arabidopsis thaliana GN=At3g59240 PE=4 SV=1

 Score = 82.4 bits (202), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 125/495 (25%), Positives = 204/495 (41%), Gaps = 83/495 (16%)

Query: 24  DRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFN----TINPLAISSG 79
           D ISDLP+A++ H+L  +P K  A T  LS++WR L+   P LDF+      +PL   + 
Sbjct: 8   DIISDLPEALICHLLSFVPTKEAALTSLLSEKWRYLFAFAPILDFDDSVWMQSPLVYMNE 67

Query: 80  KYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRV-LRFRAHLSFSCLNGLIRRAIRH 138
            +              K MD + +VL ++   + +R  L  R  +   C+   I   I  
Sbjct: 68  VHR-------------KFMDFVDRVLGLQGNSTLVRFSLNCRNGIDRECIFRWISNVIER 114

Query: 139 NVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLS 198
            V +LD+        ++P  V  S SL   ++R+                          
Sbjct: 115 GVSDLDLGGNFVSNRSMPSSVFVSKSLVKLRIRT-------------------------- 148

Query: 199 LVILFNQPCLLDLFTDSSFPHLKKLDL--------DACYGLKQLKVGCRALEDLTLDNCI 250
                 + C +    D   P LK LDL        D C  L +L  GC+ LEDLT+ +  
Sbjct: 149 ------ENCTIIDLEDVFLPKLKTLDLSSIWFRDGDTC--LLKLISGCQVLEDLTMSDLW 200

Query: 251 --QLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASS-SLENLA 307
                   +    L+RL V  C D   D+S   I      ++ +EY  + A    + N  
Sbjct: 201 WDGYWNRSMSSKTLKRLTV-HCSDW--DRSPGSISFDTPNLVYFEYFDLVADKYEVVNFD 257

Query: 308 SLHEASVGFILLHEDLTSAK----LQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNL 363
           SL EAS+G  + H     A     + + +N   G+S+ R L L S  +E+L+       +
Sbjct: 258 SLVEASIGLRMRHHQRAHASYGDLVVNATNLFMGISNVRILQLFSNALEVLT--FCCAPI 315

Query: 364 HTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYT 423
             F  L  L + T       + L  L ++ P++ TL+ K ++     + Q + D     +
Sbjct: 316 PVFKKLIHLTVETD-KDVGWESLPALLKNCPNLETLVFKGLHHRSTSKCQ-DTDGCLCKS 373

Query: 424 SEEEQYWQSQSQTLKPFLNNLNVVEIHGFL-ECENEVSLAKFLLKHGKALQEMTLCTGHC 482
           S++ +   S S      L  L   E+  +  + E ++ L K+ L+    L++M L   H 
Sbjct: 374 SKDIRSCLSSSPV--KVLKILKFGEVASYFGDEEKQLELVKYFLETMPNLEQMIL---HY 428

Query: 483 NYRDSLRRQKVRSQM 497
           N R S   + V+SQ+
Sbjct: 429 NTRIS---EGVKSQL 440

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV94|FDL11_ARATH Putative F-box/FBD/LRR-repeat protein At1g78760 OS=Arabidopsis thaliana GN=At1g78760 PE=4 SV=1

 Score = 82.4 bits (202), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 179/401 (44%), Gaps = 84/401 (20%)

Query: 24  DRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGKYNT 83
           DR+S+LP++++  I+  +P K + ++  LSKRWR+LW   P L+            +YN 
Sbjct: 16  DRLSNLPESLICQIMLNIPTKDVVKSSVLSKRWRNLWRYVPGLNV-----------EYN- 63

Query: 84  SSGAKRPRFISLKEMDLISQVLSIRDKHSYIR-VLRFRAHLSFSCLNGLIRRAIRHNVEE 142
                  +F+               D ++++  V RF A    SC        +R++ +E
Sbjct: 64  -------QFL---------------DYNAFVSFVDRFLALDRESCFQSF---RLRYDCDE 98

Query: 143 LDIEVATDDYFNLPRC--VITSDSLRVFKLRSRYRG---FRLPPSSVVAGGFRSLHTLSL 197
            +  ++     N+ R   ++    L+V  +     G    ++PPS        SL +L L
Sbjct: 99  EERTIS-----NVKRWINIVVDQKLKVLDVLDYTWGNEEVQIPPSVYTC---ESLVSLKL 150

Query: 198 SLVILFNQPCLLDLFTDSSFPHLKKLDLDA-----CYGLKQLKVGCRALEDLTLD----- 247
             VIL N   +       S P +K ++LD         L+++   C ALE L +      
Sbjct: 151 CNVILPNPKVI-------SLPLVKVIELDIVKFSNALVLEKIISSCSALESLIISRSSVD 203

Query: 248 --NCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLEN 305
             N +++    +   K     + +C D + D+  V IDA KL+ LN   ++ TA   ++N
Sbjct: 204 DINVLRVSSRSLLSFK----HIGNCSDGW-DELEVAIDAPKLEYLNISDHS-TAKFKMKN 257

Query: 306 LASLHEASVGFILLHEDLT----SAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFT 361
             SL EA +  I   E+L       K + + +FL+ +S  + L + S  +E++   +   
Sbjct: 258 SGSLVEAKINIIFNMEELPHPNDRPKRKMIQDFLAEISSVKKLFISSHTLEVI--HDLGC 315

Query: 362 NLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK 402
            L  F NL S  LH  F  H ++ L+   +S P++ +L+++
Sbjct: 316 ELPLFRNLSS--LHIDFEDHTLKMLSTFLQSCPNVKSLVVE 354

Arabidopsis thaliana (taxid: 3702)

>sp|Q94B46|FBL74_ARATH F-box/LRR-repeat protein At4g14096 OS=Arabidopsis thaliana GN=At4g14096 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 158/392 (40%), Gaps = 64/392 (16%)

Query: 24  DRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGKYNT 83
           D IS LP+AI  HIL  LP K  A T  LSK+WR L+   P+LD +        S   N 
Sbjct: 8   DIISSLPEAISCHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLD-------ESVYLNP 60

Query: 84  SSGAKRPRFISLKEMDLISQVLSIRDKHSYIRV-LRFRAHLSFSCLNGLIRRAIRHNVEE 142
            +  +    +S   MD + +VL+++      +  L+    +    +   I   +   V +
Sbjct: 61  ENETE----VSSSFMDFVDRVLALQGNSPLHKFSLKIGDGVEPDRIIPWINNVLERGVSD 116

Query: 143 LDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVIL 202
           LD+ V  +  F  P  +  S                           ++L  L L L  L
Sbjct: 117 LDLHVYMETEFVFPSEMFLS---------------------------KTLVRLKLMLYPL 149

Query: 203 FNQPCLLDLFTDSSFPHLKKLDLDACY------GLKQLKVGCRALEDLTLDNCIQLCGLD 256
                    F D   P LK L +D+CY      GL +L  GC  LEDL LD+ I  C  D
Sbjct: 150 LE-------FEDVYLPKLKTLYIDSCYFEKYGIGLTKLLSGCPILEDLVLDD-IPWCTWD 201

Query: 257 IFGTK---LERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEAS 313
                   L+RL  ++       KS V ID   L  L +  + +       N  SL EA 
Sbjct: 202 FASVSVPTLKRLTFSTQVRDEFPKS-VSIDTPNLVYLKFT-DTVAGKYPKVNFDSLVEAH 259

Query: 314 VGFILLHEDLTSAKLQSVSN---FLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLK 370
           +   LL       +   V N   F+  + + ++L L S  +++L+       +  F NL 
Sbjct: 260 IDLRLLQGHQGYGENDMVGNATDFIMRICNVKTLYLSSNTLQVLTYS--CDAIPIFNNLT 317

Query: 371 SLELHTGFNKHNVQGLACLFRSSPSIHTLILK 402
            L + +   +   Q L  L ++SP++ TLI +
Sbjct: 318 HLTIESN-PEVGWQSLPGLLKNSPNLETLIFQ 348

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score = 80.1 bits (196), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 112/472 (23%), Positives = 189/472 (40%), Gaps = 88/472 (18%)

Query: 21  NGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGK 80
           +G D I+ +PD ILHHIL  +P     +T  LS+RWR +WC  P LD      + +  G 
Sbjct: 24  DGADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLD------ITLKHGA 77

Query: 81  YN-TSSGAKRPRFISLK-EMDLISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRH 138
            N T +    P   S K  MDL S  +   D                      I  A+  
Sbjct: 78  MNQTLTSYTAPIITSFKLVMDLNSNTVPQVD--------------------SWIEFALSR 117

Query: 139 NVEELDIEVATDDY---FNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTL 195
           NV+ L + V    Y   +  P     S SL++  +   +  F + P+  V+  ++SL  L
Sbjct: 118 NVQNLSVFVRDFTYSKTYRFPDIFYLSSSLKLLDVTLDF--FDMIPTCTVS--WKSLRNL 173

Query: 196 SLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGL 255
           +L    + ++                         +  +  GC  LE LTLD C  L  L
Sbjct: 174 TLRFCQIPDE------------------------SIHNILSGCPILESLTLDTCRLLERL 209

Query: 256 DIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVG 315
           D+  +K   LR       Y     V I A  +  L   Y++    S++ +++SL EA++ 
Sbjct: 210 DL--SKSPNLRRLDINQQYRRTGPVAIVAPHIYYLRLTYSS--TPSTIVDVSSLSEANLT 265

Query: 316 FI-LLHEDLTSAKLQSVS-NFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLE 373
            I  L   LT+   Q+++   LS   + + LT+    ++ILS             +++L 
Sbjct: 266 IISSLLSPLTADGYQTMALEMLSKFHNVKRLTVGETLLQILSLAELRGVPFPTLKVQTLT 325

Query: 374 LHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEEEQYWQSQ 433
           + T F +  + G++ L ++SP +  L    +  + ++          +Y    +Q W+S 
Sbjct: 326 VKTEFVRSVIPGISRLLQNSPGLKKLRPSTMKMHHLK---------GLY---PDQCWRST 373

Query: 434 SQTLKPFLNNLNVVEIHGFLECENEV-----SLAKFLLKHGKALQEMTLCTG 480
            +            EI+  L C +       S    +L++ K L+ M +  G
Sbjct: 374 CEVFP------TSKEIYKMLGCNDATLKLVASFMDLVLRNAKTLERMVVWLG 419

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV26|FBL45_ARATH Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2

 Score = 79.7 bits (195), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 117/473 (24%), Positives = 192/473 (40%), Gaps = 95/473 (20%)

Query: 22  GIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGKY 81
            +D IS LPD IL HIL  +P K    T  LSKRWR +WC  P L FN            
Sbjct: 29  AVDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSFNDYR--------- 79

Query: 82  NTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFRAHLSF----SCLNGLIRRAIR 137
                          E   I + L+   +++  +++RF  H S       L   I+ A+ 
Sbjct: 80  --------------LEAPFIDETLT---RYTASKMMRFHLHTSLINNVPHLESWIKFAMS 122

Query: 138 HNVEELDIEV--ATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTL 195
            NV+ L +++     + F  P     + SL+                             
Sbjct: 123 RNVDHLSLDLWNQVANKFKFPDFFHINSSLK----------------------------- 153

Query: 196 SLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY----GLKQLKVGCRALEDLTLDNCIQ 251
            L++V+ F+   +           LKKL L  C      +  +  GC  LE LTLD+C  
Sbjct: 154 QLTVVLDFSDTMIAIC--------LKKLYLSTCLLSDESMANILFGCPILESLTLDHCGG 205

Query: 252 LCGLDIFGTKLERLRV--ASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASL 309
           L  LD+  +K  RLR    +C     + + ++I A     L    + +    SL +++SL
Sbjct: 206 LRVLDL--SKSLRLRTLEINCNIWVPELTAMQIVAPHTHCLRLRNSKLPC--SLVDVSSL 261

Query: 310 HEASVGFIL--LHEDLTSAKLQ-SVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTF 366
            EA +   +    + + +  LQ ++   L  L +   LTL    ++ILS           
Sbjct: 262 KEAKLNICIDSFSKTIKADFLQVTLLKMLEKLHNVEKLTLGGNFLQILSVAELRGVPFPM 321

Query: 367 TNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEE 426
             +K L L T   ++ + G+  + ++SP +  L L +  D+  +  ++  D  D+     
Sbjct: 322 FKVKDLTLETVIFQYVIPGIERVLQNSPDLKKLTL-LTKDFYHKPGEYLGDHMDLEGFNL 380

Query: 427 EQYWQSQSQTLKPFLNN--LNVVEIHGFLECENEVSLAKFLLKHGKALQEMTL 477
           +Q W+S+      F N   L+V       E E+ VS  + +LK+ KAL +M +
Sbjct: 381 DQCWKSKYGV---FWNKSCLDV-------ESEHVVSFVELMLKNTKALDKMVV 423

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSJ3|FBL48_ARATH Putative F-box/LRR-repeat protein At3g28410 OS=Arabidopsis thaliana GN=At3g28410 PE=4 SV=2

 Score = 79.3 bits (194), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 117/475 (24%), Positives = 199/475 (41%), Gaps = 86/475 (18%)

Query: 21  NGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGK 80
           +G D I+ +PD ILHHIL  +P     +T  LS+RWR +WC  P LD      + +  G+
Sbjct: 25  DGADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLD------IKLKHGE 78

Query: 81  YN-TSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRHN 139
            N T +    P   S K       V+ + D              +   ++  I  A+  N
Sbjct: 79  TNQTLTSYTAPIITSFK------LVMDLNDN-------------TVPQVDSWIEFALSRN 119

Query: 140 VEELDIEVATDDY---FNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLS 196
           V+ L + V    Y   +  P     S SL+   +   +  F + P+  V+  ++SL  L+
Sbjct: 120 VQNLSVFVRDFTYTKTYRFPDIFYISSSLKQLDVTLDF--FDMIPTCAVS--WKSLRNLT 175

Query: 197 LSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGLD 256
           L     F Q        D S  ++    L  C  L          E LTLD C  L  LD
Sbjct: 176 LR----FCQ------IPDESMHNI----LSGCPIL----------ESLTLDTCRLLERLD 211

Query: 257 IFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGF 316
           +  +K   LR       Y     + I A  +  L   Y++    S++ +++SL EA++  
Sbjct: 212 L--SKSPNLRRLDINRQYRRTGPIAIVAPHIYYLRLTYSS--TPSTIVDVSSLSEANLNI 267

Query: 317 I--LLHEDLTSAKLQSVS-NFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLE 373
           I   L   LT+ + Q+++   LS   + + LT+    ++ILS             +++L 
Sbjct: 268 ISDRLLSPLTADRYQTMALEMLSKFHNVKRLTVGETILQILSLAELRGVPFPTLKVQTLT 327

Query: 374 LHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSE---EEQYW 430
           + T F +  + G++ L ++SP +  L L  +        Q + D+ +M+  +    +Q W
Sbjct: 328 VKTEFVRSVIPGISRLLQNSPGLKKLTLHTL--------QLSHDIMEMHPLKGLYPDQCW 379

Query: 431 QSQSQTLKPFLNNLNVVEIHGFLECENEVS--LAKFL---LKHGKALQEMTLCTG 480
           +S  +            EI+  L C +  S  +A F+   L++ K L+ M +  G
Sbjct: 380 RSTCEVFP------TSKEIYKMLGCNDATSKLVASFMNLVLRNAKTLERMVVWLG 428

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	512
224126859	511	f-box family protein [Populus trichocarp	0.986	0.988	0.719	0.0
255563415	501	conserved hypothetical protein [Ricinus	0.957	0.978	0.699	0.0
356544854	510	PREDICTED: putative F-box/FBD/LRR-repeat	0.990	0.994	0.633	1e-178
358345207	515	F-box family protein [Medicago truncatul	0.980	0.974	0.607	1e-174
225447425	513	PREDICTED: putative F-box/FBD/LRR-repeat	0.996	0.994	0.598	1e-173
297813981	505	F-box family protein [Arabidopsis lyrata	0.919	0.932	0.532	1e-135
15236266	498	putative F-box/FBD/LRR-repeat protein [A	0.966	0.993	0.514	1e-131
449475927	496	PREDICTED: putative F-box/FBD/LRR-repeat	0.949	0.979	0.478	1e-130
449444566	496	PREDICTED: putative F-box/FBD/LRR-repeat	0.949	0.979	0.478	1e-130
296081236	327	unnamed protein product [Vitis vinifera]	0.628	0.984	0.530	4e-95

>gi|224126859|ref|XP_002319944.1| f-box family protein [Populus trichocarpa] gi|222858320|gb|EEE95867.1| f-box family protein [Populus trichocarpa]

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/513 (71%), Positives = 424/513 (82%), Gaps = 8/513 (1%)

Query: 1   METRSAKRRKLYFSENDQCDNGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLW 60
           METRS KR+KL+F+ N++ DN IDRISDLPDAILHHIL LLP+KSIAQT  LS+RWRSLW
Sbjct: 1   METRSTKRKKLWFASNNEGDNDIDRISDLPDAILHHILLLLPLKSIAQTSVLSQRWRSLW 60

Query: 61  CSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFR 120
            SFPDLDF T+NP    S    ++   K  R+     MD I+ VL++RDKHS +R LRFR
Sbjct: 61  SSFPDLDFTTMNP----SKAICSTRKLKSKRW--WPSMDFIANVLALRDKHSDLRALRFR 114

Query: 121 AHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLP 180
           AHLSFS LNGLIRRAIR NV+ELD+EVAT DYFN PR VITS+SLRV KLRSRY GFRL 
Sbjct: 115 AHLSFSHLNGLIRRAIRCNVQELDVEVATGDYFNFPRGVITSESLRVLKLRSRYPGFRLL 174

Query: 181 PSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRA 240
           PSSV+  GF SLHTLSLSLVIL+ Q  LLDLFT+SSFP LK L+LDAC+G+K LKV CRA
Sbjct: 175 PSSVMTIGFPSLHTLSLSLVILYEQSSLLDLFTESSFPCLKNLNLDACFGMKHLKVCCRA 234

Query: 241 LEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS 300
           LEDLT++NC QL  LDI   KLE LRVASCFDAY DK+W K++A +L+ ++WEYN+ITAS
Sbjct: 235 LEDLTIENCFQLHSLDICSAKLENLRVASCFDAYSDKTWFKVNAPRLRGISWEYNSITAS 294

Query: 301 SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYF 360
           SSL NL SLHEASVGF LLHE+L+  KLQSV NFLSGLSH  SLTL+S C+EILSN+N  
Sbjct: 295 SSLVNLTSLHEASVGFSLLHENLSVEKLQSVCNFLSGLSHVHSLTLDSQCVEILSNKNDI 354

Query: 361 TN-LHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLW 419
            N LH F NLK LELHTGF K+NV GLA LFRSSP++HTLILKIIND+K +RRQWNRDLW
Sbjct: 355 INLLHPFNNLKVLELHTGFEKNNVPGLAFLFRSSPTLHTLILKIINDFKTERRQWNRDLW 414

Query: 420 DMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCT 479
           D+ TS EEQYW+SQ Q L+PFL++L VV+IHGFLECENEVSLAKFLLKHGK LQEMTLCT
Sbjct: 415 DLSTSAEEQYWESQLQALRPFLDHLKVVKIHGFLECENEVSLAKFLLKHGKDLQEMTLCT 474

Query: 480 GH-CNYRDSLRRQKVRSQMMGFSWASSNARIAF 511
            + CN++DSLRRQKVRSQ+MGFSWASSNA+I F
Sbjct: 475 ANCCNFKDSLRRQKVRSQIMGFSWASSNAKIVF 507

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563415|ref|XP_002522710.1| conserved hypothetical protein [Ricinus communis] gi|223538060|gb|EEF39672.1| conserved hypothetical protein [Ricinus communis]

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/523 (69%), Positives = 420/523 (80%), Gaps = 33/523 (6%)

Query: 1   METRSAKRRKLYFSENDQCDNG------IDRISDLPDAILHHILFLLPIKSIAQTCTLSK 54
           METRSAKRRKL F+E+  CD G      IDRISDLPD ILHHILFLL +KSIA+T TLSK
Sbjct: 1   METRSAKRRKLPFAES--CDQGGDPPAGIDRISDLPDPILHHILFLLSVKSIARTSTLSK 58

Query: 55  RWRSLWCSFPDLDFNTI---NPLA-ISSGKY-NTSSGAKRPRFISLKEMDLISQVLSIRD 109
           RWRS+W SFPDLDF TI   N LA IS   + NT    KRP   SL  MD ISQVL++RD
Sbjct: 59  RWRSVWYSFPDLDFTTISTANTLANISQTNFLNT----KRPPPHSL-SMDFISQVLALRD 113

Query: 110 KHSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFK 169
           KHS +R LRFRA  SFSCLNGLIR AIRHNV+ELD+EVAT+D+FN PR VITS +LRV K
Sbjct: 114 KHSDLRTLRFRARSSFSCLNGLIRSAIRHNVQELDVEVATEDHFNFPRGVITSKTLRVLK 173

Query: 170 LRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY 229
           L+S Y GFRL PSSV+  GFRSL  LSLSLVIL++Q  LLDLFT+SSFP LKKL+LDAC+
Sbjct: 174 LKSMYPGFRLLPSSVMTDGFRSLQVLSLSLVILYDQSSLLDLFTESSFPRLKKLNLDACF 233

Query: 230 GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKV 289
           GLK LK+ CR LEDLTL+NC QL GL+I   KL++LRVASCFDAY +KSWVKI++  L++
Sbjct: 234 GLKHLKISCRGLEDLTLENCFQLHGLEICCGKLDKLRVASCFDAYYEKSWVKINSPNLRI 293

Query: 290 LNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESP 349
           + WE NAIT +SSLENL SL EASVGF LLHED+++ KLQSV + LSGLS+A SLTLES 
Sbjct: 294 VFWECNAITGTSSLENLTSLREASVGFFLLHEDVSAEKLQSVWDLLSGLSNAYSLTLES- 352

Query: 350 CIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKI 409
             ++LS            NLK L+L TGFNK NV GLA LFRSSP++HTL+LKIIND KI
Sbjct: 353 --DVLS------------NLKILKLETGFNKSNVPGLASLFRSSPALHTLVLKIINDCKI 398

Query: 410 QRRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHG 469
           +RRQWNRDLWDM T++EEQ+W+SQ  TLKPFL++L VV+IHGFLECENEVSLAKFLLKHG
Sbjct: 399 ERRQWNRDLWDMSTTKEEQFWESQIHTLKPFLSHLKVVKIHGFLECENEVSLAKFLLKHG 458

Query: 470 KALQEMTLCTGHCNYRDSLRRQKVRSQMMGFSWASSNARIAFH 512
           K LQEMTLCT  CNYRDSLRRQKVRSQMMGFSWASSNA++AF 
Sbjct: 459 KCLQEMTLCTARCNYRDSLRRQKVRSQMMGFSWASSNAKVAFQ 501

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544854|ref|XP_003540862.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220-like [Glycine max]

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 326/515 (63%), Positives = 386/515 (74%), Gaps = 8/515 (1%)

Query: 1   METRSAKRRKLYFSENDQCDNGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLW 60
           METRSAKR+K+     +      DRISDLPDA+LH ILFLLPIK +AQ   LSKRW+ LW
Sbjct: 1   METRSAKRKKMAQIVENDAKAATDRISDLPDAVLHQILFLLPIKCVAQMSILSKRWKFLW 60

Query: 61  CSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFR 120
            +FPDLDF T+NP  ISS         K  + +    MD I+QVLSIRDKHS IR L FR
Sbjct: 61  STFPDLDFTTLNPFQISSQSVKFLEFEKPRQPLDSSRMDFITQVLSIRDKHSDIRFLCFR 120

Query: 121 AHLSFSCLNGLIRRAIRHNVEELDI---EVATDDYFNLPRCVITSDSLRVFKLRSRYRGF 177
           A LSFS LN LIRRAIRHNV ELDI    V TDDYFN PRCVI S++LRV KL+S   GF
Sbjct: 121 ARLSFSRLNSLIRRAIRHNVRELDIGASTVCTDDYFNFPRCVIGSETLRVLKLKS---GF 177

Query: 178 RLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVG 237
           RLPPSSV+  GF+SL TLSLSLVIL NQP L DLF++SSFP LK L+LD+C GLK L VG
Sbjct: 178 RLPPSSVMRHGFQSLQTLSLSLVILNNQPSLPDLFSESSFPLLKTLNLDSCLGLKYLHVG 237

Query: 238 CRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAI 297
           CRALEDL L+ C +L GLD+  +KLER+R+A CFDAY DKSWVKI+  KL+ L W++NAI
Sbjct: 238 CRALEDLNLERCYELEGLDVSCSKLERMRLAKCFDAYSDKSWVKINTPKLERLCWQHNAI 297

Query: 298 TASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNR 357
           T  +       L+E +VGF +   D    KLQS  + LSGLSHARSL+LE   IEILSN 
Sbjct: 298 TDMTMFGPSNLLNEVTVGFYVFTRDNILGKLQSAIDLLSGLSHARSLSLERQTIEILSNN 357

Query: 358 NYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRD 417
           +       F NLK LELHTGFNK +V GL CLF+SSP++ TLILKII++Y+I+R++WNRD
Sbjct: 358 HLL--FQPFYNLKHLELHTGFNKSDVPGLTCLFKSSPTLDTLILKIIHEYRIERKEWNRD 415

Query: 418 LWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTL 477
           LWDM  +E EQYW+SQ +TL+ FL +L VV+IHGFL+ ENEV+LAKFLLKHGKAL+EM L
Sbjct: 416 LWDMTITEGEQYWESQIRTLESFLQHLKVVKIHGFLDYENEVALAKFLLKHGKALEEMIL 475

Query: 478 CTGHCNYRDSLRRQKVRSQMMGFSWASSNARIAFH 512
            TGHCN RD+LRRQK+RSQMMGFSWASSNA++AF 
Sbjct: 476 HTGHCNARDTLRRQKIRSQMMGFSWASSNAKVAFQ 510

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345207|ref|XP_003636673.1| F-box family protein [Medicago truncatula] gi|355502608|gb|AES83811.1| F-box family protein [Medicago truncatula]

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 319/525 (60%), Positives = 392/525 (74%), Gaps = 23/525 (4%)

Query: 1   METRSAKRRKLYFSENDQCDNG-----IDRISDLPDAILHHILFLLPIKSIAQTCTLSKR 55
           METRSAKR+K+   E +Q +N      IDRISDLPD I+H IL LLPIK +AQ   LSKR
Sbjct: 1   METRSAKRKKI---EQEQENNAKSKPLIDRISDLPDDIIHQILLLLPIKCVAQMSVLSKR 57

Query: 56  WRSLWCSFPDLDFNTINPLA-ISSGKYNTSSGAKRPRFISLKEMDLISQVLSIRD-KHSY 113
           W+ LW SFPDLDF T++P   IS+  +     ++ P  +S  ++D I+QVLSIRD KH  
Sbjct: 58  WKFLWTSFPDLDFTTLDPFPLISTKNHKKIDISRHP--LSSSKLDFITQVLSIRDVKHKD 115

Query: 114 IRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEV----ATDDYFNLPRCVITSDSLRVFK 169
           IRVL FRA LSFS LN L+R AIRHNV ELDIEV     T+D+FN PRCVI S+SLRV K
Sbjct: 116 IRVLCFRASLSFSRLNNLVRSAIRHNVRELDIEVHTEVDTEDFFNFPRCVIGSESLRVLK 175

Query: 170 LRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY 229
           L+S   GFRLPPSSV+  GF+SLHTLSLSLVIL+NQP L DLF++SSFP LK L LD C+
Sbjct: 176 LKS---GFRLPPSSVMRNGFQSLHTLSLSLVILYNQPSLSDLFSESSFPRLKNLHLDMCF 232

Query: 230 GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDK-SWVKIDASKLK 288
           GL  L++GCRALEDL L+ C +L GL+I G K+ER+RV SCFDAYCD  +WV+++  KL+
Sbjct: 233 GLTHLRIGCRALEDLNLERCYELQGLEICGGKIERMRVISCFDAYCDNNTWVRLNVPKLE 292

Query: 289 VLNWEYNAITASSSLENLASLHEASVGFILLHE-DLTSAKLQSVSNFLSGLSHARSLTLE 347
            L W++NA+T  +  EN   L+EAS+GF +L E  +   + +S +NF SGLSHA SLTL 
Sbjct: 293 NLIWKFNAVTDVTVFENSNLLNEASIGFFMLREGKVNMGRFESANNFFSGLSHAHSLTLN 352

Query: 348 SPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDY 407
           +  IEILS   +   +  F NLKSLELHT  NK NVQ LACLFRS P++HT  L+IINDY
Sbjct: 353 TQTIEILSKYKFI--IQPFYNLKSLELHTSLNKSNVQALACLFRSCPTLHTFNLEIINDY 410

Query: 408 KIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLK 467
           KI+R+ WNRDLWDM ++EEEQYW+SQ  +LK FL +L VV+I GFL+C NEV+L KFLLK
Sbjct: 411 KIERKLWNRDLWDMTSTEEEQYWESQIPSLKSFLQHLKVVKIKGFLDCANEVTLVKFLLK 470

Query: 468 HGKALQEMTLCTGHCNYRDSLRRQKVRSQMMGFSWASSNARIAFH 512
           HGK L+EM LCTGH N RD+LRRQK++SQMMGFSWASSNA++ F 
Sbjct: 471 HGKGLEEMRLCTGHSNRRDTLRRQKIKSQMMGFSWASSNAKVEFQ 515

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447425|ref|XP_002276216.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220-like [Vitis vinifera]

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 308/515 (59%), Positives = 392/515 (76%), Gaps = 5/515 (0%)

Query: 1   METRSAKRRKLYFSENDQCDNGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLW 60
           METRS+KR++L  ++++     IDRI+ LPDA+LH IL LLPIK+IAQT  LSKRWR LW
Sbjct: 1   METRSSKRKRLLQAQSES-HTAIDRITHLPDAVLHQILLLLPIKTIAQTSVLSKRWRLLW 59

Query: 61  CSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFR 120
            SFPDLDF T+NP  +S   Y  S G +     +   +D ISQ L+   + S IRVLRFR
Sbjct: 60  SSFPDLDFTTLNPHCMSC-YYFDSCGGRSSVSPNPNTLDCISQTLAAHQRGSDIRVLRFR 118

Query: 121 AHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLP 180
           AHL FS LNGLIR AIRHNV++LDI+V TDDYFNLPRCV+ S+SL+   L+ R  GFRLP
Sbjct: 119 AHLGFSRLNGLIRSAIRHNVQDLDIDVCTDDYFNLPRCVVMSESLKALSLKFRPPGFRLP 178

Query: 181 PSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRA 240
           PS V+ GGF+SL TLSLS ++ + +  LLDLF  S+FP L+KL LD+C G+K L VGCR 
Sbjct: 179 PSMVMRGGFQSLQTLSLSHMVFYKKHYLLDLFAGSAFPVLRKLTLDSCRGIKFLDVGCRV 238

Query: 241 LEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS 300
           L+DLT++NC QL GL + G +LERLRV SCF++  +KSWVKI A +L+V++WE+NAIT +
Sbjct: 239 LQDLTVENCFQLHGLTVSGPRLERLRVVSCFESSSEKSWVKIIAPRLRVMHWEHNAITET 298

Query: 301 SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYF 360
           S LENLAS+ EA +GF  L ED  + K +SVSN LSGLSHA  LTL+S CI+ILSN +Y 
Sbjct: 299 SCLENLASMEEAFIGFFALDEDTRAEKYKSVSNILSGLSHAHCLTLQSQCIQILSNNHYS 358

Query: 361 T-NLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQR-RQWNRDL 418
           T +LH F NLK+++LHT  +K+N++GL CLFRSSP++HTLILKII  +K ++ + WN+ L
Sbjct: 359 TISLHPFHNLKTMKLHTVLDKNNIRGLLCLFRSSPTLHTLILKIITHFKAEKTKAWNKAL 418

Query: 419 WD-MYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTL 477
           WD M +SE+EQYW+S+SQT K FL +L VV + G +E ENE+ L KFLLKHG ALQEM L
Sbjct: 419 WDHMSSSEQEQYWESRSQTFKSFLQHLKVVRMEGLVESENEIGLIKFLLKHGMALQEMIL 478

Query: 478 CTGHCNYRDSLRRQKVRSQMMGFSWASSNARIAFH 512
           C+GH N RD +RR ++RSQMMGFSWASSNA++AFH
Sbjct: 479 CSGHSNSRDPVRRHEIRSQMMGFSWASSNAKLAFH 513

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813981|ref|XP_002874874.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297320711|gb|EFH51133.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/496 (53%), Positives = 347/496 (69%), Gaps = 25/496 (5%)

Query: 23  IDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGKYN 82
           +DRIS+LPD+++H IL LLP+KS AQT  LSKRWRSL+ S PDLDF +IN L        
Sbjct: 29  VDRISNLPDSLIHQILLLLPLKSAAQTSLLSKRWRSLFLSLPDLDFTSINDL-------- 80

Query: 83  TSSGAKRPRFISLKEMDLISQVLSIRDKHSY--IRVLRFRAHLSFSCLNGLIRRAIRHNV 140
                K P+ IS    + I +VLS+R+   +  +R LRFRA ++F+ LN LIR A+ H V
Sbjct: 81  -----KNPKSIS---SNSIYKVLSLRNHRDFNNLRSLRFRAPITFTSLNSLIRLAVTHQV 132

Query: 141 EELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLV 200
           ++LDIEV T DYFN PR ++TS  LR  KLRS + GFRLPPSS + GGF+ L +LSLSLV
Sbjct: 133 QDLDIEVTTKDYFNFPRWIVTSQDLRALKLRSSHPGFRLPPSSSILGGFQKLTSLSLSLV 192

Query: 201 ILFN-QPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGLDIFG 259
           IL N QPCL D FTD SFP L+KL+L++C+GLK+LKV CR L++ +L N +QL GL++ G
Sbjct: 193 ILHNHQPCLSDFFTDPSFPLLEKLNLESCFGLKELKVSCRLLQEFSLKNSLQLEGLEVSG 252

Query: 260 TKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSS-LENLASLHEASVGFIL 318
            KL++L+V SCF +Y +KS+VKI+   L+   W  NA+T S   L+ L  L +A V    
Sbjct: 253 NKLQKLKVESCFHSYSEKSFVKINTPNLRTFLWNSNAVTTSVHFLDKLVCLRKAFVKVFW 312

Query: 319 LHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLH--TFTNLKSLELHT 376
           LH+DL S + QS+   LSGL ++  L L +  +EILS++      H   F N++ LEL T
Sbjct: 313 LHQDLNS-QTQSLFTLLSGLCNSYKLQLGNQSVEILSSKKGLLKNHLLPFHNMRFLELQT 371

Query: 377 GFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEEEQYWQSQSQT 436
            F++HNVQ L+CLF+S P ++ L LKIIND   +RRQW++DLW+M  S E QYW+SQ+  
Sbjct: 372 RFSRHNVQTLSCLFKSCPMLNILTLKIINDQTSERRQWDKDLWNMSNS-EIQYWESQTYE 430

Query: 437 LKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCTGHCNYRDSLRRQKVRSQ 496
           L+ FLN+L  VEIHGFLECENE+SLA FLL+HGKAL +MTL +     RDSLRRQ +RSQ
Sbjct: 431 LEAFLNHLEFVEIHGFLECENEMSLAIFLLRHGKALIKMTLRSSFL-CRDSLRRQMIRSQ 489

Query: 497 MMGFSWASSNARIAFH 512
           + GFS ASS A+I+FH
Sbjct: 490 LTGFSMASSKAKISFH 505

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236266|ref|NP_192231.1| putative F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] gi|75267838|sp|Q9ZR09.1|FDL25_ARATH RecName: Full=Putative F-box/FBD/LRR-repeat protein At4g03220 gi|4262150|gb|AAD14450.1| hypothetical protein [Arabidopsis thaliana] gi|7270192|emb|CAB77807.1| hypothetical protein [Arabidopsis thaliana] gi|332656894|gb|AEE82294.1| putative F-box/FBD/LRR-repeat protein [Arabidopsis thaliana]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 265/515 (51%), Positives = 345/515 (66%), Gaps = 20/515 (3%)

Query: 1   METRSAKRRKLYFSENDQCDNGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLW 60
           METRS KR+K    E       +DRIS+LPD++ H IL LLP+KS AQ   LSKRWRSL+
Sbjct: 1   METRSVKRKKKKKEEEANWFIRVDRISNLPDSLNHQILLLLPLKSAAQASLLSKRWRSLF 60

Query: 61  CSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFR 120
            S PDLDF +IN L             K P+  S   +  +  + S RD ++ +R LRFR
Sbjct: 61  LSLPDLDFTSINDL-------------KNPKSFSSNSIYKVLSLRSHRDSNN-LRSLRFR 106

Query: 121 AHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLP 180
             ++F+ LN LIR A+ H V++LDIEV T DYFN PR ++TS +LR   L+S   GFRLP
Sbjct: 107 VPVTFTSLNSLIRLAVTHQVQDLDIEVTTKDYFNFPRWIVTSQNLRALTLKSANLGFRLP 166

Query: 181 PSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRA 240
           PSS   GGF+ L +LSLS VIL NQPCL D FTD SFP L+KL L+ C+GLK+LKV CR 
Sbjct: 167 PSSSARGGFQKLTSLSLSRVILHNQPCLSDFFTDPSFPLLEKLTLECCFGLKELKVSCRL 226

Query: 241 LEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS 300
           L++ +L N +QL GL++ G KL++L+V SCF +Y +KS+VKI+   LK   W  NA+T S
Sbjct: 227 LQEFSLKNSLQLEGLEVSGNKLQKLKVESCFYSYSEKSFVKINTPNLKTFLWNSNAVTTS 286

Query: 301 SS-LENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNY 359
              L+ L  L +A V     H+DL S ++QS+   LSGL H+  L L +  +EILS++  
Sbjct: 287 VHFLDKLVCLRKAFVKVFWHHQDLNS-QIQSLFTLLSGLCHSYKLQLGNQSVEILSSKKG 345

Query: 360 FTNLH--TFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRD 417
               H   F N++ LEL T  N+HNVQ L+CLF+S P ++ L +KII+D   +RRQWN+D
Sbjct: 346 LLKNHLLPFHNMRFLELQTRLNRHNVQTLSCLFKSCPMLNILTVKIIDDQTSERRQWNKD 405

Query: 418 LWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTL 477
           LWDM  S E QYW+SQ+  L+ FLN+L  VEIHGF+ECENE+SLA FLL+HGKAL +MTL
Sbjct: 406 LWDMSNS-EIQYWESQAYELESFLNHLEFVEIHGFVECENEMSLAIFLLRHGKALIKMTL 464

Query: 478 CTGHCNYRDSLRRQKVRSQMMGFSWASSNARIAFH 512
            +     RDSLRRQ +RSQ+ GFS ASS A+I+FH
Sbjct: 465 RSSFL-CRDSLRRQMIRSQLTGFSMASSKAKISFH 498

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449475927|ref|XP_004154591.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220-like [Cucumis sativus]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/520 (47%), Positives = 349/520 (67%), Gaps = 34/520 (6%)

Query: 1   METRSAKRRKLYFSENDQCDN------GIDRISDLPDAILHHILFLLPIKSIAQTCTLSK 54
           METRSA+RR+L  + N    N       +D IS LPDA+LHHIL  LPIK+ AQ+ TLS 
Sbjct: 1   METRSARRRRLSIT-NSHLHNDTSLALAVDYISHLPDALLHHILSSLPIKTAAQSATLSS 59

Query: 55  RWRSLWCSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYI 114
           RWR LW + PDLDF+T +                     S+ ++ +I+++L+ R  HS +
Sbjct: 60  RWRFLWFTLPDLDFSTAS---------------------SISDL-IITRILNSRPHHSNV 97

Query: 115 RVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRY 174
           R+LRF A L+FS LN L R AIRH +++L + VAT+DYFN PRCVI+SDSLRVF LRS +
Sbjct: 98  RLLRFSATLTFSRLNALFRTAIRHQIQQLHLHVATNDYFNFPRCVISSDSLRVFNLRSTH 157

Query: 175 RGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQL 234
            GFRLPP S++  GFRSL++LSL+ ++  ++P L+DLFT++SFP LKKL+L+ C+GL+ L
Sbjct: 158 PGFRLPPPSLMVSGFRSLNSLSLARMVFHDRPSLVDLFTETSFPVLKKLNLERCFGLEHL 217

Query: 235 KVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEY 294
            V C  LED +L  C QL G D+FG KL+ ++V++CFDAY   +WVKI A  L  L+W Y
Sbjct: 218 SVKCPVLEDFSLQLCFQLQGFDVFGAKLQSIKVSNCFDAYTTLTWVKIVAPNLNTLHWIY 277

Query: 295 NAITASSSLENL-ASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEI 353
           NA+T   ++ N  +SL++AS+   LL +   + KL SVS  LS +S A SL L+S C++I
Sbjct: 278 NALTDEINIHNFTSSLNQASLS--LLPQHFVTNKLHSVSALLSAISPAHSLALDSLCVDI 335

Query: 354 LSNRNYFTN-LHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRR 412
           +S+  YF +      N+  LEL T F K N  GLA +FRS   +HTL +KI++   I R+
Sbjct: 336 VSSPTYFAHYFPPLNNVNCLELSTAFRKQNGPGLANIFRSCSLLHTLTIKIVDGGNIGRK 395

Query: 413 QWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKAL 472
            W RD W+   SEEEQ+W++Q + L+ FL +L +V+I GF++C +EVSL +FLLKHG AL
Sbjct: 396 DWRRDKWERSASEEEQFWETQIEPLESFLLHLKIVKIEGFMDCLSEVSLTRFLLKHGSAL 455

Query: 473 QEMTLCTGHCNYRDSL-RRQKVRSQMMGFSWASSNARIAF 511
           Q++TL T    +RDSL RR++++SQ+M F  ASS  ++ +
Sbjct: 456 QQLTLLTTKTKHRDSLIRRREIKSQIMAFPRASSLVKLQY 495

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444566|ref|XP_004140045.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220-like [Cucumis sativus]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/520 (47%), Positives = 348/520 (66%), Gaps = 34/520 (6%)

Query: 1   METRSAKRRKLYFSENDQCDN------GIDRISDLPDAILHHILFLLPIKSIAQTCTLSK 54
           METRSA+RR+L  + N    N       +D IS LPDA+LHHIL  LPIK+ AQ+ TLS 
Sbjct: 1   METRSARRRRLSIT-NSHLHNDTSLALAVDYISHLPDALLHHILSSLPIKTAAQSATLSS 59

Query: 55  RWRSLWCSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYI 114
           RWR LW + PDLDF+T +                     S+ ++ +I+++L+ R  HS +
Sbjct: 60  RWRFLWFTLPDLDFSTTS---------------------SISDL-IITRILNSRPHHSNV 97

Query: 115 RVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRY 174
           R+LRF A L+FS LN L R AIRH +++L + VAT+DYFN PRCVI+SDSLRVF LRS +
Sbjct: 98  RLLRFSATLTFSRLNALFRTAIRHQIQQLHLHVATNDYFNFPRCVISSDSLRVFNLRSTH 157

Query: 175 RGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQL 234
            GFRLPP S++  GFRSL++LSL+ ++  ++P L+DLFT++SFP LKKL+L+ C+GL+ L
Sbjct: 158 PGFRLPPPSLMVSGFRSLNSLSLARMVFHDRPSLVDLFTETSFPVLKKLNLERCFGLEHL 217

Query: 235 KVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEY 294
            V C  LED +L  C QL G D+FG KL+ ++V++CFDAY   +WVKI A  L  L+W Y
Sbjct: 218 SVKCPVLEDFSLQLCFQLQGFDVFGAKLQSIKVSNCFDAYTTLTWVKIVAPNLNTLHWIY 277

Query: 295 NAITASSSLENLAS-LHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEI 353
           NA+T   ++ N  S L++AS+   LL +   + KL SVS  LS +S A SL L+S C++I
Sbjct: 278 NALTDEINIHNFTSTLNQASLS--LLPQHFVTNKLHSVSALLSAISPAHSLALDSLCVDI 335

Query: 354 LSNRNYFTN-LHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRR 412
           +S+  YF +      N+  LEL T F K N  GLA +FRS   +HTL +KI++   I R+
Sbjct: 336 VSSPTYFAHYFPPLNNVNCLELSTAFRKQNGPGLANIFRSCSLLHTLTIKIVDGGNIGRK 395

Query: 413 QWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKAL 472
            W RD W+   SEEEQ+W++Q + L+ FL +L +V+I GF++C +EVSL +FLLKHG AL
Sbjct: 396 DWRRDKWERSASEEEQFWETQIEPLESFLLHLKIVKIEGFMDCLSEVSLTRFLLKHGSAL 455

Query: 473 QEMTLCTGHCNYRDSL-RRQKVRSQMMGFSWASSNARIAF 511
           Q++TL T    +RDSL RR++++SQ+M F  ASS  ++ +
Sbjct: 456 QQLTLLTTKTKHRDSLIRRREIKSQIMAFPRASSLVKLQY 495

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081236|emb|CBI17980.3| unnamed protein product [Vitis vinifera]

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 191/360 (53%), Positives = 244/360 (67%), Gaps = 38/360 (10%)

Query: 1   METRSAKRRKLYFSENDQCDNGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLW 60
           METRS+KR++L  ++++     IDRI+ LPDA+LH IL LLPIK+IAQT   S       
Sbjct: 1   METRSSKRKRLLQAQSES-HTAIDRITHLPDAVLHQILLLLPIKTIAQTSVFSV------ 53

Query: 61  CSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFR 120
                    + NP        NT              +D ISQ L+   + S IRVLRFR
Sbjct: 54  ---------SPNP--------NT--------------LDCISQTLAAHQRGSDIRVLRFR 82

Query: 121 AHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLP 180
           AHL FS LNGLIR AIRHNV++LDI+V TDDYFNLPRCV+ S+SL+   L+ R  GFRLP
Sbjct: 83  AHLGFSRLNGLIRSAIRHNVQDLDIDVCTDDYFNLPRCVVMSESLKALSLKFRPPGFRLP 142

Query: 181 PSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRA 240
           PS V+ GGF+SL TLSLS ++ + +  LLDLF  S+FP L+KL LD+C G+K L VGCR 
Sbjct: 143 PSMVMRGGFQSLQTLSLSHMVFYKKHYLLDLFAGSAFPVLRKLTLDSCRGIKFLDVGCRV 202

Query: 241 LEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS 300
           L+DLT++NC QL GL + G +LERLRV SCF++  +KSWVKI A +L+V++WE+NAIT +
Sbjct: 203 LQDLTVENCFQLHGLTVSGPRLERLRVVSCFESSSEKSWVKIIAPRLRVMHWEHNAITET 262

Query: 301 SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYF 360
           S LENLAS+ EA +GF  L ED  + K +SVSN LSGLSHA  LTL+S CI++  +   F
Sbjct: 263 SCLENLASMEEAFIGFFALDEDTRAEKYKSVSNILSGLSHAHCLTLQSQCIQVFLSFQAF 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	512
TAIR|locus:2125447	498	AT4G03220 "AT4G03220" [Arabido	0.964	0.991	0.501	8.3e-122
TAIR|locus:2037558	452	AT1G78760 "AT1G78760" [Arabido	0.417	0.473	0.262	1.4e-15
TAIR|locus:505006456	468	AT4G14096 "AT4G14096" [Arabido	0.365	0.399	0.293	9.7e-15
TAIR|locus:2015681	449	AT1G16930 "AT1G16930" [Arabido	0.505	0.576	0.235	1.1e-14
TAIR|locus:2162489	450	AT5G22660 "AT5G22660" [Arabido	0.396	0.451	0.275	1.4e-14
TAIR|locus:2092737	456	AT3G18150 "AT3G18150" [Arabido	0.091	0.103	0.553	2.4e-14
TAIR|locus:2201512	453	AT1G66290 "AT1G66290" [Arabido	0.587	0.664	0.264	2.6e-14
TAIR|locus:2016630	505	AT1G58310 [Arabidopsis thalian	0.333	0.338	0.300	3.7e-14
TAIR|locus:2201527	442	AT1G66310 "AT1G66310" [Arabido	0.103	0.119	0.433	6.3e-14
TAIR|locus:2026761	451	AT1G69630 [Arabidopsis thalian	0.093	0.106	0.489	1.1e-13

TAIR|locus:2125447 AT4G03220 "AT4G03220" [Arabidopsis thaliana (taxid:3702)]

 Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
 Identities = 259/516 (50%), Positives = 338/516 (65%)

Query:     1 METRSAKRRKLYFSENDQCDNGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLW 60
             METRS KR+K    E       +DRIS+LPD++ H IL LLP+KS AQ   LSKRWRSL+
Sbjct:     1 METRSVKRKKKKKEEEANWFIRVDRISNLPDSLNHQILLLLPLKSAAQASLLSKRWRSLF 60

Query:    61 CSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFR 120
              S PDLDF +IN L             K P+  S   +  +  + S RD ++ +R LRFR
Sbjct:    61 LSLPDLDFTSINDL-------------KNPKSFSSNSIYKVLSLRSHRDSNN-LRSLRFR 106

Query:   121 AHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLP 180
               ++F+ LN LIR A+ H V++LDIEV T DYFN PR ++TS +LR   L+S   GFRLP
Sbjct:   107 VPVTFTSLNSLIRLAVTHQVQDLDIEVTTKDYFNFPRWIVTSQNLRALTLKSANLGFRLP 166

Query:   181 PSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRA 240
             PSS   GGF+ L +LSLS VIL NQPCL D FTD SFP L+KL L+ C+GLK+LKV CR 
Sbjct:   167 PSSSARGGFQKLTSLSLSRVILHNQPCLSDFFTDPSFPLLEKLTLECCFGLKELKVSCRL 226

Query:   241 LEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS 300
             L++ +L N +QL GL++ G KL++L+V SCF +Y +KS+VKI+   LK   W  NA+T S
Sbjct:   227 LQEFSLKNSLQLEGLEVSGNKLQKLKVESCFYSYSEKSFVKINTPNLKTFLWNSNAVTTS 286

Query:   301 SS-LENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNY 359
                L+ L  L +A V     H+DL S ++QS+   LSGL H+  L L +  +EILS++  
Sbjct:   287 VHFLDKLVCLRKAFVKVFWHHQDLNS-QIQSLFTLLSGLCHSYKLQLGNQSVEILSSKKG 345

Query:   360 FTNLHT--FTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRD 417
                 H   F N++ LEL T  N+HNVQ L+CLF+S P ++ L +KII+D   +RRQWN+D
Sbjct:   346 LLKNHLLPFHNMRFLELQTRLNRHNVQTLSCLFKSCPMLNILTVKIIDDQTSERRQWNKD 405

Query:   418 LWDMYTXXXXXXXXXXXXTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTL 477
             LWDM +             L+ FLN+L  VEIHGF+ECENE+SLA FLL+HGKAL +MTL
Sbjct:   406 LWDM-SNSEIQYWESQAYELESFLNHLEFVEIHGFVECENEMSLAIFLLRHGKALIKMTL 464

Query:   478 CTGH-CNYRDSLRRQKVRSQMMGFSWASSNARIAFH 512
              +   C  RDSLRRQ +RSQ+ GFS ASS A+I+FH
Sbjct:   465 RSSFLC--RDSLRRQMIRSQLTGFSMASSKAKISFH 498

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037558 AT1G78760 "AT1G78760" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
 Identities = 64/244 (26%), Positives = 117/244 (47%)

Query:   178 RLPPSSVVAGGFRSLHTLSLSLVILFNQPCL---------LDLFTDSSFPHLKKLDLDAC 228
             ++PPS        SL +L L  VIL N   +         LD+   S+   L+K+ + +C
Sbjct:   134 QIPPSVYTC---ESLVSLKLCNVILPNPKVISLPLVKVIELDIVKFSNALVLEKI-ISSC 189

Query:   229 YGLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLK 288
               L+ L +   +++D+   N +++    +   K     + +C D + D+  V IDA KL+
Sbjct:   190 SALESLIISRSSVDDI---NVLRVSSRSLLSFK----HIGNCSDGW-DELEVAIDAPKLE 241

Query:   289 VLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSA----KLQSVSNFLSGLSHARSL 344
              LN   ++ TA   ++N  SL EA +  I   E+L       K + + +FL+ +S  + L
Sbjct:   242 YLNISDHS-TAKFKMKNSGSLVEAKINIIFNMEELPHPNDRPKRKMIQDFLAEISSVKKL 300

Query:   345 TLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII 404
              + S  +E++ +      L  F NL SL  H  F  H ++ L+   +S P++ +L+++  
Sbjct:   301 FISSHTLEVIHDLG--CELPLFRNLSSL--HIDFEDHTLKMLSTFLQSCPNVKSLVVEFK 356

Query:   405 NDYK 408
             +  K
Sbjct:   357 DSSK 360

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006456 AT4G14096 "AT4G14096" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 9.7e-15, Sum P(2) = 9.7e-15
 Identities = 61/208 (29%), Positives = 98/208 (47%)

Query:   208 LLDLFTDSSFPHLKKLDLDACY------GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTK 261
             LL+ F D   P LK L +D+CY      GL +L  GC  LEDL LD+ I  C  D     
Sbjct:   149 LLE-FEDVYLPKLKTLYIDSCYFEKYGIGLTKLLSGCPILEDLVLDD-IPWCTWDFASVS 206

Query:   262 ---LERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFIL 318
                L+RL  ++       KS V ID   L  L +  + +       N  SL EA +   L
Sbjct:   207 VPTLKRLTFSTQVRDEFPKS-VSIDTPNLVYLKFT-DTVAGKYPKVNFDSLVEAHIDLRL 264

Query:   319 L--HEDL-TSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTN-LHTFTNLKSLEL 374
             L  H+    +  + + ++F+  + + ++L L S  +++L+   Y  + +  F NL  L +
Sbjct:   265 LQGHQGYGENDMVGNATDFIMRICNVKTLYLSSNTLQVLT---YSCDAIPIFNNLTHLTI 321

Query:   375 HTGFNKHNVQGLACLFRSSPSIHTLILK 402
              +   +   Q L  L ++SP++ TLI +
Sbjct:   322 ESN-PEVGWQSLPGLLKNSPNLETLIFQ 348

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015681 AT1G16930 "AT1G16930" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 66/280 (23%), Positives = 122/280 (43%)

Query:   219 HLKKLDLDACYGLKQLKVGCRALEDLTL--DNCIQLCGLDIFGTKLERLRVASCFDAYCD 276
             HL  +  DA   L+ L  GC  LE+LT+  D    L  + +    L+  ++ S  + Y  
Sbjct:   168 HLDMVKYDADSTLEILISGCPVLEELTIVRDPNDSLEVVCVRSQSLKSFKIDS--ERYES 225

Query:   277 KSWV-KIDASKLKVLNWEYNAITASSSLENLASLHEASVGFIL---LHEDLT---SAKLQ 329
             ++ V  IDA +L+ +N   +  + S  + N+    +  +  I     ++ L    S+K+ 
Sbjct:   226 QNHVVTIDAPRLEYMNL-CDHRSDSFIIHNIGPFAKVDIDVIFNVEYNDPLEPDDSSKIA 284

Query:   330 SVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACL 389
              +  FL+GLS    + + S  ++++ +      L  F+NL    LH  F     + L   
Sbjct:   285 MLGKFLTGLSTVSEMVISSDTLQVIHDYCKMEQLPQFSNLS--RLHAYFEDTWWEMLPTF 342

Query:   390 FRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTXXXXXXXXXXXXTLKPFLNNLNVVEI 449
               S P++H+L+++   D      Q   DL   Y                P++ N+   E 
Sbjct:   343 LESFPNLHSLVMEF--DCFPDTEQI--DL--SYVPQCFLSSLEFVHLKTPYVVNMQK-EG 395

Query:   450 HGFLECENEVSLAKFLLKHGKALQEMTLCTGHCNYRDSLR 489
                    ++  LAK+ L++G AL+++T+    CN  D ++
Sbjct:   396 RPLTGTSSKRKLAKYFLENGAALKKLTVSASFCNIIDEIK 435

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162489 AT5G22660 "AT5G22660" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
 Identities = 63/229 (27%), Positives = 106/229 (46%)

Query:   195 LSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDA---CYG--LKQLKVGCRALEDLTL--- 246
             LS SLV L     +L  F   S P+LK + L+     Y   +++    C  LEDLT+   
Sbjct:   135 LSESLVSLRLHLVMLHRFVFVSLPNLKVMHLEENIYSYAETMEKFISSCPVLEDLTVVRN 194

Query:   247 -DNCIQLCGLDIFGTKLERLRV----ASCFDAYCDKS--W-VKIDASKLKVLNWEYNAIT 298
              D   +   L +    L  L++    + C+  Y D S  W V IDA +L  L+ + +  +
Sbjct:   195 VDEATEKV-LRVSSQSLNSLKLVIDSSKCW--YNDDSDDWKVVIDAPQLVYLSLKDDQ-S 250

Query:   299 ASSSLENLASLHEASVGFILLHEDL----TSAKLQSVSNFLSGLSHARSLTLESPCIEIL 354
              S  + NL S  +A +       D+     S +  +V  FL+GLS  R +T+    ++I+
Sbjct:   251 VSFVINNLCSSAKADIKVSFNVSDIWDLEESFERSNVGKFLTGLSSLRDMTISGTTLKII 310

Query:   355 SNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI 403
              +      +  F N+    LH  F   +++ L C+  S P++ +L+LK+
Sbjct:   311 CHYLKHEPMPQFRNMT--RLHAKFYVCDLEMLPCVLESCPNLKSLVLKL 357

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092737 AT3G18150 "AT3G18150" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
 Identities = 26/47 (55%), Positives = 29/47 (61%)

Query:    23 IDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFN 69
             +D IS LPD IL HIL  +P K    T  LSKRWR +WC  P L FN
Sbjct:    30 VDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSFN 76

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2201512 AT1G66290 "AT1G66290" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.6e-14, Sum P(3) = 2.6e-14
 Identities = 93/351 (26%), Positives = 156/351 (44%)

Query:    93 ISLKEMDLI-SQVLSIRDKHSYIRVLRF---RAHLS-FSCLNGLIRRAIRHN--VEELDI 145
             ++L   D+I + VLS + ++ +  V R      H + F  L   I R +R N  V +  +
Sbjct:    44 LNLPTKDVIKTSVLSTKWRNIWRYVPRLDLDNRHFTEFDSLASFIDRFMRSNRKVNKFKL 103

Query:   146 EVATD-DY-FNLPRC----VITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSL 199
                +D D   +L  C    +  +   +V  +   + G R+ P         SL +L LS 
Sbjct:   104 RCGSDLDGDVDLATCSWKWIYMAIKRKVQHIDVTWPGVRIYPEIY---NCESLVSLKLSE 160

Query:   200 VILFNQPCLLDLFTDSSFPHLKKLDLDAC-----YGLKQLKVGCRALEDLTL-----DNC 249
             V L  +P  + L      P LK L LD       +    L  GC  LE  TL     DN 
Sbjct:   161 VTL-TKPEFVSL------PSLKVLVLDWVEFYNEFAFDMLMSGCPVLESFTLCRRYLDN- 212

Query:   250 IQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASL 309
             +++  + I  + L      S   ++ D   V +DA KL+ L   +  +TAS  +ENL+SL
Sbjct:   213 VRVLRV-ISQSLLSFNYYGSSSKSFRDDLVVILDAPKLEKLKLSHQ-LTASFIIENLSSL 270

Query:   310 HEASVG--FILLH------EDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFT 361
              EA +   F          +DL   K + + NFL GLS  +++T+ +  +E++ + +   
Sbjct:   271 VEADIDIEFNFCRGKKFDPDDLP--KREMIRNFLVGLSRVKTMTIAACTLEVIYDYSRCE 328

Query:   362 NLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRR 412
              L  F NL    +   F +   + L   F+S  ++ +L+L+  +DY  ++R
Sbjct:   329 PLPLFPNLSFFSVE--FYQKRWEILPFFFKSCSNLKSLVLE--SDYFPRKR 375

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016630 AT1G58310 [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
 Identities = 55/183 (30%), Positives = 91/183 (49%)

Query:    24 DRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGKYNT 83
             D IS LPD++L HIL  L  K  A T  L+K+WR L+ S P+LDF+  + + +  GK N 
Sbjct:     8 DIISGLPDSLLCHILSFLNTKEAASTSVLAKKWRYLFASVPNLDFD--DSVHLRLGKRNP 65

Query:    84 S-SGA-------KRPRFISLKEMDLISQVLSIRDKHSYIRV-LRFRAHLSFSCLNGLIRR 134
             + SG        +R   +S   MD + QVL ++D     +  L+ R  +    +   I +
Sbjct:    66 AVSGEDYLKMINERSDQLSTSFMDFVDQVLRLQDNSPLHKFSLKIRDCVDIVRIICWILK 125

Query:   135 AIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHT 194
              +   V +L++++      +LP  +  S++L   KL S  RG  +    V     ++LH 
Sbjct:   126 VLERGVSDLELDMHLKWKSSLPSKIFLSETLVRLKL-SVERGPFIDVEDVHLPKLKTLHI 184

Query:   195 LSL 197
             +S+
Sbjct:   185 VSV 187

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2201527 AT1G66310 "AT1G66310" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 6.3e-14, Sum P(3) = 6.3e-14
 Identities = 23/53 (43%), Positives = 35/53 (66%)

Query:    18 QCDNGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNT 70
             Q D+ +D + DLP+++L HIL  LP K + +T  LS +WR+LW   P LD ++
Sbjct:    13 QSDDEVDWLRDLPESLLCHILLNLPTKDVVKTSVLSSKWRNLWRLVPGLDLDS 65

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026761 AT1G69630 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
 Identities = 24/49 (48%), Positives = 31/49 (63%)

Query:    23 IDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDF-NT 70
             +D IS LPD +L  +L  LP K + +T  LS+RWR+LW   P LD  NT
Sbjct:    17 VDWISKLPDCLLCEVLLNLPTKDVVKTSVLSRRWRNLWKHVPGLDLDNT 65

GO:0005634 "nucleus" evidence=ISM

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZR09	FDL25_ARATH	No assigned EC number	0.5145	0.9667	0.9939	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	512
smart00579	72	smart00579, FBD, domain in FBox and BRCT domain co	6e-09
pfam00646	48	pfam00646, F-box, F-box domain	5e-05
pfam08387	51	pfam08387, FBD, FBD	5e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	0.004

>gnl|CDD|214730 smart00579, FBD, domain in FBox and BRCT domain containing plant proteins

 Score = 52.1 bits (126), Expect = 6e-09
 Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 440 FLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCTGHCNYRDSLRRQKVRSQMMG 499
            L++L V+EI G+   E E  L K+ L++   L+++T+        D   + ++  +++ 
Sbjct: 3   LLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISV---ETSDDEEKLEILKELLS 59

Query: 500 FSWASSNARIAFH 512
              ASS+ ++ F 
Sbjct: 60  LPRASSSCQVQFL 72

Length = 72

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 24 DRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFP 64
            + DLPD +L  IL  L  K + +   +SKRWRSL  S  
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLK 41

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|203925 pfam08387, FBD, FBD

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 429 YWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCT 479
           +W   S   +  L++L  VE  G+   E E+ LAK++L++ + L++MT+  
Sbjct: 1   FWNQPSSVPECLLSSLETVEWRGYRGEEEELELAKYILENARVLKKMTISL 51

This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors. Length = 51

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 29 LPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFP 64
          LPD IL  IL  L  K + +   +S++WRSL  S  
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHD 36

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	512
KOG4341	483	consensus F-box protein containing LRR [General fu	99.63
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.52
smart00579	72	FBD domain in FBox and BRCT domain containing plan	99.34
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	99.18
KOG4341	483	consensus F-box protein containing LRR [General fu	99.08
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.78
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.74
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.55
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.52
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.46
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.39
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.38
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.32
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.28
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.24
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.14
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.03
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.67
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.62
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.62
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.53
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.51
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.43
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.32
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.3
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.19
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.74
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.71
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.67
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.65
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.65
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.63
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.57
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.46
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.34
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.98
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	95.79
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	95.29
PRK15386	426	type III secretion protein GogB; Provisional	95.11
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	94.92
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	94.11
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.09
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	93.93
KOG2982	418	consensus Uncharacterized conserved protein [Funct	93.83
KOG2997	366	consensus F-box protein FBX9 [General function pre	93.76
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.72
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	93.5
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	93.48
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	93.22
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	93.11
KOG0617	264	consensus Ras suppressor protein (contains leucine	92.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	92.71
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	92.58
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	92.06
KOG4237	498	consensus Extracellular matrix protein slit, conta	91.92
PRK15386	426	type III secretion protein GogB; Provisional	91.64
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.53
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	91.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	90.67
PF13013	109	F-box-like_2: F-box-like domain	90.42
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	90.37
KOG0617	264	consensus Ras suppressor protein (contains leucine	89.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	89.49
PLN03150	623	hypothetical protein; Provisional	87.8
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	86.34
PLN03150	623	hypothetical protein; Provisional	86.07
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	85.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	84.62
KOG2123	388	consensus Uncharacterized conserved protein [Funct	84.32
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.3
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	81.63
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	80.77
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	80.25

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.63  E-value=1.6e-17  Score=157.24  Aligned_cols=332  Identities=19%  Similarity=0.219  Sum_probs=216.0

Q ss_pred             CCCChHHHHHHHccCCchhhHHHhhhcHhHHHh------hccCCcccccCCCccccccCcccCcCCCCCcccchhhHhHH
Q 043655           27 SDLPDAILHHILFLLPIKSIAQTCTLSKRWRSL------WCSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDL  100 (512)
Q Consensus        27 s~LPdevl~~Ils~L~~~d~~rts~lSrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (512)
                      -.||.|++.+|||+|+++...|++.+|+-|..+      |.++.-.+|....+.                        ..
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g------------------------~V  128 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG------------------------GV  128 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC------------------------cc
Confidence            459999999999999999999999999999864      776655555432111                        23


Q ss_pred             HHHHHhhhcccCceeeeEEeeccCcchhhHHHHHHH-hcCCceeEEEeccCCCCCCCccee-----ccCCccEEEEeccc
Q 043655          101 ISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAI-RHNVEELDIEVATDDYFNLPRCVI-----TSDSLRVFKLRSRY  174 (512)
Q Consensus       101 v~~~l~~~~~~~~i~~l~l~~~~~~~~~~~wi~~~~-~~~v~~L~l~~~~~~~~~lp~~l~-----~~~~L~~L~L~~~~  174 (512)
                      |..++...  +..++.++++...... ....-.++. .+++++|.+..+.    .+....+     .|+.|++|.|-.|.
T Consensus       129 V~~~~~Rc--gg~lk~LSlrG~r~v~-~sslrt~~~~CpnIehL~l~gc~----~iTd~s~~sla~~C~~l~~l~L~~c~  201 (483)
T KOG4341|consen  129 VENMISRC--GGFLKELSLRGCRAVG-DSSLRTFASNCPNIEHLALYGCK----KITDSSLLSLARYCRKLRHLNLHSCS  201 (483)
T ss_pred             eehHhhhh--ccccccccccccccCC-cchhhHHhhhCCchhhhhhhcce----eccHHHHHHHHHhcchhhhhhhcccc
Confidence            34443322  2457777777633221 111111222 2678888665443    2222111     37888888887742


Q ss_pred             CccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccc-----cchhcccccccceeeeccc
Q 043655          175 RGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYG-----LKQLKVGCRALEDLTLDNC  249 (512)
Q Consensus       175 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~-----l~~l~~~cp~Le~L~l~~c  249 (512)
                      . ++-......+.+|++|+.|.+++|.-....+++.+.  .+|..|+++.+.+|.+     +..+...|+.+-.+++..|
T Consensus       202 ~-iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~--rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c  278 (483)
T KOG4341|consen  202 S-ITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ--RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHC  278 (483)
T ss_pred             h-hHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh--ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhh
Confidence            1 111111224567889999999888877766777766  4888888888888873     3445567788888888888


Q ss_pred             cCccceeEe-----ccCcceEEEeeeccccCC-CceEEEeCCCcceEEeeccccCCC----ccccCcccceeeEEeeEEc
Q 043655          250 IQLCGLDIF-----GTKLERLRVASCFDAYCD-KSWVKIDASKLKVLNWEYNAITAS----SSLENLASLHEASVGFILL  319 (512)
Q Consensus       250 ~~l~~~~v~-----~~~L~~L~l~~c~~~~~~-~~~~~i~~p~L~~L~~~~~~~~~~----~~l~~~~~L~~l~l~~~~~  319 (512)
                      ..+++..+-     ...|+.|...+|.+..+. ...+..++++|+.+.+.++..-..    ..--+.+.|+++++.-+..
T Consensus       279 ~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~  358 (483)
T KOG4341|consen  279 NQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL  358 (483)
T ss_pred             ccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence            766655422     367888888888765443 334556789999999998753111    2234788999988887665


Q ss_pred             ccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccc---cccccccccccceEEEEeeccCCcHHHHHHHHhhCCCC
Q 043655          320 HEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRN---YFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSI  396 (512)
Q Consensus       320 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~L  396 (512)
                      ..+.      .+..+-.+|+.++.|.++...+  +.+..   ..........|..|.|..+...  .+....++..||+|
T Consensus       359 ~~d~------tL~sls~~C~~lr~lslshce~--itD~gi~~l~~~~c~~~~l~~lEL~n~p~i--~d~~Le~l~~c~~L  428 (483)
T KOG4341|consen  359 ITDG------TLASLSRNCPRLRVLSLSHCEL--ITDEGIRHLSSSSCSLEGLEVLELDNCPLI--TDATLEHLSICRNL  428 (483)
T ss_pred             ehhh------hHhhhccCCchhccCChhhhhh--hhhhhhhhhhhccccccccceeeecCCCCc--hHHHHHHHhhCccc
Confidence            4442      4677788899999999985432  22221   1112335667888888876433  35778999999999


Q ss_pred             cEEEEE
Q 043655          397 HTLILK  402 (512)
Q Consensus       397 e~L~l~  402 (512)
                      |.+++-
T Consensus       429 eri~l~  434 (483)
T KOG4341|consen  429 ERIELI  434 (483)
T ss_pred             ceeeee
Confidence            996653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=1.5e-15  Score=137.90  Aligned_cols=256  Identities=18%  Similarity=0.198  Sum_probs=154.8

Q ss_pred             cCCCChHHHHHHHccCCchhhHHHhhhcHhHHHh------hccCCcccccCCCccccccCcccCcCCCCCcccchhhHhH
Q 043655           26 ISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSL------WCSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMD   99 (512)
Q Consensus        26 is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (512)
                      +..|||||+..||+.|+.||+.+.+.|||||.++      |..++   +......                       .+
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lD---l~~r~i~-----------------------p~  151 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLD---LTGRNIH-----------------------PD  151 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeec---cCCCccC-----------------------hh
Confidence            6789999999999999999999999999999864      65532   2111100                       02


Q ss_pred             HHHHHHhhhcccCceeeeEEeeccCcchhhHHHHHHHhcCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCcccc
Q 043655          100 LISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRL  179 (512)
Q Consensus       100 ~v~~~l~~~~~~~~i~~l~l~~~~~~~~~~~wi~~~~~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~  179 (512)
                      ...+.+.     .+|..+++--....  -.+...++                   .    ..-+.|++|+|++  ..++.
T Consensus       152 ~l~~l~~-----rgV~v~Rlar~~~~--~prlae~~-------------------~----~frsRlq~lDLS~--s~it~  199 (419)
T KOG2120|consen  152 VLGRLLS-----RGVIVFRLARSFMD--QPRLAEHF-------------------S----PFRSRLQHLDLSN--SVITV  199 (419)
T ss_pred             HHHHHHh-----CCeEEEEcchhhhc--Cchhhhhh-------------------h----hhhhhhHHhhcch--hheeH
Confidence            2232222     12333333210000  00000000                   0    0124466666666  12222


Q ss_pred             CCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccc-----cchhcccccccceeeeccccCccc
Q 043655          180 PPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYG-----LKQLKVGCRALEDLTLDNCIQLCG  254 (512)
Q Consensus       180 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~-----l~~l~~~cp~Le~L~l~~c~~l~~  254 (512)
                      ...-.+...|..|+.|+|++.++.++  +..-+  +.-.+|+.|+|..|+|     ++-++..|..|.+|+|..|.....
T Consensus       200 stl~~iLs~C~kLk~lSlEg~~LdD~--I~~~i--AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~  275 (419)
T KOG2120|consen  200 STLHGILSQCSKLKNLSLEGLRLDDP--IVNTI--AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE  275 (419)
T ss_pred             HHHHHHHHHHHhhhhccccccccCcH--HHHHH--hccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch
Confidence            11112345688888888888888664  22212  3467888899988875     445678899999999999976543


Q ss_pred             ee---E--eccCcceEEEeeeccccC--CCceEEEeCCCcceEEeeccccCCC---ccccCcccceeeEEeeEEcccchh
Q 043655          255 LD---I--FGTKLERLRVASCFDAYC--DKSWVKIDASKLKVLNWEYNAITAS---SSLENLASLHEASVGFILLHEDLT  324 (512)
Q Consensus       255 ~~---v--~~~~L~~L~l~~c~~~~~--~~~~~~i~~p~L~~L~~~~~~~~~~---~~l~~~~~L~~l~l~~~~~~~~~~  324 (512)
                      ..   |  .+++|+.|++.+|.....  +...+...+|+|..|+++++..-..   ..+..++.|++++++-|...... 
T Consensus       276 ~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~-  354 (419)
T KOG2120|consen  276 KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPE-  354 (419)
T ss_pred             hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChH-
Confidence            31   1  138899999988854321  1233445789999999887643211   34557888898888877644332 


Q ss_pred             HHHHhHHHHHhhcCCcccEeeecchh
Q 043655          325 SAKLQSVSNFLSGLSHARSLTLESPC  350 (512)
Q Consensus       325 ~~~~~~~~~~l~~l~~l~~L~l~~~~  350 (512)
                            ..--+.+.|.+..|++.+..
T Consensus       355 ------~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  355 ------TLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ------HeeeeccCcceEEEEecccc
Confidence                  22336677888888887654

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=99.34  E-value=2.5e-12  Score=95.91  Aligned_cols=72  Identities=24%  Similarity=0.482  Sum_probs=61.9

Q ss_pred             hhhhcCccEEEEeeeccchhHHHHHHHHHhcCccccceEEEecccCccchHHHHHHHHHhccCCccCCCceeeeC
Q 043655          438 KPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCTGHCNYRDSLRRQKVRSQMMGFSWASSNARIAFH  512 (512)
Q Consensus       438 ~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~L~~m~i~~~~~~~~~~~~~~~~~~~l~~~~~as~~~~v~~~  512 (512)
                      +|+.+||++|+|.+|.|...|+++++|+++||+.||+|+|..++...  + ....+.++|..++|||++|+|.|+
T Consensus         1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~--~-~~~~i~~~L~~~~~aS~~c~i~~~   72 (72)
T smart00579        1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDD--D-EKLEILKELLSLPRASSSCQVQFL   72 (72)
T ss_pred             CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCc--c-HHHHHHHHHHhCcCCCCceEEEeC
Confidence            36788999999999999999999999999999999999999875332  2 225556789999999999999985

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=99.18  E-value=2.4e-11  Score=83.07  Aligned_cols=50  Identities=36%  Similarity=0.661  Sum_probs=46.1

Q ss_pred             hhhccccCchhhhcCccEEEEeeeccchhHHHHHHHHHhcCccccceEEE
Q 043655          429 YWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLC  478 (512)
Q Consensus       429 ~w~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~L~~m~i~  478 (512)
                      +|.+...+++|+.+||+.|++.+|.|.++|++|++|+++||++||+|+|.
T Consensus         1 ~W~~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~   50 (51)
T PF08387_consen    1 FWIEPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS   50 (51)
T ss_pred             CCCCCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence            36556667999999999999999999999999999999999999999996

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.08  E-value=7.8e-12  Score=119.07  Aligned_cols=285  Identities=20%  Similarity=0.199  Sum_probs=174.1

Q ss_pred             CCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccc-----cchhccc
Q 043655          163 DSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYG-----LKQLKVG  237 (512)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~-----l~~l~~~  237 (512)
                      ..|+.|.|++|. .....+.......+|++++|.+.+|...++..+..+.  ..|++|+.|+|.+|..     ++.+..+
T Consensus       138 g~lk~LSlrG~r-~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla--~~C~~l~~l~L~~c~~iT~~~Lk~la~g  214 (483)
T KOG4341|consen  138 GFLKELSLRGCR-AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA--RYCRKLRHLNLHSCSSITDVSLKYLAEG  214 (483)
T ss_pred             cccccccccccc-cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH--HhcchhhhhhhcccchhHHHHHHHHHHh
Confidence            457777777742 1222233334567888888888888877766665554  4788888888888763     4456667


Q ss_pred             ccccceeeeccccCccceeEec-----cCcceEEEeeeccccCC-CceEEEeCCCcceEEeeccccCCCc----cccCcc
Q 043655          238 CRALEDLTLDNCIQLCGLDIFG-----TKLERLRVASCFDAYCD-KSWVKIDASKLKVLNWEYNAITASS----SLENLA  307 (512)
Q Consensus       238 cp~Le~L~l~~c~~l~~~~v~~-----~~L~~L~l~~c~~~~~~-~~~~~i~~p~L~~L~~~~~~~~~~~----~l~~~~  307 (512)
                      ||+|++|++..|+.+..-.|.+     ..++.+..++|...... ...+.-.++.+..+++..+..-...    .--++.
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            8888888888887665533322     44667767777543222 1122223344444443333211111    112456


Q ss_pred             cceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHH
Q 043655          308 SLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLA  387 (512)
Q Consensus       308 ~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~  387 (512)
                      .|+.++.+.+...++      ..+..+.+++++|+.|.+.....  ..+.........++.|+.|.+..+....+ ..+.
T Consensus       295 ~lq~l~~s~~t~~~d------~~l~aLg~~~~~L~~l~l~~c~~--fsd~~ft~l~rn~~~Le~l~~e~~~~~~d-~tL~  365 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITD------EVLWALGQHCHNLQVLELSGCQQ--FSDRGFTMLGRNCPHLERLDLEECGLITD-GTLA  365 (483)
T ss_pred             HhhhhcccCCCCCch------HHHHHHhcCCCceEEEeccccch--hhhhhhhhhhcCChhhhhhcccccceehh-hhHh
Confidence            667776666655444      34778888999999999986642  33332222444678999999987644332 3588


Q ss_pred             HHHhhCCCCcEEEEEeecccchhhhcccccccCccCccchhhhhccccCchhhhcCccEEEEeeeccchhHHHHHHHHHh
Q 043655          388 CLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLK  467 (512)
Q Consensus       388 ~~L~~cp~Le~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~  467 (512)
                      ++-.+||.|++|++.-..               ..++.+-.    ......|-..+|.++++.+......+   .-..+.
T Consensus       366 sls~~C~~lr~lslshce---------------~itD~gi~----~l~~~~c~~~~l~~lEL~n~p~i~d~---~Le~l~  423 (483)
T KOG4341|consen  366 SLSRNCPRLRVLSLSHCE---------------LITDEGIR----HLSSSSCSLEGLEVLELDNCPLITDA---TLEHLS  423 (483)
T ss_pred             hhccCCchhccCChhhhh---------------hhhhhhhh----hhhhccccccccceeeecCCCCchHH---HHHHHh
Confidence            999999999999997211               11111101    11223355788999999988776533   223456


Q ss_pred             cCccccceEEEecc
Q 043655          468 HGKALQEMTLCTGH  481 (512)
Q Consensus       468 ~a~~L~~m~i~~~~  481 (512)
                      +++.||++.++.-.
T Consensus       424 ~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  424 ICRNLERIELIDCQ  437 (483)
T ss_pred             hCcccceeeeechh
Confidence            78899998877653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.78  E-value=1.2e-08  Score=115.69  Aligned_cols=169  Identities=23%  Similarity=0.175  Sum_probs=88.6

Q ss_pred             cCCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      ..++.|++....- ...+|..++ .+++|++|+|++|.....+|.     ..+++|++|+|+++.+.+.  +...+  ..
T Consensus        93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-----~~l~~L~~L~Ls~n~~~~~--~p~~~--~~  162 (968)
T PLN00113         93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-----GSIPNLETLDLSNNMLSGE--IPNDI--GS  162 (968)
T ss_pred             CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCc-----cccCCCCEEECcCCccccc--CChHH--hc
Confidence            5666666653221 125666666 678888888877432222222     2467788888877776532  11111  25


Q ss_pred             Ccccceecccccc---ccchhcccccccceeeeccccCcccee--E-eccCcceEEEeeeccccCCCceEEEeCCCcceE
Q 043655          217 FPHLKKLDLDACY---GLKQLKVGCRALEDLTLDNCIQLCGLD--I-FGTKLERLRVASCFDAYCDKSWVKIDASKLKVL  290 (512)
Q Consensus       217 ~p~L~~L~L~~~~---~l~~l~~~cp~Le~L~l~~c~~l~~~~--v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L  290 (512)
                      +++|+.|+|.++.   .+...+..+++|+.|++.+|.....+.  + ..++|+.|.+.++......... ....++|++|
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L  241 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHL  241 (968)
T ss_pred             CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEE
Confidence            6777777777764   222334566777777777765322211  1 1256666666655322111111 1234566666


Q ss_pred             EeeccccCCC--ccccCcccceeeEEeeE
Q 043655          291 NWEYNAITAS--SSLENLASLHEASVGFI  317 (512)
Q Consensus       291 ~~~~~~~~~~--~~l~~~~~L~~l~l~~~  317 (512)
                      ++.++.+...  ..++++++|+.++++.+
T Consensus       242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  270 (968)
T PLN00113        242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQN  270 (968)
T ss_pred             ECcCceeccccChhHhCCCCCCEEECcCC
Confidence            6665543211  23455566666655544

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.74  E-value=7.8e-09  Score=69.78  Aligned_cols=35  Identities=34%  Similarity=0.614  Sum_probs=30.9

Q ss_pred             cCCCChHHHHHHHccCCchhhHHHhhhcHhHHHhh
Q 043655           26 ISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLW   60 (512)
Q Consensus        26 is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~lw   60 (512)
                      |+.||+||+.+||++|+.+|.++++.|||+|+.+-
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999853

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.73  E-value=1.7e-08  Score=114.38  Aligned_cols=194  Identities=19%  Similarity=0.120  Sum_probs=125.2

Q ss_pred             CCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCc
Q 043655          139 NVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFP  218 (512)
Q Consensus       139 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p  218 (512)
                      .|..|++....- ...+|..+..++.|+.|+|++|.....+|..  ....+++|++|+|+++.+.+....      ..++
T Consensus        70 ~v~~L~L~~~~i-~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~--~~~~l~~L~~L~Ls~n~l~~~~p~------~~l~  140 (968)
T PLN00113         70 RVVSIDLSGKNI-SGKISSAIFRLPYIQTINLSNNQLSGPIPDD--IFTTSSSLRYLNLSNNNFTGSIPR------GSIP  140 (968)
T ss_pred             cEEEEEecCCCc-cccCChHHhCCCCCCEEECCCCccCCcCChH--HhccCCCCCEEECcCCccccccCc------cccC
Confidence            455555543221 1234555667899999999985332244432  233689999999999988653211      3589


Q ss_pred             ccceecccccc---ccchhcccccccceeeeccccCcccee--E-eccCcceEEEeeeccccCCCceEEEeCCCcceEEe
Q 043655          219 HLKKLDLDACY---GLKQLKVGCRALEDLTLDNCIQLCGLD--I-FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNW  292 (512)
Q Consensus       219 ~L~~L~L~~~~---~l~~l~~~cp~Le~L~l~~c~~l~~~~--v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~  292 (512)
                      +|++|+|.++.   .+..-+..+++|+.|++.+|.....+.  + ..++|+.|.+.+|......... .-..++|+.|.+
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L  219 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYL  219 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEEC
Confidence            99999999886   234445678999999999986432221  1 2378999999887543211111 125689999999


Q ss_pred             eccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchh
Q 043655          293 EYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPC  350 (512)
Q Consensus       293 ~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~  350 (512)
                      .++.+...  ..++++++|+.+++..+...+.        +...+..+++|+.|++..+.
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--------~p~~l~~l~~L~~L~L~~n~  271 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP--------IPSSLGNLKNLQYLFLYQNK  271 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccc--------cChhHhCCCCCCEEECcCCe
Confidence            88765432  3467899999999987654221        12335566667777666543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=2.5e-09  Score=97.92  Aligned_cols=193  Identities=15%  Similarity=0.127  Sum_probs=134.0

Q ss_pred             ccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc---ccchhcccccccceeeeccccCccceeEe-----ccCc
Q 043655          191 SLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY---GLKQLKVGCRALEDLTLDNCIQLCGLDIF-----GTKL  262 (512)
Q Consensus       191 ~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~---~l~~l~~~cp~Le~L~l~~c~~l~~~~v~-----~~~L  262 (512)
                      +|+.|+|+...++-. .+..++  +.|.+|+.|.|.+..   .+..-+..-..|+.|+|..|.|++...+.     +.+|
T Consensus       186 Rlq~lDLS~s~it~s-tl~~iL--s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVS-TLHGIL--SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHH-HHHHHH--HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            699999998777543 456666  389999999999986   23333445688999999999998765443     3799


Q ss_pred             ceEEEeeeccccCCCceEEE-eCCCcceEEeeccccCCC-----ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhh
Q 043655          263 ERLRVASCFDAYCDKSWVKI-DASKLKVLNWEYNAITAS-----SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLS  336 (512)
Q Consensus       263 ~~L~l~~c~~~~~~~~~~~i-~~p~L~~L~~~~~~~~~~-----~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~  336 (512)
                      ..|++..|....+..+.+.- -.++|..|+++|+.-.-.     .....+|+|.+++++.+....+       .+...+-
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-------~~~~~~~  335 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-------DCFQEFF  335 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-------hHHHHHH
Confidence            99999999765443222222 478999999999753211     2234789999999987654333       2455677


Q ss_pred             cCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEE
Q 043655          337 GLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTL  399 (512)
Q Consensus       337 ~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L  399 (512)
                      .++.|++|.++-+.. .  .+.....+...|.|.+|++..+..+   ..+.-+.+.||+|+-=
T Consensus       336 kf~~L~~lSlsRCY~-i--~p~~~~~l~s~psl~yLdv~g~vsd---t~mel~~e~~~~lkin  392 (419)
T KOG2120|consen  336 KFNYLQHLSLSRCYD-I--IPETLLELNSKPSLVYLDVFGCVSD---TTMELLKEMLSHLKIN  392 (419)
T ss_pred             hcchheeeehhhhcC-C--ChHHeeeeccCcceEEEEeccccCc---hHHHHHHHhCcccccc
Confidence            788999999975541 1  1111124557789999999876332   3567788899998643

>PLN03210 Resistant to P

Probab=98.52  E-value=1.8e-07  Score=106.94  Aligned_cols=109  Identities=23%  Similarity=0.268  Sum_probs=64.3

Q ss_pred             CCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccc
Q 043655          153 FNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLK  232 (512)
Q Consensus       153 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~  232 (512)
                      ..+|..+ ..++|+.|+|.++.. -.++. .  ...+++|+.|+|+++....  .+.++   ..+++|++|+|.+|..+.
T Consensus       602 ~~lP~~f-~~~~L~~L~L~~s~l-~~L~~-~--~~~l~~Lk~L~Ls~~~~l~--~ip~l---s~l~~Le~L~L~~c~~L~  671 (1153)
T PLN03210        602 RCMPSNF-RPENLVKLQMQGSKL-EKLWD-G--VHSLTGLRNIDLRGSKNLK--EIPDL---SMATNLETLKLSDCSSLV  671 (1153)
T ss_pred             CCCCCcC-CccCCcEEECcCccc-ccccc-c--cccCCCCCEEECCCCCCcC--cCCcc---ccCCcccEEEecCCCCcc
Confidence            4455543 567888888887421 12222 1  2357888888887654221  11111   357888888888776443


Q ss_pred             hh---cccccccceeeeccccCccceeE--eccCcceEEEeeec
Q 043655          233 QL---KVGCRALEDLTLDNCIQLCGLDI--FGTKLERLRVASCF  271 (512)
Q Consensus       233 ~l---~~~cp~Le~L~l~~c~~l~~~~v--~~~~L~~L~l~~c~  271 (512)
                      .+   +..+++|+.|++.+|..+..+..  ..++|+.|.+.+|.
T Consensus       672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        672 ELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS  715 (1153)
T ss_pred             ccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence            33   34567777777777766555432  23567777777764

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.46  E-value=6.2e-08  Score=95.19  Aligned_cols=19  Identities=32%  Similarity=0.417  Sum_probs=9.0

Q ss_pred             HHHHHHHHhcCccccceEE
Q 043655          459 VSLAKFLLKHGKALQEMTL  477 (512)
Q Consensus       459 ~~l~~~ll~~a~~L~~m~i  477 (512)
                      ..+++-+..+++.|+.+.|
T Consensus       296 ~~~~~~~~~~~~~~~~~~~  314 (319)
T cd00116         296 QLLAESLLEPGNELESLWV  314 (319)
T ss_pred             HHHHHHHhhcCCchhhccc
Confidence            4444444444445544444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.39  E-value=4e-08  Score=92.13  Aligned_cols=176  Identities=23%  Similarity=0.290  Sum_probs=112.7

Q ss_pred             CCCcccceecccccc-------ccchhcccccccceeeeccccCccce--eEeccCcceEEEeeeccccCCCceEEEeCC
Q 043655          215 SSFPHLKKLDLDACY-------GLKQLKVGCRALEDLTLDNCIQLCGL--DIFGTKLERLRVASCFDAYCDKSWVKIDAS  285 (512)
Q Consensus       215 ~~~p~L~~L~L~~~~-------~l~~l~~~cp~Le~L~l~~c~~l~~~--~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p  285 (512)
                      ..||+|++|+|+.+-       ++..++++|..|++|.|.+|-. ...  ...+..|..|..          ....-+.|
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~----------~kk~~~~~  157 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAV----------NKKAASKP  157 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHH----------HhccCCCc
Confidence            368888888888763       5777888999999999999942 100  000011111110          11222567


Q ss_pred             CcceEEeeccccCCC------ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccc
Q 043655          286 KLKVLNWEYNAITAS------SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNY  359 (512)
Q Consensus       286 ~L~~L~~~~~~~~~~------~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~  359 (512)
                      .|++|....+...+.      ..+...|.|+++.+....+....    ...+..-+..|++|+.|+|.++.+..-.....
T Consensus       158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG----~~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEG----VTALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCch----hHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            777777766554322      23345578888877765543322    23456678899999999999987644333223


Q ss_pred             ccccccccccceEEEEeeccC-CcH-HHHHHHHhhCCCCcEEEEEeec
Q 043655          360 FTNLHTFTNLKSLELHTGFNK-HNV-QGLACLFRSSPSIHTLILKIIN  405 (512)
Q Consensus       360 ~~~~~~~~~L~~L~L~~~~~~-~~~-~~l~~~L~~cp~Le~L~l~~~~  405 (512)
                      ...++.+++|+.|.++.|... ... .-+..+-+..|+|+.|.+.+..
T Consensus       234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence            357788999999999987532 333 3345677788999999987643

>PLN03210 Resistant to P

Probab=98.38  E-value=7.5e-07  Score=101.99  Aligned_cols=171  Identities=20%  Similarity=0.202  Sum_probs=100.4

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      .++.+|++...  ....+|..+..+++|+.|+|+++.....+|.    ...+++|++|+|.+|.....  +..-+  .++
T Consensus       611 ~~L~~L~L~~s--~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~----ls~l~~Le~L~L~~c~~L~~--lp~si--~~L  680 (1153)
T PLN03210        611 ENLVKLQMQGS--KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD----LSMATNLETLKLSDCSSLVE--LPSSI--QYL  680 (1153)
T ss_pred             cCCcEEECcCc--cccccccccccCCCCCEEECCCCCCcCcCCc----cccCCcccEEEecCCCCccc--cchhh--hcc
Confidence            35555555432  2334566566788999999987533233432    23578999999988754321  11111  367


Q ss_pred             cccceeccccccccchhcc--cccccceeeeccccCccceeEeccCcceEEEeeeccccCC-------Cc----------
Q 043655          218 PHLKKLDLDACYGLKQLKV--GCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCD-------KS----------  278 (512)
Q Consensus       218 p~L~~L~L~~~~~l~~l~~--~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~-------~~----------  278 (512)
                      ++|+.|++.+|..+..+-.  .+++|+.|.+.+|..+..+.-..++|+.|.+.++......       ..          
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~  760 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE  760 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchh
Confidence            8899999988876655433  5688888888888766554433456666666554311000       00          


Q ss_pred             -----------eEEEeCCCcceEEeeccccCC--CccccCcccceeeEEeeEE
Q 043655          279 -----------WVKIDASKLKVLNWEYNAITA--SSSLENLASLHEASVGFIL  318 (512)
Q Consensus       279 -----------~~~i~~p~L~~L~~~~~~~~~--~~~l~~~~~L~~l~l~~~~  318 (512)
                                 ......++|+.|.+.++....  ...++++++|+.+++..|.
T Consensus       761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~  813 (1153)
T PLN03210        761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI  813 (1153)
T ss_pred             hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence                       000123577777777654211  1335678888888887654

syringae 6; Provisional

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.32  E-value=2e-07  Score=63.23  Aligned_cols=37  Identities=51%  Similarity=0.714  Sum_probs=31.1

Q ss_pred             cCCCChHHHHHHHccCCchhhHHHhhhcHhHHHhhcc
Q 043655           26 ISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCS   62 (512)
Q Consensus        26 is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~lw~~   62 (512)
                      |++||+|++.+||++|+.+|.++++.|||+|+++...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            6789999999999999999999999999999987543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.28  E-value=4.9e-08  Score=97.22  Aligned_cols=104  Identities=23%  Similarity=0.219  Sum_probs=57.3

Q ss_pred             cCCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      .++++|.+....-  ..+...-| +..+|..|+|++|.. -++|...  +..+|+|+.|.|..+++.-.+++    +..+
T Consensus       173 ~ni~~L~La~N~I--t~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~--Fk~L~~L~~LdLnrN~irive~l----tFqg  243 (873)
T KOG4194|consen  173 VNIKKLNLASNRI--TTLETGHFDSLNSLLTLKLSRNRI-TTLPQRS--FKRLPKLESLDLNRNRIRIVEGL----TFQG  243 (873)
T ss_pred             CCceEEeeccccc--cccccccccccchheeeecccCcc-cccCHHH--hhhcchhhhhhccccceeeehhh----hhcC
Confidence            4677777764332  22222222 455788888887421 2344322  34577888888877776543221    2246


Q ss_pred             Ccccceecccccc--cc-chhcccccccceeeecccc
Q 043655          217 FPHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       217 ~p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~  250 (512)
                      +|+|+.|.|...+  .+ ...+-+|.++|.|+|....
T Consensus       244 L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~  280 (873)
T KOG4194|consen  244 LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR  280 (873)
T ss_pred             chhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence            7777777776654  11 2344556666666666553

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.24  E-value=1.5e-06  Score=85.36  Aligned_cols=250  Identities=19%  Similarity=0.098  Sum_probs=133.6

Q ss_pred             ccCcccceEEeeeEEeeCcc--chhhhhcCCCCcccceecccccccc------c---hhcccccccceeeeccccCccce
Q 043655          187 GGFRSLHTLSLSLVILFNQP--CLLDLFTDSSFPHLKKLDLDACYGL------K---QLKVGCRALEDLTLDNCIQLCGL  255 (512)
Q Consensus       187 ~~~~~L~~L~L~~~~~~~~~--~l~~l~~~~~~p~L~~L~L~~~~~l------~---~l~~~cp~Le~L~l~~c~~l~~~  255 (512)
                      ..++.|+.|.|+++.+.+..  .+...+  ...|+|++|++.++..-      .   ..+..+++|+.|+|.+|......
T Consensus        20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l--~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   97 (319)
T cd00116          20 PKLLCLQVLRLEGNTLGEEAAKALASAL--RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG   97 (319)
T ss_pred             HHHhhccEEeecCCCCcHHHHHHHHHHH--hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence            45677999999988876532  222222  35677888888765411      1   22334667777777776532100


Q ss_pred             eEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC------ccccCc-ccceeeEEeeEEcccchhHHHH
Q 043655          256 DIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS------SSLENL-ASLHEASVGFILLHEDLTSAKL  328 (512)
Q Consensus       256 ~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~------~~l~~~-~~L~~l~l~~~~~~~~~~~~~~  328 (512)
                      .-.                  ...+.-. ++|++|+++++.+...      ..+..+ ++|+++++..+.....    ..
T Consensus        98 ~~~------------------~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----~~  154 (319)
T cd00116          98 CGV------------------LESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA----SC  154 (319)
T ss_pred             HHH------------------HHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch----HH
Confidence            000                  0000001 3455555554433210      112334 6777777776654321    12


Q ss_pred             hHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccC-CcHHHHHHHHhhCCCCcEEEEEeeccc
Q 043655          329 QSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNK-HNVQGLACLFRSSPSIHTLILKIINDY  407 (512)
Q Consensus       329 ~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~l~~~L~~cp~Le~L~l~~~~~~  407 (512)
                      ..+...+..+++++.|++..+.+............+.+++|++|+|..+.-. .....+...+..+|+|+.|++....-.
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            3345567778889999998776442111111123345579999999865322 233456677888999999999753211


Q ss_pred             chhhhcccccccCccCccchhhhhccccCchhhhcCccEEEEeeeccc-hhHHHHHHHHHhcCccccceEEEecc
Q 043655          408 KIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLEC-ENEVSLAKFLLKHGKALQEMTLCTGH  481 (512)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i~~~~g~-~~e~~l~~~ll~~a~~L~~m~i~~~~  481 (512)
                                         +................|+.+.+.+..-. .....+++.+ .+.+.|+.+.+....
T Consensus       235 -------------------~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~-~~~~~L~~l~l~~N~  289 (319)
T cd00116         235 -------------------DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVL-AEKESLLELDLRGNK  289 (319)
T ss_pred             -------------------hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHH-hcCCCccEEECCCCC
Confidence                               00000000000001368899988765432 2444555654 444888888887754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.19  E-value=1.4e-06  Score=56.73  Aligned_cols=33  Identities=48%  Similarity=0.728  Sum_probs=31.0

Q ss_pred             CChHHHHHHHccCCchhhHHHhhhcHhHHHhhc
Q 043655           29 LPDAILHHILFLLPIKSIAQTCTLSKRWRSLWC   61 (512)
Q Consensus        29 LPdevl~~Ils~L~~~d~~rts~lSrrWr~lw~   61 (512)
                      ||+|++.+||++|+.+|..+++.|||+|+.+..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~   33 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID   33 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999998653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=3.2e-07  Score=88.58  Aligned_cols=175  Identities=18%  Similarity=0.132  Sum_probs=108.0

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCcc-ccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGF-RLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      ..++++.++.+.......-...-.|++++.|+|+++  -+ ...+..-.+..+|+|+.|.|+.+.+....+-..   ...
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N--L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~  195 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN--LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---TLL  195 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhh--hHHhHHHHHHHHHhcccchhcccccccccCCccccc---hhh
Confidence            456666666544322222123446999999999984  22 111111135579999999999998875321110   125


Q ss_pred             Ccccceecccccc----ccchhcccccccceeeeccccCccceeEec---cCcceEEEeeeccccCCCceEEEeCCCcce
Q 043655          217 FPHLKKLDLDACY----GLKQLKVGCRALEDLTLDNCIQLCGLDIFG---TKLERLRVASCFDAYCDKSWVKIDASKLKV  289 (512)
Q Consensus       217 ~p~L~~L~L~~~~----~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~---~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~  289 (512)
                      +++|+.|.|.+|.    .+..+...||+|+.|.+....++.......   ..|+.|.|.+............-..|+|+.
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            8999999999996    577788899999999999986433222222   578888888764433222223335677777


Q ss_pred             EEeeccccCCC--------ccccCcccceeeEEeeE
Q 043655          290 LNWEYNAITAS--------SSLENLASLHEASVGFI  317 (512)
Q Consensus       290 L~~~~~~~~~~--------~~l~~~~~L~~l~l~~~  317 (512)
                      |.++.+.+++.        .....+|+|+.|.++..
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N  311 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN  311 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence            77666544322        11235566776666543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.03  E-value=1.2e-06  Score=87.58  Aligned_cols=316  Identities=18%  Similarity=0.163  Sum_probs=153.4

Q ss_pred             eeeeEEeeccCcchhhHHHHHHHhcCCceeEEEeccCCCCCCCcceec-cCCccEEEEecccCccccCCCccccccCccc
Q 043655          114 IRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVIT-SDSLRVFKLRSRYRGFRLPPSSVVAGGFRSL  192 (512)
Q Consensus       114 i~~l~l~~~~~~~~~~~wi~~~~~~~v~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L  192 (512)
                      ++.+.++...-...-..-+++.  .-++.|++.-..  ...+|..-|. -.++++|+|.+|  .++.-.. ..+.++.+|
T Consensus       127 l~~L~L~~N~I~sv~se~L~~l--~alrslDLSrN~--is~i~~~sfp~~~ni~~L~La~N--~It~l~~-~~F~~lnsL  199 (873)
T KOG4194|consen  127 LEKLDLRHNLISSVTSEELSAL--PALRSLDLSRNL--ISEIPKPSFPAKVNIKKLNLASN--RITTLET-GHFDSLNSL  199 (873)
T ss_pred             eeEEeeeccccccccHHHHHhH--hhhhhhhhhhch--hhcccCCCCCCCCCceEEeeccc--ccccccc-ccccccchh
Confidence            7777776632111111111221  335566665322  2233333343 478999999985  2322211 124568899


Q ss_pred             ceEEeeeEEeeCccchhhhhcCCCCcccceecccccc-c-cch-hcccccccceeeeccccC--cc-ceeEeccCcceEE
Q 043655          193 HTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY-G-LKQ-LKVGCRALEDLTLDNCIQ--LC-GLDIFGTKLERLR  266 (512)
Q Consensus       193 ~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~-~-l~~-l~~~cp~Le~L~l~~c~~--l~-~~~v~~~~L~~L~  266 (512)
                      .+|.|+.+++..-..  ..|  ..+|+|+.|+|.... . .+. -+.+.|+|+.|.+....-  ++ ..--...++++|.
T Consensus       200 ~tlkLsrNrittLp~--r~F--k~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~  275 (873)
T KOG4194|consen  200 LTLKLSRNRITTLPQ--RSF--KRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN  275 (873)
T ss_pred             eeeecccCcccccCH--HHh--hhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence            999999999876332  112  468999999998765 1 211 235778999998888642  11 1112224555555


Q ss_pred             EeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccch--hH-------------HHHh
Q 043655          267 VASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDL--TS-------------AKLQ  329 (512)
Q Consensus       267 l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~--~~-------------~~~~  329 (512)
                      +......... ...-.....|+.|+++.+.+...  -.-+.+++|+++++++.....-.  .+             ...+
T Consensus       276 L~~N~l~~vn-~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~  354 (873)
T KOG4194|consen  276 LETNRLQAVN-EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID  354 (873)
T ss_pred             cccchhhhhh-cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence            5442211000 00111223344444433322111  01123444555544443321100  00             0011


Q ss_pred             HHH-HHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHH-HHHHhhCCCCcEEEEEeeccc
Q 043655          330 SVS-NFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGL-ACLFRSSPSIHTLILKIINDY  407 (512)
Q Consensus       330 ~~~-~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l-~~~L~~cp~Le~L~l~~~~~~  407 (512)
                      .+. ..+.++++|+.|++..+.+....+. .......++.|+.|.+...    ....+ ..-+...++||.|++...--.
T Consensus       355 ~l~e~af~~lssL~~LdLr~N~ls~~IED-aa~~f~gl~~LrkL~l~gN----qlk~I~krAfsgl~~LE~LdL~~Naia  429 (873)
T KOG4194|consen  355 HLAEGAFVGLSSLHKLDLRSNELSWCIED-AAVAFNGLPSLRKLRLTGN----QLKSIPKRAFSGLEALEHLDLGDNAIA  429 (873)
T ss_pred             HHHhhHHHHhhhhhhhcCcCCeEEEEEec-chhhhccchhhhheeecCc----eeeecchhhhccCcccceecCCCCcce
Confidence            111 2355666667777666554332221 1123334666677766542    12222 234556677777766531100


Q ss_pred             chhhhcccccccCccCccchhhhhccccCchhhhcCccEEEEee--eccchhHHHHHHHHHhcCcc
Q 043655          408 KIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHG--FLECENEVSLAKFLLKHGKA  471 (512)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i~~--~~g~~~e~~l~~~ll~~a~~  471 (512)
                                    .+  ..    +   .++  .-+||++.|..  |-.+..-..|...+.++-..
T Consensus       430 --------------SI--q~----n---AFe--~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq  470 (873)
T KOG4194|consen  430 --------------SI--QP----N---AFE--PMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQ  470 (873)
T ss_pred             --------------ee--cc----c---ccc--cchhhhhhhcccceEEeccHHHHHHHHHhcccc
Confidence                          00  00    0   012  23899888854  66677777888888775443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.67  E-value=0.00018  Score=77.52  Aligned_cols=136  Identities=21%  Similarity=0.191  Sum_probs=65.3

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      .+-..|++.  ......+|..+.  ++|+.|.|.+|.. -.+|.      ..++|++|+|+++.+..-..        ..
T Consensus       201 ~~~~~LdLs--~~~LtsLP~~l~--~~L~~L~L~~N~L-t~LP~------lp~~Lk~LdLs~N~LtsLP~--------lp  261 (788)
T PRK15387        201 NGNAVLNVG--ESGLTTLPDCLP--AHITTLVIPDNNL-TSLPA------LPPELRTLEVSGNQLTSLPV--------LP  261 (788)
T ss_pred             CCCcEEEcC--CCCCCcCCcchh--cCCCEEEccCCcC-CCCCC------CCCCCcEEEecCCccCcccC--------cc
Confidence            344444443  233445676553  3677777776421 12332      25677888887776654221        23


Q ss_pred             cccceecccccc--c-----------------cchhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCc
Q 043655          218 PHLKKLDLDACY--G-----------------LKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKS  278 (512)
Q Consensus       218 p~L~~L~L~~~~--~-----------------l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~  278 (512)
                      ++|++|+|.++.  .                 +..+-...++|+.|++.++. +..+....++|+.|.+.+|....    
T Consensus       262 ~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~-L~~Lp~lp~~L~~L~Ls~N~L~~----  336 (788)
T PRK15387        262 PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTS----  336 (788)
T ss_pred             cccceeeccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCCCc-cccCCCCcccccccccccCcccc----
Confidence            455666555542  1                 11221223556666666653 22222112345555555543211    


Q ss_pred             eEEEeCCCcceEEeeccccC
Q 043655          279 WVKIDASKLKVLNWEYNAIT  298 (512)
Q Consensus       279 ~~~i~~p~L~~L~~~~~~~~  298 (512)
                       +.--.++|++|+++++.+.
T Consensus       337 -LP~lp~~Lq~LdLS~N~Ls  355 (788)
T PRK15387        337 -LPTLPSGLQELSVSDNQLA  355 (788)
T ss_pred             -ccccccccceEecCCCccC
Confidence             1101136777777766543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=2.3e-06  Score=82.86  Aligned_cols=207  Identities=20%  Similarity=0.220  Sum_probs=97.4

Q ss_pred             cCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccchhccccccc
Q 043655          162 SDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRAL  241 (512)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l~~~cp~L  241 (512)
                      .++|+...|.++  ....+...-+...||+++.|+|+.+-+.+-..+.                       .+....|+|
T Consensus       120 ~kkL~~IsLdn~--~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~-----------------------~i~eqLp~L  174 (505)
T KOG3207|consen  120 LKKLREISLDNY--RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVL-----------------------KIAEQLPSL  174 (505)
T ss_pred             HHhhhheeecCc--cccccchhhhhhhCCcceeecchhhhHHhHHHHH-----------------------HHHHhcccc
Confidence            456666666662  2333322223455677777777666665533333                       333344445


Q ss_pred             ceeeeccccCc----cceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeecccc-C-CCccccCcccceeeEEe
Q 043655          242 EDLTLDNCIQL----CGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAI-T-ASSSLENLASLHEASVG  315 (512)
Q Consensus       242 e~L~l~~c~~l----~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~-~-~~~~l~~~~~L~~l~l~  315 (512)
                      |.|+|+.....    .......+.|+.|.+..|-....+...+....|+|+.|.+.++.. . .......+..|++|+++
T Consensus       175 e~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs  254 (505)
T KOG3207|consen  175 ENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS  254 (505)
T ss_pred             hhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence            55544443211    011112355666666666443333344445566666666665521 0 11122334556666665


Q ss_pred             eEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccc--cccccccccccceEEEEeeccCCcHHHHHHHHhhC
Q 043655          316 FILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRN--YFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSS  393 (512)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~c  393 (512)
                      .....+-.       .......+++|+.|.++.+++..+..++  .......|++|++|.+.... ..++..+ .-++..
T Consensus       255 ~N~li~~~-------~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl-~~l~~l  325 (505)
T KOG3207|consen  255 NNNLIDFD-------QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSL-NHLRTL  325 (505)
T ss_pred             CCcccccc-------cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-ccccccc-chhhcc
Confidence            43322211       1123445666666666666555444332  11234467777777775431 1122222 223445


Q ss_pred             CCCcEEEEE
Q 043655          394 PSIHTLILK  402 (512)
Q Consensus       394 p~Le~L~l~  402 (512)
                      ++|+.|.+.
T Consensus       326 ~nlk~l~~~  334 (505)
T KOG3207|consen  326 ENLKHLRIT  334 (505)
T ss_pred             chhhhhhcc
Confidence            555555543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.62  E-value=5.2e-06  Score=86.49  Aligned_cols=41  Identities=22%  Similarity=0.368  Sum_probs=34.6

Q ss_pred             CCccCCCChHHHHHHHccCCchhhHHHhhhcHhHHHhhccC
Q 043655           23 IDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSF   63 (512)
Q Consensus        23 ~D~is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~lw~~~   63 (512)
                      .+.....|+.....+...++..+...+..++++|.......
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (482)
T KOG1947|consen   42 LRFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGSL   82 (482)
T ss_pred             eeeeeccccchhhhcccccccccccccchhhhhhhhhhhhh
Confidence            35567899999999999999999999999999998765443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.53  E-value=2.4e-05  Score=73.91  Aligned_cols=210  Identities=19%  Similarity=0.123  Sum_probs=120.1

Q ss_pred             cCcccceEEeeeEEeeC--ccchhhhhcCCCCcccceecccccc-------ccc---------hhcccccccceeeeccc
Q 043655          188 GFRSLHTLSLSLVILFN--QPCLLDLFTDSSFPHLKKLDLDACY-------GLK---------QLKVGCRALEDLTLDNC  249 (512)
Q Consensus       188 ~~~~L~~L~L~~~~~~~--~~~l~~l~~~~~~p~L~~L~L~~~~-------~l~---------~l~~~cp~Le~L~l~~c  249 (512)
                      ++|+|++|+|+.+.|..  ...+.++++  +|..|++|.|.+|.       .+.         .....-|.|+.+...+.
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~--s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLS--SCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHH--hccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            46677777777777654  345777775  58888888888885       111         11223477888877776


Q ss_pred             cCccce-------eEeccCcceEEEeeeccccCCCc---eEEEeCCCcceEEeeccccCCC------ccccCcccceeeE
Q 043655          250 IQLCGL-------DIFGTKLERLRVASCFDAYCDKS---WVKIDASKLKVLNWEYNAITAS------SSLENLASLHEAS  313 (512)
Q Consensus       250 ~~l~~~-------~v~~~~L~~L~l~~c~~~~~~~~---~~~i~~p~L~~L~~~~~~~~~~------~~l~~~~~L~~l~  313 (512)
                      ..-..-       .-..|+|+.+.+........+..   .-...+|+|+.|++.++.++..      ..+...|.|++++
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            521110       01126777776655432221110   0123688899999888765432      2344667888888


Q ss_pred             EeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhC
Q 043655          314 VGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSS  393 (512)
Q Consensus       314 l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~c  393 (512)
                      ++.|...+...   ...+..+-.+.|+|+.|.+.++.+..-........+...+.|+.|.|+.+.......++..+....
T Consensus       248 l~dcll~~~Ga---~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~  324 (382)
T KOG1909|consen  248 LGDCLLENEGA---IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKF  324 (382)
T ss_pred             ccccccccccH---HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhc
Confidence            88887644332   122334455578888888887764332211111122236788888887654433445666777666


Q ss_pred             CCCcEEEEE
Q 043655          394 PSIHTLILK  402 (512)
Q Consensus       394 p~Le~L~l~  402 (512)
                      +-...+...
T Consensus       325 ~~~~~~~~~  333 (382)
T KOG1909|consen  325 DTAHVLLED  333 (382)
T ss_pred             ccccccchh
Confidence            555444433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.51  E-value=9.4e-06  Score=84.55  Aligned_cols=64  Identities=33%  Similarity=0.488  Sum_probs=33.3

Q ss_pred             ccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc-----ccchhcccccccceeeeccccCc
Q 043655          187 GGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY-----GLKQLKVGCRALEDLTLDNCIQL  252 (512)
Q Consensus       187 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~-----~l~~l~~~cp~Le~L~l~~c~~l  252 (512)
                      ..+++|+.|+|.++...++.++..+..  .||+|++|.+.+|.     ++..+...||.|++|+|..|..+
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~--~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALAS--RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHh--hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            345556666665555444434444332  35566666555554     34455555566666666655543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.43  E-value=0.00018  Score=77.76  Aligned_cols=59  Identities=12%  Similarity=0.113  Sum_probs=32.7

Q ss_pred             CcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655          339 SHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII  404 (512)
Q Consensus       339 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~  404 (512)
                      ++|+.|+|+.+.+..+..     .  ...+|+.|++..+....-...+..++..+|++..|.+...
T Consensus       367 ~~L~~LdLs~N~Lt~LP~-----~--l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N  425 (754)
T PRK15370        367 PTITTLDVSRNALTNLPE-----N--LPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN  425 (754)
T ss_pred             CCcCEEECCCCcCCCCCH-----h--HHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCC
Confidence            356667766654432211     1  1125677776653222112356677777888888888653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.32  E-value=3.5e-05  Score=67.65  Aligned_cols=55  Identities=29%  Similarity=0.356  Sum_probs=14.2

Q ss_pred             CcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhcccccccceeeeccc
Q 043655          189 FRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNC  249 (512)
Q Consensus       189 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c  249 (512)
                      +.+|+.|+|+++.+..-+++      ..+++|++|++.+..  .+. .+...||+|++|.+.+.
T Consensus        41 l~~L~~L~Ls~N~I~~l~~l------~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N   98 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKLEGL------PGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN   98 (175)
T ss_dssp             -TT--EEE-TTS--S--TT----------TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred             hcCCCEEECCCCCCccccCc------cChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence            44445555554444432222      234445555554443  221 12223555555555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.30  E-value=0.00015  Score=63.67  Aligned_cols=107  Identities=21%  Similarity=0.192  Sum_probs=48.3

Q ss_pred             CCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHH-HHhhcCCcccEeeecchhhhhhccccccccc
Q 043655          285 SKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVS-NFLSGLSHARSLTLESPCIEILSNRNYFTNL  363 (512)
Q Consensus       285 p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~  363 (512)
                      .+|+.|+++++.+.....+..++.|+.+.++.....+         +. .+...+++|+.|.++.+.+..+.+-   ..+
T Consensus        42 ~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~---------i~~~l~~~lp~L~~L~L~~N~I~~l~~l---~~L  109 (175)
T PF14580_consen   42 DKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISS---------ISEGLDKNLPNLQELYLSNNKISDLNEL---EPL  109 (175)
T ss_dssp             TT--EEE-TTS--S--TT----TT--EEE--SS---S----------CHHHHHH-TT--EEE-TTS---SCCCC---GGG
T ss_pred             cCCCEEECCCCCCccccCccChhhhhhcccCCCCCCc---------cccchHHhCCcCCEEECcCCcCCChHHh---HHH
Confidence            4666677776666555556677788888776543221         21 2335689999999998886555432   355


Q ss_pred             ccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          364 HTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       364 ~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      ..+++|+.|+|...+......-=..++..+|+|+.|+-.-
T Consensus       110 ~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen  110 SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            5789999999976543222233467889999999997654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.19  E-value=0.0008  Score=72.65  Aligned_cols=155  Identities=17%  Similarity=0.128  Sum_probs=92.6

Q ss_pred             CCccEEEEecccCcc-ccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccchhccccccc
Q 043655          163 DSLRVFKLRSRYRGF-RLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRAL  241 (512)
Q Consensus       163 ~~L~~L~L~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l~~~cp~L  241 (512)
                      ..-..|+|+.+  .+ .+|+. .    .++|+.|.|.++.+..-.        ...|+|++|+|.++. +..+-...++|
T Consensus       201 ~~~~~LdLs~~--~LtsLP~~-l----~~~L~~L~L~~N~Lt~LP--------~lp~~Lk~LdLs~N~-LtsLP~lp~sL  264 (788)
T PRK15387        201 NGNAVLNVGES--GLTTLPDC-L----PAHITTLVIPDNNLTSLP--------ALPPELRTLEVSGNQ-LTSLPVLPPGL  264 (788)
T ss_pred             CCCcEEEcCCC--CCCcCCcc-h----hcCCCEEEccCCcCCCCC--------CCCCCCcEEEecCCc-cCcccCccccc
Confidence            34567888874  33 34432 1    358999999988776522        236899999998873 44443345789


Q ss_pred             ceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEeeEEccc
Q 043655          242 EDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHE  321 (512)
Q Consensus       242 e~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~  321 (512)
                      +.|++.++. +..+...-++|+.|.+.++...     .+....|+|+.|+++++.+.....  ..+.|..++++.+....
T Consensus       265 ~~L~Ls~N~-L~~Lp~lp~~L~~L~Ls~N~Lt-----~LP~~p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~L~~  336 (788)
T PRK15387        265 LELSIFSNP-LTHLPALPSGLCKLWIFGNQLT-----SLPVLPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTS  336 (788)
T ss_pred             ceeeccCCc-hhhhhhchhhcCEEECcCCccc-----cccccccccceeECCCCccccCCC--CcccccccccccCcccc
Confidence            999998875 3333323367888888776432     222235789999998876543211  12356666555432110


Q ss_pred             chhHHHHhHHHHHhhcCCcccEeeecchhhhh
Q 043655          322 DLTSAKLQSVSNFLSGLSHARSLTLESPCIEI  353 (512)
Q Consensus       322 ~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~  353 (512)
                                  +..-..+|+.|+++.+.+..
T Consensus       337 ------------LP~lp~~Lq~LdLS~N~Ls~  356 (788)
T PRK15387        337 ------------LPTLPSGLQELSVSDNQLAS  356 (788)
T ss_pred             ------------ccccccccceEecCCCccCC
Confidence                        01111367888887766543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.96  E-value=0.00023  Score=76.26  Aligned_cols=155  Identities=17%  Similarity=0.143  Sum_probs=98.3

Q ss_pred             cccceeeeccccCcc-----ceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeE
Q 043655          239 RALEDLTLDNCIQLC-----GLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEAS  313 (512)
Q Consensus       239 p~Le~L~l~~c~~l~-----~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~  313 (512)
                      .+|+.|+|.+-..+.     .+.-.-|+|++|.+.+-....+....+..+-|||.+|+++|..+.....++.+++|+.+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            678888888754332     222223899999998854332222334456799999999999887776777888888776


Q ss_pred             EeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhc--ccccccccccccccceEEEEeeccCCcHHHHHHHHh
Q 043655          314 VGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILS--NRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFR  391 (512)
Q Consensus       314 l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~  391 (512)
                      +-.-.....      ..+.. +-.+.+|+.|+|+........  .....+-.-.+|+||.|+.+..  ..+...+..+++
T Consensus       202 mrnLe~e~~------~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT--di~~~~le~ll~  272 (699)
T KOG3665|consen  202 MRNLEFESY------QDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT--DINEEILEELLN  272 (699)
T ss_pred             ccCCCCCch------hhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc--chhHHHHHHHHH
Confidence            654332221      12222 445889999999864321111  0001112224789999988742  344567889999


Q ss_pred             hCCCCcEEEEE
Q 043655          392 SSPSIHTLILK  402 (512)
Q Consensus       392 ~cp~Le~L~l~  402 (512)
                      .=|+|+.+.+-
T Consensus       273 sH~~L~~i~~~  283 (699)
T KOG3665|consen  273 SHPNLQQIAAL  283 (699)
T ss_pred             hCccHhhhhhh
Confidence            99999988754

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.74  E-value=3.9e-05  Score=77.69  Aligned_cols=48  Identities=17%  Similarity=0.219  Sum_probs=25.4

Q ss_pred             CCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC
Q 043655          153 FNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN  204 (512)
Q Consensus       153 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  204 (512)
                      ..+|..+|....|+.|+|++|  .++-.|...  ..-+++-.|+|+++.+..
T Consensus        93 sGiP~diF~l~dLt~lDLShN--qL~EvP~~L--E~AKn~iVLNLS~N~Iet  140 (1255)
T KOG0444|consen   93 SGIPTDIFRLKDLTILDLSHN--QLREVPTNL--EYAKNSIVLNLSYNNIET  140 (1255)
T ss_pred             CCCCchhcccccceeeecchh--hhhhcchhh--hhhcCcEEEEcccCcccc
Confidence            456667777777777777763  222222211  123455566666655543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.71  E-value=0.0001  Score=78.04  Aligned_cols=62  Identities=18%  Similarity=0.165  Sum_probs=31.0

Q ss_pred             hhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          335 LSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       335 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      +..++.++.++++.+.++......   ..|. ++|++|++......   ..=..-|+.|.++..+++..
T Consensus       448 ~~~l~qL~~lDlS~N~L~~~~l~~---~~p~-p~LkyLdlSGN~~l---~~d~~~l~~l~~l~~~~i~~  509 (1081)
T KOG0618|consen  448 LAQLPQLKVLDLSCNNLSEVTLPE---ALPS-PNLKYLDLSGNTRL---VFDHKTLKVLKSLSQMDITL  509 (1081)
T ss_pred             hhhcCcceEEecccchhhhhhhhh---hCCC-cccceeeccCCccc---ccchhhhHHhhhhhheeccc
Confidence            445566777777766655544321   2222 67777777654211   11123344455555555544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.67  E-value=0.00039  Score=66.93  Aligned_cols=99  Identities=24%  Similarity=0.250  Sum_probs=67.6

Q ss_pred             eCCCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccc
Q 043655          283 DASKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYF  360 (512)
Q Consensus       283 ~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~  360 (512)
                      ..|+|+.|+++++.++..  ..++++..+++++++-....        ..-..+++++++|++|.+.++.+..+..    
T Consensus       272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~--------~v~~~~f~~ls~L~tL~L~~N~it~~~~----  339 (498)
T KOG4237|consen  272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE--------FVSSGMFQGLSGLKTLSLYDNQITTVAP----  339 (498)
T ss_pred             hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH--------HHHHHhhhccccceeeeecCCeeEEEec----
Confidence            457888888888766433  45677788888887644221        1124578999999999999887655543    


Q ss_pred             cccccccccceEEEEeecc--CCcHHHHHHHHhhC
Q 043655          361 TNLHTFTNLKSLELHTGFN--KHNVQGLACLFRSS  393 (512)
Q Consensus       361 ~~~~~~~~L~~L~L~~~~~--~~~~~~l~~~L~~c  393 (512)
                      ..+.....|..|.|-....  ++-..|+..++++-
T Consensus       340 ~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~  374 (498)
T KOG4237|consen  340 GAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKK  374 (498)
T ss_pred             ccccccceeeeeehccCcccCccchHHHHHHHhhC
Confidence            2444666788888765332  45578888888864

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.65  E-value=0.0036  Score=67.93  Aligned_cols=198  Identities=19%  Similarity=0.182  Sum_probs=102.9

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      .+...|.+.  ......+|..+  .+.|+.|+|++|... .+|..     .+++|++|+|+++.+..-.   .    .-.
T Consensus       178 ~~~~~L~L~--~~~LtsLP~~I--p~~L~~L~Ls~N~Lt-sLP~~-----l~~nL~~L~Ls~N~LtsLP---~----~l~  240 (754)
T PRK15370        178 NNKTELRLK--ILGLTTIPACI--PEQITTLILDNNELK-SLPEN-----LQGNIKTLYANSNQLTSIP---A----TLP  240 (754)
T ss_pred             cCceEEEeC--CCCcCcCCccc--ccCCcEEEecCCCCC-cCChh-----hccCCCEEECCCCccccCC---h----hhh
Confidence            344444443  23344566554  357889999885322 34321     2468999999888775421   1    123


Q ss_pred             cccceeccccccccchhcc-cccccceeeeccccCccceeE-eccCcceEEEeeeccccCCCceEEEeCCCcceEEeecc
Q 043655          218 PHLKKLDLDACYGLKQLKV-GCRALEDLTLDNCIQLCGLDI-FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYN  295 (512)
Q Consensus       218 p~L~~L~L~~~~~l~~l~~-~cp~Le~L~l~~c~~l~~~~v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~  295 (512)
                      ++|+.|+|.++. +..+-. -...|+.|++.++. +..+.- ..++|+.|.+.+|..... ...   -.++|+.|.+.++
T Consensus       241 ~~L~~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N~Lt~L-P~~---lp~sL~~L~Ls~N  314 (754)
T PRK15370        241 DTIQEMELSINR-ITELPERLPSALQSLDLFHNK-ISCLPENLPEELRYLSVYDNSIRTL-PAH---LPSGITHLNVQSN  314 (754)
T ss_pred             ccccEEECcCCc-cCcCChhHhCCCCEEECcCCc-cCccccccCCCCcEEECCCCccccC-ccc---chhhHHHHHhcCC
Confidence            578888888775 222211 12468888887653 333321 124788888877633211 000   1235777777665


Q ss_pred             ccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEE
Q 043655          296 AITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELH  375 (512)
Q Consensus       296 ~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  375 (512)
                      .+.... ....++|+.++++.+....         +...+  .++|+.|+++.+.+..+..     ..  .++|++|+|.
T Consensus       315 ~Lt~LP-~~l~~sL~~L~Ls~N~Lt~---------LP~~l--~~sL~~L~Ls~N~L~~LP~-----~l--p~~L~~LdLs  375 (754)
T PRK15370        315 SLTALP-ETLPPGLKTLEAGENALTS---------LPASL--PPELQVLDVSKNQITVLPE-----TL--PPTITTLDVS  375 (754)
T ss_pred             ccccCC-ccccccceeccccCCcccc---------CChhh--cCcccEEECCCCCCCcCCh-----hh--cCCcCEEECC
Confidence            543211 1123566666665443211         00001  2467777777665432211     11  2467777776


Q ss_pred             ee
Q 043655          376 TG  377 (512)
Q Consensus       376 ~~  377 (512)
                      .+
T Consensus       376 ~N  377 (754)
T PRK15370        376 RN  377 (754)
T ss_pred             CC
Confidence            53

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.65  E-value=8.1e-05  Score=75.45  Aligned_cols=87  Identities=20%  Similarity=0.239  Sum_probs=51.4

Q ss_pred             CCCCcceeccCCccEEEEecccCcc-ccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--
Q 043655          153 FNLPRCVITSDSLRVFKLRSRYRGF-RLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--  229 (512)
Q Consensus       153 ~~lp~~l~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--  229 (512)
                      ..+|..+-.+++++.|+|..  ..+ .+|.   ...++.+|++|++.++.+..-  .+++   +.+|.|+.+.+....  
T Consensus        22 ~~FP~~v~qMt~~~WLkLnr--t~L~~vPe---EL~~lqkLEHLs~~HN~L~~v--hGEL---s~Lp~LRsv~~R~N~LK   91 (1255)
T KOG0444|consen   22 DRFPHDVEQMTQMTWLKLNR--TKLEQVPE---ELSRLQKLEHLSMAHNQLISV--HGEL---SDLPRLRSVIVRDNNLK   91 (1255)
T ss_pred             CcCchhHHHhhheeEEEech--hhhhhChH---HHHHHhhhhhhhhhhhhhHhh--hhhh---ccchhhHHHhhhccccc
Confidence            46777777788888888876  222 2332   234677888888887776652  1222   356777777776543  


Q ss_pred             --ccchhcccccccceeeeccc
Q 043655          230 --GLKQLKVGCRALEDLTLDNC  249 (512)
Q Consensus       230 --~l~~l~~~cp~Le~L~l~~c  249 (512)
                        ++..=+.+...|..|+|+..
T Consensus        92 nsGiP~diF~l~dLt~lDLShN  113 (1255)
T KOG0444|consen   92 NSGIPTDIFRLKDLTILDLSHN  113 (1255)
T ss_pred             cCCCCchhcccccceeeecchh
Confidence              33333334455555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.63  E-value=0.00084  Score=62.35  Aligned_cols=103  Identities=25%  Similarity=0.263  Sum_probs=64.3

Q ss_pred             CCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccc
Q 043655          284 ASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNL  363 (512)
Q Consensus       284 ~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~  363 (512)
                      .|.++.|.++.+.+.....+..+++|++++++...         ...+..+-..+.|+++|.+..+.++.++      .+
T Consensus       306 ~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~---------Ls~~~Gwh~KLGNIKtL~La~N~iE~LS------GL  370 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNL---------LAECVGWHLKLGNIKTLKLAQNKIETLS------GL  370 (490)
T ss_pred             ccceeEEeccccceeeehhhhhcccceEeecccch---------hHhhhhhHhhhcCEeeeehhhhhHhhhh------hh
Confidence            57777777776655444446677788888777543         2233444556777888888877766654      33


Q ss_pred             ccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          364 HTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       364 ~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      ..+-.|..|++..+  ...-..-..-+.+.|+||.|.+..
T Consensus       371 ~KLYSLvnLDl~~N--~Ie~ldeV~~IG~LPCLE~l~L~~  408 (490)
T KOG1259|consen  371 RKLYSLVNLDLSSN--QIEELDEVNHIGNLPCLETLRLTG  408 (490)
T ss_pred             Hhhhhheecccccc--chhhHHHhcccccccHHHHHhhcC
Confidence            45667778877653  111112234567888888888765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.0018  Score=60.19  Aligned_cols=183  Identities=13%  Similarity=0.070  Sum_probs=97.2

Q ss_pred             cCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccchhcccccccceeeeccccC---ccceeEeccCcce
Q 043655          188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQ---LCGLDIFGTKLER  264 (512)
Q Consensus       188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l~~~cp~Le~L~l~~c~~---l~~~~v~~~~L~~  264 (512)
                      .+.+++.|+|.++.+.+-..+                       ..++.+.|.|+.|+|.....   +..+.....+|+.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI-----------------------~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEI-----------------------GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             HhhhhhhhhcccchhccHHHH-----------------------HHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            455666666666665553333                       34455566666666665543   2223333456777


Q ss_pred             EEEeeeccccCCCceEEEeCCCcceEEeeccccCC----CccccCc-ccceeeEEeeEEcccchhHHHHhHHHHHhhcCC
Q 043655          265 LRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITA----SSSLENL-ASLHEASVGFILLHEDLTSAKLQSVSNFLSGLS  339 (512)
Q Consensus       265 L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~----~~~l~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~  339 (512)
                      |.+.+..-.+....+..-+.|.++.|+++.+....    ...++.. +.+..+.+.-|      ......+..++.+-+|
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c------~~~~w~~~~~l~r~Fp  199 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPC------LEQLWLNKNKLSRIFP  199 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCc------HHHHHHHHHhHHhhcc
Confidence            77766543322233333455666666655542110    0111111 12222222211      1223455677788899


Q ss_pred             cccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655          340 HARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII  404 (512)
Q Consensus       340 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~  404 (512)
                      ++..+.++.+.++....+.   ...+++.+--|.|+.. +-.+++++ .-|..+|.|..|.+..+
T Consensus       200 nv~sv~v~e~PlK~~s~ek---~se~~p~~~~LnL~~~-~idswasv-D~Ln~f~~l~dlRv~~~  259 (418)
T KOG2982|consen  200 NVNSVFVCEGPLKTESSEK---GSEPFPSLSCLNLGAN-NIDSWASV-DALNGFPQLVDLRVSEN  259 (418)
T ss_pred             cchheeeecCcccchhhcc---cCCCCCcchhhhhccc-ccccHHHH-HHHcCCchhheeeccCC
Confidence            9999999988766655443   3334555556777653 22344443 44678999999988643

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.46  E-value=0.0005  Score=73.03  Aligned_cols=225  Identities=20%  Similarity=0.208  Sum_probs=112.4

Q ss_pred             CCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCcc-chhhhhcCCCC
Q 043655          139 NVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQP-CLLDLFTDSSF  217 (512)
Q Consensus       139 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~l~~l~~~~~~  217 (512)
                      +++-..+++.......+|..+-....|+.|+++.++. ...|.   ......+|+.|.|.++.+...+ ++      +..
T Consensus        44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i-~~vp~---s~~~~~~l~~lnL~~n~l~~lP~~~------~~l  113 (1081)
T KOG0618|consen   44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI-RSVPS---SCSNMRNLQYLNLKNNRLQSLPASI------SEL  113 (1081)
T ss_pred             eeeeEEeeccccccccCCchhhhHHHHhhcccchhhH-hhCch---hhhhhhcchhheeccchhhcCchhH------Hhh
Confidence            4443344444444556777777778888888887532 12332   2236778888888887766432 22      356


Q ss_pred             cccceecccccc--ccchhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcce-EEeec
Q 043655          218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKV-LNWEY  294 (512)
Q Consensus       218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~-L~~~~  294 (512)
                      .+|+.|++++..  .+...+..|..++.+...+...+..+....  ++.+.+.....    ...+.++-.+|+. |++..
T Consensus       114 knl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~--ik~~~l~~n~l----~~~~~~~i~~l~~~ldLr~  187 (1081)
T KOG0618|consen  114 KNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS--IKKLDLRLNVL----GGSFLIDIYNLTHQLDLRY  187 (1081)
T ss_pred             hcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcccc--chhhhhhhhhc----ccchhcchhhhheeeeccc
Confidence            788888887765  344555667777777777663333332222  33333333211    1223333444444 45444


Q ss_pred             cccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEE
Q 043655          295 NAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLEL  374 (512)
Q Consensus       295 ~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L  374 (512)
                      +... ...+.+++.|+.+.......            ..+--..++++.|+...+.+...      ...|.-.||+.++|
T Consensus       188 N~~~-~~dls~~~~l~~l~c~rn~l------------s~l~~~g~~l~~L~a~~n~l~~~------~~~p~p~nl~~~di  248 (1081)
T KOG0618|consen  188 NEME-VLDLSNLANLEVLHCERNQL------------SELEISGPSLTALYADHNPLTTL------DVHPVPLNLQYLDI  248 (1081)
T ss_pred             chhh-hhhhhhccchhhhhhhhccc------------ceEEecCcchheeeeccCcceee------ccccccccceeeec
Confidence            4332 22233333333322211100            00011123344444443332211      13334456777776


Q ss_pred             EeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655          375 HTGFNKHNVQGLACLFRSSPSIHTLILK  402 (512)
Q Consensus       375 ~~~~~~~~~~~l~~~L~~cp~Le~L~l~  402 (512)
                      +..    ....++.++..|++|+.|.+.
T Consensus       249 s~n----~l~~lp~wi~~~~nle~l~~n  272 (1081)
T KOG0618|consen  249 SHN----NLSNLPEWIGACANLEALNAN  272 (1081)
T ss_pred             chh----hhhcchHHHHhcccceEeccc
Confidence            542    233555666777777777664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.34  E-value=0.0003  Score=75.36  Aligned_cols=106  Identities=22%  Similarity=0.171  Sum_probs=55.1

Q ss_pred             cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccccccceeeeccccCccceeEe----ccC
Q 043655          188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIF----GTK  261 (512)
Q Consensus       188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~----~~~  261 (512)
                      -||+|++|.+++..+.+++ +..+.  .++|+|..|+++++.  .+ .-++..++||.|.+.+-+-....++.    -.+
T Consensus       146 ~LPsL~sL~i~~~~~~~~d-F~~lc--~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~  221 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDD-FSQLC--ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK  221 (699)
T ss_pred             hCcccceEEecCceecchh-HHHHh--hccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence            4677777777766665543 44444  367777777776654  33 22345566666666654322111111    155


Q ss_pred             cceEEEeeeccccCC-----CceEEEeCCCcceEEeecccc
Q 043655          262 LERLRVASCFDAYCD-----KSWVKIDASKLKVLNWEYNAI  297 (512)
Q Consensus       262 L~~L~l~~c~~~~~~-----~~~~~i~~p~L~~L~~~~~~~  297 (512)
                      |+.|.|+.-......     -.......|+|+.|+.+|..+
T Consensus       222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            666666553222111     011123467777777777654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.98  E-value=0.003  Score=58.00  Aligned_cols=117  Identities=18%  Similarity=0.150  Sum_probs=66.3

Q ss_pred             EeCCCcceEEeeccccCCC------ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhc
Q 043655          282 IDASKLKVLNWEYNAITAS------SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILS  355 (512)
Q Consensus       282 i~~p~L~~L~~~~~~~~~~------~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~  355 (512)
                      .+.|.|+++....+.+...      ..+..-..|+.+.+....+.....   ..-+..-+.-+.+|+.|+|..+++....
T Consensus       154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv---~~L~~~gl~y~~~LevLDlqDNtft~~g  230 (388)
T COG5238         154 ADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGV---TMLAFLGLFYSHSLEVLDLQDNTFTLEG  230 (388)
T ss_pred             ccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchh---HHHHHHHHHHhCcceeeeccccchhhhh
Confidence            4678898888766554221      111112466666666554332211   0112223556788999999988754433


Q ss_pred             ccccccccccccccceEEEEeeccCCcHHHHHHHHhhC-----CCCcEEEEEe
Q 043655          356 NRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSS-----PSIHTLILKI  403 (512)
Q Consensus       356 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~c-----p~Le~L~l~~  403 (512)
                      ...+....+.+++|+.|.+..|...  ..+...+++.+     |+|..|-.+.
T Consensus       231 S~~La~al~~W~~lrEL~lnDClls--~~G~~~v~~~f~e~~~p~l~~L~~~Y  281 (388)
T COG5238         231 SRYLADALCEWNLLRELRLNDCLLS--NEGVKSVLRRFNEKFVPNLMPLPGDY  281 (388)
T ss_pred             HHHHHHHhcccchhhhccccchhhc--cccHHHHHHHhhhhcCCCccccccch
Confidence            3222246678889999999887532  12444444443     6776665543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=95.79  E-value=0.0052  Score=43.72  Aligned_cols=39  Identities=26%  Similarity=0.303  Sum_probs=22.4

Q ss_pred             CCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC
Q 043655          163 DSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN  204 (512)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  204 (512)
                      ++|++|.|++|.. -.+++.  ...++++|++|+++++.+..
T Consensus         1 p~L~~L~l~~n~l-~~i~~~--~f~~l~~L~~L~l~~N~l~~   39 (61)
T PF13855_consen    1 PNLESLDLSNNKL-TEIPPD--SFSNLPNLETLDLSNNNLTS   39 (61)
T ss_dssp             TTESEEEETSSTE-SEECTT--TTTTGTTESEEEETSSSESE
T ss_pred             CcCcEEECCCCCC-CccCHH--HHcCCCCCCEeEccCCccCc
Confidence            4677788877421 133332  23457777777777666643

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=95.29  E-value=0.014  Score=41.53  Aligned_cols=57  Identities=32%  Similarity=0.341  Sum_probs=31.4

Q ss_pred             cccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhcccccccceeeecccc
Q 043655          190 RSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       190 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~  250 (512)
                      |+|++|.|+++.+..-+.  +.+  .++|+|++|++.++.  .+. ..+.++++|+.|++.+|.
T Consensus         1 p~L~~L~l~~n~l~~i~~--~~f--~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPP--DSF--SNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECT--TTT--TTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCH--HHH--cCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            456666666665543110  111  356777777776554  222 345566777777776653

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.11  E-value=0.03  Score=55.78  Aligned_cols=135  Identities=13%  Similarity=0.111  Sum_probs=68.5

Q ss_pred             ccCCccEEEEecccCccccCCCccccccCc-ccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccchhccccc
Q 043655          161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFR-SLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCR  239 (512)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l~~~cp  239 (512)
                      .|.++.+|++++|  .++..|      .+| +|++|.+++|.-..  .+.+    .-.++|++|.+.+|..+..+   -+
T Consensus        50 ~~~~l~~L~Is~c--~L~sLP------~LP~sLtsL~Lsnc~nLt--sLP~----~LP~nLe~L~Ls~Cs~L~sL---P~  112 (426)
T PRK15386         50 EARASGRLYIKDC--DIESLP------VLPNELTEITIENCNNLT--TLPG----SIPEGLEKLTVCHCPEISGL---PE  112 (426)
T ss_pred             HhcCCCEEEeCCC--CCcccC------CCCCCCcEEEccCCCCcc--cCCc----hhhhhhhheEccCccccccc---cc
Confidence            3688899999885  222212      233 68888887653211  1111    12357888888877655433   24


Q ss_pred             ccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEE-EeCCCcceEEeeccccCCCccccCcccceeeEEee
Q 043655          240 ALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVK-IDASKLKVLNWEYNAITASSSLENLASLHEASVGF  316 (512)
Q Consensus       240 ~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~-i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~  316 (512)
                      .|+.|.+.. .....+..--++|+.|.+.++....  ...+. .--++|++|.+.++...... -.--.+|+.++++.
T Consensus       113 sLe~L~L~~-n~~~~L~~LPssLk~L~I~~~n~~~--~~~lp~~LPsSLk~L~Is~c~~i~LP-~~LP~SLk~L~ls~  186 (426)
T PRK15386        113 SVRSLEIKG-SATDSIKNVPNGLTSLSINSYNPEN--QARIDNLISPSLKTLSLTGCSNIILP-EKLPESLQSITLHI  186 (426)
T ss_pred             ccceEEeCC-CCCcccccCcchHhheecccccccc--ccccccccCCcccEEEecCCCcccCc-ccccccCcEEEecc
Confidence            577777653 2222333333577777774421110  00000 12257888887765422110 01124666666653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=94.92  E-value=0.012  Score=55.57  Aligned_cols=36  Identities=33%  Similarity=0.487  Sum_probs=34.2

Q ss_pred             CCccCCCC----hHHHHHHHccCCchhhHHHhhhcHhHHH
Q 043655           23 IDRISDLP----DAILHHILFLLPIKSIAQTCTLSKRWRS   58 (512)
Q Consensus        23 ~D~is~LP----devl~~Ils~L~~~d~~rts~lSrrWr~   58 (512)
                      .|-|+.||    |+|..+|||+|+..++..+-.|||+|+.
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r  111 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR  111 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence            57899999    9999999999999999999999999985

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=94.11  E-value=0.21  Score=55.45  Aligned_cols=168  Identities=19%  Similarity=0.120  Sum_probs=85.7

Q ss_pred             eeEEeeccCcchhhHHHHHHHhcCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceE
Q 043655          116 VLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTL  195 (512)
Q Consensus       116 ~l~l~~~~~~~~~~~wi~~~~~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L  195 (512)
                      .-+++.+.-...+.-|++......-+...+. .+.+....|... +-...++..+-++. ...++.    ...++.|++|
T Consensus       478 ~~~~kmHDvvRe~al~ias~~~~~~e~~iv~-~~~~~~~~~~~~-~~~~~rr~s~~~~~-~~~~~~----~~~~~~L~tL  550 (889)
T KOG4658|consen  478 KETVKMHDVVREMALWIASDFGKQEENQIVS-DGVGLSEIPQVK-SWNSVRRMSLMNNK-IEHIAG----SSENPKLRTL  550 (889)
T ss_pred             eeEEEeeHHHHHHHHHHhccccccccceEEE-CCcCcccccccc-chhheeEEEEeccc-hhhccC----CCCCCccceE
Confidence            3444444334456667666544334442222 111223344332 23455566655421 112221    2357788888


Q ss_pred             EeeeEE--eeCccchhhhhcCCCCcccceeccccccccchh---cccccccceeeeccccCccceeEec---cCcceEEE
Q 043655          196 SLSLVI--LFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQL---KVGCRALEDLTLDNCIQLCGLDIFG---TKLERLRV  267 (512)
Q Consensus       196 ~L~~~~--~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l---~~~cp~Le~L~l~~c~~l~~~~v~~---~~L~~L~l  267 (512)
                      -+..+.  +....  .++|  .+.|.|..|+|++|..+..+   ++..-+|+.|++.++. +..+...-   ..|.+|++
T Consensus       551 ll~~n~~~l~~is--~~ff--~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl  625 (889)
T KOG4658|consen  551 LLQRNSDWLLEIS--GEFF--RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNL  625 (889)
T ss_pred             EEeecchhhhhcC--HHHH--hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheecc
Confidence            888765  22211  1112  36899999999987754444   6677788888888875 33222222   34555666


Q ss_pred             eeeccccCCCceEEEeCCCcceEEeeccc
Q 043655          268 ASCFDAYCDKSWVKIDASKLKVLNWEYNA  296 (512)
Q Consensus       268 ~~c~~~~~~~~~~~i~~p~L~~L~~~~~~  296 (512)
                      ..+..... ...+.-..++|++|.+.+..
T Consensus       626 ~~~~~l~~-~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  626 EVTGRLES-IPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccccc-ccchhhhcccccEEEeeccc
Confidence            55322111 11122236788888776653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.09  E-value=0.0061  Score=56.28  Aligned_cols=52  Identities=19%  Similarity=0.191  Sum_probs=28.9

Q ss_pred             CcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEe
Q 043655          261 KLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVG  315 (512)
Q Consensus       261 ~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~  315 (512)
                      +.++|+.++|....   .++...+|.|+.|.++-+.+.....+..|.+|+++++.
T Consensus        20 ~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLR   71 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLR   71 (388)
T ss_pred             HhhhhcccCCCccH---HHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHH
Confidence            45666666663221   12223567777777766655554555556666665553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=93.93  E-value=0.045  Score=51.23  Aligned_cols=100  Identities=19%  Similarity=0.100  Sum_probs=67.4

Q ss_pred             CcceEEeeccccCCC-ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccc
Q 043655          286 KLKVLNWEYNAITAS-SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLH  364 (512)
Q Consensus       286 ~L~~L~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~  364 (512)
                      .|+.++++++.+... ....-+|.++.++++......-          .-++.+++++.|+++++.+.....     +-.
T Consensus       285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v----------~nLa~L~~L~~LDLS~N~Ls~~~G-----wh~  349 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV----------QNLAELPQLQLLDLSGNLLAECVG-----WHL  349 (490)
T ss_pred             hhhhccccccchhhhhhhhhhccceeEEeccccceeee----------hhhhhcccceEeecccchhHhhhh-----hHh
Confidence            588888888766432 3445678999988886654322          127788999999999887644432     444


Q ss_pred             cccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEeec
Q 043655          365 TFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIIN  405 (512)
Q Consensus       365 ~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~~  405 (512)
                      .+.|++.|.|..+.- .+    .+-|...-+|+.|++....
T Consensus       350 KLGNIKtL~La~N~i-E~----LSGL~KLYSLvnLDl~~N~  385 (490)
T KOG1259|consen  350 KLGNIKTLKLAQNKI-ET----LSGLRKLYSLVNLDLSSNQ  385 (490)
T ss_pred             hhcCEeeeehhhhhH-hh----hhhhHhhhhheeccccccc
Confidence            788999998865311 12    2345667788888887543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.83  E-value=0.021  Score=53.34  Aligned_cols=176  Identities=15%  Similarity=0.130  Sum_probs=92.2

Q ss_pred             ccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc----ccchhcccccccceeeeccccC----ccc--ee
Q 043655          187 GGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY----GLKQLKVGCRALEDLTLDNCIQ----LCG--LD  256 (512)
Q Consensus       187 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~----~l~~l~~~cp~Le~L~l~~c~~----l~~--~~  256 (512)
                      .++|+|++|+|+++.+..+-+-  +  .....+|++|.|.+..    ....++...|.+++|+++....    +++  .+
T Consensus        94 e~lP~l~~LNls~N~L~s~I~~--l--p~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e  169 (418)
T KOG2982|consen   94 EQLPALTTLNLSCNSLSSDIKS--L--PLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE  169 (418)
T ss_pred             hcCccceEeeccCCcCCCcccc--C--cccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccc
Confidence            4577777777777766553210  0  0134467777776654    4566677788888888777631    111  12


Q ss_pred             EeccCcceEEEeeeccc-cCCCceEEEeCCCcceEEeeccccCCC---ccccCcccceeeEEeeEEcccchhHHHHhHHH
Q 043655          257 IFGTKLERLRVASCFDA-YCDKSWVKIDASKLKVLNWEYNAITAS---SSLENLASLHEASVGFILLHEDLTSAKLQSVS  332 (512)
Q Consensus       257 v~~~~L~~L~l~~c~~~-~~~~~~~~i~~p~L~~L~~~~~~~~~~---~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  332 (512)
                      -.++.+++|.+..|... +.....+.-.-||+..+....+++.+.   -.....|.+.-+.++-..+.+-       .-.
T Consensus       170 ~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idsw-------asv  242 (418)
T KOG2982|consen  170 DWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSW-------ASV  242 (418)
T ss_pred             ccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccH-------HHH
Confidence            23467888888887432 111222333457777776665543211   2233455555444443322111       123


Q ss_pred             HHhhcCCcccEeeecchhhhhhcccc--cccccccccccceEE
Q 043655          333 NFLSGLSHARSLTLESPCIEILSNRN--YFTNLHTFTNLKSLE  373 (512)
Q Consensus       333 ~~l~~l~~l~~L~l~~~~~~~~~~~~--~~~~~~~~~~L~~L~  373 (512)
                      .-+.+++.+..|.+....+-..-...  ..-....+++++.|+
T Consensus       243 D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  243 DALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             HHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            45777888888887765532211111  112344566666664

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=93.76  E-value=0.032  Score=52.41  Aligned_cols=36  Identities=28%  Similarity=0.431  Sum_probs=31.3

Q ss_pred             CCccCCCChHHHHHHHcc-----CCchhhHHHhhhcHhHHH
Q 043655           23 IDRISDLPDAILHHILFL-----LPIKSIAQTCTLSKRWRS   58 (512)
Q Consensus        23 ~D~is~LPdevl~~Ils~-----L~~~d~~rts~lSrrWr~   58 (512)
                      -+.|+.||||||..||..     |+.++..++|+|||.|+.
T Consensus       104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            455789999999999964     567999999999999985

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.72  E-value=0.019  Score=52.76  Aligned_cols=71  Identities=23%  Similarity=0.154  Sum_probs=46.8

Q ss_pred             HHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEeecc
Q 043655          333 NFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIIND  406 (512)
Q Consensus       333 ~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~~~  406 (512)
                      -+...+|++++|.++.+.++.+..   ....+.+.||..|.+..+....-..-=..+++-.|.|.+|+-....+
T Consensus        85 vl~e~~P~l~~l~ls~Nki~~lst---l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen   85 VLAEKAPNLKVLNLSGNKIKDLST---LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             ehhhhCCceeEEeecCCccccccc---cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence            345567999999999888765332   13556788899999987643211122246777788888887654443

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.50  E-value=0.074  Score=30.35  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=17.0

Q ss_pred             ccceEEeeeEEeeCccchhhhh
Q 043655          191 SLHTLSLSLVILFNQPCLLDLF  212 (512)
Q Consensus       191 ~L~~L~L~~~~~~~~~~l~~l~  212 (512)
                      +|++|+|..+.+.++..+..++
T Consensus         1 sLKtL~L~~v~f~~~~~l~~Ll   22 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLL   22 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhh
Confidence            5899999999997766665544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=93.48  E-value=0.0097  Score=65.76  Aligned_cols=80  Identities=24%  Similarity=0.232  Sum_probs=44.0

Q ss_pred             ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC-ccchhhhhcCCCCcccceeccccccc---cchhcc
Q 043655          161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN-QPCLLDLFTDSSFPHLKKLDLDACYG---LKQLKV  236 (512)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~l~~l~~~~~~p~L~~L~L~~~~~---l~~l~~  236 (512)
                      ..+.|++|+|++|.....+|..   .+.+-+|+.|+|++..+.. +.+++      .+..|.+|++.....   +..+..
T Consensus       569 ~m~~LrVLDLs~~~~l~~LP~~---I~~Li~LryL~L~~t~I~~LP~~l~------~Lk~L~~Lnl~~~~~l~~~~~i~~  639 (889)
T KOG4658|consen  569 SLPLLRVLDLSGNSSLSKLPSS---IGELVHLRYLDLSDTGISHLPSGLG------NLKKLIYLNLEVTGRLESIPGILL  639 (889)
T ss_pred             hCcceEEEECCCCCccCcCChH---HhhhhhhhcccccCCCccccchHHH------HHHhhheeccccccccccccchhh
Confidence            3566777777765444455532   2346667777776666653 22332      345666666665542   223334


Q ss_pred             cccccceeeeccc
Q 043655          237 GCRALEDLTLDNC  249 (512)
Q Consensus       237 ~cp~Le~L~l~~c  249 (512)
                      ..++|+.|.+..-
T Consensus       640 ~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  640 ELQSLRVLRLPRS  652 (889)
T ss_pred             hcccccEEEeecc
Confidence            4566666666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=93.22  E-value=0.014  Score=60.88  Aligned_cols=59  Identities=36%  Similarity=0.357  Sum_probs=36.5

Q ss_pred             CCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecch
Q 043655          284 ASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESP  349 (512)
Q Consensus       284 ~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~  349 (512)
                      +-.|+.|.+.++.++....+.++.+|+.+++++....+...       ..+|..+..|+.|.+.++
T Consensus       231 gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hse-------L~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  231 GCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSE-------LEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             hhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchh-------hhHHHHHHHHHHHhhcCC
Confidence            34478888888777666667888888888887654433221       233444445555555543

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=93.11  E-value=0.066  Score=52.67  Aligned_cols=37  Identities=27%  Similarity=0.378  Sum_probs=32.9

Q ss_pred             cCCCChHHHHHHHccCCc-hhhHHHhhhcHhHHHhhcc
Q 043655           26 ISDLPDAILHHILFLLPI-KSIAQTCTLSKRWRSLWCS   62 (512)
Q Consensus        26 is~LPdevl~~Ils~L~~-~d~~rts~lSrrWr~lw~~   62 (512)
                      .++||+|+|..|..+|+. -|.+|.+.|||.||..-..
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            578999999999999985 6999999999999986443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=92.93  E-value=0.0075  Score=51.61  Aligned_cols=49  Identities=22%  Similarity=0.375  Sum_probs=26.6

Q ss_pred             CCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC
Q 043655          152 YFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN  204 (512)
Q Consensus       152 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  204 (512)
                      ...+|-++.+.+.|+.|+++.+  .+...|.+  ++.||.|+.|+|.++.+..
T Consensus        68 ie~lp~~issl~klr~lnvgmn--rl~~lprg--fgs~p~levldltynnl~e  116 (264)
T KOG0617|consen   68 IEELPTSISSLPKLRILNVGMN--RLNILPRG--FGSFPALEVLDLTYNNLNE  116 (264)
T ss_pred             hhhcChhhhhchhhhheecchh--hhhcCccc--cCCCchhhhhhcccccccc
Confidence            3456666666666666666653  23333332  2456666666666555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.71  E-value=0.00077  Score=65.09  Aligned_cols=100  Identities=18%  Similarity=0.233  Sum_probs=62.7

Q ss_pred             CcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHH-HHHhhcCCcccEeeecchhhhhhcccccccccc
Q 043655          286 KLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSV-SNFLSGLSHARSLTLESPCIEILSNRNYFTNLH  364 (512)
Q Consensus       286 ~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~  364 (512)
                      +|+.|.+..+.+.....++++..|++++++...+         ..+ ...++.++++..|++.++.++...+     ...
T Consensus       207 ~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i---------~~lpae~~~~L~~l~vLDLRdNklke~Pd-----e~c  272 (565)
T KOG0472|consen  207 SLELLYLRRNKIRFLPEFPGCSLLKELHVGENQI---------EMLPAEHLKHLNSLLVLDLRDNKLKEVPD-----EIC  272 (565)
T ss_pred             hhHHHHhhhcccccCCCCCccHHHHHHHhcccHH---------HhhHHHHhcccccceeeeccccccccCch-----HHH
Confidence            4444445555554456678888888888774422         221 3357788999999998887665544     333


Q ss_pred             cccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655          365 TFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII  404 (512)
Q Consensus       365 ~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~  404 (512)
                      .+.+|.+|+++..    +..+++.=|.+. +|+.|.+++.
T Consensus       273 lLrsL~rLDlSNN----~is~Lp~sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  273 LLRSLERLDLSNN----DISSLPYSLGNL-HLKFLALEGN  307 (565)
T ss_pred             HhhhhhhhcccCC----ccccCCcccccc-eeeehhhcCC
Confidence            5667777777653    344555555566 6777766654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=92.58  E-value=0.17  Score=44.79  Aligned_cols=58  Identities=34%  Similarity=0.333  Sum_probs=39.9

Q ss_pred             ccCcccceEEeeeEEeeC-ccchhhhhcCCCCcccceecccccc-----ccchhcccccccceeeecccc
Q 043655          187 GGFRSLHTLSLSLVILFN-QPCLLDLFTDSSFPHLKKLDLDACY-----GLKQLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       187 ~~~~~L~~L~L~~~~~~~-~~~l~~l~~~~~~p~L~~L~L~~~~-----~l~~l~~~cp~Le~L~l~~c~  250 (512)
                      .++++|.+|.|.++++.. ++.+..     -+|+|+.|.|.+.+     .+..+ ..||+|++|.+.+..
T Consensus        61 p~l~rL~tLll~nNrIt~I~p~L~~-----~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNNRITRIDPDLDT-----FLPNLKTLILTNNSIQELGDLDPL-ASCPKLEYLTLLGNP  124 (233)
T ss_pred             CCccccceEEecCCcceeeccchhh-----hccccceEEecCcchhhhhhcchh-ccCCccceeeecCCc
Confidence            367888888888888876 334433     36888888888765     23333 468888888877754

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=92.06  E-value=0.14  Score=33.53  Aligned_cols=16  Identities=31%  Similarity=0.223  Sum_probs=9.0

Q ss_pred             cccccccceeeecccc
Q 043655          235 KVGCRALEDLTLDNCI  250 (512)
Q Consensus       235 ~~~cp~Le~L~l~~c~  250 (512)
                      +..+++|+.|++.++.
T Consensus        20 l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen   20 LSNLPNLETLNLSNNP   35 (44)
T ss_dssp             GTTCTTSSEEEETSSC
T ss_pred             HhCCCCCCEEEecCCC
Confidence            3455666666666553

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=91.92  E-value=0.031  Score=54.32  Aligned_cols=100  Identities=18%  Similarity=0.199  Sum_probs=57.7

Q ss_pred             CCceeEEEeccCCCCCCCcceeccCCccEEEEecccCcc-ccCCCccccccCcccceEEeeeEEeeC--ccchhhhhcCC
Q 043655          139 NVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGF-RLPPSSVVAGGFRSLHTLSLSLVILFN--QPCLLDLFTDS  215 (512)
Q Consensus       139 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~l~~l~~~~  215 (512)
                      +++-..++....+...+|..+  -++-+.++|..|  .+ .+|+..  +..+++|++|+|+++.+..  .+.|      .
T Consensus        45 ~~~g~~VdCr~~GL~eVP~~L--P~~tveirLdqN--~I~~iP~~a--F~~l~~LRrLdLS~N~Is~I~p~AF------~  112 (498)
T KOG4237|consen   45 DVEGGIVDCRGKGLTEVPANL--PPETVEIRLDQN--QISSIPPGA--FKTLHRLRRLDLSKNNISFIAPDAF------K  112 (498)
T ss_pred             CCCCceEEccCCCcccCcccC--CCcceEEEeccC--CcccCChhh--ccchhhhceecccccchhhcChHhh------h
Confidence            334455555554444555443  233456666663  33 345433  3578888999998887754  3334      3


Q ss_pred             CCcccceeccccccccchh----cccccccceeeecccc
Q 043655          216 SFPHLKKLDLDACYGLKQL----KVGCRALEDLTLDNCI  250 (512)
Q Consensus       216 ~~p~L~~L~L~~~~~l~~l----~~~cp~Le~L~l~~c~  250 (512)
                      +.++|-+|.+++...|+.+    +.+...|+.|.+.-|.
T Consensus       113 GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~  151 (498)
T KOG4237|consen  113 GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH  151 (498)
T ss_pred             hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence            6788888888885544443    3344556666665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=91.64  E-value=0.27  Score=49.18  Aligned_cols=115  Identities=18%  Similarity=0.208  Sum_probs=65.6

Q ss_pred             cCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccchhccc-ccccceeeeccccCccceeEeccCcceEE
Q 043655          188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVG-CRALEDLTLDNCIQLCGLDIFGTKLERLR  266 (512)
Q Consensus       188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l~~~-cp~Le~L~l~~c~~l~~~~v~~~~L~~L~  266 (512)
                      .+++++.|++++|.+..-..        --++|+.|.+.+|..+..+-.. .++|+.|.+.+|..+..+   .++|+.|.
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~--------LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sL---P~sLe~L~  118 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV--------LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGL---PESVRSLE  118 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC--------CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccc---ccccceEE
Confidence            36888999998885543211        1236888888888766554432 357888888888655432   25688887


Q ss_pred             EeeeccccCCCceEEEeCCCcceEEeeccccCCCcccc-Cc-ccceeeEEeeEE
Q 043655          267 VASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLE-NL-ASLHEASVGFIL  318 (512)
Q Consensus       267 l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~-~~-~~L~~l~l~~~~  318 (512)
                      +.+...     ..+..--++|+.|.+.+........+. .+ ++|+.+++..|.
T Consensus       119 L~~n~~-----~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~  167 (426)
T PRK15386        119 IKGSAT-----DSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS  167 (426)
T ss_pred             eCCCCC-----cccccCcchHhheeccccccccccccccccCCcccEEEecCCC
Confidence            753211     112223356777776542211111111 11 467777776543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.53  E-value=0.029  Score=49.51  Aligned_cols=53  Identities=26%  Similarity=0.416  Sum_probs=28.9

Q ss_pred             CCcccceecccccc-----ccchhcccccccceeeeccccCccceeEec----cCcceEEEe
Q 043655          216 SFPHLKKLDLDACY-----GLKQLKVGCRALEDLTLDNCIQLCGLDIFG----TKLERLRVA  268 (512)
Q Consensus       216 ~~p~L~~L~L~~~~-----~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~----~~L~~L~l~  268 (512)
                      +++.|+.|.+.+|+     ++..+-...|+|++|+|.+|..+++-.+..    ++||.|.|.
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            34445555555544     344454456777777777777665544432    445555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=91.16  E-value=0.11  Score=45.91  Aligned_cols=109  Identities=17%  Similarity=0.198  Sum_probs=65.5

Q ss_pred             CcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccccc
Q 043655          286 KLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHT  365 (512)
Q Consensus       286 ~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~  365 (512)
                      ....++++++.+.....+..+++|..+.++...+..-.        ..+..-+++++.|.++.+.++.+.+-.   ....
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~--------p~L~~~~p~l~~L~LtnNsi~~l~dl~---pLa~  111 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID--------PDLDTFLPNLKTLILTNNSIQELGDLD---PLAS  111 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeec--------cchhhhccccceEEecCcchhhhhhcc---hhcc
Confidence            34445555544433344556667777777655432111        123445688999999998887776654   4456


Q ss_pred             ccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEeec
Q 043655          366 FTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIIN  405 (512)
Q Consensus       366 ~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~~  405 (512)
                      ||.|++|.+-......-..-=...+...|+|+.|+++...
T Consensus       112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             CCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            7788888876542211111123456788999999987654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=90.67  E-value=0.12  Score=33.87  Aligned_cols=15  Identities=33%  Similarity=0.343  Sum_probs=7.7

Q ss_pred             cCcccceEEeeeEEe
Q 043655          188 GFRSLHTLSLSLVIL  202 (512)
Q Consensus       188 ~~~~L~~L~L~~~~~  202 (512)
                      .+++|+.|+++++.+
T Consensus        22 ~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen   22 NLPNLETLNLSNNPI   36 (44)
T ss_dssp             TCTTSSEEEETSSCC
T ss_pred             CCCCCCEEEecCCCC
Confidence            455555555555444

...

>PF13013 F-box-like_2: F-box-like domain

Probab=90.42  E-value=0.34  Score=38.69  Aligned_cols=39  Identities=21%  Similarity=0.261  Sum_probs=31.4

Q ss_pred             ccCCCChHHHHHHHccCCchhhHHHhhhcH--hH-HHh-hccC
Q 043655           25 RISDLPDAILHHILFLLPIKSIAQTCTLSK--RW-RSL-WCSF   63 (512)
Q Consensus        25 ~is~LPdevl~~Ils~L~~~d~~rts~lSr--rW-r~l-w~~~   63 (512)
                      .+.+||+||+..|+.+-...+....+..++  || ++. |..+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~~~~~L   63 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDHIWYLL   63 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            478999999999999999999988888887  44 443 5443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.37  E-value=0.059  Score=49.53  Aligned_cols=34  Identities=35%  Similarity=0.430  Sum_probs=18.2

Q ss_pred             Ccccceeccccc-----cccchhcccccccceeeecccc
Q 043655          217 FPHLKKLDLDAC-----YGLKQLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       217 ~p~L~~L~L~~~-----~~l~~l~~~cp~Le~L~l~~c~  250 (512)
                      +|+|++|.+...     .++..+...||+|..|++++..
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk  102 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK  102 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence            445555555433     1445555556666666666653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=89.89  E-value=0.018  Score=49.31  Aligned_cols=107  Identities=20%  Similarity=0.265  Sum_probs=51.8

Q ss_pred             eCCCcceEEeeccccC-CCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccc
Q 043655          283 DASKLKVLNWEYNAIT-ASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFT  361 (512)
Q Consensus       283 ~~p~L~~L~~~~~~~~-~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~  361 (512)
                      +.|+|+.|.+.-+... -...++.+|.|+-+++.+....+......+.       .+..++.|.++.+.++++..     
T Consensus        77 sl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff-------~m~tlralyl~dndfe~lp~-----  144 (264)
T KOG0617|consen   77 SLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFF-------YMTTLRALYLGDNDFEILPP-----  144 (264)
T ss_pred             hchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchh-------HHHHHHHHHhcCCCcccCCh-----
Confidence            4566666665543321 1133556666666666655433221100000       01113334444444333221     


Q ss_pred             ccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEeec
Q 043655          362 NLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIIN  405 (512)
Q Consensus       362 ~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~~  405 (512)
                      ....+.+|+.|.+.    +.+...++.=+...+.|+.|+|++..
T Consensus       145 dvg~lt~lqil~lr----dndll~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  145 DVGKLTNLQILSLR----DNDLLSLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhhhhcceeEEeec----cCchhhCcHHHHHHHHHHHHhcccce
Confidence            11233444444443    33566677777788888888888754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.49  E-value=0.073  Score=51.95  Aligned_cols=38  Identities=21%  Similarity=0.362  Sum_probs=31.0

Q ss_pred             cccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655          363 LHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII  404 (512)
Q Consensus       363 ~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~  404 (512)
                      +..+.+|+.|+|..    .+...++.++++|++|+.|++.+.
T Consensus       501 l~nm~nL~tLDL~n----Ndlq~IPp~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  501 LKNMRNLTTLDLQN----NDLQQIPPILGNMTNLRHLELDGN  538 (565)
T ss_pred             hhhhhhcceeccCC----CchhhCChhhccccceeEEEecCC
Confidence            44567888887754    477899999999999999999864

>PLN03150 hypothetical protein; Provisional

Probab=87.80  E-value=0.42  Score=51.42  Aligned_cols=79  Identities=18%  Similarity=0.136  Sum_probs=37.7

Q ss_pred             ccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc---ccchhccccccc
Q 043655          165 LRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY---GLKQLKVGCRAL  241 (512)
Q Consensus       165 L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~---~l~~l~~~cp~L  241 (512)
                      ++.|+|.++.....+|..   ...+++|+.|+|+++.+.+.  +...+  ..+++|+.|+|.++.   .+...+..+++|
T Consensus       420 v~~L~L~~n~L~g~ip~~---i~~L~~L~~L~Ls~N~l~g~--iP~~~--~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L  492 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPND---ISKLRHLQSINLSGNSIRGN--IPPSL--GSITSLEVLDLSYNSFNGSIPESLGQLTSL  492 (623)
T ss_pred             EEEEECCCCCccccCCHH---HhCCCCCCEEECCCCcccCc--CChHH--hCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence            555666653222222221   23466667777766665431  11111  245666666665553   222333455555


Q ss_pred             ceeeecccc
Q 043655          242 EDLTLDNCI  250 (512)
Q Consensus       242 e~L~l~~c~  250 (512)
                      +.|+|.++.
T Consensus       493 ~~L~Ls~N~  501 (623)
T PLN03150        493 RILNLNGNS  501 (623)
T ss_pred             CEEECcCCc
Confidence            555555543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=86.34  E-value=0.37  Score=27.36  Aligned_cols=18  Identities=28%  Similarity=0.695  Sum_probs=13.5

Q ss_pred             ccccceeeeccccCccce
Q 043655          238 CRALEDLTLDNCIQLCGL  255 (512)
Q Consensus       238 cp~Le~L~l~~c~~l~~~  255 (512)
                      ||+|+.|+|.+|..+++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            678888888888776654

>PLN03150 hypothetical protein; Provisional

Probab=86.07  E-value=0.63  Score=50.09  Aligned_cols=69  Identities=22%  Similarity=0.305  Sum_probs=50.0

Q ss_pred             CCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc
Q 043655          154 NLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY  229 (512)
Q Consensus       154 ~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~  229 (512)
                      .+|..+..+++|+.|+|++|.....+|..   ...+++|+.|+|+++.+.+.  +...+  ..+++|+.|+|.++.
T Consensus       433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~---~~~l~~L~~LdLs~N~lsg~--iP~~l--~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        433 FIPNDISKLRHLQSINLSGNSIRGNIPPS---LGSITSLEVLDLSYNSFNGS--IPESL--GQLTSLRILNLNGNS  501 (623)
T ss_pred             cCCHHHhCCCCCCEEECCCCcccCcCChH---HhCCCCCCEEECCCCCCCCC--CchHH--hcCCCCCEEECcCCc
Confidence            45666667899999999986433344432   35799999999999988752  11112  378999999999875

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=85.20  E-value=3.5  Score=38.57  Aligned_cols=176  Identities=15%  Similarity=0.083  Sum_probs=97.9

Q ss_pred             CCcceEEeeccccCCC------ccccCcccceeeEEeeEEc--ccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcc
Q 043655          285 SKLKVLNWEYNAITAS------SSLENLASLHEASVGFILL--HEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSN  356 (512)
Q Consensus       285 p~L~~L~~~~~~~~~~------~~l~~~~~L~~l~l~~~~~--~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~  356 (512)
                      ..+..++++|+.+...      ..+.+..+|+.++++....  ..+..+.....+...+-+||+++..+++.+.+..-..
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            4566677777765322      2233455666555542211  1222333344566677789999999999876432222


Q ss_pred             cccccccccccccceEEEEeeccCCcH-HHHH---------HHHhhCCCCcEEEEEeecccchhhhcccccccCccCccc
Q 043655          357 RNYFTNLHTFTNLKSLELHTGFNKHNV-QGLA---------CLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEE  426 (512)
Q Consensus       357 ~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~l~---------~~L~~cp~Le~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  426 (512)
                      ..+-.....-.+|+||.+.++-.+.-. .-+.         +=..+-|.|+.....-.+ ...               -+
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-len---------------gs  173 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LEN---------------GS  173 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hcc---------------Cc
Confidence            211124456679999999875332111 1121         223456778777664211 110               13


Q ss_pred             hhhhhccccCchhhhcCccEEEEeeeccchhH--HHHHHHHHhcCccccceEEEecc
Q 043655          427 EQYWQSQSQTLKPFLNNLNVVEIHGFLECENE--VSLAKFLLKHGKALQEMTLCTGH  481 (512)
Q Consensus       427 ~~~w~~~~~~~~~~~~~L~~v~i~~~~g~~~e--~~l~~~ll~~a~~L~~m~i~~~~  481 (512)
                      ...|..-   .+. +..|++|+|. +.|...+  -.++-+=+..+..|+.+.+....
T Consensus       174 ~~~~a~~---l~s-h~~lk~vki~-qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt  225 (388)
T COG5238         174 KELSAAL---LES-HENLKEVKIQ-QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT  225 (388)
T ss_pred             HHHHHHH---HHh-hcCceeEEee-ecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence            4456532   121 4579999998 4454322  45666667889999999988753

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=84.62  E-value=0.31  Score=49.36  Aligned_cols=37  Identities=32%  Similarity=0.467  Sum_probs=21.4

Q ss_pred             HhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEe
Q 043655          334 FLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHT  376 (512)
Q Consensus       334 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  376 (512)
                      .+..+++++.|+++...+..+.      ....+.++++|++..
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~------~~~~~~~l~~L~~s~  286 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSIS------SLGSLTNLRELDLSG  286 (394)
T ss_pred             hhccccccceeccccccccccc------cccccCccCEEeccC
Confidence            4555666777777666543332      133556677776654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.32  E-value=0.043  Score=50.84  Aligned_cols=102  Identities=21%  Similarity=0.201  Sum_probs=47.8

Q ss_pred             CcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccccc
Q 043655          286 KLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHT  365 (512)
Q Consensus       286 ~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~  365 (512)
                      +.+.|++.|+.+.+......||.|+-+.++...+.+          ..-+..|.+|+.|.|.-+.++.+.+-.   -+..
T Consensus        20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIss----------L~pl~rCtrLkElYLRkN~I~sldEL~---YLkn   86 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISS----------LAPLQRCTRLKELYLRKNCIESLDELE---YLKN   86 (388)
T ss_pred             HhhhhcccCCCccHHHHHHhcccceeEEeecccccc----------chhHHHHHHHHHHHHHhcccccHHHHH---HHhc
Confidence            344555555555444445556666666655443221          112445555565555555544333221   1224


Q ss_pred             ccccceEEEEe--eccCCcHHHHHHHHhhCCCCcEEE
Q 043655          366 FTNLKSLELHT--GFNKHNVQGLACLFRSSPSIHTLI  400 (512)
Q Consensus       366 ~~~L~~L~L~~--~~~~~~~~~l~~~L~~cp~Le~L~  400 (512)
                      +++|+.|=|..  |+......-=...|+..|||++|+
T Consensus        87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            44555555542  112222222344566666666665

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.30  E-value=0.12  Score=45.85  Aligned_cols=67  Identities=28%  Similarity=0.391  Sum_probs=47.6

Q ss_pred             ccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccch----hcccccccceeeeccccCccce
Q 043655          187 GGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQ----LKVGCRALEDLTLDNCIQLCGL  255 (512)
Q Consensus       187 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~----l~~~cp~Le~L~l~~c~~l~~~  255 (512)
                      .+++.++.|++.+|...++.++..+-.  -.|+|+.|+|.+|..|..    .+...++|+.|.|.+-..+...
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~~  192 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVANL  192 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhch
Confidence            457778888888888888777776643  678899999988874432    2245688888888877654433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=81.63  E-value=0.89  Score=45.96  Aligned_cols=166  Identities=23%  Similarity=0.232  Sum_probs=87.4

Q ss_pred             cCCccEEEEecccCccccCCCccccccC-cccceEEeeeEEeeCc-cchhhhhcCCCCcccceecccccc--ccchhccc
Q 043655          162 SDSLRVFKLRSRYRGFRLPPSSVVAGGF-RSLHTLSLSLVILFNQ-PCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVG  237 (512)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~-~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~  237 (512)
                      .+.++.|.+.++. ...+++..   .-+ ++|+.|+++.+.+..- ..+      ..+|+|+.|++.++.  .+......
T Consensus       115 ~~~l~~L~l~~n~-i~~i~~~~---~~~~~nL~~L~l~~N~i~~l~~~~------~~l~~L~~L~l~~N~l~~l~~~~~~  184 (394)
T COG4886         115 LTNLTSLDLDNNN-ITDIPPLI---GLLKSNLKELDLSDNKIESLPSPL------RNLPNLKNLDLSFNDLSDLPKLLSN  184 (394)
T ss_pred             ccceeEEecCCcc-cccCcccc---ccchhhcccccccccchhhhhhhh------hccccccccccCCchhhhhhhhhhh
Confidence            4567788877742 12344321   123 3788888888777653 122      368888888888876  44444447


Q ss_pred             ccccceeeeccccCccceeEe--cc-CcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCC-CccccCcccceeeE
Q 043655          238 CRALEDLTLDNCIQLCGLDIF--GT-KLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITA-SSSLENLASLHEAS  313 (512)
Q Consensus       238 cp~Le~L~l~~c~~l~~~~v~--~~-~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~-~~~l~~~~~L~~l~  313 (512)
                      .+.|+.|.+.+.. +..+...  .+ .|++|.+..-...  ......-...++..+.+.+..... ...++.++.++.++
T Consensus       185 ~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~--~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~  261 (394)
T COG4886         185 LSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSII--ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLD  261 (394)
T ss_pred             hhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcce--ecchhhhhcccccccccCCceeeeccchhccccccceec
Confidence            7888888888875 2333221  22 3666666553100  000001123344444433333222 23345566666666


Q ss_pred             EeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchh
Q 043655          314 VGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPC  350 (512)
Q Consensus       314 l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~  350 (512)
                      +.......         +.. +..+.+++.|+++...
T Consensus       262 ~s~n~i~~---------i~~-~~~~~~l~~L~~s~n~  288 (394)
T COG4886         262 LSNNQISS---------ISS-LGSLTNLRELDLSGNS  288 (394)
T ss_pred             cccccccc---------ccc-ccccCccCEEeccCcc
Confidence            65443211         111 5556667777776543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=80.77  E-value=0.16  Score=53.40  Aligned_cols=102  Identities=20%  Similarity=0.101  Sum_probs=55.3

Q ss_pred             cCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCcccc--CcccceeeEEeeEEcccchhHHHHhHHHHHhhc
Q 043655          260 TKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLE--NLASLHEASVGFILLHEDLTSAKLQSVSNFLSG  337 (512)
Q Consensus       260 ~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~  337 (512)
                      |.|++|+++......   .....++|.|+.|+++.+.......++  ++ .|+.+.+......         . ..-+..
T Consensus       187 ~ale~LnLshNk~~~---v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~---------t-L~gie~  252 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTK---VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALT---------T-LRGIEN  252 (1096)
T ss_pred             HHhhhhccchhhhhh---hHHHHhcccccccccccchhccccccchhhh-hheeeeecccHHH---------h-hhhHHh
Confidence            566667666532211   112236788888888776543332222  23 3666666533211         1 112456


Q ss_pred             CCcccEeeecchhhhhhcccccccccccccccceEEEEeec
Q 043655          338 LSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGF  378 (512)
Q Consensus       338 l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  378 (512)
                      +.+|..|+++++.+..-..-   ..+-.+..|+.|.|..++
T Consensus       253 LksL~~LDlsyNll~~hseL---~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSEL---EPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhhhhccchhHhhhhcchhh---hHHHHHHHHHHHhhcCCc
Confidence            67788889988775443321   122345678888887643

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=80.25  E-value=0.78  Score=48.08  Aligned_cols=40  Identities=25%  Similarity=0.370  Sum_probs=36.6

Q ss_pred             CCCCCccCCCChHHHHHHHccCCchhhHHHhhhcHhHHHh
Q 043655           20 DNGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSL   59 (512)
Q Consensus        20 ~~~~D~is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~l   59 (512)
                      ....|-|+.||-|+..+||++|+.++.+.++.+|+.|+.+
T Consensus       102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            3457889999999999999999999999999999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	512
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 5e-09
 Identities = 77/542 (14%), Positives = 145/542 (26%), Gaps = 165/542 (30%)

Query: 39  FLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEM 98
           FL+    I            ++    D  +N     A    KYN S    R +      +
Sbjct: 93  FLM--SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA----KYNVS----RLQ----PYL 138

Query: 99  DLISQVLSIRDKHSYIRVLRFRAH--LSF--SCLNGLIRRAIRHNVEELDIEVATDDYFN 154
            L   +L +R     + +        L    + +   +  + +    ++D ++    + N
Sbjct: 139 KLRQALLELRP-AKNVLI-----DGVLGSGKTWVALDVCLSYKV-QCKMDFKIF---WLN 188

Query: 155 LPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTD 214
           L  C   S    +  L+          +S      RS H+ ++ L I   Q  L  L   
Sbjct: 189 LKNC--NSPETVLEMLQKLLYQIDPNWTS------RSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 215 SSFPH-LKKLDLDACYG--LKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCF 271
             + + L  L  +           + C+ L  LT              T     R     
Sbjct: 241 KPYENCLLVLL-NVQNAKAWNAFNLSCKIL--LT--------------T-----RFKQVT 278

Query: 272 DAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASL---------HEASVGFILLHED 322
           D       +    +    L+     +T       L             E           
Sbjct: 279 DF------LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-S 331

Query: 323 LTSAKLQSVSNFLSGLSHARSLTLE---SPCIEILS---NRNYFTNLHTF---TNL--KS 371
           + +  ++          H     L       + +L     R  F  L  F    ++    
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 372 LE-LHTGFNKHNVQGLACLF-----------RSSPSIHTLIL--------------KIIN 405
           L  +     K +V  +                S+ SI ++ L               I++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 406 DYKIQRRQWNRDLWDMYTSEEEQYW------------QSQSQTLKP-------FL----- 441
            Y I +     D  D+     +QY+              +  TL         FL     
Sbjct: 452 HYNIPK---TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 442 -------------NNLNVVEIHGFLECENE-------VSLAKFLLKHGKALQEMTLCTGH 481
                        N L  ++ +    C+N+        ++  FL K  + L    +C+ +
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL----ICSKY 564

Query: 482 CN 483
            +
Sbjct: 565 TD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 3e-07
 Identities = 53/335 (15%), Positives = 105/335 (31%), Gaps = 94/335 (28%)

Query: 47  AQTCTLSKRWRSLWCSFPDL--DFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQV 104
            +  +L  ++  L C   DL  +  T NP  +S                      +I++ 
Sbjct: 301 DEVKSLLLKY--LDCRPQDLPREVLTTNPRRLS----------------------IIAE- 335

Query: 105 LSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNL---PRCV-I 160
            SIRD  +      ++ H++   L       I  ++  L+       +  L   P    I
Sbjct: 336 -SIRDGLA--TWDNWK-HVNCDKLT----TIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPC-----LLDLFTDS 215
            +  L +                VV      LH  SL    +  QP      +  ++ + 
Sbjct: 388 PTILLSLIWFDVIKSD----VMVVVN----KLHKYSL----VEKQPKESTISIPSIYLEL 435

Query: 216 SFP-------HLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGLD--IF---G---T 260
                     H   +D    Y + +        +DL          LD   +   G    
Sbjct: 436 KVKLENEYALHRSIVD---HYNIPK----TFDSDDLIPPY------LDQYFYSHIGHHLK 482

Query: 261 KLERLRVASCF-DAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILL 319
            +E     + F   + D  +++    K++    +  A  AS S+ N     +    +I  
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLE---QKIR---HDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 320 HEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEIL 354
           ++      + ++ +FL       +L + S   ++L
Sbjct: 537 NDPKYERLVNAILDFL--PKIEENL-ICSKYTDLL 568

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 55/395 (13%), Positives = 108/395 (27%), Gaps = 151/395 (38%)

Query: 140 VEELDIEVATDDYFNLPRCVITSDSLR-VFKLRSR----YRGF---RLPPSSVVAGGFRS 191
           V+  D +   D    +P+ +++ + +  +   +       R F         +V      
Sbjct: 30  VDNFDCKDVQD----MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85

Query: 192 LHT-----LSLSLVILFNQPCLLD---------LFTDSS-FP--HLKKLDLDACYGLKQL 234
           +       L   +     QP ++          L+ D+  F   ++ +L         +L
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-----YLKL 140

Query: 235 KVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDA-SKLKVLNWE 293
           +   +AL +L     + + G+   G                 K+WV +D     KV    
Sbjct: 141 R---QALLELRPAKNVLIDGV--LG---------------SGKTWVALDVCLSYKVQCKM 180

Query: 294 YNAI---------TASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSL 344
              I         +  + LE L  L                   Q   N+ S   H+ ++
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLL-----------------YQIDPNWTSRSDHSSNI 223

Query: 345 TLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII 404
            L    I  +              L+ L     +         CL         L+L   
Sbjct: 224 KLR---IHSIQAE-----------LRRLLKSKPYEN-------CL---------LVL--- 250

Query: 405 NDYKIQRRQWNRDLWDMYTSEEEQYWQS---QSQTL--------KPFLNNLNVVEI---- 449
                       ++ +       + W +     + L          FL+      I    
Sbjct: 251 -----------LNVQN------AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 450 --HGFLECENEVSLAKFLLKHGKAL-QEMTLCTGH 481
                   E +  L K+L    + L +E+   T +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREV--LTTN 326

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 63/436 (14%), Positives = 122/436 (27%), Gaps = 79/436 (18%)

Query: 24  DRISDLPDAILHHILFLLPI----KSIAQTCTLSKRWRSLW-CSFPDLDFNTINPLAISS 78
                 P+ +L H+   + +     S++  C   K W  +       +       +    
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVC---KSWYEIERWCRRKVFIGNCYAV---- 56

Query: 79  GKYNTSSGAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRH 138
                S      RF  ++ ++L        D       L       +         +   
Sbjct: 57  -----SPATVIRRFPKVRSVEL-KGKPHFAD-----FNLVPDGWGGYVYPWIEAMSSSYT 105

Query: 139 NVEELDIEVATDDYFNLPRCVITSDSLRVF-----KLR----SRYRGFRLPPSSVVAGGF 189
            +EE+           L R V+T D L +        +    S   GF     + +A   
Sbjct: 106 WLEEI----------RLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC 155

Query: 190 RSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY------GLKQLKVGCRALED 243
           R+L  L L    + +           ++  L  L++           L++L   C  L+ 
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215

Query: 244 LTLDNCIQLCGLDIFG---TKLERLRVASCFDAYCDKSWVKIDA-----SKLKVLNWEYN 295
           L L+  + L  L        +LE L             +  +        +L+ L+  ++
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275

Query: 296 AITAS-----SSLENLASLH--------EASVGFILLHEDLTSAKL------QSVSNFLS 336
           A+ A      S    L +L+           V  +     L    +        +    S
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS 335

Query: 337 GLSHARSLTLESPCIEILSNRNYFTN---LHTFTNLKSLE-LHTGFNKHNVQGLACLFRS 392
                R L +      ++      T    +        LE +     +     L  + R+
Sbjct: 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395

Query: 393 SPSIHTLILKIINDYK 408
            P++    L II    
Sbjct: 396 RPNMTRFRLCIIEPKA 411

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 40/263 (15%), Positives = 74/263 (28%), Gaps = 32/263 (12%)

Query: 26  ISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDLDFNTINPLAISSGKYNTSS 85
              LPD +L  I   L +  + +   + KRW  L  S   L                   
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL-ASDESLWQTLDLTGKNLHPDVTGRL 67

Query: 86  GAKRPRFISLKEMDLISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDI 145
            ++           +   +           +    + +  S L+G++ +     ++ L +
Sbjct: 68  LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC--SKLQNLSL 125

Query: 146 EVATDDYFNLPRCVITSDSLRVF----KLR----SRYRGFRLPPSSVVAGGFRSLHTLSL 197
           E             ++   +        L     S   GF       +      L  L+L
Sbjct: 126 E----------GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175

Query: 198 SLVILFNQPCLLDLFTDSSFPHLKKLDLDACY------GLKQLKVGCRALEDLTLDNCIQ 251
           S    F +  +       S   + +L+L           L  L   C  L  L L + + 
Sbjct: 176 SWCFDFTEKHVQVAVAHVS-ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234

Query: 252 L--CGLDIFG--TKLERLRVASC 270
           L       F     L+ L ++ C
Sbjct: 235 LKNDCFQEFFQLNYLQHLSLSRC 257

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 42/273 (15%), Positives = 82/273 (30%), Gaps = 59/273 (21%)

Query: 210 DLFTDSSFPHLKKLDL-----------DACYGLKQLKVGCRALEDLT-LDNCIQLCGLDI 257
            +F D +F    K +L           +    + Q+      ++ +  +     +  L +
Sbjct: 13  QIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL 72

Query: 258 FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFI 317
            G KL  ++  +                 L  L  + N I   SSL++L  L        
Sbjct: 73  NGNKLTDIKPLTNL-------------KNLGWLFLDENKIKDLSSLKDLKKLKS------ 113

Query: 318 LLHEDLTSAKLQSVSNFLSGLSHARSLTLES------------PCIEILS-NRNYFTNLH 364
           L    L    +  ++  L  L    SL L +              ++ LS   N  +++ 
Sbjct: 114 L---SLEHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV 169

Query: 365 TFTNLKSL-ELHTGFNK-HNVQGLACLFRSSPSIHTLIL---KIIND--YKIQRRQWNRD 417
               L  L  L+   N   +++ LA L     ++  L L   + +N              
Sbjct: 170 PLAGLTKLQNLYLSKNHISDLRALAGL----KNLDVLELFSQECLNKPINHQSNLVVPNT 225

Query: 418 LWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIH 450
           + +   S       S     +      ++ E  
Sbjct: 226 VKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 258

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 42/278 (15%), Positives = 78/278 (28%), Gaps = 47/278 (16%)

Query: 188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLT-L 246
              ++  L L+     N+  L D+   ++  +L  L LD              ++DL+ L
Sbjct: 63  YLPNVTKLFLN----GNK--LTDIKPLTNLKNLGWLFLDEN-----------KIKDLSSL 105

Query: 247 DNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENL 306
            +  +L  L +    +  +                    +L+ L    N IT  + L  L
Sbjct: 106 KDLKKLKSLSLEHNGISDINGLVHL-------------PQLESLYLGNNKITDITVLSRL 152

Query: 307 ASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTF 366
             L        L    L   ++  +   L+GL+  ++L L    I  L        L   
Sbjct: 153 TKLDT------L---SLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR------ALAGL 196

Query: 367 TNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEE 426
            NL  LEL +    +             ++      ++    I            +   E
Sbjct: 197 KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPE 256

Query: 427 EQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKF 464
                S        +            +   EV    +
Sbjct: 257 FTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 45.3 bits (106), Expect = 2e-05
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 22 GIDRISDLPDAILHHILFLLPIKSIAQTCTL-SKRWRSLWCSFPDLDFN 69
           ++ +++LP+ +L  +L  LP   + Q C L   RW+ L      L   
Sbjct: 47 AVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL-VDGAPLWLL 94

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 41/178 (23%)

Query: 210 DLFTDSSFPHLKKLDL-----------DACYGLKQLKVGCRALEDLT-LDNCIQLCGLDI 257
            +F+D +F    K +L           +    + Q+      ++ +  +     +  L +
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL 75

Query: 258 FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFI 317
            G KL  ++  +             +   L  L  + N +   SSL++L  L        
Sbjct: 76  NGNKLTDIKPLA-------------NLKNLGWLFLDENKVKDLSSLKDLKKLKSL----- 117

Query: 318 LLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELH 375
                L    +  ++  L  L    SL L +  I  ++       L   T L +L L 
Sbjct: 118 ----SLEHNGISDING-LVHLPQLESLYLGNNKITDITV------LSRLTKLDTLSLE 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 44/193 (22%)

Query: 210 DLFTDSSFPHLKKLDLDACY-----------GLKQLKVGCRALEDLT-LDNCIQLCGLDI 257
            +F D +  +  K+                 G+  L      +  +  +     L GL++
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLEL 70

Query: 258 FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFI 317
              ++  L                   +K+  L    N +   S++  L S+        
Sbjct: 71  KDNQITDLAPLKNL-------------TKITELELSGNPLKNVSAIAGLQSIKTL----- 112

Query: 318 LLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTG 377
               DLTS ++  V+  L+GLS+ + L L+   I  +S       L   TNL+ L +  G
Sbjct: 113 ----DLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS------PLAGLTNLQYLSI--G 159

Query: 378 FNK-HNVQGLACL 389
             +  ++  LA L
Sbjct: 160 NAQVSDLTPLANL 172

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 51/410 (12%), Positives = 113/410 (27%), Gaps = 85/410 (20%)

Query: 15  ENDQCDNGIDRISDLPDAILHHILFLLP----IKSIAQTCTLSKRWRSLWCSFPDLDFNT 70
           E+              D ++  ++  +       S +  C   +RW         +D  T
Sbjct: 2   EDPDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVC---RRWFK-------IDSET 51

Query: 71  INPLAISSGKYNTSSGAKRPRFISLKEMDL----ISQVLSIRDKHSYIRVLRFRAHLSFS 126
              + ++   Y  +      RF +L+ + L     + + ++  ++    V  +   +S +
Sbjct: 52  REHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNN 110

Query: 127 CLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVA 186
                        ++ +          +  R +++   L                  +  
Sbjct: 111 L----------RQLKSV----------HFRRMIVSDLDLD----------------RLAK 134

Query: 187 GGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY-------GLKQLKVGCR 239
                L TL L     F    LL +   +    +K L ++           L +L     
Sbjct: 135 ARADDLETLKLDKCSGFTTDGLLSIV--THCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192

Query: 240 ALEDLTLDNCIQLCGLDIFG--------TKLERLRVASCFDAYCDKSWVKIDASKLKVLN 291
           +LE L      +   +              L  ++V        +       A+ L+   
Sbjct: 193 SLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFEIL--ELVGFFKAAANLEEFC 249

Query: 292 WEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCI 351
                       + +  +        L    L+      +       +  R L L     
Sbjct: 250 GGSLNEDIGMPEKYMNLVFPRK----LCRLGLSYMGPNEMPILFPFAAQIRKLDL-LYA- 303

Query: 352 EILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLIL 401
            +L   ++ T +    NL+ LE     N    +GL  L +    +  L +
Sbjct: 304 -LLETEDHCTLIQKCPNLEVLETR---NVIGDRGLEVLAQYCKQLKRLRI 349

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 49/272 (18%), Positives = 88/272 (32%), Gaps = 47/272 (17%)

Query: 153 FNLPRCVITSD--------SLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN 204
             +    I           +L  F   S      +P   +     R L  L LS +    
Sbjct: 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284

Query: 205 QPCLLDLFTDSSFPHLKKLDLDACY----GLKQLKVGCRALEDLTLDNCIQLCGLDIFG- 259
            P L           ++KLDL            L   C  LE L   N I   GL++   
Sbjct: 285 MPILF-----PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339

Query: 260 --TKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLA----SLHEAS 313
              +L+RLR+                    + +  E   ++    L  LA     L    
Sbjct: 340 YCKQLKRLRIERGA--------------DEQGMEDEEGLVS-QRGLIALAQGCQELEY-- 382

Query: 314 VGFILLH-EDLTSAKLQSVSNFLSGLSHARSLTLESPC--IEILSNRNYFTNLHTFTNLK 370
              + ++  D+T+  L+S+  +L  L   R + L+      ++  +    + L     L+
Sbjct: 383 ---MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439

Query: 371 SLELHTGFNKHNVQGLACLFRSSPSIHTLILK 402
               +         GL+ + + SP++  ++L 
Sbjct: 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 40/198 (20%), Positives = 68/198 (34%), Gaps = 49/198 (24%)

Query: 187 GGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDA-----------CYGLKQLK 235
               +L  L+L      NQ  + D+    +  +L +L+L +              L+QL 
Sbjct: 109 ANLTNLTGLTLF----NNQ--ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 162

Query: 236 VGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYN 295
            G +  +   L N   L  LDI   K+  + V +               + L+ L    N
Sbjct: 163 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL-------------TNLESLIATNN 209

Query: 296 AITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILS 355
            I+  + L  L +L E      L    L   +L+ +    + L++   L L         
Sbjct: 210 QISDITPLGILTNLDE------L---SLNGNQLKDIGTL-ASLTNLTDLDL--------- 250

Query: 356 NRNYFTNLHTFTNLKSLE 373
             N  +NL   + L  L 
Sbjct: 251 ANNQISNLAPLSGLTKLT 268

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 36/242 (14%), Positives = 71/242 (29%), Gaps = 50/242 (20%)

Query: 182 SSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF---PHLKKLDLDACYGLKQLKVGC 238
             +     ++L  L +      N+   +     S F     +  ++L          +  
Sbjct: 113 KELPEKMPKTLQELRVH----ENE---ITKVRKSVFNGLNQMIVVELG------TNPLKS 159

Query: 239 RALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAIT 298
             +E+       +L  + I  T +  +                     L  L+ + N IT
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITTIP-QGLP-------------PSLTELHLDGNKIT 205

Query: 299 A--SSSLENLASLHE--------------ASVGFILLHE-DLTSAKLQSVSNFLSGLSHA 341
              ++SL+ L +L +              +      L E  L + KL  V   L+   + 
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265

Query: 342 RSLTLESPCIEILSNRNYFTNLHTFTNLKSLE-LHTGFNKHNVQGL-ACLFRSSPSIHTL 399
           + + L +  I  + + N F      T   S   +    N      +    FR       +
Sbjct: 266 QVVYLHNNNISAIGS-NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324

Query: 400 IL 401
            L
Sbjct: 325 QL 326

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 26/179 (14%), Positives = 58/179 (32%), Gaps = 44/179 (24%)

Query: 210 DLFTDSSFPHLKKLDL-----------DACYGLKQLKVGCRALEDLT-LDNCIQLCGLDI 257
            +F D    +  K +L               G++        ++ L  +     L  L +
Sbjct: 11  QVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHL 70

Query: 258 FGTKLERLR-VASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGF 316
              ++  L  +                 +KL+ L+   N +    +L  + S        
Sbjct: 71  SHNQISDLSPLKDL--------------TKLEELSVNRNRLK---NLNGIPSAC------ 107

Query: 317 ILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELH 375
            L    L + +L+   + L  L +   L++ +  ++ +        L   + L+ L+LH
Sbjct: 108 -LSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIV------MLGFLSKLEVLDLH 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	512
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.24
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.1
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.02
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.01
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.99
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.98
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.95
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.88
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.87
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.85
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.85
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.83
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.82
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.82
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.81
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.81
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.81
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.8
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.78
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.76
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.76
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.74
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.74
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.74
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.72
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.72
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.71
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.67
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.67
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.66
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.64
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.64
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.64
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.63
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.6
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.58
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.57
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.56
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.55
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.53
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.52
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.52
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.51
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.5
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.5
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.49
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.46
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.46
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.43
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.42
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.42
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.42
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.39
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.39
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.37
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.33
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.31
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.31
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.3
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.3
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.27
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.1
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.03
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.02
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.99
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.99
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.93
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.88
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.88
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.87
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.8
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.72
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.67
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.67
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.62
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.61
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.56
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.49
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.46
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.42
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.41
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.37
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.28
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.27
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.21
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.21
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.2
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.98
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.87
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.85
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.81
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.8
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.71
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.63
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.54
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.18
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.12
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.07
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	95.72
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.96
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	94.33
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.19
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	94.01
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	93.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	93.07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	88.72
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	87.99
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	84.81

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=4.9e-23  Score=218.78  Aligned_cols=215  Identities=17%  Similarity=0.227  Sum_probs=126.9

Q ss_pred             CCccCCCChHHHHHHHccCC-chhhHHHhhhcHhHHHhhcc-CCcccccCCCccccccCcccCcCCCCCcccchhhHhHH
Q 043655           23 IDRISDLPDAILHHILFLLP-IKSIAQTCTLSKRWRSLWCS-FPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDL  100 (512)
Q Consensus        23 ~D~is~LPdevl~~Ils~L~-~~d~~rts~lSrrWr~lw~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (512)
                      .|+|+.|||||+.+||+||| ++|+++++.|||||+++... ...+++.....                         ..
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~-------------------------~~   57 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYA-------------------------VS   57 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTS-------------------------SC
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccc-------------------------cC
Confidence            48999999999999999999 99999999999999987211 11222221100                         00


Q ss_pred             HHHHHhhhcccCceeeeEEeeccCc-----------chhhHHHHHHHh--cCCceeEEEeccCCCCCCCccee-ccCCcc
Q 043655          101 ISQVLSIRDKHSYIRVLRFRAHLSF-----------SCLNGLIRRAIR--HNVEELDIEVATDDYFNLPRCVI-TSDSLR  166 (512)
Q Consensus       101 v~~~l~~~~~~~~i~~l~l~~~~~~-----------~~~~~wi~~~~~--~~v~~L~l~~~~~~~~~lp~~l~-~~~~L~  166 (512)
                      ...++.   +.+.++.+.+......           ..+..|+.....  +++++|++..+.-.. ..+..+. .+++|+
T Consensus        58 ~~~~~~---~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~  133 (594)
T 2p1m_B           58 PATVIR---RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTD-DCLELIAKSFKNFK  133 (594)
T ss_dssp             HHHHHH---HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH-HHHHHHHHHCTTCC
T ss_pred             HHHHHh---hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcH-HHHHHHHHhCCCCc
Confidence            011221   2355788877753211           345678877764  688998887432111 1111222 578999


Q ss_pred             EEEEecccCccccCCCccccccCcccceEEeeeEEeeCcc--chhhhhcCCCCcccceecccccc------ccchhcccc
Q 043655          167 VFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQP--CLLDLFTDSSFPHLKKLDLDACY------GLKQLKVGC  238 (512)
Q Consensus       167 ~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~l~~l~~~~~~p~L~~L~L~~~~------~l~~l~~~c  238 (512)
                      +|+|.+|. .+...........+++|++|+|++|.+.+..  .+..+.  ..|++|++|+|.++.      .+..+...|
T Consensus       134 ~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~  210 (594)
T 2p1m_B          134 VLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP--DTYTSLVSLNISCLASEVSFSALERLVTRC  210 (594)
T ss_dssp             EEEEESCE-EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC--TTCCCCCEEECTTCCSCCCHHHHHHHHHHC
T ss_pred             EEeCCCcC-CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh--hcCCcCcEEEecccCCcCCHHHHHHHHHhC
Confidence            99998842 1111000112336899999999988876532  233332  378899999998874      355666678


Q ss_pred             cccceeeeccccCcccee---EeccCcceEEEee
Q 043655          239 RALEDLTLDNCIQLCGLD---IFGTKLERLRVAS  269 (512)
Q Consensus       239 p~Le~L~l~~c~~l~~~~---v~~~~L~~L~l~~  269 (512)
                      |+|+.|++.+|..+..+.   ...++|+.|.+..
T Consensus       211 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG  244 (594)
T ss_dssp             TTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred             CCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence            999999998885433211   1125566665443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.87  E-value=1.5e-22  Score=214.92  Aligned_cols=282  Identities=13%  Similarity=0.127  Sum_probs=158.5

Q ss_pred             CCCChHHHHHHHccC-CchhhHHHhhhcHhHHHhhccCC-cccccCCCccccccCcccCcCCCCCcccchhhHhHHHHHH
Q 043655           27 SDLPDAILHHILFLL-PIKSIAQTCTLSKRWRSLWCSFP-DLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQV  104 (512)
Q Consensus        27 s~LPdevl~~Ils~L-~~~d~~rts~lSrrWr~lw~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  104 (512)
                      ++||||++.+||+|| +++|++++++|||||++++.... .+.+..                         .+..++..+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-------------------------~~~~~~~~~   68 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-------------------------CYTATPDRL   68 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-------------------------GGGSCHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-------------------------ccccChHHH
Confidence            489999999999999 79999999999999999854433 122111                         111223333


Q ss_pred             HhhhcccCceeeeEEeeccC-----------cchhhHHHHHHHh--cCCceeEEEeccCCCCCCCcceec-cCC-ccEEE
Q 043655          105 LSIRDKHSYIRVLRFRAHLS-----------FSCLNGLIRRAIR--HNVEELDIEVATDDYFNLPRCVIT-SDS-LRVFK  169 (512)
Q Consensus       105 l~~~~~~~~i~~l~l~~~~~-----------~~~~~~wi~~~~~--~~v~~L~l~~~~~~~~~lp~~l~~-~~~-L~~L~  169 (512)
                      +..   .+.++.+.+.....           ......|+.....  +++++|++....-.. ..+..+.. +++ |++|+
T Consensus        69 ~~~---~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~~L~~L~  144 (592)
T 3ogk_B           69 SRR---FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSD-LDLDRLAKARADDLETLK  144 (592)
T ss_dssp             HHH---CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH-HHHHHHHHHHGGGCCEEE
T ss_pred             HHh---CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecH-HHHHHHHHhccccCcEEE
Confidence            332   34588888865211           1234567777664  688998887432110 01111222 444 99999


Q ss_pred             EecccCccccCCCccccccCcccceEEeeeEEeeCccc--hhhhhcCCCCcccceecccccc-------ccchhcccccc
Q 043655          170 LRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPC--LLDLFTDSSFPHLKKLDLDACY-------GLKQLKVGCRA  240 (512)
Q Consensus       170 L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~--l~~l~~~~~~p~L~~L~L~~~~-------~l~~l~~~cp~  240 (512)
                      |.+|. .............+++|++|+|++|.+.+.+.  +..+.  ..+|+|++|+|.++.       .+..+...||+
T Consensus       145 L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~  221 (592)
T 3ogk_B          145 LDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA--QHNTSLEVLNFYMTEFAKISPKDLETIARNCRS  221 (592)
T ss_dssp             EESCE-EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH--HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred             CcCCC-CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH--hcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence            98853 11111111123368999999999998865421  33333  368999999997654       34556678899


Q ss_pred             cceeeeccccCcc--ceeEeccCcceEEEeeeccccC--CCceEEEeCCCcceEEeeccccCCC-ccccCcccceeeEEe
Q 043655          241 LEDLTLDNCIQLC--GLDIFGTKLERLRVASCFDAYC--DKSWVKIDASKLKVLNWEYNAITAS-SSLENLASLHEASVG  315 (512)
Q Consensus       241 Le~L~l~~c~~l~--~~~v~~~~L~~L~l~~c~~~~~--~~~~~~i~~p~L~~L~~~~~~~~~~-~~l~~~~~L~~l~l~  315 (512)
                      |+.|++.+|....  ..-...++|++|.+..+.....  .........++|+.+.+.+...... ..+..+++|+++++.
T Consensus       222 L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls  301 (592)
T 3ogk_B          222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL  301 (592)
T ss_dssp             CCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEET
T ss_pred             CcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecC
Confidence            9999999875322  1111236788888765321100  0001111345566665544321111 223445566666665


Q ss_pred             eEEcccchhHHHHhHHHHHhhcCCcccEeeec
Q 043655          316 FILLHEDLTSAKLQSVSNFLSGLSHARSLTLE  347 (512)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~  347 (512)
                      .+.. ++      ..+..++..+++|+.|++.
T Consensus       302 ~~~l-~~------~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          302 YALL-ET------EDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             TCCC-CH------HHHHHHHTTCTTCCEEEEE
T ss_pred             CCcC-CH------HHHHHHHHhCcCCCEEecc
Confidence            4431 11      1123345555555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=3.8e-19  Score=174.90  Aligned_cols=278  Identities=17%  Similarity=0.202  Sum_probs=155.8

Q ss_pred             CCccCCCChHHHHHHHccCCchhhHHHhhhcHhHHHhhcc---CCcccccCCCccccccCcccCcCCCCCcccchhhHhH
Q 043655           23 IDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCS---FPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMD   99 (512)
Q Consensus        23 ~D~is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (512)
                      ...|++||||++.+||++|+.+|+++++.|||+|+++...   ...+++.....                      . ..
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~----------------------~-~~   62 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL----------------------H-PD   62 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC----------------------C-HH
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC----------------------C-HH
Confidence            3568999999999999999999999999999999998532   11122221100                      0 01


Q ss_pred             HHHHHHhhhcccCceeeeEEeeccCcchhhHHHHHHHhcCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCcccc
Q 043655          100 LISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRL  179 (512)
Q Consensus       100 ~v~~~l~~~~~~~~i~~l~l~~~~~~~~~~~wi~~~~~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~  179 (512)
                      .                               +.....++++.+++....  ....+..++.+++|++|+|++|.  +..
T Consensus        63 ~-------------------------------~~~~~~~~l~~L~l~~n~--l~~~~~~~~~~~~L~~L~L~~~~--l~~  107 (336)
T 2ast_B           63 V-------------------------------TGRLLSQGVIAFRCPRSF--MDQPLAEHFSPFRVQHMDLSNSV--IEV  107 (336)
T ss_dssp             H-------------------------------HHHHHHTTCSEEECTTCE--ECSCCCSCCCCBCCCEEECTTCE--ECH
T ss_pred             H-------------------------------HHhhhhccceEEEcCCcc--ccccchhhccCCCCCEEEccCCC--cCH
Confidence            1                               112222344444443211  11223335578889999998842  221


Q ss_pred             CCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc-----ccchhcccccccceeeeccccCccc
Q 043655          180 PPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY-----GLKQLKVGCRALEDLTLDNCIQLCG  254 (512)
Q Consensus       180 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~-----~l~~l~~~cp~Le~L~l~~c~~l~~  254 (512)
                      .........+++|++|+|+++.+.+. .... +  ..+|+|++|+|.+|.     ++..++..|++|++|++.+|..+..
T Consensus       108 ~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~-l--~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~  183 (336)
T 2ast_B          108 STLHGILSQCSKLQNLSLEGLRLSDP-IVNT-L--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE  183 (336)
T ss_dssp             HHHHHHHTTBCCCSEEECTTCBCCHH-HHHH-H--TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred             HHHHHHHhhCCCCCEEeCcCcccCHH-HHHH-H--hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence            10011234688999999988876532 1222 2  358899999998885     2445567788899999888854443


Q ss_pred             eeE-----ecc-CcceEEEeeecc-ccC-CCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHH
Q 043655          255 LDI-----FGT-KLERLRVASCFD-AYC-DKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSA  326 (512)
Q Consensus       255 ~~v-----~~~-~L~~L~l~~c~~-~~~-~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~  326 (512)
                      ..+     ..+ +|++|.+.+|.. ..+ ...                      ..+.++++|+.++++.+...++..  
T Consensus       184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~----------------------~~~~~~~~L~~L~l~~~~~l~~~~--  239 (336)
T 2ast_B          184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLS----------------------TLVRRCPNLVHLDLSDSVMLKNDC--  239 (336)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH----------------------HHHHHCTTCSEEECTTCTTCCGGG--
T ss_pred             HHHHHHHHhcccCCCEEEeCCCcccCCHHHHH----------------------HHHhhCCCCCEEeCCCCCcCCHHH--
Confidence            211     124 666666666531 100 000                      112234444444444332111111  


Q ss_pred             HHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCc
Q 043655          327 KLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIH  397 (512)
Q Consensus       327 ~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le  397 (512)
                           ...+..+++|+.|+++.+.  .+.... ......+++|++|+|..+   ....++..+.+.+|.|+
T Consensus       240 -----~~~l~~l~~L~~L~l~~~~--~~~~~~-~~~l~~~~~L~~L~l~~~---i~~~~~~~l~~~l~~L~  299 (336)
T 2ast_B          240 -----FQEFFQLNYLQHLSLSRCY--DIIPET-LLELGEIPTLKTLQVFGI---VPDGTLQLLKEALPHLQ  299 (336)
T ss_dssp             -----GGGGGGCTTCCEEECTTCT--TCCGGG-GGGGGGCTTCCEEECTTS---SCTTCHHHHHHHSTTSE
T ss_pred             -----HHHHhCCCCCCEeeCCCCC--CCCHHH-HHHHhcCCCCCEEeccCc---cCHHHHHHHHhhCcceE
Confidence                 1124556778888887664  111111 123446888999988765   22234555667788776

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.25  E-value=5.2e-12  Score=133.67  Aligned_cols=273  Identities=12%  Similarity=0.115  Sum_probs=151.6

Q ss_pred             cCceeeeEEeeccCcchhhHHHHHHHhcCCceeEEEeccC-CCCCCCcceeccCCccEEEEecccCccccCCC---cccc
Q 043655          111 HSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATD-DYFNLPRCVITSDSLRVFKLRSRYRGFRLPPS---SVVA  186 (512)
Q Consensus       111 ~~~i~~l~l~~~~~~~~~~~wi~~~~~~~v~~L~l~~~~~-~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~---~~~~  186 (512)
                      .+.++.+.+....-.+..-.|+......++++|++..+.. ....++.....|++|++|+|++|  .+.-...   ....
T Consensus       111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~--~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES--SFSEKDGKWLHELA  188 (592)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC--EEECCCSHHHHHHH
T ss_pred             CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc--cccCcchhHHHHHH
Confidence            3568888887642223344566665556799999985431 11112222236899999999985  2211110   0123


Q ss_pred             ccCcccceEEeeeEEee--CccchhhhhcCCCCcccceecccccc--ccchhcccccccceeeeccccCccc-----ee-
Q 043655          187 GGFRSLHTLSLSLVILF--NQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCG-----LD-  256 (512)
Q Consensus       187 ~~~~~L~~L~L~~~~~~--~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~-----~~-  256 (512)
                      ..+++|++|+|+++.+.  +...+..++.  +||+|++|+|.+|.  ++...+..+++|++|.+..+.....     .. 
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIAR--NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHH--HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHh--hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence            46899999999988886  2345555553  79999999999986  5667778899999999986432210     01 


Q ss_pred             EeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC---ccccCcccceeeEEeeEEcccchhHHHHhHHHH
Q 043655          257 IFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS---SSLENLASLHEASVGFILLHEDLTSAKLQSVSN  333 (512)
Q Consensus       257 v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~---~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~  333 (512)
                      ...++|++|.+.++...  ....+...+++|++|+++++.+...   ..+..+++|+.+++..+  .      ....+..
T Consensus       267 ~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~------~~~~l~~  336 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGPN--EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--I------GDRGLEV  336 (592)
T ss_dssp             CCCTTCCEEEETTCCTT--TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--G------HHHHHHH
T ss_pred             hccccccccCccccchh--HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--c------CHHHHHH
Confidence            11256666666553211  1111112456777777776553221   11356677777766511  1      1122444


Q ss_pred             HhhcCCcccEeeecc-----------hhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655          334 FLSGLSHARSLTLES-----------PCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK  402 (512)
Q Consensus       334 ~l~~l~~l~~L~l~~-----------~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~  402 (512)
                      +...+++|+.|++..           ..+..   .........+++|++|.+..  ...+..++..+.+.||+|+.|.+.
T Consensus       337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~---~~~~~l~~~~~~L~~L~l~~--~~l~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQ---RGLIALAQGCQELEYMAVYV--SDITNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             HHHHCTTCCEEEEECCCCSSTTSSTTCCCCH---HHHHHHHHHCTTCSEEEEEE--SCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred             HHHhCCCCCEEEeecCccccccccccCccCH---HHHHHHHhhCccCeEEEeec--CCccHHHHHHHHhhCCCCcEEEEe
Confidence            556666777777762           11100   00001112355666666622  222334445555556666666664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.24  E-value=3.3e-11  Score=118.53  Aligned_cols=227  Identities=18%  Similarity=0.182  Sum_probs=135.5

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      ..++.|++....  ...+|. +..+++|++|+|++|.. ..+++    ...+++|++|+|+++.+.+-+.+      ..+
T Consensus        44 ~~L~~L~l~~~~--i~~~~~-~~~~~~L~~L~l~~n~i-~~~~~----~~~l~~L~~L~L~~n~i~~~~~~------~~l  109 (347)
T 4fmz_A           44 ESITKLVVAGEK--VASIQG-IEYLTNLEYLNLNGNQI-TDISP----LSNLVKLTNLYIGTNKITDISAL------QNL  109 (347)
T ss_dssp             TTCSEEECCSSC--CCCCTT-GGGCTTCCEEECCSSCC-CCCGG----GTTCTTCCEEECCSSCCCCCGGG------TTC
T ss_pred             ccccEEEEeCCc--cccchh-hhhcCCccEEEccCCcc-ccchh----hhcCCcCCEEEccCCcccCchHH------cCC
Confidence            566666665332  223333 45678888888887421 11221    34678888888888776653322      467


Q ss_pred             cccceecccccc--ccchhcccccccceeeeccccCccceeEe--ccCcceEEEeeeccccCCCceEEEeCCCcceEEee
Q 043655          218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIF--GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWE  293 (512)
Q Consensus       218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~--~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~  293 (512)
                      ++|++|++.++.  .+.. +..+++|+.|++.+|.....+...  .++|+.|.+.+|.......   ....++|+.|.++
T Consensus       110 ~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~  185 (347)
T 4fmz_A          110 TNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLN  185 (347)
T ss_dssp             TTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECT
T ss_pred             CcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEcc
Confidence            888888887775  3333 557788888888888654433221  2677888877764332111   1146778888887


Q ss_pred             ccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEE
Q 043655          294 YNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLE  373 (512)
Q Consensus       294 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  373 (512)
                      ++.+.....+..+++|+.+++..+...+..          .+..+++++.|+++.+.+....      ....+++|++|+
T Consensus       186 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~  249 (347)
T 4fmz_A          186 YNQIEDISPLASLTSLHYFTAYVNQITDIT----------PVANMTRLNSLKIGNNKITDLS------PLANLSQLTWLE  249 (347)
T ss_dssp             TSCCCCCGGGGGCTTCCEEECCSSCCCCCG----------GGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEE
T ss_pred             CCcccccccccCCCccceeecccCCCCCCc----------hhhcCCcCCEEEccCCccCCCc------chhcCCCCCEEE
Confidence            776655544667777777777655432211          1566777788877766543222      134667777777


Q ss_pred             EEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          374 LHTGFNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       374 L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      |..+.-. +.    ..+..+|+|+.|++..
T Consensus       250 l~~n~l~-~~----~~~~~l~~L~~L~l~~  274 (347)
T 4fmz_A          250 IGTNQIS-DI----NAVKDLTKLKMLNVGS  274 (347)
T ss_dssp             CCSSCCC-CC----GGGTTCTTCCEEECCS
T ss_pred             CCCCccC-CC----hhHhcCCCcCEEEccC
Confidence            7654211 11    2356777777777754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.19  E-value=6.6e-12  Score=132.92  Aligned_cols=130  Identities=19%  Similarity=0.216  Sum_probs=85.3

Q ss_pred             cCCceeEEEeccCC-CCCC-Cc-----------c-eeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEee
Q 043655          138 HNVEELDIEVATDD-YFNL-PR-----------C-VITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILF  203 (512)
Q Consensus       138 ~~v~~L~l~~~~~~-~~~l-p~-----------~-l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  203 (512)
                      .+++.|++..+... ...+ |.           . ...+++|++|+|++|.  +...........+++|++|+|.+|...
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV--VTDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB--CCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE--EcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            67899998864311 1111 11           1 1257899999999842  221111112235899999999998554


Q ss_pred             CccchhhhhcCCCCcccceecccccc-------ccchhcccccccceeeecccc-Ccc-----ceeEeccCcceEEEeee
Q 043655          204 NQPCLLDLFTDSSFPHLKKLDLDACY-------GLKQLKVGCRALEDLTLDNCI-QLC-----GLDIFGTKLERLRVASC  270 (512)
Q Consensus       204 ~~~~l~~l~~~~~~p~L~~L~L~~~~-------~l~~l~~~cp~Le~L~l~~c~-~l~-----~~~v~~~~L~~L~l~~c  270 (512)
                      ++.++..+..  +||+|++|+|.+|.       .+..+...|++|+.|++.+|. .+.     .+....++|++|.+.+|
T Consensus       144 ~~~~l~~~~~--~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          144 STDGLAAIAA--TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EHHHHHHHHH--HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CHHHHHHHHH--hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            4445555553  79999999999886       245566689999999999986 221     11122489999999987


Q ss_pred             c
Q 043655          271 F  271 (512)
Q Consensus       271 ~  271 (512)
                      .
T Consensus       222 ~  222 (594)
T 2p1m_B          222 V  222 (594)
T ss_dssp             S
T ss_pred             C
Confidence            3

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.12  E-value=5.9e-11  Score=116.70  Aligned_cols=232  Identities=19%  Similarity=0.146  Sum_probs=151.6

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      ..++.|++....  ...+| .+..+++|++|+|++|... .+++    ...+++|++|+++++.....  +..+   ..+
T Consensus        88 ~~L~~L~L~~n~--i~~~~-~~~~l~~L~~L~l~~n~i~-~~~~----~~~l~~L~~L~l~~n~~~~~--~~~~---~~l  154 (347)
T 4fmz_A           88 VKLTNLYIGTNK--ITDIS-ALQNLTNLRELYLNEDNIS-DISP----LANLTKMYSLNLGANHNLSD--LSPL---SNM  154 (347)
T ss_dssp             TTCCEEECCSSC--CCCCG-GGTTCTTCSEEECTTSCCC-CCGG----GTTCTTCCEEECTTCTTCCC--CGGG---TTC
T ss_pred             CcCCEEEccCCc--ccCch-HHcCCCcCCEEECcCCccc-Cchh----hccCCceeEEECCCCCCccc--ccch---hhC
Confidence            567777776432  22333 3557889999999884211 1221    34688999999988744332  1111   478


Q ss_pred             cccceecccccc--ccchhcccccccceeeeccccCccceeEe-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeec
Q 043655          218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEY  294 (512)
Q Consensus       218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~  294 (512)
                      ++|+.|++.++.  .+.. +..+++|+.|++.+|.......+. .++|+.|.+.++.......   ....++|++|.+++
T Consensus       155 ~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~  230 (347)
T 4fmz_A          155 TGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGN  230 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCS
T ss_pred             CCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch---hhcCCcCCEEEccC
Confidence            999999998886  3333 567899999999988532211122 2788888888764432111   12568899999988


Q ss_pred             cccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEE
Q 043655          295 NAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLEL  374 (512)
Q Consensus       295 ~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L  374 (512)
                      +.+.....+..+++|+.++++.+...+-          ..+..+++++.|+++.+.+..+.      ....+++|++|+|
T Consensus       231 n~l~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~L  294 (347)
T 4fmz_A          231 NKITDLSPLANLSQLTWLEIGTNQISDI----------NAVKDLTKLKMLNVGSNQISDIS------VLNNLSQLNSLFL  294 (347)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCCCG------GGGGCTTCSEEEC
T ss_pred             CccCCCcchhcCCCCCEEECCCCccCCC----------hhHhcCCCcCEEEccCCccCCCh------hhcCCCCCCEEEC
Confidence            8776655578889999998886644321          23677888999999877644331      3456788999988


Q ss_pred             EeeccCCcHHHHHHHHhhCCCCcEEEEEeec
Q 043655          375 HTGFNKHNVQGLACLFRSSPSIHTLILKIIN  405 (512)
Q Consensus       375 ~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~~  405 (512)
                      ..+.-..   .....+..+|+|+.|++....
T Consensus       295 ~~n~l~~---~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          295 NNNQLGN---EDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             CSSCCCG---GGHHHHHTCTTCSEEECCSSS
T ss_pred             cCCcCCC---cChhHhhccccCCEEEccCCc
Confidence            7642221   234566788999999887543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.10  E-value=2.4e-10  Score=117.19  Aligned_cols=34  Identities=15%  Similarity=0.081  Sum_probs=21.5

Q ss_pred             hcCccEEEEeeeccchhHHHHHHHHHhcCccccceEEEec
Q 043655          441 LNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCTG  480 (512)
Q Consensus       441 ~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~L~~m~i~~~  480 (512)
                      +.+|+.+.+.+-.-.... .     +...+.|+.+.+...
T Consensus       308 l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          308 LKNLTYLTLYFNNISDIS-P-----VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             CTTCSEEECCSSCCSCCG-G-----GGGCTTCCEEECCSS
T ss_pred             CCCCCEEECcCCcCCCch-h-----hccCccCCEeECCCC
Confidence            577888888764322211 1     467788888888754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.06  E-value=2.6e-10  Score=111.25  Aligned_cols=217  Identities=19%  Similarity=0.232  Sum_probs=114.5

Q ss_pred             hcCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          137 RHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       137 ~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      ..+++.|++....  ...+|..++.+++|++|+|++|... .+|.   ....+++|++|+|+++.+..-   ..-+  ..
T Consensus        80 ~~~l~~L~L~~n~--l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~---~~~~l~~L~~L~Ls~n~l~~l---p~~l--~~  148 (328)
T 4fcg_A           80 QPGRVALELRSVP--LPQFPDQAFRLSHLQHMTIDAAGLM-ELPD---TMQQFAGLETLTLARNPLRAL---PASI--AS  148 (328)
T ss_dssp             STTCCEEEEESSC--CSSCCSCGGGGTTCSEEEEESSCCC-CCCS---CGGGGTTCSEEEEESCCCCCC---CGGG--GG
T ss_pred             ccceeEEEccCCC--chhcChhhhhCCCCCEEECCCCCcc-chhH---HHhccCCCCEEECCCCccccC---cHHH--hc
Confidence            3577777776433  3478888888999999999986433 3443   135789999999998877632   1112  25


Q ss_pred             Ccccceeccccccccchh------------cccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeC
Q 043655          217 FPHLKKLDLDACYGLKQL------------KVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDA  284 (512)
Q Consensus       217 ~p~L~~L~L~~~~~l~~l------------~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~  284 (512)
                      +++|+.|+|.+|..+..+            +.++++|+.|++.+|.. ..+.-                     . ....
T Consensus       149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~---------------------~-l~~l  205 (328)
T 4fcg_A          149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPA---------------------S-IANL  205 (328)
T ss_dssp             CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCG---------------------G-GGGC
T ss_pred             CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchH---------------------h-hcCC
Confidence            677777777776522221            12355666666655531 11100                     0 0023


Q ss_pred             CCcceEEeeccccCCC-ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccc
Q 043655          285 SKLKVLNWEYNAITAS-SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNL  363 (512)
Q Consensus       285 p~L~~L~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~  363 (512)
                      ++|++|.++++.+... ..++.+++|+.++++.+...+.        +...+..+++|+.|+++.+.....    .+...
T Consensus       206 ~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~--------~p~~~~~l~~L~~L~L~~n~~~~~----~p~~~  273 (328)
T 4fcg_A          206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN--------YPPIFGGRAPLKRLILKDCSNLLT----LPLDI  273 (328)
T ss_dssp             TTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB--------CCCCTTCCCCCCEEECTTCTTCCB----CCTTG
T ss_pred             CCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh--------hHHHhcCCCCCCEEECCCCCchhh----cchhh
Confidence            3444444444433221 1234455555555544322111        011244566667777665432110    01133


Q ss_pred             ccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655          364 HTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK  402 (512)
Q Consensus       364 ~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~  402 (512)
                      ..+++|++|+|..+...   ..++..+..+|+|+.+.+.
T Consensus       274 ~~l~~L~~L~L~~n~~~---~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          274 HRLTQLEKLDLRGCVNL---SRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             GGCTTCCEEECTTCTTC---CCCCGGGGGSCTTCEEECC
T ss_pred             hcCCCCCEEeCCCCCch---hhccHHHhhccCceEEeCC
Confidence            45667777777653211   1233445667777777654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.06  E-value=6.2e-10  Score=114.10  Aligned_cols=98  Identities=16%  Similarity=0.206  Sum_probs=51.2

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      ..++.|++....  ...++. +..+++|++|+|++|... .+++    ...+++|++|+|+++.+.+...+      ..+
T Consensus        90 ~~L~~L~l~~n~--l~~~~~-~~~l~~L~~L~L~~n~l~-~~~~----~~~l~~L~~L~l~~n~l~~~~~~------~~l  155 (466)
T 1o6v_A           90 TKLVDILMNNNQ--IADITP-LANLTNLTGLTLFNNQIT-DIDP----LKNLTNLNRLELSSNTISDISAL------SGL  155 (466)
T ss_dssp             TTCCEEECCSSC--CCCCGG-GTTCTTCCEEECCSSCCC-CCGG----GTTCTTCSEEEEEEEEECCCGGG------TTC
T ss_pred             ccCCEEECCCCc--cccChh-hcCCCCCCEEECCCCCCC-CChH----HcCCCCCCEEECCCCccCCChhh------ccC
Confidence            456666554322  223333 446777888888774211 1211    34677888888888777654322      245


Q ss_pred             cccceecccccc-ccchhcccccccceeeecccc
Q 043655          218 PHLKKLDLDACY-GLKQLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       218 p~L~~L~L~~~~-~l~~l~~~cp~Le~L~l~~c~  250 (512)
                      ++|+.|++.+.. .+.. +..+++|+.|++.+|.
T Consensus       156 ~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          156 TSLQQLSFGNQVTDLKP-LANLTTLERLDISSNK  188 (466)
T ss_dssp             TTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             CcccEeecCCcccCchh-hccCCCCCEEECcCCc
Confidence            566665554322 1111 3445555555555553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.05  E-value=3.8e-11  Score=122.90  Aligned_cols=233  Identities=15%  Similarity=0.098  Sum_probs=137.8

Q ss_pred             CccEEEEecccCccccCC---CccccccCcccceEEeeeEEeeCc--cchhhhhcCCCCcccceecccccc-------cc
Q 043655          164 SLRVFKLRSRYRGFRLPP---SSVVAGGFRSLHTLSLSLVILFNQ--PCLLDLFTDSSFPHLKKLDLDACY-------GL  231 (512)
Q Consensus       164 ~L~~L~L~~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~--~~l~~l~~~~~~p~L~~L~L~~~~-------~l  231 (512)
                      +|++|+|++|.  +....   .......+++|++|+|+++.+.+.  ..+...+. ...++|++|+|.+|.       .+
T Consensus        86 ~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           86 KIQKLSLQNCC--LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL-DPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             CCCEEECTTSC--CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT-STTCCCCEEECTTSCCBGGGHHHH
T ss_pred             ceeEEEccCCC--CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh-cCCCcceEEECCCCCCCHHHHHHH
Confidence            68888888742  22100   001134578888888888776542  11222111 245678888888875       12


Q ss_pred             chhcccccccceeeeccccCccceeEe---------ccCcceEEEeeeccccCCC---ceEEEeCCCcceEEeeccccCC
Q 043655          232 KQLKVGCRALEDLTLDNCIQLCGLDIF---------GTKLERLRVASCFDAYCDK---SWVKIDASKLKVLNWEYNAITA  299 (512)
Q Consensus       232 ~~l~~~cp~Le~L~l~~c~~l~~~~v~---------~~~L~~L~l~~c~~~~~~~---~~~~i~~p~L~~L~~~~~~~~~  299 (512)
                      ...+..+++|++|++.+|. +....+.         .++|++|.+.+|.....+.   .......++|++|+++++.+..
T Consensus       163 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence            3445567888888888876 3221111         2488889888875432110   0011146889999988876532


Q ss_pred             C-------ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccc-ccccccccce
Q 043655          300 S-------SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFT-NLHTFTNLKS  371 (512)
Q Consensus       300 ~-------~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~-~~~~~~~L~~  371 (512)
                      .       .....+++|+.++++.+...+.    ....+...+..+++++.|+++.+.+.......... .....++|++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~  317 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAK----GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES  317 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHH----HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHH----HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence            1       1123578899988887643322    12335566778899999999877543221111101 1123358999


Q ss_pred             EEEEeecc-CCcHHHHHHHHhhCCCCcEEEEEee
Q 043655          372 LELHTGFN-KHNVQGLACLFRSSPSIHTLILKII  404 (512)
Q Consensus       372 L~L~~~~~-~~~~~~l~~~L~~cp~Le~L~l~~~  404 (512)
                      |+|..+.- ......+...+..+|+|++|++...
T Consensus       318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  351 (461)
T 1z7x_W          318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN  351 (461)
T ss_dssp             EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred             eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence            98876432 2334567788899999999998653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.02  E-value=1.7e-10  Score=117.83  Aligned_cols=209  Identities=21%  Similarity=0.126  Sum_probs=96.2

Q ss_pred             ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhccc
Q 043655          161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKVG  237 (512)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~~  237 (512)
                      .+++|++|+|++|... .+++..  ..++++|++|+|+++.+..-..  ..+  ..+++|+.|+|.++.  .+. ..+..
T Consensus        97 ~l~~L~~L~Ls~n~i~-~~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~  169 (452)
T 3zyi_A           97 HLHHLEVLQLGRNSIR-QIEVGA--FNGLASLNTLELFDNWLTVIPS--GAF--EYLSKLRELWLRNNPIESIPSYAFNR  169 (452)
T ss_dssp             TCTTCCEEECCSSCCC-EECTTT--TTTCTTCCEEECCSSCCSBCCT--TTS--SSCTTCCEEECCSCCCCEECTTTTTT
T ss_pred             CCCCCCEEECCCCccC-CcChhh--ccCcccCCEEECCCCcCCccCh--hhh--cccCCCCEEECCCCCcceeCHhHHhc
Confidence            4556666666653211 122111  2345666666666555443110  001  245666666666554  111 23345


Q ss_pred             ccccceeeeccccCccceeEe----ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCccccee
Q 043655          238 CRALEDLTLDNCIQLCGLDIF----GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLHE  311 (512)
Q Consensus       238 cp~Le~L~l~~c~~l~~~~v~----~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~  311 (512)
                      +++|+.|++.+|..+..+...    .++|+.|.+.++......  . ....++|+.|+++++.+...  ..+.++++|+.
T Consensus       170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  246 (452)
T 3zyi_A          170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--N-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK  246 (452)
T ss_dssp             CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--C-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCE
T ss_pred             CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--c-ccccccccEEECcCCcCcccCcccccCccCCCE
Confidence            566666666665544433221    145666666554322110  0 11345666666665544322  23455666666


Q ss_pred             eEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeecc--CCcHHHHHHH
Q 043655          312 ASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFN--KHNVQGLACL  389 (512)
Q Consensus       312 l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~--~~~~~~l~~~  389 (512)
                      ++++.+......        ...+..+++|+.|+|+.+.+..+..    .....+++|+.|+|..+.-  .++..++..+
T Consensus       247 L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~  314 (452)
T 3zyi_A          247 LWVMNSQVSLIE--------RNAFDGLASLVELNLAHNNLSSLPH----DLFTPLRYLVELHLHHNPWNCDCDILWLAWW  314 (452)
T ss_dssp             EECTTSCCCEEC--------TTTTTTCTTCCEEECCSSCCSCCCT----TSSTTCTTCCEEECCSSCEECSTTTHHHHHH
T ss_pred             EEeCCCcCceEC--------HHHhcCCCCCCEEECCCCcCCccCh----HHhccccCCCEEEccCCCcCCCCCchHHHHH
Confidence            666543322110        1124556666666666554432221    1233456666666654321  2334444444


Q ss_pred             Hh
Q 043655          390 FR  391 (512)
Q Consensus       390 L~  391 (512)
                      ++
T Consensus       315 l~  316 (452)
T 3zyi_A          315 LR  316 (452)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.01  E-value=2.1e-09  Score=105.95  Aligned_cols=235  Identities=16%  Similarity=0.093  Sum_probs=145.8

Q ss_pred             CCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc
Q 043655          150 DDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY  229 (512)
Q Consensus       150 ~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~  229 (512)
                      .....+|..+.  ++|++|+|+++... .+++..  ...+++|++|+|+++.+.+..  ...+  ..+++|++|+|.++.
T Consensus        41 ~~l~~iP~~~~--~~L~~L~l~~n~i~-~~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~--~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           41 GSLNSIPSGLT--EAVKSLDLSNNRIT-YISNSD--LQRCVNLQALVLTSNGINTIE--EDSF--SSLGSLEHLDLSYNY  111 (353)
T ss_dssp             TTCSSCCTTCC--TTCCEEECTTSCCC-EECTTT--TTTCTTCCEEECTTSCCCEEC--TTTT--TTCTTCCEEECCSSC
T ss_pred             CCccccccccc--ccCcEEECCCCcCc-ccCHHH--hccCCCCCEEECCCCccCccC--Hhhc--CCCCCCCEEECCCCc
Confidence            34456666554  47899999885221 233221  346889999999887765421  1111  368899999998875


Q ss_pred             --ccc-hhcccccccceeeeccccCccceeE-----eccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC-
Q 043655          230 --GLK-QLKVGCRALEDLTLDNCIQLCGLDI-----FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS-  300 (512)
Q Consensus       230 --~l~-~l~~~cp~Le~L~l~~c~~l~~~~v-----~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~-  300 (512)
                        .+. ..+..+++|++|++.++.. ..+..     ..++|++|.+.++..............++|+.|.++++.+... 
T Consensus       112 l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  190 (353)
T 2z80_A          112 LSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE  190 (353)
T ss_dssp             CSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred             CCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence              332 2356788999999988853 22221     1378999999887321100000001357889999988765432 


Q ss_pred             -ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeecc
Q 043655          301 -SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFN  379 (512)
Q Consensus       301 -~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  379 (512)
                       ..+.++++|++++++.+....        ....++..+++++.|+++...+........ ........++.+.|....-
T Consensus       191 ~~~l~~l~~L~~L~l~~n~l~~--------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~~~~~~l~~l~L~~~~l  261 (353)
T 2z80_A          191 PKSLKSIQNVSHLILHMKQHIL--------LLEIFVDVTSSVECLELRDTDLDTFHFSEL-STGETNSLIKKFTFRNVKI  261 (353)
T ss_dssp             TTTTTTCSEEEEEEEECSCSTT--------HHHHHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCBC
T ss_pred             HHHHhccccCCeecCCCCcccc--------chhhhhhhcccccEEECCCCcccccccccc-ccccccchhhccccccccc
Confidence             456788999999998664311        112345668999999999877554332211 1223456788888876422


Q ss_pred             C-CcHHHHHHHHhhCCCCcEEEEEe
Q 043655          380 K-HNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       380 ~-~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      . .....++..+..+|+|+.|++..
T Consensus       262 ~~~~l~~l~~~l~~l~~L~~L~Ls~  286 (353)
T 2z80_A          262 TDESLFQVMKLLNQISGLLELEFSR  286 (353)
T ss_dssp             CHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred             cCcchhhhHHHHhcccCCCEEECCC
Confidence            2 23445777889999999999964

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.99  E-value=2e-10  Score=116.93  Aligned_cols=210  Identities=18%  Similarity=0.140  Sum_probs=101.0

Q ss_pred             ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhccc
Q 043655          161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKVG  237 (512)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~~  237 (512)
                      .+++|++|+|++|... .+++.  ...++++|++|+|+++.+..-..  ..+  ..+++|+.|+|.++.  .+. ..+..
T Consensus        86 ~l~~L~~L~Ls~n~i~-~i~~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~--~~l~~L~~L~L~~N~i~~~~~~~~~~  158 (440)
T 3zyj_A           86 HLRHLEILQLSRNHIR-TIEIG--AFNGLANLNTLELFDNRLTTIPN--GAF--VYLSKLKELWLRNNPIESIPSYAFNR  158 (440)
T ss_dssp             SCSSCCEEECCSSCCC-EECGG--GGTTCSSCCEEECCSSCCSSCCT--TTS--CSCSSCCEEECCSCCCCEECTTTTTT
T ss_pred             CCCCCCEEECCCCcCC-ccChh--hccCCccCCEEECCCCcCCeeCH--hHh--hccccCceeeCCCCcccccCHHHhhh
Confidence            4566666666653211 11111  12346666666666665543210  011  245666666666654  111 23445


Q ss_pred             ccccceeeeccccCccceeEe----ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCccccee
Q 043655          238 CRALEDLTLDNCIQLCGLDIF----GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLHE  311 (512)
Q Consensus       238 cp~Le~L~l~~c~~l~~~~v~----~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~  311 (512)
                      +++|+.|++.+|..+..+...    .++|+.|.+.++......  . ....++|+.|+++++.+...  ..+.++++|+.
T Consensus       159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  235 (440)
T 3zyj_A          159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK  235 (440)
T ss_dssp             CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--C-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--c-cCCCcccCEEECCCCccCccChhhhccCccCCE
Confidence            666666666665544433221    156666666655332110  0 11345666666666544321  23456666666


Q ss_pred             eEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeec--cCCcHHHHHHH
Q 043655          312 ASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGF--NKHNVQGLACL  389 (512)
Q Consensus       312 l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~~~l~~~  389 (512)
                      ++++.+......        ...+..+++|+.|+|+.+.+..+..    .....+++|+.|+|..+.  ..++..++..+
T Consensus       236 L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~  303 (440)
T 3zyj_A          236 LWMIQSQIQVIE--------RNAFDNLQSLVEINLAHNNLTLLPH----DLFTPLHHLERIHLHHNPWNCNCDILWLSWW  303 (440)
T ss_dssp             EECTTCCCCEEC--------TTSSTTCTTCCEEECTTSCCCCCCT----TTTSSCTTCCEEECCSSCEECSSTTHHHHHH
T ss_pred             EECCCCceeEEC--------hhhhcCCCCCCEEECCCCCCCccCh----hHhccccCCCEEEcCCCCccCCCCchHHHHH
Confidence            666544322111        1224556666666666655432221    133455667777665432  12344555555


Q ss_pred             Hhh
Q 043655          390 FRS  392 (512)
Q Consensus       390 L~~  392 (512)
                      ++.
T Consensus       304 ~~~  306 (440)
T 3zyj_A          304 IKD  306 (440)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.98  E-value=7.2e-10  Score=117.55  Aligned_cols=231  Identities=18%  Similarity=0.154  Sum_probs=127.2

Q ss_pred             CCCCCcc-eeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccc
Q 043655          152 YFNLPRC-VITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYG  230 (512)
Q Consensus       152 ~~~lp~~-l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~  230 (512)
                      ...++.. +..+++|++|+|++|... .+|..   ...+++|++|+|+++.+.+...  ..+  ..+|+|++|++.++.-
T Consensus       266 l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~---l~~l~~L~~L~l~~n~l~~~~~--~~~--~~l~~L~~L~l~~n~~  337 (606)
T 3t6q_A          266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSG---LVGLSTLKKLVLSANKFENLCQ--ISA--SNFPSLTHLSIKGNTK  337 (606)
T ss_dssp             CSSCCTTTTTTCTTCSEEECTTSCCS-CCCSS---CCSCTTCCEEECTTCCCSBGGG--GCG--GGCTTCSEEECCSCSS
T ss_pred             cCccCHHHhccccCCCEEeccCCccC-CCChh---hcccccCCEEECccCCcCcCch--hhh--hccCcCCEEECCCCCc
Confidence            3445544 335788888888875322 33332   3467888888888877764211  111  3578888888887752


Q ss_pred             c----chhcccccccceeeeccccCcccee----E-eccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC-
Q 043655          231 L----KQLKVGCRALEDLTLDNCIQLCGLD----I-FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS-  300 (512)
Q Consensus       231 l----~~l~~~cp~Le~L~l~~c~~l~~~~----v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~-  300 (512)
                      .    ...+..+++|+.|++.+|.......    + ..++|+.|.+.++........ .....++|++|+++++.+... 
T Consensus       338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~  416 (606)
T 3t6q_A          338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRLKVKD  416 (606)
T ss_dssp             CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT-TTTTCTTCSEEECTTCCEECCT
T ss_pred             ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH-HhcCCccCCeEECCCCcCCCcc
Confidence            1    2235567888888888775322110    1 126788888877643211000 001356777887777654322 


Q ss_pred             --ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeec
Q 043655          301 --SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGF  378 (512)
Q Consensus       301 --~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  378 (512)
                        ..+.++++|+.++++.+.....        ....+..+++|+.|+++.+.+....... ......+++|+.|+|+.+.
T Consensus       417 ~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~l~~L~~L~Ls~n~  487 (606)
T 3t6q_A          417 AQSPFQNLHLLKVLNLSHSLLDIS--------SEQLFDGLPALQHLNLQGNHFPKGNIQK-TNSLQTLGRLEILVLSFCD  487 (606)
T ss_dssp             TCCTTTTCTTCCEEECTTCCCBTT--------CTTTTTTCTTCCEEECTTCBCGGGEECS-SCGGGGCTTCCEEECTTSC
T ss_pred             cchhhhCcccCCEEECCCCccCCc--------CHHHHhCCCCCCEEECCCCCCCcccccc-chhhccCCCccEEECCCCc
Confidence              2256777777777765543221        1123556777777777766543211110 1234456677777775432


Q ss_pred             cCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          379 NKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       379 ~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      -..   ..+..+..+|+|+.|++..
T Consensus       488 l~~---~~~~~~~~l~~L~~L~Ls~  509 (606)
T 3t6q_A          488 LSS---IDQHAFTSLKMMNHVDLSH  509 (606)
T ss_dssp             CCE---ECTTTTTTCTTCCEEECCS
T ss_pred             cCc---cChhhhccccCCCEEECCC
Confidence            110   1123345677777777754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.95  E-value=4.2e-10  Score=114.92  Aligned_cols=103  Identities=18%  Similarity=0.211  Sum_probs=45.0

Q ss_pred             CCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccc
Q 043655          285 SKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTN  362 (512)
Q Consensus       285 p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~  362 (512)
                      ++|+.|+++++.+...  ..++++++|+.++++.+...+..        ...+..+++|+.|+++.+.+..+..    ..
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~----~~  342 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID--------DNAFWGLTHLLKLNLSQNFLGSIDS----RM  342 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC--------TTTTTTCTTCCEEECCSSCCCEECG----GG
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC--------hhHhcCcccCCEEECCCCccCCcCh----hH
Confidence            3555555555443221  22445556666655543322110        1124455566666665554322110    12


Q ss_pred             cccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655          363 LHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK  402 (512)
Q Consensus       363 ~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~  402 (512)
                      ...+++|++|+|..+.-. .  ..+..+..+|+|+.|++.
T Consensus       343 ~~~l~~L~~L~Ls~N~l~-~--~~~~~~~~l~~L~~L~L~  379 (455)
T 3v47_A          343 FENLDKLEVLDLSYNHIR-A--LGDQSFLGLPNLKELALD  379 (455)
T ss_dssp             GTTCTTCCEEECCSSCCC-E--ECTTTTTTCTTCCEEECC
T ss_pred             hcCcccCCEEECCCCccc-c--cChhhccccccccEEECC
Confidence            334556666666543111 0  012233456666666664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.93  E-value=3e-11  Score=120.72  Aligned_cols=183  Identities=15%  Similarity=0.058  Sum_probs=103.5

Q ss_pred             CCcccceecccccc--c-----cchhcccccccceeeeccccCccce---eEec--------------cCcceEEEeeec
Q 043655          216 SFPHLKKLDLDACY--G-----LKQLKVGCRALEDLTLDNCIQLCGL---DIFG--------------TKLERLRVASCF  271 (512)
Q Consensus       216 ~~p~L~~L~L~~~~--~-----l~~l~~~cp~Le~L~l~~c~~l~~~---~v~~--------------~~L~~L~l~~c~  271 (512)
                      .+++|++|+|.++.  .     +...+..+++|+.|+|.+|.. ...   .+..              ++|++|.+.+|.
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            46666666666654  1     222345567777777766642 110   0110              567777776654


Q ss_pred             cccCCCce---EEEeCCCcceEEeeccccCCC------c-cccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcc
Q 043655          272 DAYCDKSW---VKIDASKLKVLNWEYNAITAS------S-SLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHA  341 (512)
Q Consensus       272 ~~~~~~~~---~~i~~p~L~~L~~~~~~~~~~------~-~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l  341 (512)
                      ........   .....++|++|.+.++.+...      . .+..+++|+.++++.+...+.    ....+...+..+++|
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~----g~~~l~~~l~~~~~L  246 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL----GSSALAIALKSWPNL  246 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH----HHHHHHHHGGGCTTC
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH----HHHHHHHHHccCCCc
Confidence            32111110   111456888888887765421      1 466788888888876643211    123455677888999


Q ss_pred             cEeeecchhhhhhccccccccc--ccccccceEEEEeeccC-CcHHHHHHHH-hhCCCCcEEEEEe
Q 043655          342 RSLTLESPCIEILSNRNYFTNL--HTFTNLKSLELHTGFNK-HNVQGLACLF-RSSPSIHTLILKI  403 (512)
Q Consensus       342 ~~L~l~~~~~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~-~~~~~l~~~L-~~cp~Le~L~l~~  403 (512)
                      +.|+|+.+.+...........+  ..+++|++|+|..+.-. .....++..+ .++|+|++|++..
T Consensus       247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~  312 (386)
T 2ca6_A          247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG  312 (386)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence            9999987764332111111122  23788999999764222 1123455555 6789999998864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.92  E-value=1.6e-09  Score=108.38  Aligned_cols=234  Identities=17%  Similarity=0.162  Sum_probs=129.1

Q ss_pred             cCCceeEEEeccCCCCCCCc-ceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          138 HNVEELDIEVATDDYFNLPR-CVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      +.++.|++....  ...++. .+..+++|++|+|++|... .+++.  ....+++|++|+|+++.+..-..  .++  ..
T Consensus        69 ~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~~~l~~L~~L~L~~n~l~~l~~--~~~--~~  139 (390)
T 3o6n_A           69 RQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPH--VFQNVPLLTVLVLERNDLSSLPR--GIF--HN  139 (390)
T ss_dssp             CCCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCC-CCCTT--TTTTCTTCCEEECCSSCCCCCCT--TTT--TT
T ss_pred             ccCcEEECCCCc--ccccChhhccCCCCcCEEECCCCCCC-cCCHH--HhcCCCCCCEEECCCCccCcCCH--HHh--cC
Confidence            456666554221  122222 2334666777777664211 12221  12356667777776665553211  111  24


Q ss_pred             Ccccceecccccc--cc-chhcccccccceeeeccccCccceeEe--------------------ccCcceEEEeeeccc
Q 043655          217 FPHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCIQLCGLDIF--------------------GTKLERLRVASCFDA  273 (512)
Q Consensus       217 ~p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l~~~~v~--------------------~~~L~~L~l~~c~~~  273 (512)
                      +++|++|+|.++.  .+ ...+..+++|+.|++.++.. ..+.+.                    .++|+.|.+.++...
T Consensus       140 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~  218 (390)
T 3o6n_A          140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN  218 (390)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCC
T ss_pred             CCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-CccccccccccceeecccccccccCCCCcceEEECCCCeee
Confidence            6667777766654  11 12244566666666666542 111111                    134555555554321


Q ss_pred             cCCCceEE-EeCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhh
Q 043655          274 YCDKSWVK-IDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIE  352 (512)
Q Consensus       274 ~~~~~~~~-i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~  352 (512)
                           .+. ...++|+.|.+.++.+.....+.++++|++++++.+...+..        ...+..+++|+.|+++.+.+.
T Consensus       219 -----~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~  285 (390)
T 3o6n_A          219 -----VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM--------YHPFVKMQRLERLYISNNRLV  285 (390)
T ss_dssp             -----EEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE--------SGGGTTCSSCCEEECCSSCCC
T ss_pred             -----eccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcC--------hhHccccccCCEEECCCCcCc
Confidence                 111 124678888888887766666778889999888766443221        124667888999999887654


Q ss_pred             hhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          353 ILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       353 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      .+..     ....+++|++|+|..+.-.    .++..+..+|+|++|++..
T Consensus       286 ~~~~-----~~~~l~~L~~L~L~~n~l~----~~~~~~~~l~~L~~L~L~~  327 (390)
T 3o6n_A          286 ALNL-----YGQPIPTLKVLDLSHNHLL----HVERNQPQFDRLENLYLDH  327 (390)
T ss_dssp             EEEC-----SSSCCTTCCEEECCSSCCC----CCGGGHHHHTTCSEEECCS
T ss_pred             ccCc-----ccCCCCCCCEEECCCCcce----ecCccccccCcCCEEECCC
Confidence            4321     3346789999998764222    2222345679999998864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.90  E-value=1.7e-09  Score=114.44  Aligned_cols=212  Identities=17%  Similarity=0.161  Sum_probs=106.0

Q ss_pred             ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--cc-chhccc
Q 043655          161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GL-KQLKVG  237 (512)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l-~~l~~~  237 (512)
                      .+++|++|+|++|.. ..+++.  ....+++|++|+|+++.+..-..  .++  ..+++|+.|+|.++.  ++ ...+..
T Consensus        97 ~l~~L~~L~L~~n~l-~~~~~~--~~~~l~~L~~L~L~~n~l~~l~~--~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~  169 (597)
T 3oja_B           97 YAHTIQKLYMGFNAI-RYLPPH--VFQNVPLLTVLVLERNDLSSLPR--GIF--HNTPKLTTLSMSNNNLERIEDDTFQA  169 (597)
T ss_dssp             TCTTCCEEECCSSCC-CCCCTT--TTTTCTTCCEEECCSSCCCCCCT--TTT--TTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred             CCCCCCEEECCCCcC-CCCCHH--HHcCCCCCCEEEeeCCCCCCCCH--HHh--ccCCCCCEEEeeCCcCCCCChhhhhc
Confidence            455666666665321 112221  12345666666666555543111  011  245666666665553  11 122344


Q ss_pred             ccccceeeeccccCccceeEe--------------------ccCcceEEEeeeccccCCCceEEE-eCCCcceEEeeccc
Q 043655          238 CRALEDLTLDNCIQLCGLDIF--------------------GTKLERLRVASCFDAYCDKSWVKI-DASKLKVLNWEYNA  296 (512)
Q Consensus       238 cp~Le~L~l~~c~~l~~~~v~--------------------~~~L~~L~l~~c~~~~~~~~~~~i-~~p~L~~L~~~~~~  296 (512)
                      +++|+.|++.+|.. ..+.+.                    .++|+.|.+.++...     .+.. ..++|+.|.++++.
T Consensus       170 l~~L~~L~L~~N~l-~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~-----~~~~~~~~~L~~L~L~~n~  243 (597)
T 3oja_B          170 TTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-----VVRGPVNVELTILKLQHNN  243 (597)
T ss_dssp             CTTCCEEECTTSCC-SBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC-----EEECSCCSCCCEEECCSSC
T ss_pred             CCcCcEEECcCCCC-CCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccc-----ccccccCCCCCEEECCCCC
Confidence            55566666655531 111111                    134555555544221     1111 23577888887777


Q ss_pred             cCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEe
Q 043655          297 ITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHT  376 (512)
Q Consensus       297 ~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  376 (512)
                      +.....+.++++|+.++++.+...+..        ...+..+++|+.|+++.+.+..+..     ....+++|+.|+|..
T Consensus       244 l~~~~~l~~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~L~~L~Ls~  310 (597)
T 3oja_B          244 LTDTAWLLNYPGLVEVDLSYNELEKIM--------YHPFVKMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLSH  310 (597)
T ss_dssp             CCCCGGGGGCTTCSEEECCSSCCCEEE--------SGGGTTCSSCCEEECTTSCCCEEEC-----SSSCCTTCCEEECCS
T ss_pred             CCCChhhccCCCCCEEECCCCccCCCC--------HHHhcCccCCCEEECCCCCCCCCCc-----ccccCCCCcEEECCC
Confidence            666566777888888888765433221        1235667778888887765433221     223466777777765


Q ss_pred             eccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655          377 GFNKHNVQGLACLFRSSPSIHTLILK  402 (512)
Q Consensus       377 ~~~~~~~~~l~~~L~~cp~Le~L~l~  402 (512)
                      +...    .++..+..+|+|+.|++.
T Consensus       311 N~l~----~i~~~~~~l~~L~~L~L~  332 (597)
T 3oja_B          311 NHLL----HVERNQPQFDRLENLYLD  332 (597)
T ss_dssp             SCCC----CCGGGHHHHTTCSEEECC
T ss_pred             CCCC----ccCcccccCCCCCEEECC
Confidence            3221    122223455666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.90  E-value=4.2e-11  Score=122.58  Aligned_cols=255  Identities=17%  Similarity=0.145  Sum_probs=155.0

Q ss_pred             CCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccC---CCccccccCcccceEEeeeEEeeCccchhhhhcCC
Q 043655          139 NVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLP---PSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDS  215 (512)
Q Consensus       139 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~---~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~  215 (512)
                      .+++|++....-....+...+..+++|++|+|++|.  +...   ........+++|++|+|+++.+.+. +...+..  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~-~~~~l~~--   78 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG--LTEARCKDISSALRVNPALAELNLRSNELGDV-GVHCVLQ--   78 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC--CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH-HHHHHHH--
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCC--CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChH-HHHHHHH--
Confidence            456666653321111111113358899999999853  2210   0001133579999999999887652 2222221  


Q ss_pred             CCc----ccceecccccc-------ccchhcccccccceeeeccccCccceeEe---------ccCcceEEEeeeccccC
Q 043655          216 SFP----HLKKLDLDACY-------GLKQLKVGCRALEDLTLDNCIQLCGLDIF---------GTKLERLRVASCFDAYC  275 (512)
Q Consensus       216 ~~p----~L~~L~L~~~~-------~l~~l~~~cp~Le~L~l~~c~~l~~~~v~---------~~~L~~L~l~~c~~~~~  275 (512)
                      .++    +|++|+|.+|.       .+...+..+++|++|++.+|. +....+.         .++|++|.+.+|.....
T Consensus        79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  157 (461)
T 1z7x_W           79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA  157 (461)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence            233    79999999986       124456789999999999986 3221111         24799999998854322


Q ss_pred             CCceE---EEeCCCcceEEeeccccCCC--cccc-----CcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEee
Q 043655          276 DKSWV---KIDASKLKVLNWEYNAITAS--SSLE-----NLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLT  345 (512)
Q Consensus       276 ~~~~~---~i~~p~L~~L~~~~~~~~~~--~~l~-----~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~  345 (512)
                      ....+   ....++|++|.++++.+...  ..+.     ..++|+.++++.+...+..    ...+...+..+++++.|+
T Consensus       158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~----~~~l~~~l~~~~~L~~L~  233 (461)
T 1z7x_W          158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN----CRDLCGIVASKASLRELA  233 (461)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH----HHHHHHHHHHCTTCCEEE
T ss_pred             HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH----HHHHHHHHHhCCCccEEe
Confidence            11111   11358999999998765322  1111     3568999999877543321    234566778899999999


Q ss_pred             ecchhhhhhcccccc-cccccccccceEEEEeeccC-CcHHHHHHHHhhCCCCcEEEEEe
Q 043655          346 LESPCIEILSNRNYF-TNLHTFTNLKSLELHTGFNK-HNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       346 l~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~-~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      ++.+.+......... .....+++|++|+|..+.-. .....+...+..+|+|++|++..
T Consensus       234 Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  293 (461)
T 1z7x_W          234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG  293 (461)
T ss_dssp             CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             ccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence            998754332211100 12224789999999764221 22334777888999999999864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.89  E-value=2.9e-09  Score=104.88  Aligned_cols=207  Identities=18%  Similarity=0.105  Sum_probs=90.9

Q ss_pred             eccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccch--hc
Q 043655          160 ITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQ--LK  235 (512)
Q Consensus       160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~--l~  235 (512)
                      ..+++|++|+|++|... .+++..  ...+++|++|+|+++.+.+-..  ..+  ..+++|++|+|.++.  .+..  .+
T Consensus        73 ~~l~~L~~L~L~~n~l~-~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~--~~l~~L~~L~L~~n~l~~l~~~~~~  145 (353)
T 2z80_A           73 QRCVNLQALVLTSNGIN-TIEEDS--FSSLGSLEHLDLSYNYLSNLSS--SWF--KPLSSLTFLNLLGNPYKTLGETSLF  145 (353)
T ss_dssp             TTCTTCCEEECTTSCCC-EECTTT--TTTCTTCCEEECCSSCCSSCCH--HHH--TTCTTCSEEECTTCCCSSSCSSCSC
T ss_pred             ccCCCCCEEECCCCccC-ccCHhh--cCCCCCCCEEECCCCcCCcCCH--hHh--CCCccCCEEECCCCCCcccCchhhh
Confidence            34566666666653211 122211  2345666666666665543211  111  245666666666553  2222  34


Q ss_pred             ccccccceeeeccccCccceeEe----ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccc
Q 043655          236 VGCRALEDLTLDNCIQLCGLDIF----GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASL  309 (512)
Q Consensus       236 ~~cp~Le~L~l~~c~~l~~~~v~----~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L  309 (512)
                      ..+++|+.|++.+|..+..+...    .++|+.|.+.++......... .-..++|++|.++++.+...  ..+..+++|
T Consensus       146 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  224 (353)
T 2z80_A          146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS-LKSIQNVSHLILHMKQHILLLEIFVDVTSSV  224 (353)
T ss_dssp             TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSCSTTHHHHHHHHTTTE
T ss_pred             ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH-HhccccCCeecCCCCccccchhhhhhhcccc
Confidence            45666666666665433322111    145556666554321110000 00123444444444332111  011223444


Q ss_pred             eeeEEeeEEcccc-----------------------hhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccc
Q 043655          310 HEASVGFILLHED-----------------------LTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTF  366 (512)
Q Consensus       310 ~~l~l~~~~~~~~-----------------------~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~  366 (512)
                      +.++++.+...+.                       ........+...+..+++|+.|+++.+.+..+..    .....+
T Consensus       225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~----~~~~~l  300 (353)
T 2z80_A          225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD----GIFDRL  300 (353)
T ss_dssp             EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT----TTTTTC
T ss_pred             cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH----HHHhcC
Confidence            4444443322110                       0001122344556677777777777665442221    122456


Q ss_pred             cccceEEEEeec
Q 043655          367 TNLKSLELHTGF  378 (512)
Q Consensus       367 ~~L~~L~L~~~~  378 (512)
                      ++|++|+|..+.
T Consensus       301 ~~L~~L~L~~N~  312 (353)
T 2z80_A          301 TSLQKIWLHTNP  312 (353)
T ss_dssp             TTCCEEECCSSC
T ss_pred             CCCCEEEeeCCC
Confidence            677777776543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.88  E-value=6.2e-10  Score=107.97  Aligned_cols=244  Identities=15%  Similarity=0.091  Sum_probs=156.5

Q ss_pred             hhhHHHHHHHh--cCCceeEEEeccCCCCCCC-cceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEee
Q 043655          127 CLNGLIRRAIR--HNVEELDIEVATDDYFNLP-RCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILF  203 (512)
Q Consensus       127 ~~~~wi~~~~~--~~v~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  203 (512)
                      .+...+.....  .++++|++....  ...++ ..+..+++|++|+|++|... ..++    ...+++|++|+|+++.+.
T Consensus        21 ~l~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~----~~~l~~L~~L~Ls~n~l~   93 (317)
T 3o53_A           21 SLKQALASLRQSAWNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLY-ETLD----LESLSTLRTLDLNNNYVQ   93 (317)
T ss_dssp             THHHHHHHHHTTGGGCSEEECTTSC--CCCCCHHHHTTCTTCCEEECTTSCCE-EEEE----ETTCTTCCEEECCSSEEE
T ss_pred             chhhhHHHHhccCCCCCEEECcCCc--cCcCCHHHhhCCCcCCEEECCCCcCC-cchh----hhhcCCCCEEECcCCccc
Confidence            34444444433  467777765332  22344 34456889999999985321 1222    346899999999998876


Q ss_pred             CccchhhhhcCCCCcccceeccccccccchhcccccccceeeeccccCccc--eeEe-ccCcceEEEeeeccccCCCceE
Q 043655          204 NQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCG--LDIF-GTKLERLRVASCFDAYCDKSWV  280 (512)
Q Consensus       204 ~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l~~~cp~Le~L~l~~c~~l~~--~~v~-~~~L~~L~l~~c~~~~~~~~~~  280 (512)
                      +-.         .+++|+.|++.++.--......+++|+.|++.++.....  ..+. .++|+.|.+.++.........+
T Consensus        94 ~l~---------~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  164 (317)
T 3o53_A           94 ELL---------VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL  164 (317)
T ss_dssp             EEE---------ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred             ccc---------CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence            532         358999999988762222233578899999988863221  1222 2788888887764321111111


Q ss_pred             EEeCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccc
Q 043655          281 KIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYF  360 (512)
Q Consensus       281 ~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~  360 (512)
                      .-..++|++|.++++.+........+++|+.++++.+....-         ...+..+++|+.|+++.+.+..+.     
T Consensus       165 ~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l---------~~~~~~l~~L~~L~L~~N~l~~l~-----  230 (317)
T 3o53_A          165 AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM---------GPEFQSAAGVTWISLRNNKLVLIE-----  230 (317)
T ss_dssp             GGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE---------CGGGGGGTTCSEEECTTSCCCEEC-----
T ss_pred             hhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcc---------hhhhcccCcccEEECcCCcccchh-----
Confidence            113588999999988765544455688999999886654321         112567889999999988765432     


Q ss_pred             cccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655          361 TNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK  402 (512)
Q Consensus       361 ~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~  402 (512)
                      .....+++|+.|+|..+.  .....+..++..+|+|+.|.+.
T Consensus       231 ~~~~~l~~L~~L~l~~N~--~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          231 KALRFSQNLEHFDLRGNG--FHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TTCCCCTTCCEEECTTCC--CBHHHHHHHHHTCHHHHHHHHH
T ss_pred             hHhhcCCCCCEEEccCCC--ccCcCHHHHHhccccceEEECC
Confidence            234577899999997542  2234778889999999988775

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.88  E-value=9.2e-10  Score=115.76  Aligned_cols=223  Identities=18%  Similarity=0.132  Sum_probs=112.7

Q ss_pred             CCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--cc
Q 043655          154 NLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GL  231 (512)
Q Consensus       154 ~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l  231 (512)
                      .+|..+..+ +|++|+|.+|... .+|.     ..+++|++|++.++.+......      ..+|+|++|++.++.  .+
T Consensus       296 ~l~~~~~~~-~L~~L~l~~n~~~-~l~~-----~~l~~L~~L~l~~n~~~~~~~~------~~~~~L~~L~l~~n~l~~~  362 (570)
T 2z63_A          296 RVKDFSYNF-GWQHLELVNCKFG-QFPT-----LKLKSLKRLTFTSNKGGNAFSE------VDLPSLEFLDLSRNGLSFK  362 (570)
T ss_dssp             SCCBCCSCC-CCSEEEEESCBCS-SCCB-----CBCSSCCEEEEESCBSCCBCCC------CBCTTCCEEECCSSCCBEE
T ss_pred             hhhhhhccC-CccEEeeccCccc-ccCc-----ccccccCEEeCcCCcccccccc------ccCCCCCEEeCcCCccCcc
Confidence            344444445 6666666653221 2221     2466666666666554332111      356777777776654  11


Q ss_pred             ---chhcccccccceeeeccccCcccee-Ee-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--cccc
Q 043655          232 ---KQLKVGCRALEDLTLDNCIQLCGLD-IF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLE  304 (512)
Q Consensus       232 ---~~l~~~cp~Le~L~l~~c~~l~~~~-v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~  304 (512)
                         ...+..+++|+.|++.+|....... +. .++|++|.+.+|..............++|++|.++++.+...  ..+.
T Consensus       363 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  442 (570)
T 2z63_A          363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN  442 (570)
T ss_dssp             EEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred             ccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh
Confidence               2334456777777777664221111 11 256777776665332111100111346677777766544221  2355


Q ss_pred             CcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHH
Q 043655          305 NLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQ  384 (512)
Q Consensus       305 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  384 (512)
                      ++++|+.++++.+...+.       .+...+..+++|+.|+++.+.+....    +.....+++|++|+|..+.-..   
T Consensus       443 ~l~~L~~L~l~~n~l~~~-------~~p~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~---  508 (570)
T 2z63_A          443 GLSSLEVLKMAGNSFQEN-------FLPDIFTELRNLTFLDLSQCQLEQLS----PTAFNSLSSLQVLNMASNQLKS---  508 (570)
T ss_dssp             TCTTCCEEECTTCEEGGG-------EECSCCTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCSC---
T ss_pred             cCCcCcEEECcCCcCccc-------cchhhhhcccCCCEEECCCCccccCC----hhhhhcccCCCEEeCCCCcCCC---
Confidence            667777777765543210       01123556677777777766533221    1233456777777776532111   


Q ss_pred             HHHHHHhhCCCCcEEEEEe
Q 043655          385 GLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       385 ~l~~~L~~cp~Le~L~l~~  403 (512)
                      .....+..+|+|+.|++..
T Consensus       509 ~~~~~~~~l~~L~~L~l~~  527 (570)
T 2z63_A          509 VPDGIFDRLTSLQKIWLHT  527 (570)
T ss_dssp             CCTTTTTTCTTCCEEECCS
T ss_pred             CCHHHhhcccCCcEEEecC
Confidence            1123456777787777754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.87  E-value=1.1e-09  Score=105.62  Aligned_cols=139  Identities=14%  Similarity=0.116  Sum_probs=81.0

Q ss_pred             ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccc
Q 043655          161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGC  238 (512)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~c  238 (512)
                      .+++|++|++.++  .+...+   ....+++|++|+|+++.+.+-..+      ..+++|+.|+|.++.  ++. -+..+
T Consensus        39 ~l~~L~~L~l~~~--~i~~l~---~~~~l~~L~~L~L~~n~i~~~~~~------~~l~~L~~L~L~~n~l~~~~-~~~~l  106 (308)
T 1h6u_A           39 DLDGITTLSAFGT--GVTTIE---GVQYLNNLIGLELKDNQITDLAPL------KNLTKITELELSGNPLKNVS-AIAGL  106 (308)
T ss_dssp             HHHTCCEEECTTS--CCCCCT---TGGGCTTCCEEECCSSCCCCCGGG------TTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred             HcCCcCEEEeeCC--CccCch---hhhccCCCCEEEccCCcCCCChhH------ccCCCCCEEEccCCcCCCch-hhcCC
Confidence            4788999999984  332222   134689999999999988764332      478999999999886  343 34568


Q ss_pred             cccceeeeccccCcccee-Ee-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEe
Q 043655          239 RALEDLTLDNCIQLCGLD-IF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVG  315 (512)
Q Consensus       239 p~Le~L~l~~c~~l~~~~-v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~  315 (512)
                      ++|+.|++.+|.. ..+. +. .++|+.|.+.++......  . ....++|+.|.++++.+.....+..+++|+.++++
T Consensus       107 ~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~  181 (308)
T 1h6u_A          107 QSIKTLDLTSTQI-TDVTPLAGLSNLQVLYLDLNQITNIS--P-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD  181 (308)
T ss_dssp             TTCCEEECTTSCC-CCCGGGTTCTTCCEEECCSSCCCCCG--G-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             CCCCEEECCCCCC-CCchhhcCCCCCCEEECCCCccCcCc--c-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECC
Confidence            8899999988863 2211 11 145566655554322110  0 01234555555554443333224444444444444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.87  E-value=2.6e-09  Score=109.02  Aligned_cols=235  Identities=16%  Similarity=0.097  Sum_probs=156.3

Q ss_pred             EEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceec
Q 043655          145 IEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLD  224 (512)
Q Consensus       145 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~  224 (512)
                      +.........+|..+.  ++|++|+|++|... .+++..  ...+++|++|+|+++.+.+..  ...+  ..+++|++|+
T Consensus        59 v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~-~~~~~~--~~~l~~L~~L~Ls~n~i~~~~--~~~~--~~l~~L~~L~  129 (452)
T 3zyi_A           59 VVCTRRGLSEVPQGIP--SNTRYLNLMENNIQ-MIQADT--FRHLHHLEVLQLGRNSIRQIE--VGAF--NGLASLNTLE  129 (452)
T ss_dssp             EECCSSCCSSCCSCCC--TTCSEEECCSSCCC-EECTTT--TTTCTTCCEEECCSSCCCEEC--TTTT--TTCTTCCEEE
T ss_pred             EEECCCCcCccCCCCC--CCccEEECcCCcCc-eECHHH--cCCCCCCCEEECCCCccCCcC--hhhc--cCcccCCEEE
Confidence            3333444556676543  68999999985322 233322  357999999999998776521  0112  4789999999


Q ss_pred             ccccc--cc-chhcccccccceeeeccccCccceeE----eccCcceEEEeeeccccCCCceEEEeCCCcceEEeecccc
Q 043655          225 LDACY--GL-KQLKVGCRALEDLTLDNCIQLCGLDI----FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAI  297 (512)
Q Consensus       225 L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l~~~~v----~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~  297 (512)
                      |.++.  .+ ...+..+++|+.|+|.++.. ..+..    ..++|++|.+.+|.....-.....-..++|++|.++++.+
T Consensus       130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             CCSSCCSBCCTTTSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCcCCccChhhhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence            99886  22 23456789999999999863 33221    1279999999886433110000011468999999999888


Q ss_pred             CCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEee
Q 043655          298 TASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTG  377 (512)
Q Consensus       298 ~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  377 (512)
                      .....+..+++|+.++++.+...+..        ...+..+++|+.|++..+.+..+..    .....+++|++|+|..+
T Consensus       209 ~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          209 KDMPNLTPLVGLEELEMSGNHFPEIR--------PGSFHGLSSLKKLWVMNSQVSLIER----NAFDGLASLVELNLAHN  276 (452)
T ss_dssp             SSCCCCTTCTTCCEEECTTSCCSEEC--------GGGGTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSS
T ss_pred             cccccccccccccEEECcCCcCcccC--------cccccCccCCCEEEeCCCcCceECH----HHhcCCCCCCEEECCCC
Confidence            76667888999999999866543221        2347788999999999876544322    24457889999999764


Q ss_pred             ccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655          378 FNKHNVQGLACLFRSSPSIHTLILKII  404 (512)
Q Consensus       378 ~~~~~~~~l~~~L~~cp~Le~L~l~~~  404 (512)
                      .-. .  .....+..+++|+.|+|...
T Consensus       277 ~l~-~--~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          277 NLS-S--LPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             CCS-C--CCTTSSTTCTTCCEEECCSS
T ss_pred             cCC-c--cChHHhccccCCCEEEccCC
Confidence            221 1  11234678999999999754

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.86  E-value=1.5e-09  Score=74.57  Aligned_cols=37  Identities=27%  Similarity=0.402  Sum_probs=33.0

Q ss_pred             CCccCCCChHHHHHHHccCCchhhHHHhhhcHhHHHh
Q 043655           23 IDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSL   59 (512)
Q Consensus        23 ~D~is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~l   59 (512)
                      .+.++.||+|++.+||++|+.+|+++++.|||+|+.+
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~   42 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL   42 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHH
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999975

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.86  E-value=6.1e-10  Score=114.64  Aligned_cols=232  Identities=16%  Similarity=0.086  Sum_probs=150.2

Q ss_pred             CCceeEEEeccCCCCCCC-cceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          139 NVEELDIEVATDDYFNLP-RCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       139 ~v~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      +++.|++....  ...++ ..+..+++|++|+|++|... ..++    ...+++|++|+|+++.+.+-.         ..
T Consensus        35 ~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~----l~~l~~L~~L~Ls~N~l~~l~---------~~   98 (487)
T 3oja_A           35 NVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLY-ETLD----LESLSTLRTLDLNNNYVQELL---------VG   98 (487)
T ss_dssp             GCCEEECCSSC--CCCCCGGGGTTCTTCCEEECTTSCCE-EEEE----CTTCTTCCEEECCSSEEEEEE---------EC
T ss_pred             CccEEEeeCCc--CCCCCHHHHhCCCCCCEEEeeCCCCC-CCcc----cccCCCCCEEEecCCcCCCCC---------CC
Confidence            56677666432  22343 34557889999999985322 1222    346899999999998887532         34


Q ss_pred             cccceeccccccccchhcccccccceeeeccccCccc--eeEe-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeec
Q 043655          218 PHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCG--LDIF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEY  294 (512)
Q Consensus       218 p~L~~L~L~~~~~l~~l~~~cp~Le~L~l~~c~~l~~--~~v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~  294 (512)
                      |+|+.|++.++.--......++.|+.|++.+|.....  ..+. .++|+.|.+.++.........+.-..++|++|++++
T Consensus        99 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A           99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            8899999988762222223568899999988863221  1222 378888888776432111111111358899999998


Q ss_pred             cccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEE
Q 043655          295 NAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLEL  374 (512)
Q Consensus       295 ~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L  374 (512)
                      +.+........+++|+.++++.+...+-.         .-+..+++|+.|+++.+.+..+.     .....+++|+.|+|
T Consensus       179 N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~---------~~~~~l~~L~~L~Ls~N~l~~lp-----~~l~~l~~L~~L~l  244 (487)
T 3oja_A          179 NFIYDVKGQVVFAKLKTLDLSSNKLAFMG---------PEFQSAAGVTWISLRNNKLVLIE-----KALRFSQNLEHFDL  244 (487)
T ss_dssp             SCCCEEECCCCCTTCCEEECCSSCCCEEC---------GGGGGGTTCSEEECTTSCCCEEC-----TTCCCCTTCCEEEC
T ss_pred             CccccccccccCCCCCEEECCCCCCCCCC---------HhHcCCCCccEEEecCCcCcccc-----hhhccCCCCCEEEc
Confidence            87765555557899999998876543211         12567889999999987755322     23456789999988


Q ss_pred             EeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655          375 HTGFNKHNVQGLACLFRSSPSIHTLILK  402 (512)
Q Consensus       375 ~~~~~~~~~~~l~~~L~~cp~Le~L~l~  402 (512)
                      ..+.  .....++.++..+|.|+.|.+.
T Consensus       245 ~~N~--l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          245 RGNG--FHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCC--BCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCC--CcCcchHHHHHhCCCCcEEecc
Confidence            6542  2234677888888888877663

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.86  E-value=2.8e-09  Score=108.38  Aligned_cols=235  Identities=17%  Similarity=0.118  Sum_probs=154.2

Q ss_pred             EEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceec
Q 043655          145 IEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLD  224 (512)
Q Consensus       145 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~  224 (512)
                      +.........+|..+.  ++++.|+|++|... .+++..  ...+++|++|+|+++.+.+-..  ..+  ..+++|++|+
T Consensus        48 v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~-~~~~~~--~~~l~~L~~L~Ls~n~i~~i~~--~~~--~~l~~L~~L~  118 (440)
T 3zyj_A           48 VICVRKNLREVPDGIS--TNTRLLNLHENQIQ-IIKVNS--FKHLRHLEILQLSRNHIRTIEI--GAF--NGLANLNTLE  118 (440)
T ss_dssp             EECCSCCCSSCCSCCC--TTCSEEECCSCCCC-EECTTT--TSSCSSCCEEECCSSCCCEECG--GGG--TTCSSCCEEE
T ss_pred             EEeCCCCcCcCCCCCC--CCCcEEEccCCcCC-eeCHHH--hhCCCCCCEEECCCCcCCccCh--hhc--cCCccCCEEE
Confidence            3333444556776553  68899999985321 233222  3578999999999987764210  112  4789999999


Q ss_pred             ccccc--ccc-hhcccccccceeeeccccCccceeE----eccCcceEEEeeeccccCCCceEEEeCCCcceEEeecccc
Q 043655          225 LDACY--GLK-QLKVGCRALEDLTLDNCIQLCGLDI----FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAI  297 (512)
Q Consensus       225 L~~~~--~l~-~l~~~cp~Le~L~l~~c~~l~~~~v----~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~  297 (512)
                      |.++.  .+. ..+..+++|+.|+|.++.. ..+.-    ..++|+.|.+.+|.....-.....-..++|++|.++++.+
T Consensus       119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCSSCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred             CCCCcCCeeCHhHhhccccCceeeCCCCcc-cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence            99875  332 3456789999999999863 22221    1278999999886432110000011368999999999887


Q ss_pred             CCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEee
Q 043655          298 TASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTG  377 (512)
Q Consensus       298 ~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  377 (512)
                      .....+..+++|+.++++.+...+..        ...+..+++|+.|.+..+.+..+..    .....+++|++|+|..+
T Consensus       198 ~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          198 REIPNLTPLIKLDELDLSGNHLSAIR--------PGSFQGLMHLQKLWMIQSQIQVIER----NAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             SSCCCCTTCSSCCEEECTTSCCCEEC--------TTTTTTCTTCCEEECTTCCCCEECT----TSSTTCTTCCEEECTTS
T ss_pred             ccccccCCCcccCEEECCCCccCccC--------hhhhccCccCCEEECCCCceeEECh----hhhcCCCCCCEEECCCC
Confidence            76667888999999999866432211        2346788999999998876544322    24457789999999754


Q ss_pred             ccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655          378 FNKHNVQGLACLFRSSPSIHTLILKII  404 (512)
Q Consensus       378 ~~~~~~~~l~~~L~~cp~Le~L~l~~~  404 (512)
                      .-..   .....+..+++|+.|+|...
T Consensus       266 ~l~~---~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          266 NLTL---LPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             CCCC---CCTTTTSSCTTCCEEECCSS
T ss_pred             CCCc---cChhHhccccCCCEEEcCCC
Confidence            2211   11234678899999998753

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.85  E-value=4.8e-10  Score=108.14  Aligned_cols=60  Identities=27%  Similarity=0.185  Sum_probs=25.5

Q ss_pred             cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccccccceeeeccc
Q 043655          188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNC  249 (512)
Q Consensus       188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c  249 (512)
                      .+++|++|+|+++.+...+.....+  ..+++|++|+|.++.  .+..-+..+++|+.|++.++
T Consensus        50 ~l~~L~~L~L~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n  111 (306)
T 2z66_A           50 KLTQLTKLSLSSNGLSFKGCCSQSD--FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS  111 (306)
T ss_dssp             TCTTCSEEECCSSCCCEEEEEEHHH--HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS
T ss_pred             ccccCCEEECCCCccCcccCccccc--ccccccCEEECCCCccccChhhcCCCCCCCEEECCCC
Confidence            4555555555554443211000001  134555555555543  22222334555555555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.85  E-value=6.8e-10  Score=117.73  Aligned_cols=235  Identities=16%  Similarity=0.077  Sum_probs=126.3

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      .+++.+++.....  ..+| .+..+++|++|+|.+|.. ..+|.  .   .+++|++|+++++.......+      ..+
T Consensus       285 ~~L~~L~l~~~~~--~~l~-~l~~~~~L~~L~l~~n~l-~~lp~--~---~l~~L~~L~l~~n~~~~~~~~------~~l  349 (606)
T 3vq2_A          285 ANVSAMSLAGVSI--KYLE-DVPKHFKWQSLSIIRCQL-KQFPT--L---DLPFLKSLTLTMNKGSISFKK------VAL  349 (606)
T ss_dssp             TTCSEEEEESCCC--CCCC-CCCTTCCCSEEEEESCCC-SSCCC--C---CCSSCCEEEEESCSSCEECCC------CCC
T ss_pred             CCCCEEEecCccc--hhhh-hccccccCCEEEcccccC-ccccc--C---CCCccceeeccCCcCccchhh------ccC
Confidence            5777777764432  3455 455678888888888533 23331  1   678888888877743322111      367


Q ss_pred             cccceecccccc--cc---chhcccccccceeeeccccCcccee--E-eccCcceEEEeeeccccCCCceEEEeCCCcce
Q 043655          218 PHLKKLDLDACY--GL---KQLKVGCRALEDLTLDNCIQLCGLD--I-FGTKLERLRVASCFDAYCDKSWVKIDASKLKV  289 (512)
Q Consensus       218 p~L~~L~L~~~~--~l---~~l~~~cp~Le~L~l~~c~~l~~~~--v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~  289 (512)
                      |+|+.|++.++.  ++   ...+..++.|+.|++.+|.. ..+.  + ..++|+.|.+.++..............++|++
T Consensus       350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  428 (606)
T 3vq2_A          350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY  428 (606)
T ss_dssp             TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred             CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc-ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence            888888887765  22   34455677888888877752 2221  1 12677777777654322111001113466777


Q ss_pred             EEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccccccc
Q 043655          290 LNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFT  367 (512)
Q Consensus       290 L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~  367 (512)
                      |+++++.+...  ..+.++++|+.++++.+...+..       ....+..+++|+.|+++.+.+.....    .....++
T Consensus       429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~  497 (606)
T 3vq2_A          429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT-------LSNVFANTTNLTFLDLSKCQLEQISW----GVFDTLH  497 (606)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE-------ECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCT
T ss_pred             EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc-------hHHhhccCCCCCEEECCCCcCCccCh----hhhcccc
Confidence            77766654321  23556677777776655432210       11234556667777766654322111    1234556


Q ss_pred             ccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655          368 NLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK  402 (512)
Q Consensus       368 ~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~  402 (512)
                      +|++|+|+.+.-..   ..+..+..+++|+.|++.
T Consensus       498 ~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~l~  529 (606)
T 3vq2_A          498 RLQLLNMSHNNLLF---LDSSHYNQLYSLSTLDCS  529 (606)
T ss_dssp             TCCEEECCSSCCSC---EEGGGTTTCTTCCEEECT
T ss_pred             cCCEEECCCCcCCC---cCHHHccCCCcCCEEECC
Confidence            66666665431111   112334556666666664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.85  E-value=3.9e-09  Score=110.94  Aligned_cols=221  Identities=17%  Similarity=0.083  Sum_probs=141.8

Q ss_pred             CCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccchh
Q 043655          155 LPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQL  234 (512)
Q Consensus       155 lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l  234 (512)
                      .|..+..+++|+.|++.++... .+|..   ...+ +|++|++.++.+..-..       ..+++|++|++.++.....+
T Consensus       274 ~~~~~~~l~~L~~L~l~~~~l~-~l~~~---~~~~-~L~~L~l~~n~~~~l~~-------~~l~~L~~L~l~~n~~~~~~  341 (570)
T 2z63_A          274 IIDLFNCLTNVSSFSLVSVTIE-RVKDF---SYNF-GWQHLELVNCKFGQFPT-------LKLKSLKRLTFTSNKGGNAF  341 (570)
T ss_dssp             STTTTGGGTTCSEEEEESCEEC-SCCBC---CSCC-CCSEEEEESCBCSSCCB-------CBCSSCCEEEEESCBSCCBC
T ss_pred             chhhhcCcCcccEEEecCccch-hhhhh---hccC-CccEEeeccCcccccCc-------ccccccCEEeCcCCcccccc
Confidence            3444456788888888874221 23321   2345 88888888887753211       36889999999887622111


Q ss_pred             -cccccccceeeeccccCccceeE-----eccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC---ccccC
Q 043655          235 -KVGCRALEDLTLDNCIQLCGLDI-----FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS---SSLEN  305 (512)
Q Consensus       235 -~~~cp~Le~L~l~~c~~l~~~~v-----~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~---~~l~~  305 (512)
                       ...+++|+.|++.+|........     ..++|+.|.+.+|.....  .......++|++|.+.++.+...   ..+.+
T Consensus       342 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  419 (570)
T 2z63_A          342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS  419 (570)
T ss_dssp             CCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE--EEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred             ccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc--cccccccCCCCEEEccCCccccccchhhhhc
Confidence             15789999999998863221111     127899999988754211  11123678999999998765433   34678


Q ss_pred             cccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHH
Q 043655          306 LASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQG  385 (512)
Q Consensus       306 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  385 (512)
                      +++|+.++++.+...+.        ....+..+++|+.|++..+.+.....   +.....+++|+.|+|..+.-. +  .
T Consensus       420 l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~---p~~~~~l~~L~~L~l~~n~l~-~--~  485 (570)
T 2z63_A          420 LRNLIYLDISHTHTRVA--------FNGIFNGLSSLEVLKMAGNSFQENFL---PDIFTELRNLTFLDLSQCQLE-Q--L  485 (570)
T ss_dssp             CTTCCEEECTTSCCEEC--------CTTTTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEECTTSCCC-E--E
T ss_pred             CCCCCEEeCcCCccccc--------chhhhhcCCcCcEEECcCCcCccccc---hhhhhcccCCCEEECCCCccc-c--C
Confidence            89999999876643222        12346778999999998876432111   124557889999999754211 1  1


Q ss_pred             HHHHHhhCCCCcEEEEEe
Q 043655          386 LACLFRSSPSIHTLILKI  403 (512)
Q Consensus       386 l~~~L~~cp~Le~L~l~~  403 (512)
                      .+..+..+|+|++|++..
T Consensus       486 ~~~~~~~l~~L~~L~l~~  503 (570)
T 2z63_A          486 SPTAFNSLSSLQVLNMAS  503 (570)
T ss_dssp             CTTTTTTCTTCCEEECCS
T ss_pred             ChhhhhcccCCCEEeCCC
Confidence            134467899999999875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.85  E-value=1.1e-09  Score=119.46  Aligned_cols=60  Identities=13%  Similarity=-0.031  Sum_probs=33.4

Q ss_pred             CCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          338 LSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       338 l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      +++|+.|+++.+.+....    +.....+++|++|+|..+.....  .-...+..+++|++|++..
T Consensus       293 ~~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~--ip~~~l~~l~~L~~L~Ls~  352 (768)
T 3rgz_A          293 CDTLTGLDLSGNHFYGAV----PPFFGSCSLLESLALSSNNFSGE--LPMDTLLKMRGLKVLDLSF  352 (768)
T ss_dssp             CTTCSEEECCSSEEEECC----CGGGGGCTTCCEEECCSSEEEEE--CCHHHHTTCTTCCEEECCS
T ss_pred             cCcCCEEECcCCcCCCcc----chHHhcCCCccEEECCCCcccCc--CCHHHHhcCCCCCEEeCcC
Confidence            366666666655432111    12344667888888765321111  0123467889999998864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.84  E-value=1e-09  Score=112.82  Aligned_cols=240  Identities=15%  Similarity=0.120  Sum_probs=107.8

Q ss_pred             CCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          139 NVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       139 ~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      +++.|++...  ....+|...+ .+++|++|+|++|... .+++.  ....+++|++|+|+++.+.....  ..+  ..+
T Consensus        81 ~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~--~~l  151 (477)
T 2id5_A           81 NLRTLGLRSN--RLKLIPLGVFTGLSNLTKLDISENKIV-ILLDY--MFQDLYNLKSLEVGDNDLVYISH--RAF--SGL  151 (477)
T ss_dssp             TCCEEECCSS--CCCSCCTTSSTTCTTCCEEECTTSCCC-EECTT--TTTTCTTCCEEEECCTTCCEECT--TSS--TTC
T ss_pred             cCCEEECCCC--cCCccCcccccCCCCCCEEECCCCccc-cCChh--HccccccCCEEECCCCccceeCh--hhc--cCC
Confidence            4555554322  2233444333 4566666666664221 11111  12346666666666554432110  001  256


Q ss_pred             cccceecccccc--cc-chhcccccccceeeeccccCccc--eeE-eccCcceEEEeeeccccCCCceEEEeCCCcceEE
Q 043655          218 PHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCIQLCG--LDI-FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLN  291 (512)
Q Consensus       218 p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l~~--~~v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~  291 (512)
                      ++|++|+|.++.  .+ ...+..+++|+.|++.++.....  ..+ ..++|+.|.+.+|........ .....++|++|.
T Consensus       152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~  230 (477)
T 2id5_A          152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP-NCLYGLNLTSLS  230 (477)
T ss_dssp             TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT-TTTTTCCCSEEE
T ss_pred             CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc-ccccCccccEEE
Confidence            666666666654  11 12344566666666666542110  011 125666666665532210000 001123566666


Q ss_pred             eeccccCCCc--cccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccccccccc
Q 043655          292 WEYNAITASS--SLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNL  369 (512)
Q Consensus       292 ~~~~~~~~~~--~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L  369 (512)
                      ++++.+....  .+.++++|+.++++.+......        ...+..+++|+.|++..+.+..+..    ..+..+++|
T Consensus       231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L  298 (477)
T 2id5_A          231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE--------GSMLHELLRLQEIQLVGGQLAVVEP----YAFRGLNYL  298 (477)
T ss_dssp             EESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC--------TTSCTTCTTCCEEECCSSCCSEECT----TTBTTCTTC
T ss_pred             CcCCcccccCHHHhcCccccCeeECCCCcCCccC--------hhhccccccCCEEECCCCccceECH----HHhcCcccC
Confidence            6665543322  2455666666666544322110        1124455666666666554322211    133355666


Q ss_pred             ceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          370 KSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       370 ~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      +.|+|..+.-. .  .....+..+++|+.|++..
T Consensus       299 ~~L~L~~N~l~-~--~~~~~~~~l~~L~~L~l~~  329 (477)
T 2id5_A          299 RVLNVSGNQLT-T--LEESVFHSVGNLETLILDS  329 (477)
T ss_dssp             CEEECCSSCCS-C--CCGGGBSCGGGCCEEECCS
T ss_pred             CEEECCCCcCc-e--eCHhHcCCCcccCEEEccC
Confidence            66666543111 0  0112345566666666643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.84  E-value=5.4e-09  Score=100.83  Aligned_cols=162  Identities=21%  Similarity=0.149  Sum_probs=108.6

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      .++++|++....  ...+| .+..+++|++|+|++|... .+++    ...+++|++|+|+++.+.+...+      ..+
T Consensus        41 ~~L~~L~l~~~~--i~~l~-~~~~l~~L~~L~L~~n~i~-~~~~----~~~l~~L~~L~L~~n~l~~~~~~------~~l  106 (308)
T 1h6u_A           41 DGITTLSAFGTG--VTTIE-GVQYLNNLIGLELKDNQIT-DLAP----LKNLTKITELELSGNPLKNVSAI------AGL  106 (308)
T ss_dssp             HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCC-CCGG----GTTCCSCCEEECCSCCCSCCGGG------TTC
T ss_pred             CCcCEEEeeCCC--ccCch-hhhccCCCCEEEccCCcCC-CChh----HccCCCCCEEEccCCcCCCchhh------cCC
Confidence            577877775332  23344 3557899999999985211 2222    45789999999999988764333      478


Q ss_pred             cccceecccccc--ccchhcccccccceeeeccccCccceeEe-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeec
Q 043655          218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEY  294 (512)
Q Consensus       218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~  294 (512)
                      ++|+.|+|.++.  .+.. +..+++|+.|++.+|.......+. .++|+.|.+.+|.....  .. ....++|+.|.+++
T Consensus       107 ~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          107 QSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TP-LANLSKLTTLKADD  182 (308)
T ss_dssp             TTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCS
T ss_pred             CCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC--hh-hcCCCCCCEEECCC
Confidence            999999999886  4443 567899999999998632211122 27899999988754321  11 12568999999998


Q ss_pred             cccCCCccccCcccceeeEEeeE
Q 043655          295 NAITASSSLENLASLHEASVGFI  317 (512)
Q Consensus       295 ~~~~~~~~l~~~~~L~~l~l~~~  317 (512)
                      +.+.....+..+++|+.++++.+
T Consensus       183 n~l~~~~~l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          183 NKISDISPLASLPNLIEVHLKNN  205 (308)
T ss_dssp             SCCCCCGGGGGCTTCCEEECTTS
T ss_pred             CccCcChhhcCCCCCCEEEccCC
Confidence            87654444556666666666544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.83  E-value=1.3e-09  Score=115.51  Aligned_cols=217  Identities=16%  Similarity=0.097  Sum_probs=147.9

Q ss_pred             eeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccch-hccc
Q 043655          159 VITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQ-LKVG  237 (512)
Q Consensus       159 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~-l~~~  237 (512)
                      +..+++|+.|++.++.. ..++    ....+++|++|+++++.+..   +..+    .+|+|++|++.++..+.. -...
T Consensus       281 ~~~l~~L~~L~l~~~~~-~~l~----~l~~~~~L~~L~l~~n~l~~---lp~~----~l~~L~~L~l~~n~~~~~~~~~~  348 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSI-KYLE----DVPKHFKWQSLSIIRCQLKQ---FPTL----DLPFLKSLTLTMNKGSISFKKVA  348 (606)
T ss_dssp             CGGGTTCSEEEEESCCC-CCCC----CCCTTCCCSEEEEESCCCSS---CCCC----CCSSCCEEEEESCSSCEECCCCC
T ss_pred             cccCCCCCEEEecCccc-hhhh----hccccccCCEEEcccccCcc---cccC----CCCccceeeccCCcCccchhhcc
Confidence            55789999999998532 1232    23468899999999998843   2222    689999999999863332 3447


Q ss_pred             ccccceeeeccccCcccee------EeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC---ccccCccc
Q 043655          238 CRALEDLTLDNCIQLCGLD------IFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS---SSLENLAS  308 (512)
Q Consensus       238 cp~Le~L~l~~c~~l~~~~------v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~---~~l~~~~~  308 (512)
                      +++|+.|++.+|.. ....      ...++|+.|.+.+|......  ......++|+.|.+.++.+...   ..+.++++
T Consensus       349 l~~L~~L~ls~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  425 (606)
T 3vq2_A          349 LPSLSYLDLSRNAL-SFSGCCSYSDLGTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK  425 (606)
T ss_dssp             CTTCCEEECCSSCE-EEEEECCHHHHCCSCCCEEECCSCSEEEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred             CCCCCEEECcCCcc-CCCcchhhhhccCCcccEeECCCCccccch--hhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence            89999999999863 2221      12379999999887532110  1111468999999998876443   35678999


Q ss_pred             ceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHH
Q 043655          309 LHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLAC  388 (512)
Q Consensus       309 L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~  388 (512)
                      |+.++++.+......        ...+..+++|+.|+++.+.+.....   ......+++|+.|+|..+.-..   ..+.
T Consensus       426 L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~l~~---~~~~  491 (606)
T 3vq2_A          426 LLYLDISYTNTKIDF--------DGIFLGLTSLNTLKMAGNSFKDNTL---SNVFANTTNLTFLDLSKCQLEQ---ISWG  491 (606)
T ss_dssp             CCEEECTTSCCEECC--------TTTTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEECTTSCCCE---ECTT
T ss_pred             CCEEECcCCCCCccc--------hhhhcCCCCCCEEECCCCcCCCcch---HHhhccCCCCCEEECCCCcCCc---cChh
Confidence            999999876543221        2346788999999999876543111   1245578899999997642211   1233


Q ss_pred             HHhhCCCCcEEEEEee
Q 043655          389 LFRSSPSIHTLILKII  404 (512)
Q Consensus       389 ~L~~cp~Le~L~l~~~  404 (512)
                      .+..+++|+.|++...
T Consensus       492 ~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          492 VFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             TTTTCTTCCEEECCSS
T ss_pred             hhcccccCCEEECCCC
Confidence            4678999999999754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.82  E-value=3.5e-09  Score=103.25  Aligned_cols=189  Identities=20%  Similarity=0.177  Sum_probs=82.8

Q ss_pred             ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--cc-chhccc
Q 043655          161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GL-KQLKVG  237 (512)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l-~~l~~~  237 (512)
                      .+++|++|+|++|... .+.+..  ...+++|++|+|+++.+..-..       .-+++|++|++.++.  .+ ...+..
T Consensus        74 ~l~~L~~L~L~~n~l~-~~~~~~--~~~l~~L~~L~Ls~n~l~~l~~-------~~~~~L~~L~l~~n~l~~~~~~~~~~  143 (330)
T 1xku_A           74 NLKNLHTLILINNKIS-KISPGA--FAPLVKLERLYLSKNQLKELPE-------KMPKTLQELRVHENEITKVRKSVFNG  143 (330)
T ss_dssp             TCTTCCEEECCSSCCC-CBCTTT--TTTCTTCCEEECCSSCCSBCCS-------SCCTTCCEEECCSSCCCBBCHHHHTT
T ss_pred             cCCCCCEEECCCCcCC-eeCHHH--hcCCCCCCEEECCCCcCCccCh-------hhcccccEEECCCCcccccCHhHhcC
Confidence            4566666666653211 111111  2345666666666555442110       123566666666553  11 122445


Q ss_pred             ccccceeeeccccCcc-ce---eEe-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccce
Q 043655          238 CRALEDLTLDNCIQLC-GL---DIF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLH  310 (512)
Q Consensus       238 cp~Le~L~l~~c~~l~-~~---~v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~  310 (512)
                      +++|+.|++.++.... ..   .+. .++|+.|.+.++...... ..   ..++|++|.++++.+...  ..+.++++|+
T Consensus       144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  219 (330)
T 1xku_A          144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-QG---LPPSLTELHLDGNKITKVDAASLKGLNNLA  219 (330)
T ss_dssp             CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-SS---CCTTCSEEECTTSCCCEECTGGGTTCTTCC
T ss_pred             CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC-cc---ccccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence            6666666666654211 00   011 145666666554322111 00   015566666655543221  2344555555


Q ss_pred             eeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEe
Q 043655          311 EASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHT  376 (512)
Q Consensus       311 ~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  376 (512)
                      .++++.+...+..        ...+..+++|+.|+++.+.+..+.     .....+++|++|+|..
T Consensus       220 ~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~lp-----~~l~~l~~L~~L~l~~  272 (330)
T 1xku_A          220 KLGLSFNSISAVD--------NGSLANTPHLRELHLNNNKLVKVP-----GGLADHKYIQVVYLHN  272 (330)
T ss_dssp             EEECCSSCCCEEC--------TTTGGGSTTCCEEECCSSCCSSCC-----TTTTTCSSCCEEECCS
T ss_pred             EEECCCCcCceeC--------hhhccCCCCCCEEECCCCcCccCC-----hhhccCCCcCEEECCC
Confidence            5555543321110        012344555555555555433211     1223445555555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.82  E-value=3.2e-09  Score=106.13  Aligned_cols=282  Identities=15%  Similarity=0.127  Sum_probs=164.2

Q ss_pred             cCCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      .+++.+++....  ...+|..++ .+++|++|+|+++.. ..+++.  ....+++|++|+|+++.+.+...  ..+  ..
T Consensus        45 ~~l~~l~l~~~~--l~~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~--~~  115 (390)
T 3o6n_A           45 NNQKIVTFKNST--MRKLPAALLDSFRQVELLNLNDLQI-EEIDTY--AFAYAHTIQKLYMGFNAIRYLPP--HVF--QN  115 (390)
T ss_dssp             CCCSEEEEESCE--ESEECTHHHHHCCCCSEEECTTSCC-CEECTT--TTTTCTTCCEEECCSSCCCCCCT--TTT--TT
T ss_pred             CCceEEEecCCc--hhhCChhHhcccccCcEEECCCCcc-cccChh--hccCCCCcCEEECCCCCCCcCCH--HHh--cC
Confidence            567777776332  345676655 589999999998532 133332  23579999999999988765311  112  47


Q ss_pred             Ccccceecccccc--ccc-hhcccccccceeeeccccCcccee---Ee-ccCcceEEEeeeccccCCCce------EE--
Q 043655          217 FPHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNCIQLCGLD---IF-GTKLERLRVASCFDAYCDKSW------VK--  281 (512)
Q Consensus       217 ~p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~~l~~~~---v~-~~~L~~L~l~~c~~~~~~~~~------~~--  281 (512)
                      +++|++|+|.++.  .+. .++..+++|+.|++.++.. ..+.   +. .++|+.|.+.++.........      +.  
T Consensus       116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~  194 (390)
T 3o6n_A          116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS  194 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECC
T ss_pred             CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc-CccChhhccCCCCCCEEECCCCcCCccccccccccceeecc
Confidence            8999999999886  332 3356789999999999863 2221   22 278999999887543211110      00  


Q ss_pred             -------EeCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhh
Q 043655          282 -------IDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEIL  354 (512)
Q Consensus       282 -------i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~  354 (512)
                             -..++|+.|.++++.+... .....++|+.++++.+...+.          ..+..+++|+.|+++.+.+...
T Consensus       195 ~n~l~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~Ls~n~l~~~  263 (390)
T 3o6n_A          195 YNLLSTLAIPIAVEELDASHNSINVV-RGPVNVELTILKLQHNNLTDT----------AWLLNYPGLVEVDLSYNELEKI  263 (390)
T ss_dssp             SSCCSEEECCSSCSEEECCSSCCCEE-ECCCCSSCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCCCEE
T ss_pred             cccccccCCCCcceEEECCCCeeeec-cccccccccEEECCCCCCccc----------HHHcCCCCccEEECCCCcCCCc
Confidence                   1123444455444433211 122345667766665543221          2467788888888887764332


Q ss_pred             cccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEeecccchhhhcccccccCccCccchhhhhccc
Q 043655          355 SNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEEEQYWQSQS  434 (512)
Q Consensus       355 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  434 (512)
                      ..    .....+++|++|+|..+.-.    .+......+|+|+.|++....-..                .+..      
T Consensus       264 ~~----~~~~~l~~L~~L~L~~n~l~----~~~~~~~~l~~L~~L~L~~n~l~~----------------~~~~------  313 (390)
T 3o6n_A          264 MY----HPFVKMQRLERLYISNNRLV----ALNLYGQPIPTLKVLDLSHNHLLH----------------VERN------  313 (390)
T ss_dssp             ES----GGGTTCSSCCEEECCSSCCC----EEECSSSCCTTCCEEECCSSCCCC----------------CGGG------
T ss_pred             Ch----hHccccccCCEEECCCCcCc----ccCcccCCCCCCCEEECCCCccee----------------cCcc------
Confidence            11    23446778888888754211    112223567888888886421100                0000      


Q ss_pred             cCchhhhcCccEEEEeeeccchhHHHHHHHHHhcCccccceEEEec
Q 043655          435 QTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCTG  480 (512)
Q Consensus       435 ~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~L~~m~i~~~  480 (512)
                         -..+.+|+++.+.+-.-..-.       +...+.|+.+.+...
T Consensus       314 ---~~~l~~L~~L~L~~N~i~~~~-------~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          314 ---QPQFDRLENLYLDHNSIVTLK-------LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             ---HHHHTTCSEEECCSSCCCCCC-------CCTTCCCSEEECCSS
T ss_pred             ---ccccCcCCEEECCCCccceeC-------chhhccCCEEEcCCC
Confidence               012577888887753322211       456678888777653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.81  E-value=5.4e-09  Score=101.10  Aligned_cols=125  Identities=15%  Similarity=0.145  Sum_probs=75.2

Q ss_pred             CCceeEEEeccC-CCCCCCcceeccCCccEEEEec-ccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          139 NVEELDIEVATD-DYFNLPRCVITSDSLRVFKLRS-RYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       139 ~v~~L~l~~~~~-~~~~lp~~l~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      .|++|++....- +...+|..+..+++|++|+|++ +.....+|.   ....+++|++|+|+++.+.+.  +...+  ..
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~--~p~~~--~~  123 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP---AIAKLTQLHYLYITHTNVSGA--IPDFL--SQ  123 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG---GGGGCTTCSEEEEEEECCEEE--CCGGG--GG
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh---hHhcCCCCCEEECcCCeeCCc--CCHHH--hC
Confidence            455666653321 1125677777888999999984 322112322   134688999999998887632  11111  35


Q ss_pred             Ccccceecccccc---ccchhcccccccceeeeccccCcccee--Ee-c-cCcceEEEeee
Q 043655          217 FPHLKKLDLDACY---GLKQLKVGCRALEDLTLDNCIQLCGLD--IF-G-TKLERLRVASC  270 (512)
Q Consensus       217 ~p~L~~L~L~~~~---~l~~l~~~cp~Le~L~l~~c~~l~~~~--v~-~-~~L~~L~l~~c  270 (512)
                      +++|++|+|.++.   .+...+..+++|+.|++.++.....+.  +. . ++|+.|.+.++
T Consensus       124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred             CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence            7888999888875   244455678888888888876321111  11 1 26667766664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.81  E-value=1.8e-10  Score=112.58  Aligned_cols=129  Identities=19%  Similarity=0.180  Sum_probs=84.8

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      .++++|++..+.-....+|..+..+++|++|+|++|...-..+.   ....+++|++|+|++|....+.++..++  ..|
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~---~l~~~~~L~~L~L~~~~~l~~~~l~~~~--~~~  167 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN---TLAKNSNLVRLNLSGCSGFSEFALQTLL--SSC  167 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH---HHTTCTTCSEEECTTCBSCCHHHHHHHH--HHC
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH---HHhcCCCCCEEECCCCCCCCHHHHHHHH--hcC
Confidence            67888887643211112444455789999999998532111111   1235999999999998433333344444  379


Q ss_pred             cccceeccccc-c----ccchhccccc-ccceeeecccc-CccceeE-----eccCcceEEEeeec
Q 043655          218 PHLKKLDLDAC-Y----GLKQLKVGCR-ALEDLTLDNCI-QLCGLDI-----FGTKLERLRVASCF  271 (512)
Q Consensus       218 p~L~~L~L~~~-~----~l~~l~~~cp-~Le~L~l~~c~-~l~~~~v-----~~~~L~~L~l~~c~  271 (512)
                      |+|++|++.+| .    ++..++..+| +|+.|++.+|. .+.+..+     ..++|++|.+.+|.
T Consensus       168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence            99999999999 3    2456677899 99999999996 3432211     23677777777765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.81  E-value=1.2e-08  Score=106.75  Aligned_cols=235  Identities=16%  Similarity=0.109  Sum_probs=146.8

Q ss_pred             CCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc-
Q 043655          151 DYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY-  229 (512)
Q Consensus       151 ~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~-  229 (512)
                      ....+|..++  ++|++|+|++|... .+++..  ...+++|++|+|+++.+.+...  ..+  ..+++|++|+|.++. 
T Consensus        16 ~l~~ip~~~~--~~L~~L~Ls~n~l~-~~~~~~--~~~l~~L~~L~Ls~n~i~~~~~--~~~--~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A           16 SFTSIPSGLT--AAMKSLDLSFNKIT-YIGHGD--LRACANLQVLILKSSRINTIEG--DAF--YSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             CCSSCCSCCC--TTCCEEECCSSCCC-EECSST--TSSCTTCCEEECTTSCCCEECT--TTT--TTCTTCCEEECTTSCC
T ss_pred             ccccccccCC--CCccEEECcCCccC-ccChhh--hhcCCcccEEECCCCCcCccCh--hhc--cccccCCEEECCCCcc
Confidence            3456666553  68999999985322 232222  3568899999999887765211  112  468899999998885 


Q ss_pred             -cc-chhcccccccceeeeccccCcccee----Ee-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCC--C
Q 043655          230 -GL-KQLKVGCRALEDLTLDNCIQLCGLD----IF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITA--S  300 (512)
Q Consensus       230 -~l-~~l~~~cp~Le~L~l~~c~~l~~~~----v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~--~  300 (512)
                       ++ ...+..+++|++|++.+|.. ..+.    +. .++|++|.+.++..............++|++|.+.++.+..  .
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGNPY-QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             CccCHHHhccCCCCcEEECCCCcc-cccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence             22 23356789999999998853 2211    11 27899999988752110000001135789999998876543  2


Q ss_pred             ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeecc-
Q 043655          301 SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFN-  379 (512)
Q Consensus       301 ~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-  379 (512)
                      ..++.+++|++++++......        ....++..+++++.|+++...+....... ......+++|++|.+..... 
T Consensus       166 ~~l~~l~~L~~L~l~~n~~~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~L~~L~l~~n~l~  236 (549)
T 2z81_A          166 QSLKSIRDIHHLTLHLSESAF--------LLEIFADILSSVRYLELRDTNLARFQFSP-LPVDEVSSPMKKLAFRGSVLT  236 (549)
T ss_dssp             TTTTTCSEEEEEEEECSBSTT--------HHHHHHHSTTTBSEEEEESCBCTTCCCCC-CSSCCCCCCCCEEEEESCEEE
T ss_pred             hhhhccccCceEecccCcccc--------cchhhHhhcccccEEEccCCccccccccc-cchhhhhhcccceeccccccc
Confidence            456788899999887654311        11234567899999999987654432111 11233577899999976422 


Q ss_pred             CCcHHHHHHHHhhCCCCcEEEEEee
Q 043655          380 KHNVQGLACLFRSSPSIHTLILKII  404 (512)
Q Consensus       380 ~~~~~~l~~~L~~cp~Le~L~l~~~  404 (512)
                      ......+...++.+++|+.|.+...
T Consensus       237 ~~~~~~l~~~~~~~~~L~~l~l~~~  261 (549)
T 2z81_A          237 DESFNELLKLLRYILELSEVEFDDC  261 (549)
T ss_dssp             HHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred             hhHHHHHHHHhhhhccccccccccc
Confidence            2233455666778888888888643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.80  E-value=9.7e-09  Score=104.74  Aligned_cols=138  Identities=18%  Similarity=0.119  Sum_probs=65.4

Q ss_pred             cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccccccceeeeccccCccceeEec-cCcce
Q 043655          188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIFG-TKLER  264 (512)
Q Consensus       188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~-~~L~~  264 (512)
                      .+++|++|+|+++.+.+-+ +      ..+++|+.|++.++.  ++.  +..+++|++|++.+|..+..+.+.. ++|+.
T Consensus       104 ~l~~L~~L~L~~N~l~~l~-~------~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~  174 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTKLD-V------SQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTT  174 (457)
T ss_dssp             TCTTCCEEECCSSCCSCCC-C------TTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCE
T ss_pred             CCCcCCEEECCCCcCCeec-C------CCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCE
Confidence            3555555555555443321 1      245555555555543  221  3345555555555554443332222 45555


Q ss_pred             EEEeeeccccCCCceEEE-eCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccE
Q 043655          265 LRVASCFDAYCDKSWVKI-DASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARS  343 (512)
Q Consensus       265 L~l~~c~~~~~~~~~~~i-~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~  343 (512)
                      |.+.++....     +.+ ..++|+.|.++++.+... .++.+++|+.++++.+...+         +.  +..+++++.
T Consensus       175 L~ls~n~l~~-----l~l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~---------ip--~~~l~~L~~  237 (457)
T 3bz5_A          175 LDCSFNKITE-----LDVSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTE---------ID--VTPLTQLTY  237 (457)
T ss_dssp             EECCSSCCCC-----CCCTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSC---------CC--CTTCTTCSE
T ss_pred             EECCCCccce-----eccccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccc---------cC--ccccCCCCE
Confidence            5555543221     111 345566666665554332 35556666666665443221         01  445566666


Q ss_pred             eeecchhh
Q 043655          344 LTLESPCI  351 (512)
Q Consensus       344 L~l~~~~~  351 (512)
                      |+++.+.+
T Consensus       238 L~l~~N~l  245 (457)
T 3bz5_A          238 FDCSVNPL  245 (457)
T ss_dssp             EECCSSCC
T ss_pred             EEeeCCcC
Confidence            66665543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.78  E-value=2e-08  Score=103.12  Aligned_cols=221  Identities=16%  Similarity=0.105  Sum_probs=106.4

Q ss_pred             eeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--c-cchhc
Q 043655          159 VITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--G-LKQLK  235 (512)
Q Consensus       159 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~-l~~l~  235 (512)
                      +..+++|++|+|++|... .+.+..  ...+++|++|+|+++.+..-..  ..+  ..+++|++|+|.++.  . ....+
T Consensus        52 ~~~l~~L~~L~L~~n~i~-~~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~--~~l~~L~~L~Ls~n~i~~~~~~~~  124 (477)
T 2id5_A           52 FASFPHLEELELNENIVS-AVEPGA--FNNLFNLRTLGLRSNRLKLIPL--GVF--TGLSNLTKLDISENKIVILLDYMF  124 (477)
T ss_dssp             TTTCTTCCEEECTTSCCC-EECTTT--TTTCTTCCEEECCSSCCCSCCT--TSS--TTCTTCCEEECTTSCCCEECTTTT
T ss_pred             ccCCCCCCEEECCCCccC-EeChhh--hhCCccCCEEECCCCcCCccCc--ccc--cCCCCCCEEECCCCccccCChhHc
Confidence            335667777777664211 122211  2356677777776665543210  011  256777777776664  1 12334


Q ss_pred             ccccccceeeeccccCcccee---Ee-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccc
Q 043655          236 VGCRALEDLTLDNCIQLCGLD---IF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASL  309 (512)
Q Consensus       236 ~~cp~Le~L~l~~c~~l~~~~---v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L  309 (512)
                      ..+++|+.|++.++.. ..+.   +. .++|+.|.+.+|...... .......++|+.|.+.++.+...  ..+..+++|
T Consensus       125 ~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L  202 (477)
T 2id5_A          125 QDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL  202 (477)
T ss_dssp             TTCTTCCEEEECCTTC-CEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTC
T ss_pred             cccccCCEEECCCCcc-ceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChhhcccCccc
Confidence            5667777777766542 1111   11 256777777665332110 00011346677776666544221  235566667


Q ss_pred             eeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHH
Q 043655          310 HEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACL  389 (512)
Q Consensus       310 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~  389 (512)
                      +.++++.+...+...        .......+|+.|+++.+.+..+..    .....+++|+.|+|+.+.-. .  .....
T Consensus       203 ~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~-~--~~~~~  267 (477)
T 2id5_A          203 KVLEISHWPYLDTMT--------PNCLYGLNLTSLSITHCNLTAVPY----LAVRHLVYLRFLNLSYNPIS-T--IEGSM  267 (477)
T ss_dssp             CEEEEECCTTCCEEC--------TTTTTTCCCSEEEEESSCCCSCCH----HHHTTCTTCCEEECCSSCCC-E--ECTTS
T ss_pred             ceeeCCCCccccccC--------cccccCccccEEECcCCcccccCH----HHhcCccccCeeECCCCcCC-c--cChhh
Confidence            766666432211100        001112356677776654332211    12335667777777643211 0  01123


Q ss_pred             HhhCCCCcEEEEEe
Q 043655          390 FRSSPSIHTLILKI  403 (512)
Q Consensus       390 L~~cp~Le~L~l~~  403 (512)
                      +..+++|+.|.+..
T Consensus       268 ~~~l~~L~~L~L~~  281 (477)
T 2id5_A          268 LHELLRLQEIQLVG  281 (477)
T ss_dssp             CTTCTTCCEEECCS
T ss_pred             ccccccCCEEECCC
Confidence            45677777777754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.76  E-value=2.7e-09  Score=113.05  Aligned_cols=244  Identities=18%  Similarity=0.104  Sum_probs=144.0

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      .+++.|++...  ....+|..+..+++|++|+|++|... ..++.  ....+++|++|+|+++.+...-.... +  ..+
T Consensus       278 ~~L~~L~l~~n--~l~~lp~~l~~l~~L~~L~l~~n~l~-~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~-~--~~l  349 (606)
T 3t6q_A          278 SGLQELDLTAT--HLSELPSGLVGLSTLKKLVLSANKFE-NLCQI--SASNFPSLTHLSIKGNTKRLELGTGC-L--ENL  349 (606)
T ss_dssp             TTCSEEECTTS--CCSCCCSSCCSCTTCCEEECTTCCCS-BGGGG--CGGGCTTCSEEECCSCSSCCBCCSST-T--TTC
T ss_pred             cCCCEEeccCC--ccCCCChhhcccccCCEEECccCCcC-cCchh--hhhccCcCCEEECCCCCcccccchhh-h--hcc
Confidence            46666666533  34478888888999999999985322 22221  23468999999999886653211111 1  368


Q ss_pred             cccceecccccc--cc---chhcccccccceeeeccccCccce--eE-eccCcceEEEeeeccccCCCceEEEeCCCcce
Q 043655          218 PHLKKLDLDACY--GL---KQLKVGCRALEDLTLDNCIQLCGL--DI-FGTKLERLRVASCFDAYCDKSWVKIDASKLKV  289 (512)
Q Consensus       218 p~L~~L~L~~~~--~l---~~l~~~cp~Le~L~l~~c~~l~~~--~v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~  289 (512)
                      ++|+.|++.++.  ++   ...+..+++|+.|++.+|......  .+ ..++|+.|.+.++..............++|++
T Consensus       350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  429 (606)
T 3t6q_A          350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV  429 (606)
T ss_dssp             TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred             CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence            999999998876  22   234567889999999888532111  11 12788888888764432111111114578888


Q ss_pred             EEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccccccc
Q 043655          290 LNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFT  367 (512)
Q Consensus       290 L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~  367 (512)
                      |.++++.+...  ..++++++|+.++++.+...+...     .....+..+++|+.|+++.+.+..+..    .....++
T Consensus       430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~  500 (606)
T 3t6q_A          430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI-----QKTNSLQTLGRLEILVLSFCDLSSIDQ----HAFTSLK  500 (606)
T ss_dssp             EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE-----CSSCGGGGCTTCCEEECTTSCCCEECT----TTTTTCT
T ss_pred             EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc-----ccchhhccCCCccEEECCCCccCccCh----hhhcccc
Confidence            88888765432  346678888888887654322100     001236677888888887765433211    2344667


Q ss_pred             ccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655          368 NLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK  402 (512)
Q Consensus       368 ~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~  402 (512)
                      +|++|+|+.+.-..   ..+..+..+++| .|++.
T Consensus       501 ~L~~L~Ls~N~l~~---~~~~~l~~l~~L-~L~L~  531 (606)
T 3t6q_A          501 MMNHVDLSHNRLTS---SSIEALSHLKGI-YLNLA  531 (606)
T ss_dssp             TCCEEECCSSCCCG---GGGGGGTTCCSC-EEECC
T ss_pred             CCCEEECCCCccCc---CChhHhCccccc-EEECc
Confidence            78888776532111   123344556666 55554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.76  E-value=1.3e-08  Score=96.93  Aligned_cols=117  Identities=20%  Similarity=0.169  Sum_probs=63.7

Q ss_pred             EEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceec
Q 043655          145 IEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLD  224 (512)
Q Consensus       145 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~  224 (512)
                      +.........+|..+  .++|++|+|+++... .+++..  ...+++|++|+|+++.+.+..  ...+  ..+++|++|+
T Consensus        16 ~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~-~~~~~~--~~~~~~L~~L~l~~n~l~~~~--~~~~--~~l~~L~~L~   86 (285)
T 1ozn_A           16 TSCPQQGLQAVPVGI--PAASQRIFLHGNRIS-HVPAAS--FRACRNLTILWLHSNVLARID--AAAF--TGLALLEQLD   86 (285)
T ss_dssp             EECCSSCCSSCCTTC--CTTCSEEECTTSCCC-EECTTT--TTTCTTCCEEECCSSCCCEEC--TTTT--TTCTTCCEEE
T ss_pred             EEcCcCCcccCCcCC--CCCceEEEeeCCcCC-ccCHHH--cccCCCCCEEECCCCccceeC--Hhhc--CCccCCCEEe
Confidence            333333344555433  357888888874221 233221  246788888888877665421  1111  3578888888


Q ss_pred             cccccccc----hhcccccccceeeeccccCcccee--Ee-ccCcceEEEeee
Q 043655          225 LDACYGLK----QLKVGCRALEDLTLDNCIQLCGLD--IF-GTKLERLRVASC  270 (512)
Q Consensus       225 L~~~~~l~----~l~~~cp~Le~L~l~~c~~l~~~~--v~-~~~L~~L~l~~c  270 (512)
                      |.++..+.    ..+..+++|++|++.++.......  +. .++|++|.+.++
T Consensus        87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  139 (285)
T 1ozn_A           87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN  139 (285)
T ss_dssp             CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC
Confidence            87775222    334567788888887775221100  11 145555655554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.75  E-value=7e-09  Score=98.81  Aligned_cols=195  Identities=17%  Similarity=0.101  Sum_probs=133.6

Q ss_pred             CcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--cc-chhcccccccceeeeccccCccceeEe----ccC
Q 043655          189 FRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCIQLCGLDIF----GTK  261 (512)
Q Consensus       189 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l~~~~v~----~~~  261 (512)
                      .++|++|+|+++.+.+...  ..+  ..+++|++|+|.++.  ++ ...+..+++|+.|++.++..+..+...    .++
T Consensus        31 ~~~l~~L~l~~n~i~~~~~--~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~  106 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPA--ASF--RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR  106 (285)
T ss_dssp             CTTCSEEECTTSCCCEECT--TTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred             CCCceEEEeeCCcCCccCH--HHc--ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence            6799999999888765221  112  478999999999875  22 334667899999999999755444221    279


Q ss_pred             cceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCc--cccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCC
Q 043655          262 LERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASS--SLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLS  339 (512)
Q Consensus       262 L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~--~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~  339 (512)
                      |++|.+.++........ ..-..++|++|.++++.+....  .+.++++|+.++++.+...+..        ...+..++
T Consensus       107 L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~  177 (285)
T 1ozn_A          107 LHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP--------ERAFRGLH  177 (285)
T ss_dssp             CCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC--------TTTTTTCT
T ss_pred             CCEEECCCCcCCEECHh-HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC--------HHHhcCcc
Confidence            99999988754321111 1114689999999988765432  3678999999999866432211        12366789


Q ss_pred             cccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          340 HARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       340 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      +|+.|+++.+.+....    ......+++|++|+|..+.-. +  .....+..+|+|+.|++..
T Consensus       178 ~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~-~--~~~~~~~~l~~L~~L~l~~  234 (285)
T 1ozn_A          178 SLDRLLLHQNRVAHVH----PHAFRDLGRLMTLYLFANNLS-A--LPTEALAPLRALQYLRLND  234 (285)
T ss_dssp             TCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCS-C--CCHHHHTTCTTCCEEECCS
T ss_pred             ccCEEECCCCcccccC----HhHccCcccccEeeCCCCcCC-c--CCHHHcccCcccCEEeccC
Confidence            9999999987653332    124557889999999764222 1  1235678999999999975

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.74  E-value=3.7e-09  Score=103.03  Aligned_cols=243  Identities=14%  Similarity=0.086  Sum_probs=154.5

Q ss_pred             cCCceeEEEeccCCCCCC-CcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          138 HNVEELDIEVATDDYFNL-PRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      .+++.|++....  ...+ |..+..+++|++|+|++|... .+|..     .+++|++|+++++.+.+..  ...+  ..
T Consensus        76 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~-----~~~~L~~L~l~~n~l~~~~--~~~~--~~  143 (330)
T 1xku_A           76 KNLHTLILINNK--ISKISPGAFAPLVKLERLYLSKNQLK-ELPEK-----MPKTLQELRVHENEITKVR--KSVF--NG  143 (330)
T ss_dssp             TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCS-BCCSS-----CCTTCCEEECCSSCCCBBC--HHHH--TT
T ss_pred             CCCCEEECCCCc--CCeeCHHHhcCCCCCCEEECCCCcCC-ccChh-----hcccccEEECCCCcccccC--HhHh--cC
Confidence            567777775332  2223 555667899999999985322 33322     2589999999998876532  1112  47


Q ss_pred             Ccccceeccccccc-----cchhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEE
Q 043655          217 FPHLKKLDLDACYG-----LKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLN  291 (512)
Q Consensus       217 ~p~L~~L~L~~~~~-----l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~  291 (512)
                      +++|+.|++.++.-     ....+..+++|+.|++.++.....-....++|++|.+.++......... ....++|++|.
T Consensus       144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~  222 (330)
T 1xku_A          144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS-LKGLNNLAKLG  222 (330)
T ss_dssp             CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGG-GTTCTTCCEEE
T ss_pred             CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHH-hcCCCCCCEEE
Confidence            89999999998752     2234567899999999998632211111279999999887432111111 11468999999


Q ss_pred             eeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccc--ccccccc
Q 043655          292 WEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYF--TNLHTFT  367 (512)
Q Consensus       292 ~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~--~~~~~~~  367 (512)
                      ++++.+...  ..+..+++|+.++++.+....         +...+..+++++.|+++.+.+..+......  .......
T Consensus       223 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~  293 (330)
T 1xku_A          223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVK---------VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA  293 (330)
T ss_dssp             CCSSCCCEECTTTGGGSTTCCEEECCSSCCSS---------CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred             CCCCcCceeChhhccCCCCCCEEECCCCcCcc---------CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence            998876433  247788999999998765431         122367789999999998876554432211  1222457


Q ss_pred             ccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          368 NLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       368 ~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      .++.|++...... .....+..+.++++|+.+++..
T Consensus       294 ~l~~l~l~~N~~~-~~~i~~~~f~~~~~l~~l~L~~  328 (330)
T 1xku_A          294 SYSGVSLFSNPVQ-YWEIQPSTFRCVYVRAAVQLGN  328 (330)
T ss_dssp             CCSEEECCSSSSC-GGGSCGGGGTTCCCGGGEEC--
T ss_pred             cccceEeecCccc-ccccCccccccccceeEEEecc
Confidence            8888888754221 1112234577888898887753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.74  E-value=5.5e-09  Score=106.59  Aligned_cols=128  Identities=16%  Similarity=0.108  Sum_probs=80.5

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      ++++.|++....-. ...|..+..+++|++|+|++|.....+++..  ..++++|++|+|+++.+.+..  ...+  ..+
T Consensus        30 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~--~~~l~~L~~L~Ls~n~l~~~~--~~~~--~~l  102 (455)
T 3v47_A           30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNT--FRGLSSLIILKLDYNQFLQLE--TGAF--NGL  102 (455)
T ss_dssp             TTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTT--TTTCTTCCEEECTTCTTCEEC--TTTT--TTC
T ss_pred             CccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECccc--ccccccCCEEeCCCCccCccC--hhhc--cCc
Confidence            56777777643211 1224455578899999998853332444322  346889999999887765421  1111  368


Q ss_pred             cccceeccccccccc-----hhcccccccceeeeccccCcccee---E-eccCcceEEEeeecc
Q 043655          218 PHLKKLDLDACYGLK-----QLKVGCRALEDLTLDNCIQLCGLD---I-FGTKLERLRVASCFD  272 (512)
Q Consensus       218 p~L~~L~L~~~~~l~-----~l~~~cp~Le~L~l~~c~~l~~~~---v-~~~~L~~L~l~~c~~  272 (512)
                      ++|++|+|.++.--.     ..+..+++|++|++.++.......   + ..++|+.|.+.++..
T Consensus       103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A          103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            899999998886211     225678899999999886432211   1 237889998887654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.74  E-value=4e-09  Score=101.59  Aligned_cols=236  Identities=18%  Similarity=0.130  Sum_probs=138.3

Q ss_pred             CCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          139 NVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       139 ~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      +++.|++....  ...+|...+ .+++|++|+|++|.... ..........+++|++|+|+++.+..-..   -+  ..+
T Consensus        29 ~l~~L~L~~n~--l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~---~~--~~l  100 (306)
T 2z66_A           29 SATRLELESNK--LQSLPHGVFDKLTQLTKLSLSSNGLSF-KGCCSQSDFGTTSLKYLDLSFNGVITMSS---NF--LGL  100 (306)
T ss_dssp             TCCEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCE-EEEEEHHHHSCSCCCEEECCSCSEEEEEE---EE--ETC
T ss_pred             CCCEEECCCCc--cCccCHhHhhccccCCEEECCCCccCc-ccCcccccccccccCEEECCCCccccChh---hc--CCC
Confidence            45666554322  335665544 67888999888742210 10000112357888999888877654211   11  368


Q ss_pred             cccceecccccc--ccc--hhcccccccceeeeccccCcccee--E-eccCcceEEEeeeccccCCCceEEEeCCCcceE
Q 043655          218 PHLKKLDLDACY--GLK--QLKVGCRALEDLTLDNCIQLCGLD--I-FGTKLERLRVASCFDAYCDKSWVKIDASKLKVL  290 (512)
Q Consensus       218 p~L~~L~L~~~~--~l~--~l~~~cp~Le~L~l~~c~~l~~~~--v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L  290 (512)
                      ++|++|++.++.  .+.  ..+..+++|+.|++.+|.......  + ..++|+.|.+.++..............++|++|
T Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  180 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  180 (306)
T ss_dssp             TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence            889999888875  332  345678889999988875321111  1 126888888877643210000111245789999


Q ss_pred             EeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccc-c
Q 043655          291 NWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTF-T  367 (512)
Q Consensus       291 ~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~-~  367 (512)
                      +++++.+...  ..+.++++|+.++++.+...+...        ..+..+++|+.|+++.+.+.....    .....+ +
T Consensus       181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~~  248 (306)
T 2z66_A          181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT--------FPYKCLNSLQVLDYSLNHIMTSKK----QELQHFPS  248 (306)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS--------GGGTTCTTCCEEECTTSCCCBCSS----SSCCCCCT
T ss_pred             ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh--------hhccCcccCCEeECCCCCCcccCH----HHHHhhhc
Confidence            9888765432  346678899998887654432111        125678899999998876433221    133345 4


Q ss_pred             ccceEEEEeecc--CCcHHHHHHHHhhCC
Q 043655          368 NLKSLELHTGFN--KHNVQGLACLFRSSP  394 (512)
Q Consensus       368 ~L~~L~L~~~~~--~~~~~~l~~~L~~cp  394 (512)
                      +|+.|+|..+.-  .+...++..+++..+
T Consensus       249 ~L~~L~L~~N~~~~~c~~~~~~~~l~~~~  277 (306)
T 2z66_A          249 SLAFLNLTQNDFACTCEHQSFLQWIKDQR  277 (306)
T ss_dssp             TCCEEECTTCCEECSGGGHHHHHHHHHTG
T ss_pred             cCCEEEccCCCeecccChHHHHHHHHhhh
Confidence            899999975432  233445556665443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.73  E-value=6.8e-09  Score=109.81  Aligned_cols=238  Identities=15%  Similarity=0.113  Sum_probs=143.0

Q ss_pred             cCCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      .+++.+++..  .....+|..++ .+++|++|+|++|... .+++..  ...+++|++|+|+++.+.+...  ..+  ..
T Consensus        51 ~~l~~l~l~~--~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~--~~  121 (597)
T 3oja_B           51 NNQKIVTFKN--STMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYA--FAYAHTIQKLYMGFNAIRYLPP--HVF--QN  121 (597)
T ss_dssp             CCCSEEEESS--CEESEECTHHHHHCCCCSEEECTTSCCC-EECTTT--TTTCTTCCEEECCSSCCCCCCT--TTT--TT
T ss_pred             CCceEEEeeC--CCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHH--hcCCCCCCEEECCCCcCCCCCH--HHH--cC
Confidence            3555555542  22345676655 5899999999985322 333322  3579999999999998876321  112  47


Q ss_pred             Ccccceecccccc--ccc-hhcccccccceeeeccccCcccee---Ee-ccCcceEEEeeeccccCCCce------E---
Q 043655          217 FPHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNCIQLCGLD---IF-GTKLERLRVASCFDAYCDKSW------V---  280 (512)
Q Consensus       217 ~p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~~l~~~~---v~-~~~L~~L~l~~c~~~~~~~~~------~---  280 (512)
                      +++|+.|+|.++.  .+. .++..+++|+.|+|.+|.. ..+.   +. .++|+.|.+.++.........      +   
T Consensus       122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~  200 (597)
T 3oja_B          122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS  200 (597)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECC
T ss_pred             CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC-CCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcc
Confidence            8999999999986  332 3457889999999999863 2221   21 278999999887543211100      0   


Q ss_pred             ------EEeCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhh
Q 043655          281 ------KIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEIL  354 (512)
Q Consensus       281 ------~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~  354 (512)
                            .-..++|+.|.++++.+... .....++|+.++++.+...+.          ..+..+++|+.|+++.+.+...
T Consensus       201 ~n~l~~l~~~~~L~~L~ls~n~l~~~-~~~~~~~L~~L~L~~n~l~~~----------~~l~~l~~L~~L~Ls~N~l~~~  269 (597)
T 3oja_B          201 YNLLSTLAIPIAVEELDASHNSINVV-RGPVNVELTILKLQHNNLTDT----------AWLLNYPGLVEVDLSYNELEKI  269 (597)
T ss_dssp             SSCCSEEECCTTCSEEECCSSCCCEE-ECSCCSCCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCCCEE
T ss_pred             cCccccccCCchhheeeccCCccccc-ccccCCCCCEEECCCCCCCCC----------hhhccCCCCCEEECCCCccCCC
Confidence                  01123444444444433211 111234666666665543221          2467788999999988765433


Q ss_pred             cccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655          355 SNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII  404 (512)
Q Consensus       355 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~  404 (512)
                      ..    ..+..+++|+.|+|..+...    ++...+..+|+|+.|++...
T Consensus       270 ~~----~~~~~l~~L~~L~Ls~N~l~----~l~~~~~~l~~L~~L~Ls~N  311 (597)
T 3oja_B          270 MY----HPFVKMQRLERLYISNNRLV----ALNLYGQPIPTLKVLDLSHN  311 (597)
T ss_dssp             ES----GGGTTCSSCCEEECTTSCCC----EEECSSSCCTTCCEEECCSS
T ss_pred             CH----HHhcCccCCCEEECCCCCCC----CCCcccccCCCCcEEECCCC
Confidence            11    24456788999988653211    12233456899999998753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.73  E-value=3e-09  Score=115.92  Aligned_cols=191  Identities=21%  Similarity=0.144  Sum_probs=114.3

Q ss_pred             cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--c-cchhcccccccceeeeccccCcccee--E-eccC
Q 043655          188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--G-LKQLKVGCRALEDLTLDNCIQLCGLD--I-FGTK  261 (512)
Q Consensus       188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~-l~~l~~~cp~Le~L~l~~c~~l~~~~--v-~~~~  261 (512)
                      .+++|++|+|+++.+.+...+      ..+++|++|+|.++.  + +.. +..+++|++|++.+|.....+.  + ..++
T Consensus       176 ~l~~L~~L~Ls~n~l~~~~~~------~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  248 (768)
T 3rgz_A          176 GCGELKHLAISGNKISGDVDV------SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE  248 (768)
T ss_dssp             CCTTCCEEECCSSEEESCCBC------TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSS
T ss_pred             cCCCCCEEECCCCcccccCCc------ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCC
Confidence            456666666666666543222      357777777777765  2 222 5667788888887775322111  1 1267


Q ss_pred             cceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccC-cccceeeEEeeEEcccchhHHHHhHHHHHhhcC
Q 043655          262 LERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLEN-LASLHEASVGFILLHEDLTSAKLQSVSNFLSGL  338 (512)
Q Consensus       262 L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l  338 (512)
                      |+.|.+.+|........   ...++|++|.+.++.+...  ..+.. +++|+.+++..+...+.        ....+..+
T Consensus       249 L~~L~Ls~n~l~~~~~~---~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~--------~p~~~~~l  317 (768)
T 3rgz_A          249 LKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA--------VPPFFGSC  317 (768)
T ss_dssp             CCEEECCSSCCEESCCC---CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC--------CCGGGGGC
T ss_pred             CCEEECCCCcccCccCc---cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc--------cchHHhcC
Confidence            88888877754322111   1578899999888765322  22333 58999999876654322        12347788


Q ss_pred             CcccEeeecchhhh-hhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCC-CCcEEEEEe
Q 043655          339 SHARSLTLESPCIE-ILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSP-SIHTLILKI  403 (512)
Q Consensus       339 ~~l~~L~l~~~~~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp-~Le~L~l~~  403 (512)
                      ++|+.|+++.+.+. .+..    .....+++|++|+|..+....   .++..+..++ +|+.|++..
T Consensus       318 ~~L~~L~L~~n~l~~~ip~----~~l~~l~~L~~L~Ls~n~l~~---~~p~~l~~l~~~L~~L~Ls~  377 (768)
T 3rgz_A          318 SLLESLALSSNNFSGELPM----DTLLKMRGLKVLDLSFNEFSG---ELPESLTNLSASLLTLDLSS  377 (768)
T ss_dssp             TTCCEEECCSSEEEEECCH----HHHTTCTTCCEEECCSSEEEE---CCCTTHHHHTTTCSEEECCS
T ss_pred             CCccEEECCCCcccCcCCH----HHHhcCCCCCEEeCcCCccCc---cccHHHHhhhcCCcEEEccC
Confidence            99999999987643 1111    124567899999997542111   1112233444 999999864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.72  E-value=6e-09  Score=100.79  Aligned_cols=126  Identities=14%  Similarity=0.116  Sum_probs=82.7

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      ..++.|++.....-...+|..+..+++|++|+|++|.....+|.   ....+++|++|+|+++.+.+.  +...+  ..+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~--~p~~~--~~l  148 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD---FLSQIKTLVTLDFSYNALSGT--LPPSI--SSL  148 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG---GGGGCTTCCEEECCSSEEESC--CCGGG--GGC
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH---HHhCCCCCCEEeCCCCccCCc--CChHH--hcC
Confidence            67888888732222236788888899999999998533222332   235789999999999998852  11112  368


Q ss_pred             cccceecccccc---ccchhccccc-ccceeeeccccCccce--eEeccCcceEEEeee
Q 043655          218 PHLKKLDLDACY---GLKQLKVGCR-ALEDLTLDNCIQLCGL--DIFGTKLERLRVASC  270 (512)
Q Consensus       218 p~L~~L~L~~~~---~l~~l~~~cp-~Le~L~l~~c~~l~~~--~v~~~~L~~L~l~~c  270 (512)
                      ++|++|+|.++.   .+..-+..++ .|+.|++.++.....+  .+...+|+.|.+.++
T Consensus       149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N  207 (313)
T 1ogq_A          149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN  207 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSS
T ss_pred             CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCC
Confidence            999999999886   2333445666 9999999998532111  111123666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.72  E-value=1.6e-08  Score=111.48  Aligned_cols=70  Identities=17%  Similarity=0.061  Sum_probs=34.6

Q ss_pred             CcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc
Q 043655          156 PRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY  229 (512)
Q Consensus       156 p~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~  229 (512)
                      |..+..+++|++|+|++|...-..+. ......+++|++|+|+++.+.+.. ....+  ..+++|++|+|.++.
T Consensus        90 p~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~--~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A           90 PDAFQGLFHLFELRLYFCGLSDAVLK-DGYFRNLKALTRLDLSKNQIRSLY-LHPSF--GKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             TTSSCSCSSCCCEECTTCCCSSCCST-TCCCSSCSSCCEEEEESCCCCCCC-CCGGG--GTCSSCCEEEEESSC
T ss_pred             HhHccCCcccCEeeCcCCCCCccccc-CccccccCCCCEEECCCCcccccc-cchhH--hhCCCCCEEECCCCc
Confidence            44444566666666666422111222 111335666677776666654421 11111  256667777766653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.71  E-value=4.5e-09  Score=107.23  Aligned_cols=217  Identities=15%  Similarity=0.081  Sum_probs=153.1

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      ..++.|++....  ...+| .+..+++|++|+|++|.  +.-.+    ...+++|++|+|+++.+.+.+ +      ..+
T Consensus        42 ~~L~~L~Ls~n~--l~~~~-~l~~l~~L~~L~Ls~n~--l~~~~----~~~l~~L~~L~Ls~N~l~~~~-~------~~l  105 (457)
T 3bz5_A           42 ATLTSLDCHNSS--ITDMT-GIEKLTGLTKLICTSNN--ITTLD----LSQNTNLTYLACDSNKLTNLD-V------TPL  105 (457)
T ss_dssp             TTCCEEECCSSC--CCCCT-TGGGCTTCSEEECCSSC--CSCCC----CTTCTTCSEEECCSSCCSCCC-C------TTC
T ss_pred             CCCCEEEccCCC--cccCh-hhcccCCCCEEEccCCc--CCeEc----cccCCCCCEEECcCCCCceee-c------CCC
Confidence            678888876443  22345 46678999999999852  22222    346899999999999887642 2      478


Q ss_pred             cccceecccccc--ccchhcccccccceeeeccccCccceeEec-cCcceEEEeeeccccCCCceEEE-eCCCcceEEee
Q 043655          218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIFG-TKLERLRVASCFDAYCDKSWVKI-DASKLKVLNWE  293 (512)
Q Consensus       218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~-~~L~~L~l~~c~~~~~~~~~~~i-~~p~L~~L~~~  293 (512)
                      ++|+.|++.++.  ++.  +..+++|+.|++.++. +..+.+.. ++|+.|.+.+|....    .+.+ ..++|++|+++
T Consensus       106 ~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~----~~~~~~l~~L~~L~ls  178 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKIT----KLDVTPQTQLTTLDCS  178 (457)
T ss_dssp             TTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCC----CCCCTTCTTCCEEECC
T ss_pred             CcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCccc----ccccccCCcCCEEECC
Confidence            999999999886  442  5678999999999986 33344332 789999998874321    1122 56899999999


Q ss_pred             ccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEE
Q 043655          294 YNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLE  373 (512)
Q Consensus       294 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  373 (512)
                      ++.+... .+..+++|+.++++.+.....           -+..+++|+.|+++.+.+..+.       ...+++|+.|+
T Consensus       179 ~n~l~~l-~l~~l~~L~~L~l~~N~l~~~-----------~l~~l~~L~~L~Ls~N~l~~ip-------~~~l~~L~~L~  239 (457)
T 3bz5_A          179 FNKITEL-DVSQNKLLNRLNCDTNNITKL-----------DLNQNIQLTFLDCSSNKLTEID-------VTPLTQLTYFD  239 (457)
T ss_dssp             SSCCCCC-CCTTCTTCCEEECCSSCCSCC-----------CCTTCTTCSEEECCSSCCSCCC-------CTTCTTCSEEE
T ss_pred             CCcccee-ccccCCCCCEEECcCCcCCee-----------ccccCCCCCEEECcCCcccccC-------ccccCCCCEEE
Confidence            9877653 488899999999986654321           1667899999999988754431       34678999999


Q ss_pred             EEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655          374 LHTGFNKHNVQGLACLFRSSPSIHTLILK  402 (512)
Q Consensus       374 L~~~~~~~~~~~l~~~L~~cp~Le~L~l~  402 (512)
                      +..+.-..-    .  +..+++|+.|.+.
T Consensus       240 l~~N~l~~~----~--~~~l~~L~~L~l~  262 (457)
T 3bz5_A          240 CSVNPLTEL----D--VSTLSKLTTLHCI  262 (457)
T ss_dssp             CCSSCCSCC----C--CTTCTTCCEEECT
T ss_pred             eeCCcCCCc----C--HHHCCCCCEEecc
Confidence            976432211    1  4578888887653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.67  E-value=3.3e-08  Score=108.88  Aligned_cols=82  Identities=21%  Similarity=0.240  Sum_probs=35.3

Q ss_pred             ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCc--cchhhhhcCCCCcccceecccccccc----c-h
Q 043655          161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQ--PCLLDLFTDSSFPHLKKLDLDACYGL----K-Q  233 (512)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~l~~l~~~~~~p~L~~L~L~~~~~l----~-~  233 (512)
                      .+++|++|+|++|.....+++..  ...+++|++|+|+++.+.+.  ..+      .++++|++|+|.++.--    . .
T Consensus        46 ~l~~L~~LdLs~n~~~~~i~~~~--f~~L~~L~~L~Ls~N~l~~~~p~~~------~~l~~L~~L~Ls~n~l~~~~~~~~  117 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPLTIDKEA--FRNLPNLRILDLGSSKIYFLHPDAF------QGLFHLFELRLYFCGLSDAVLKDG  117 (844)
T ss_dssp             SCCSCSEEEECTTCCCCEECTTT--TSSCTTCCEEECTTCCCCEECTTSS------CSCSSCCCEECTTCCCSSCCSTTC
T ss_pred             ccccCeEEeCCCCCCccccCHHH--hcCCCCCCEEECCCCcCcccCHhHc------cCCcccCEeeCcCCCCCcccccCc
Confidence            45555555555532222232211  13455555555555544321  111      24555555555554311    0 1


Q ss_pred             hcccccccceeeecccc
Q 043655          234 LKVGCRALEDLTLDNCI  250 (512)
Q Consensus       234 l~~~cp~Le~L~l~~c~  250 (512)
                      .+..+++|+.|+|.+|.
T Consensus       118 ~~~~L~~L~~L~Ls~N~  134 (844)
T 3j0a_A          118 YFRNLKALTRLDLSKNQ  134 (844)
T ss_dssp             CCSSCSSCCEEEEESCC
T ss_pred             cccccCCCCEEECCCCc
Confidence            13345555555555553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.67  E-value=7.5e-08  Score=93.67  Aligned_cols=220  Identities=15%  Similarity=0.117  Sum_probs=143.9

Q ss_pred             CceeeeEEeeccCcchhhHHHHHHHhcCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcc
Q 043655          112 SYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRS  191 (512)
Q Consensus       112 ~~i~~l~l~~~~~~~~~~~wi~~~~~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~  191 (512)
                      +.++.+.+.... ...+...+..  -..++.|++....-  ..+|..+..+++|++|+|++|... .+|.   ....+++
T Consensus        81 ~~l~~L~L~~n~-l~~lp~~l~~--l~~L~~L~L~~n~l--~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~---~l~~l~~  151 (328)
T 4fcg_A           81 PGRVALELRSVP-LPQFPDQAFR--LSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLR-ALPA---SIASLNR  151 (328)
T ss_dssp             TTCCEEEEESSC-CSSCCSCGGG--GTTCSEEEEESSCC--CCCCSCGGGGTTCSEEEEESCCCC-CCCG---GGGGCTT
T ss_pred             cceeEEEccCCC-chhcChhhhh--CCCCCEEECCCCCc--cchhHHHhccCCCCEEECCCCccc-cCcH---HHhcCcC
Confidence            557777776521 1122211111  25788888875432  378888888999999999996433 3432   2457899


Q ss_pred             cceEEeeeEEeeCc--cchhh-----hhcCCCCcccceecccccc--ccchhcccccccceeeeccccCccce-eEe-cc
Q 043655          192 LHTLSLSLVILFNQ--PCLLD-----LFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGL-DIF-GT  260 (512)
Q Consensus       192 L~~L~L~~~~~~~~--~~l~~-----l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~-~v~-~~  260 (512)
                      |++|+|++|.+.+.  ..+..     .+  ..+++|+.|+|.++.  .+..-+..+++|+.|+|.+|...... .+. .+
T Consensus       152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~--~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~  229 (328)
T 4fcg_A          152 LRELSIRACPELTELPEPLASTDASGEH--QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP  229 (328)
T ss_dssp             CCEEEEEEETTCCCCCSCSEEEC-CCCE--EESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCT
T ss_pred             CCEEECCCCCCccccChhHhhccchhhh--ccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCC
Confidence            99999999876542  11110     00  148999999999886  44445678899999999998643211 111 27


Q ss_pred             CcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcC
Q 043655          261 KLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGL  338 (512)
Q Consensus       261 ~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l  338 (512)
                      +|+.|.+.+|........ .....++|++|.++++.....  ..+.++++|+.++++.+...+.        +...+..+
T Consensus       230 ~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~--------iP~~l~~L  300 (328)
T 4fcg_A          230 KLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR--------LPSLIAQL  300 (328)
T ss_dssp             TCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC--------CCGGGGGS
T ss_pred             CCCEEECcCCcchhhhHH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh--------ccHHHhhc
Confidence            899999998755422111 112468999999998754332  3467899999999987654332        23457788


Q ss_pred             CcccEeeecchhh
Q 043655          339 SHARSLTLESPCI  351 (512)
Q Consensus       339 ~~l~~L~l~~~~~  351 (512)
                      ++++.+.+.....
T Consensus       301 ~~L~~l~l~~~~~  313 (328)
T 4fcg_A          301 PANCIILVPPHLQ  313 (328)
T ss_dssp             CTTCEEECCGGGS
T ss_pred             cCceEEeCCHHHH
Confidence            9999999876543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.66  E-value=8.4e-09  Score=106.13  Aligned_cols=211  Identities=16%  Similarity=0.148  Sum_probs=132.6

Q ss_pred             cCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccchhccccccc
Q 043655          162 SDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRAL  241 (512)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l~~~cp~L  241 (512)
                      +++|++|+|++|... .+++.  ....+++|++|+|+++.+.+...+      ..+++|+.|+|.++. +..+. ..++|
T Consensus        33 ~~~L~~L~Ls~n~l~-~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~l------~~l~~L~~L~Ls~N~-l~~l~-~~~~L  101 (487)
T 3oja_A           33 AWNVKELDLSGNPLS-QISAA--DLAPFTKLELLNLSSNVLYETLDL------ESLSTLRTLDLNNNY-VQELL-VGPSI  101 (487)
T ss_dssp             GGGCCEEECCSSCCC-CCCGG--GGTTCTTCCEEECTTSCCEEEEEC------TTCTTCCEEECCSSE-EEEEE-ECTTC
T ss_pred             CCCccEEEeeCCcCC-CCCHH--HHhCCCCCCEEEeeCCCCCCCccc------ccCCCCCEEEecCCc-CCCCC-CCCCc
Confidence            558999999985221 22221  235789999999999888754332      478999999999885 33222 34889


Q ss_pred             ceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccc-cCcccceeeEEeeEE
Q 043655          242 EDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSL-ENLASLHEASVGFIL  318 (512)
Q Consensus       242 e~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l-~~~~~L~~l~l~~~~  318 (512)
                      +.|++.+|.......-..++|+.|.+.++........ .....++|++|+++++.+...  ..+ +.+++|+.++++.+.
T Consensus       102 ~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          102 ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             CEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             CEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            9999998864332222237888888887654321110 111467888888888765432  122 367888888887655


Q ss_pred             cccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcE
Q 043655          319 LHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHT  398 (512)
Q Consensus       319 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~  398 (512)
                      ..+..          -...+++|+.|+++.+.+..+..     ....+++|+.|+|+.+.-.    +++..+..+|+|+.
T Consensus       181 l~~~~----------~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~l~~L~~L~Ls~N~l~----~lp~~l~~l~~L~~  241 (487)
T 3oja_A          181 IYDVK----------GQVVFAKLKTLDLSSNKLAFMGP-----EFQSAAGVTWISLRNNKLV----LIEKALRFSQNLEH  241 (487)
T ss_dssp             CCEEE----------CCCCCTTCCEEECCSSCCCEECG-----GGGGGTTCSEEECTTSCCC----EECTTCCCCTTCCE
T ss_pred             ccccc----------ccccCCCCCEEECCCCCCCCCCH-----hHcCCCCccEEEecCCcCc----ccchhhccCCCCCE
Confidence            43221          12247788888888776543321     2346678888888653211    23334667788888


Q ss_pred             EEEEe
Q 043655          399 LILKI  403 (512)
Q Consensus       399 L~l~~  403 (512)
                      |++..
T Consensus       242 L~l~~  246 (487)
T 3oja_A          242 FDLRG  246 (487)
T ss_dssp             EECTT
T ss_pred             EEcCC
Confidence            88864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.64  E-value=3.8e-09  Score=115.37  Aligned_cols=238  Identities=12%  Similarity=0.085  Sum_probs=110.3

Q ss_pred             CCceeEEEeccCCCCCCCc--ceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          139 NVEELDIEVATDDYFNLPR--CVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       139 ~v~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      +++.|++....-  ..+|.  .+..+++|+.|+|++|... .+|    ....+++|+.|+|+++.+..   +..-+  ..
T Consensus       549 ~L~~L~Ls~N~L--~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp----~~~~L~~L~~L~Ls~N~l~~---lp~~l--~~  616 (876)
T 4ecn_A          549 KIQIFYMGYNNL--EEFPASASLQKMVKLGLLDCVHNKVR-HLE----AFGTNVKLTDLKLDYNQIEE---IPEDF--CA  616 (876)
T ss_dssp             TCCEEECCSSCC--CBCCCHHHHTTCTTCCEEECTTSCCC-BCC----CCCTTSEESEEECCSSCCSC---CCTTS--CE
T ss_pred             CccEEEeeCCcC--CccCChhhhhcCCCCCEEECCCCCcc-cch----hhcCCCcceEEECcCCcccc---chHHH--hh
Confidence            455555443222  24555  4555666666666654322 232    12345666666666655542   11111  23


Q ss_pred             Ccc-cceecccccc--ccchhcccc--cccceeeeccccCccce---e-----EeccCcceEEEeeeccccCCCceEEEe
Q 043655          217 FPH-LKKLDLDACY--GLKQLKVGC--RALEDLTLDNCIQLCGL---D-----IFGTKLERLRVASCFDAYCDKSWVKID  283 (512)
Q Consensus       217 ~p~-L~~L~L~~~~--~l~~l~~~c--p~Le~L~l~~c~~l~~~---~-----v~~~~L~~L~l~~c~~~~~~~~~~~i~  283 (512)
                      +++ |+.|+|.++.  .+...+...  +.|+.|+|.+|.....+   .     ...++|+.|.+.+|..... ...+.-.
T Consensus       617 l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l-p~~~~~~  695 (876)
T 4ecn_A          617 FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF-PTELFAT  695 (876)
T ss_dssp             ECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC-CHHHHHT
T ss_pred             ccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc-CHHHHcc
Confidence            555 6666666554  222222222  23666666665432111   0     1123566666665533210 1111113


Q ss_pred             CCCcceEEeeccccCCCc--c-------ccCcccceeeEEeeEEcccchhHHHHhHHHHHhh--cCCcccEeeecchhhh
Q 043655          284 ASKLKVLNWEYNAITASS--S-------LENLASLHEASVGFILLHEDLTSAKLQSVSNFLS--GLSHARSLTLESPCIE  352 (512)
Q Consensus       284 ~p~L~~L~~~~~~~~~~~--~-------l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~--~l~~l~~L~l~~~~~~  352 (512)
                      .++|+.|.++++.+....  .       ..++++|+.++++.+....         +...+.  .+++|+.|+|+.+.+.
T Consensus       696 l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~---------lp~~l~~~~l~~L~~L~Ls~N~L~  766 (876)
T 4ecn_A          696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS---------LSDDFRATTLPYLSNMDVSYNCFS  766 (876)
T ss_dssp             TCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC---------CCGGGSTTTCTTCCEEECCSSCCS
T ss_pred             CCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc---------chHHhhhccCCCcCEEEeCCCCCC
Confidence            466777777665543211  0       1123367777666543321         111232  5677777777766543


Q ss_pred             hhcccccccccccccccceEEEEeec--cCCc-HHHHHHHHhhCCCCcEEEEEe
Q 043655          353 ILSNRNYFTNLHTFTNLKSLELHTGF--NKHN-VQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       353 ~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~-~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      .+.     .....+++|+.|+|+.+.  .... ...++..+..+|+|+.|+|..
T Consensus       767 ~lp-----~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~  815 (876)
T 4ecn_A          767 SFP-----TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS  815 (876)
T ss_dssp             SCC-----CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred             ccc-----hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence            321     133356677777775421  0000 012233456677777777753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.64  E-value=7.8e-09  Score=100.85  Aligned_cols=214  Identities=14%  Similarity=0.078  Sum_probs=95.4

Q ss_pred             CCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccccc
Q 043655          163 DSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRA  240 (512)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~  240 (512)
                      ++|+.|+|++|... .+++..  ...+++|++|+|+++.+.+..  ...+  ..+++|++|+|.++.  .+..-  ..++
T Consensus        54 ~~l~~L~l~~n~i~-~~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~--~~l~~L~~L~L~~n~l~~l~~~--~~~~  124 (332)
T 2ft3_A           54 PDTTLLDLQNNDIS-ELRKDD--FKGLQHLYALVLVNNKISKIH--EKAF--SPLRKLQKLYISKNHLVEIPPN--LPSS  124 (332)
T ss_dssp             TTCCEEECCSSCCC-EECTTT--TTTCTTCCEEECCSSCCCEEC--GGGS--TTCTTCCEEECCSSCCCSCCSS--CCTT
T ss_pred             CCCeEEECCCCcCC-ccCHhH--hhCCCCCcEEECCCCccCccC--HhHh--hCcCCCCEEECCCCcCCccCcc--cccc
Confidence            45666666653211 222211  234666666666665554310  0011  246666666666553  11111  1156


Q ss_pred             cceeeeccccCcccee---Ee-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEee
Q 043655          241 LEDLTLDNCIQLCGLD---IF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGF  316 (512)
Q Consensus       241 Le~L~l~~c~~l~~~~---v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~  316 (512)
                      |++|++.++.. ..+.   +. .++|+.|.+.++...........+...+|++|.++++.+.... ..-.++|++++++.
T Consensus       125 L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~-~~~~~~L~~L~l~~  202 (332)
T 2ft3_A          125 LVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP-KDLPETLNELHLDH  202 (332)
T ss_dssp             CCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC-SSSCSSCSCCBCCS
T ss_pred             CCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC-ccccCCCCEEECCC
Confidence            66666666542 1111   11 2556666665543211000000011115666666555443211 11224566665554


Q ss_pred             EEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCC
Q 043655          317 ILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSI  396 (512)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~L  396 (512)
                      +...+..        ...+..+++|+.|+++.+.+..+..    .....+++|++|+|..+.-.    .++..+..+|+|
T Consensus       203 n~i~~~~--------~~~l~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~----~lp~~l~~l~~L  266 (332)
T 2ft3_A          203 NKIQAIE--------LEDLLRYSKLYRLGLGHNQIRMIEN----GSLSFLPTLRELHLDNNKLS----RVPAGLPDLKLL  266 (332)
T ss_dssp             SCCCCCC--------TTSSTTCTTCSCCBCCSSCCCCCCT----TGGGGCTTCCEEECCSSCCC----BCCTTGGGCTTC
T ss_pred             CcCCccC--------HHHhcCCCCCCEEECCCCcCCcCCh----hHhhCCCCCCEEECCCCcCe----ecChhhhcCccC
Confidence            3322110        1124456666777766654332211    12335567777776543211    222234567777


Q ss_pred             cEEEEEe
Q 043655          397 HTLILKI  403 (512)
Q Consensus       397 e~L~l~~  403 (512)
                      +.|++..
T Consensus       267 ~~L~l~~  273 (332)
T 2ft3_A          267 QVVYLHT  273 (332)
T ss_dssp             CEEECCS
T ss_pred             CEEECCC
Confidence            7777653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.64  E-value=3.6e-09  Score=104.60  Aligned_cols=208  Identities=17%  Similarity=0.132  Sum_probs=112.4

Q ss_pred             cCc-ccceEEeeeEEeeCc--cchhhhhcCCCCcccceecccccc-------ccchhcccc-cccceeeeccccCcccee
Q 043655          188 GFR-SLHTLSLSLVILFNQ--PCLLDLFTDSSFPHLKKLDLDACY-------GLKQLKVGC-RALEDLTLDNCIQLCGLD  256 (512)
Q Consensus       188 ~~~-~L~~L~L~~~~~~~~--~~l~~l~~~~~~p~L~~L~L~~~~-------~l~~l~~~c-p~Le~L~l~~c~~l~~~~  256 (512)
                      .++ +|++|+|+++.+.+.  ..+..++. ..+++|++|+|.++.       .+...+..+ ++|+.|++.+|. +....
T Consensus        48 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~  125 (362)
T 3goz_A           48 NTPASVTSLNLSGNSLGFKNSDELVQILA-AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKS  125 (362)
T ss_dssp             TCCTTCCEEECCSSCGGGSCHHHHHHHHH-TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred             hCCCceeEEECcCCCCCHHHHHHHHHHHh-ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHH
Confidence            455 677777777666542  22333332 223677777777664       111223334 677777777775 22222


Q ss_pred             Ee---------ccCcceEEEeeeccccCCCceEE---EeC-CCcceEEeeccccCCCc------cccCc-ccceeeEEee
Q 043655          257 IF---------GTKLERLRVASCFDAYCDKSWVK---IDA-SKLKVLNWEYNAITASS------SLENL-ASLHEASVGF  316 (512)
Q Consensus       257 v~---------~~~L~~L~l~~c~~~~~~~~~~~---i~~-p~L~~L~~~~~~~~~~~------~l~~~-~~L~~l~l~~  316 (512)
                      ..         .++|++|.+.+|.....+...+.   ... ++|++|.++++.+....      .+... ++|+.++++.
T Consensus       126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  205 (362)
T 3goz_A          126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA  205 (362)
T ss_dssp             HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence            11         13677777776644322211110   112 37888888777654332      22344 4888888876


Q ss_pred             EEcccchhHHHHhHHHHHhhc-CCcccEeeecchhhhhhcccccccccccccccceEEEEeec-cCCcHHHHHHHHhhCC
Q 043655          317 ILLHEDLTSAKLQSVSNFLSG-LSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGF-NKHNVQGLACLFRSSP  394 (512)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~l~~~L~~cp  394 (512)
                      +...+..    ...+...+.. .++|+.|+++.+.+..............+++|++|+|..+. ......++..+.+.++
T Consensus       206 N~i~~~~----~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~  281 (362)
T 3goz_A          206 NLLGLKS----YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP  281 (362)
T ss_dssp             SCGGGSC----HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST
T ss_pred             CCCChhH----HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc
Confidence            6543221    1234445555 45899999988765332221111244567889999998753 2234455666666666


Q ss_pred             CCcEEEE
Q 043655          395 SIHTLIL  401 (512)
Q Consensus       395 ~Le~L~l  401 (512)
                      +++.|..
T Consensus       282 ~l~~L~~  288 (362)
T 3goz_A          282 NIQKIIL  288 (362)
T ss_dssp             TCCEEEE
T ss_pred             cCCceEE
Confidence            6666653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.63  E-value=3.1e-08  Score=108.17  Aligned_cols=93  Identities=11%  Similarity=-0.010  Sum_probs=56.3

Q ss_pred             CCccee--ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEE-eeC---ccchhhhh-cCCCCcccceecccc
Q 043655          155 LPRCVI--TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVI-LFN---QPCLLDLF-TDSSFPHLKKLDLDA  227 (512)
Q Consensus       155 lp~~l~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~---~~~l~~l~-~~~~~p~L~~L~L~~  227 (512)
                      +|..+.  .+++|++|+|++|.....+|.   ....+++|+.|+|+++. +.+   +..+..+. ....+|+|+.|+|.+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~---~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~  557 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPD---FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY  557 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCG---GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChH---HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence            777775  788888888888533333432   23467888888888776 543   12233321 223566777777776


Q ss_pred             cc--ccch--hcccccccceeeecccc
Q 043655          228 CY--GLKQ--LKVGCRALEDLTLDNCI  250 (512)
Q Consensus       228 ~~--~l~~--l~~~cp~Le~L~l~~c~  250 (512)
                      +.  .+..  .+..+++|+.|+|.++.
T Consensus       558 N~L~~ip~~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          558 NNLEEFPASASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             SCCCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred             CcCCccCChhhhhcCCCCCEEECCCCC
Confidence            65  3333  44566667777766664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.63  E-value=8.5e-09  Score=99.92  Aligned_cols=103  Identities=15%  Similarity=0.088  Sum_probs=57.5

Q ss_pred             CCCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccc
Q 043655          284 ASKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFT  361 (512)
Q Consensus       284 ~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~  361 (512)
                      .++|++|.++++.+...  ..+..+++|+.++++.+...+..       ...+...+++++.|+++.+.+..+.      
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~------  185 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-------FAELAASSDTLEHLNLQYNFIYDVK------  185 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE-------GGGGGGGTTTCCEEECTTSCCCEEE------
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc-------HHHHhhccCcCCEEECCCCcCcccc------
Confidence            45666666666654332  23456677777777654432211       1123345677888888776654331      


Q ss_pred             ccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          362 NLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       362 ~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      ....+++|++|+|+.+.-.    .+..-+..+++|+.|++..
T Consensus       186 ~~~~l~~L~~L~Ls~N~l~----~l~~~~~~l~~L~~L~L~~  223 (317)
T 3o53_A          186 GQVVFAKLKTLDLSSNKLA----FMGPEFQSAAGVTWISLRN  223 (317)
T ss_dssp             CCCCCTTCCEEECCSSCCC----EECGGGGGGTTCSEEECTT
T ss_pred             cccccccCCEEECCCCcCC----cchhhhcccCcccEEECcC
Confidence            1124678888887654211    1111256778888887753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.61  E-value=2.6e-08  Score=106.08  Aligned_cols=93  Identities=6%  Similarity=-0.077  Sum_probs=57.2

Q ss_pred             CCccee--ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEE-eeC---ccchhhhhcCCCCcccceeccccc
Q 043655          155 LPRCVI--TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVI-LFN---QPCLLDLFTDSSFPHLKKLDLDAC  228 (512)
Q Consensus       155 lp~~l~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~---~~~l~~l~~~~~~p~L~~L~L~~~  228 (512)
                      +|..+.  .+++|++|+|++|.....+|..   ...+++|++|+|+++. +.+   ...+..+.....+++|+.|+|.++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n  315 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTF---LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN  315 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTT---TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHH---HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence            788887  8889999999886433344432   3468888888888876 543   122332211123577777777766


Q ss_pred             c--ccch--hcccccccceeeecccc
Q 043655          229 Y--GLKQ--LKVGCRALEDLTLDNCI  250 (512)
Q Consensus       229 ~--~l~~--l~~~cp~Le~L~l~~c~  250 (512)
                      .  .+..  .+..+++|+.|++.+|.
T Consensus       316 ~l~~ip~~~~l~~l~~L~~L~L~~N~  341 (636)
T 4eco_A          316 NLKTFPVETSLQKMKKLGMLECLYNQ  341 (636)
T ss_dssp             CCSSCCCHHHHTTCTTCCEEECCSCC
T ss_pred             cCCccCchhhhccCCCCCEEeCcCCc
Confidence            4  3333  44566677777776664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.60  E-value=1.2e-08  Score=108.55  Aligned_cols=240  Identities=14%  Similarity=0.109  Sum_probs=124.9

Q ss_pred             cCCceeEEEeccCCCCCCCc--ceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCC
Q 043655          138 HNVEELDIEVATDDYFNLPR--CVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDS  215 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~  215 (512)
                      ..++.|++....-  ..+|.  .+..+++|++|+|++|.....+|    ....+++|++|+|+++.+..   +..-+  .
T Consensus       305 ~~L~~L~L~~n~l--~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip----~~~~l~~L~~L~L~~N~l~~---lp~~l--~  373 (636)
T 4eco_A          305 EKIQIIYIGYNNL--KTFPVETSLQKMKKLGMLECLYNQLEGKLP----AFGSEIKLASLNLAYNQITE---IPANF--C  373 (636)
T ss_dssp             GTCCEEECCSSCC--SSCCCHHHHTTCTTCCEEECCSCCCEEECC----CCEEEEEESEEECCSSEEEE---CCTTS--E
T ss_pred             CCCCEEECCCCcC--CccCchhhhccCCCCCEEeCcCCcCccchh----hhCCCCCCCEEECCCCcccc---ccHhh--h
Confidence            4566666553322  25666  56667777777777643322333    12356777777777776653   11111  2


Q ss_pred             CCcc-cceecccccc--ccchhccc--ccccceeeeccccCccce--eE--------eccCcceEEEeeeccccCCCceE
Q 043655          216 SFPH-LKKLDLDACY--GLKQLKVG--CRALEDLTLDNCIQLCGL--DI--------FGTKLERLRVASCFDAYCDKSWV  280 (512)
Q Consensus       216 ~~p~-L~~L~L~~~~--~l~~l~~~--cp~Le~L~l~~c~~l~~~--~v--------~~~~L~~L~l~~c~~~~~~~~~~  280 (512)
                      .+++ |+.|++.++.  .+...+..  +++|+.|++.+|......  .+        ..++|+.|.+.++..... ...+
T Consensus       374 ~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~  452 (636)
T 4eco_A          374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF-PKEL  452 (636)
T ss_dssp             EECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC-CTHH
T ss_pred             hhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC-CHHH
Confidence            4566 7777777665  22222222  236777777776532211  01        224677777776543211 1111


Q ss_pred             EEeCCCcceEEeeccccCCCc--cc-------cCcccceeeEEeeEEcccchhHHHHhHHHHHh--hcCCcccEeeecch
Q 043655          281 KIDASKLKVLNWEYNAITASS--SL-------ENLASLHEASVGFILLHEDLTSAKLQSVSNFL--SGLSHARSLTLESP  349 (512)
Q Consensus       281 ~i~~p~L~~L~~~~~~~~~~~--~l-------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l--~~l~~l~~L~l~~~  349 (512)
                      .-..++|++|.++++.+....  .+       .++++|+.++++.+....         +...+  ..+++|+.|+++.+
T Consensus       453 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~---------lp~~~~~~~l~~L~~L~Ls~N  523 (636)
T 4eco_A          453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK---------LSDDFRATTLPYLVGIDLSYN  523 (636)
T ss_dssp             HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB---------CCGGGSTTTCTTCCEEECCSS
T ss_pred             HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc---------cChhhhhccCCCcCEEECCCC
Confidence            112567777777776554211  11       122377777776554321         11123  36777888888776


Q ss_pred             hhhhhcccccccccccccccceEEEEeec--cCCc-HHHHHHHHhhCCCCcEEEEEe
Q 043655          350 CIEILSNRNYFTNLHTFTNLKSLELHTGF--NKHN-VQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~-~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      .+..+.     .....+++|+.|+|+.+.  .... ...++..+..+++|+.|++..
T Consensus       524 ~l~~ip-----~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~  575 (636)
T 4eco_A          524 SFSKFP-----TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS  575 (636)
T ss_dssp             CCSSCC-----CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred             CCCCcC-----hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence            654321     233457778888774321  0000 112333456788888887754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.58  E-value=3e-08  Score=93.72  Aligned_cols=186  Identities=17%  Similarity=0.131  Sum_probs=89.1

Q ss_pred             cCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--cc-chhcccc
Q 043655          162 SDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GL-KQLKVGC  238 (512)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l-~~l~~~c  238 (512)
                      .++|+.|.+.++  .+...+.   ...+++|++|+|+++.+.+...+      ..+++|++|+|.++.  ++ ...+..+
T Consensus        40 l~~L~~L~l~~~--~i~~~~~---l~~l~~L~~L~l~~n~l~~~~~l------~~l~~L~~L~L~~n~l~~~~~~~~~~l  108 (272)
T 3rfs_A           40 LNSIDQIIANNS--DIKSVQG---IQYLPNVRYLALGGNKLHDISAL------KELTNLTYLILTGNQLQSLPNGVFDKL  108 (272)
T ss_dssp             HTTCCEEECTTS--CCCCCTT---GGGCTTCCEEECTTSCCCCCGGG------TTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             ccceeeeeeCCC--Ccccccc---cccCCCCcEEECCCCCCCCchhh------cCCCCCCEEECCCCccCccChhHhcCC
Confidence            455566665552  2211111   23466666666666655543222      356666666666654  11 1223456


Q ss_pred             cccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccceeeEEee
Q 043655          239 RALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLHEASVGF  316 (512)
Q Consensus       239 p~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~  316 (512)
                      ++|+.|++.+|.. ..+.-..                     .-..++|++|.++++.+...  ..+.++++|+.++++.
T Consensus       109 ~~L~~L~L~~n~l-~~~~~~~---------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  166 (272)
T 3rfs_A          109 TNLKELVLVENQL-QSLPDGV---------------------FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY  166 (272)
T ss_dssp             TTCCEEECTTSCC-CCCCTTT---------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cCCCEEECCCCcC-CccCHHH---------------------hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence            6777777766642 1111000                     00123444444444333221  1134555555555554


Q ss_pred             EEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCC
Q 043655          317 ILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSI  396 (512)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~L  396 (512)
                      +...+..        ...+..+++|+.|++..+.+..+..    .....+++|++|+|..+...          ..||+|
T Consensus       167 n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~----------~~~~~l  224 (272)
T 3rfs_A          167 NQLQSLP--------EGVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHDNPWD----------CTCPGI  224 (272)
T ss_dssp             SCCCCCC--------TTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCBC----------CCTTTT
T ss_pred             CCcCccC--------HHHhcCCccCCEEECCCCcCCccCH----HHHhCCcCCCEEEccCCCcc----------ccCcHH
Confidence            4322110        1234566777788877665433221    23446778888888654222          236666


Q ss_pred             cEEEEE
Q 043655          397 HTLILK  402 (512)
Q Consensus       397 e~L~l~  402 (512)
                      +.|.+.
T Consensus       225 ~~l~~~  230 (272)
T 3rfs_A          225 RYLSEW  230 (272)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.57  E-value=4.4e-07  Score=94.15  Aligned_cols=246  Identities=15%  Similarity=0.073  Sum_probs=134.8

Q ss_pred             cCCceeEEEeccCCCCCC-CcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          138 HNVEELDIEVATDDYFNL-PRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      ..++.|++....  ...+ |..+..+++|++|+|++|... .+|..     .+++|++|+|+++.+.+.. +...+  ..
T Consensus        45 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-----~l~~L~~L~L~~N~l~~~~-~p~~~--~~  113 (520)
T 2z7x_B           45 SKLRILIISHNR--IQYLDISVFKFNQELEYLDLSHNKLV-KISCH-----PTVNLKHLDLSFNAFDALP-ICKEF--GN  113 (520)
T ss_dssp             TTCCEEECCSSC--CCEEEGGGGTTCTTCCEEECCSSCCC-EEECC-----CCCCCSEEECCSSCCSSCC-CCGGG--GG
T ss_pred             ccccEEecCCCc--cCCcChHHhhcccCCCEEecCCCcee-ecCcc-----ccCCccEEeccCCcccccc-chhhh--cc
Confidence            567776665332  1223 444556788888888885332 34432     5788888888888776421 11111  35


Q ss_pred             Ccccceeccccccccchhccccccc--ceeeeccccC---------cccee-----E-----------------eccCcc
Q 043655          217 FPHLKKLDLDACYGLKQLKVGCRAL--EDLTLDNCIQ---------LCGLD-----I-----------------FGTKLE  263 (512)
Q Consensus       217 ~p~L~~L~L~~~~~l~~l~~~cp~L--e~L~l~~c~~---------l~~~~-----v-----------------~~~~L~  263 (512)
                      +++|++|++.++.--..-+..++.|  +.|++.+|..         +..+.     +                 ..++|+
T Consensus       114 l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~  193 (520)
T 2z7x_B          114 MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE  193 (520)
T ss_dssp             CTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE
T ss_pred             CCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccccee
Confidence            7888888888775222334456666  7777777643         01100     0                 012333


Q ss_pred             eEEEeeec---------------cccCCCceEEE-----------------eCCCcceEEeeccccCCC--ccc-----c
Q 043655          264 RLRVASCF---------------DAYCDKSWVKI-----------------DASKLKVLNWEYNAITAS--SSL-----E  304 (512)
Q Consensus       264 ~L~l~~c~---------------~~~~~~~~~~i-----------------~~p~L~~L~~~~~~~~~~--~~l-----~  304 (512)
                      .|.+.++.               ........+.+                 ..++|++|.++++.+...  ..+     +
T Consensus       194 ~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~  273 (520)
T 2z7x_B          194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT  273 (520)
T ss_dssp             ECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSC
T ss_pred             eccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccc
Confidence            33333321               00000000110                 134778887777654321  122     5


Q ss_pred             CcccceeeEEeeEEcccchhHHHHhHHHHH---------------------hhcCCcccEeeecchhhhhhccccccccc
Q 043655          305 NLASLHEASVGFILLHEDLTSAKLQSVSNF---------------------LSGLSHARSLTLESPCIEILSNRNYFTNL  363 (512)
Q Consensus       305 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~---------------------l~~l~~l~~L~l~~~~~~~~~~~~~~~~~  363 (512)
                      .++.|+.+++..... .- .   ...+..+                     ...+++++.|+++.+.+....    +...
T Consensus       274 ~l~~L~~l~l~~n~~-~~-p---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~  344 (520)
T 2z7x_B          274 SLKALSIHQVVSDVF-GF-P---QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTV----FENC  344 (520)
T ss_dssp             CCCEEEEEEEEECCC-CS-C---THHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT----TTTC
T ss_pred             cCceeEeccccccce-ec-c---hhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhh----hhhh
Confidence            677777777765443 10 0   0111122                     156788888888876543311    1244


Q ss_pred             ccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655          364 HTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII  404 (512)
Q Consensus       364 ~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~  404 (512)
                      ..+++|+.|.|..+ .-.+...++..+..+++|+.|++...
T Consensus       345 ~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N  384 (520)
T 2z7x_B          345 GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQN  384 (520)
T ss_dssp             CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred             ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCC
Confidence            57889999999764 22344566778899999999998653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.57  E-value=6.4e-08  Score=92.43  Aligned_cols=78  Identities=17%  Similarity=0.097  Sum_probs=55.0

Q ss_pred             ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccc
Q 043655          161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGC  238 (512)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~c  238 (512)
                      .+++|+.|.+++|  .+.-.+.   ...+++|++|+|+++.+.+...+      ..+++|+.|+|.++.  .+.. +..+
T Consensus        44 ~l~~L~~L~l~~~--~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~l------~~l~~L~~L~l~~n~l~~~~~-l~~l  111 (291)
T 1h6t_A           44 ELNSIDQIIANNS--DIKSVQG---IQYLPNVTKLFLNGNKLTDIKPL------ANLKNLGWLFLDENKVKDLSS-LKDL  111 (291)
T ss_dssp             HHHTCCEEECTTS--CCCCCTT---GGGCTTCCEEECCSSCCCCCGGG------TTCTTCCEEECCSSCCCCGGG-GTTC
T ss_pred             hcCcccEEEccCC--CcccChh---HhcCCCCCEEEccCCccCCCccc------ccCCCCCEEECCCCcCCCChh-hccC
Confidence            4788999999884  2322121   34689999999998888764332      478889999988875  3333 4567


Q ss_pred             cccceeeecccc
Q 043655          239 RALEDLTLDNCI  250 (512)
Q Consensus       239 p~Le~L~l~~c~  250 (512)
                      ++|+.|++.+|.
T Consensus       112 ~~L~~L~L~~n~  123 (291)
T 1h6t_A          112 KKLKSLSLEHNG  123 (291)
T ss_dssp             TTCCEEECTTSC
T ss_pred             CCCCEEECCCCc
Confidence            888888888875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.56  E-value=2.5e-08  Score=107.25  Aligned_cols=37  Identities=19%  Similarity=0.149  Sum_probs=17.4

Q ss_pred             ccCCccEEEEecccCccccCCCccccccCcccceEEeeeE
Q 043655          161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLV  200 (512)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  200 (512)
                      .+++|++|+|++|... .+++.  ...++++|++|+|+++
T Consensus       327 ~l~~L~~L~l~~n~l~-~~~~~--~~~~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          327 WLKCLEHLNMEDNDIP-GIKSN--MFTGLINLKYLSLSNS  363 (680)
T ss_dssp             TCTTCCEEECCSCCBC-CCCTT--TTTTCTTCCEEECTTC
T ss_pred             cCCCCCEEECCCCccC-CCChh--HhccccCCcEEECCCC
Confidence            4566666666653211 11111  1234556666666544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.55  E-value=4.8e-09  Score=104.62  Aligned_cols=210  Identities=16%  Similarity=0.120  Sum_probs=129.0

Q ss_pred             cCcccceEEeeeEEeeCcc--chhhhhcCCCCcccceecccccc--c-----------cchhcccccccceeeeccccCc
Q 043655          188 GFRSLHTLSLSLVILFNQP--CLLDLFTDSSFPHLKKLDLDACY--G-----------LKQLKVGCRALEDLTLDNCIQL  252 (512)
Q Consensus       188 ~~~~L~~L~L~~~~~~~~~--~l~~l~~~~~~p~L~~L~L~~~~--~-----------l~~l~~~cp~Le~L~l~~c~~l  252 (512)
                      .+++|++|+|+++.+.+..  .+...+  ..+++|++|+|.+|.  .           +...+..+++|+.|+|.+|..-
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENI--ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTT--TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHH--HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            4566777777776665421  122222  357778888777652  1           1122467899999999998632


Q ss_pred             c----ce--e-EeccCcceEEEeeeccccCCCceEE--E-eC---------CCcceEEeeccccCCC------ccccCcc
Q 043655          253 C----GL--D-IFGTKLERLRVASCFDAYCDKSWVK--I-DA---------SKLKVLNWEYNAITAS------SSLENLA  307 (512)
Q Consensus       253 ~----~~--~-v~~~~L~~L~l~~c~~~~~~~~~~~--i-~~---------p~L~~L~~~~~~~~~~------~~l~~~~  307 (512)
                      .    .+  . -..++|++|.+.+|.........+.  + ..         ++|++|.++++.+...      ..+..++
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  187 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  187 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence            2    11  1 1238999999999854311100110  0 11         8999999998876422      1345778


Q ss_pred             cceeeEEeeEEcccchhHHHHhHHHH-HhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccC-CcHHH
Q 043655          308 SLHEASVGFILLHEDLTSAKLQSVSN-FLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNK-HNVQG  385 (512)
Q Consensus       308 ~L~~l~l~~~~~~~~~~~~~~~~~~~-~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~  385 (512)
                      +|+.++++.+......    ...+.. .+..+++|+.|+|+.+.+...........+..+++|++|+|+.+.-. .....
T Consensus       188 ~L~~L~L~~n~l~~~g----~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEG----IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             TCCEEECCSSCCCHHH----HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             CcCEEECcCCCCCHhH----HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            9999999877543211    122333 67789999999999877532111111124457889999999764322 12234


Q ss_pred             HHHHHhh--CCCCcEEEEEe
Q 043655          386 LACLFRS--SPSIHTLILKI  403 (512)
Q Consensus       386 l~~~L~~--cp~Le~L~l~~  403 (512)
                      +...++.  +|+|+.|+|..
T Consensus       264 l~~~l~~~~~~~L~~L~L~~  283 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQY  283 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCS
T ss_pred             HHHHHhhccCCCeEEEECcC
Confidence            5666755  99999999975

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.53  E-value=1.3e-07  Score=99.64  Aligned_cols=171  Identities=18%  Similarity=0.057  Sum_probs=88.2

Q ss_pred             CcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccchhcccccccceeeeccccCccceeEeccCcceEEEe
Q 043655          189 FRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVA  268 (512)
Q Consensus       189 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~  268 (512)
                      +++|++|+|+++.+.+-.        ..+++|++|++.++. +..+-...++|+.|++.+|. +..+.-..++|+.|.+.
T Consensus       100 l~~L~~L~Ls~N~l~~l~--------~~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~  169 (622)
T 3g06_A          100 PPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQ-LASLPALPSELCKLWAY  169 (622)
T ss_dssp             CTTCCEEEECSCCCCCCC--------CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECC
T ss_pred             CCCCCEEECcCCcCCCCC--------CCCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCCc-CCCcCCccCCCCEEECC
Confidence            555666665555444311        134556666665553 22233334666666666653 22222223556666665


Q ss_pred             eeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecc
Q 043655          269 SCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLES  348 (512)
Q Consensus       269 ~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~  348 (512)
                      ++....     +....++|+.|.++++.+....  ...++|+.++++.+....            +...+++|+.|+++.
T Consensus       170 ~N~l~~-----l~~~~~~L~~L~Ls~N~l~~l~--~~~~~L~~L~L~~N~l~~------------l~~~~~~L~~L~Ls~  230 (622)
T 3g06_A          170 NNQLTS-----LPMLPSGLQELSVSDNQLASLP--TLPSELYKLWAYNNRLTS------------LPALPSGLKELIVSG  230 (622)
T ss_dssp             SSCCSC-----CCCCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSS------------CCCCCTTCCEEECCS
T ss_pred             CCCCCC-----CcccCCCCcEEECCCCCCCCCC--CccchhhEEECcCCcccc------------cCCCCCCCCEEEccC
Confidence            543221     1123467777777766554321  134566666665443211            112346778888876


Q ss_pred             hhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          349 PCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      +.+..+.        ..+++|+.|+|+.+.-.    .++.   .+++|++|++..
T Consensus       231 N~L~~lp--------~~l~~L~~L~Ls~N~L~----~lp~---~~~~L~~L~Ls~  270 (622)
T 3g06_A          231 NRLTSLP--------VLPSELKELMVSGNRLT----SLPM---LPSGLLSLSVYR  270 (622)
T ss_dssp             SCCSCCC--------CCCTTCCEEECCSSCCS----CCCC---CCTTCCEEECCS
T ss_pred             CccCcCC--------CCCCcCcEEECCCCCCC----cCCc---ccccCcEEeCCC
Confidence            6543321        35578888888754211    1111   567888888764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.52  E-value=1.4e-08  Score=100.38  Aligned_cols=209  Identities=18%  Similarity=0.154  Sum_probs=134.2

Q ss_pred             CcccceEEeeeEEeeCcc--chhhhhcCCCCc-ccceecccccc----c---cchhccc-ccccceeeeccccCccceeE
Q 043655          189 FRSLHTLSLSLVILFNQP--CLLDLFTDSSFP-HLKKLDLDACY----G---LKQLKVG-CRALEDLTLDNCIQLCGLDI  257 (512)
Q Consensus       189 ~~~L~~L~L~~~~~~~~~--~l~~l~~~~~~p-~L~~L~L~~~~----~---l~~l~~~-cp~Le~L~l~~c~~l~~~~v  257 (512)
                      .++|++|+|+++.+.+..  .+.+.+  ..+| +|++|+|.++.    +   +..++.. +++|++|+|.+|.- .....
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-~~~~~   97 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAF--ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL-SYKSS   97 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHH--HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGSCH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHH--HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC-ChHHH
Confidence            345888888888876532  122333  2678 99999999986    1   2223333 39999999999973 22211


Q ss_pred             -------ec--cCcceEEEeeeccccCCCceEE--E-e-CCCcceEEeeccccCCCc------cccCcc-cceeeEEeeE
Q 043655          258 -------FG--TKLERLRVASCFDAYCDKSWVK--I-D-ASKLKVLNWEYNAITASS------SLENLA-SLHEASVGFI  317 (512)
Q Consensus       258 -------~~--~~L~~L~l~~c~~~~~~~~~~~--i-~-~p~L~~L~~~~~~~~~~~------~l~~~~-~L~~l~l~~~  317 (512)
                             ..  ++|++|.+.+|.........+.  + . ..+|++|+++++.+....      .+...+ +|++++++.+
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence                   11  6899999999865433211111  1 1 359999999998765321      123444 9999999877


Q ss_pred             EcccchhHHHHhHHHHHhhcCC-cccEeeecchhhhhhccccccccccc-ccccceEEEEeecc-CCcHHHHHHHHhhCC
Q 043655          318 LLHEDLTSAKLQSVSNFLSGLS-HARSLTLESPCIEILSNRNYFTNLHT-FTNLKSLELHTGFN-KHNVQGLACLFRSSP  394 (512)
Q Consensus       318 ~~~~~~~~~~~~~~~~~l~~l~-~l~~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~-~~~~~~l~~~L~~cp  394 (512)
                      ...+..    ...+...+..++ +|+.|+++.+.+.............. .++|++|+|+.+.- ......+..+++.++
T Consensus       178 ~l~~~~----~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~  253 (362)
T 3goz_A          178 NLASKN----CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK  253 (362)
T ss_dssp             CGGGSC----HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred             CCchhh----HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence            543321    234666778884 99999999887644221111112222 35899999986532 334567778889999


Q ss_pred             CCcEEEEEee
Q 043655          395 SIHTLILKII  404 (512)
Q Consensus       395 ~Le~L~l~~~  404 (512)
                      +|+.|.+...
T Consensus       254 ~L~~L~L~~n  263 (362)
T 3goz_A          254 HLQTVYLDYD  263 (362)
T ss_dssp             TCSEEEEEHH
T ss_pred             CccEEEeccC
Confidence            9999999864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.52  E-value=1.4e-07  Score=88.90  Aligned_cols=183  Identities=20%  Similarity=0.227  Sum_probs=88.6

Q ss_pred             CCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--
Q 043655          152 YFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--  229 (512)
Q Consensus       152 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--  229 (512)
                      ...+|..+  .++|+.|+|+++.. ..+++.  ....+++|++|+|+++.+..-..  .++  ..+++|++|+|.++.  
T Consensus        28 l~~ip~~~--~~~l~~L~l~~n~l-~~~~~~--~~~~l~~L~~L~l~~n~l~~i~~--~~~--~~l~~L~~L~l~~n~l~   98 (270)
T 2o6q_A           28 LTAIPSNI--PADTKKLDLQSNKL-SSLPSK--AFHRLTKLRLLYLNDNKLQTLPA--GIF--KELKNLETLWVTDNKLQ   98 (270)
T ss_dssp             CSSCCSCC--CTTCSEEECCSSCC-SCCCTT--SSSSCTTCCEEECCSSCCSCCCT--TTT--SSCTTCCEEECCSSCCC
T ss_pred             CCccCCCC--CCCCCEEECcCCCC-CeeCHH--HhcCCCCCCEEECCCCccCeeCh--hhh--cCCCCCCEEECCCCcCC
Confidence            33455433  25677777776421 122221  12356777777777665543110  111  245666666666554  


Q ss_pred             cc-chhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCc
Q 043655          230 GL-KQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENL  306 (512)
Q Consensus       230 ~l-~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~  306 (512)
                      .+ ...+..+++|+.|++.++.. ..+..                    . ..-..++|++|.++++.+...  ..+..+
T Consensus        99 ~~~~~~~~~l~~L~~L~l~~n~l-~~~~~--------------------~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  156 (270)
T 2o6q_A           99 ALPIGVFDQLVNLAELRLDRNQL-KSLPP--------------------R-VFDSLTKLTYLSLGYNELQSLPKGVFDKL  156 (270)
T ss_dssp             CCCTTTTTTCSSCCEEECCSSCC-CCCCT--------------------T-TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCHhHcccccCCCEEECCCCcc-CeeCH--------------------H-HhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence            11 12334556666666665531 11100                    0 001235566666655544322  124556


Q ss_pred             ccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEee
Q 043655          307 ASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTG  377 (512)
Q Consensus       307 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  377 (512)
                      ++|+.+++..+......        ...+..+++|+.|+++.+.+..+..    .....+++|+.|+|..+
T Consensus       157 ~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          157 TSLKELRLYNNQLKRVP--------EGAFDKLTELKTLKLDNNQLKRVPE----GAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             TTCCEEECCSSCCSCCC--------TTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSS
T ss_pred             cccceeEecCCcCcEeC--------hhHhccCCCcCEEECCCCcCCcCCH----HHhccccCCCEEEecCC
Confidence            66666666544321110        1124556777777777665433221    13345677777777654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.51  E-value=8.4e-08  Score=93.45  Aligned_cols=237  Identities=18%  Similarity=0.099  Sum_probs=136.1

Q ss_pred             cCCceeEEEeccCCCCCCC-cceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          138 HNVEELDIEVATDDYFNLP-RCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      .+++.|++....  ...++ ..+..+++|++|+|++|... .+++.  ....+++|++|+|+++.+..-..       ..
T Consensus        54 ~~l~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~~~l~~L~~L~L~~n~l~~l~~-------~~  121 (332)
T 2ft3_A           54 PDTTLLDLQNND--ISELRKDDFKGLQHLYALVLVNNKIS-KIHEK--AFSPLRKLQKLYISKNHLVEIPP-------NL  121 (332)
T ss_dssp             TTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCC-EECGG--GSTTCTTCCEEECCSSCCCSCCS-------SC
T ss_pred             CCCeEEECCCCc--CCccCHhHhhCCCCCcEEECCCCccC-ccCHh--HhhCcCCCCEEECCCCcCCccCc-------cc
Confidence            355665554322  22232 33456788888888875221 22221  23467888888888877654211       12


Q ss_pred             Ccccceecccccc--cc-chhcccccccceeeeccccCc----cceeEeccCcceEEEeeeccccCCCceEEEeCCCcce
Q 043655          217 FPHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCIQL----CGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKV  289 (512)
Q Consensus       217 ~p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l----~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~  289 (512)
                      +++|++|++.++.  .+ ...+..+++|+.|++.++...    ....+...+|+.|.+.++...... ..   ..++|++
T Consensus       122 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~-~~---~~~~L~~  197 (332)
T 2ft3_A          122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP-KD---LPETLNE  197 (332)
T ss_dssp             CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC-SS---SCSSCSC
T ss_pred             cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC-cc---ccCCCCE
Confidence            4788888888775  22 234567888888888887531    111112237788888776433211 11   1268888


Q ss_pred             EEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccccccc
Q 043655          290 LNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFT  367 (512)
Q Consensus       290 L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~  367 (512)
                      |.++++.+...  ..+.++++|+.++++.+...+..        ...+..+++|+.|+++.+.+..+.     .....++
T Consensus       198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~lp-----~~l~~l~  264 (332)
T 2ft3_A          198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE--------NGSLSFLPTLRELHLDNNKLSRVP-----AGLPDLK  264 (332)
T ss_dssp             CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC--------TTGGGGCTTCCEEECCSSCCCBCC-----TTGGGCT
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC--------hhHhhCCCCCCEEECCCCcCeecC-----hhhhcCc
Confidence            88888766443  34677888888888765432211        123567888999999877654322     2345678


Q ss_pred             ccceEEEEeeccC-CcHHHHHH--HHhhCCCCcEEEEEe
Q 043655          368 NLKSLELHTGFNK-HNVQGLAC--LFRSSPSIHTLILKI  403 (512)
Q Consensus       368 ~L~~L~L~~~~~~-~~~~~l~~--~L~~cp~Le~L~l~~  403 (512)
                      +|++|+|..+.-. .....+..  +....+.|+.|.+..
T Consensus       265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~  303 (332)
T 2ft3_A          265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN  303 (332)
T ss_dssp             TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred             cCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence            8999988754211 11111000  011246778887764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.50  E-value=1.3e-07  Score=99.82  Aligned_cols=213  Identities=21%  Similarity=0.071  Sum_probs=112.3

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      .+++.|++..+.  ...+|.   ..++|++|+|++|.. ..++.      .+++|++|+|+++.+..-.        ..+
T Consensus        81 ~~L~~L~Ls~N~--l~~lp~---~l~~L~~L~Ls~N~l-~~l~~------~l~~L~~L~L~~N~l~~lp--------~~l  140 (622)
T 3g06_A           81 PELRTLEVSGNQ--LTSLPV---LPPGLLELSIFSNPL-THLPA------LPSGLCKLWIFGNQLTSLP--------VLP  140 (622)
T ss_dssp             TTCCEEEECSCC--CSCCCC---CCTTCCEEEECSCCC-CCCCC------CCTTCCEEECCSSCCSCCC--------CCC
T ss_pred             CCCCEEEcCCCc--CCcCCC---CCCCCCEEECcCCcC-CCCCC------CCCCcCEEECCCCCCCcCC--------CCC
Confidence            456666665332  234554   457788888877421 12222      4678888888877665421        235


Q ss_pred             cccceeccccccccchhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeecccc
Q 043655          218 PHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAI  297 (512)
Q Consensus       218 p~L~~L~L~~~~~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~  297 (512)
                      ++|++|+|.++. +..+-...++|+.|.+.++. +..+.-..++|+.|.+.++....     +....++|+.|.+.++.+
T Consensus       141 ~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~l  213 (622)
T 3g06_A          141 PGLQELSVSDNQ-LASLPALPSELCKLWAYNNQ-LTSLPMLPSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNRL  213 (622)
T ss_dssp             TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCC
T ss_pred             CCCCEEECcCCc-CCCcCCccCCCCEEECCCCC-CCCCcccCCCCcEEECCCCCCCC-----CCCccchhhEEECcCCcc
Confidence            788888887774 33333345667777777664 22233223667777776654321     111235666666666554


Q ss_pred             CCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEee
Q 043655          298 TASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTG  377 (512)
Q Consensus       298 ~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  377 (512)
                      ....  ..+++|+.++++.+....            +...+++|+.|+++.+.+..+.        +.+++|+.|+|..+
T Consensus       214 ~~l~--~~~~~L~~L~Ls~N~L~~------------lp~~l~~L~~L~Ls~N~L~~lp--------~~~~~L~~L~Ls~N  271 (622)
T 3g06_A          214 TSLP--ALPSGLKELIVSGNRLTS------------LPVLPSELKELMVSGNRLTSLP--------MLPSGLLSLSVYRN  271 (622)
T ss_dssp             SSCC--CCCTTCCEEECCSSCCSC------------CCCCCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSS
T ss_pred             cccC--CCCCCCCEEEccCCccCc------------CCCCCCcCcEEECCCCCCCcCC--------cccccCcEEeCCCC
Confidence            3222  124566666665442211            1134456666666655433211        14456666666543


Q ss_pred             ccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          378 FNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       378 ~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      .-.    .++..+..+|+|+.|+|..
T Consensus       272 ~L~----~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          272 QLT----RLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             CCC----SCCGGGGGSCTTCEEECCS
T ss_pred             CCC----cCCHHHhhccccCEEEecC
Confidence            111    2233355666666666654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.50  E-value=5.1e-08  Score=101.89  Aligned_cols=206  Identities=15%  Similarity=0.138  Sum_probs=132.4

Q ss_pred             ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc---hhc
Q 043655          161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK---QLK  235 (512)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~---~l~  235 (512)
                      ...+|+.|++++|... .+|.  .....+++|++|+|+++.+.+.. .........+|+|+.|+|.++.  ++.   ..+
T Consensus       308 ~~~~L~~L~l~~n~l~-~ip~--~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  383 (549)
T 2z81_A          308 LLEKVKRITVENSKVF-LVPC--SFSQHLKSLEFLDLSENLMVEEY-LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL  383 (549)
T ss_dssp             HSTTCCEEEEESSCCC-CCCH--HHHHHCTTCCEEECCSSCCCHHH-HHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG
T ss_pred             hcccceEEEeccCccc-cCCH--HHHhcCccccEEEccCCcccccc-ccchhhhhccccCcEEEccCCcccccccchhhh
Confidence            3578999999985321 2321  11236899999999998876521 0000001368999999999886  222   346


Q ss_pred             ccccccceeeeccccCccceeE---eccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceee
Q 043655          236 VGCRALEDLTLDNCIQLCGLDI---FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEA  312 (512)
Q Consensus       236 ~~cp~Le~L~l~~c~~l~~~~v---~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l  312 (512)
                      ..+++|+.|++.+|. +..+.-   ..++|+.|.+.++....... .   ..++|++|+++++.+...  ..++++|+.+
T Consensus       384 ~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~-~---~~~~L~~L~Ls~N~l~~~--~~~l~~L~~L  456 (549)
T 2z81_A          384 LTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKT-C---IPQTLEVLDVSNNNLDSF--SLFLPRLQEL  456 (549)
T ss_dssp             GGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSCCSCCCT-T---SCTTCSEEECCSSCCSCC--CCCCTTCCEE
T ss_pred             hcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCCcccccc-h---hcCCceEEECCCCChhhh--cccCChhcEE
Confidence            788999999999985 332221   12789999998875421110 0   126899999999876543  4688999999


Q ss_pred             EEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHH---HHHHH
Q 043655          313 SVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQ---GLACL  389 (512)
Q Consensus       313 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~---~l~~~  389 (512)
                      +++.+....-         .. ...+++++.|+++.+.+.....    .....+++|+.|+|..+...++..   .+..+
T Consensus       457 ~Ls~N~l~~i---------p~-~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~  522 (549)
T 2z81_A          457 YISRNKLKTL---------PD-ASLFPVLLVMKISRNQLKSVPD----GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW  522 (549)
T ss_dssp             ECCSSCCSSC---------CC-GGGCTTCCEEECCSSCCCCCCT----TGGGGCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred             ECCCCccCcC---------CC-cccCccCCEEecCCCccCCcCH----HHHhcCcccCEEEecCCCccCCCccHHHHHHH
Confidence            9987654311         11 2357889999999887544322    234578899999998764444433   34445


Q ss_pred             Hh
Q 043655          390 FR  391 (512)
Q Consensus       390 L~  391 (512)
                      ++
T Consensus       523 l~  524 (549)
T 2z81_A          523 LN  524 (549)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.49  E-value=1.8e-06  Score=90.41  Aligned_cols=63  Identities=19%  Similarity=0.198  Sum_probs=40.5

Q ss_pred             hcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          336 SGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       336 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      ..+++++.|+++.+.+....    +.....+++|+.|+|..+ .-.....++..+..+++|+.|++..
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~  412 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSV----FQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSL  412 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTT----TTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred             cCCCCceEEECCCCccccch----hhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCC
Confidence            56677888888776543211    124456788888888754 2223335566678888999888864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.46  E-value=9.8e-09  Score=99.22  Aligned_cols=13  Identities=31%  Similarity=0.345  Sum_probs=7.1

Q ss_pred             HhhCCCCcEEEEE
Q 043655          390 FRSSPSIHTLILK  402 (512)
Q Consensus       390 L~~cp~Le~L~l~  402 (512)
                      +..+|+|+.|++.
T Consensus       292 ~~~l~~L~~L~L~  304 (312)
T 1wwl_A          292 PDELPQVGNLSLK  304 (312)
T ss_dssp             TTTSCEEEEEECT
T ss_pred             HhhCCCCCEEecc
Confidence            3455666665554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.46  E-value=9.2e-08  Score=90.51  Aligned_cols=97  Identities=19%  Similarity=0.160  Sum_probs=59.1

Q ss_pred             EEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceec
Q 043655          145 IEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLD  224 (512)
Q Consensus       145 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~  224 (512)
                      +.........+|..+  .++|++|+|+++... .+++.  ....+++|++|+|+++.+.+-..  ..+  ..+++|++|+
T Consensus        12 ~~c~~~~l~~ip~~l--~~~l~~L~ls~n~l~-~~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~--~~l~~L~~L~   82 (276)
T 2z62_A           12 YQCMELNFYKIPDNL--PFSTKNLDLSFNPLR-HLGSY--SFFSFPELQVLDLSRCEIQTIED--GAY--QSLSHLSTLI   82 (276)
T ss_dssp             EECTTSCCSSCCSSS--CTTCCEEECTTCCCC-EECTT--TTTTCTTCSEEECTTCCCCEECT--TTT--TTCTTCCEEE
T ss_pred             EEecCCCccccCCCC--CCCccEEECCCCccc-ccCHh--HhccccCCcEEECCCCcCCccCH--HHc--cCCcCCCEEE
Confidence            333333445566644  257889999884221 23321  23468889999998887654211  111  3678888888


Q ss_pred             ccccc--ccc-hhcccccccceeeecccc
Q 043655          225 LDACY--GLK-QLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       225 L~~~~--~l~-~l~~~cp~Le~L~l~~c~  250 (512)
                      |.++.  .+. ..+..+++|+.|++.++.
T Consensus        83 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  111 (276)
T 2z62_A           83 LTGNPIQSLALGAFSGLSSLQKLVAVETN  111 (276)
T ss_dssp             CTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             CCCCccCccChhhhcCCccccEEECCCCC
Confidence            88775  222 345677888888888775

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.46  E-value=5.6e-08  Score=102.28  Aligned_cols=164  Identities=20%  Similarity=0.117  Sum_probs=98.9

Q ss_pred             ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccc
Q 043655          161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGC  238 (512)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~c  238 (512)
                      .++.|+.|.|.+|  .+...+   ....+++|+.|+|+++.+.+...+      ..+++|+.|+|.++.  .+. -+..+
T Consensus        41 ~L~~L~~L~l~~n--~i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~l------~~l~~L~~L~Ls~N~l~~l~-~l~~l  108 (605)
T 1m9s_A           41 ELNSIDQIIANNS--DIKSVQ---GIQYLPNVTKLFLNGNKLTDIKPL------TNLKNLGWLFLDENKIKDLS-SLKDL  108 (605)
T ss_dssp             HHTTCCCCBCTTC--CCCCCT---TGGGCTTCCEEECTTSCCCCCGGG------GGCTTCCEEECCSSCCCCCT-TSTTC
T ss_pred             cCCCCCEEECcCC--CCCCCh---HHccCCCCCEEEeeCCCCCCChhh------ccCCCCCEEECcCCCCCCCh-hhccC
Confidence            4678888888874  232222   134689999999998887764332      368999999998875  333 34578


Q ss_pred             cccceeeeccccCcccee-Ee-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEee
Q 043655          239 RALEDLTLDNCIQLCGLD-IF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGF  316 (512)
Q Consensus       239 p~Le~L~l~~c~~l~~~~-v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~  316 (512)
                      ++|+.|+|.+|... .+. +. .++|+.|.+.+|.....   ...-..++|+.|.++++.+.....+..+++|+.++++.
T Consensus       109 ~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          109 KKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK  184 (605)
T ss_dssp             TTCCEEECTTSCCC-CCGGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCCEEEecCCCCC-CCccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcC
Confidence            88999999888632 221 11 26677777766543211   00113466666666666554444456666666666655


Q ss_pred             EEcccchhHHHHhHHHHHhhcCCcccEeeecchh
Q 043655          317 ILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPC  350 (512)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~  350 (512)
                      +...+-          ..+..+++|+.|+|+.+.
T Consensus       185 N~i~~l----------~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          185 NHISDL----------RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             SCCCBC----------GGGTTCTTCSEEECCSEE
T ss_pred             CCCCCC----------hHHccCCCCCEEEccCCc
Confidence            432211          124556666666666544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.43  E-value=1e-07  Score=102.48  Aligned_cols=71  Identities=15%  Similarity=0.248  Sum_probs=44.7

Q ss_pred             CCcceeccCCccEEEEecccCcc-----ccCC-CccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccc
Q 043655          155 LPRCVITSDSLRVFKLRSRYRGF-----RLPP-SSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDAC  228 (512)
Q Consensus       155 lp~~l~~~~~L~~L~L~~~~~~~-----~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~  228 (512)
                      .|..+..+++|++|+|+++....     .+|. .......+++|++|+|+++.+.+...  ..+  ..+++|+.|++.++
T Consensus       288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~--~~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS--NMF--TGLINLKYLSLSNS  363 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT--TTT--TTCTTCCEEECTTC
T ss_pred             ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh--hHh--ccccCCcEEECCCC
Confidence            34455678999999998743221     1221 01123468999999999988875321  112  36788888888765


Q ss_pred             c
Q 043655          229 Y  229 (512)
Q Consensus       229 ~  229 (512)
                      .
T Consensus       364 ~  364 (680)
T 1ziw_A          364 F  364 (680)
T ss_dssp             B
T ss_pred             c
Confidence            3

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.42  E-value=1e-07  Score=85.29  Aligned_cols=78  Identities=15%  Similarity=0.104  Sum_probs=46.4

Q ss_pred             ccCCccEEEEecccCccc-cCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccc---cchhcc
Q 043655          161 TSDSLRVFKLRSRYRGFR-LPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYG---LKQLKV  236 (512)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~---l~~l~~  236 (512)
                      .+++|++|+|+++  .+. ++    ....+++|++|+|+++.+.....+      ..+|+|++|++.++.-   ....+.
T Consensus        42 ~l~~L~~L~l~~n--~i~~l~----~l~~l~~L~~L~l~~n~~~~~~~l------~~l~~L~~L~l~~n~l~~~~~~~l~  109 (197)
T 4ezg_A           42 QMNSLTYITLANI--NVTDLT----GIEYAHNIKDLTINNIHATNYNPI------SGLSNLERLRIMGKDVTSDKIPNLS  109 (197)
T ss_dssp             HHHTCCEEEEESS--CCSCCT----TGGGCTTCSEEEEESCCCSCCGGG------TTCTTCCEEEEECTTCBGGGSCCCT
T ss_pred             hcCCccEEeccCC--CccChH----HHhcCCCCCEEEccCCCCCcchhh------hcCCCCCEEEeECCccCcccChhhc
Confidence            4678888998874  232 22    134678888888888755443222      3567777777766541   122234


Q ss_pred             cccccceeeecccc
Q 043655          237 GCRALEDLTLDNCI  250 (512)
Q Consensus       237 ~cp~Le~L~l~~c~  250 (512)
                      .+++|+.|++.+|.
T Consensus       110 ~l~~L~~L~Ls~n~  123 (197)
T 4ezg_A          110 GLTSLTLLDISHSA  123 (197)
T ss_dssp             TCTTCCEEECCSSB
T ss_pred             CCCCCCEEEecCCc
Confidence            55666666666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.42  E-value=3.7e-07  Score=87.02  Aligned_cols=99  Identities=16%  Similarity=0.122  Sum_probs=59.4

Q ss_pred             CCCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccc
Q 043655          284 ASKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFT  361 (512)
Q Consensus       284 ~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~  361 (512)
                      .++|++|.++++.+...  ..+..+++|+.++++......-.        ...+..+++|+.|+++.+.++.+..     
T Consensus       123 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~--------~~~~~~l~~L~~L~L~~N~l~~ip~-----  189 (290)
T 1p9a_G          123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP--------AGLLNGLENLDTLLLQENSLYTIPK-----  189 (290)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC--------TTTTTTCTTCCEEECCSSCCCCCCT-----
T ss_pred             CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC--------HHHhcCcCCCCEEECCCCcCCccCh-----
Confidence            46777777777655432  23456778888777654332110        1235677888999988877654332     


Q ss_pred             ccccccccceEEEEeecc--CCcHHHHHHHHhhCCC
Q 043655          362 NLHTFTNLKSLELHTGFN--KHNVQGLACLFRSSPS  395 (512)
Q Consensus       362 ~~~~~~~L~~L~L~~~~~--~~~~~~l~~~L~~cp~  395 (512)
                      ......+|++|.|.....  .++..++..+++.-+.
T Consensus       190 ~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~~  225 (290)
T 1p9a_G          190 GFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE  225 (290)
T ss_dssp             TTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGG
T ss_pred             hhcccccCCeEEeCCCCccCcCccHHHHHHHHhCcc
Confidence            333556889998876432  2445566666665443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.42  E-value=5.3e-07  Score=86.87  Aligned_cols=152  Identities=20%  Similarity=0.144  Sum_probs=88.1

Q ss_pred             eeeeEEee-ccCcchhhHHHHHHHhcCCceeEEEeccCCCCCCCcce--eccCCccEEEEecccCccccCCC-ccccccC
Q 043655          114 IRVLRFRA-HLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCV--ITSDSLRVFKLRSRYRGFRLPPS-SVVAGGF  189 (512)
Q Consensus       114 i~~l~l~~-~~~~~~~~~wi~~~~~~~v~~L~l~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~~~~~~~~-~~~~~~~  189 (512)
                      ++.+.+.. ......+...........+++|++....-. ...|..+  ..+++|++|+|++|......+.. ......+
T Consensus        66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKIT-GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCB-SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEec-cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            55555543 223334555555555567999988744321 2344444  56888999999985322111110 0112358


Q ss_pred             cccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccc-----cc--hhcccccccceeeeccccCcccee-----E
Q 043655          190 RSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYG-----LK--QLKVGCRALEDLTLDNCIQLCGLD-----I  257 (512)
Q Consensus       190 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~-----l~--~l~~~cp~Le~L~l~~c~~l~~~~-----v  257 (512)
                      ++|++|+|+++.+....  ...+  ..+++|++|+|.++.-     +.  .....+++|++|++.+|.. ..+.     +
T Consensus       145 ~~L~~L~Ls~n~l~~~~--~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l  219 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFS--CEQV--RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAAL  219 (310)
T ss_dssp             SCCCEEEEECCSSCCCC--TTSC--CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHH
T ss_pred             cCCCEEEeeCCCcchhh--HHHh--ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHH
Confidence            89999999988875421  1111  3688999999988862     11  1224678899999988853 2211     0


Q ss_pred             --eccCcceEEEeeec
Q 043655          258 --FGTKLERLRVASCF  271 (512)
Q Consensus       258 --~~~~L~~L~l~~c~  271 (512)
                        ..++|++|.+.++.
T Consensus       220 ~~~l~~L~~L~Ls~N~  235 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNS  235 (310)
T ss_dssp             HHHTCCCSSEECTTSC
T ss_pred             HhcCCCCCEEECCCCC
Confidence              12566666666653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.39  E-value=2.5e-07  Score=82.75  Aligned_cols=103  Identities=11%  Similarity=0.087  Sum_probs=73.9

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC--ccchhhhhcCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN--QPCLLDLFTDS  215 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~l~~l~~~~  215 (512)
                      ..++.|++....  ...+| .+..+++|++|+|++|  .+..++   ....+++|++|+|+++.+.+  ...+      .
T Consensus        44 ~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~l~~n--~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l------~  109 (197)
T 4ezg_A           44 NSLTYITLANIN--VTDLT-GIEYAHNIKDLTINNI--HATNYN---PISGLSNLERLRIMGKDVTSDKIPNL------S  109 (197)
T ss_dssp             HTCCEEEEESSC--CSCCT-TGGGCTTCSEEEEESC--CCSCCG---GGTTCTTCCEEEEECTTCBGGGSCCC------T
T ss_pred             CCccEEeccCCC--ccChH-HHhcCCCCCEEEccCC--CCCcch---hhhcCCCCCEEEeECCccCcccChhh------c
Confidence            578888887543  23556 4667899999999995  333222   23469999999999988865  2222      4


Q ss_pred             CCcccceeccccccc---cchhcccccccceeeeccccCccc
Q 043655          216 SFPHLKKLDLDACYG---LKQLKVGCRALEDLTLDNCIQLCG  254 (512)
Q Consensus       216 ~~p~L~~L~L~~~~~---l~~l~~~cp~Le~L~l~~c~~l~~  254 (512)
                      .+|+|+.|++.++.-   ....+..+++|+.|++.+|..+..
T Consensus       110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~  151 (197)
T 4ezg_A          110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD  151 (197)
T ss_dssp             TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC
T ss_pred             CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc
Confidence            789999999999862   234456789999999999874443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.39  E-value=6.2e-07  Score=93.98  Aligned_cols=83  Identities=16%  Similarity=0.139  Sum_probs=46.5

Q ss_pred             CCCcceEEeeccccCC--CccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhh-hcccccc
Q 043655          284 ASKLKVLNWEYNAITA--SSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEI-LSNRNYF  360 (512)
Q Consensus       284 ~p~L~~L~~~~~~~~~--~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~-~~~~~~~  360 (512)
                      .++|++|.++++.+..  ...++++++|+.++++.+...+      .......+..+++++.|+++.+.+.. +..    
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~----  421 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN------FFKVALMTKNMSSLETLDVSLNSLNSHAYD----  421 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB------TTHHHHTTTTCTTCCEEECTTSCCBSCCSS----
T ss_pred             CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC------cccchhhhcCCCCCCEEECCCCcCCCccCh----
Confidence            4567777776665543  1345667777777776543321      11233456777888888887765433 111    


Q ss_pred             cccccccccceEEEEe
Q 043655          361 TNLHTFTNLKSLELHT  376 (512)
Q Consensus       361 ~~~~~~~~L~~L~L~~  376 (512)
                      .....+++|++|+|+.
T Consensus       422 ~~~~~l~~L~~L~l~~  437 (562)
T 3a79_B          422 RTCAWAESILVLNLSS  437 (562)
T ss_dssp             CCCCCCTTCCEEECCS
T ss_pred             hhhcCcccCCEEECCC
Confidence            1233455666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.38  E-value=7.5e-07  Score=84.95  Aligned_cols=98  Identities=16%  Similarity=0.145  Sum_probs=68.4

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      ..++.|++....  ...++. +..+++|++|+|++|... .+++    ...+++|+.|+|+++.+.+...+      ..+
T Consensus        46 ~~L~~L~l~~~~--i~~~~~-~~~l~~L~~L~L~~n~l~-~~~~----l~~l~~L~~L~l~~n~l~~~~~l------~~l  111 (291)
T 1h6t_A           46 NSIDQIIANNSD--IKSVQG-IQYLPNVTKLFLNGNKLT-DIKP----LANLKNLGWLFLDENKVKDLSSL------KDL  111 (291)
T ss_dssp             HTCCEEECTTSC--CCCCTT-GGGCTTCCEEECCSSCCC-CCGG----GTTCTTCCEEECCSSCCCCGGGG------TTC
T ss_pred             CcccEEEccCCC--cccChh-HhcCCCCCEEEccCCccC-CCcc----cccCCCCCEEECCCCcCCCChhh------ccC
Confidence            456666665332  223443 556899999999985221 2222    45799999999999988764433      478


Q ss_pred             cccceecccccc--ccchhcccccccceeeecccc
Q 043655          218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~  250 (512)
                      ++|+.|+|.++.  .+. -+..+++|+.|++.+|.
T Consensus       112 ~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~  145 (291)
T 1h6t_A          112 KKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK  145 (291)
T ss_dssp             TTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc
Confidence            999999999886  443 34578999999998885

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.37  E-value=6.8e-07  Score=92.66  Aligned_cols=243  Identities=15%  Similarity=0.126  Sum_probs=126.3

Q ss_pred             cCceeeeEEeec-cCcchhhHHHHHHHhcCCceeEEEeccCCCCCCCcce-----eccCCccEEEEecccCccccCCCcc
Q 043655          111 HSYIRVLRFRAH-LSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCV-----ITSDSLRVFKLRSRYRGFRLPPSSV  184 (512)
Q Consensus       111 ~~~i~~l~l~~~-~~~~~~~~wi~~~~~~~v~~L~l~~~~~~~~~lp~~l-----~~~~~L~~L~L~~~~~~~~~~~~~~  184 (512)
                      .+.++.+.+... .....+..+........++.|++....-. ..+|..+     ..+++|+.+++.++.  +.+|...+
T Consensus       219 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~~~~~~l~~L~~l~l~~n~--~~~p~~~~  295 (520)
T 2z7x_B          219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ-GQLDFRDFDYSGTSLKALSIHQVVSDV--FGFPQSYI  295 (520)
T ss_dssp             CTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEE-SCCCCCCCCCCSCCCCEEEEEEEEECC--CCSCTHHH
T ss_pred             ccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccccc-CccccchhhcccccCceeEeccccccc--eecchhhh
Confidence            345777766542 22233444444444468888888754311 1456655     457788888888742  34442111


Q ss_pred             ccc--cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--c-cchhcccccccceeeeccccCcc--cee-
Q 043655          185 VAG--GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--G-LKQLKVGCRALEDLTLDNCIQLC--GLD-  256 (512)
Q Consensus       185 ~~~--~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~-l~~l~~~cp~Le~L~l~~c~~l~--~~~-  256 (512)
                       ..  .-++|+.|+++++.+.+....      ..+++|++|++.++.  + +...+..+++|++|++.+|....  .+. 
T Consensus       296 -~~~~~~~~L~~L~l~~n~l~~~~~~------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~  368 (520)
T 2z7x_B          296 -YEIFSNMNIKNFTVSGTRMVHMLCP------SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE  368 (520)
T ss_dssp             -HHHHHTCCCSEEEEESSCCCCCCCC------SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH
T ss_pred             -hcccccCceeEEEcCCCccccccch------hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchH
Confidence             00  114588888887766543211      367888888888775  1 23344567888888888775321  110 


Q ss_pred             -E-eccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCc-ccceeeEEeeEEcccchhHHHHhHHHH
Q 043655          257 -I-FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENL-ASLHEASVGFILLHEDLTSAKLQSVSN  333 (512)
Q Consensus       257 -v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~  333 (512)
                       + ..++|+.|.+.++..............++|++|.++++.+.... ...+ ++|+.++++.+....         +..
T Consensus       369 ~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~~L~~L~Ls~N~l~~---------ip~  438 (520)
T 2z7x_B          369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-FRCLPPRIKVLDLHSNKIKS---------IPK  438 (520)
T ss_dssp             HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG-GGSCCTTCCEEECCSSCCCC---------CCG
T ss_pred             HHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch-hhhhcccCCEEECCCCcccc---------cch
Confidence             1 12567777776654321011111123466777776665543221 1112 466666665543221         111


Q ss_pred             HhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEee
Q 043655          334 FLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTG  377 (512)
Q Consensus       334 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  377 (512)
                      .+..+++|+.|+++.+.+..+..    .....+++|+.|+|..+
T Consensus       439 ~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          439 QVVKLEALQELNVASNQLKSVPD----GIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS
T ss_pred             hhhcCCCCCEEECCCCcCCccCH----HHhccCCcccEEECcCC
Confidence            23356666677766665432221    12345566666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.33  E-value=2.7e-07  Score=86.96  Aligned_cols=192  Identities=20%  Similarity=0.191  Sum_probs=118.0

Q ss_pred             CccEEEEecccCccc-cCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhccccc
Q 043655          164 SLRVFKLRSRYRGFR-LPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKVGCR  239 (512)
Q Consensus       164 ~L~~L~L~~~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~~cp  239 (512)
                      +++.++++++  .++ +|. .    -.++|++|+|+++.+..-..  ..+  ..+++|++|+|.++.  .+. .++..++
T Consensus        17 ~~~~l~~~~~--~l~~ip~-~----~~~~l~~L~l~~n~l~~~~~--~~~--~~l~~L~~L~l~~n~l~~i~~~~~~~l~   85 (270)
T 2o6q_A           17 NKNSVDCSSK--KLTAIPS-N----IPADTKKLDLQSNKLSSLPS--KAF--HRLTKLRLLYLNDNKLQTLPAGIFKELK   85 (270)
T ss_dssp             TTTEEECTTS--CCSSCCS-C----CCTTCSEEECCSSCCSCCCT--TSS--SSCTTCCEEECCSSCCSCCCTTTTSSCT
T ss_pred             CCCEEEccCC--CCCccCC-C----CCCCCCEEECcCCCCCeeCH--HHh--cCCCCCCEEECCCCccCeeChhhhcCCC
Confidence            4677887763  232 332 1    13579999999887765321  011  367888888888765  222 3345678


Q ss_pred             ccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccceeeEEeeE
Q 043655          240 ALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLHEASVGFI  317 (512)
Q Consensus       240 ~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~  317 (512)
                      +|+.|++.++.. ..+...                     .....++|++|.++++.+...  ..+.++++|+.++++.+
T Consensus        86 ~L~~L~l~~n~l-~~~~~~---------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A           86 NLETLWVTDNKL-QALPIG---------------------VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             TCCEEECCSSCC-CCCCTT---------------------TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEECCCCcC-CcCCHh---------------------HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence            888888877642 111100                     001246777777777655433  23678999999999876


Q ss_pred             EcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCc
Q 043655          318 LLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIH  397 (512)
Q Consensus       318 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le  397 (512)
                      ......        ...+..+++|+.|+++.+.+..+..    .....+++|++|+|..+.-. .  .....+..+++|+
T Consensus       144 ~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~-~--~~~~~~~~l~~L~  208 (270)
T 2o6q_A          144 ELQSLP--------KGVFDKLTSLKELRLYNNQLKRVPE----GAFDKLTELKTLKLDNNQLK-R--VPEGAFDSLEKLK  208 (270)
T ss_dssp             CCCCCC--------TTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCCS-C--CCTTTTTTCTTCC
T ss_pred             cCCccC--------HhHccCCcccceeEecCCcCcEeCh----hHhccCCCcCEEECCCCcCC-c--CCHHHhccccCCC
Confidence            543211        1236778999999998876544322    23456789999999764221 1  1123467899999


Q ss_pred             EEEEEe
Q 043655          398 TLILKI  403 (512)
Q Consensus       398 ~L~l~~  403 (512)
                      .|.+..
T Consensus       209 ~L~l~~  214 (270)
T 2o6q_A          209 MLQLQE  214 (270)
T ss_dssp             EEECCS
T ss_pred             EEEecC
Confidence            998864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.31  E-value=7.1e-07  Score=86.03  Aligned_cols=195  Identities=19%  Similarity=0.192  Sum_probs=127.0

Q ss_pred             hcCCceeEEEeccCCCCCCCcce--eccCCccEEEEecccCccccCCCccccccC-----cccceEEeeeEEeeCccchh
Q 043655          137 RHNVEELDIEVATDDYFNLPRCV--ITSDSLRVFKLRSRYRGFRLPPSSVVAGGF-----RSLHTLSLSLVILFNQPCLL  209 (512)
Q Consensus       137 ~~~v~~L~l~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~~l~  209 (512)
                      -.++++|++....-. ..+|..+  ..+++|++|+|++|.  +.-.+..  ...+     ++|++|+|+++.+.+...  
T Consensus        94 l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~--~~~l~~~~~~~L~~L~L~~N~l~~~~~--  166 (312)
T 1wwl_A           94 ISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNLRNVS--WATRDAW--LAELQQWLKPGLKVLSIAQAHSLNFSC--  166 (312)
T ss_dssp             TSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEEESCB--CSSSSSH--HHHHHTTCCTTCCEEEEESCSCCCCCT--
T ss_pred             cCCccEEEccCCccc-chhHHHHHHhcCCCccEEEccCCC--CcchhHH--HHHHHHhhcCCCcEEEeeCCCCccchH--
Confidence            368999998855421 2456655  468999999999953  2221211  1233     899999999998865321  


Q ss_pred             hhhcCCCCcccceeccccccccc------hh-cccccccceeeeccccCcc--ceeE----eccCcceEEEeeeccccCC
Q 043655          210 DLFTDSSFPHLKKLDLDACYGLK------QL-KVGCRALEDLTLDNCIQLC--GLDI----FGTKLERLRVASCFDAYCD  276 (512)
Q Consensus       210 ~l~~~~~~p~L~~L~L~~~~~l~------~l-~~~cp~Le~L~l~~c~~l~--~~~v----~~~~L~~L~l~~c~~~~~~  276 (512)
                      ..+  ..+++|++|+|.++.-..      .+ ...+++|++|++.+|.--.  .+..    ..++|+.|.+.++......
T Consensus       167 ~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          167 EQV--RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             TTC--CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             HHh--ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence            111  478999999999986211      11 2678999999999996321  1111    1279999999987543221


Q ss_pred             CceEEEeCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhh
Q 043655          277 KSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCI  351 (512)
Q Consensus       277 ~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~  351 (512)
                      ........++|++|.++++.+..... .-.++|+.++++.....+.         .. +..+++++.|+++.+.+
T Consensus       245 ~~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~~L~~L~Ls~N~l~~~---------p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          245 GAPSCDWPSQLNSLNLSFTGLKQVPK-GLPAKLSVLDLSYNRLDRN---------PS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             CCSCCCCCTTCCEEECTTSCCSSCCS-SCCSEEEEEECCSSCCCSC---------CC-TTTSCEEEEEECTTCTT
T ss_pred             chhhhhhcCCCCEEECCCCccChhhh-hccCCceEEECCCCCCCCC---------hh-HhhCCCCCEEeccCCCC
Confidence            11122246899999999987753321 1127899999986654321         11 66789999999987754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.31  E-value=2e-07  Score=88.10  Aligned_cols=173  Identities=17%  Similarity=0.118  Sum_probs=112.2

Q ss_pred             ccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccccccceeeeccccCccceeEeccCcce
Q 043655          187 GGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLER  264 (512)
Q Consensus       187 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~  264 (512)
                      ..+++|+.|.+.++.+.....+      ..+|+|+.|+|.++.  ++. -+..+++|+.|++.+|.. ..+...      
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~l------~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l-~~~~~~------  103 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQGI------QYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQL-QSLPNG------  103 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTG------GGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCC-CCCCTT------
T ss_pred             ccccceeeeeeCCCCccccccc------ccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCcc-CccChh------
Confidence            3588899999988877654433      357888888888775  332 345677888888877742 111100      


Q ss_pred             EEEeeeccccCCCceEEEeCCCcceEEeeccccCCCc--cccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCccc
Q 043655          265 LRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASS--SLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHAR  342 (512)
Q Consensus       265 L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~--~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~  342 (512)
                                     ..-..++|++|.+.++.+....  .+.++++|+.+++..+...+-.        ...+..+++|+
T Consensus       104 ---------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~  160 (272)
T 3rfs_A          104 ---------------VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP--------KGVFDKLTNLT  160 (272)
T ss_dssp             ---------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------TTTTTTCTTCC
T ss_pred             ---------------HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC--------HHHhccCccCC
Confidence                           0012467777777776654332  3678999999999876543211        12467789999


Q ss_pred             EeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          343 SLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       343 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      .|+++.+.+..+..    .....+++|++|+|..+.-..   .....+..+++|+.|++..
T Consensus       161 ~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          161 ELDLSYNQLQSLPE----GVFDKLTQLKDLRLYQNQLKS---VPDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             EEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSC---CCTTTTTTCTTCCEEECCS
T ss_pred             EEECCCCCcCccCH----HHhcCCccCCEEECCCCcCCc---cCHHHHhCCcCCCEEEccC
Confidence            99999886543221    234577899999997642221   1124567899999999975

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.30  E-value=5e-07  Score=95.03  Aligned_cols=163  Identities=17%  Similarity=0.101  Sum_probs=109.4

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      ..++.|.+....  ...+| .+..+++|+.|+|++|... .+++    ...+++|+.|+|+++.+.+...+      ..+
T Consensus        43 ~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~Ls~N~l~-~~~~----l~~l~~L~~L~Ls~N~l~~l~~l------~~l  108 (605)
T 1m9s_A           43 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLT-DIKP----LTNLKNLGWLFLDENKIKDLSSL------KDL  108 (605)
T ss_dssp             TTCCCCBCTTCC--CCCCT-TGGGCTTCCEEECTTSCCC-CCGG----GGGCTTCCEEECCSSCCCCCTTS------TTC
T ss_pred             CCCCEEECcCCC--CCCCh-HHccCCCCCEEEeeCCCCC-CChh----hccCCCCCEEECcCCCCCCChhh------ccC
Confidence            456666654322  22333 3556888999999885211 2222    34688999999998887764332      468


Q ss_pred             cccceecccccc--ccchhcccccccceeeeccccCcccee-Ee-ccCcceEEEeeeccccCCCceEEEeCCCcceEEee
Q 043655          218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLD-IF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWE  293 (512)
Q Consensus       218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~-v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~  293 (512)
                      ++|+.|+|.++.  .+.. +..+++|+.|+|.+|.. ..+. +. .++|+.|.+.+|......  . ....++|+.|.++
T Consensus       109 ~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          109 KKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKI-TDITVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLS  183 (605)
T ss_dssp             TTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCC-CCCGGGGSCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECC
T ss_pred             CCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCcc-CCchhhcccCCCCEEECcCCcCCCch--h-hccCCCCCEEECc
Confidence            899999998876  4432 45788999999988853 2221 11 278899988887543211  1 1257889999999


Q ss_pred             ccccCCCccccCcccceeeEEeeEEc
Q 043655          294 YNAITASSSLENLASLHEASVGFILL  319 (512)
Q Consensus       294 ~~~~~~~~~l~~~~~L~~l~l~~~~~  319 (512)
                      ++.+.....+..+++|+.++++.+..
T Consensus       184 ~N~i~~l~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          184 KNHISDLRALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             SSCCCBCGGGTTCTTCSEEECCSEEE
T ss_pred             CCCCCCChHHccCCCCCEEEccCCcC
Confidence            88776666678889999999887654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.30  E-value=7.9e-07  Score=85.61  Aligned_cols=169  Identities=14%  Similarity=0.121  Sum_probs=100.8

Q ss_pred             cCCceeEEEeccCCCCCCC----cceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhc
Q 043655          138 HNVEELDIEVATDDYFNLP----RCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFT  213 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp----~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~  213 (512)
                      ..++.|++....-.. ..|    ..+..+++|++|+|++|.. ..+++.  ....+++|++|+|+++.+.+..++.....
T Consensus       117 ~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  192 (310)
T 4glp_A          117 LALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCE--QVRAFPALTSLDLSDNPGLGERGLMAALC  192 (310)
T ss_dssp             BCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTT--SCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred             CCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCc-chhhHH--HhccCCCCCEEECCCCCCccchhhhHHHh
Confidence            678888888543211 111    2233688999999999532 123322  23478999999999998654322221111


Q ss_pred             CCCCcccceecccccc--ccch----hcccccccceeeeccccCcccee--Eec----cCcceEEEeeeccccCCCceEE
Q 043655          214 DSSFPHLKKLDLDACY--GLKQ----LKVGCRALEDLTLDNCIQLCGLD--IFG----TKLERLRVASCFDAYCDKSWVK  281 (512)
Q Consensus       214 ~~~~p~L~~L~L~~~~--~l~~----l~~~cp~Le~L~l~~c~~l~~~~--v~~----~~L~~L~l~~c~~~~~~~~~~~  281 (512)
                      ...+|+|++|+|.++.  .+..    +...+++|+.|+|.++.-.....  +..    ++|++|.+.++..... ...+ 
T Consensus       193 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~-  270 (310)
T 4glp_A          193 PHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGL-  270 (310)
T ss_dssp             TTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCC-
T ss_pred             hhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhh-
Confidence            1468999999999986  2333    35678999999999986322211  111    5788888877644311 1111 


Q ss_pred             EeCCCcceEEeeccccCCCccccCcccceeeEE
Q 043655          282 IDASKLKVLNWEYNAITASSSLENLASLHEASV  314 (512)
Q Consensus       282 i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l  314 (512)
                        .++|+.|+++++.+.....+..+++|+.+++
T Consensus       271 --~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L  301 (310)
T 4glp_A          271 --PAKLRVLDLSSNRLNRAPQPDELPEVDNLTL  301 (310)
T ss_dssp             --CSCCSCEECCSCCCCSCCCTTSCCCCSCEEC
T ss_pred             --cCCCCEEECCCCcCCCCchhhhCCCccEEEC
Confidence              2677777777665543222344444444444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.27  E-value=2.1e-07  Score=88.06  Aligned_cols=196  Identities=22%  Similarity=0.152  Sum_probs=122.8

Q ss_pred             CcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhcccccccceeeeccccCcccee---E-eccC
Q 043655          189 FRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNCIQLCGLD---I-FGTK  261 (512)
Q Consensus       189 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~~l~~~~---v-~~~~  261 (512)
                      .++|++|+|+++.+.+...  ..+  ..+++|+.|+|.++.  .+. ..+..+++|+.|++.++.. ..+.   + ..++
T Consensus        27 ~~~l~~L~ls~n~l~~~~~--~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~  101 (276)
T 2z62_A           27 PFSTKNLDLSFNPLRHLGS--YSF--FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSS  101 (276)
T ss_dssp             CTTCCEEECTTCCCCEECT--TTT--TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTT
T ss_pred             CCCccEEECCCCcccccCH--hHh--ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc-CccChhhhcCCcc
Confidence            3579999999988765321  011  478999999999985  222 2456789999999999863 2222   1 1278


Q ss_pred             cceEEEeeeccccCCCceEEEeCCCcceEEeeccccCC---CccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcC
Q 043655          262 LERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITA---SSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGL  338 (512)
Q Consensus       262 L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~---~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l  338 (512)
                      |+.|.+.++......... ....++|++|.++++.+..   ...+.++++|+.++++.+...+...     ....-+..+
T Consensus       102 L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L  175 (276)
T 2z62_A          102 LQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-----TDLRVLHQM  175 (276)
T ss_dssp             CCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-----GGGHHHHTC
T ss_pred             ccEEECCCCCccccCchh-cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH-----HHhhhhhhc
Confidence            999999887543221111 1256899999999887654   2357788999999998765432110     001123334


Q ss_pred             Cccc-EeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          339 SHAR-SLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       339 ~~l~-~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      +.+. .|+++...+..+..     ......+|++|+|..+.-. .  ....++..+++|++|++..
T Consensus       176 ~~l~l~L~ls~n~l~~~~~-----~~~~~~~L~~L~L~~n~l~-~--~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          176 PLLNLSLDLSLNPMNFIQP-----GAFKEIRLKELALDTNQLK-S--VPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             TTCCEEEECCSSCCCEECT-----TSSCSCCEEEEECCSSCCS-C--CCTTTTTTCCSCCEEECCS
T ss_pred             cccceeeecCCCcccccCc-----cccCCCcccEEECCCCcee-e--cCHhHhcccccccEEEccC
Confidence            4333 77787766443321     1123348999999764221 1  1124567899999999864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.21  E-value=8.4e-07  Score=87.03  Aligned_cols=230  Identities=15%  Similarity=0.127  Sum_probs=129.5

Q ss_pred             EEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC---ccchhhhhcCCCCcccc
Q 043655          145 IEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN---QPCLLDLFTDSSFPHLK  221 (512)
Q Consensus       145 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---~~~l~~l~~~~~~p~L~  221 (512)
                      +.........+|..+  .+++++|+|+++.. -.+++..  ..++++|++|+|+++.+.+   ...+      .++++|+
T Consensus        14 v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i-~~i~~~~--f~~l~~L~~L~Ls~N~i~~~i~~~~f------~~L~~l~   82 (350)
T 4ay9_X           14 FLCQESKVTEIPSDL--PRNAIELRFVLTKL-RVIQKGA--FSGFGDLEKIEISQNDVLEVIEADVF------SNLPKLH   82 (350)
T ss_dssp             EEEESTTCCSCCTTC--CTTCSEEEEESCCC-SEECTTS--STTCTTCCEEEEECCTTCCEECTTSB------CSCTTCC
T ss_pred             EEecCCCCCccCcCc--CCCCCEEEccCCcC-CCcCHHH--HcCCCCCCEEECcCCCCCCccChhHh------hcchhhh
Confidence            333344455677665  36789999998532 2344332  3578999999999886543   2122      3677777


Q ss_pred             eeccccccccc----hhcccccccceeeeccccCccce---eEeccCcceEEEeeeccccC-CCceEEEeCCCcceEEee
Q 043655          222 KLDLDACYGLK----QLKVGCRALEDLTLDNCIQLCGL---DIFGTKLERLRVASCFDAYC-DKSWVKIDASKLKVLNWE  293 (512)
Q Consensus       222 ~L~L~~~~~l~----~l~~~cp~Le~L~l~~c~~l~~~---~v~~~~L~~L~l~~c~~~~~-~~~~~~i~~p~L~~L~~~  293 (512)
                      ++...++..+.    ..+..+++|+.|++.++......   .....++..|.+.++..... ....+.-....++.|.++
T Consensus        83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~  162 (350)
T 4ay9_X           83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN  162 (350)
T ss_dssp             EEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred             hhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence            76665554333    34567899999999988532211   12235666677765432210 000000112457778888


Q ss_pred             ccccCCC-ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceE
Q 043655          294 YNAITAS-SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSL  372 (512)
Q Consensus       294 ~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L  372 (512)
                      ++.+... .......+|.++.+..+...+...       ...+..+++|+.|+++.+.++.+..       ..|.+|++|
T Consensus       163 ~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~-------~~~f~~l~~L~~LdLs~N~l~~lp~-------~~~~~L~~L  228 (350)
T 4ay9_X          163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEELP-------NDVFHGASGPVILDISRTRIHSLPS-------YGLENLKKL  228 (350)
T ss_dssp             SSCCCEECTTSSTTEEEEEEECTTCTTCCCCC-------TTTTTTEECCSEEECTTSCCCCCCS-------SSCTTCCEE
T ss_pred             cccccCCChhhccccchhHHhhccCCcccCCC-------HHHhccCcccchhhcCCCCcCccCh-------hhhccchHh
Confidence            7665322 112234567777664322111110       1246788999999999887554432       246678887


Q ss_pred             EEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          373 ELHTGFNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       373 ~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      .+.....-.   .++. +..+++|+.+++..
T Consensus       229 ~~l~~~~l~---~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          229 RARSTYNLK---KLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             ECTTCTTCC---CCCC-TTTCCSCCEEECSC
T ss_pred             hhccCCCcC---cCCC-chhCcChhhCcCCC
Confidence            764432111   1221 56788888888753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.19  E-value=2.9e-06  Score=79.57  Aligned_cols=39  Identities=15%  Similarity=0.093  Sum_probs=21.9

Q ss_pred             ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC
Q 043655          161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN  204 (512)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  204 (512)
                      .+++|++|+|++|  .+.-.+   ....+++|++|+|+++.+.+
T Consensus        39 ~l~~L~~L~l~~n--~i~~l~---~l~~l~~L~~L~L~~N~i~~   77 (263)
T 1xeu_A           39 ELSGVQNFNGDNS--NIQSLA---GMQFFTNLKELHLSHNQISD   77 (263)
T ss_dssp             HHTTCSEEECTTS--CCCCCT---TGGGCTTCCEEECCSSCCCC
T ss_pred             hcCcCcEEECcCC--Ccccch---HHhhCCCCCEEECCCCccCC
Confidence            4667777777763  222111   12356677777776666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.16  E-value=1.1e-06  Score=83.88  Aligned_cols=177  Identities=18%  Similarity=0.072  Sum_probs=96.0

Q ss_pred             CCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--
Q 043655          152 YFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--  229 (512)
Q Consensus       152 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--  229 (512)
                      ...+|..+.  ++++.|+|++|... .+++.  ....+++|++|+|+++.+..-...      ..+++|+.|+|.++.  
T Consensus        22 l~~ip~~~~--~~l~~L~L~~N~l~-~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~------~~l~~L~~L~Ls~N~l~   90 (290)
T 1p9a_G           22 LTALPPDLP--KDTTILHLSENLLY-TFSLA--TLMPYTRLTQLNLDRAELTKLQVD------GTLPVLGTLDLSHNQLQ   90 (290)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSCCS-EEEGG--GGTTCTTCCEEECTTSCCCEEECC------SCCTTCCEEECCSSCCS
T ss_pred             CCcCCCCCC--CCCCEEEcCCCcCC-ccCHH--HhhcCCCCCEEECCCCccCcccCC------CCCCcCCEEECCCCcCC
Confidence            344554443  56777777764221 12111  123577777777777665542211      357777777777664  


Q ss_pred             ccchhcccccccceeeeccccCcccee---Ee-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccc
Q 043655          230 GLKQLKVGCRALEDLTLDNCIQLCGLD---IF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSL  303 (512)
Q Consensus       230 ~l~~l~~~cp~Le~L~l~~c~~l~~~~---v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l  303 (512)
                      .+...+..+++|+.|++.++.. ..+.   +. .++|+.|.+.++...... ..+.-..++|+.|.++++.+...  ..+
T Consensus        91 ~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~  168 (290)
T 1p9a_G           91 SLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLL  168 (290)
T ss_dssp             SCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCTTTT
T ss_pred             cCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCcCCccCHHHh
Confidence            3444445667777777777642 2221   11 256777777765432111 00011356788888877765433  224


Q ss_pred             cCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchh
Q 043655          304 ENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPC  350 (512)
Q Consensus       304 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~  350 (512)
                      ..+++|+.++++......         +...+...++++.|.+.++.
T Consensus       169 ~~l~~L~~L~L~~N~l~~---------ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          169 NGLENLDTLLLQENSLYT---------IPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TTCTTCCEEECCSSCCCC---------CCTTTTTTCCCSEEECCSCC
T ss_pred             cCcCCCCEEECCCCcCCc---------cChhhcccccCCeEEeCCCC
Confidence            567788888776543321         11123344567777776543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.13  E-value=1.7e-06  Score=79.84  Aligned_cols=187  Identities=12%  Similarity=0.099  Sum_probs=103.2

Q ss_pred             CCccEEEEecccCccccCCCccccccCcccceEEeeeEE-eeC--ccchhhhhcCCCCcccceeccccccccc----hhc
Q 043655          163 DSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVI-LFN--QPCLLDLFTDSSFPHLKKLDLDACYGLK----QLK  235 (512)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~--~~~l~~l~~~~~~p~L~~L~L~~~~~l~----~l~  235 (512)
                      ++|++|+|+++.. -.+++..  ..++++|++|+|+++. +..  ...+      ..+++|+.|++.+|..+.    ..+
T Consensus        31 ~~l~~L~l~~n~l-~~i~~~~--~~~l~~L~~L~l~~n~~l~~i~~~~f------~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           31 PSTQTLKLIETHL-RTIPSHA--FSNLPNISRIYVSIDVTLQQLESHSF------YNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             TTCCEEEEESCCC-SEECTTT--TTTCTTCCEEEEECCSSCCEECTTTE------ESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             CcccEEEEeCCcc-eEECHHH--ccCCCCCcEEeCCCCCCcceeCHhHc------CCCcCCcEEECCCCCCeeEcCHHHh
Confidence            3677777777421 1233211  2357777777777764 432  1112      257777777777643222    234


Q ss_pred             ccccccceeeeccccCcccee-Ee-ccCcc---eEEEeee-ccccCCCceEEEeCCCcc-eEEeeccccCCC--ccccCc
Q 043655          236 VGCRALEDLTLDNCIQLCGLD-IF-GTKLE---RLRVASC-FDAYCDKSWVKIDASKLK-VLNWEYNAITAS--SSLENL  306 (512)
Q Consensus       236 ~~cp~Le~L~l~~c~~l~~~~-v~-~~~L~---~L~l~~c-~~~~~~~~~~~i~~p~L~-~L~~~~~~~~~~--~~l~~~  306 (512)
                      ..+++|+.|++.++.. ..+. +. .++|+   .|.+.++ ........ ..-..++|+ +|.++++.+...  ..+.. 
T Consensus       102 ~~l~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-  178 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNNGFTSVQGYAFNG-  178 (239)
T ss_dssp             ECCTTCCEEEEEEECC-CSCCCCTTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSCCCCEECTTTTTT-
T ss_pred             CCCCCCCEEeCCCCCC-ccccccccccccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCCCCcccCHhhcCC-
Confidence            4677788888877742 1121 11 14555   7777765 22110000 001356788 888877655321  12233 


Q ss_pred             ccceeeEEeeEE-cccchhHHHHhHHHHHhhcC-CcccEeeecchhhhhhcccccccccccccccceEEEEe
Q 043655          307 ASLHEASVGFIL-LHEDLTSAKLQSVSNFLSGL-SHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHT  376 (512)
Q Consensus       307 ~~L~~l~l~~~~-~~~~~~~~~~~~~~~~l~~l-~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  376 (512)
                      ++|+++++..+. ...-.        ...+..+ ++++.|+++...+..+..       ..|++|+.|.+..
T Consensus       179 ~~L~~L~L~~n~~l~~i~--------~~~~~~l~~~L~~L~l~~N~l~~l~~-------~~~~~L~~L~l~~  235 (239)
T 2xwt_C          179 TKLDAVYLNKNKYLTVID--------KDAFGGVYSGPSLLDVSQTSVTALPS-------KGLEHLKELIARN  235 (239)
T ss_dssp             CEEEEEECTTCTTCCEEC--------TTTTTTCSBCCSEEECTTCCCCCCCC-------TTCTTCSEEECTT
T ss_pred             CCCCEEEcCCCCCcccCC--------HHHhhccccCCcEEECCCCccccCCh-------hHhccCceeeccC
Confidence            688888887552 21110        1235667 899999998876544321       2688999998754

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.12  E-value=8.2e-07  Score=76.84  Aligned_cols=45  Identities=11%  Similarity=0.199  Sum_probs=20.2

Q ss_pred             CCccEEEEecccCccccCCCcc-ccccCcccceEEeeeEEeeCccchhhh
Q 043655          163 DSLRVFKLRSRYRGFRLPPSSV-VAGGFRSLHTLSLSLVILFNQPCLLDL  211 (512)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~l~~l  211 (512)
                      -.|+.|+|++|  .  +.+.++ ...++++|++|+|++|...++.++..+
T Consensus        61 ~~L~~LDLs~~--~--Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L  106 (176)
T 3e4g_A           61 YKIQAIDATDS--C--IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL  106 (176)
T ss_dssp             CCEEEEEEESC--C--CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH
T ss_pred             ceEeEEeCcCC--C--ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH
Confidence            35666666663  1  111111 123455555555555544444444433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.11  E-value=6.6e-06  Score=83.63  Aligned_cols=115  Identities=15%  Similarity=0.007  Sum_probs=50.7

Q ss_pred             cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccccccceeeeccccCccceeEeccCcceE
Q 043655          188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERL  265 (512)
Q Consensus       188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L  265 (512)
                      .+++|++|+++++.+.+-.        ...++|++|++.++.  ++.. +..+++|+.|++.+|.. ..+....++|+.|
T Consensus       151 ~l~~L~~L~l~~N~l~~lp--------~~~~~L~~L~L~~n~l~~l~~-~~~l~~L~~L~l~~N~l-~~l~~~~~~L~~L  220 (454)
T 1jl5_A          151 NSSFLKIIDVDNNSLKKLP--------DLPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSL-KKLPDLPLSLESI  220 (454)
T ss_dssp             TCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCC-SSCCCCCTTCCEE
T ss_pred             CCCCCCEEECCCCcCcccC--------CCcccccEEECcCCcCCcCcc-ccCCCCCCEEECCCCcC-CcCCCCcCcccEE
Confidence            4555555555555443211        122455555555543  2221 34455566666655542 1121122456666


Q ss_pred             EEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEeeE
Q 043655          266 RVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFI  317 (512)
Q Consensus       266 ~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~  317 (512)
                      .+.+|.....  .. ....++|++|.++++.+....  ...++|+.++++.+
T Consensus       221 ~l~~n~l~~l--p~-~~~l~~L~~L~l~~N~l~~l~--~~~~~L~~L~l~~N  267 (454)
T 1jl5_A          221 VAGNNILEEL--PE-LQNLPFLTTIYADNNLLKTLP--DLPPSLEALNVRDN  267 (454)
T ss_dssp             ECCSSCCSSC--CC-CTTCTTCCEEECCSSCCSSCC--SCCTTCCEEECCSS
T ss_pred             ECcCCcCCcc--cc-cCCCCCCCEEECCCCcCCccc--ccccccCEEECCCC
Confidence            6655532210  11 113455666666655443211  12345555555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.11  E-value=2.4e-06  Score=79.45  Aligned_cols=54  Identities=13%  Similarity=0.243  Sum_probs=31.9

Q ss_pred             hhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccC---CcHHHHHHHHhh
Q 043655          335 LSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNK---HNVQGLACLFRS  392 (512)
Q Consensus       335 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~---~~~~~l~~~L~~  392 (512)
                      +..+++|+.|+++.+.+..+..    .....+++|++|+|..+.-.   .+...+..+++.
T Consensus       151 ~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~  207 (251)
T 3m19_A          151 FDKLTNLQTLSLSTNQLQSVPH----GAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRE  207 (251)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHH
T ss_pred             cCcCcCCCEEECCCCcCCccCH----HHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHh
Confidence            4566777888887765443221    13446778888888764322   345556555553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.11  E-value=1.6e-06  Score=88.17  Aligned_cols=134  Identities=17%  Similarity=0.110  Sum_probs=67.4

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      ..++.|++....  ...+|..   .++|++|+|++|... .+|.    ...+++|++|+++++.+.+-.        ...
T Consensus       153 ~~L~~L~l~~N~--l~~lp~~---~~~L~~L~L~~n~l~-~l~~----~~~l~~L~~L~l~~N~l~~l~--------~~~  214 (454)
T 1jl5_A          153 SFLKIIDVDNNS--LKKLPDL---PPSLEFIAAGNNQLE-ELPE----LQNLPFLTAIYADNNSLKKLP--------DLP  214 (454)
T ss_dssp             TTCCEEECCSSC--CSCCCCC---CTTCCEEECCSSCCS-SCCC----CTTCTTCCEEECCSSCCSSCC--------CCC
T ss_pred             CCCCEEECCCCc--CcccCCC---cccccEEECcCCcCC-cCcc----ccCCCCCCEEECCCCcCCcCC--------CCc
Confidence            345555554322  2234432   247788888774221 1221    346777777777776665421        123


Q ss_pred             cccceecccccc--ccchhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeecc
Q 043655          218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYN  295 (512)
Q Consensus       218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~  295 (512)
                      ++|+.|++.++.  .+.. +..+++|+.|++.++.- ..+.-..++|+.|.+.++....     +....++|+.|+++++
T Consensus       215 ~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l-~~l~~~~~~L~~L~l~~N~l~~-----l~~~~~~L~~L~ls~N  287 (454)
T 1jl5_A          215 LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTD-----LPELPQSLTFLDVSEN  287 (454)
T ss_dssp             TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCC-SSCCSCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSS
T ss_pred             CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcC-CcccccccccCEEECCCCcccc-----cCcccCcCCEEECcCC
Confidence            567777776664  2322 34566677777766642 2221122566666666553221     0011245555555554


Q ss_pred             c
Q 043655          296 A  296 (512)
Q Consensus       296 ~  296 (512)
                      .
T Consensus       288 ~  288 (454)
T 1jl5_A          288 I  288 (454)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.10  E-value=6.2e-06  Score=76.64  Aligned_cols=96  Identities=18%  Similarity=0.169  Sum_probs=58.5

Q ss_pred             EeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecc
Q 043655          146 EVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDL  225 (512)
Q Consensus       146 ~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L  225 (512)
                      ++.......+|..+.  ++|+.|+|+++... .+++.  ....+++|++|+|+++.+.+...  ..+  ..+++|+.|+|
T Consensus        20 ~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~-~~~~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~--~~l~~L~~L~L   90 (251)
T 3m19_A           20 DCQGKSLDSVPSGIP--ADTEKLDLQSTGLA-TLSDA--TFRGLTKLTWLNLDYNQLQTLSA--GVF--DDLTELGTLGL   90 (251)
T ss_dssp             ECTTCCCSSCCSCCC--TTCCEEECTTSCCC-CCCTT--TTTTCTTCCEEECTTSCCCCCCT--TTT--TTCTTCCEEEC
T ss_pred             ecCCCCccccCCCCC--CCCCEEEccCCCcC-ccCHh--HhcCcccCCEEECCCCcCCccCH--hHh--ccCCcCCEEEC
Confidence            333444455665543  57888888874221 22221  13468888888888887765211  111  36788888888


Q ss_pred             cccc--cc-chhcccccccceeeecccc
Q 043655          226 DACY--GL-KQLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       226 ~~~~--~l-~~l~~~cp~Le~L~l~~c~  250 (512)
                      .++.  .+ ...+..+++|+.|+|.++.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~  118 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQ  118 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCc
Confidence            8775  22 2344567888888888774

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.06  E-value=1.4e-06  Score=85.56  Aligned_cols=155  Identities=14%  Similarity=0.025  Sum_probs=78.9

Q ss_pred             ccchhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEE-eCCCcceEEeecc--c-cCC------
Q 043655          230 GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKI-DASKLKVLNWEYN--A-ITA------  299 (512)
Q Consensus       230 ~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i-~~p~L~~L~~~~~--~-~~~------  299 (512)
                      .+..++..+|.|++|.|.+|.++....+..++|++|.|..|.........+.. ..|+|+.|+++..  . ...      
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            34566667788888888776443322234578888888766432111111111 4688888887421  1 011      


Q ss_pred             --CccccCcccceeeEEeeEEcccchhHHHHhHHHHHh--hcCCcccEeeecchhhhhhcccccccccccccccceEEEE
Q 043655          300 --SSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFL--SGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELH  375 (512)
Q Consensus       300 --~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l--~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  375 (512)
                        ......+|+|+.+++..+...+..       ...+.  ..+++|++|+|+.+.+...........++.+++|++|+|.
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~-------~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~  315 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVV-------VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK  315 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHH-------HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHH-------HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence              111234678888877654322110       01111  2467788888876543222111111233466778888776


Q ss_pred             eeccCCcHHHHHHHHhhC
Q 043655          376 TGFNKHNVQGLACLFRSS  393 (512)
Q Consensus       376 ~~~~~~~~~~l~~~L~~c  393 (512)
                      .+.  .+..++..+-+.+
T Consensus       316 ~n~--i~d~~~~~l~~al  331 (362)
T 2ra8_A          316 YNY--LSDEMKKELQKSL  331 (362)
T ss_dssp             SBB--CCHHHHHHHHHHC
T ss_pred             CCc--CCHHHHHHHHHHc
Confidence            542  2334444444433

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.05  E-value=9.9e-07  Score=76.32  Aligned_cols=82  Identities=11%  Similarity=0.143  Sum_probs=65.2

Q ss_pred             cccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc-----ccchhcc---cccccceeeeccccCccceeEe---
Q 043655          190 RSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY-----GLKQLKV---GCRALEDLTLDNCIQLCGLDIF---  258 (512)
Q Consensus       190 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~-----~l~~l~~---~cp~Le~L~l~~c~~l~~~~v~---  258 (512)
                      .+|+.|+|++|.+. +.++..+   .+|++|++|+|.+|.     ++..+..   .|++|++|+|.+|..+++..+.   
T Consensus        61 ~~L~~LDLs~~~It-d~GL~~L---~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           61 YKIQAIDATDSCIM-SIGFDHM---EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             CCEEEEEEESCCCC-GGGGGGG---TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             ceEeEEeCcCCCcc-HHHHHHh---cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            47999999999954 4567665   489999999999997     4566654   3789999999999987765443   


Q ss_pred             -ccCcceEEEeeeccccC
Q 043655          259 -GTKLERLRVASCFDAYC  275 (512)
Q Consensus       259 -~~~L~~L~l~~c~~~~~  275 (512)
                       .++|++|.+.+|....+
T Consensus       137 ~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GCTTCCEEEEESCTTCCC
T ss_pred             cCCCCCEEECCCCCCCCc
Confidence             38999999999975543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.03  E-value=4e-06  Score=77.25  Aligned_cols=77  Identities=19%  Similarity=0.176  Sum_probs=46.7

Q ss_pred             cccceEEeeeEEeeCccchhhhhcCCCCcccceecccccccc---ch-hcccccccceeeeccccCccceeE----eccC
Q 043655          190 RSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGL---KQ-LKVGCRALEDLTLDNCIQLCGLDI----FGTK  261 (512)
Q Consensus       190 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l---~~-l~~~cp~Le~L~l~~c~~l~~~~v----~~~~  261 (512)
                      ++|++|+|+++.+..-..  ..+  ..+++|++|+|.++..+   .. .+..+++|+.|++.+|..+..+..    ..++
T Consensus        31 ~~l~~L~l~~n~l~~i~~--~~~--~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~  106 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPS--HAF--SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL  106 (239)
T ss_dssp             TTCCEEEEESCCCSEECT--TTT--TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred             CcccEEEEeCCcceEECH--HHc--cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence            489999999887765211  011  36888888888877522   22 345678888888887554443321    1145


Q ss_pred             cceEEEeee
Q 043655          262 LERLRVASC  270 (512)
Q Consensus       262 L~~L~l~~c  270 (512)
                      |+.|.+.++
T Consensus       107 L~~L~l~~n  115 (239)
T 2xwt_C          107 LKFLGIFNT  115 (239)
T ss_dssp             CCEEEEEEE
T ss_pred             CCEEeCCCC
Confidence            555555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.02  E-value=9.7e-06  Score=75.92  Aligned_cols=97  Identities=21%  Similarity=0.192  Sum_probs=61.6

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      ..++.|++....  ...+| .+..+++|++|+|++|... .+++    ...+++|+.|+|+++.+.+-..+      .. 
T Consensus        41 ~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~L~~N~i~-~~~~----l~~l~~L~~L~L~~N~l~~l~~~------~~-  105 (263)
T 1xeu_A           41 SGVQNFNGDNSN--IQSLA-GMQFFTNLKELHLSHNQIS-DLSP----LKDLTKLEELSVNRNRLKNLNGI------PS-  105 (263)
T ss_dssp             TTCSEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCC-CCGG----GTTCSSCCEEECCSSCCSCCTTC------CC-
T ss_pred             CcCcEEECcCCC--cccch-HHhhCCCCCEEECCCCccC-CChh----hccCCCCCEEECCCCccCCcCcc------cc-
Confidence            567777665332  23445 4556888999999885211 2222    34688899999988877653222      12 


Q ss_pred             cccceecccccc--ccchhcccccccceeeecccc
Q 043655          218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~  250 (512)
                      ++|+.|+|.++.  ++.. +..+++|+.|++.++.
T Consensus       106 ~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~  139 (263)
T 1xeu_A          106 ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNK  139 (263)
T ss_dssp             SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTTSC
T ss_pred             CcccEEEccCCccCCChh-hcCcccccEEECCCCc
Confidence            788888887775  3332 4567777777777765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.99  E-value=7.5e-06  Score=85.26  Aligned_cols=180  Identities=19%  Similarity=0.134  Sum_probs=104.6

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      .+++.|++....  ...+|..++  ++|++|+|++|... .+|      ..+++|++|+|+++.+.+-.   . +    .
T Consensus        59 ~~L~~L~Ls~n~--L~~lp~~l~--~~L~~L~Ls~N~l~-~ip------~~l~~L~~L~Ls~N~l~~ip---~-l----~  119 (571)
T 3cvr_A           59 NQFSELQLNRLN--LSSLPDNLP--PQITVLEITQNALI-SLP------ELPASLEYLDACDNRLSTLP---E-L----P  119 (571)
T ss_dssp             TTCSEEECCSSC--CSCCCSCCC--TTCSEEECCSSCCS-CCC------CCCTTCCEEECCSSCCSCCC---C-C----C
T ss_pred             CCccEEEeCCCC--CCccCHhHc--CCCCEEECcCCCCc-ccc------cccCCCCEEEccCCCCCCcc---h-h----h
Confidence            467777776432  234676553  78999999985332 333      24789999999988776522   2 1    1


Q ss_pred             cccceecccccc--ccchhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeecc
Q 043655          218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYN  295 (512)
Q Consensus       218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~  295 (512)
                      .+|+.|+|.++.  ++..   .+++|+.|+|.++.. ..+.-..++|+.|.+.++......  .  +. ++|+.|+++++
T Consensus       120 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~~l~~L~~L~Ls~N~L~~lp--~--l~-~~L~~L~Ls~N  190 (571)
T 3cvr_A          120 ASLKHLDVDNNQLTMLPE---LPALLEYINADNNQL-TMLPELPTSLEVLSVRNNQLTFLP--E--LP-ESLEALDVSTN  190 (571)
T ss_dssp             TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCC--C--CC-TTCCEEECCSS
T ss_pred             cCCCEEECCCCcCCCCCC---cCccccEEeCCCCcc-CcCCCcCCCcCEEECCCCCCCCcc--h--hh-CCCCEEECcCC
Confidence            288888888875  3333   678888888888753 223223467788887776433211  1  22 77777777776


Q ss_pred             ccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEE
Q 043655          296 AITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELH  375 (512)
Q Consensus       296 ~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  375 (512)
                      .+.....+..  +|                         ....+.++.|+++.+.+..+..     ....+++|+.|+|.
T Consensus       191 ~L~~lp~~~~--~L-------------------------~~~~~~L~~L~Ls~N~l~~lp~-----~l~~l~~L~~L~L~  238 (571)
T 3cvr_A          191 LLESLPAVPV--RN-------------------------HHSEETEIFFRCRENRITHIPE-----NILSLDPTCTIILE  238 (571)
T ss_dssp             CCSSCCCCC-----------------------------------CCEEEECCSSCCCCCCG-----GGGGSCTTEEEECC
T ss_pred             CCCchhhHHH--hh-------------------------hcccccceEEecCCCcceecCH-----HHhcCCCCCEEEee
Confidence            5432111100  11                         1222335777777766543321     23347788888876


Q ss_pred             ee
Q 043655          376 TG  377 (512)
Q Consensus       376 ~~  377 (512)
                      .+
T Consensus       239 ~N  240 (571)
T 3cvr_A          239 DN  240 (571)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.99  E-value=2.8e-06  Score=79.57  Aligned_cols=36  Identities=25%  Similarity=0.602  Sum_probs=34.1

Q ss_pred             CccCCCChHHHHHHHccCCchhhH-HHhhhcHhHHHh
Q 043655           24 DRISDLPDAILHHILFLLPIKSIA-QTCTLSKRWRSL   59 (512)
Q Consensus        24 D~is~LPdevl~~Ils~L~~~d~~-rts~lSrrWr~l   59 (512)
                      ..+..||||++..||++||.++++ |++.|||+|+.+
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            468999999999999999999999 999999999985

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.95  E-value=2.1e-05  Score=81.82  Aligned_cols=175  Identities=18%  Similarity=0.093  Sum_probs=94.0

Q ss_pred             cCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhccccc
Q 043655          162 SDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCR  239 (512)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp  239 (512)
                      +.+|+.|+|+++... .+|..     -+++|++|+|+++.+..-.        ..+++|+.|+|.++.  ++.. +  +.
T Consensus        58 ~~~L~~L~Ls~n~L~-~lp~~-----l~~~L~~L~Ls~N~l~~ip--------~~l~~L~~L~Ls~N~l~~ip~-l--~~  120 (571)
T 3cvr_A           58 INQFSELQLNRLNLS-SLPDN-----LPPQITVLEITQNALISLP--------ELPASLEYLDACDNRLSTLPE-L--PA  120 (571)
T ss_dssp             HTTCSEEECCSSCCS-CCCSC-----CCTTCSEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCCCC-C--CT
T ss_pred             cCCccEEEeCCCCCC-ccCHh-----HcCCCCEEECcCCCCcccc--------cccCCCCEEEccCCCCCCcch-h--hc
Confidence            358999999985322 24432     2578999999988776321        246788888887764  3332 1  12


Q ss_pred             ccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEeeEEc
Q 043655          240 ALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILL  319 (512)
Q Consensus       240 ~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~  319 (512)
                      +|+.|+|.++.. ..+.-..++|+.|.+                         +++.+.....  .+++|+.++++.+..
T Consensus       121 ~L~~L~Ls~N~l-~~lp~~l~~L~~L~L-------------------------s~N~l~~lp~--~l~~L~~L~Ls~N~L  172 (571)
T 3cvr_A          121 SLKHLDVDNNQL-TMLPELPALLEYINA-------------------------DNNQLTMLPE--LPTSLEVLSVRNNQL  172 (571)
T ss_dssp             TCCEEECCSSCC-SCCCCCCTTCCEEEC-------------------------CSSCCSCCCC--CCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcC-CCCCCcCccccEEeC-------------------------CCCccCcCCC--cCCCcCEEECCCCCC
Confidence            677777776642 111112244444444                         4443322111  334555555443322


Q ss_pred             ccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccccccccc-------ceEEEEeeccCCcHHHHHHHHhh
Q 043655          320 HEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNL-------KSLELHTGFNKHNVQGLACLFRS  392 (512)
Q Consensus       320 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L-------~~L~L~~~~~~~~~~~l~~~L~~  392 (512)
                      ..-         .. +.  ++|+.|+++.+.+..+..      .+  .+|       +.|+|..+.-.    .++.-+..
T Consensus       173 ~~l---------p~-l~--~~L~~L~Ls~N~L~~lp~------~~--~~L~~~~~~L~~L~Ls~N~l~----~lp~~l~~  228 (571)
T 3cvr_A          173 TFL---------PE-LP--ESLEALDVSTNLLESLPA------VP--VRNHHSEETEIFFRCRENRIT----HIPENILS  228 (571)
T ss_dssp             SCC---------CC-CC--TTCCEEECCSSCCSSCCC------CC----------CCEEEECCSSCCC----CCCGGGGG
T ss_pred             CCc---------ch-hh--CCCCEEECcCCCCCchhh------HH--HhhhcccccceEEecCCCcce----ecCHHHhc
Confidence            110         00 11  568888888776543322      11  155       88888754211    23333445


Q ss_pred             CCCCcEEEEEeec
Q 043655          393 SPSIHTLILKIIN  405 (512)
Q Consensus       393 cp~Le~L~l~~~~  405 (512)
                      +++|+.|+|....
T Consensus       229 l~~L~~L~L~~N~  241 (571)
T 3cvr_A          229 LDPTCTIILEDNP  241 (571)
T ss_dssp             SCTTEEEECCSSS
T ss_pred             CCCCCEEEeeCCc
Confidence            9999999997543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.93  E-value=2.1e-05  Score=83.19  Aligned_cols=95  Identities=20%  Similarity=0.172  Sum_probs=63.0

Q ss_pred             EEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC--ccchhhhhcCCCCcccce
Q 043655          145 IEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN--QPCLLDLFTDSSFPHLKK  222 (512)
Q Consensus       145 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~l~~l~~~~~~p~L~~  222 (512)
                      +++...+...+|..+  .+++++|+|++|.. -.+++..  ..++++|++|+|+++.+..  ++.+      .++++|++
T Consensus        36 ~~c~~~~l~~vP~~l--p~~~~~LdLs~N~i-~~l~~~~--f~~l~~L~~L~Ls~N~i~~i~~~~f------~~L~~L~~  104 (635)
T 4g8a_A           36 YQCMELNFYKIPDNL--PFSTKNLDLSFNPL-RHLGSYS--FFSFPELQVLDLSRCEIQTIEDGAY------QSLSHLST  104 (635)
T ss_dssp             EECTTSCCSSCCSSS--CTTCCEEECTTSCC-CEECTTT--TTTCTTCCEEECTTCCCCEECTTTT------TTCTTCCE
T ss_pred             EECCCCCcCccCCCC--CcCCCEEEeeCCCC-CCCCHHH--HhCCCCCCEEECCCCcCCCcChhHh------cCCCCCCE
Confidence            343334455666544  35789999998532 2344332  3578999999999887754  2222      36889999


Q ss_pred             ecccccc--ccc-hhcccccccceeeecccc
Q 043655          223 LDLDACY--GLK-QLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       223 L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~  250 (512)
                      |+|.++.  .+. ..+.++++|+.|++.+|.
T Consensus       105 L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~  135 (635)
T 4g8a_A          105 LILTGNPIQSLALGAFSGLSSLQKLVAVETN  135 (635)
T ss_dssp             EECTTCCCCEECGGGGTTCTTCCEEECTTSC
T ss_pred             EEccCCcCCCCCHHHhcCCCCCCEEECCCCc
Confidence            9998875  332 356678889999888875

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.88  E-value=1e-05  Score=69.93  Aligned_cols=104  Identities=20%  Similarity=0.166  Sum_probs=53.5

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      ..++.|++....-....+|..+..+++|++|+|++|.  +.-.   .....+++|++|+|+++.+.+.  +...+  ..+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~--l~~~---~~~~~l~~L~~L~Ls~N~l~~~--~~~~~--~~l   94 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG--LISV---SNLPKLPKLKKLELSENRIFGG--LDMLA--EKL   94 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC--CCCC---SSCCCCSSCCEEEEESCCCCSC--CCHHH--HHC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC--CCCh---hhhccCCCCCEEECcCCcCchH--HHHHH--hhC
Confidence            3455555543321112455555566777777777642  2111   1123567777777777766542  11112  136


Q ss_pred             cccceecccccc--ccc--hhcccccccceeeecccc
Q 043655          218 PHLKKLDLDACY--GLK--QLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       218 p~L~~L~L~~~~--~l~--~l~~~cp~Le~L~l~~c~  250 (512)
                      |+|+.|+|.++.  ++.  ..+..+++|+.|++.+|.
T Consensus        95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A           95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred             CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence            666666666654  222  233455666666666654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.88  E-value=3e-06  Score=78.32  Aligned_cols=38  Identities=26%  Similarity=0.504  Sum_probs=35.0

Q ss_pred             cCCCChHHHHHHHccCCchhhHHHhhhcHhHHH------hhccC
Q 043655           26 ISDLPDAILHHILFLLPIKSIAQTCTLSKRWRS------LWCSF   63 (512)
Q Consensus        26 is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~------lw~~~   63 (512)
                      |++||+||+.+|||||+++|+++++.|||+||.      +|+.+
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~   48 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYF   48 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            788999999999999999999999999999996      57654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.87  E-value=8.2e-06  Score=70.64  Aligned_cols=109  Identities=17%  Similarity=0.127  Sum_probs=67.0

Q ss_pred             CCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccc
Q 043655          285 SKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLH  364 (512)
Q Consensus       285 p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~  364 (512)
                      ++|+.|.+.++.+.....+..+++|+.++++.+...+.        +..++..+++|+.|+++.+.+..+...   ....
T Consensus        49 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~l~  117 (168)
T 2ell_A           49 VNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG--------LDMLAEKLPNLTHLNLSGNKLKDISTL---EPLK  117 (168)
T ss_dssp             GGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC--------CCHHHHHCTTCCEEECBSSSCCSSGGG---GGGS
T ss_pred             CCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH--------HHHHHhhCCCCCEEeccCCccCcchhH---HHHh
Confidence            44555555554443334455677777777766544321        123456688999999988765443221   2445


Q ss_pred             cccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655          365 TFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII  404 (512)
Q Consensus       365 ~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~  404 (512)
                      .+++|++|+|..+.-..........+..+|+|+.|++...
T Consensus       118 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          118 KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            7889999999765322211223357899999999988754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.84  E-value=4.5e-06  Score=70.68  Aligned_cols=107  Identities=20%  Similarity=0.141  Sum_probs=68.4

Q ss_pred             CCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccc
Q 043655          284 ASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNL  363 (512)
Q Consensus       284 ~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~  363 (512)
                      .++|++|.++++.+.....+.++++|+.++++.+...+.        +...+..+++++.|+++.+.+..+...   ...
T Consensus        41 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~--------~~~~~~~l~~L~~L~ls~N~i~~~~~~---~~~  109 (149)
T 2je0_A           41 FEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG--------LEVLAEKCPNLTHLNLSGNKIKDLSTI---EPL  109 (149)
T ss_dssp             CTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC--------THHHHHHCTTCCEEECTTSCCCSHHHH---GGG
T ss_pred             cCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch--------HHHHhhhCCCCCEEECCCCcCCChHHH---HHH
Confidence            356666666666554445566778888888876544321        234566789999999988765443211   244


Q ss_pred             ccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEE
Q 043655          364 HTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLIL  401 (512)
Q Consensus       364 ~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l  401 (512)
                      ..+++|++|++..+.-..........+..+|+|+.|++
T Consensus       110 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A          110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            57889999999764222111122357899999999865

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.80  E-value=9.4e-06  Score=85.96  Aligned_cols=150  Identities=15%  Similarity=0.207  Sum_probs=83.7

Q ss_pred             CCCcceEEeeccccCC--CccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccc
Q 043655          284 ASKLKVLNWEYNAITA--SSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFT  361 (512)
Q Consensus       284 ~p~L~~L~~~~~~~~~--~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~  361 (512)
                      .++++.+.++++....  ...+..++.|+.+++..+......       ....+..+++|+.|+++.+.+..+..    .
T Consensus       444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~-------~~~~~~~l~~L~~L~Ls~N~L~~l~~----~  512 (635)
T 4g8a_A          444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-------LPDIFTELRNLTFLDLSQCQLEQLSP----T  512 (635)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE-------ECSCCTTCTTCCEEECTTSCCCEECT----T
T ss_pred             ccccccccccccccccccccccccchhhhhhhhhhccccccc-------CchhhhhccccCEEECCCCccCCcCh----H
Confidence            4556666655543321  133456677777777644321110       11246677888888888776544321    2


Q ss_pred             ccccccccceEEEEeeccCCcHHHH-HHHHhhCCCCcEEEEEeecccchhhhcccccccCccCccchhhhhccccCchhh
Q 043655          362 NLHTFTNLKSLELHTGFNKHNVQGL-ACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPF  440 (512)
Q Consensus       362 ~~~~~~~L~~L~L~~~~~~~~~~~l-~~~L~~cp~Le~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  440 (512)
                      .+..+++|+.|+|+.+.-.    ++ ...+..+++|+.|++....=...               .+.        ....+
T Consensus       513 ~f~~l~~L~~L~Ls~N~l~----~l~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~--------~l~~l  565 (635)
T 4g8a_A          513 AFNSLSSLQVLNMSHNNFF----SLDTFPYKCLNSLQVLDYSLNHIMTS---------------KKQ--------ELQHF  565 (635)
T ss_dssp             TTTTCTTCCEEECTTSCCC----BCCCGGGTTCTTCCEEECTTSCCCBC---------------CSS--------CTTCC
T ss_pred             HHcCCCCCCEEECCCCcCC----CCChhHHhCCCCCCEEECCCCcCCCC---------------CHH--------HHHhh
Confidence            4456788888888653211    11 22357788999988864211100               000        11222


Q ss_pred             hcCccEEEEee--eccchhHHHHHHHHHhcCcc
Q 043655          441 LNNLNVVEIHG--FLECENEVSLAKFLLKHGKA  471 (512)
Q Consensus       441 ~~~L~~v~i~~--~~g~~~e~~l~~~ll~~a~~  471 (512)
                      ..+|+++.+.+  |.++..-..|+.++-.+...
T Consensus       566 ~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~  598 (635)
T 4g8a_A          566 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL  598 (635)
T ss_dssp             CTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTT
T ss_pred             hCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCc
Confidence            46899999976  55666666777777555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.78  E-value=1.1e-05  Score=68.33  Aligned_cols=79  Identities=27%  Similarity=0.300  Sum_probs=37.4

Q ss_pred             CCccEEEEecccCc-cccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--c-cchhcccc
Q 043655          163 DSLRVFKLRSRYRG-FRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--G-LKQLKVGC  238 (512)
Q Consensus       163 ~~L~~L~L~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~-l~~l~~~c  238 (512)
                      ++|+.|++++|... ..++.   ....+++|+.|+|+++.+.+...+      ..+++|+.|+|.++.  + +......+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~------~~l~~L~~L~Ls~n~i~~~~~~~~~~l   87 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEG---LTDEFEELEFLSTINVGLTSIANL------PKLNKLKKLELSDNRVSGGLEVLAEKC   87 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCS---CCTTCTTCCEEECTTSCCCCCTTC------CCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred             ccCeEEEccCCcCChhHHHH---HHhhcCCCcEEECcCCCCCCchhh------hcCCCCCEEECCCCcccchHHHHhhhC
Confidence            45566666653211 11221   123456666666665555432111      245555555555554  2 33334445


Q ss_pred             cccceeeecccc
Q 043655          239 RALEDLTLDNCI  250 (512)
Q Consensus       239 p~Le~L~l~~c~  250 (512)
                      ++|+.|++.+|.
T Consensus        88 ~~L~~L~ls~N~   99 (149)
T 2je0_A           88 PNLTHLNLSGNK   99 (149)
T ss_dssp             TTCCEEECTTSC
T ss_pred             CCCCEEECCCCc
Confidence            566666665553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.72  E-value=2.8e-05  Score=69.85  Aligned_cols=92  Identities=21%  Similarity=0.238  Sum_probs=52.5

Q ss_pred             CCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc
Q 043655          150 DDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY  229 (512)
Q Consensus       150 ~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~  229 (512)
                      .+...+|..+  .++|++|+|+++... .+++.  ....+++|++|+|+++.+.+-..  ..+  ..+++|++|+|.++.
T Consensus        17 ~~l~~~p~~~--~~~l~~L~l~~n~l~-~~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~--~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           17 QGRTSVPTGI--PAQTTYLDLETNSLK-SLPNG--VFDELTSLTQLYLGGNKLQSLPN--GVF--NKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             SCCSSCCSCC--CTTCSEEECCSSCCC-CCCTT--TTTTCTTCSEEECCSSCCCCCCT--TTT--TTCTTCCEEECCSSC
T ss_pred             CCccCCCCCC--CCCCcEEEcCCCccC-cCChh--hhcccccCcEEECCCCccCccCh--hhc--CCCCCcCEEECCCCc
Confidence            3344555544  357888888874221 22221  13467888888888777654211  111  356777777777664


Q ss_pred             --ccc-hhcccccccceeeecccc
Q 043655          230 --GLK-QLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       230 --~l~-~l~~~cp~Le~L~l~~c~  250 (512)
                        .+. ..+..+++|+.|++.++.
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~  111 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQ  111 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCHhHhcCccCCCEEEcCCCc
Confidence              221 223456777777776664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.67  E-value=1.1e-05  Score=79.10  Aligned_cols=63  Identities=13%  Similarity=0.094  Sum_probs=35.1

Q ss_pred             CCCcceEEeeccccCCC-----ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchh
Q 043655          284 ASKLKVLNWEYNAITAS-----SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPC  350 (512)
Q Consensus       284 ~p~L~~L~~~~~~~~~~-----~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~  350 (512)
                      .|+|++|.+.++.+...     .....+|+|+.++++.+... +.+   ...+...++.+++|+.|+++.+.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~-d~G---~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT-DEG---ARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB-HHH---HHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC-hHH---HHHHHhhcccCCcceEEECCCCc
Confidence            46666666655433211     11135778888888654322 211   12233334667889999998664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.67  E-value=5.7e-05  Score=68.53  Aligned_cols=145  Identities=14%  Similarity=0.139  Sum_probs=80.0

Q ss_pred             EEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceec
Q 043655          145 IEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLD  224 (512)
Q Consensus       145 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~  224 (512)
                      +++.......+|..+  .+.++.|.|+++... .+++.. ....+++|++|+|+++.+.+-..  ..+  ..+++|++|+
T Consensus        16 l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~-~~~~~~-~~~~l~~L~~L~L~~N~i~~i~~--~~~--~~l~~L~~L~   87 (220)
T 2v70_A           16 VDCSNQKLNKIPEHI--PQYTAELRLNNNEFT-VLEATG-IFKKLPQLRKINFSNNKITDIEE--GAF--EGASGVNEIL   87 (220)
T ss_dssp             EECCSSCCSSCCSCC--CTTCSEEECCSSCCC-EECCCC-CGGGCTTCCEEECCSSCCCEECT--TTT--TTCTTCCEEE
T ss_pred             eEeCCCCcccCccCC--CCCCCEEEcCCCcCC-ccCchh-hhccCCCCCEEECCCCcCCEECH--HHh--CCCCCCCEEE
Confidence            333333444566544  345678888875221 222211 23468888888888877654211  011  3678888888


Q ss_pred             ccccc--cc-chhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC-
Q 043655          225 LDACY--GL-KQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS-  300 (512)
Q Consensus       225 L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~-  300 (512)
                      |.++.  ++ ...+..+++|++|+|.++... .+...                    . ....++|++|.++++.+... 
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~--------------------~-~~~l~~L~~L~L~~N~l~~~~  145 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGND--------------------S-FIGLSSVRLLSLYDNQITTVA  145 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSCCC-CBCTT--------------------S-STTCTTCSEEECTTSCCCCBC
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCcCC-eECHh--------------------H-cCCCccCCEEECCCCcCCEEC
Confidence            87765  22 233556778888888776521 11000                    0 00235666666666554332 


Q ss_pred             -ccccCcccceeeEEeeEEc
Q 043655          301 -SSLENLASLHEASVGFILL  319 (512)
Q Consensus       301 -~~l~~~~~L~~l~l~~~~~  319 (512)
                       ..+..+++|+.++++....
T Consensus       146 ~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          146 PGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             TTTTTTCTTCCEEECCSCCE
T ss_pred             HHHhcCCCCCCEEEecCcCC
Confidence             3456777888877765443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.62  E-value=8.8e-05  Score=67.27  Aligned_cols=91  Identities=18%  Similarity=0.218  Sum_probs=47.3

Q ss_pred             cCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCc--cchhhhhcCCCCcccceeccc
Q 043655          149 TDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQ--PCLLDLFTDSSFPHLKKLDLD  226 (512)
Q Consensus       149 ~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~l~~l~~~~~~p~L~~L~L~  226 (512)
                      ......+|..+.  ++|+.|+|+++... .+++.  ....+++|+.|+|+++.+..-  ..+      ..+++|+.|+|.
T Consensus        20 ~~~l~~iP~~l~--~~l~~L~l~~n~i~-~i~~~--~~~~l~~L~~L~Ls~N~i~~~~~~~~------~~l~~L~~L~Ls   88 (220)
T 2v9t_B           20 GKGLTEIPTNLP--ETITEIRLEQNTIK-VIPPG--AFSPYKKLRRIDLSNNQISELAPDAF------QGLRSLNSLVLY   88 (220)
T ss_dssp             TSCCSSCCSSCC--TTCCEEECCSSCCC-EECTT--SSTTCTTCCEEECCSSCCCEECTTTT------TTCSSCCEEECC
T ss_pred             CCCcCcCCCccC--cCCCEEECCCCcCC-CcCHh--HhhCCCCCCEEECCCCcCCCcCHHHh------hCCcCCCEEECC
Confidence            334445565443  57778887774221 23322  124577777777777666532  112      245666666666


Q ss_pred             ccc--ccc-hhcccccccceeeecccc
Q 043655          227 ACY--GLK-QLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       227 ~~~--~l~-~l~~~cp~Le~L~l~~c~  250 (512)
                      ++.  .+. .++.++++|+.|+|.++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~  115 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANK  115 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCC
Confidence            554  111 223445555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.61  E-value=5.3e-06  Score=81.87  Aligned_cols=74  Identities=19%  Similarity=0.110  Sum_probs=43.9

Q ss_pred             HHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccC-CcHHHHHHHHhhCCCCcEEEEEe
Q 043655          330 SVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNK-HNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       330 ~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      .+...+..+++|+.|+++.+.+...........+...++|++|+|+.+.-. .....+...++.+|+|++|++..
T Consensus       174 ~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~  248 (372)
T 3un9_A          174 VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF  248 (372)
T ss_dssp             HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred             HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence            345556677778888887765433221111123334567888888764222 22345666777888888888764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.56  E-value=9.6e-05  Score=67.48  Aligned_cols=94  Identities=20%  Similarity=0.213  Sum_probs=57.2

Q ss_pred             ccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccc
Q 043655          148 ATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDA  227 (512)
Q Consensus       148 ~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~  227 (512)
                      .......+|..+  .++|++|+|++|... .+++.  ....+++|++|+|+++.+..-..  ..+  ..+++|+.|+|.+
T Consensus        27 ~~~~l~~ip~~~--~~~L~~L~Ls~n~i~-~~~~~--~~~~l~~L~~L~L~~N~l~~i~~--~~~--~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           27 RSKRHASVPAGI--PTNAQILYLHDNQIT-KLEPG--VFDSLINLKELYLGSNQLGALPV--GVF--DSLTQLTVLDLGT   97 (229)
T ss_dssp             TTSCCSSCCSCC--CTTCSEEECCSSCCC-CCCTT--TTTTCTTCCEEECCSSCCCCCCT--TTT--TTCTTCCEEECCS
T ss_pred             cCCCcCccCCCC--CCCCCEEEcCCCccC-ccCHH--HhhCccCCcEEECCCCCCCCcCh--hhc--ccCCCcCEEECCC
Confidence            333445566544  378889998885221 22222  13468889999998887754211  111  3678888888887


Q ss_pred             cc--cc-chhcccccccceeeecccc
Q 043655          228 CY--GL-KQLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       228 ~~--~l-~~l~~~cp~Le~L~l~~c~  250 (512)
                      +.  .+ ...+..+++|+.|+|.++.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~  123 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNK  123 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCc
Confidence            74  22 2234567788888887765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.49  E-value=2.7e-05  Score=78.96  Aligned_cols=38  Identities=26%  Similarity=0.423  Sum_probs=35.6

Q ss_pred             CCCccCCCChHHHHHHHccCCchhhHHHhhhcHhHHHh
Q 043655           22 GIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSL   59 (512)
Q Consensus        22 ~~D~is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~l   59 (512)
                      ..|.|+.||+|++.+||+||+.+|+++++.|||+|+++
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI   48 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHH
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            35889999999999999999999999999999999964

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.46  E-value=0.00017  Score=70.71  Aligned_cols=141  Identities=23%  Similarity=0.214  Sum_probs=76.4

Q ss_pred             cCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccc
Q 043655          149 TDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDAC  228 (512)
Q Consensus       149 ~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~  228 (512)
                      ......+|..+.  +.++.|+|++|.. -.+++. .....+++|++|+|+++.+..-..  ..+  ..+++|+.|+|.++
T Consensus        27 ~~~l~~iP~~~~--~~l~~L~Ls~N~l-~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~--~~~--~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           27 KQQLPNVPQSLP--SYTALLDLSHNNL-SRLRAE-WTPTRLTNLHSLLLSHNHLNFISS--EAF--VPVPNLRYLDLSSN   98 (361)
T ss_dssp             SSCCSSCCSSCC--TTCSEEECCSSCC-CEECTT-SSSSCCTTCCEEECCSSCCCEECT--TTT--TTCTTCCEEECCSS
T ss_pred             CCCcCccCccCC--CCCCEEECCCCCC-CccChh-hhhhcccccCEEECCCCcCCccCh--hhc--cCCCCCCEEECCCC
Confidence            333445665443  4578888887522 122222 112267888888888877764211  111  36788888888877


Q ss_pred             c--cc-chhcccccccceeeeccccCcccee---Ee-ccCcceEEEeeeccccCCCceEE--EeCCCcceEEeeccccC
Q 043655          229 Y--GL-KQLKVGCRALEDLTLDNCIQLCGLD---IF-GTKLERLRVASCFDAYCDKSWVK--IDASKLKVLNWEYNAIT  298 (512)
Q Consensus       229 ~--~l-~~l~~~cp~Le~L~l~~c~~l~~~~---v~-~~~L~~L~l~~c~~~~~~~~~~~--i~~p~L~~L~~~~~~~~  298 (512)
                      .  .+ ...+..+++|+.|+|.++.. ..+.   +. .++|+.|.+.++.........+.  ...++|+.|+++++.+.
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcc-cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            5  22 22456678888888888752 2221   11 15667776666533211111110  23566666666665543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.43  E-value=9.5e-05  Score=71.56  Aligned_cols=33  Identities=18%  Similarity=0.202  Sum_probs=16.0

Q ss_pred             Ccccceecccc-ccccc-hhcccccccceeeeccc
Q 043655          217 FPHLKKLDLDA-CYGLK-QLKVGCRALEDLTLDNC  249 (512)
Q Consensus       217 ~p~L~~L~L~~-~~~l~-~l~~~cp~Le~L~l~~c  249 (512)
                      |++|++|.|.+ ...+. ..+.+|++|+.|.+...
T Consensus       100 ~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n  134 (329)
T 3sb4_A          100 KQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKK  134 (329)
T ss_dssp             CTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCS
T ss_pred             cCCCcEEECCccccchhHHHhhcCcccceEEcCCC
Confidence            56666666654 11111 23445666666666544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.42  E-value=2.9e-05  Score=67.73  Aligned_cols=81  Identities=15%  Similarity=0.106  Sum_probs=44.9

Q ss_pred             eccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhcc
Q 043655          160 ITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKV  236 (512)
Q Consensus       160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~  236 (512)
                      ..+.+|+.|+|++|... .++.   ....+++|+.|+|+++.+.+-..+      ..+++|+.|+|.++.  .+. .++.
T Consensus        16 ~~~~~L~~L~l~~n~l~-~i~~---~~~~~~~L~~L~Ls~N~l~~~~~l------~~l~~L~~L~Ls~N~l~~~~~~~~~   85 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIP-VIEN---LGATLDQFDAIDFSDNEIRKLDGF------PLLRRLKTLLVNNNRICRIGEGLDQ   85 (176)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCC---GGGGTTCCSEEECCSSCCCEECCC------CCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             CCcCCceEEEeeCCCCc-hhHH---hhhcCCCCCEEECCCCCCCccccc------ccCCCCCEEECCCCcccccCcchhh
Confidence            45778888888884221 2221   122344888888887776543221      356666666666654  221 2234


Q ss_pred             cccccceeeecccc
Q 043655          237 GCRALEDLTLDNCI  250 (512)
Q Consensus       237 ~cp~Le~L~l~~c~  250 (512)
                      .+++|+.|++.++.
T Consensus        86 ~l~~L~~L~L~~N~   99 (176)
T 1a9n_A           86 ALPDLTELILTNNS   99 (176)
T ss_dssp             HCTTCCEEECCSCC
T ss_pred             cCCCCCEEECCCCc
Confidence            55666666665553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.41  E-value=0.0001  Score=65.99  Aligned_cols=122  Identities=25%  Similarity=0.232  Sum_probs=73.4

Q ss_pred             CCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          139 NVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       139 ~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      .++.|++....  ...+|...+ .+++|++|+|+++... .+++.  ....+++|++|+|+++.+.+-..  ..+  ..+
T Consensus        29 ~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~--~~l   99 (208)
T 2o6s_A           29 QTTYLDLETNS--LKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNG--VFNKLTSLTYLNLSTNQLQSLPN--GVF--DKL   99 (208)
T ss_dssp             TCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCC-CCCTT--TTTTCTTCCEEECCSSCCCCCCT--TTT--TTC
T ss_pred             CCcEEEcCCCc--cCcCChhhhcccccCcEEECCCCccC-ccChh--hcCCCCCcCEEECCCCcCCccCH--hHh--cCc
Confidence            45555554332  234554443 6889999999985322 23322  13468899999999887764221  111  368


Q ss_pred             cccceecccccc--cc-chhcccccccceeeeccccCccceeE---e-ccCcceEEEeee
Q 043655          218 PHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCIQLCGLDI---F-GTKLERLRVASC  270 (512)
Q Consensus       218 p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l~~~~v---~-~~~L~~L~l~~c  270 (512)
                      ++|+.|+|.++.  ++ ...+..+++|+.|++.++.. ..+..   . .++|+.|.+.++
T Consensus       100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSC
T ss_pred             cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCC
Confidence            999999998875  22 23356788999999988752 22211   1 245666655553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.38  E-value=2.3e-06  Score=89.34  Aligned_cols=192  Identities=16%  Similarity=0.065  Sum_probs=103.5

Q ss_pred             cCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccc----------------cchhcccccccceee-ecccc
Q 043655          188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYG----------------LKQLKVGCRALEDLT-LDNCI  250 (512)
Q Consensus       188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~----------------l~~l~~~cp~Le~L~-l~~c~  250 (512)
                      .+++|+.|+|+++.+..   +..-+  ..|++|+.|++.++..                ....+..+++|+.|+ +....
T Consensus       347 ~~~~L~~L~Ls~n~L~~---Lp~~i--~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~  421 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTV---LQSEL--ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY  421 (567)
T ss_dssp             TTTTSSSCCCCHHHHHH---HHHHH--HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred             cCccceeccCChhhHHh---hHHHH--HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc
Confidence            46677777777665542   11111  2467777777654421                112234456666666 22211


Q ss_pred             --Cccce--------eEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC-ccccCcccceeeEEeeEEc
Q 043655          251 --QLCGL--------DIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS-SSLENLASLHEASVGFILL  319 (512)
Q Consensus       251 --~l~~~--------~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~  319 (512)
                        .+..+        .+....|+.|.+.++.....  .. .-..++|+.|.++++.+... ..++++++|+.++++....
T Consensus       422 ~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l--p~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l  498 (567)
T 1dce_A          422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL  498 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC--CC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             cchhhhhhhhcccccccCccCceEEEecCCCCCCC--cC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCC
Confidence              01000        11124577777776543211  11 12456788888887766432 3466778888888775543


Q ss_pred             ccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEE
Q 043655          320 HEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTL  399 (512)
Q Consensus       320 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L  399 (512)
                      .+         +. .+..+++|+.|+++.+.+..+..   +..+..+++|+.|+|+.+.-......+..++..+|+|+.|
T Consensus       499 ~~---------lp-~l~~l~~L~~L~Ls~N~l~~~~~---p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          499 EN---------VD-GVANLPRLQELLLCNNRLQQSAA---IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             CC---------CG-GGTTCSSCCEEECCSSCCCSSST---TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CC---------Cc-ccCCCCCCcEEECCCCCCCCCCC---cHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            22         11 36677888888888776543320   1234467788888886543221122344566778888877


Q ss_pred             E
Q 043655          400 I  400 (512)
Q Consensus       400 ~  400 (512)
                      .
T Consensus       566 ~  566 (567)
T 1dce_A          566 L  566 (567)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.37  E-value=4.4e-05  Score=66.59  Aligned_cols=132  Identities=12%  Similarity=0.076  Sum_probs=75.6

Q ss_pred             ccccccceeeeccccCcccee-Ee--ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceee
Q 043655          236 VGCRALEDLTLDNCIQLCGLD-IF--GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEA  312 (512)
Q Consensus       236 ~~cp~Le~L~l~~c~~l~~~~-v~--~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l  312 (512)
                      ..+++|+.|++.+|.. ..+. +.  .++|+.|.+.+                         +.+.....+..+++|+.+
T Consensus        16 ~~~~~L~~L~l~~n~l-~~i~~~~~~~~~L~~L~Ls~-------------------------N~l~~~~~l~~l~~L~~L   69 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSD-------------------------NEIRKLDGFPLLRRLKTL   69 (176)
T ss_dssp             ECTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCS-------------------------SCCCEECCCCCCSSCCEE
T ss_pred             CCcCCceEEEeeCCCC-chhHHhhhcCCCCCEEECCC-------------------------CCCCcccccccCCCCCEE
Confidence            3678899999988852 2221 11  12455555544                         433322334556666666


Q ss_pred             EEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhh
Q 043655          313 SVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRS  392 (512)
Q Consensus       313 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~  392 (512)
                      +++.+....-.        ..++..+++|+.|+++.+.+..+...   .....+++|++|.+..+.-......-..++..
T Consensus        70 ~Ls~N~l~~~~--------~~~~~~l~~L~~L~L~~N~i~~~~~~---~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~  138 (176)
T 1a9n_A           70 LVNNNRICRIG--------EGLDQALPDLTELILTNNSLVELGDL---DPLASLKSLTYLCILRNPVTNKKHYRLYVIYK  138 (176)
T ss_dssp             ECCSSCCCEEC--------SCHHHHCTTCCEEECCSCCCCCGGGG---GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHH
T ss_pred             ECCCCcccccC--------cchhhcCCCCCEEECCCCcCCcchhh---HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHH
Confidence            66544332110        11346678888888888765433221   13446788999998764322111223346889


Q ss_pred             CCCCcEEEEEee
Q 043655          393 SPSIHTLILKII  404 (512)
Q Consensus       393 cp~Le~L~l~~~  404 (512)
                      +|+|+.|++...
T Consensus       139 l~~L~~Ld~~~n  150 (176)
T 1a9n_A          139 VPQVRVLDFQKV  150 (176)
T ss_dssp             CTTCSEETTEEC
T ss_pred             CCccceeCCCcC
Confidence            999999988754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.28  E-value=0.00019  Score=65.00  Aligned_cols=145  Identities=15%  Similarity=0.124  Sum_probs=87.8

Q ss_pred             cEEEEecccCcc-ccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhccccccc
Q 043655          166 RVFKLRSRYRGF-RLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKVGCRAL  241 (512)
Q Consensus       166 ~~L~L~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~~cp~L  241 (512)
                      +.++++++  .+ .+|..     -.+.+++|+|+++.+.....- ..+  ..+++|+.|+|.++.  .+. ..+..+++|
T Consensus        14 ~~l~~s~n--~l~~iP~~-----~~~~~~~L~L~~N~l~~~~~~-~~~--~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L   83 (220)
T 2v70_A           14 TTVDCSNQ--KLNKIPEH-----IPQYTAELRLNNNEFTVLEAT-GIF--KKLPQLRKINFSNNKITDIEEGAFEGASGV   83 (220)
T ss_dssp             TEEECCSS--CCSSCCSC-----CCTTCSEEECCSSCCCEECCC-CCG--GGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CEeEeCCC--CcccCccC-----CCCCCCEEEcCCCcCCccCch-hhh--ccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence            46777763  22 23321     245778999998877653110 111  257888888887765  222 245567778


Q ss_pred             ceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccceeeEEeeEEc
Q 043655          242 EDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLHEASVGFILL  319 (512)
Q Consensus       242 e~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~  319 (512)
                      +.|+|.++.. ..+..                     ...-..++|++|.++++.+...  ..+.++++|+.++++....
T Consensus        84 ~~L~Ls~N~l-~~~~~---------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  141 (220)
T 2v70_A           84 NEILLTSNRL-ENVQH---------------------KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI  141 (220)
T ss_dssp             CEEECCSSCC-CCCCG---------------------GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred             CEEECCCCcc-CccCH---------------------hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence            8888777652 11110                     0001246777787777765433  3467889999999976543


Q ss_pred             ccchhHHHHhHHHHHhhcCCcccEeeecchh
Q 043655          320 HEDLTSAKLQSVSNFLSGLSHARSLTLESPC  350 (512)
Q Consensus       320 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~  350 (512)
                      ..-.        ...+..+++++.|+++.+.
T Consensus       142 ~~~~--------~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          142 TTVA--------PGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CCBC--------TTTTTTCTTCCEEECCSCC
T ss_pred             CEEC--------HHHhcCCCCCCEEEecCcC
Confidence            2211        1346778999999998765

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.27  E-value=0.00013  Score=73.50  Aligned_cols=42  Identities=31%  Similarity=0.445  Sum_probs=38.1

Q ss_pred             CCCccCCCChHHHHHHHccCCchhhHHHhhhcHhHHH------hhccC
Q 043655           22 GIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRS------LWCSF   63 (512)
Q Consensus        22 ~~D~is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~------lw~~~   63 (512)
                      ..|.|+.||+|++.+||+||+.+|+++++.|||+|+.      +|+..
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~   62 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREK   62 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhh
Confidence            3689999999999999999999999999999999996      57643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.21  E-value=0.0005  Score=62.60  Aligned_cols=128  Identities=20%  Similarity=0.050  Sum_probs=72.0

Q ss_pred             CcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhcccccccceeeeccccCccceeEeccCcceE
Q 043655          189 FRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNCIQLCGLDIFGTKLERL  265 (512)
Q Consensus       189 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L  265 (512)
                      .++|+.|+|+++.+.+...  ..+  ..+++|+.|+|.++.  .+. ..+..+++|+.|+|.++. +..+.-..      
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~--~~~--~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------  107 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEP--GVF--DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAV------  107 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCT--TTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT------
T ss_pred             CCCCCEEEcCCCccCccCH--HHh--hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhH------
Confidence            5899999999988876311  111  368899999998876  222 345678889999988875 22221100      


Q ss_pred             EEeeeccccCCCceEEEeCCCcceEEeeccccCCC-ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEe
Q 043655          266 RVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS-SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSL  344 (512)
Q Consensus       266 ~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L  344 (512)
                                     .-..++|++|.++++.+... ..+..+++|+.++++......-.        ...+..+++++.|
T Consensus       108 ---------------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L  164 (229)
T 3e6j_A          108 ---------------FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP--------HGAFDRLSSLTHA  164 (229)
T ss_dssp             ---------------TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC--------TTTTTTCTTCCEE
T ss_pred             ---------------hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccC--------HHHHhCCCCCCEE
Confidence                           00123444444444433221 22345566666665543321110        1235667778888


Q ss_pred             eecchh
Q 043655          345 TLESPC  350 (512)
Q Consensus       345 ~l~~~~  350 (512)
                      ++.++.
T Consensus       165 ~l~~N~  170 (229)
T 3e6j_A          165 YLFGNP  170 (229)
T ss_dssp             ECTTSC
T ss_pred             EeeCCC
Confidence            877654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.21  E-value=8.2e-05  Score=74.84  Aligned_cols=41  Identities=34%  Similarity=0.546  Sum_probs=37.6

Q ss_pred             CCccCCCChH----HHHHHHccCCchhhHHHhhhcHhHHH------hhccC
Q 043655           23 IDRISDLPDA----ILHHILFLLPIKSIAQTCTLSKRWRS------LWCSF   63 (512)
Q Consensus        23 ~D~is~LPde----vl~~Ils~L~~~d~~rts~lSrrWr~------lw~~~   63 (512)
                      .|.|+.||+|    |+.+||+||+.+++++++.|||+|++      +|+..
T Consensus         8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~   58 (435)
T 1p22_A            8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL   58 (435)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred             cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            5899999999    99999999999999999999999995      57754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.20  E-value=7.8e-06  Score=72.95  Aligned_cols=44  Identities=16%  Similarity=0.194  Sum_probs=24.1

Q ss_pred             CCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEee
Q 043655          155 LPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILF  203 (512)
Q Consensus       155 lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  203 (512)
                      +|..+..+++|++|+|++|.  +.-.+   ....+++|+.|+|+++.+.
T Consensus        40 l~~~~~~l~~L~~L~ls~n~--l~~l~---~~~~l~~L~~L~l~~n~l~   83 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNN--IEKIS---SLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEE--ESCCC---CHHHHTTCCEEEEEEEEEC
T ss_pred             hhHHHhcCCCCCEEECCCCC--Ccccc---ccccCCCCCEEECCCCCcc
Confidence            34445556677777776632  21111   2235667777777766665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.17  E-value=0.00054  Score=60.48  Aligned_cols=95  Identities=18%  Similarity=0.199  Sum_probs=52.4

Q ss_pred             ccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccc
Q 043655          148 ATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDA  227 (512)
Q Consensus       148 ~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~  227 (512)
                      .......+|..+..  +|+.|.|+++.. ..+++. .....+++|++|+|+++.+.+..  ...+  ..+++|+.|+|.+
T Consensus        16 s~~~l~~ip~~~~~--~l~~L~l~~n~i-~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~--~~~~--~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           16 TGRGLKEIPRDIPL--HTTELLLNDNEL-GRISSD-GLFGRLPHLVKLELKRNQLTGIE--PNAF--EGASHIQELQLGE   87 (192)
T ss_dssp             TTSCCSSCCSCCCT--TCSEEECCSCCC-CSBCCS-CSGGGCTTCCEEECCSSCCCCBC--TTTT--TTCTTCCEEECCS
T ss_pred             CCCCcCcCccCCCC--CCCEEECCCCcC-CccCCc-cccccCCCCCEEECCCCCCCCcC--HhHc--CCcccCCEEECCC
Confidence            33344556665433  788888887422 122221 12346788888888887776521  1111  3567777777776


Q ss_pred             cc--cc-chhcccccccceeeecccc
Q 043655          228 CY--GL-KQLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       228 ~~--~l-~~l~~~cp~Le~L~l~~c~  250 (512)
                      +.  ++ ...+...++|+.|+|.++.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCc
Confidence            64  11 1223455666666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.06  E-value=0.00068  Score=70.63  Aligned_cols=99  Identities=24%  Similarity=0.209  Sum_probs=59.7

Q ss_pred             CCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCc
Q 043655          139 NVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFP  218 (512)
Q Consensus       139 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p  218 (512)
                      .++.|++.  ......+|. +..+++|+.|+|++|... .+|.   ....+++|+.|+|+++.+.+-+.+      ..++
T Consensus       442 ~L~~L~Ls--~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~---~~~~l~~L~~L~Ls~N~l~~lp~l------~~l~  508 (567)
T 1dce_A          442 DVRVLHLA--HKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPP---ALAALRCLEVLQASDNALENVDGV------ANLP  508 (567)
T ss_dssp             TCSEEECT--TSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCG---GGGGCTTCCEEECCSSCCCCCGGG------TTCS
T ss_pred             CceEEEec--CCCCCCCcC-ccccccCcEeecCccccc-ccch---hhhcCCCCCEEECCCCCCCCCccc------CCCC
Confidence            44444443  233344665 556778888888775322 3332   234677888888887777653222      3577


Q ss_pred             ccceecccccc--cc--chhcccccccceeeecccc
Q 043655          219 HLKKLDLDACY--GL--KQLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       219 ~L~~L~L~~~~--~l--~~l~~~cp~Le~L~l~~c~  250 (512)
                      +|+.|+|.++.  ++  ...+..+++|+.|+|.++.
T Consensus       509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence            77777777764  33  3445567777777777764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.98  E-value=0.0009  Score=60.49  Aligned_cols=103  Identities=24%  Similarity=0.250  Sum_probs=66.9

Q ss_pred             CCceeEEEeccCCCCCCCc-ceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          139 NVEELDIEVATDDYFNLPR-CVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       139 ~v~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      +++.|++...  ....+|. .+..+++|+.|+|++|... .+.+..  ..++++|++|+|+++.+..-..  .++  ..+
T Consensus        33 ~l~~L~l~~n--~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~--~~~l~~L~~L~Ls~N~l~~l~~--~~f--~~l  103 (220)
T 2v9t_B           33 TITEIRLEQN--TIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDA--FQGLRSLNSLVLYGNKITELPK--SLF--EGL  103 (220)
T ss_dssp             TCCEEECCSS--CCCEECTTSSTTCTTCCEEECCSSCCC-EECTTT--TTTCSSCCEEECCSSCCCCCCT--TTT--TTC
T ss_pred             CCCEEECCCC--cCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHH--hhCCcCCCEEECCCCcCCccCH--hHc--cCC
Confidence            4555655432  2223443 3335789999999985322 232222  3578999999999988875221  112  368


Q ss_pred             cccceecccccc--cc-chhcccccccceeeecccc
Q 043655          218 PHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       218 p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~  250 (512)
                      ++|+.|+|.++.  ++ ...+..+++|+.|+|.++.
T Consensus       104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  139 (220)
T 2v9t_B          104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK  139 (220)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence            999999999886  22 2345678899999988875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.87  E-value=0.00016  Score=64.29  Aligned_cols=14  Identities=29%  Similarity=0.192  Sum_probs=8.8

Q ss_pred             CCCcceEEeecccc
Q 043655          284 ASKLKVLNWEYNAI  297 (512)
Q Consensus       284 ~p~L~~L~~~~~~~  297 (512)
                      .++|++|.+.++.+
T Consensus       139 l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          139 LDKLEDLLLAGNPL  152 (198)
T ss_dssp             TTTCSEEEECSCHH
T ss_pred             CCCCCEEEecCCcc
Confidence            46677777666543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.85  E-value=0.0019  Score=56.99  Aligned_cols=96  Identities=17%  Similarity=0.163  Sum_probs=55.4

Q ss_pred             EEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceec
Q 043655          145 IEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLD  224 (512)
Q Consensus       145 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~  224 (512)
                      +.+.......+|..+.  ++|+.|.|+++... .+| .  ....+++|+.|+|+++.+..-..  ..+  ..+++|+.|+
T Consensus        15 l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip-~--~~~~l~~L~~L~Ls~N~i~~i~~--~~f--~~l~~L~~L~   84 (193)
T 2wfh_A           15 VRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVP-K--ELSNYKHLTLIDLSNNRISTLSN--QSF--SNMTQLLTLI   84 (193)
T ss_dssp             EECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCC-G--GGGGCTTCCEEECCSSCCCCCCT--TTT--TTCTTCCEEE
T ss_pred             EEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhH-H--HhhcccCCCEEECCCCcCCEeCH--hHc--cCCCCCCEEE
Confidence            3333344455665443  57888888874221 222 1  23567888888888877765211  111  3567777777


Q ss_pred             ccccc--ccc-hhcccccccceeeecccc
Q 043655          225 LDACY--GLK-QLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       225 L~~~~--~l~-~l~~~cp~Le~L~l~~c~  250 (512)
                      |.++.  .+. ..+..+++|+.|+|.++.
T Consensus        85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  113 (193)
T 2wfh_A           85 LSYNRLRCIPPRTFDGLKSLRLLSLHGND  113 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCccCEeCHHHhCCCCCCCEEECCCCC
Confidence            77765  222 234556777777777764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.81  E-value=2.1e-05  Score=77.50  Aligned_cols=86  Identities=21%  Similarity=0.129  Sum_probs=50.7

Q ss_pred             cCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCc--cchhhhhcCCCCcccceecccccc----c---cc
Q 043655          162 SDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQ--PCLLDLFTDSSFPHLKKLDLDACY----G---LK  232 (512)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~l~~l~~~~~~p~L~~L~L~~~~----~---l~  232 (512)
                      +++|++|+|++|.  +...........+++|++|+|++|.+.+.  ..+...+. ..+++|++|+|.+|.    +   +.
T Consensus       100 ~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~-~~~~~L~~L~Ls~n~l~~~~~~~l~  176 (372)
T 3un9_A          100 RHALDEVNLASCQ--LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL-HDQCQITTLRLSNNPLTAAGVAVLM  176 (372)
T ss_dssp             SSCEEEEECTTCC--CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH-STTCCCCEEECCSSCCHHHHHHHHH
T ss_pred             CCCceEEEecCCC--CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH-hcCCccceeeCCCCCCChHHHHHHH
Confidence            3678888888742  21111111233567888888888877543  12222221 346788888888775    1   22


Q ss_pred             hhcccccccceeeecccc
Q 043655          233 QLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       233 ~l~~~cp~Le~L~l~~c~  250 (512)
                      ..+..++.|++|+|.+|.
T Consensus       177 ~~L~~~~~L~~L~Ls~N~  194 (372)
T 3un9_A          177 EGLAGNTSVTHLSLLHTG  194 (372)
T ss_dssp             HHHHTCSSCCEEECTTSS
T ss_pred             HHHhcCCCcCEEeCCCCC
Confidence            233567788888888875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.80  E-value=0.0023  Score=55.36  Aligned_cols=91  Identities=24%  Similarity=0.253  Sum_probs=50.1

Q ss_pred             CCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc-
Q 043655          151 DYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY-  229 (512)
Q Consensus       151 ~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~-  229 (512)
                      ....+|..+.  ++|+.|+|+++... .+++.  ....+++|++|+|+++.+..-..  ..+  ..+++|+.|+|.++. 
T Consensus        18 ~l~~~p~~~~--~~l~~L~l~~n~l~-~~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~--~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           18 GLTSVPTGIP--SSATRLELESNKLQ-SLPHG--VFDKLTQLTKLSLSQNQIQSLPD--GVF--DKLTKLTILYLHENKL   88 (177)
T ss_dssp             CCSSCCTTCC--TTCSEEECCSSCCC-CCCTT--TTTTCTTCSEEECCSSCCCCCCT--TTT--TTCTTCCEEECCSSCC
T ss_pred             CCccCCCCCC--CCCcEEEeCCCccc-EeCHH--HhcCcccccEEECCCCcceEeCh--hHc--cCCCccCEEECCCCCc
Confidence            3344554433  57888888874221 22221  12457788888888777654211  111  256777777776654 


Q ss_pred             -cc-chhcccccccceeeecccc
Q 043655          230 -GL-KQLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       230 -~l-~~l~~~cp~Le~L~l~~c~  250 (512)
                       ++ ...+..+++|+.|++.++.
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~N~  111 (177)
T 2o6r_A           89 QSLPNGVFDKLTQLKELALDTNQ  111 (177)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccCHHHhhCCcccCEEECcCCc
Confidence             22 1233456667777766653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.71  E-value=0.0013  Score=63.35  Aligned_cols=100  Identities=13%  Similarity=0.101  Sum_probs=62.8

Q ss_pred             CCCcceEEeeccccCC--CccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCccc-Eeeecchhhhhhcccccc
Q 043655          284 ASKLKVLNWEYNAITA--SSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHAR-SLTLESPCIEILSNRNYF  360 (512)
Q Consensus       284 ~p~L~~L~~~~~~~~~--~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~L~l~~~~~~~~~~~~~~  360 (512)
                      +++|+++++.++.+..  ...+.++.+|+++.+....  ....       ...+.+|++|+ .+.+.. .+..+..    
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni--~~I~-------~~aF~~~~~L~~~l~l~~-~l~~I~~----  290 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNL--KTIG-------QRVFSNCGRLAGTLELPA-SVTAIEF----  290 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTC--CEEC-------TTTTTTCTTCCEEEEECT-TCCEECT----
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCccc--ceeh-------HHHhhCChhccEEEEEcc-cceEEch----
Confidence            6889999988754432  2457789999998885421  1000       12477889999 999976 3333322    


Q ss_pred             cccccccccceEEEEeeccCCcHHHH-HHHHhhCCCCcEEEE
Q 043655          361 TNLHTFTNLKSLELHTGFNKHNVQGL-ACLFRSSPSIHTLIL  401 (512)
Q Consensus       361 ~~~~~~~~L~~L~L~~~~~~~~~~~l-~~~L~~cp~Le~L~l  401 (512)
                      .....+++|+.|.+....-    ..+ ...+.+|++|++|..
T Consensus       291 ~aF~~c~~L~~l~l~~n~i----~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          291 GAFMGCDNLRYVLATGDKI----TTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTTTCTTEEEEEECSSCC----CEECTTTTCTTCCCCEEEC
T ss_pred             hhhhCCccCCEEEeCCCcc----CccchhhhcCCcchhhhcc
Confidence            2445778899998843211    111 224678999999863

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.64  E-value=0.0025  Score=61.99  Aligned_cols=210  Identities=14%  Similarity=0.099  Sum_probs=105.4

Q ss_pred             cCCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEE-eeeEEeeC--ccchhhhhc
Q 043655          138 HNVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLS-LSLVILFN--QPCLLDLFT  213 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~-L~~~~~~~--~~~l~~l~~  213 (512)
                      .++++|++...  ....+|...| .+++|++|+|++|...-.+++..  ..++++|+++. +.++.+..  .+.+     
T Consensus        30 ~~l~~L~Ls~N--~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~--f~~L~~l~~~l~~~~N~l~~l~~~~f-----  100 (350)
T 4ay9_X           30 RNAIELRFVLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV--FSNLPKLHEIRIEKANNLLYINPEAF-----  100 (350)
T ss_dssp             TTCSEEEEESC--CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS--BCSCTTCCEEEEEEETTCCEECTTSB-----
T ss_pred             CCCCEEEccCC--cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH--hhcchhhhhhhcccCCcccccCchhh-----
Confidence            45666766632  2335565444 57888888888753222233321  23456655533 33333322  1112     


Q ss_pred             CCCCcccceecccccc--ccc-hhcccccccceeeeccccCccceeEe-----ccCcceEEEeeeccccCCCceEEEeCC
Q 043655          214 DSSFPHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNCIQLCGLDIF-----GTKLERLRVASCFDAYCDKSWVKIDAS  285 (512)
Q Consensus       214 ~~~~p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~~l~~~~v~-----~~~L~~L~l~~c~~~~~~~~~~~i~~p  285 (512)
                       ..+++|+.|++.++.  .+. ........+..|.+.++..+..+...     ...++.|.+.++........  ....+
T Consensus       101 -~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~--~f~~~  177 (350)
T 4ay9_X          101 -QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS--AFNGT  177 (350)
T ss_dssp             -CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT--SSTTE
T ss_pred             -hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh--hcccc
Confidence             367888888887764  121 12234456667777666554443322     13566676665432110000  01234


Q ss_pred             CcceEEeecc-ccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchh-hhhhccccccc
Q 043655          286 KLKVLNWEYN-AITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPC-IEILSNRNYFT  361 (512)
Q Consensus       286 ~L~~L~~~~~-~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~-~~~~~~~~~~~  361 (512)
                      +|+.+.+.+. .+...  ..+.++++|+.++++......-.           ...+.+++.|.+.... ++.+.      
T Consensus       178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp-----------~~~~~~L~~L~~l~~~~l~~lP------  240 (350)
T 4ay9_X          178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP-----------SYGLENLKKLRARSTYNLKKLP------  240 (350)
T ss_dssp             EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC-----------SSSCTTCCEEECTTCTTCCCCC------
T ss_pred             chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC-----------hhhhccchHhhhccCCCcCcCC------
Confidence            5677776543 22222  23567888888888754321100           1224455665544321 22211      


Q ss_pred             ccccccccceEEEEe
Q 043655          362 NLHTFTNLKSLELHT  376 (512)
Q Consensus       362 ~~~~~~~L~~L~L~~  376 (512)
                      ....+++|+.+.+..
T Consensus       241 ~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          241 TLEKLVALMEASLTY  255 (350)
T ss_dssp             CTTTCCSCCEEECSC
T ss_pred             CchhCcChhhCcCCC
Confidence            455788888888753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.63  E-value=0.0036  Score=55.18  Aligned_cols=104  Identities=20%  Similarity=0.187  Sum_probs=69.9

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      .+++.|++...  ....+|..+..+++|++|+|++|... .+++.  ...++++|++|+|+++.+..-..  ..+  ..+
T Consensus        31 ~~l~~L~L~~n--~i~~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~--~f~~l~~L~~L~Ls~N~l~~i~~--~~f--~~l  101 (193)
T 2wfh_A           31 RDVTELYLDGN--QFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQ--SFSNMTQLLTLILSYNRLRCIPP--RTF--DGL  101 (193)
T ss_dssp             TTCCEEECCSS--CCCSCCGGGGGCTTCCEEECCSSCCC-CCCTT--TTTTCTTCCEEECCSSCCCBCCT--TTT--TTC
T ss_pred             CCCCEEECCCC--cCchhHHHhhcccCCCEEECCCCcCC-EeCHh--HccCCCCCCEEECCCCccCEeCH--HHh--CCC
Confidence            35666665533  33467766678899999999985322 23322  23578999999999988876321  111  468


Q ss_pred             cccceecccccc--ccc-hhcccccccceeeecccc
Q 043655          218 PHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       218 p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~  250 (512)
                      ++|+.|+|.++.  .+. ..+..+++|+.|++.++.
T Consensus       102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          102 KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            999999999876  222 245567888888888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.56  E-value=0.0023  Score=62.62  Aligned_cols=123  Identities=19%  Similarity=0.035  Sum_probs=77.4

Q ss_pred             CCceeEEEeccCCCCCCCccee--ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          139 NVEELDIEVATDDYFNLPRCVI--TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       139 ~v~~L~l~~~~~~~~~lp~~l~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      .++.|++..  .....++...+  .+++|++|+|++|.. -.+++..  ...+++|++|+|+++.+..-..  ..+  ..
T Consensus        40 ~l~~L~Ls~--N~l~~l~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~--~~~l~~L~~L~Ls~N~l~~~~~--~~~--~~  110 (361)
T 2xot_A           40 YTALLDLSH--NNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEA--FVPVPNLRYLDLSSNHLHTLDE--FLF--SD  110 (361)
T ss_dssp             TCSEEECCS--SCCCEECTTSSSSCCTTCCEEECCSSCC-CEECTTT--TTTCTTCCEEECCSSCCCEECT--TTT--TT
T ss_pred             CCCEEECCC--CCCCccChhhhhhcccccCEEECCCCcC-CccChhh--ccCCCCCCEEECCCCcCCcCCH--HHh--CC
Confidence            345555542  22333444433  678999999998532 1333322  3468899999999888764211  112  46


Q ss_pred             Ccccceecccccc--cc-chhcccccccceeeeccccCcccee-------EeccCcceEEEeeec
Q 043655          217 FPHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCIQLCGLD-------IFGTKLERLRVASCF  271 (512)
Q Consensus       217 ~p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l~~~~-------v~~~~L~~L~l~~c~  271 (512)
                      +++|+.|+|.++.  .+ ...+..+++|+.|+|.++.. ..+.       -..++|+.|.+.++.
T Consensus       111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCCC
Confidence            8999999999886  22 34456789999999998853 2221       124788888887753

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.54  E-value=0.0045  Score=53.28  Aligned_cols=95  Identities=19%  Similarity=0.223  Sum_probs=53.0

Q ss_pred             eccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccc
Q 043655          147 VATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLD  226 (512)
Q Consensus       147 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~  226 (512)
                      +.......+|..+.  ++|++|+|++|... .+++.  ....+++|++|+|+++.+..-..  ..+  ..+++|+.|+|.
T Consensus        16 ~s~n~l~~ip~~~~--~~l~~L~L~~N~i~-~~~~~--~~~~l~~L~~L~Ls~N~l~~l~~--~~f--~~l~~L~~L~L~   86 (170)
T 3g39_A           16 CSGKSLASVPTGIP--TTTQVLYLYDNQIT-KLEPG--VFDRLTQLTRLDLDNNQLTVLPA--GVF--DKLTQLTQLSLN   86 (170)
T ss_dssp             CTTSCCSSCCSCCC--TTCSEEECCSSCCC-CCCTT--TTTTCTTCSEEECCSSCCCCCCT--TTT--TTCTTCCEEECC
T ss_pred             eCCCCcCccCccCC--CCCcEEEcCCCcCC-ccChh--hhcCcccCCEEECCCCCcCccCh--hhc--cCCCCCCEEECC
Confidence            33344455665543  67888888874221 22222  13457788888888777764211  111  256777777777


Q ss_pred             ccc--ccc-hhcccccccceeeecccc
Q 043655          227 ACY--GLK-QLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       227 ~~~--~l~-~l~~~cp~Le~L~l~~c~  250 (512)
                      ++.  .+. ..+..+++|+.|+|.++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            664  222 234456667666666653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.52  E-value=0.0033  Score=55.31  Aligned_cols=103  Identities=16%  Similarity=0.111  Sum_probs=66.6

Q ss_pred             CCceeEEEeccCCCCCCCcc--eeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          139 NVEELDIEVATDDYFNLPRC--VITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       139 ~v~~L~l~~~~~~~~~lp~~--l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      .++.|.+...  ....++..  +...++|++|+|++|... .+++.  ...++++|++|+|+++.+.+...  ..+  ..
T Consensus        30 ~l~~L~l~~n--~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~--~~~--~~  100 (192)
T 1w8a_A           30 HTTELLLNDN--ELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPN--AFEGASHIQELQLGENKIKEISN--KMF--LG  100 (192)
T ss_dssp             TCSEEECCSC--CCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTT--TTTTCTTCCEEECCSCCCCEECS--SSS--TT
T ss_pred             CCCEEECCCC--cCCccCCccccccCCCCCEEECCCCCCC-CcCHh--HcCCcccCCEEECCCCcCCccCH--HHh--cC
Confidence            4555555432  22334432  447899999999985322 22222  23468999999999988875321  111  36


Q ss_pred             Ccccceecccccc--cc-chhcccccccceeeecccc
Q 043655          217 FPHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       217 ~p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~  250 (512)
                      +++|+.|+|.++.  ++ ...+...++|+.|+|.++.
T Consensus       101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            8999999999886  22 3345567888888888765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.48  E-value=0.0051  Score=53.17  Aligned_cols=94  Identities=18%  Similarity=0.200  Sum_probs=51.7

Q ss_pred             ccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccc
Q 043655          148 ATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDA  227 (512)
Q Consensus       148 ~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~  227 (512)
                      .......+|..+.  ++|++|+|++|... .+++.  ....+++|++|+|+++.+.+-..  ..+  ..+++|+.|+|.+
T Consensus        20 ~~n~l~~iP~~~~--~~L~~L~Ls~N~l~-~~~~~--~~~~l~~L~~L~Ls~N~l~~i~~--~~~--~~l~~L~~L~L~~   90 (174)
T 2r9u_A           20 QNIRLASVPAGIP--TDKQRLWLNNNQIT-KLEPG--VFDHLVNLQQLYFNSNKLTAIPT--GVF--DKLTQLTQLDLND   90 (174)
T ss_dssp             CSSCCSSCCSCCC--TTCSEEECCSSCCC-CCCTT--TTTTCTTCCEEECCSSCCCCCCT--TTT--TTCTTCCEEECCS
T ss_pred             CCCCCCccCCCcC--CCCcEEEeCCCCcc-ccCHH--HhcCCcCCCEEECCCCCCCccCh--hHh--CCcchhhEEECCC
Confidence            3333445665543  67888888874221 22222  13457788888888777665211  111  2567777777766


Q ss_pred             cc--ccc-hhcccccccceeeecccc
Q 043655          228 CY--GLK-QLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       228 ~~--~l~-~l~~~cp~Le~L~l~~c~  250 (512)
                      +.  .+. ..+..+++|+.|+|.++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCC
Confidence            54  222 224456666666666653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.18  E-value=0.0088  Score=51.62  Aligned_cols=104  Identities=22%  Similarity=0.262  Sum_probs=66.6

Q ss_pred             cCCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      .+++.|++....  ...+|...+ .+++|++|+|++|... .+++.  ....+++|++|+|+++.+.+...  ..+  ..
T Consensus        28 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~--~~~~l~~L~~L~l~~N~l~~~~~--~~~--~~   98 (177)
T 2o6r_A           28 SSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDG--VFDKLTKLTILYLHENKLQSLPN--GVF--DK   98 (177)
T ss_dssp             TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCC-CCCTT--TTTTCTTCCEEECCSSCCCCCCT--TTT--TT
T ss_pred             CCCcEEEeCCCc--ccEeCHHHhcCcccccEEECCCCcce-EeChh--HccCCCccCEEECCCCCccccCH--HHh--hC
Confidence            356666655322  234555443 6789999999985321 23322  13468999999999988775321  111  36


Q ss_pred             Ccccceecccccc--ccc-hhcccccccceeeecccc
Q 043655          217 FPHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       217 ~p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~  250 (512)
                      +++|+.|+|.++.  ++. .++..+++|+.|++.++.
T Consensus        99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence            8999999998875  222 234567888888888875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.12  E-value=0.0022  Score=68.92  Aligned_cols=101  Identities=20%  Similarity=0.096  Sum_probs=59.1

Q ss_pred             CCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCc
Q 043655          139 NVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFP  218 (512)
Q Consensus       139 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p  218 (512)
                      .++.|+|.  ......+|..++.+++|++|+|++|... .+|.   ....+++|+.|+|+++.+..-   ..-+  ..++
T Consensus       225 ~L~~L~Ls--~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~---~~~~l~~L~~L~Ls~N~l~~l---p~~~--~~l~  293 (727)
T 4b8c_D          225 LWHALDLS--NLQIFNISANIFKYDFLTRLYLNGNSLT-ELPA---EIKNLSNLRVLDLSHNRLTSL---PAEL--GSCF  293 (727)
T ss_dssp             CCCEEECT--TSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCG---GGGGGTTCCEEECTTSCCSSC---CSSG--GGGT
T ss_pred             CCcEEECC--CCCCCCCChhhcCCCCCCEEEeeCCcCc-ccCh---hhhCCCCCCEEeCcCCcCCcc---Chhh--cCCC
Confidence            34444443  3333467777777777777777775322 3332   124577777777777776531   1111  2567


Q ss_pred             ccceecccccc--ccchhcccccccceeeecccc
Q 043655          219 HLKKLDLDACY--GLKQLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       219 ~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~  250 (512)
                      +|+.|+|.++.  .+..-+..+++|+.|+|.++.
T Consensus       294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             CCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence            77777777764  333335566777777777764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.09  E-value=0.018  Score=56.98  Aligned_cols=107  Identities=15%  Similarity=0.142  Sum_probs=50.2

Q ss_pred             CCcceEEeecccc-CCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccc
Q 043655          285 SKLKVLNWEYNAI-TASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNL  363 (512)
Q Consensus       285 p~L~~L~~~~~~~-~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~  363 (512)
                      .+|+.+.+..... -....+.++++|+.+.+.......+..   ..--...+.+|++|+.+.+... ++.+..    ...
T Consensus       248 ~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~---~~I~~~aF~~c~~L~~l~l~~~-i~~I~~----~aF  319 (401)
T 4fdw_A          248 SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPE---AMIHPYCLEGCPKLARFEIPES-IRILGQ----GLL  319 (401)
T ss_dssp             CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTT---CEECTTTTTTCTTCCEECCCTT-CCEECT----TTT
T ss_pred             CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcc---cEECHHHhhCCccCCeEEeCCc-eEEEhh----hhh
Confidence            3555555532110 012345567777777664322110000   0000123667777888777632 222221    133


Q ss_pred             ccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655          364 HTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII  404 (512)
Q Consensus       364 ~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~  404 (512)
                      ..+.+|+.|.|.......+    ...+..| +|++|.+...
T Consensus       320 ~~c~~L~~l~lp~~l~~I~----~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          320 GGNRKVTQLTIPANVTQIN----FSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             TTCCSCCEEEECTTCCEEC----TTSSSSS-CCCEEEECCS
T ss_pred             cCCCCccEEEECccccEEc----HHhCCCC-CCCEEEEcCC
Confidence            4566777777732211100    1234577 8888887653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.07  E-value=0.0024  Score=55.97  Aligned_cols=96  Identities=13%  Similarity=0.059  Sum_probs=60.4

Q ss_pred             cCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEE--EeeccC-
Q 043655          304 ENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLEL--HTGFNK-  380 (512)
Q Consensus       304 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L--~~~~~~-  380 (512)
                      ...+.|++++++.+...+.    ....+...+...++|+.|+|+.+.+...........+...++|++|+|  ..+.-. 
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~----g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDP----VAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHH----HHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HhCCCcCEEECcCCCCChH----HHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence            3456677777765543322    123456677778889999998876433221111134456678999999  433211 


Q ss_pred             CcHHHHHHHHhhCCCCcEEEEEe
Q 043655          381 HNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       381 ~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      .....+...++.+++|++|++..
T Consensus       138 ~g~~~l~~~L~~n~~L~~L~L~~  160 (185)
T 1io0_A          138 NVEMEIANMLEKNTTLLKFGYHF  160 (185)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHHHHhCCCcCEEeccC
Confidence            23345778899999999999864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.76  E-value=0.021  Score=56.62  Aligned_cols=123  Identities=10%  Similarity=0.125  Sum_probs=58.4

Q ss_pred             cccccccceeeeccccCcccee---EeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccC-------CCcccc
Q 043655          235 KVGCRALEDLTLDNCIQLCGLD---IFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAIT-------ASSSLE  304 (512)
Q Consensus       235 ~~~cp~Le~L~l~~c~~l~~~~---v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~-------~~~~l~  304 (512)
                      +.+|++|+.+.+...  +..+.   ....+|+.+.+...... . ....-..+++|+.+.+.+....       ....+.
T Consensus       222 F~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~i~~-I-~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~  297 (401)
T 4fdw_A          222 FLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPNGVTN-I-ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE  297 (401)
T ss_dssp             TTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEETTCCE-E-CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred             hhCCCCCCEEecCCC--ccCccccccccCCccEEEeCCCccE-E-ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence            445666666666541  22111   11246666666331100 0 0000114677777777654321       123456


Q ss_pred             CcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEe
Q 043655          305 NLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHT  376 (512)
Q Consensus       305 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  376 (512)
                      ++++|+.+.+....  ....       ...+.+|++|+.+.|... +..+..    .....+ +|+.|.+..
T Consensus       298 ~c~~L~~l~l~~~i--~~I~-------~~aF~~c~~L~~l~lp~~-l~~I~~----~aF~~~-~L~~l~l~~  354 (401)
T 4fdw_A          298 GCPKLARFEIPESI--RILG-------QGLLGGNRKVTQLTIPAN-VTQINF----SAFNNT-GIKEVKVEG  354 (401)
T ss_dssp             TCTTCCEECCCTTC--CEEC-------TTTTTTCCSCCEEEECTT-CCEECT----TSSSSS-CCCEEEECC
T ss_pred             CCccCCeEEeCCce--EEEh-------hhhhcCCCCccEEEECcc-ccEEcH----HhCCCC-CCCEEEEcC
Confidence            77777777664210  0000       123666777887777533 222211    133345 777777754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=95.72  E-value=0.0031  Score=67.85  Aligned_cols=106  Identities=15%  Similarity=0.047  Sum_probs=64.0

Q ss_pred             CcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccch
Q 043655          156 PRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQ  233 (512)
Q Consensus       156 p~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~  233 (512)
                      |..+..++.|+.|+|++|... .++..   ...+++|++|+|+++.+..-   ..-+  ..+++|+.|+|.++.  .+..
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~---~~~l~~L~~L~Ls~N~l~~l---p~~~--~~l~~L~~L~Ls~N~l~~lp~  287 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISAN---IFKYDFLTRLYLNGNSLTEL---PAEI--KNLSNLRVLDLSHNRLTSLPA  287 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGG---GGGCCSCSCCBCTTSCCSCC---CGGG--GGGTTCCEEECTTSCCSSCCS
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChh---hcCCCCCCEEEeeCCcCccc---Chhh--hCCCCCCEEeCcCCcCCccCh
Confidence            444456788888888885322 33332   23688888888888877632   1112  257888888888876  3434


Q ss_pred             hcccccccceeeeccccCcccee--Ee-ccCcceEEEeeec
Q 043655          234 LKVGCRALEDLTLDNCIQLCGLD--IF-GTKLERLRVASCF  271 (512)
Q Consensus       234 l~~~cp~Le~L~l~~c~~l~~~~--v~-~~~L~~L~l~~c~  271 (512)
                      -+..+++|+.|+|.+|. +..+.  +. .++|+.|.|.++.
T Consensus       288 ~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          288 ELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSC
T ss_pred             hhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCc
Confidence            45677888888888874 23221  11 2577777776653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.96  E-value=0.022  Score=55.08  Aligned_cols=91  Identities=20%  Similarity=0.190  Sum_probs=57.4

Q ss_pred             CCCCCCcceeccCCccEEEEec-ccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc
Q 043655          151 DYFNLPRCVITSDSLRVFKLRS-RYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY  229 (512)
Q Consensus       151 ~~~~lp~~l~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~  229 (512)
                      ....+|. +..+++|+.|+|++ |.. -.+++.  ...++++|+.|+|+++.+.+-.  ...+  ..+++|+.|+|.++.
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l-~~~~~~--~~~~l~~L~~L~l~~N~l~~~~--~~~~--~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHL-QHLELR--DLRGLGELRNLTIVKSGLRFVA--PDAF--HFTPRLSRLNLSFNA   91 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSC-CEECGG--GSCSCCCCSEEECCSSCCCEEC--TTGG--GSCSCCCEEECCSSC
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCC-CCcChh--HhccccCCCEEECCCCccceeC--HHHh--cCCcCCCEEeCCCCc
Confidence            4556787 66788899999984 422 233322  1346889999999988776521  1112  368889999998875


Q ss_pred             --ccc-hhcccccccceeeecccc
Q 043655          230 --GLK-QLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       230 --~l~-~l~~~cp~Le~L~l~~c~  250 (512)
                        .+. .++... .|+.|.|.++.
T Consensus        92 l~~~~~~~~~~~-~L~~l~l~~N~  114 (347)
T 2ifg_A           92 LESLSWKTVQGL-SLQELVLSGNP  114 (347)
T ss_dssp             CSCCCSTTTCSC-CCCEEECCSSC
T ss_pred             cceeCHHHcccC-CceEEEeeCCC
Confidence              222 122222 38888887754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=94.33  E-value=0.039  Score=47.25  Aligned_cols=100  Identities=15%  Similarity=0.164  Sum_probs=61.2

Q ss_pred             CCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccc
Q 043655          285 SKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTN  362 (512)
Q Consensus       285 p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~  362 (512)
                      ++|++|.++++.+...  ..+.++++|+.++++......-.        ...+..+++|+.|+++.+.+..+..    ..
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--------~~~f~~l~~L~~L~L~~N~l~~~~~----~~   97 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP--------AGVFDKLTQLTQLSLNDNQLKSIPR----GA   97 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCCT----TT
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC--------hhhccCCCCCCEEECCCCccCEeCH----HH
Confidence            4566666666554332  23567777777777655432211        1235678889999998877554332    13


Q ss_pred             cccccccceEEEEeeccCC---cHHHHHHHHhhCCCC
Q 043655          363 LHTFTNLKSLELHTGFNKH---NVQGLACLFRSSPSI  396 (512)
Q Consensus       363 ~~~~~~L~~L~L~~~~~~~---~~~~l~~~L~~cp~L  396 (512)
                      ...+++|++|+|....-.+   +...+..+++.-+.+
T Consensus        98 ~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~  134 (170)
T 3g39_A           98 FDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGL  134 (170)
T ss_dssp             TTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGG
T ss_pred             hcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcce
Confidence            4567899999997653222   356677777776654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.19  E-value=0.053  Score=53.47  Aligned_cols=99  Identities=15%  Similarity=0.167  Sum_probs=50.7

Q ss_pred             CCCcceEEeeccccCCCccccCcccceeeEEeeEEc-ccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccc
Q 043655          284 ASKLKVLNWEYNAITASSSLENLASLHEASVGFILL-HEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTN  362 (512)
Q Consensus       284 ~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~  362 (512)
                      ++.++.+.+....+. ...+.++.+|+++.+..... .++          ..+.+|.+|+.++|... ++.+..    ..
T Consensus       275 ~~~l~~~~~~~~~i~-~~~F~~~~~L~~i~l~~~i~~I~~----------~aF~~c~~L~~i~lp~~-v~~I~~----~a  338 (394)
T 4fs7_A          275 CSGLKKVIYGSVIVP-EKTFYGCSSLTEVKLLDSVKFIGE----------EAFESCTSLVSIDLPYL-VEEIGK----RS  338 (394)
T ss_dssp             CTTCCEEEECSSEEC-TTTTTTCTTCCEEEECTTCCEECT----------TTTTTCTTCCEECCCTT-CCEECT----TT
T ss_pred             ccccceeccCceeec-cccccccccccccccccccceech----------hhhcCCCCCCEEEeCCc-ccEEhH----Hh
Confidence            344555544433222 23355677787776632110 011          13667888888888532 222221    13


Q ss_pred             cccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655          363 LHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK  402 (512)
Q Consensus       363 ~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~  402 (512)
                      ...+.+|+.+.|......-+    ...+..|++|+++.|.
T Consensus       339 F~~c~~L~~i~lp~~l~~I~----~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          339 FRGCTSLSNINFPLSLRKIG----ANAFQGCINLKKVELP  374 (394)
T ss_dssp             TTTCTTCCEECCCTTCCEEC----TTTBTTCTTCCEEEEE
T ss_pred             ccCCCCCCEEEECccccEeh----HHHhhCCCCCCEEEEC
Confidence            34566777777632111100    1235788999988874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=94.01  E-value=0.049  Score=47.40  Aligned_cols=131  Identities=12%  Similarity=0.084  Sum_probs=72.3

Q ss_pred             hHHHHHhhcCCcccEeeecch-hhhhhcccccccccccccccceEEEEeeccC-CcHHHHHHHHhhCCCCcEEEEEeecc
Q 043655          329 QSVSNFLSGLSHARSLTLESP-CIEILSNRNYFTNLHTFTNLKSLELHTGFNK-HNVQGLACLFRSSPSIHTLILKIIND  406 (512)
Q Consensus       329 ~~~~~~l~~l~~l~~L~l~~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~l~~~L~~cp~Le~L~l~~~~~  406 (512)
                      ..+...+...++++.|+++.+ .+...........+...++|++|+|+.+.-. .....+...++..++|++|+|....-
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            345677788888888888776 4322111111123344668888888754322 22345677788888999988864211


Q ss_pred             cchhhhcccccccCccCccchhhhhccccCchhhhcCccEEEE--eeec-cchhHHHHHHHHHhcCccccceEEEec
Q 043655          407 YKIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEI--HGFL-ECENEVSLAKFLLKHGKALQEMTLCTG  480 (512)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i--~~~~-g~~~e~~l~~~ll~~a~~L~~m~i~~~  480 (512)
                      .                   +........... ...+|+++.+  .+-. +.+....+++ .++..+.|+.+.+...
T Consensus       106 ~-------------------~~g~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          106 S-------------------GSGILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             C-------------------HHHHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCS
T ss_pred             C-------------------HHHHHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCC
Confidence            0                   000000000000 1357888888  4333 3344444554 5556677999988654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=93.34  E-value=0.03  Score=51.81  Aligned_cols=38  Identities=26%  Similarity=0.168  Sum_probs=19.0

Q ss_pred             cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc
Q 043655          188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY  229 (512)
Q Consensus       188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~  229 (512)
                      .+++|+.|+|+++.+.+...+..+   ..+ +|+.|+|.++.
T Consensus       194 ~l~~L~~L~Ls~N~i~~~~~l~~l---~~l-~L~~L~L~~Np  231 (267)
T 3rw6_A          194 KAPNLKILNLSGNELKSERELDKI---KGL-KLEELWLDGNS  231 (267)
T ss_dssp             HSTTCCEEECTTSCCCSGGGGGGG---TTS-CCSEEECTTST
T ss_pred             hCCCCCEEECCCCccCCchhhhhc---ccC-CcceEEccCCc
Confidence            466666666666665544333322   122 55555555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=93.07  E-value=0.053  Score=46.59  Aligned_cols=98  Identities=13%  Similarity=0.127  Sum_probs=56.9

Q ss_pred             CCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccc
Q 043655          285 SKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTN  362 (512)
Q Consensus       285 p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~  362 (512)
                      ++|+.|.++++.+...  ..+.++++|+.++++......-.        ...+..+++|+.|+++.+.+..+..    ..
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~--------~~~~~~l~~L~~L~L~~N~l~~l~~----~~  100 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP--------TGVFDKLTQLTQLDLNDNHLKSIPR----GA  100 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCCT----TT
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC--------hhHhCCcchhhEEECCCCccceeCH----HH
Confidence            4566666665554332  23566777777777655432210        1235677888888888776544322    13


Q ss_pred             cccccccceEEEEeeccCC---cHHHHHHHHhhCC
Q 043655          363 LHTFTNLKSLELHTGFNKH---NVQGLACLFRSSP  394 (512)
Q Consensus       363 ~~~~~~L~~L~L~~~~~~~---~~~~l~~~L~~cp  394 (512)
                      +..+++|++|+|....-..   +...+..+++.-+
T Consensus       101 ~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~  135 (174)
T 2r9u_A          101 FDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHT  135 (174)
T ss_dssp             TTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCG
T ss_pred             hccccCCCEEEeCCCCcccccccHHHHHHHHHhcc
Confidence            4567889999887643222   3455666665444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=88.72  E-value=0.16  Score=46.87  Aligned_cols=60  Identities=27%  Similarity=0.300  Sum_probs=34.0

Q ss_pred             cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhccccc--ccceeeecccc
Q 043655          188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCR--ALEDLTLDNCI  250 (512)
Q Consensus       188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp--~Le~L~l~~c~  250 (512)
                      .+++|++|+|+++.+.+-..+..++.  .+|+|+.|+|.++.  ++..+ ....  .|++|.|.++.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~--~l~~L~~L~Ls~N~i~~~~~l-~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQ--KAPNLKILNLSGNELKSEREL-DKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHH--HSTTCCEEECTTSCCCSGGGG-GGGTTSCCSEEECTTST
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHh--hCCCCCEEECCCCccCCchhh-hhcccCCcceEEccCCc
Confidence            47788888888777766444433332  56777777776654  22111 1111  56666665554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=87.99  E-value=0.25  Score=47.48  Aligned_cols=79  Identities=16%  Similarity=0.074  Sum_probs=51.9

Q ss_pred             ccCcccceEEeee-EEeeCccchhhhhcCCCCcccceecccccc--cc-chhcccccccceeeeccccCcccee---Eec
Q 043655          187 GGFRSLHTLSLSL-VILFNQPCLLDLFTDSSFPHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCIQLCGLD---IFG  259 (512)
Q Consensus       187 ~~~~~L~~L~L~~-~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l~~~~---v~~  259 (512)
                      ..+++|++|+|++ +.+..-..  ..+  ..+++|+.|+|.++.  ++ ...+..+++|+.|+|.++.. ..+.   +..
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~~~--~~~--~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~  102 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHLEL--RDL--RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL-ESLSWKTVQG  102 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEECG--GGS--CSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC-SCCCSTTTCS
T ss_pred             CCCCCeeEEEccCCCCCCCcCh--hHh--ccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc-ceeCHHHccc
Confidence            4678999999985 77654211  111  478999999999885  22 23556789999999999753 2221   111


Q ss_pred             cCcceEEEeee
Q 043655          260 TKLERLRVASC  270 (512)
Q Consensus       260 ~~L~~L~l~~c  270 (512)
                      ..|+.|.+.+.
T Consensus       103 ~~L~~l~l~~N  113 (347)
T 2ifg_A          103 LSLQELVLSGN  113 (347)
T ss_dssp             CCCCEEECCSS
T ss_pred             CCceEEEeeCC
Confidence            23777776653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=84.81  E-value=0.69  Score=45.26  Aligned_cols=119  Identities=13%  Similarity=0.177  Sum_probs=62.1

Q ss_pred             ccCCccEEEEecccCccccCCCccccccCcccceEEeee-EEeeCccchhhhhcCCCCcccceeccc-ccccc-chhccc
Q 043655          161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSL-VILFNQPCLLDLFTDSSFPHLKKLDLD-ACYGL-KQLKVG  237 (512)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~~l~~l~~~~~~p~L~~L~L~-~~~~l-~~l~~~  237 (512)
                      .|..|+.+.+...  ...+...  ....+++|+.+.+.. +.-.++..|      .+|.+|+++.|- ++..+ ...+.+
T Consensus       263 ~c~~L~~i~lp~~--~~~I~~~--aF~~c~~L~~i~l~~~i~~I~~~aF------~~c~~L~~i~lp~~v~~I~~~aF~~  332 (394)
T 4gt6_A          263 SCAYLASVKMPDS--VVSIGTG--AFMNCPALQDIEFSSRITELPESVF------AGCISLKSIDIPEGITQILDDAFAG  332 (394)
T ss_dssp             TCSSCCEEECCTT--CCEECTT--TTTTCTTCCEEECCTTCCEECTTTT------TTCTTCCEEECCTTCCEECTTTTTT
T ss_pred             ecccccEEecccc--cceecCc--ccccccccccccCCCcccccCceee------cCCCCcCEEEeCCcccEehHhHhhC
Confidence            5788888887652  2233322  234678888887742 222222222      478899998884 34433 245668


Q ss_pred             ccccceeeeccc-cCccceeEe-ccCcceEEEeeeccccCCCceEEEeCCCcceEEee
Q 043655          238 CRALEDLTLDNC-IQLCGLDIF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWE  293 (512)
Q Consensus       238 cp~Le~L~l~~c-~~l~~~~v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~  293 (512)
                      |.+|+.+.|-.. ..+..-... +.+|+.+.+.+.......    ...+.+|+.+.+.
T Consensus       333 C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~----~~~~~~L~~i~i~  386 (394)
T 4gt6_A          333 CEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQWNA----ISTDSGLQNLPVA  386 (394)
T ss_dssp             CTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHHHT----CBCCCCC------
T ss_pred             CCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCceeehhh----hhccCCCCEEEeC
Confidence            888988888532 112221221 367888887664221110    1234567766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	512
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	4e-06
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	2e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.001
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	0.001

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 23 IDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCS 62
           D IS LP  +  ++L  L  K + Q     + WR L   
Sbjct: 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAED 55

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 24 DRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSFPDL 66
          D I+ LP  I   I   L  + I  +  +S+ W  +      L
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 27 SDLPDAILHHILFLLPIKSIAQTCTLSKRWRSL 59
            LPD +L  I   L +  + +   + KRW  L
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 24 DRISDLP----DAILHHILFLLPIKSIAQTCTLSKRWRSLWCS 62
          D I+ LP    D I  +IL  L  KS+     + K W  +   
Sbjct: 9  DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSD 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	512
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.17
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.08
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.66
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.66
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.57
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.56
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.48
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.41
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.25
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.21
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.21
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.19
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.12
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.05
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.96
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.88
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.87
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.86
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.69
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.32
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.31
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.09
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.08
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.03
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.35
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.28
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.07
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.95
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.33
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	94.32
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	93.82
d2ifga3	156	High affinity nerve growth factor receptor, N-term	93.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	90.93
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	90.63

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.3e-12  Score=122.47  Aligned_cols=197  Identities=18%  Similarity=0.230  Sum_probs=110.4

Q ss_pred             eccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccc-----cchh
Q 043655          160 ITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYG-----LKQL  234 (512)
Q Consensus       160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~-----l~~l  234 (512)
                      +...+|++|+|++|.  +...........+++|++|+|+++.+.+ ..+..+   ..+|+|++|+|.+|..     +..+
T Consensus        43 ~~~~~L~~LdLs~~~--i~~~~l~~l~~~c~~L~~L~L~~~~l~~-~~~~~l---~~~~~L~~L~Ls~c~~itd~~l~~l  116 (284)
T d2astb2          43 FSPFRVQHMDLSNSV--IEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTL---AKNSNLVRLNLSGCSGFSEFALQTL  116 (284)
T ss_dssp             CCCBCCCEEECTTCE--ECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHH---TTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred             ccCCCCCEEECCCCc--cCHHHHHHHHHhCCCcccccccccCCCc-HHHHHH---hcCCCCcCccccccccccccccchh
Confidence            345678888888732  2111111124568888888888886543 233333   3578888888888763     3455


Q ss_pred             cccccccceeeeccccCccceeEe------ccCcceEEEeeeccc-cC-CCceEEEeCCCcceEEeeccccCCCccccCc
Q 043655          235 KVGCRALEDLTLDNCIQLCGLDIF------GTKLERLRVASCFDA-YC-DKSWVKIDASKLKVLNWEYNAITASSSLENL  306 (512)
Q Consensus       235 ~~~cp~Le~L~l~~c~~l~~~~v~------~~~L~~L~l~~c~~~-~~-~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~  306 (512)
                      ..+||+|++|+|.+|..+.+..+.      .++|++|.+.+|... .+ +...+.-.+|+|++|+++++           
T Consensus       117 ~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~-----------  185 (284)
T d2astb2         117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS-----------  185 (284)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC-----------
T ss_pred             hHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccc-----------
Confidence            667888888888888765432211      256677766665321 10 01111123455555554443           


Q ss_pred             ccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHH
Q 043655          307 ASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGL  386 (512)
Q Consensus       307 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l  386 (512)
                                 ...++..       ...+..+++|++|+++.+.  .+.+.. +.....+++|+.|++..+   ....++
T Consensus       186 -----------~~itd~~-------~~~l~~~~~L~~L~L~~C~--~i~~~~-l~~L~~~~~L~~L~l~~~---~~d~~l  241 (284)
T d2astb2         186 -----------VMLKNDC-------FQEFFQLNYLQHLSLSRCY--DIIPET-LLELGEIPTLKTLQVFGI---VPDGTL  241 (284)
T ss_dssp             -----------TTCCGGG-------GGGGGGCTTCCEEECTTCT--TCCGGG-GGGGGGCTTCCEEECTTS---SCTTCH
T ss_pred             -----------cCCCchh-------hhhhcccCcCCEEECCCCC--CCChHH-HHHHhcCCCCCEEeeeCC---CCHHHH
Confidence                       2222111       1224457778888887532  111111 123456789999988654   233467


Q ss_pred             HHHHhhCCCCc
Q 043655          387 ACLFRSSPSIH  397 (512)
Q Consensus       387 ~~~L~~cp~Le  397 (512)
                      ..+.+.||+|+
T Consensus       242 ~~l~~~lp~L~  252 (284)
T d2astb2         242 QLLKEALPHLQ  252 (284)
T ss_dssp             HHHHHHSTTSE
T ss_pred             HHHHHhCcccc
Confidence            77888999986

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2e-12  Score=121.21  Aligned_cols=172  Identities=18%  Similarity=0.174  Sum_probs=103.7

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      .++++|++..+......++.-+..|++|++|+|.+|.  +.... ......+++|++|+|++|.-.++.++..+..  +|
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~--l~~~~-~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~--~~  120 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR--LSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLS--SC  120 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB--CCHHH-HHHHTTCTTCSEEECTTCBSCCHHHHHHHHH--HC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC--CCcHH-HHHHhcCCCCcCccccccccccccccchhhH--HH
Confidence            4677777653221111122223368999999999852  21110 0113468999999999987666666666653  79


Q ss_pred             cccceecccccccc-----ch-hcccccccceeeecccc-CccceeE-----eccCcceEEEeeeccccCC-CceEEEeC
Q 043655          218 PHLKKLDLDACYGL-----KQ-LKVGCRALEDLTLDNCI-QLCGLDI-----FGTKLERLRVASCFDAYCD-KSWVKIDA  284 (512)
Q Consensus       218 p~L~~L~L~~~~~l-----~~-l~~~cp~Le~L~l~~c~-~l~~~~v-----~~~~L~~L~l~~c~~~~~~-~~~~~i~~  284 (512)
                      |+|++|++.+|..+     .. +...|+.|+.|.+.+|. .+.+..+     ..|+|++|.+.+|....+. ...+ ..+
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l-~~~  199 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQL  199 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGC
T ss_pred             HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh-ccc
Confidence            99999999998643     22 33457999999999984 3443322     2389999999998654322 1111 145


Q ss_pred             CCcceEEeeccc-cCCC--ccccCcccceeeEEe
Q 043655          285 SKLKVLNWEYNA-ITAS--SSLENLASLHEASVG  315 (512)
Q Consensus       285 p~L~~L~~~~~~-~~~~--~~l~~~~~L~~l~l~  315 (512)
                      |+|++|.++++. +++.  ..++++|+|+.+++.
T Consensus       200 ~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~  233 (284)
T d2astb2         200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  233 (284)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             CcCCEEECCCCCCCChHHHHHHhcCCCCCEEeee
Confidence            677777766542 2211  233445555555443

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7.7e-11  Score=74.04  Aligned_cols=34  Identities=29%  Similarity=0.511  Sum_probs=32.3

Q ss_pred             cCCCChHHHHHHHccCCchhhHHHhhhcHhHHHh
Q 043655           26 ISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSL   59 (512)
Q Consensus        26 is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~l   59 (512)
                      ++.||+||+.+||++||.+|+++++.|||+|+++
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l   34 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL   34 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999985

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.79  E-value=4.1e-09  Score=94.63  Aligned_cols=139  Identities=14%  Similarity=0.101  Sum_probs=73.1

Q ss_pred             cCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhccccc
Q 043655          162 SDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCR  239 (512)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp  239 (512)
                      +.+|+.|.+.+|  .++-.. +  ...+++|++|+|+++.+.+...+      ..+++|+.|++.++.  .+.. +..++
T Consensus        40 l~~L~~L~l~~~--~i~~l~-~--l~~l~~L~~L~ls~n~i~~~~~l------~~l~~l~~l~~~~n~~~~i~~-l~~l~  107 (227)
T d1h6ua2          40 LDGITTLSAFGT--GVTTIE-G--VQYLNNLIGLELKDNQITDLAPL------KNLTKITELELSGNPLKNVSA-IAGLQ  107 (227)
T ss_dssp             HHTCCEEECTTS--CCCCCT-T--GGGCTTCCEEECCSSCCCCCGGG------TTCCSCCEEECCSCCCSCCGG-GTTCT
T ss_pred             cCCcCEEECCCC--CCCcch-h--HhcCCCCcEeecCCceeeccccc------ccccccccccccccccccccc-ccccc
Confidence            566777777763  222111 1  24688888888887776654332      467888888887764  3333 34678


Q ss_pred             ccceeeeccccCccceeE-eccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEe
Q 043655          240 ALEDLTLDNCIQLCGLDI-FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVG  315 (512)
Q Consensus       240 ~Le~L~l~~c~~l~~~~v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~  315 (512)
                      .|+.|.+.+|.......+ ..+.++.+.+..+......   ....+++|+.|.+.++.......++++++|+.++++
T Consensus       108 ~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls  181 (227)
T d1h6ua2         108 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD  181 (227)
T ss_dssp             TCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             cccccccccccccccchhccccchhhhhchhhhhchhh---hhccccccccccccccccccchhhcccccceecccC
Confidence            888888877764322221 1245555555443221100   011345555555555443333334444444444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.72  E-value=2.5e-09  Score=96.10  Aligned_cols=184  Identities=20%  Similarity=0.181  Sum_probs=128.7

Q ss_pred             ccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccccccceeeeccccCcccee-Ee-ccCc
Q 043655          187 GGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLD-IF-GTKL  262 (512)
Q Consensus       187 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~-v~-~~~L  262 (512)
                      ..+.+|+.|++.++.+.+-.++      ..+|+|++|++.++.  ++.. +..++.|+.|.+.+|.. ..+. +. .++|
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l------~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~-~~i~~l~~l~~L  109 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGV------QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL-KNVSAIAGLQSI  109 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTG------GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC-SCCGGGTTCTTC
T ss_pred             HHcCCcCEEECCCCCCCcchhH------hcCCCCcEeecCCceeecccc-ccccccccccccccccc-cccccccccccc
Confidence            3588999999999987764343      369999999999885  3333 57899999999998853 2222 21 3789


Q ss_pred             ceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCccc
Q 043655          263 ERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHAR  342 (512)
Q Consensus       263 ~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~  342 (512)
                      +.+.+.+|......   .....+.++.+.+.+........+.++++|+++.+..+...+..          -+..+++|+
T Consensus       110 ~~l~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~----------~l~~l~~L~  176 (227)
T d1h6ua2         110 KTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT----------PLANLSKLT  176 (227)
T ss_dssp             CEEECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG----------GGTTCTTCC
T ss_pred             cccccccccccccc---hhccccchhhhhchhhhhchhhhhccccccccccccccccccch----------hhcccccce
Confidence            99998877543111   01245778888887766655556778899999988765433221          267889999


Q ss_pred             EeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655          343 SLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK  402 (512)
Q Consensus       343 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~  402 (512)
                      .|+++.+.+..+.      ....+++|++|+|+.+. -.+..    -++.+++|+.|+|.
T Consensus       177 ~L~Ls~n~l~~l~------~l~~l~~L~~L~Ls~N~-lt~i~----~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         177 TLKADDNKISDIS------PLASLPNLIEVHLKNNQ-ISDVS----PLANTSNLFIVTLT  225 (227)
T ss_dssp             EEECCSSCCCCCG------GGGGCTTCCEEECTTSC-CCBCG----GGTTCTTCCEEEEE
T ss_pred             ecccCCCccCCCh------hhcCCCCCCEEECcCCc-CCCCc----ccccCCCCCEEEee
Confidence            9999887643322      34577899999997642 22222    27899999999986

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.66  E-value=1e-08  Score=89.87  Aligned_cols=77  Identities=16%  Similarity=0.121  Sum_probs=48.2

Q ss_pred             cCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhccccc
Q 043655          162 SDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCR  239 (512)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp  239 (512)
                      .+++++|.+.++  .++-..   ....+++|++|+|+++.+.+...+      ..+|+|++|++.++.  .+.. +.+++
T Consensus        39 l~~l~~L~l~~~--~i~~l~---~l~~l~nL~~L~Ls~N~l~~~~~l------~~l~~L~~L~l~~n~~~~~~~-l~~l~  106 (199)
T d2omxa2          39 LDQVTTLQADRL--GIKSID---GVEYLNNLTQINFSNNQLTDITPL------KNLTKLVDILMNNNQIADITP-LANLT  106 (199)
T ss_dssp             HTTCCEEECTTS--CCCCCT---TGGGCTTCCEEECCSSCCCCCGGG------TTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred             hcCCCEEECCCC--CCCCcc---ccccCCCcCcCccccccccCcccc------cCCcccccccccccccccccc-ccccc
Confidence            577888888873  222111   124578888888888877654333      357777777777665  2222 34667


Q ss_pred             ccceeeecccc
Q 043655          240 ALEDLTLDNCI  250 (512)
Q Consensus       240 ~Le~L~l~~c~  250 (512)
                      .|+.|.+.+|.
T Consensus       107 ~L~~L~l~~~~  117 (199)
T d2omxa2         107 NLTGLTLFNNQ  117 (199)
T ss_dssp             TCSEEECCSSC
T ss_pred             ccccccccccc
Confidence            77777776664

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=5.5e-09  Score=80.85  Aligned_cols=37  Identities=32%  Similarity=0.433  Sum_probs=35.6

Q ss_pred             CCccCCCChHHHHHHHccCCchhhHHHhhhcHhHHHh
Q 043655           23 IDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSL   59 (512)
Q Consensus        23 ~D~is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~l   59 (512)
                      .|.|+.||+||+.+||++||++|+++++.|||+|+.+
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999974

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=3.3e-09  Score=81.64  Aligned_cols=38  Identities=26%  Similarity=0.417  Sum_probs=35.7

Q ss_pred             CCccCCCChHHHHHHHccCCchhhHHHhhhcHhHHHhh
Q 043655           23 IDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLW   60 (512)
Q Consensus        23 ~D~is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~lw   60 (512)
                      .|.|+.||+||+.+||++|+++|+++++.|||+|+++.
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~   40 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII   40 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999999999999999999999753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.58  E-value=2.8e-08  Score=87.82  Aligned_cols=77  Identities=17%  Similarity=0.083  Sum_probs=48.2

Q ss_pred             cCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhccccc
Q 043655          162 SDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCR  239 (512)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp  239 (512)
                      ..+|+.|.+.++  .++-..   ....+++|++|+|+++.+.+-..+      ..+++|+.|++.++.  .+.. +..++
T Consensus        45 L~~L~~L~l~~~--~i~~l~---~l~~l~~L~~L~L~~n~i~~l~~~------~~l~~L~~L~l~~n~i~~l~~-l~~l~  112 (210)
T d1h6ta2          45 LNSIDQIIANNS--DIKSVQ---GIQYLPNVTKLFLNGNKLTDIKPL------ANLKNLGWLFLDENKVKDLSS-LKDLK  112 (210)
T ss_dssp             HHTCCEEECTTS--CCCCCT---TGGGCTTCCEEECCSSCCCCCGGG------TTCTTCCEEECCSSCCCCGGG-GTTCT
T ss_pred             hcCccEEECcCC--CCCCch---hHhhCCCCCEEeCCCccccCcccc------ccCcccccccccccccccccc-ccccc
Confidence            567888888874  222211   124688888888888877653322      357778888877664  3332 34567


Q ss_pred             ccceeeecccc
Q 043655          240 ALEDLTLDNCI  250 (512)
Q Consensus       240 ~Le~L~l~~c~  250 (512)
                      +|+.|.+.+|.
T Consensus       113 ~L~~L~l~~~~  123 (210)
T d1h6ta2         113 KLKSLSLEHNG  123 (210)
T ss_dssp             TCCEEECTTSC
T ss_pred             ccccccccccc
Confidence            77777776664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.57  E-value=6.1e-08  Score=84.80  Aligned_cols=99  Identities=12%  Similarity=0.042  Sum_probs=58.9

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF  217 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  217 (512)
                      .++++|.+....  ...++ .+..+++|++|+|++|  .++..+   ...++++|++|.++++.+..-..+      .++
T Consensus        40 ~~l~~L~l~~~~--i~~l~-~l~~l~nL~~L~Ls~N--~l~~~~---~l~~l~~L~~L~l~~n~~~~~~~l------~~l  105 (199)
T d2omxa2          40 DQVTTLQADRLG--IKSID-GVEYLNNLTQINFSNN--QLTDIT---PLKNLTKLVDILMNNNQIADITPL------ANL  105 (199)
T ss_dssp             TTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSS--CCCCCG---GGTTCTTCCEEECCSSCCCCCGGG------TTC
T ss_pred             cCCCEEECCCCC--CCCcc-ccccCCCcCcCccccc--cccCcc---cccCCccccccccccccccccccc------ccc
Confidence            466666654322  12232 2345788888888874  222211   134678888888887766553333      367


Q ss_pred             cccceeccccccccc-hhcccccccceeeecccc
Q 043655          218 PHLKKLDLDACYGLK-QLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       218 p~L~~L~L~~~~~l~-~l~~~cp~Le~L~l~~c~  250 (512)
                      ++|+.|++.++.... .-+..+++|+.|++.++.
T Consensus       106 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~  139 (199)
T d2omxa2         106 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT  139 (199)
T ss_dssp             TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred             cccccccccccccccccccchhhhhHHhhhhhhh
Confidence            888888887775211 223456777777777764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.56  E-value=7.9e-08  Score=84.85  Aligned_cols=97  Identities=16%  Similarity=0.151  Sum_probs=61.1

Q ss_pred             CCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCc
Q 043655          139 NVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFP  218 (512)
Q Consensus       139 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p  218 (512)
                      .+++|.+....  ...++ .+..+++|++|+|++|... .+++    ...+++|+.|+++++.+.+-..+      ..+|
T Consensus        47 ~L~~L~l~~~~--i~~l~-~l~~l~~L~~L~L~~n~i~-~l~~----~~~l~~L~~L~l~~n~i~~l~~l------~~l~  112 (210)
T d1h6ta2          47 SIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLT-DIKP----LANLKNLGWLFLDENKVKDLSSL------KDLK  112 (210)
T ss_dssp             TCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCC-CCGG----GTTCTTCCEEECCSSCCCCGGGG------TTCT
T ss_pred             CccEEECcCCC--CCCch-hHhhCCCCCEEeCCCcccc-Cccc----cccCccccccccccccccccccc------cccc
Confidence            56666654322  12233 2456888999999885221 1221    24688999999988887653332      4688


Q ss_pred             ccceecccccc--ccchhcccccccceeeecccc
Q 043655          219 HLKKLDLDACY--GLKQLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       219 ~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~  250 (512)
                      +|+.|++.++.  .+.. +..++.|+.+.+.++.
T Consensus       113 ~L~~L~l~~~~~~~~~~-l~~l~~l~~l~~~~n~  145 (210)
T d1h6ta2         113 KLKSLSLEHNGISDING-LVHLPQLESLYLGNNK  145 (210)
T ss_dssp             TCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred             ccccccccccccccccc-cccccccccccccccc
Confidence            99999998876  3332 3466777777776664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=7.2e-08  Score=88.54  Aligned_cols=204  Identities=17%  Similarity=0.091  Sum_probs=117.5

Q ss_pred             eEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccce
Q 043655          143 LDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKK  222 (512)
Q Consensus       143 L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~  222 (512)
                      ++++....+...+|..+.  ++|++|+|++|... .+++..  ...+++|++|+|+++.+..-+.+      ..+|+|++
T Consensus        13 ~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~--f~~l~~L~~L~L~~N~l~~l~~~------~~l~~L~~   81 (266)
T d1p9ag_          13 LEVNCDKRNLTALPPDLP--KDTTILHLSENLLY-TFSLAT--LMPYTRLTQLNLDRAELTKLQVD------GTLPVLGT   81 (266)
T ss_dssp             CEEECTTSCCSSCCSCCC--TTCCEEECTTSCCS-EEEGGG--GTTCTTCCEEECTTSCCCEEECC------SCCTTCCE
T ss_pred             eEEEccCCCCCeeCcCcC--cCCCEEECcCCcCC-CcCHHH--hhccccccccccccccccccccc------cccccccc
Confidence            455555555566776553  57889999885321 233322  34688899999988776542221      36788888


Q ss_pred             ecccccc--ccchhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC
Q 043655          223 LDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS  300 (512)
Q Consensus       223 L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~  300 (512)
                      |+|.++.  .....+...+.|+.|++.++..........                      ...++++.|.+.++.+...
T Consensus        82 L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----------------------~~l~~l~~L~l~~n~l~~l  139 (266)
T d1p9ag_          82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL----------------------RGLGELQELYLKGNELKTL  139 (266)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTT----------------------TTCTTCCEEECTTSCCCCC
T ss_pred             cccccccccccccccccccccccccccccccceeecccc----------------------cccccccccccccccccee
Confidence            8888775  344455667788888877765321110000                      0123444444444332211


Q ss_pred             --ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeec
Q 043655          301 --SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGF  378 (512)
Q Consensus       301 --~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  378 (512)
                        ..+..++.|+.++++........        ...+..+++|+.|+|+.+.++.+..     ....+++|+.|.|....
T Consensus       140 ~~~~~~~l~~l~~l~l~~N~l~~~~--------~~~~~~l~~L~~L~Ls~N~L~~lp~-----~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         140 PPGLLTPTPKLEKLSLANNNLTELP--------AGLLNGLENLDTLLLQENSLYTIPK-----GFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSCCC--------TTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCCCSEEECCSCC
T ss_pred             ccccccccccchhcccccccccccC--------ccccccccccceeecccCCCcccCh-----hHCCCCCCCEEEecCCC
Confidence              22345566666666544321110        1236678889999998887654432     33357789999998654


Q ss_pred             cC--CcHHHHHHHHhh
Q 043655          379 NK--HNVQGLACLFRS  392 (512)
Q Consensus       379 ~~--~~~~~l~~~L~~  392 (512)
                      -.  +...++..+++.
T Consensus       207 ~~CdC~~~~l~~wl~~  222 (266)
T d1p9ag_         207 WLCNCEILYFRRWLQD  222 (266)
T ss_dssp             BCCSGGGHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHh
Confidence            33  345667777763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.41  E-value=3.4e-07  Score=88.39  Aligned_cols=97  Identities=20%  Similarity=0.188  Sum_probs=51.7

Q ss_pred             CCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccc
Q 043655          285 SKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLH  364 (512)
Q Consensus       285 p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~  364 (512)
                      +.++.+...++.+.....+..++.++.++++.....+-.          -+..+++|+.|+++.+.++.+.      .+.
T Consensus       285 ~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~----------~l~~l~~L~~L~L~~n~l~~l~------~l~  348 (384)
T d2omza2         285 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS----------PVSSLTKLQRLFFANNKVSDVS------SLA  348 (384)
T ss_dssp             TTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG----------GGGGCTTCCEEECCSSCCCCCG------GGG
T ss_pred             cccccccccccccccccccchhcccCeEECCCCCCCCCc----------ccccCCCCCEEECCCCCCCCCh------hHc
Confidence            445555555444433334555666666666544322110          1456677777777766543321      233


Q ss_pred             cccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655          365 TFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK  402 (512)
Q Consensus       365 ~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~  402 (512)
                      .+++|++|+|+.+. -.+.   .. ++++|+|+.|+|.
T Consensus       349 ~l~~L~~L~l~~N~-l~~l---~~-l~~l~~L~~L~L~  381 (384)
T d2omza2         349 NLTNINWLSAGHNQ-ISDL---TP-LANLTRITQLGLN  381 (384)
T ss_dssp             GCTTCCEEECCSSC-CCBC---GG-GTTCTTCSEEECC
T ss_pred             CCCCCCEEECCCCc-CCCC---hh-hccCCCCCEeeCC
Confidence            56777777776431 1121   11 5677888888764

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.1e-07  Score=75.24  Aligned_cols=38  Identities=34%  Similarity=0.485  Sum_probs=35.0

Q ss_pred             CCCccCCCC----hHHHHHHHccCCchhhHHHhhhcHhHHHh
Q 043655           22 GIDRISDLP----DAILHHILFLLPIKSIAQTCTLSKRWRSL   59 (512)
Q Consensus        22 ~~D~is~LP----devl~~Ils~L~~~d~~rts~lSrrWr~l   59 (512)
                      ..|.|+.||    |||+.+|||||+.+|+++++.|||+|+.+
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            358899999    59999999999999999999999999864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.2e-06  Score=80.93  Aligned_cols=165  Identities=18%  Similarity=0.091  Sum_probs=85.9

Q ss_pred             eeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccc
Q 043655          142 ELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLK  221 (512)
Q Consensus       142 ~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~  221 (512)
                      ++.+.....+...+|..+.  +++++|+|++|.. -.+++..  ..++++|++|+++++.+......  .  ...++.++
T Consensus        13 ~~~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i-~~i~~~~--f~~l~~L~~L~ls~n~l~~i~~~--~--~~~~~~~~   83 (284)
T d1ozna_          13 KVTTSCPQQGLQAVPVGIP--AASQRIFLHGNRI-SHVPAAS--FRACRNLTILWLHSNVLARIDAA--A--FTGLALLE   83 (284)
T ss_dssp             SCEEECCSSCCSSCCTTCC--TTCSEEECTTSCC-CEECTTT--TTTCTTCCEEECCSSCCCEECTT--T--TTTCTTCC
T ss_pred             CeEEEcCCCCCCccCCCCC--CCCCEEECcCCcC-CCCCHHH--hhccccccccccccccccccccc--c--cccccccc
Confidence            3445444444556666553  5688999998532 2444432  35688999999987766542111  1  13567777


Q ss_pred             eeccccccccc----hhcccccccceeeeccccCcc--ceeE-eccCcceEEEeeeccccCCCceEEEeCCCcceEEeec
Q 043655          222 KLDLDACYGLK----QLKVGCRALEDLTLDNCIQLC--GLDI-FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEY  294 (512)
Q Consensus       222 ~L~L~~~~~l~----~l~~~cp~Le~L~l~~c~~l~--~~~v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~  294 (512)
                      .+.......+.    ..+.++++|++|++.++....  .... ..++|+.+.+.+.......... .-..++|+.|.+.+
T Consensus        84 ~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~-f~~~~~L~~L~l~~  162 (284)
T d1ozna_          84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT-FRDLGNLTHLFLHG  162 (284)
T ss_dssp             EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCS
T ss_pred             ccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhH-hccccchhhccccc
Confidence            77665544332    234567888888888875311  1111 1245666666554221110000 01234566666555


Q ss_pred             cccCCC--ccccCcccceeeEEee
Q 043655          295 NAITAS--SSLENLASLHEASVGF  316 (512)
Q Consensus       295 ~~~~~~--~~l~~~~~L~~l~l~~  316 (512)
                      +.+...  ..+.++++|+.+.+..
T Consensus       163 N~l~~l~~~~f~~l~~L~~l~l~~  186 (284)
T d1ozna_         163 NRISSVPERAFRGLHSLDRLLLHQ  186 (284)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCS
T ss_pred             Ccccccchhhhccccccchhhhhh
Confidence            443211  2234455555555543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.21  E-value=3.3e-07  Score=85.72  Aligned_cols=230  Identities=16%  Similarity=0.099  Sum_probs=108.6

Q ss_pred             EeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecc
Q 043655          146 EVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDL  225 (512)
Q Consensus       146 ~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L  225 (512)
                      +........+|..+.  +++++|+|++|.. -.+++..  ..++++|++|+++++.+..-..  ..+  .++++|++|++
T Consensus        16 ~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i-~~l~~~~--f~~l~~L~~L~l~~n~~~~i~~--~~f--~~l~~L~~L~l   86 (305)
T d1xkua_          16 QCSDLGLEKVPKDLP--PDTALLDLQNNKI-TEIKDGD--FKNLKNLHTLILINNKISKISP--GAF--APLVKLERLYL   86 (305)
T ss_dssp             ECTTSCCCSCCCSCC--TTCCEEECCSSCC-CCBCTTT--TTTCTTCCEEECCSSCCCCBCT--TTT--TTCTTCCEEEC
T ss_pred             EecCCCCCccCCCCC--CCCCEEECcCCcC-CCcChhH--hhccccccccccccccccccch--hhh--hCCCccCEecc
Confidence            333334456666553  5688888887421 2343322  2467788888888777665211  111  36788888888


Q ss_pred             ccccccchhc-ccccccceeeeccccCccceeE----eccCcceEEEeeeccccCC-CceEEEeCCCcceEEeeccccCC
Q 043655          226 DACYGLKQLK-VGCRALEDLTLDNCIQLCGLDI----FGTKLERLRVASCFDAYCD-KSWVKIDASKLKVLNWEYNAITA  299 (512)
Q Consensus       226 ~~~~~l~~l~-~~cp~Le~L~l~~c~~l~~~~v----~~~~L~~L~l~~c~~~~~~-~~~~~i~~p~L~~L~~~~~~~~~  299 (512)
                      .++. +..+- ...+.|+.|.+..+.. ..+..    ....+..+.+..+...... ........++|+.+.+.++.+..
T Consensus        87 ~~n~-l~~l~~~~~~~l~~L~~~~n~l-~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_          87 SKNQ-LKELPEKMPKTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             CSSC-CSBCCSSCCTTCCEEECCSSCC-CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             cCCc-cCcCccchhhhhhhhhccccch-hhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence            7764 22221 2235566666655432 11110    0123333333222111000 00001123556666666554322


Q ss_pred             CccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeecc
Q 043655          300 SSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFN  379 (512)
Q Consensus       300 ~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  379 (512)
                       ......++|+++++.........        ...+..++.++.|.++...+..+..    .....+++|+.|+|+.+.-
T Consensus       165 -l~~~~~~~L~~L~l~~n~~~~~~--------~~~~~~~~~l~~L~~s~n~l~~~~~----~~~~~l~~L~~L~L~~N~L  231 (305)
T d1xkua_         165 -IPQGLPPSLTELHLDGNKITKVD--------AASLKGLNNLAKLGLSFNSISAVDN----GSLANTPHLRELHLNNNKL  231 (305)
T ss_dssp             -CCSSCCTTCSEEECTTSCCCEEC--------TGGGTTCTTCCEEECCSSCCCEECT----TTGGGSTTCCEEECCSSCC
T ss_pred             -cCcccCCccCEEECCCCcCCCCC--------hhHhhcccccccccccccccccccc----ccccccccceeeecccccc
Confidence             12233556666665433221110        1234556666666666554333221    1334556677776654311


Q ss_pred             CCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          380 KHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       380 ~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                          ..++.-+..+|+|+.|++..
T Consensus       232 ----~~lp~~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         232 ----VKVPGGLADHKYIQVVYLHN  251 (305)
T ss_dssp             ----SSCCTTTTTCSSCCEEECCS
T ss_pred             ----cccccccccccCCCEEECCC
Confidence                11222345667777776653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.19  E-value=6.7e-07  Score=86.18  Aligned_cols=98  Identities=23%  Similarity=0.195  Sum_probs=44.0

Q ss_pred             CCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccc
Q 043655          284 ASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNL  363 (512)
Q Consensus       284 ~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~  363 (512)
                      .++|++|.+++..+.....+.+++.++.+.+..+....-          ..+..+++++.|+++...+..+.      ..
T Consensus       262 ~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~----------~~~~~~~~l~~L~ls~n~l~~l~------~l  325 (384)
T d2omza2         262 LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI----------SPISNLKNLTYLTLYFNNISDIS------PV  325 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC----------GGGGGCTTCSEEECCSSCCSCCG------GG
T ss_pred             cccCCEeeccCcccCCCCccccccccccccccccccccc----------cccchhcccCeEECCCCCCCCCc------cc
Confidence            355555555554443333344555555544443322110          11444555666666554432211      22


Q ss_pred             ccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655          364 HTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK  402 (512)
Q Consensus       364 ~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~  402 (512)
                      ..+++|++|.|..+. -.+.   . -+..||+|++|++.
T Consensus       326 ~~l~~L~~L~L~~n~-l~~l---~-~l~~l~~L~~L~l~  359 (384)
T d2omza2         326 SSLTKLQRLFFANNK-VSDV---S-SLANLTNINWLSAG  359 (384)
T ss_dssp             GGCTTCCEEECCSSC-CCCC---G-GGGGCTTCCEEECC
T ss_pred             ccCCCCCEEECCCCC-CCCC---h-hHcCCCCCCEEECC
Confidence            345566666665431 1111   1 13456666666664

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.12  E-value=1.4e-06  Score=81.66  Aligned_cols=106  Identities=18%  Similarity=0.181  Sum_probs=72.4

Q ss_pred             CCceeEEEecc-CCCCCCCcceeccCCccEEEEecc-cCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          139 NVEELDIEVAT-DDYFNLPRCVITSDSLRVFKLRSR-YRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       139 ~v~~L~l~~~~-~~~~~lp~~l~~~~~L~~L~L~~~-~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      +|.+|++.... .+...+|..+..+++|++|+|+++ .....+|+.   ...+++|++|+|+++.+.+...  ..+  ..
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~---i~~L~~L~~L~Ls~N~l~~~~~--~~~--~~  123 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA---IAKLTQLHYLYITHTNVSGAIP--DFL--SQ  123 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG---GGGCTTCSEEEEEEECCEEECC--GGG--GG
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc---cccccccchhhhcccccccccc--ccc--cc
Confidence            35666665432 233468899999999999999862 222245532   3578999999999998876321  111  35


Q ss_pred             Ccccceecccccc---ccchhcccccccceeeeccccC
Q 043655          217 FPHLKKLDLDACY---GLKQLKVGCRALEDLTLDNCIQ  251 (512)
Q Consensus       217 ~p~L~~L~L~~~~---~l~~l~~~cp~Le~L~l~~c~~  251 (512)
                      +++|+.+++..+.   .+..-+..++.|+.+++.++..
T Consensus       124 ~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l  161 (313)
T d1ogqa_         124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred             hhhhcccccccccccccCchhhccCcccceeecccccc
Confidence            7889999998775   2334466788899999888753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.05  E-value=3e-07  Score=87.64  Aligned_cols=134  Identities=13%  Similarity=0.025  Sum_probs=78.4

Q ss_pred             hHHHHHhhcCCcccEeeecchhhhhhcccc-cccccccccccceEEEEeecc-CCcHHHHHHHHhhCCCCcEEEEEeecc
Q 043655          329 QSVSNFLSGLSHARSLTLESPCIEILSNRN-YFTNLHTFTNLKSLELHTGFN-KHNVQGLACLFRSSPSIHTLILKIIND  406 (512)
Q Consensus       329 ~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~-~~~~~~l~~~L~~cp~Le~L~l~~~~~  406 (512)
                      ..+...++.++.++.|.+..+.+....... .......+++|++|+|..+.- ......+...++.||+|++|.|....-
T Consensus       176 ~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         176 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             ccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence            345667778888999998776542211111 113456788999999875421 122345677889999999998853210


Q ss_pred             cchhhhcccccccCccCccchhhhhccccCchhhhcCccEEEEeeec-cchhHHHHHHHHHhcCccccceEEEec
Q 043655          407 YKIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFL-ECENEVSLAKFLLKHGKALQEMTLCTG  480 (512)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i~~~~-g~~~e~~l~~~ll~~a~~L~~m~i~~~  480 (512)
                      ...+               .....+. .  ..+....|+++.+.+-. +.+....+++.+-.+.+.|+.+.+...
T Consensus       256 ~~~g---------------~~~l~~~-l--~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         256 SARG---------------AAAVVDA-F--SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             CHHH---------------HHHHHHH-H--HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             Cchh---------------hHHHHHH-h--hhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            0000               0011110 0  01113578898887543 233445677777678889999987653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=3e-06  Score=70.96  Aligned_cols=65  Identities=14%  Similarity=0.127  Sum_probs=38.7

Q ss_pred             hhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655          335 LSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK  402 (512)
Q Consensus       335 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~  402 (512)
                      +..+++++.|++..+.+..+...   .....+++|++|++..+.-......-..++..+|+|+.|+-.
T Consensus        83 ~~~l~~L~~L~L~~N~i~~~~~l---~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          83 DQALPDLTELILTNNSLVELGDL---DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGG---GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cccccccccceeccccccccccc---cccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            34566677777776654433221   134467888888887643221112234568889999988643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.96  E-value=6.7e-06  Score=76.48  Aligned_cols=238  Identities=17%  Similarity=0.119  Sum_probs=135.2

Q ss_pred             cCCceeEEEeccCCCCCCCcc-eeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRC-VITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      ++++.|++..  .....+|.. +..+++|++|+++++... .+++.  ....+++|++|+|.++.+..-..       ..
T Consensus        31 ~~l~~L~Ls~--N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~--~f~~l~~L~~L~l~~n~l~~l~~-------~~   98 (305)
T d1xkua_          31 PDTALLDLQN--NKITEIKDGDFKNLKNLHTLILINNKIS-KISPG--AFAPLVKLERLYLSKNQLKELPE-------KM   98 (305)
T ss_dssp             TTCCEEECCS--SCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTT--TTTTCTTCCEEECCSSCCSBCCS-------SC
T ss_pred             CCCCEEECcC--CcCCCcChhHhhcccccccccccccccc-ccchh--hhhCCCccCEecccCCccCcCcc-------ch
Confidence            3566666543  233456654 446789999999885322 33332  23468888999998877654211       24


Q ss_pred             Ccccceecccccc--ccc-hhcccccccceeeeccccCcc-cee---E-eccCcceEEEeeeccccCCCceEEEeCCCcc
Q 043655          217 FPHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNCIQLC-GLD---I-FGTKLERLRVASCFDAYCDKSWVKIDASKLK  288 (512)
Q Consensus       217 ~p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~~l~-~~~---v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~  288 (512)
                      ++.|+.|.+..+.  .+. .....++.+..+....+.... ...   . ..++|+.+.+.++...... ..   ..++|+
T Consensus        99 ~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~-~~---~~~~L~  174 (305)
T d1xkua_          99 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-QG---LPPSLT  174 (305)
T ss_dssp             CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-SS---CCTTCS
T ss_pred             hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC-cc---cCCccC
Confidence            5677888776654  222 123345556666555543211 110   1 1256777777665432111 11   246788


Q ss_pred             eEEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccc
Q 043655          289 VLNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTF  366 (512)
Q Consensus       289 ~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~  366 (512)
                      .|.+.++.....  ..+.+++.++.+.++.+...+..        ...+.++++|+.|+++++.+..+.     .....+
T Consensus       175 ~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~--------~~~~~~l~~L~~L~L~~N~L~~lp-----~~l~~l  241 (305)
T d1xkua_         175 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD--------NGSLANTPHLRELHLNNNKLVKVP-----GGLADH  241 (305)
T ss_dssp             EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC--------TTTGGGSTTCCEEECCSSCCSSCC-----TTTTTC
T ss_pred             EEECCCCcCCCCChhHhhccccccccccccccccccc--------cccccccccceeeecccccccccc-----cccccc
Confidence            888877653221  34567778888877655432211        124667889999999887654432     244577


Q ss_pred             cccceEEEEeecc-CC--cHHHHHHHHhhCCCCcEEEEEee
Q 043655          367 TNLKSLELHTGFN-KH--NVQGLACLFRSSPSIHTLILKII  404 (512)
Q Consensus       367 ~~L~~L~L~~~~~-~~--~~~~l~~~L~~cp~Le~L~l~~~  404 (512)
                      ++|++|+|+.+.- .-  ........+...++|+.|.|...
T Consensus       242 ~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             cCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCC
Confidence            8999999876321 11  11111234456788999988753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=3.6e-06  Score=77.58  Aligned_cols=195  Identities=17%  Similarity=0.089  Sum_probs=127.0

Q ss_pred             CcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--c-cchhcccccccceeeeccccCccceeEe----ccC
Q 043655          189 FRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--G-LKQLKVGCRALEDLTLDNCIQLCGLDIF----GTK  261 (512)
Q Consensus       189 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~-l~~l~~~cp~Le~L~l~~c~~l~~~~v~----~~~  261 (512)
                      .+++++|+|+++.+..-+.  ..+  .++++|+.|++.++.  . .......++.++.+.+.....+..+.-.    .++
T Consensus        31 p~~~~~L~Ls~N~i~~i~~--~~f--~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~  106 (284)
T d1ozna_          31 PAASQRIFLHGNRISHVPA--ASF--RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR  106 (284)
T ss_dssp             CTTCSEEECTTSCCCEECT--TTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred             CCCCCEEECcCCcCCCCCH--HHh--hccccccccccccccccccccccccccccccccccccccccccccchhhccccc
Confidence            3578999999988764211  112  478999999998875  2 2234456788888877766555444322    278


Q ss_pred             cceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCC
Q 043655          262 LERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLS  339 (512)
Q Consensus       262 L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~  339 (512)
                      |+.|.+..+...... .......++|+.+.+.+..+...  ..+.++++|+++++.......-.        ...+.+++
T Consensus       107 L~~L~l~~n~~~~~~-~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~--------~~~f~~l~  177 (284)
T d1ozna_         107 LHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP--------ERAFRGLH  177 (284)
T ss_dssp             CCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC--------TTTTTTCT
T ss_pred             CCEEecCCccccccc-ccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc--------hhhhcccc
Confidence            999998886432111 11111356899999998776543  34667889999988765432210        13467889


Q ss_pred             cccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          340 HARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       340 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      +++.+.+....+..+..    .....+++|++|++....-. .  .....+..+++|++|.+..
T Consensus       178 ~L~~l~l~~N~l~~i~~----~~f~~l~~L~~L~l~~N~i~-~--~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVHP----HAFRDLGRLMTLYLFANNLS-A--LPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             TCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCS-C--CCHHHHTTCTTCCEEECCS
T ss_pred             ccchhhhhhccccccCh----hHhhhhhhcccccccccccc-c--ccccccccccccCEEEecC
Confidence            99999998776443321    24557789999999764222 1  2235678999999999864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.88  E-value=4.3e-06  Score=78.17  Aligned_cols=104  Identities=17%  Similarity=0.186  Sum_probs=69.1

Q ss_pred             cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCc--cchhhhhcCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQ--PCLLDLFTDS  215 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~l~~l~~~~  215 (512)
                      ..++.|++..+..-.-.+|..+..+++|++|+|++|... ..++.  ....+++|+.+.+..+.+...  ..+      .
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~-~~~~~--~~~~~~~L~~l~l~~N~~~~~~p~~l------~  146 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPD--FLSQIKTLVTLDFSYNALSGTLPPSI------S  146 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECCG--GGGGCTTCCEEECCSSEEESCCCGGG------G
T ss_pred             ccccccccccccccccccccccccccccchhhhcccccc-ccccc--cccchhhhcccccccccccccCchhh------c
Confidence            578888887433222368998889999999999995322 22222  234688999999998887653  223      3


Q ss_pred             CCcccceecccccc---ccchhccccccc-ceeeecccc
Q 043655          216 SFPHLKKLDLDACY---GLKQLKVGCRAL-EDLTLDNCI  250 (512)
Q Consensus       216 ~~p~L~~L~L~~~~---~l~~l~~~cp~L-e~L~l~~c~  250 (512)
                      .+++|+.+++.++.   .+.......+.+ +.+.+..+.
T Consensus       147 ~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             cCcccceeecccccccccccccccccccccccccccccc
Confidence            68999999999876   232333344444 666666553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.87  E-value=3e-07  Score=87.66  Aligned_cols=116  Identities=15%  Similarity=0.101  Sum_probs=69.4

Q ss_pred             CCCcceEEeeccccCCC-------ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcc
Q 043655          284 ASKLKVLNWEYNAITAS-------SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSN  356 (512)
Q Consensus       284 ~p~L~~L~~~~~~~~~~-------~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~  356 (512)
                      .+.|+.|.+.++.+...       ..+..+++|+.++++.+...+    .....+...+..+++|+.|.++.+.+.....
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~----~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~  260 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH----LGSSALAIALKSWPNLRELGLNDCLLSARGA  260 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH----HHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccc----cccccccccccccccchhhhhhcCccCchhh
Confidence            45677777766544321       224567888888887543211    1234566788899999999998775422111


Q ss_pred             ccccccc--ccccccceEEEEeeccC-CcHHHHHHHHh-hCCCCcEEEEEe
Q 043655          357 RNYFTNL--HTFTNLKSLELHTGFNK-HNVQGLACLFR-SSPSIHTLILKI  403 (512)
Q Consensus       357 ~~~~~~~--~~~~~L~~L~L~~~~~~-~~~~~l~~~L~-~cp~Le~L~l~~  403 (512)
                      ......+  .....|++|+|+.+.-. .....+...++ ++|+|++|+|..
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             HHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCC
Confidence            1111111  23567999999864211 22344556564 799999998854

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.7e-07  Score=91.11  Aligned_cols=172  Identities=17%  Similarity=0.124  Sum_probs=84.3

Q ss_pred             CCCcceEEeeccccCCC------ccccCcccceeeEEeeEEcccchhHHHHhHHHHHh-hcCCcccEeeecchhhhhhcc
Q 043655          284 ASKLKVLNWEYNAITAS------SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFL-SGLSHARSLTLESPCIEILSN  356 (512)
Q Consensus       284 ~p~L~~L~~~~~~~~~~------~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l-~~l~~l~~L~l~~~~~~~~~~  356 (512)
                      .+.++.+.+.++.+...      ..+...+.+..++++.....+.    ....+...+ .....++.+.+....+.....
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~----~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~  329 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE----GARLLCETLLEPGCQLESLWVKSCSFTAACC  329 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH----HHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc----ccchhhccccccccccccccccccchhhhhh
Confidence            45677888776654221      1123456666666654432111    112222322 334567787777654322111


Q ss_pred             cccccccccccccceEEEEeeccCCcHHHH---HHHH-hhCCCCcEEEEEeecccchhhhcccccccCccCccchhhhhc
Q 043655          357 RNYFTNLHTFTNLKSLELHTGFNKHNVQGL---ACLF-RSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEEEQYWQS  432 (512)
Q Consensus       357 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l---~~~L-~~cp~Le~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  432 (512)
                      ..........++|++|+|+.+  .-+..++   ...+ +.++.|+.|.+....   .                .+.....
T Consensus       330 ~~l~~~~~~~~~L~~L~Ls~N--~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~---i----------------~~~~~~~  388 (460)
T d1z7xw1         330 SHFSSVLAQNRFLLELQISNN--RLEDAGVRELCQGLGQPGSVLRVLWLADCD---V----------------SDSSCSS  388 (460)
T ss_dssp             HHHHHHHHHCSSCCEEECCSS--BCHHHHHHHHHHHHTSTTCCCCEEECTTSC---C----------------CHHHHHH
T ss_pred             hhcccccccccchhhhheeee--cccCcccchhhhhhhcccCCCCEEECCCCC---C----------------ChHHHHH
Confidence            111112234557888888653  2222233   3323 356778888775321   0                0000000


Q ss_pred             cccCchhhhcCccEEEEeeec-cchhHHHHHHHHHhcCccccceEEEecc
Q 043655          433 QSQTLKPFLNNLNVVEIHGFL-ECENEVSLAKFLLKHGKALQEMTLCTGH  481 (512)
Q Consensus       433 ~~~~~~~~~~~L~~v~i~~~~-g~~~e~~l~~~ll~~a~~L~~m~i~~~~  481 (512)
                      -..... -..+|+++.+.+=. +.+....+++.+-.+...||.+.+....
T Consensus       389 l~~~l~-~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         389 LAATLL-ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             HHHHHH-HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             HHHHHh-cCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence            000000 13678877776432 2344566777777788888888887654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=2.7e-06  Score=71.18  Aligned_cols=80  Identities=15%  Similarity=0.141  Sum_probs=51.8

Q ss_pred             ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--cc-chhccc
Q 043655          161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GL-KQLKVG  237 (512)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l-~~l~~~  237 (512)
                      .+.+|+.|+|++|  .++..+.  ....+++|+.|+|+++.+..-+++      ..+|+|++|++.++.  .+ ..+...
T Consensus        16 n~~~lr~L~L~~n--~I~~i~~--~~~~l~~L~~L~Ls~N~i~~l~~~------~~l~~L~~L~ls~N~i~~l~~~~~~~   85 (162)
T d1a9na_          16 NAVRDRELDLRGY--KIPVIEN--LGATLDQFDAIDFSDNEIRKLDGF------PLLRRLKTLLVNNNRICRIGEGLDQA   85 (162)
T ss_dssp             CTTSCEEEECTTS--CCCSCCC--GGGGTTCCSEEECCSSCCCEECCC------CCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             CcCcCcEEECCCC--CCCccCc--cccccccCCEEECCCCCCCccCCc------ccCcchhhhhcccccccCCCcccccc
Confidence            5667888888874  2222221  234678888888888877643332      367888888888775  22 233456


Q ss_pred             ccccceeeecccc
Q 043655          238 CRALEDLTLDNCI  250 (512)
Q Consensus       238 cp~Le~L~l~~c~  250 (512)
                      +|.|+.|++.++.
T Consensus        86 l~~L~~L~L~~N~   98 (162)
T d1a9na_          86 LPDLTELILTNNS   98 (162)
T ss_dssp             CTTCCEEECCSCC
T ss_pred             ccccccceecccc
Confidence            7888888888775

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=4.6e-06  Score=75.99  Aligned_cols=170  Identities=21%  Similarity=0.187  Sum_probs=99.1

Q ss_pred             cccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccccccceeeeccccCccceeEeccCcceEEE
Q 043655          190 RSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRV  267 (512)
Q Consensus       190 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l  267 (512)
                      ++|++|+|+++.+..-..  ..+  .++++|++|+|.++.  .+.. ....++|+.|+|.++.. ....           
T Consensus        31 ~~l~~L~Ls~N~i~~l~~--~~f--~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l-~~~~-----------   93 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSL--ATL--MPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQL-QSLP-----------   93 (266)
T ss_dssp             TTCCEEECTTSCCSEEEG--GGG--TTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCC-SSCC-----------
T ss_pred             cCCCEEECcCCcCCCcCH--HHh--hcccccccccccccccccccc-ccccccccccccccccc-cccc-----------
Confidence            579999999887654210  111  357777777777764  2221 23456666666666542 1110           


Q ss_pred             eeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEee
Q 043655          268 ASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLT  345 (512)
Q Consensus       268 ~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~  345 (512)
                                 ......++|+.|.+++......  ..+..++++..+.+.......-.        ...+..+++++.|+
T Consensus        94 -----------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~--------~~~~~~l~~l~~l~  154 (266)
T d1p9ag_          94 -----------LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP--------PGLLTPTPKLEKLS  154 (266)
T ss_dssp             -----------CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC--------TTTTTTCTTCCEEE
T ss_pred             -----------cccccccccccccccccccceeeccccccccccccccccccccceec--------cccccccccchhcc
Confidence                       0111346677777766544321  33557788888887654332110        12466788899999


Q ss_pred             ecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655          346 LESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       346 l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      ++...+..+..    .....+++|++|+|+.+.-.    .++.-+-..++|+.|.+..
T Consensus       155 l~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~L~----~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         155 LANNNLTELPA----GLLNGLENLDTLLLQENSLY----TIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             CTTSCCSCCCT----TTTTTCTTCCEEECCSSCCC----CCCTTTTTTCCCSEEECCS
T ss_pred             cccccccccCc----cccccccccceeecccCCCc----ccChhHCCCCCCCEEEecC
Confidence            99886544332    23457889999999764211    1222223578999998875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.66  E-value=1.4e-05  Score=69.23  Aligned_cols=18  Identities=22%  Similarity=0.242  Sum_probs=12.2

Q ss_pred             HhhcCCcccEeeecchhh
Q 043655          334 FLSGLSHARSLTLESPCI  351 (512)
Q Consensus       334 ~l~~l~~l~~L~l~~~~~  351 (512)
                      .+..+++|+.|+++++.+
T Consensus       135 ~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         135 KLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHTTTTTCSEEEECSSHH
T ss_pred             cccCCCccceeecCCCcc
Confidence            466677777777776653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=2.9e-05  Score=69.27  Aligned_cols=91  Identities=13%  Similarity=0.175  Sum_probs=57.9

Q ss_pred             cCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC---ccchhhhhcCCCCcccceecc
Q 043655          149 TDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN---QPCLLDLFTDSSFPHLKKLDL  225 (512)
Q Consensus       149 ~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---~~~l~~l~~~~~~p~L~~L~L  225 (512)
                      ......+|..++  +++++|+|+++.. -.+++..  ..++++|++|+|+++.+..   ...+      ..+++++.|.+
T Consensus        17 ~~~l~~iP~~l~--~~l~~L~Ls~n~i-~~l~~~~--f~~l~~L~~L~ls~n~~~~~i~~~~f------~~l~~l~~l~~   85 (242)
T d1xwdc1          17 ESKVTEIPSDLP--RNAIELRFVLTKL-RVIQKGA--FSGFGDLEKIEISQNDVLEVIEADVF------SNLPKLHEIRI   85 (242)
T ss_dssp             SCSCSSCCSCSC--SCCSEEEEESCCC-CEECTTT--TTTCTTCCEEEEESCTTCCEECSSSE------ESCTTCCEEEE
T ss_pred             CCCCCCcCCCCC--CCCCEEECcCCcC-CccChhH--hhccchhhhhhhccccccceeecccc------ccccccccccc
Confidence            334456776554  4788999988532 2344322  3468899999998875533   1122      35788888887


Q ss_pred             ccccccc----hhcccccccceeeecccc
Q 043655          226 DACYGLK----QLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       226 ~~~~~l~----~l~~~cp~Le~L~l~~c~  250 (512)
                      ..+..+.    ..+..+++|+.|.+.++.
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCC
T ss_pred             cccccccccccccccccccccccccchhh
Confidence            6654332    344677888888888874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=0.0001  Score=58.09  Aligned_cols=87  Identities=23%  Similarity=0.167  Sum_probs=58.3

Q ss_pred             CCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--c
Q 043655          153 FNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--G  230 (512)
Q Consensus       153 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~  230 (512)
                      ..++. +..+++|++|+|++|.. -.+|+ .  ...+++|++|+++++.+.+-+++      ..+|+|+.|++.++.  .
T Consensus        11 ~~l~~-l~~l~~L~~L~ls~N~l-~~lp~-~--~~~l~~L~~L~l~~N~i~~l~~~------~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3          11 TVLCH-LEQLLLVTHLDLSHNRL-RALPP-A--LAALRCLEVLQASDNALENVDGV------ANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             SSCCC-GGGGTTCCEEECCSSCC-CCCCG-G--GGGCTTCCEEECCSSCCCCCGGG------TTCSSCCEEECCSSCCCS
T ss_pred             CCCcc-cccCCCCCEEECCCCcc-Ccchh-h--hhhhhcccccccccccccccCcc------ccccccCeEECCCCccCC
Confidence            34443 55678889999888532 13332 1  34688899999988888764433      468888888888775  3


Q ss_pred             cch--hcccccccceeeecccc
Q 043655          231 LKQ--LKVGCRALEDLTLDNCI  250 (512)
Q Consensus       231 l~~--l~~~cp~Le~L~l~~c~  250 (512)
                      +..  -+..||+|+.|++.+..
T Consensus        80 ~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECTTSG
T ss_pred             CCCchhhcCCCCCCEEECCCCc
Confidence            332  24678888888887754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.32  E-value=4.1e-05  Score=60.55  Aligned_cols=73  Identities=21%  Similarity=0.177  Sum_probs=44.7

Q ss_pred             cEEEEecccCccccCCCccccccCcccceEEeeeEEeeCc-cchhhhhcCCCCcccceecccccc--ccchhcccccccc
Q 043655          166 RVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQ-PCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRALE  242 (512)
Q Consensus       166 ~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le  242 (512)
                      +.|+|+++  .++..+   ....+++|++|+|+++.+..- ..+      ..+++|+.|++.++.  .+.. +..+|+|+
T Consensus         1 R~L~Ls~n--~l~~l~---~l~~l~~L~~L~ls~N~l~~lp~~~------~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~   68 (124)
T d1dcea3           1 RVLHLAHK--DLTVLC---HLEQLLLVTHLDLSHNRLRALPPAL------AALRCLEVLQASDNALENVDG-VANLPRLQ   68 (124)
T ss_dssp             SEEECTTS--CCSSCC---CGGGGTTCCEEECCSSCCCCCCGGG------GGCTTCCEEECCSSCCCCCGG-GTTCSSCC
T ss_pred             CEEEcCCC--CCCCCc---ccccCCCCCEEECCCCccCcchhhh------hhhhcccccccccccccccCc-cccccccC
Confidence            46777774  333222   135688999999998887652 222      257777777777764  3333 34566666


Q ss_pred             eeeecccc
Q 043655          243 DLTLDNCI  250 (512)
Q Consensus       243 ~L~l~~c~  250 (512)
                      .|++.++.
T Consensus        69 ~L~l~~N~   76 (124)
T d1dcea3          69 ELLLCNNR   76 (124)
T ss_dssp             EEECCSSC
T ss_pred             eEECCCCc
Confidence            66666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=1.3e-05  Score=78.64  Aligned_cols=104  Identities=14%  Similarity=0.196  Sum_probs=67.6

Q ss_pred             CCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCc--cchhhhhcCCCCcccceecccccc----ccchh--
Q 043655          163 DSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQ--PCLLDLFTDSSFPHLKKLDLDACY----GLKQL--  234 (512)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~l~~l~~~~~~p~L~~L~L~~~~----~l~~l--  234 (512)
                      .+|+.|+++++  .++.....-....+++|++|.|.+|.+.+.  ..+...+  ..+|+|+.|+|.++.    ++..+  
T Consensus         2 ~~l~~ld~~~~--~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L--~~~~~L~~LdLs~N~i~~~~~~~l~~   77 (460)
T d1z7xw1           2 LDIQSLDIQCE--ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL--RVNPALAELNLRSNELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEEESC--CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH--HTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCCCEEEeeCC--cCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHH--hcCCCCCEEECcCCcCChHHHHHHHH
Confidence            46889999873  222111011234689999999999987653  1333334  379999999998875    22222  


Q ss_pred             --cccccccceeeeccccCccceeE--------eccCcceEEEeeec
Q 043655          235 --KVGCRALEDLTLDNCIQLCGLDI--------FGTKLERLRVASCF  271 (512)
Q Consensus       235 --~~~cp~Le~L~l~~c~~l~~~~v--------~~~~L~~L~l~~c~  271 (512)
                        ....++|+.|++.+|. +++..+        ..++|++|.+.++.
T Consensus        78 ~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence              2345689999999996 333211        23789999998764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.09  E-value=0.00035  Score=59.57  Aligned_cols=98  Identities=17%  Similarity=0.196  Sum_probs=58.8

Q ss_pred             EEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceec
Q 043655          145 IEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLD  224 (512)
Q Consensus       145 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~  224 (512)
                      ++........+|..+.  +++++|.|+++...-..+..  ...++++|++|+|+++.+..-..  ..+  ..+++|+.|+
T Consensus        13 v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~--~f~~l~~L~~L~L~~N~i~~~~~--~~~--~~~~~L~~L~   84 (192)
T d1w8aa_          13 VDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDG--LFGRLPHLVKLELKRNQLTGIEP--NAF--EGASHIQELQ   84 (192)
T ss_dssp             EECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSC--SGGGCTTCCEEECCSSCCCCBCT--TTT--TTCTTCCEEE
T ss_pred             EEEeCCCcCccCCCCC--CCCCEEEeCCCCCccccccc--ccCCCceEeeeeccccccccccc--ccc--ccccccceee
Confidence            4444445556776653  67888888885321112222  23568888888888877654211  111  3577888888


Q ss_pred             ccccc--cc-chhcccccccceeeecccc
Q 043655          225 LDACY--GL-KQLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       225 L~~~~--~l-~~l~~~cp~Le~L~l~~c~  250 (512)
                      |.++.  .+ ...+.+.++|++|+|.++.
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             eccccccccCHHHHhCCCcccccccCCcc
Confidence            87765  22 2345567777777777764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.08  E-value=3.4e-05  Score=66.59  Aligned_cols=86  Identities=16%  Similarity=0.089  Sum_probs=44.8

Q ss_pred             CCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--c
Q 043655          153 FNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--G  230 (512)
Q Consensus       153 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~  230 (512)
                      ..+|..+..+++|++|+|++|  .++-.+   ...++++|++|+|+++.+.+-+.+..     .+++|+.|++.++.  .
T Consensus        38 ~~l~~sl~~L~~L~~L~Ls~n--~I~~i~---~l~~l~~L~~L~Ls~N~i~~i~~~~~-----~~~~L~~L~l~~N~i~~  107 (198)
T d1m9la_          38 EKMDATLSTLKACKHLALSTN--NIEKIS---SLSGMENLRILSLGRNLIKKIENLDA-----VADTLEELWISYNQIAS  107 (198)
T ss_dssp             CCCHHHHHHTTTCCEEECSEE--EESCCC---CHHHHTTCCEEECCEEEECSCSSHHH-----HHHHCCEEECSEEECCC
T ss_pred             hhhhhHHhcccccceeECccc--CCCCcc---cccCCccccChhhccccccccccccc-----ccccccccccccccccc
Confidence            344555556777777877774  222111   12457777888887777754222211     23456666665543  1


Q ss_pred             cchhcccccccceeeeccc
Q 043655          231 LKQLKVGCRALEDLTLDNC  249 (512)
Q Consensus       231 l~~l~~~cp~Le~L~l~~c  249 (512)
                      +.. +..+++|+.|++.++
T Consensus       108 l~~-~~~l~~L~~L~L~~N  125 (198)
T d1m9la_         108 LSG-IEKLVNLRVLYMSNN  125 (198)
T ss_dssp             HHH-HHHHHHSSEEEESEE
T ss_pred             ccc-ccccccccccccccc
Confidence            211 234455555555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00055  Score=60.50  Aligned_cols=60  Identities=20%  Similarity=0.233  Sum_probs=35.9

Q ss_pred             CcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccc----hhcccccccceeeeccccCc
Q 043655          189 FRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLK----QLKVGCRALEDLTLDNCIQL  252 (512)
Q Consensus       189 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~----~l~~~cp~Le~L~l~~c~~l  252 (512)
                      ++++++|+|+++.+..-..  ..+  .++++|++|+|.++.-..    ..+.+++.+++|.+..+..+
T Consensus        28 ~~~l~~L~Ls~n~i~~l~~--~~f--~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l   91 (242)
T d1xwdc1          28 PRNAIELRFVLTKLRVIQK--GAF--SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL   91 (242)
T ss_dssp             CSCCSEEEEESCCCCEECT--TTT--TTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTC
T ss_pred             CCCCCEEECcCCcCCccCh--hHh--hccchhhhhhhccccccceeeccccccccccccccccccccc
Confidence            4589999999887754111  011  367778888877764221    12345667777766665443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.35  E-value=0.0024  Score=54.14  Aligned_cols=105  Identities=15%  Similarity=0.086  Sum_probs=67.0

Q ss_pred             cCCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655          138 HNVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS  216 (512)
Q Consensus       138 ~~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~  216 (512)
                      .+++.|++....-. ..++...| ..++|+.|+|+++.. ..+++.  ....+++|++|+|+++.+..-..  +.|  .+
T Consensus        29 ~~l~~L~Ls~N~i~-~~~~~~~f~~l~~L~~L~L~~N~i-~~~~~~--~~~~~~~L~~L~Ls~N~l~~l~~--~~F--~~  100 (192)
T d1w8aa_          29 LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQL-TGIEPN--AFEGASHIQELQLGENKIKEISN--KMF--LG  100 (192)
T ss_dssp             TTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCC-CCBCTT--TTTTCTTCCEEECCSCCCCEECS--SSS--TT
T ss_pred             CCCCEEEeCCCCCc-ccccccccCCCceEeeeecccccc-cccccc--ccccccccceeeeccccccccCH--HHH--hC
Confidence            35666666532211 12333333 689999999988522 123332  23568999999999988765211  112  47


Q ss_pred             Ccccceecccccc--cc-chhcccccccceeeecccc
Q 043655          217 FPHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCI  250 (512)
Q Consensus       217 ~p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~  250 (512)
                      +++|++|+|.++.  .+ ...+...++|++|+|.+..
T Consensus       101 l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence            8999999999886  22 2345677888888887764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.28  E-value=0.0031  Score=58.48  Aligned_cols=135  Identities=17%  Similarity=0.091  Sum_probs=77.7

Q ss_pred             HhcCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCcc-ccCCCccccccCcccceEEeeeEEeeCccchhhhhcC
Q 043655          136 IRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGF-RLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTD  214 (512)
Q Consensus       136 ~~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~  214 (512)
                      ...++++|++..  .+...+|..   .++|++|+|+++  .+ .+|.      .+.+|++|.+.++.+..-..       
T Consensus        36 ~~~~l~~LdLs~--~~L~~lp~~---~~~L~~L~Ls~N--~l~~lp~------~~~~L~~L~l~~n~l~~l~~-------   95 (353)
T d1jl5a_          36 LDRQAHELELNN--LGLSSLPEL---PPHLESLVASCN--SLTELPE------LPQSLKSLLVDNNNLKALSD-------   95 (353)
T ss_dssp             HHHTCSEEECTT--SCCSCCCSC---CTTCSEEECCSS--CCSSCCC------CCTTCCEEECCSSCCSCCCS-------
T ss_pred             HHcCCCEEEeCC--CCCCCCCCC---CCCCCEEECCCC--CCccccc------chhhhhhhhhhhcccchhhh-------
Confidence            335788777653  334466752   468999999874  33 3332      36789999988776543211       


Q ss_pred             CCCcccceecccccc--ccchhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEe
Q 043655          215 SSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNW  292 (512)
Q Consensus       215 ~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~  292 (512)
                       -.+.|++|++.++.  .+.. ...++.|+.|++.++... ......+.+..+.+..+......   ..-..+.++.+.+
T Consensus        96 -lp~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~---~l~~l~~l~~L~l  169 (353)
T d1jl5a_          96 -LPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELP---ELQNLPFLTAIYA  169 (353)
T ss_dssp             -CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCC---CCTTCTTCCEEEC
T ss_pred             -hccccccccccccccccccc-hhhhccceeecccccccc-ccccccccccchhhccccccccc---cccccccceeccc
Confidence             13568899888775  3332 345788888888877532 22222356666666554322110   0012456666666


Q ss_pred             eccc
Q 043655          293 EYNA  296 (512)
Q Consensus       293 ~~~~  296 (512)
                      .+..
T Consensus       170 ~~n~  173 (353)
T d1jl5a_         170 DNNS  173 (353)
T ss_dssp             CSSC
T ss_pred             cccc
Confidence            5543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.07  E-value=0.0013  Score=54.40  Aligned_cols=116  Identities=14%  Similarity=0.100  Sum_probs=72.0

Q ss_pred             CCCcceEEeeccc-cCCC------ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcc
Q 043655          284 ASKLKVLNWEYNA-ITAS------SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSN  356 (512)
Q Consensus       284 ~p~L~~L~~~~~~-~~~~------~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~  356 (512)
                      .|+|++|.+++.. ++..      ..+...+.|++++++.+...+.    ....+...++..+.++.+++....+.....
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~----~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP----VAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH----HHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHH----HHHHHHHHHhhcccchhhhhccccccchhH
Confidence            4566666665422 2111      1234567788888876643222    234567778888999999998765422221


Q ss_pred             cccccccccccccceEEEEeeccCCc---HHHHHHHHhhCCCCcEEEEEe
Q 043655          357 RNYFTNLHTFTNLKSLELHTGFNKHN---VQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       357 ~~~~~~~~~~~~L~~L~L~~~~~~~~---~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      ......+...++|+.++|..+....+   ...+...++.+++|++|.+++
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            11223555678899988875433322   345778899999999999865

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0039  Score=50.81  Aligned_cols=72  Identities=17%  Similarity=0.123  Sum_probs=35.0

Q ss_pred             CCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc
Q 043655          152 YFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY  229 (512)
Q Consensus       152 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~  229 (512)
                      ....|..+...++|+.|.|.++..--.+++.  ...++++|+.|+|+++.+..-..  ..+  ..+++|++|+|.++.
T Consensus        20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~--~f~~l~~L~~L~Ls~N~l~~i~~--~~f--~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          20 ALDSLHHLPGAENLTELYIENQQHLQHLELR--DLRGLGELRNLTIVKSGLRFVAP--DAF--HFTPRLSRLNLSFNA   91 (156)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGG--GSCSCCCCSEEECCSSCCCEECT--TGG--GSCSCCCEEECCSSC
T ss_pred             CccCcccccCccccCeeecCCCccccccCch--hhccccccCcceeeccccCCccc--ccc--cccccccceeccCCC
Confidence            3445555555667777777542111122221  12356677777776665543110  011  245556666555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.33  E-value=0.0018  Score=53.53  Aligned_cols=97  Identities=7%  Similarity=0.039  Sum_probs=61.9

Q ss_pred             ccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeec-cCC
Q 043655          303 LENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGF-NKH  381 (512)
Q Consensus       303 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~  381 (512)
                      +...+.|++++++.+...+.    ....+...++..+.++.|+|+.+.+...........+...+.|++|+|.... ...
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~----~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDS----EARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHH----HHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             HhhCCccceeeccccccchh----HHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCc
Confidence            34556777777765543222    2344667778888899999988764332222122345567789999997532 111


Q ss_pred             ---cHHHHHHHHhhCCCCcEEEEEe
Q 043655          382 ---NVQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       382 ---~~~~l~~~L~~cp~Le~L~l~~  403 (512)
                         ....+...|+..+.|++|.++.
T Consensus       116 g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_         116 GNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             cHHHHHHHHHHHHhCCCccEeeCcC
Confidence               2345788899999999998865

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=94.32  E-value=0.022  Score=52.30  Aligned_cols=136  Identities=24%  Similarity=0.168  Sum_probs=76.9

Q ss_pred             cccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccchhcccccccceeeeccccCccceeEeccCcceEEEee
Q 043655          190 RSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVAS  269 (512)
Q Consensus       190 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~  269 (512)
                      .+|++|+|+++.+..   +.     ...|+|++|+|.++ .+..+-....+|+.|.+.++.. ..+.--.+.|++|.+.+
T Consensus        38 ~~l~~LdLs~~~L~~---lp-----~~~~~L~~L~Ls~N-~l~~lp~~~~~L~~L~l~~n~l-~~l~~lp~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSS---LP-----ELPPHLESLVASCN-SLTELPELPQSLKSLLVDNNNL-KALSDLPPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSC---CC-----SCCTTCSEEECCSS-CCSSCCCCCTTCCEEECCSSCC-SCCCSCCTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCC---CC-----CCCCCCCEEECCCC-CCcccccchhhhhhhhhhhccc-chhhhhccccccccccc
Confidence            478899998876653   22     24688999999765 4555544557889998888752 22222235788888877


Q ss_pred             eccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecch
Q 043655          270 CFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESP  349 (512)
Q Consensus       270 c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~  349 (512)
                      +.....  .. ....++|+.|.+.+.......  ...+.+..+.+........          ..+..++.++.|.+...
T Consensus       108 n~l~~l--p~-~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~l~~~~~~~~~~----------~~l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         108 NQLEKL--PE-LQNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNNQLEEL----------PELQNLPFLTAIYADNN  172 (353)
T ss_dssp             SCCSSC--CC-CTTCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSSC----------CCCTTCTTCCEEECCSS
T ss_pred             cccccc--cc-hhhhccceeeccccccccccc--cccccccchhhcccccccc----------ccccccccceecccccc
Confidence            643211  11 124567888887766543221  1233444444432221111          11445666777776654


Q ss_pred             h
Q 043655          350 C  350 (512)
Q Consensus       350 ~  350 (512)
                      .
T Consensus       173 ~  173 (353)
T d1jl5a_         173 S  173 (353)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.16  E-value=0.01  Score=48.76  Aligned_cols=96  Identities=15%  Similarity=0.140  Sum_probs=60.0

Q ss_pred             CcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccC-CcH
Q 043655          305 NLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNK-HNV  383 (512)
Q Consensus       305 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~  383 (512)
                      +.|.|++++++.....++.   ....+...+...++++.|+|+.+.+...........+...+.|++|+|+.+.-. ...
T Consensus        13 n~~~L~~L~L~~~~~i~~~---~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKE---RIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHH---HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHH---HHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence            4566777777532212221   234466678888899999998875432221111123446678999999875322 224


Q ss_pred             HHHHHHHhhCCCCcEEEEEe
Q 043655          384 QGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       384 ~~l~~~L~~cp~Le~L~l~~  403 (512)
                      ..+...|+.++.|++|.|..
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADN  109 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHHHhCCcCCEEECCC
Confidence            45667788889999998864

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.0031  Score=51.76  Aligned_cols=79  Identities=22%  Similarity=0.088  Sum_probs=39.1

Q ss_pred             cCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccc----------c
Q 043655          162 SDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYG----------L  231 (512)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~----------l  231 (512)
                      +++|++|+|++|... .+.+.......+++|+.|+|+++.+.+-..+..+    ..++|+.|++.++.-          .
T Consensus        64 ~~~L~~L~Ls~N~i~-~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l----~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          64 IPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSERELDKI----KGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             CTTCCCCCCCSSCCC-CCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH----TTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             CCCCCEeeCCCcccc-CCchhHHHHhhCCcccccccccCccccchhhhhh----hccccceeecCCCCcCcCcccchhHH
Confidence            456666666664211 1111111123466777777777666654333222    344566666666531          1


Q ss_pred             chhcccccccceee
Q 043655          232 KQLKVGCRALEDLT  245 (512)
Q Consensus       232 ~~l~~~cp~Le~L~  245 (512)
                      ..+...+|+|+.|+
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence            13344566666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.041  Score=44.32  Aligned_cols=79  Identities=13%  Similarity=-0.013  Sum_probs=45.2

Q ss_pred             cCCccEEEEecccCccccCCCccccccCcccceEEeeeEE-eeC--ccchhhhhcCCCCcccceecccccc--cc-chhc
Q 043655          162 SDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVI-LFN--QPCLLDLFTDSSFPHLKKLDLDACY--GL-KQLK  235 (512)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~--~~~l~~l~~~~~~p~L~~L~L~~~~--~l-~~l~  235 (512)
                      |...+.++..+. .....|.   ...++++|++|+|.++. +..  ...|      .++++|+.|+|.++.  .+ ...+
T Consensus         7 c~~~~~l~c~~~-~~~~~p~---~l~~l~~l~~L~l~~n~~l~~i~~~~f------~~l~~L~~L~Ls~N~l~~i~~~~f   76 (156)
T d2ifga3           7 PHGSSGLRCTRD-GALDSLH---HLPGAENLTELYIENQQHLQHLELRDL------RGLGELRNLTIVKSGLRFVAPDAF   76 (156)
T ss_dssp             CSSSSCEECCSS-CCCTTTT---TSCSCSCCSEEECCSCSSCCEECGGGS------CSCCCCSEEECCSSCCCEECTTGG
T ss_pred             cCCCCeEEecCC-CCccCcc---cccCccccCeeecCCCccccccCchhh------ccccccCcceeeccccCCcccccc
Confidence            444555665552 1122222   12357888999886543 322  2222      367888888887765  23 2335


Q ss_pred             ccccccceeeecccc
Q 043655          236 VGCRALEDLTLDNCI  250 (512)
Q Consensus       236 ~~cp~Le~L~l~~c~  250 (512)
                      ...++|+.|+|.++.
T Consensus        77 ~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          77 HFTPRLSRLNLSFNA   91 (156)
T ss_dssp             GSCSCCCEEECCSSC
T ss_pred             cccccccceeccCCC
Confidence            567777777777765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.027  Score=45.81  Aligned_cols=62  Identities=27%  Similarity=0.305  Sum_probs=40.7

Q ss_pred             ccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchh-cccccccceeeecccc
Q 043655          187 GGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQL-KVGCRALEDLTLDNCI  250 (512)
Q Consensus       187 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l-~~~cp~Le~L~l~~c~  250 (512)
                      ..+++|++|+|+++.+.+-..+...+  ..||+|+.|+|.++.  .+..+ ....+.|+.|.+.+..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~--~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIV--QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHH--HHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHH--hhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            35888999999988887654443333  257888888888765  33322 1234567777777764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.63  E-value=0.032  Score=45.48  Aligned_cols=97  Identities=16%  Similarity=0.146  Sum_probs=59.4

Q ss_pred             cCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccC-Cc
Q 043655          304 ENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNK-HN  382 (512)
Q Consensus       304 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~  382 (512)
                      .+.|.|+++++......++   .....+...+...++++.|+++...+...........+...+.++.|.+..+... ..
T Consensus        14 ~~~~~L~~L~L~~~~~i~~---~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPV---PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCH---HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             hcCCCCcEEEcCCCCCCCH---HHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            4668888888864322222   2344567777888999999998775422221111123345678888888754322 22


Q ss_pred             HHHHHHHHhhCCCCcEEEEEe
Q 043655          383 VQGLACLFRSSPSIHTLILKI  403 (512)
Q Consensus       383 ~~~l~~~L~~cp~Le~L~l~~  403 (512)
                      ...+...+..+++|+.++|..
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDN  111 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCC
T ss_pred             HHHHHHHHHhCccccEEeecc
Confidence            345566778888888887764