Citrus Sinensis ID: 043678
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 303 | 2.2.26 [Sep-21-2011] | |||||||
| Q5F478 | 990 | Serine/threonine-protein | yes | no | 0.702 | 0.215 | 0.274 | 1e-09 | |
| Q6AWW5 | 524 | Ankyrin repeat-containing | no | no | 0.660 | 0.381 | 0.271 | 3e-08 | |
| Q8N8A2 | 993 | Serine/threonine-protein | yes | no | 0.706 | 0.215 | 0.244 | 1e-07 | |
| Q502K3 | 1071 | Serine/threonine-protein | yes | no | 0.597 | 0.169 | 0.267 | 2e-07 | |
| Q5ZIJ9 | 954 | E3 ubiquitin-protein liga | no | no | 0.851 | 0.270 | 0.239 | 3e-07 | |
| Q5ZLC8 | 1073 | Serine/threonine-protein | no | no | 0.650 | 0.183 | 0.234 | 4e-07 | |
| P16157 | 1881 | Ankyrin-1 OS=Homo sapiens | no | no | 0.689 | 0.111 | 0.270 | 1e-06 | |
| O15084 | 1053 | Serine/threonine-protein | no | no | 0.587 | 0.169 | 0.264 | 4e-06 | |
| B2RXR6 | 993 | Serine/threonine-protein | yes | no | 0.699 | 0.213 | 0.246 | 6e-06 | |
| Q505D1 | 1053 | Serine/threonine-protein | no | no | 0.795 | 0.228 | 0.253 | 9e-06 |
| >sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 110/255 (43%), Gaps = 42/255 (16%)
Query: 69 VNAKGDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEE--------LENRIEAFRQM--- 116
V+ G+TPLH+AA++GH ++ LI A A+ G L + R++
Sbjct: 335 VDKDGNTPLHVAARYGHELLINTLITSGADTAKCGIHNMFPLHLAALNAHSDCCRKLLSS 394
Query: 117 ---IRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRI 173
I ++ T LH A + GNV+ KL +++ +D +T + + + I
Sbjct: 395 GFEIDTPDSFGRTCLHAAAAGGNVECIKLLQSSGADFNKKDKRGRTPLHYAAANCHFHCI 454
Query: 174 QTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDA--RT 231
+T L+ N I ETD +G TP+ + +D DRK L + + RT
Sbjct: 455 ET---------LVTTGAN-INETDDWGRTPLHYAA-ASDMDRKKNILGNSHENAEELERT 503
Query: 232 VERIISENPKCYELV----------DNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLID 281
E E C E + D G+N +HYA H L LLE NS ++ +
Sbjct: 504 SEMKEKEAALCLEFLLQNDANPSIQDKEGYNTVHYAAAYGHRQCLELLLEKNS---NMFE 560
Query: 282 EGDAKGN-TPLHVLA 295
E D+ +PLH+ A
Sbjct: 561 ESDSSATKSPLHLAA 575
|
Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Gallus gallus (taxid: 9031) |
| >sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 114/254 (44%), Gaps = 54/254 (21%)
Query: 29 LTAKAKNTILHINIISSERENVSTKFVEEILE----KCPALLLQVNAKGDTPLHLAAKFG 84
+TA+ +T LH + RE + +E I E + LL + N G+T L++AA++G
Sbjct: 12 MTARRDDTPLHTAV----REGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYG 67
Query: 85 HFDIVRVLIE---------RAK--------LAQRGD-EELENRIEAFRQMIRMVNNEKNT 126
+ D+V++L++ +AK A+ G+ + L+ IEA ++ ++ K T
Sbjct: 68 YTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTT 127
Query: 127 ALHEAVS--HGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
ALH A S HG + F L K +L I R S+ KT + R N + K
Sbjct: 128 ALHTAASQGHGEIVCFLLDKGVDLAAIAR-SNGKTALHSAAR---------NGHTVIVKK 177
Query: 185 LLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYE 244
L+EKK ++ D+ G TALH+A + V+ ++ +
Sbjct: 178 LIEKKAGMVTRVDKKG----------------QTALHMAVKGQNTEIVDVLMEADGSLIN 221
Query: 245 LVDNRGWNFLHYAM 258
DN+G LH A+
Sbjct: 222 SADNKGNTPLHIAV 235
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 112/262 (42%), Gaps = 48/262 (18%)
Query: 34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLI 93
K T LH ++I+ + + + EI + A+ ++ +AKG TPL LA +GH D V +L+
Sbjct: 634 KRTPLHASVINGH--TLCLRLLLEIADNPEAVDVK-DAKGQTPLMLAVAYGHIDAVSLLL 690
Query: 94 ERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFR 153
E+ EA + ++ TALH + G+ + ++ + ++ +
Sbjct: 691 EK---------------EANVDTVDILG---CTALHRGIMTGHEECVQMLLEQEVSILCK 732
Query: 154 DSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADK 213
DS +T + H R + L L ++ K D G+TP
Sbjct: 733 DSRGRTPL-----HYAAARGHATWLSELLQMALSEEDCCFK--DNQGYTP---------- 775
Query: 214 DRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273
LH A G+ +E ++ + KC+ + LH A+++ H G +LL
Sbjct: 776 ------LHWACYNGNENCIEVLLEQ--KCFRKFIGNPFTPLHCAIINDH-GNCASLLL-G 825
Query: 274 SLARSLIDEGDAKGNTPLHVLA 295
++ S++ D KG TPLH A
Sbjct: 826 AIDSSIVSCRDDKGRTPLHAAA 847
|
Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Homo sapiens (taxid: 9606) |
| >sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 2e-07, Method: Composition-based stats.
Identities = 61/228 (26%), Positives = 95/228 (41%), Gaps = 47/228 (20%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALH 129
+A+G TPL LA GH D V +L+ER M + TALH
Sbjct: 679 DAEGQTPLMLAVLGGHTDCVHLLLERGACPD------------------MKDRRGRTALH 720
Query: 130 EAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFR--HLDLFRIQTNSIYAALPKLLE 187
G D ++N+ ++ RD ++ + H D+ +N + AA +
Sbjct: 721 RGAVMGREDCLTALLSHNVSVLSRDFQGRSALHLAASCGHADIL---SNLLSAA-----D 772
Query: 188 KKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVD 247
+ TD++G+TP H AA G +E ++ P C + +
Sbjct: 773 HSQPQDPLTDRHGYTPA----------------HWAAYHGHEDCLEVLLELKP-C-SIQE 814
Query: 248 NRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLA 295
+ LH A+++ H G LLE +S+ SL++ DAKG TPLH A
Sbjct: 815 GNPFTPLHCALINGHSGSAELLLE-SSVCNSLVNIRDAKGRTPLHAAA 861
|
Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Danio rerio (taxid: 7955) |
| >sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus GN=MIB2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 131/321 (40%), Gaps = 63/321 (19%)
Query: 13 NSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAK 72
N++ K V+E LL+ K ++ +I + N + V E+L+K P + N +
Sbjct: 408 NAKESKSTLITVLEKLLSQKTESDHAGCLVIWAALNNAAK--VRELLQKYPDKVDNKN-Q 464
Query: 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEE---------LENRIEAFRQMIR----- 118
G T L +A+ GH D+V++L++ DEE N+ + R ++
Sbjct: 465 GRTALQIASYQGHLDVVKILLQAHATVNLRDEEGDTALHYAAFGNQADVARVLMAKGAGA 524
Query: 119 -MVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKT------------------ 159
++NN K TAL+ AVS G ++ + N + DS T
Sbjct: 525 DLLNNAKCTALYVAVSQGFTEVVQALCELNCDVNLPDSHGDTPLHYAITADYKVIIEILT 584
Query: 160 ---NILFKFRHLDLFRIQTNSIYA----ALPKLLEKKKNLIKETDQYGWTPIQSTSNIAD 212
NI F ++ F + S A+ K+L + + L+ +
Sbjct: 585 EVPNIDFTVQNCQGFNLLHYSALKGNKLAIKKILARARQLVD----------------SK 628
Query: 213 KDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272
K+ TALHLAA E +I E + +NR LH A++ HVG ++ L+
Sbjct: 629 KEDGFTALHLAALNNHKEVAEILIKEGRCDVNVKNNRNQTPLHLAIIQGHVGLVQLLVSE 688
Query: 273 NSLARSLIDEGDAKGNTPLHV 293
S ++ D G+T +H+
Sbjct: 689 G----SDVNAEDEDGDTAMHI 705
|
E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. Gallus gallus (taxid: 9031) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5ZLC8|ANR52_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Gallus gallus GN=ANKRD52 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 98/260 (37%), Gaps = 63/260 (24%)
Query: 38 LHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAK 97
LH+ I S ER +++ ++ G TPL LA GH D V +L+E+
Sbjct: 667 LHLLIDSGERADITDV---------------MDIHGQTPLMLAIMNGHVDCVHLLLEKGS 711
Query: 98 LAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDE 157
A D+ TALH G D ++ ++ RD
Sbjct: 712 TADAADK------------------RGRTALHRGAVTGCEDCLAALLDHDAFVLCRDFKG 753
Query: 158 KTNILF--KFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDR 215
+T I F HL++ R + + P L D G++P
Sbjct: 754 RTPIHFASACGHLEILRTLLQAALSTDP--------LDSVVDYSGYSP------------ 793
Query: 216 KMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSL 275
+H A+ G +E ++ NP Y ++ + LH A+++ L+E +L
Sbjct: 794 ----MHWASYSGHEDCLELLLEHNPFAY--LEGNPFTPLHCAVINNQDSTAEMLVE--AL 845
Query: 276 ARSLIDEGDAKGNTPLHVLA 295
+++ DAKG TPLH A
Sbjct: 846 GAKIVNSRDAKGRTPLHAAA 865
|
Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Gallus gallus (taxid: 9031) |
| >sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 104/266 (39%), Gaps = 57/266 (21%)
Query: 29 LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDI 88
L A +T LHI E V +E + C + KG TPLH+AAK+G +
Sbjct: 498 LATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRV 551
Query: 89 VRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN 147
+L+ER A G L T LH AV H N+D+ KL
Sbjct: 552 AELLLERDAHPNAAGKNGL-------------------TPLHVAVHHNNLDIVKL----- 587
Query: 148 LILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQST 207
L+ R + + L + AA +E ++L+ QYG
Sbjct: 588 --LLPRGGSPHSPAWNGYTPLHI---------AAKQNQVEVARSLL----QYGG------ 626
Query: 208 SNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLR 267
S A+ + +T LHLAA +G A V ++S+ L + G LH HV
Sbjct: 627 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVAD 685
Query: 268 NLLENNSLARSLIDEGDAKGNTPLHV 293
L+++ ++D G TPLHV
Sbjct: 686 VLIKHG----VMVDATTRMGYTPLHV 707
|
Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils. Homo sapiens (taxid: 9606) |
| >sp|O15084|ANR28_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5 | Back alignment and function description |
|---|
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 93/227 (40%), Gaps = 49/227 (21%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALH 129
N+ G TPL LAA GH + V VLI + D L K T +H
Sbjct: 580 NSSGRTPLDLAAFKGHVECVDVLINQGASILVKDYIL-----------------KRTPIH 622
Query: 130 EAVSHGNVDLFKLKKTN----NLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKL 185
A ++G+ + +L N N + I +D + +T ++ L + T+ +Y+ L
Sbjct: 623 AAATNGHSECLRLLIGNAEPQNAVDI-QDGNGQTPLM-----LSVLNGHTDCVYS----L 672
Query: 186 LEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYEL 245
L K N + D++G TALH A G V+ ++ KC L
Sbjct: 673 LNKGAN-VDAKDKWG----------------RTALHRGAVTGHEECVDALLQHGAKCL-L 714
Query: 246 VDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLH 292
D+RG +H + H+G L LL++ + + D G T LH
Sbjct: 715 RDSRGRTPIHLSAACGHIGVLGALLQSAASMDANPATADNHGYTALH 761
|
Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation. Homo sapiens (taxid: 9606) |
| >sp|B2RXR6|ANR44_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Mus musculus GN=Ankrd44 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 107/264 (40%), Gaps = 52/264 (19%)
Query: 34 KNTILHINIISSERENVSTKFVEEILEKC--PALLLQVNAKGDTPLHLAAKFGHFDIVRV 91
K T LH ++I N T + +LE P ++ +AKG TPL LA +GH D V +
Sbjct: 634 KRTPLHASVI-----NGHTLCLRLLLETADNPEVVDVKDAKGQTPLMLAVAYGHIDAVSL 688
Query: 92 LIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILI 151
L+E+ EA + +V TALH + G+ + ++ ++
Sbjct: 689 LLEK---------------EANVDAVDIVG---CTALHRGIMTGHEECVQMLLEQEASIL 730
Query: 152 FRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIA 211
+DS +T + H R + L L ++ +K D G+TP
Sbjct: 731 CKDSRGRTPL-----HYAAARGHATWLNELLQIALSEEDCCLK--DNQGYTP-------- 775
Query: 212 DKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLE 271
LH A G+ +E ++ + KC+ + LH A+++ H LL
Sbjct: 776 --------LHWACYNGNENCIEVLLEQ--KCFRKFIGNPFTPLHCAIINGHESCASLLL- 824
Query: 272 NNSLARSLIDEGDAKGNTPLHVLA 295
++ S++ D KG T LH A
Sbjct: 825 -GAIDPSIVSCRDDKGRTTLHAAA 847
|
Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Mus musculus (taxid: 10090) |
| >sp|Q505D1|ANR28_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 117/300 (39%), Gaps = 59/300 (19%)
Query: 23 DVIESLLTAKAK--------NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGD 74
D + SLL A T LH ++ E V+ +L+ LL+ +++G
Sbjct: 667 DCVYSLLNKGANVDAKDKWGRTALHRGAVTGHEE-----CVDALLQHGAKCLLR-DSRGR 720
Query: 75 TPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSH 134
TP+HL+A GH ++ L++ A + +V+N TALH A +
Sbjct: 721 TPIHLSAACGHIGVLGALLQSAT--------------SVDANPAVVDNHGYTALHWACYN 766
Query: 135 GNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEK-KKNLI 193
G+ +L + +F+ D F L I N A L++ +++
Sbjct: 767 GHETCVELLLEQD---VFQKIDGNA-----FSPLHCAVINDNE--GAAEMLIDSLGASIV 816
Query: 194 KETDQYGWTPIQSTS------------------NIADKDRKMTALHLAAGKGDARTVERI 235
TD G TP+ + + N AD K T L +AA G TVE +
Sbjct: 817 NATDSKGRTPLHAAAFTDHVECLQLLLSQNAQVNSADSTGK-TPLMMAAENGQTNTVEML 875
Query: 236 ISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLA 295
+S L D LH A H +LE + R+LI+ +A TPLHV A
Sbjct: 876 VSSASADLTLQDKSKNTALHLACGKGHETSALLILEKIT-DRNLINATNAALQTPLHVAA 934
|
Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 303 | ||||||
| 255585399 | 575 | ankyrin repeat-containing protein, putat | 0.953 | 0.502 | 0.393 | 3e-51 | |
| 224127106 | 575 | predicted protein [Populus trichocarpa] | 0.963 | 0.507 | 0.362 | 9e-47 | |
| 224127079 | 394 | predicted protein [Populus trichocarpa] | 0.960 | 0.738 | 0.365 | 5e-46 | |
| 224127098 | 399 | predicted protein [Populus trichocarpa] | 0.960 | 0.729 | 0.359 | 4e-42 | |
| 224127104 | 405 | predicted protein [Populus trichocarpa] | 0.960 | 0.718 | 0.359 | 6e-42 | |
| 224145572 | 395 | predicted protein [Populus trichocarpa] | 0.943 | 0.724 | 0.340 | 6e-37 | |
| 297745200 | 579 | unnamed protein product [Vitis vinifera] | 0.943 | 0.493 | 0.322 | 8e-32 | |
| 359478071 | 725 | PREDICTED: ankyrin repeat-containing pro | 0.943 | 0.394 | 0.322 | 1e-31 | |
| 359478091 | 637 | PREDICTED: ankyrin-1-like [Vitis vinifer | 0.960 | 0.456 | 0.313 | 1e-31 | |
| 356510752 | 629 | PREDICTED: ankyrin-2-like [Glycine max] | 0.947 | 0.456 | 0.315 | 7e-31 |
| >gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 135/343 (39%), Positives = 194/343 (56%), Gaps = 54/343 (15%)
Query: 1 MDLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIIS-SERENVSTKFVEEIL 59
M L+ +KAA G +PFK+ A + LL K+TILH+N+ S SER ST FV+E L
Sbjct: 27 MSLDLYKAAEDGKIDPFKNFAGPL--DLLVTPIKDTILHLNLASPSER---STSFVKEAL 81
Query: 60 EKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRM 119
+ CP +LLQ+NA GDT LH+AA++GH DIV++LIE + AQ D LE+ EA RQM+RM
Sbjct: 82 DMCPQILLQINADGDTLLHIAARYGHLDIVKLLIEHTR-AQHQD--LESAGEAVRQMLRM 138
Query: 120 VNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILF---KFRHLDLFRIQ-- 174
N K TALHEA + + DL +L + + +D L+ + HL++ I
Sbjct: 139 TNKSKETALHEAARNDHPDLVELLIEQDPDFVHSSNDFGETPLYLASERGHLEVVVIMLK 198
Query: 175 ------------TNSIYAA--------LPKLLEKKKNLIKETDQYGWTPIQSTSNI---- 210
+++AA + +L+KK +L+ + D+ GWTP+ + I
Sbjct: 199 ACTSLAYGGPNGKTALHAAAMHRHGGIVHAILDKKTSLVNKADEMGWTPLHYAAYIGASR 258
Query: 211 ---------------ADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLH 255
ADK R+ TALHLAA + + +++ II + P C +LVDNRGWN H
Sbjct: 259 VVKQLLGYDKYVAYAADKARRRTALHLAACQANIKSMREIIFKCPDCCKLVDNRGWNVAH 318
Query: 256 YAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVR 298
YA++S L+ LL N S L++E DA+GNTPLH+LAA++
Sbjct: 319 YAVISKSDDALKILLANPSCIY-LVNEKDAQGNTPLHLLAALQ 360
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 177/350 (50%), Gaps = 58/350 (16%)
Query: 1 MDLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILE 60
MD FKAA AGN PF++ + LLT +NTILH+ + + E ST FV++ LE
Sbjct: 1 MDPVLFKAAEAGNIGPFENYQTCSLNQLLTPD-ENTILHVYLKNQSSEPESTDFVDKFLE 59
Query: 61 KCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMV 120
+CP LL Q N +G+TPLHL A++GH ++V+VLI+RAK A D E + + + M+RM
Sbjct: 60 RCPPLLFQANKRGETPLHLEARYGHSNVVKVLIDRAK-ALPADPE--SGVTKAKMMLRMT 116
Query: 121 NNEKNTALHEAVS-----------------------HGNVDLFKLKKTNNLILIFRDSDE 157
N E++TALHEA HG L+ L+
Sbjct: 117 NEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAVSIGFLMFSEEHGKV 176
Query: 158 KTNILFKFRHLD---------LFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQ--- 205
IL +D L + Y K+LEK+K L K TD+ GW+P+
Sbjct: 177 VDGILGNCISVDYGGPDGRTALHAASMAANYETARKMLEKEKKLTKTTDENGWSPLHYAS 236
Query: 206 ------------------STSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVD 247
ST++IA+ ++K TALH+AA +G ++ I+S P C +LVD
Sbjct: 237 YCDWSNAPIVEVLLEYDASTASIAETEKKRTALHIAAIQGHVDAMKEIVSRCPACCDLVD 296
Query: 248 NRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAV 297
NRGWN LHYA+ S + L+ LAR L E D KGNTP H++AA+
Sbjct: 297 NRGWNALHYAVASKDTKVFKECLKIPELAR-LQTEKDDKGNTPFHLIAAL 345
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127079|ref|XP_002329386.1| predicted protein [Populus trichocarpa] gi|224127100|ref|XP_002329395.1| predicted protein [Populus trichocarpa] gi|222870436|gb|EEF07567.1| predicted protein [Populus trichocarpa] gi|222870445|gb|EEF07576.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 128/350 (36%), Positives = 178/350 (50%), Gaps = 59/350 (16%)
Query: 1 MDLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILE 60
MD FKAA AGN PF++ + + LLTA +NTILH+ + + E ST FV++ LE
Sbjct: 1 MDPVLFKAAEAGNIGPFENY-QTSLNQLLTAD-ENTILHVYLKNQSSEPESTDFVDKFLE 58
Query: 61 KCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMV 120
+CP LL Q N +G+TPLHLAA+ GH ++V+VLI+RAK A D E + + + M+RM
Sbjct: 59 RCPPLLFQANKRGETPLHLAARNGHSNVVKVLIDRAK-ALPADPE--SGVTKAKMMLRMT 115
Query: 121 NNEKNTALHEAVS-----------------------HGNVDLFKLKKTNNLILIFRDSDE 157
N E++TALHEA HG L+ L+
Sbjct: 116 NEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAASIGFLMFSEEHGKV 175
Query: 158 KTNILFKFRHLD---------LFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQ--- 205
IL +D L + Y K+LEK+K L K TD+ GW+P+
Sbjct: 176 VDGILGNCISVDYGGPDGRTALHAASMAANYETARKMLEKEKKLTKTTDENGWSPLHYAS 235
Query: 206 ------------------STSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVD 247
S ++IA+ ++K TALH+AA +G ++ I+S P C +LVD
Sbjct: 236 YCDWSNAPIVEVLLEYDASAASIAETEKKRTALHIAAIQGHVDAMKEIVSRCPACCDLVD 295
Query: 248 NRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAV 297
NRGWN LHYA+ S + L+ LAR L E D KGNTP H++AA+
Sbjct: 296 NRGWNALHYAVASKDTKVFKECLKIPELAR-LQTEKDDKGNTPFHLIAAL 344
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127098|ref|XP_002329394.1| predicted protein [Populus trichocarpa] gi|222870444|gb|EEF07575.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 125/348 (35%), Positives = 181/348 (52%), Gaps = 57/348 (16%)
Query: 1 MDLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILE 60
MD FKAA+ G+ +PF+ + ++ LLT +NTILH+ + + RE T FV ILE
Sbjct: 7 MDPVLFKAAAEGDIDPFEKY-QTCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVIILE 64
Query: 61 KCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMV 120
CP LL Q N KG+ PLHLAA +GH ++V+VLI+RAK + E+ + ++M+RM
Sbjct: 65 MCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALP---TDSESGVTEAKKMLRMT 121
Query: 121 NNEKNTALHEAVSHGNVDLFK--------------------LKKTNNLILIFRDSDEKT- 159
N E++TALHEA H + + L ++I +R+ K
Sbjct: 122 NEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREEGGKVV 181
Query: 160 -NILFKFRHLDL----FRIQTN-SIYA----ALPKLLEKKKNLIKETDQYGWTPIQ---- 205
IL +D R N +I+ KLLEK+K L + TD+ GW+P+
Sbjct: 182 DGILGNCISVDYGGPNGRTALNAAIWVRDDETARKLLEKEKKLTQTTDENGWSPLHHAAC 241
Query: 206 ----------------STSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNR 249
S + IA+ +++ TALH+AA +G ++ I+S P C ELVDNR
Sbjct: 242 YDWSPRIVQVLLENDASAAYIAETEKRRTALHIAAIQGHVNAMKEIVSRCPACCELVDNR 301
Query: 250 GWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAV 297
GWN LHYA+ S + L+ LAR L + D KGNTP H++AA+
Sbjct: 302 GWNALHYAVASKDRVAFVHCLKIPELAR-LGTKKDDKGNTPFHLIAAL 348
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127104|ref|XP_002329397.1| predicted protein [Populus trichocarpa] gi|222870447|gb|EEF07578.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 125/348 (35%), Positives = 181/348 (52%), Gaps = 57/348 (16%)
Query: 1 MDLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILE 60
MD FKAA+ G+ +PF+ + ++ LLT +NTILH+ + + RE T FV ILE
Sbjct: 13 MDPVLFKAAAEGDIDPFEKY-QTCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVIILE 70
Query: 61 KCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMV 120
CP LL Q N KG+ PLHLAA +GH ++V+VLI+RAK + E+ + ++M+RM
Sbjct: 71 MCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALP---TDSESGVTEAKKMLRMT 127
Query: 121 NNEKNTALHEAVSHGNVDLFK--------------------LKKTNNLILIFRDSDEKT- 159
N E++TALHEA H + + L ++I +R+ K
Sbjct: 128 NEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREERGKVV 187
Query: 160 -NILFKFRHLDL----FRIQTN-SIYA----ALPKLLEKKKNLIKETDQYGWTPIQ---- 205
IL +D R N +I+ KLLEK+K L + TD+ GW+P+
Sbjct: 188 DGILGNCISVDYGGPNGRTALNAAIWVRDDETARKLLEKEKKLTQTTDENGWSPLHHAAC 247
Query: 206 ----------------STSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNR 249
S + IA+ +++ TALH+AA +G ++ I+S P C ELVDNR
Sbjct: 248 YDWSPRIVQVLLENDASAAYIAETEKRRTALHIAAIQGHVNAMKEIVSRCPACCELVDNR 307
Query: 250 GWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAV 297
GWN LHYA+ S + L+ LAR L + D KGNTP H++AA+
Sbjct: 308 GWNALHYAVASKDRVAFVHCLKIPELAR-LGTKKDDKGNTPFHLIAAL 354
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224145572|ref|XP_002325691.1| predicted protein [Populus trichocarpa] gi|222862566|gb|EEF00073.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 173/358 (48%), Gaps = 72/358 (20%)
Query: 1 MDLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILE 60
M+ +KAA AGN PFKD + LLT K KNTILH+ + + + + ST FV +I++
Sbjct: 1 MEPKLYKAAEAGNINPFKDRLPTSLNELLTPK-KNTILHVYLENQRKGSKSTDFVGQIID 59
Query: 61 KCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMV 120
CP LLLQ N KG+ PLH AA++G ++VRVLI+RAK A+ D LE+ + ++M+RM
Sbjct: 60 MCPPLLLQANKKGEIPLHFAARYGRSNVVRVLIDRAK-ARPTD--LESGVTEAKKMLRMT 116
Query: 121 NNEKNTALHEAVS-----------------------HGNVDLFKLKKTNNLILIFRDSDE 157
N EK+TALH A HG L+ NL +R
Sbjct: 117 NEEKDTALHVAARNIQAQVVEILTKEDPEFSYSTNVHGETPLY---IAANLRFNWRFKRH 173
Query: 158 KTN-------ILFKFRHLDLF------RIQTNSIYA---ALPKLLEKKKNLIKETDQYGW 201
+ N IL + ++ + +Y K+LE+ +L + TD GW
Sbjct: 174 EENRKKVINEILSNCKSVEYCGSHGRTALHAAGMYGDHETTRKILERDASLTRRTDDDGW 233
Query: 202 TPIQ-----------------------STSNIADKDRKMTALHLAAGKGDARTVERIISE 238
+P+ S + I D +++ TALHLAA +G I++
Sbjct: 234 SPLHYAVFFRDFVHSVSTVEVLLEHDVSAAYIVDSEKR-TALHLAASRGTWAAAIAIMNT 292
Query: 239 NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAA 296
P ELVD+RGWN LHYA ++ G +R + LI E D GNTPLH+ AA
Sbjct: 293 CPASCELVDSRGWNALHYAAIT-RKGHIRFSRWIPKFDK-LIYEKDNDGNTPLHLFAA 348
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745200|emb|CBI39192.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 111/344 (32%), Positives = 170/344 (49%), Gaps = 58/344 (16%)
Query: 1 MDLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILE 60
MD + + AAS GN + + + T K+ NTILHI + + V+ ILE
Sbjct: 17 MDADLYTAASKGNISKLEQLEACDLGRQRTPKS-NTILHIAAQFGQLD-----CVKRILE 70
Query: 61 KCP-ALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRM 119
+ LL++N KGDTPLHLAA+ GH +V LI+ AK E+E+ + + ++RM
Sbjct: 71 LTSFSSLLKINLKGDTPLHLAAREGHLTVVEALIQAAKPPN----EIESGVGVDKTILRM 126
Query: 120 VNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFR---DSDEKTNILFKFRHLDLFRI--- 173
N E +TALHEAV + + ++ KL + + ++ + H+DL +I
Sbjct: 127 ANKEGDTALHEAVRYHHPEVVKLLIKEDPQFTYGPNISGGTPIHMAVERGHVDLVQIIIE 186
Query: 174 --QTNSIYAAL------------------PKLLEKKKNLIKETDQYGWTP---------- 203
+T+ Y+ + KLLE K +L +E DQ GW+P
Sbjct: 187 NTRTSPAYSGILGRTALHAAVIRNDQEITTKLLEWKPSLTEEVDQNGWSPLHCAAYFGYT 246
Query: 204 ----------IQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNF 253
++S + + K TALHLAA +G V+ ++S P C E VD+ G N
Sbjct: 247 TIVRQLLNKSVKSVAYLGIKPGMQTALHLAAIRGHKDIVDLLLSYYPDCCEQVDDNGKNV 306
Query: 254 LHYAMVSFHVGQLRNLLENNSL-ARSLIDEGDAKGNTPLHVLAA 296
LH+AM+ R L+N+ L R L++E DA+G+TPLH+LA+
Sbjct: 307 LHFAMMRKQDYYPRMFLQNDGLRVRGLLNERDAQGDTPLHLLAS 350
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359478071|ref|XP_002269632.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/344 (32%), Positives = 170/344 (49%), Gaps = 58/344 (16%)
Query: 1 MDLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILE 60
MD + + AAS GN + + + T K+ NTILHI + + V + ILE
Sbjct: 17 MDADLYTAASKGNISKLEQLEACDLGRQRTPKS-NTILHIAAQFGQLDCV-----KRILE 70
Query: 61 KCP-ALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRM 119
+ LL++N KGDTPLHLAA+ GH +V LI+ AK E+E+ + + ++RM
Sbjct: 71 LTSFSSLLKINLKGDTPLHLAAREGHLTVVEALIQAAKPPN----EIESGVGVDKTILRM 126
Query: 120 VNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFR---DSDEKTNILFKFRHLDLFRI--- 173
N E +TALHEAV + + ++ KL + + ++ + H+DL +I
Sbjct: 127 ANKEGDTALHEAVRYHHPEVVKLLIKEDPQFTYGPNISGGTPIHMAVERGHVDLVQIIIE 186
Query: 174 --QTNSIYAAL------------------PKLLEKKKNLIKETDQYGWTP---------- 203
+T+ Y+ + KLLE K +L +E DQ GW+P
Sbjct: 187 NTRTSPAYSGILGRTALHAAVIRNDQEITTKLLEWKPSLTEEVDQNGWSPLHCAAYFGYT 246
Query: 204 ----------IQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNF 253
++S + + K TALHLAA +G V+ ++S P C E VD+ G N
Sbjct: 247 TIVRQLLNKSVKSVAYLGIKPGMQTALHLAAIRGHKDIVDLLLSYYPDCCEQVDDNGKNV 306
Query: 254 LHYAMVSFHVGQLRNLLENNSL-ARSLIDEGDAKGNTPLHVLAA 296
LH+AM+ R L+N+ L R L++E DA+G+TPLH+LA+
Sbjct: 307 LHFAMMRKQDYYPRMFLQNDGLRVRGLLNERDAQGDTPLHLLAS 350
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359478091|ref|XP_002270351.2| PREDICTED: ankyrin-1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 113/361 (31%), Positives = 171/361 (47%), Gaps = 70/361 (19%)
Query: 1 MDLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILE 60
MD ++AA+ G + + M+ D LT KNT+LHI + + V L
Sbjct: 47 MDAALYEAAAYGRIDVLEQMSEDHFVVQLTPN-KNTVLHIAAQFGQLDCVQYILG---LN 102
Query: 61 KCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMV 120
LLL+ N KGDTPLH AA+ GH +V+ LI+ AK R +E+E+ + + ++RM
Sbjct: 103 SSSFLLLRPNLKGDTPLHHAAREGHLTVVKALIDAAK---RLHQEIESGVGGDKAIMRMT 159
Query: 121 NNEKNTALHEAVSHGNVDLFK----------------------------LKKTNNLILIF 152
N E+NTALHEAV + + ++ K + NLI+
Sbjct: 160 NEEENTALHEAVRYHHSEVVKSLTEEDPEFIYGANITGYTLLYMAAERGFEDLVNLIIGT 219
Query: 153 RDSDEKTNILFKFR-HLDLFRIQTNSIYA-----------ALPKLLEKKKNLIKETDQYG 200
S + ++ + H + R YA +LLE K +L KE D+ G
Sbjct: 220 CTSPAHSGMMGRTALHAAVIRNDQGITYADPSLESRFPCEMTARLLEWKPDLTKEVDENG 279
Query: 201 WTPI---------------------QSTSNIADKDRKMTALHLAAGKGDARTVERIISEN 239
W+P+ +S + + KD K TALH+AA + V+R++S +
Sbjct: 280 WSPLHCAAYLGYTAIVEQLLDKSPDKSVTYLGIKDSKKTALHIAANRHHQDIVKRLLSHS 339
Query: 240 PKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSL--ARSLIDEGDAKGNTPLHVLAAV 297
P C E VD++G N LH A++S N+ +NSL LI+E DAKG+TPLH+LA+
Sbjct: 340 PDCCEQVDDKGNNVLHSAIMSERYYAPGNIFRDNSLLWVTGLINEKDAKGDTPLHLLASY 399
Query: 298 R 298
+
Sbjct: 400 Q 400
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510752|ref|XP_003524098.1| PREDICTED: ankyrin-2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 109/345 (31%), Positives = 179/345 (51%), Gaps = 58/345 (16%)
Query: 1 MDLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSEREN-----VSTKFV 55
+D + AA GN + F ++ +E+LLT KNTILHI++ S+ ++ S +FV
Sbjct: 42 IDGALYFAAVEGNFQEFINIHN--LENLLTPN-KNTILHIHLTSTTSKSGKTTPASAQFV 98
Query: 56 EEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQ 115
+IL KC L+L NAKG+T LH+AA++GH +I ++L+E AK + ++EN + A ++
Sbjct: 99 TQILVKCGRLVLLPNAKGETLLHVAARYGHSNIAKLLLEHAK--AKISPDIENGVGADQK 156
Query: 116 MIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILF---KFRHLDLFR 172
IR N+E +TALHEAV + ++++ K + + ++ K L+ + ++L + R
Sbjct: 157 FIRATNDELDTALHEAVRYDHIEVVKTLLEMDPDYSYYANNAKETPLYLASERQNLQVVR 216
Query: 173 I---------------QTNSIYAALPKLLEKKKNLIKE---------TDQYGWTPI---- 204
QT A + + + ++L+K D+ GW P+
Sbjct: 217 EILKKVKSPSYDGPNNQTALHAAVINQDIAMARDLLKNEHVRVAVKLADKKGWVPLHYAV 276
Query: 205 ---------------QSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNR 249
++T+ + D + + TALH+AA R V+ II P C E+VDN+
Sbjct: 277 KTRNAVLTKLLLKEDENTAYMQDNEGR-TALHIAADSDSRRIVKMIIKYYPDCSEIVDNK 335
Query: 250 GWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVL 294
GWN LHYA+ +R ++ N L+ +L +E D GNTPLH L
Sbjct: 336 GWNALHYAVNGGKQNTIRRIMRNLYLS-NLYNEKDVDGNTPLHYL 379
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 303 | ||||||
| TAIR|locus:2128771 | 641 | AT4G03450 "AT4G03450" [Arabido | 0.455 | 0.215 | 0.300 | 5.6e-12 | |
| TAIR|locus:2129685 | 694 | AT4G14390 "AT4G14390" [Arabido | 0.386 | 0.168 | 0.307 | 1e-10 | |
| TAIR|locus:2138391 | 572 | AT4G05040 "AT4G05040" [Arabido | 0.504 | 0.267 | 0.265 | 1.6e-10 | |
| TAIR|locus:2128791 | 683 | AT4G03470 [Arabidopsis thalian | 0.290 | 0.128 | 0.354 | 2.8e-09 | |
| TAIR|locus:2128781 | 677 | AT4G03460 "AT4G03460" [Arabido | 0.273 | 0.122 | 0.313 | 3.8e-09 | |
| TAIR|locus:2157553 | 598 | AT5G54710 "AT5G54710" [Arabido | 0.884 | 0.448 | 0.242 | 1.6e-07 | |
| UNIPROTKB|F1Q2M0 | 1117 | TRPA1 "Uncharacterized protein | 0.244 | 0.066 | 0.341 | 3.1e-07 | |
| UNIPROTKB|F1NSA9 | 954 | MIB2 "E3 ubiquitin-protein lig | 0.396 | 0.125 | 0.282 | 3.3e-07 | |
| UNIPROTKB|Q5ZIJ9 | 954 | MIB2 "E3 ubiquitin-protein lig | 0.396 | 0.125 | 0.282 | 3.3e-07 | |
| TAIR|locus:2026489 | 543 | AT1G07710 "AT1G07710" [Arabido | 0.702 | 0.392 | 0.252 | 5.2e-07 |
| TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 46/153 (30%), Positives = 66/153 (43%)
Query: 1 MDLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNT---ILHINIISSERENVSTKFVEE 57
M+ F A AGN + F D + + L T LH+ E V+
Sbjct: 36 MNPEIFSAMRAGNVK-FLDKMKTNNNTPLACFRNETGDFTLHLAAAWGRLE-----LVKR 89
Query: 58 ILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRG-DEELENRIEAFRQM 116
I+ +CP LLL+ N+K PLH AA G +V + R G EE R+ +
Sbjct: 90 IVSECPCLLLETNSKDQIPLHAAAAAGRLAVVEAFVARVNEISDGLSEEERERVNLYA-- 147
Query: 117 IRMVNNEKNTALHEAVSHGNVDLFK-LKKTNNL 148
M + + NTALH A+ G++ L K N+L
Sbjct: 148 --MKDIDGNTALHLALKGGHLKTAACLVKANHL 178
|
|
| TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 131 (51.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 40/130 (30%), Positives = 69/130 (53%)
Query: 6 FKAASAGNSEPFKDM-ARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
F S GN E + + +R + + + + ++ILH+ + E V+EI+ +CP
Sbjct: 103 FSKISDGNKECLEKLRSRGISVARIKSNTGDSILHLAVTWGHLE-----LVKEIVCECPR 157
Query: 65 LLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKL--AQRGDEELENRIEAFRQMIRMVNN 122
LLL+ N+ G TPLH+AA GH IV + A+ +EE E R+ + +++ +
Sbjct: 158 LLLEQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESE-RMNPY--VLK--DK 212
Query: 123 EKNTALHEAV 132
+ NTAL+ A+
Sbjct: 213 DGNTALYYAI 222
|
|
| TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 44/166 (26%), Positives = 77/166 (46%)
Query: 1 MDLNFFKAASAGNSEPFKDMARDVIESLLTAKAK--NTILHINIISSERENVSTKFVEEI 58
M+ F S G+ E +M + V + K+ +++LH+ E V+ I
Sbjct: 81 MNTEVFSGLSDGDKECL-EMLKGVGTPMACLKSDRGDSVLHLAARWGHLE-----LVKNI 134
Query: 59 LEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKL-AQRGDEELENRIEAFRQMI 117
+ +CP L+L++N K PLH+AA GH IV L+ + R EE R+ + ++
Sbjct: 135 ISECPCLVLELNFKDQLPLHVAAHAGHSAIVEALVASVTFFSDRLAEEDRERLNPY--VL 192
Query: 118 RMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILF 163
R + NTALH A+ +++ N F +++E + L+
Sbjct: 193 R--DKYGNTALHLAIEGRYMEMAASLVNENQNASFLENNEGISSLY 236
|
|
| TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 113 (44.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 33/93 (35%), Positives = 46/93 (49%)
Query: 210 IADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNL 269
+ D D +HLA KG + V+ I P L++ +G N LH A S LR+L
Sbjct: 333 VCDDDGSYP-IHLAVEKGRIKVVKEICKRCPYSKLLLNKKGQNLLHIAAESGKFRILRHL 391
Query: 270 LENNSLARSLIDEGDAKGNTPLHVLAAV--RPK 300
+ + L +E D GNTPLH LA + RP+
Sbjct: 392 TAHEQI-NHLANEKDVDGNTPLH-LATIYWRPR 422
|
|
| TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 109 (43.4 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 210 IADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNL 269
++D D +H+A G + ++ I+ P EL+D N LH A + + L+ +
Sbjct: 345 VSDDDGSFP-IHMAVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVLKFI 403
Query: 270 LE--NNSLARSLIDEGDAKGNTPLHV 293
L + LI+E DA GNTPLH+
Sbjct: 404 LRCCKDKNKEKLINEEDANGNTPLHL 429
|
|
| TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 148 (57.2 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 72/297 (24%), Positives = 127/297 (42%)
Query: 8 AASAGNSEPFKDMARDVIESLL--TAKAKNTILHINIISSERENVSTKFVEEILEKCPAL 65
AA G D + SL+ + ++T+LH ++ E +TK +++ CP+L
Sbjct: 40 AAFTGQQPVIIDKMLEKFPSLVLDVDEEQSTLLH-KAVTQRNEEYATK----VIDLCPSL 94
Query: 66 LLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKN 125
+ N G+TPLHLAA+ G+ +I+ ++E + A+ + + AF ++ +NN N
Sbjct: 95 VSVTNVDGNTPLHLAAEIGNINILWKMLETGE-AECMKINKQGQT-AF--ILACLNNNVN 150
Query: 126 TA--LHEAVSHGN-VDLFKLKKTNNLILIFRDSDEKTNILFKFRHL--DLFRIQTNSIYA 180
+A L E S V+L ++I DS IL KF +L D Q+ ++
Sbjct: 151 SARILVEGTSSMTMVELNAAFSEQQQVII--DS-----ILEKFPNLILDADEEQSTLLHK 203
Query: 181 AXXXXXXXXXXXXXETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240
A + D Q + DKD +T LH A G ++ + + P
Sbjct: 204 ACKSGNLEMARTLLDVDVN-----QEIAEKVDKDG-LTPLHRAVINGSVEILKEFLCKAP 257
Query: 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAV 297
+ + + + + + + ++ R L+ DA+ NT LHV A+V
Sbjct: 258 SSFNITTQGTIETVFHLAAKYQKTKAFIFMAQSANIRQLLYSLDAEDNTVLHVAASV 314
|
|
| UNIPROTKB|F1Q2M0 TRPA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 113 (44.8 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 217 MTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLA 276
MT LHLAA G + V+ ++ + L D+ GW LH+A + + ++ +L+ N
Sbjct: 484 MTPLHLAAKNGHDKVVQLLLKKG--ALFLSDHNGWTALHHASLGGYTQTMKVILDTNLKC 541
Query: 277 RSLIDEGDAKGNTPLHVLA 295
L+DE +GNT LH A
Sbjct: 542 TDLLDE---EGNTALHFAA 557
|
|
| UNIPROTKB|F1NSA9 MIB2 "E3 ubiquitin-protein ligase MIB2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 105 (42.0 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 39/138 (28%), Positives = 67/138 (48%)
Query: 13 NSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAK 72
N++ K V+E LL+ K ++ +I + N + V E+L+K P + N +
Sbjct: 408 NAKESKSTLITVLEKLLSQKTESDHAGCLVIWAALNNAAK--VRELLQKYPDKVDNKN-Q 464
Query: 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELE---------NRIEAFRQMIR----- 118
G T L +A+ GH D+V++L++ DEE + N+ + R ++
Sbjct: 465 GRTALQIASYQGHLDVVKILLQAHATVNLRDEEGDTALHYAAFGNQADVARVLMAKGAGA 524
Query: 119 -MVNNEKNTALHEAVSHG 135
++NN K TAL+ AVS G
Sbjct: 525 DLLNNAKCTALYVAVSQG 542
|
|
| UNIPROTKB|Q5ZIJ9 MIB2 "E3 ubiquitin-protein ligase MIB2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 105 (42.0 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 39/138 (28%), Positives = 67/138 (48%)
Query: 13 NSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAK 72
N++ K V+E LL+ K ++ +I + N + V E+L+K P + N +
Sbjct: 408 NAKESKSTLITVLEKLLSQKTESDHAGCLVIWAALNNAAK--VRELLQKYPDKVDNKN-Q 464
Query: 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELE---------NRIEAFRQMIR----- 118
G T L +A+ GH D+V++L++ DEE + N+ + R ++
Sbjct: 465 GRTALQIASYQGHLDVVKILLQAHATVNLRDEEGDTALHYAAFGNQADVARVLMAKGAGA 524
Query: 119 -MVNNEKNTALHEAVSHG 135
++NN K TAL+ AVS G
Sbjct: 525 DLLNNAKCTALYVAVSQG 542
|
|
| TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 143 (55.4 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 62/246 (25%), Positives = 110/246 (44%)
Query: 65 LLLQVNAK-GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNE 123
++ Q+ K DT LH A + G+ D V ++ + + + EL Q++ N
Sbjct: 18 MMKQLTGKRDDTLLHSAVRHGNKDRVVEILTKTR-----ESELN-------QLLGKQNQS 65
Query: 124 KNTALHEAVSHGNVDLFK-LKKTNNLILI---FRDSDEKTNILFKFRHLDLFRI--QTNS 177
TAL+ A +G+V++ K + +L L+ R+ + +I K LD+ ++ + +S
Sbjct: 66 GETALYVAAEYGDVEIVKEMINCYDLALVEIKARNGFDAFHIAAKQGDLDVLKVLAEAHS 125
Query: 178 IYAAXXXXXXXXXXXXXETDQYGWTPI--------QSTSNIADKDRKMTALHLAAGKGDA 229
A T G T + S + IA + K TALH A+ G
Sbjct: 126 ELAMTVDLSNTTALHTAATQ--GHTEVVNFLLELGSSLAGIAKSNGK-TALHSASRNGHV 182
Query: 230 RTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNT 289
+ ++ +++ P +D +G LH A+ +V + L++ + RS I+ D KGNT
Sbjct: 183 KVIKALLASEPAIAIRMDKKGQTALHMAVKGTNVEVVEELIKAD---RSSINIADTKGNT 239
Query: 290 PLHVLA 295
LH+ A
Sbjct: 240 ALHIAA 245
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 303 | |||
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 6e-11 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 2e-10 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 3e-10 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 6e-09 | |
| pfam12796 | 91 | pfam12796, Ank_2, Ankyrin repeats (3 copies) | 2e-08 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 1e-07 | |
| pfam13637 | 54 | pfam13637, Ank_4, Ankyrin repeats (many copies) | 2e-06 | |
| pfam12796 | 91 | pfam12796, Ank_2, Ankyrin repeats (3 copies) | 6e-06 | |
| PHA02878 | 477 | PHA02878, PHA02878, ankyrin repeat protein; Provis | 2e-05 | |
| pfam00023 | 33 | pfam00023, Ank, Ankyrin repeat | 3e-05 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 1e-04 | |
| pfam13857 | 56 | pfam13857, Ank_5, Ankyrin repeats (many copies) | 2e-04 | |
| pfam13637 | 54 | pfam13637, Ank_4, Ankyrin repeats (many copies) | 6e-04 | |
| COG0666 | 235 | COG0666, Arp, FOG: Ankyrin repeat [General functio | 9e-04 | |
| smart00248 | 30 | smart00248, ANK, ankyrin repeats | 0.002 | |
| pfam13606 | 30 | pfam13606, Ank_3, Ankyrin repeat | 0.002 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 6e-11
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 24/108 (22%)
Query: 35 NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
T LH+ + + V+ +LE A + + G TPLHLAAK GH +IV++L+E
Sbjct: 8 RTPLHLAASNG-----HLEVVKLLLENG-ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61
Query: 95 RAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKL 142
+ + + + NT LH A +GN+D+ KL
Sbjct: 62 KGAD------------------VNARDKDGNTPLHLAARNGNLDVVKL 91
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-10
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 32/128 (25%)
Query: 23 DVIESLLTAKAK--------NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGD 74
+V++ LL A T LH+ + + V+ +LEK A + + G+
Sbjct: 21 EVVKLLLENGADVNAKDNDGRTPLHLAAKNG-----HLEIVKLLLEKG-ADVNARDKDGN 74
Query: 75 TPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSH 134
TPLHLAA+ G+ D+V++L++ + + + T LH A +
Sbjct: 75 TPLHLAARNGNLDVVKLLLKH------------------GADVNARDKDGRTPLHLAAKN 116
Query: 135 GNVDLFKL 142
G++++ KL
Sbjct: 117 GHLEVVKL 124
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-10
Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 58/176 (32%)
Query: 68 QVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTA 127
+ G TPLHLAA GH ++V++L+E + +N+ T
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGA------------------DVNAKDNDGRTP 43
Query: 128 LHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN-------ILFKFRHLDLFRIQTNSIYA 180
LH A +G++++ KL L+ D + + + + +LD+ ++
Sbjct: 44 LHLAAKNGHLEIVKL-----LLEKGADVNARDKDGNTPLHLAARNGNLDVVKL------- 91
Query: 181 ALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERII 236
LL+ + + D+ G TP LHLAA G V+ ++
Sbjct: 92 ----LLKHGAD-VNARDKDGRTP----------------LHLAAKNGHLEVVKLLL 126
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 6e-09
Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 64/175 (36%)
Query: 119 MVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSI 178
+ + T LH A S+G++++ KL
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKL------------------------------------ 25
Query: 179 YAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE 238
LLE ++ N D D T LHLAA G V+ ++ E
Sbjct: 26 ------LLENGADV----------------NAKDNDG-RTPLHLAAKNGHLEIVKLLL-E 61
Query: 239 NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
D G LH A + ++ ++ LL++ + ++ D G TPLH+
Sbjct: 62 KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG----ADVNARDKDGRTPLHL 112
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies) | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-08
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 51 STKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRI 110
+ + V+ +LEK + L DT LHLAA+ G+ +IV++L+E
Sbjct: 9 NLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLE---------------- 49
Query: 111 EAFRQMIRMVNNEKNTALHEAVSHGNVDLFKL 142
+ + + NTALH A +GN+++ KL
Sbjct: 50 --HGADVNAKDKDGNTALHLAARNGNLEIVKL 79
|
Length = 91 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-07
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 209 NIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRN 268
N D+D T LHLAA G V+ ++ DN G LH A + H+ ++
Sbjct: 1 NARDED-GRTPLHLAASNGHLEVVKLLLENGADVNA-KDNDGRTPLHLAAKNGHLEIVKL 58
Query: 269 LLENNSLARSLIDEGDAKGNTPLHVLA 295
LLE + ++ D GNTPLH+ A
Sbjct: 59 LLEKGAD----VNARDKDGNTPLHLAA 81
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies) | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-06
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 18/70 (25%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAV 132
G T LH AA G ++V+ L LE ++ I + + NTALH A
Sbjct: 1 GRTALHKAAISGRLELVKYL-------------LEKGVD-----INRTDEDGNTALHIAA 42
Query: 133 SHGNVDLFKL 142
+GN+++ KL
Sbjct: 43 ENGNLEVLKL 52
|
Length = 54 |
| >gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-06
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 5 FFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA 64
AA GN E K + + + +T LH+ ++ N+ + V+ +LE
Sbjct: 1 LHLAAKNGNLELVKLLLE--KGADVNLGDTDTALHL---AARNGNL--EIVKLLLEHGAD 53
Query: 65 LLLQVNAKGDTPLHLAAKFGHFDIVRVLIER 95
+ + + G+T LHLAA+ G+ +IV++L+E
Sbjct: 54 VNAK-DKDGNTALHLAARNGNLEIVKLLLEH 83
|
Length = 91 |
| >gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 59/232 (25%), Positives = 96/232 (41%), Gaps = 45/232 (19%)
Query: 76 PLHLAAKFGHFDIVRVLIERAKLAQRGDEE---------LENRIEAFRQMIRMVNNEK-- 124
PLH A + + D+V+ L+ R + D E ++MIR +N
Sbjct: 40 PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVF 99
Query: 125 --NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAAL 182
A+ +A ++ NV++FK+ IL R + +T L + + I A +
Sbjct: 100 YTLVAIKDAFNNRNVEIFKI------ILTNRYKNIQTIDLVYIDKKS----KDDIIEAEI 149
Query: 183 PKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKC 242
KLL YG + N+ D+ + TALH A D R E ++S
Sbjct: 150 TKLLL----------SYG-----ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV 194
Query: 243 YELVDNRGWNF-LHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
+ ++ N LH+A+ ++ + LLEN + D D GNTPLH+
Sbjct: 195 N--IPDKTNNSPLHHAVKHYNKPIVHILLENG----ASTDARDKCGNTPLHI 240
|
Length = 477 |
| >gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 3e-05
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 72 KGDTPLHLAAKFGHFDIVRVLIER 95
G+TPLHLAA+ GH ++V++L+E
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEA 24
|
Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 8 AASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLL 67
AA G+ E K + + K NT LH+ + + V+ +L+ A +
Sbjct: 47 AAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNG-----NLDVVKLLLKHG-ADVN 100
Query: 68 QVNAKGDTPLHLAAKFGHFDIVRVLI 93
+ G TPLHLAAK GH ++V++L+
Sbjct: 101 ARDKDGRTPLHLAAKNGHLEVVKLLL 126
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies) | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 2e-04
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 58 ILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIER 95
+LE P L + G+TPLHLAAK+G ++V+ L++
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP 38
|
Length = 56 |
| >gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies) | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 6e-04
Identities = 12/39 (30%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLI 93
V+ +LEK + + + G+T LH+AA+ G+ +++++L+
Sbjct: 17 VKYLLEK-GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
|
Length = 54 |
| >gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.8 bits (92), Expect = 9e-04
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 20/111 (18%)
Query: 34 KNTILHINIISSERENVSTKFVEEILEK--CPALLLQVNAKGDTPLHLAAKFGHFDIVRV 91
+T LH+ ++ + + + +LE + + G+TPLH AA G DIV +
Sbjct: 106 GDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVEL 165
Query: 92 LIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKL 142
L+E + +R N+ TAL A +G ++L KL
Sbjct: 166 LLEAG-------ADPNSR-----------NSYGVTALDPAAKNGRIELVKL 198
|
Length = 235 |
| >gnl|CDD|197603 smart00248, ANK, ankyrin repeats | Back alignment and domain information |
|---|
Score = 35.3 bits (82), Expect = 0.002
Identities = 11/24 (45%), Positives = 20/24 (83%)
Query: 72 KGDTPLHLAAKFGHFDIVRVLIER 95
G TPLHLAA+ G+ ++V++L+++
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDK 24
|
Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30 |
| >gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat | Back alignment and domain information |
|---|
Score = 34.5 bits (80), Expect = 0.002
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 72 KGDTPLHLAAKFGHFDIVRVLIER 95
G+TPLHLAA+ G+ ++V++L+E
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEH 24
|
Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 303 | |||
| PHA02874 | 434 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02946 | 446 | ankyin-like protein; Provisional | 100.0 | |
| PHA03095 | 471 | ankyrin-like protein; Provisional | 100.0 | |
| PHA03100 | 480 | ankyrin repeat protein; Provisional | 100.0 | |
| KOG4412 | 226 | consensus 26S proteasome regulatory complex, subun | 100.0 | |
| PHA02876 | 682 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02876 | 682 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02874 | 434 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02878 | 477 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02716 | 764 | CPXV016; CPX019; EVM010; Provisional | 100.0 | |
| PHA02791 | 284 | ankyrin-like protein; Provisional | 100.0 | |
| PHA03095 | 471 | ankyrin-like protein; Provisional | 100.0 | |
| KOG0510 | 929 | consensus Ankyrin repeat protein [General function | 100.0 | |
| KOG0510 | 929 | consensus Ankyrin repeat protein [General function | 100.0 | |
| PHA02989 | 494 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02716 | 764 | CPXV016; CPX019; EVM010; Provisional | 100.0 | |
| PHA02946 | 446 | ankyin-like protein; Provisional | 100.0 | |
| PHA02917 | 661 | ankyrin-like protein; Provisional | 100.0 | |
| PHA02798 | 489 | ankyrin-like protein; Provisional | 100.0 | |
| PHA02730 | 672 | ankyrin-like protein; Provisional | 100.0 | |
| PHA02791 | 284 | ankyrin-like protein; Provisional | 100.0 | |
| PHA03100 | 480 | ankyrin repeat protein; Provisional | 100.0 | |
| KOG4412 | 226 | consensus 26S proteasome regulatory complex, subun | 100.0 | |
| KOG0509 | 600 | consensus Ankyrin repeat and DHHC-type Zn-finger d | 100.0 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02730 | 672 | ankyrin-like protein; Provisional | 100.0 | |
| KOG4177 | 1143 | consensus Ankyrin [Cell wall/membrane/envelope bio | 100.0 | |
| PHA02989 | 494 | ankyrin repeat protein; Provisional | 100.0 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 100.0 | |
| PHA02878 | 477 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02798 | 489 | ankyrin-like protein; Provisional | 99.98 | |
| PHA02859 | 209 | ankyrin repeat protein; Provisional | 99.97 | |
| KOG4177 | 1143 | consensus Ankyrin [Cell wall/membrane/envelope bio | 99.97 | |
| KOG0509 | 600 | consensus Ankyrin repeat and DHHC-type Zn-finger d | 99.97 | |
| PHA02792 | 631 | ankyrin-like protein; Provisional | 99.97 | |
| PHA02917 | 661 | ankyrin-like protein; Provisional | 99.97 | |
| PHA02859 | 209 | ankyrin repeat protein; Provisional | 99.97 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 99.97 | |
| PHA02795 | 437 | ankyrin-like protein; Provisional | 99.96 | |
| PHA02792 | 631 | ankyrin-like protein; Provisional | 99.95 | |
| TIGR00870 | 743 | trp transient-receptor-potential calcium channel p | 99.95 | |
| PHA02795 | 437 | ankyrin-like protein; Provisional | 99.95 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 99.95 | |
| KOG0502 | 296 | consensus Integral membrane ankyrin-repeat protein | 99.95 | |
| KOG0507 | 854 | consensus CASK-interacting adaptor protein (caskin | 99.94 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 99.94 | |
| KOG0505 | 527 | consensus Myosin phosphatase, regulatory subunit [ | 99.93 | |
| KOG0502 | 296 | consensus Integral membrane ankyrin-repeat protein | 99.93 | |
| KOG0514 | 452 | consensus Ankyrin repeat protein [General function | 99.9 | |
| KOG4369 | 2131 | consensus RTK signaling protein MASK/UNC-44 [Signa | 99.89 | |
| TIGR00870 | 743 | trp transient-receptor-potential calcium channel p | 99.89 | |
| PHA02743 | 166 | Viral ankyrin protein; Provisional | 99.88 | |
| PHA02743 | 166 | Viral ankyrin protein; Provisional | 99.88 | |
| KOG0514 | 452 | consensus Ankyrin repeat protein [General function | 99.88 | |
| KOG0507 | 854 | consensus CASK-interacting adaptor protein (caskin | 99.88 | |
| PHA02741 | 169 | hypothetical protein; Provisional | 99.86 | |
| PHA02741 | 169 | hypothetical protein; Provisional | 99.86 | |
| PHA02884 | 300 | ankyrin repeat protein; Provisional | 99.85 | |
| PHA02736 | 154 | Viral ankyrin protein; Provisional | 99.84 | |
| PHA02736 | 154 | Viral ankyrin protein; Provisional | 99.84 | |
| PHA02884 | 300 | ankyrin repeat protein; Provisional | 99.84 | |
| KOG0505 | 527 | consensus Myosin phosphatase, regulatory subunit [ | 99.83 | |
| KOG0512 | 228 | consensus Fetal globin-inducing factor (contains a | 99.82 | |
| KOG0512 | 228 | consensus Fetal globin-inducing factor (contains a | 99.82 | |
| KOG3676 | 782 | consensus Ca2+-permeable cation channel OSM-9 and | 99.81 | |
| KOG4369 | 2131 | consensus RTK signaling protein MASK/UNC-44 [Signa | 99.79 | |
| PF12796 | 89 | Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 | 99.77 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.76 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.76 | |
| PF12796 | 89 | Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 | 99.75 | |
| KOG3676 | 782 | consensus Ca2+-permeable cation channel OSM-9 and | 99.74 | |
| KOG4214 | 117 | consensus Myotrophin and similar proteins [Transcr | 99.73 | |
| cd00204 | 126 | ANK ankyrin repeats; ankyrin repeats mediate prote | 99.71 | |
| cd00204 | 126 | ANK ankyrin repeats; ankyrin repeats mediate prote | 99.7 | |
| KOG4214 | 117 | consensus Myotrophin and similar proteins [Transcr | 99.67 | |
| PF13857 | 56 | Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A | 99.59 | |
| PF13637 | 54 | Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A | 99.55 | |
| PF13637 | 54 | Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A | 99.55 | |
| COG0666 | 235 | Arp FOG: Ankyrin repeat [General function predicti | 99.55 | |
| PF13857 | 56 | Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A | 99.5 | |
| KOG1710 | 396 | consensus MYND Zn-finger and ankyrin repeat protei | 99.5 | |
| KOG0515 | 752 | consensus p53-interacting protein 53BP/ASPP, conta | 99.49 | |
| PTZ00322 | 664 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas | 99.47 | |
| COG0666 | 235 | Arp FOG: Ankyrin repeat [General function predicti | 99.45 | |
| PTZ00322 | 664 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas | 99.41 | |
| KOG0515 | 752 | consensus p53-interacting protein 53BP/ASPP, conta | 99.34 | |
| KOG1710 | 396 | consensus MYND Zn-finger and ankyrin repeat protei | 99.23 | |
| KOG0506 | 622 | consensus Glutaminase (contains ankyrin repeat) [A | 99.0 | |
| PF13606 | 30 | Ank_3: Ankyrin repeat | 98.99 | |
| KOG0782 | 1004 | consensus Predicted diacylglycerol kinase [Signal | 98.98 | |
| KOG0818 | 669 | consensus GTPase-activating proteins of the GIT fa | 98.93 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 98.9 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 98.89 | |
| KOG0506 | 622 | consensus Glutaminase (contains ankyrin repeat) [A | 98.86 | |
| KOG0818 | 669 | consensus GTPase-activating proteins of the GIT fa | 98.85 | |
| PF00023 | 33 | Ank: Ankyrin repeat Hereditary spherocytosis; Inte | 98.8 | |
| PF13606 | 30 | Ank_3: Ankyrin repeat | 98.77 | |
| PF00023 | 33 | Ank: Ankyrin repeat Hereditary spherocytosis; Inte | 98.73 | |
| KOG0522 | 560 | consensus Ankyrin repeat protein [General function | 98.66 | |
| KOG0782 | 1004 | consensus Predicted diacylglycerol kinase [Signal | 98.61 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 98.6 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 98.46 | |
| KOG0522 | 560 | consensus Ankyrin repeat protein [General function | 98.45 | |
| KOG3609 | 822 | consensus Receptor-activated Ca2+-permeable cation | 98.42 | |
| KOG0521 | 785 | consensus Putative GTPase activating proteins (GAP | 98.33 | |
| KOG3609 | 822 | consensus Receptor-activated Ca2+-permeable cation | 98.26 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 98.2 | |
| KOG0521 | 785 | consensus Putative GTPase activating proteins (GAP | 98.19 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 98.14 | |
| KOG2384 | 223 | consensus Major histocompatibility complex protein | 98.1 | |
| KOG0520 | 975 | consensus Uncharacterized conserved protein, conta | 97.96 | |
| KOG0520 | 975 | consensus Uncharacterized conserved protein, conta | 97.78 | |
| KOG2384 | 223 | consensus Major histocompatibility complex protein | 97.67 | |
| smart00248 | 30 | ANK ankyrin repeats. Ankyrin repeats are about 33 | 97.21 | |
| PF03158 | 192 | DUF249: Multigene family 530 protein; InterPro: IP | 97.1 | |
| smart00248 | 30 | ANK ankyrin repeats. Ankyrin repeats are about 33 | 96.91 | |
| KOG2505 | 591 | consensus Ankyrin repeat protein [General function | 96.84 | |
| KOG2505 | 591 | consensus Ankyrin repeat protein [General function | 96.67 | |
| PF06128 | 284 | Shigella_OspC: Shigella flexneri OspC protein; Int | 96.34 | |
| PF11929 | 76 | DUF3447: Domain of unknown function (DUF3447); Int | 94.74 | |
| PF06128 | 284 | Shigella_OspC: Shigella flexneri OspC protein; Int | 94.62 | |
| PF11929 | 76 | DUF3447: Domain of unknown function (DUF3447); Int | 94.42 | |
| PF03158 | 192 | DUF249: Multigene family 530 protein; InterPro: IP | 91.84 |
| >PHA02874 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=282.21 Aligned_cols=276 Identities=19% Similarity=0.207 Sum_probs=235.6
Q ss_pred CChhHHHHHhcCCChhHHHHHHHHHH-hhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHH
Q 043678 1 MDLNFFKAASAGNSEPFKDMARDVIE-SLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHL 79 (303)
Q Consensus 1 ~~~~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~ 79 (303)
|+..|..|+..|+.+.++.|++.+.. ....+..|.||||.| +..|+.+++++|++ .|++++..+..|.||||+
T Consensus 1 ~~~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A--~~~g~~~iv~~Ll~----~Ga~~n~~~~~~~t~L~~ 74 (434)
T PHA02874 1 ASQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDA--IRSGDAKIVELFIK----HGADINHINTKIPHPLLT 74 (434)
T ss_pred CcHHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHH
Confidence 46789999999999999999987433 335555699999999 99999999999998 899999999999999999
Q ss_pred HHHhCCHHHHHHHHHHhHHhh-----cCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeec
Q 043678 80 AAKFGHFDIVRVLIERAKLAQ-----RGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRD 154 (303)
Q Consensus 80 A~~~~~~~~v~~Ll~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~ 154 (303)
|+..|+.+++++|+++|++.. ....+....+...+..++.++..|.||||+|+..|+.+++++|++.|++++..+
T Consensus 75 A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d 154 (434)
T PHA02874 75 AIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIED 154 (434)
T ss_pred HHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcC
Confidence 999999999999999998653 223456666777778889999999999999999999999999999999999999
Q ss_pred ccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccc-----------------cccCCcc
Q 043678 155 SDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNI-----------------ADKDRKM 217 (303)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~-----------------~~~~~~~ 217 (303)
..|.++++.+..... .++++.|++.+.. ++..+..|.||||.|+.. .....|.
T Consensus 155 ~~g~tpLh~A~~~~~---------~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~ 224 (434)
T PHA02874 155 DNGCYPIHIAIKHNF---------FDIIKLLLEKGAY-ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGF 224 (434)
T ss_pred CCCCCHHHHHHHCCc---------HHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCC
Confidence 999999998875433 6889999998876 778889999999987621 1235799
Q ss_pred cHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhC-CchhhHHHhhcccchhcccccCCCCCCcHHHHHHh
Q 043678 218 TALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSF-HVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAA 296 (303)
Q Consensus 218 t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~-~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~ 296 (303)
||||.|+..+. +.+++|+ .|++ ++.+|..|+||||+|+..+ +.++++.|++ .|++++.+|..|.||||+|++
T Consensus 225 TpL~~A~~~~~-~~i~~Ll-~~~~-in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~----~gad~n~~d~~g~TpL~~A~~ 297 (434)
T PHA02874 225 TPLHNAIIHNR-SAIELLI-NNAS-INDQDIDGSTPLHHAINPPCDIDIIDILLY----HKADISIKDNKGENPIDTAFK 297 (434)
T ss_pred CHHHHHHHCCh-HHHHHHH-cCCC-CCCcCCCCCCHHHHHHhcCCcHHHHHHHHH----CcCCCCCCCCCCCCHHHHHHH
Confidence 99999998765 5667776 5777 5889999999999999876 6777777777 688899999999999999998
Q ss_pred cCC
Q 043678 297 VRP 299 (303)
Q Consensus 297 ~~~ 299 (303)
.++
T Consensus 298 ~~~ 300 (434)
T PHA02874 298 YIN 300 (434)
T ss_pred hCC
Confidence 774
|
|
| >PHA02946 ankyin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=282.54 Aligned_cols=272 Identities=14% Similarity=0.110 Sum_probs=223.5
Q ss_pred hhHHHHHh--cCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 3 LNFFKAAS--AGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 3 ~~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
++||.++. .++.++++.|+++|++++..+..|.||||+| +..|+.+++++|++ .|++++.+|..|.||||+|
T Consensus 39 ~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~A--a~~g~~eiv~lLL~----~GAdin~~d~~g~TpLh~A 112 (446)
T PHA02946 39 HILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIA--SKINNNRIVAMLLT----HGADPNACDKQHKTPLYYL 112 (446)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHH--HHcCCHHHHHHHHH----CcCCCCCCCCCCCCHHHHH
Confidence 57777654 4466899999999998888888899999999 99999999999999 8999999999999999999
Q ss_pred HHhC--CHHHHHHHHHHhHHhhc---------------CchHHHHHHHHhhhhhccccCCCccHHHHHHhcCc--HHHHH
Q 043678 81 AKFG--HFDIVRVLIERAKLAQR---------------GDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGN--VDLFK 141 (303)
Q Consensus 81 ~~~~--~~~~v~~Ll~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~--~~~v~ 141 (303)
+..+ ..+++++|+++|++++. ...++...+...++.++..|..|+||||+|+..++ .++++
T Consensus 113 ~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~ 192 (446)
T PHA02946 113 SGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTIS 192 (446)
T ss_pred HHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHH
Confidence 8876 48899999999988763 12345555666678889999999999999887554 68999
Q ss_pred hHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccc---------
Q 043678 142 LKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIAD--------- 212 (303)
Q Consensus 142 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~--------- 212 (303)
+|++.|++++..+..|.+|++++..... ...++++.|+. + ..++..+..|.||||.++....
T Consensus 193 ~Ll~~Gadin~~d~~G~TpLH~Aa~~~~-------~~~~iv~lLl~-g-adin~~d~~G~TpLh~A~~~~~~~~~~~~Ll 263 (446)
T PHA02946 193 WMMKLGISPSKPDHDGNTPLHIVCSKTV-------KNVDIINLLLP-S-TDVNKQNKFGDSPLTLLIKTLSPAHLINKLL 263 (446)
T ss_pred HHHHcCCCCcccCCCCCCHHHHHHHcCC-------CcHHHHHHHHc-C-CCCCCCCCCCCCHHHHHHHhCChHHHHHHHH
Confidence 9999999999999999999998874320 11466777764 4 4488999999999997653211
Q ss_pred ------------------------------cCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCC
Q 043678 213 ------------------------------KDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFH 262 (303)
Q Consensus 213 ------------------------------~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~ 262 (303)
...|.||||+|+..|+.+++++||++|+ .|+||||+|+..++
T Consensus 264 ~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~--------~~~t~L~~A~~~~~ 335 (446)
T PHA02946 264 STSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI--------ICEDAMYYAVLSEY 335 (446)
T ss_pred hCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC--------ccccHHHHHHHhCH
Confidence 1246699999999999999999999874 36899999999999
Q ss_pred chhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 263 VGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 263 ~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
.++++.|+. .|++++.. ..|.||||+|++.++.++
T Consensus 336 ~~~v~~Ll~----~ga~~n~~-~~G~t~l~~a~~~~~~~~ 370 (446)
T PHA02946 336 ETMVDYLLF----NHFSVDSV-VNGHTCMSECVRLNNPVI 370 (446)
T ss_pred HHHHHHHHH----CCCCCCCc-cccccHHHHHHHcCCHHH
Confidence 888777776 57788885 589999999999998765
|
|
| >PHA03095 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=290.23 Aligned_cols=260 Identities=18% Similarity=0.135 Sum_probs=227.6
Q ss_pred HHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhccc---chhhHHHHHHHHHhCchhhhccccCCCcHHHHHHH
Q 043678 6 FKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSER---ENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82 (303)
Q Consensus 6 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~---~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~ 82 (303)
..++..++.++|++|+++|++.+..+..|.||||+| +..+ +.+++++|++ .|++++.++..|.||||+|+.
T Consensus 19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a--~~~~~~~~~~iv~~Ll~----~Gadin~~~~~g~TpLh~A~~ 92 (471)
T PHA03095 19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLY--LHYSSEKVKDIVRLLLE----AGADVNAPERCGFTPLHLYLY 92 (471)
T ss_pred HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHH--HHhcCCChHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHH
Confidence 356778899999999999998888888899999999 8877 9999999998 899999999999999999999
Q ss_pred hC-CHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHH--hcCcHHHHHhHhhCCcceeeecccccc
Q 043678 83 FG-HFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAV--SHGNVDLFKLKKTNNLILIFRDSDEKT 159 (303)
Q Consensus 83 ~~-~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~--~~~~~~~v~~L~~~~~~~~~~~~~~~~ 159 (303)
.| ..+++++|+++|+++ +.++..|.||||+|+ ..++.+++++|++.|++++..+..|.+
T Consensus 93 ~~~~~~iv~lLl~~ga~i------------------n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~t 154 (471)
T PHA03095 93 NATTLDVIKLLIKAGADV------------------NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMT 154 (471)
T ss_pred cCCcHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCC
Confidence 99 599999999999885 488899999999999 566889999999999999999999999
Q ss_pred hhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccc-------------------cccCCcccHH
Q 043678 160 NILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNI-------------------ADKDRKMTAL 220 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~-------------------~~~~~~~t~L 220 (303)
|++.+.... ....++++.|++.+.+ +...+..|.||+|.++.. ..+..|.|||
T Consensus 155 pL~~a~~~~-------~~~~~iv~~Ll~~g~~-~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpL 226 (471)
T PHA03095 155 PLAVLLKSR-------NANVELLRLLIDAGAD-VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPL 226 (471)
T ss_pred HHHHHHHcC-------CCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 998766443 2235789999999888 444589999999876521 2235799999
Q ss_pred hHHHhcCCH--HHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcC
Q 043678 221 HLAAGKGDA--RTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVR 298 (303)
Q Consensus 221 ~~a~~~~~~--~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~ 298 (303)
|+|+..|+. .+++.|++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..+
T Consensus 227 h~Aa~~~~~~~~~v~~ll~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~----~gad~n~~~~~g~tpl~~A~~~~ 301 (471)
T PHA03095 227 HSMATGSSCKRSLVLPLLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIA----LGADINAVSSDGNTPLSLMVRNN 301 (471)
T ss_pred HHHHhcCCchHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHhC
Confidence 999999875 588999999999 58999999999999999999988888887 58899999999999999999998
Q ss_pred CCCC
Q 043678 299 PKEF 302 (303)
Q Consensus 299 ~~~i 302 (303)
+.++
T Consensus 302 ~~~~ 305 (471)
T PHA03095 302 NGRA 305 (471)
T ss_pred CHHH
Confidence 8754
|
|
| >PHA03100 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=290.32 Aligned_cols=252 Identities=21% Similarity=0.220 Sum_probs=228.9
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhh-----hhhhcccchhhHHHHHHHHHhCchhhhccccCCCcH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHI-----NIISSERENVSTKFVEEILEKCPALLLQVNAKGDTP 76 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~-----A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tp 76 (303)
.||||.|+..|+.++|++|+++|++....+..|.||||+ | +..++.+++++|++ .|++++..+..|.||
T Consensus 36 ~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a--~~~~~~~iv~~Ll~----~ga~i~~~d~~g~tp 109 (480)
T PHA03100 36 VLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKY--NLTDVKEIVKLLLE----YGANVNAPDNNGITP 109 (480)
T ss_pred chhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH--HhhchHHHHHHHHH----CCCCCCCCCCCCCch
Confidence 379999999999999999999999887777779999999 9 99999999999999 899999999999999
Q ss_pred HHHHH--HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcC--cHHHHHhHhhCCcceee
Q 043678 77 LHLAA--KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHG--NVDLFKLKKTNNLILIF 152 (303)
Q Consensus 77 L~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~--~~~~v~~L~~~~~~~~~ 152 (303)
||+|+ ..|+.+++++|+++|++++ ..+..|.||||+|+..+ +.+++++|++.|++++.
T Consensus 110 L~~A~~~~~~~~~iv~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~ 171 (480)
T PHA03100 110 LLYAISKKSNSYSIVEYLLDNGANVN------------------IKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINA 171 (480)
T ss_pred hhHHHhcccChHHHHHHHHHcCCCCC------------------ccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCccc
Confidence 99999 9999999999999998754 78899999999999999 99999999999999999
Q ss_pred ecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCC--HH
Q 043678 153 RDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGD--AR 230 (303)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~--~~ 230 (303)
.+..|.+|++.+..... .++++.|++.+.+ ++..+..|.+|++. .||||.|+..|+ .+
T Consensus 172 ~d~~g~tpL~~A~~~~~---------~~iv~~Ll~~ga~-~~~~~~~~~~~~~~----------~t~l~~a~~~~~~~~~ 231 (480)
T PHA03100 172 KNRYGYTPLHIAVEKGN---------IDVIKFLLDNGAD-INAGDIETLLFTIF----------ETPLHIAACYNEITLE 231 (480)
T ss_pred ccCCCCCHHHHHHHhCC---------HHHHHHHHHcCCC-ccCCCCCCCcHHHH----------HhHHHHHHHhCcCcHH
Confidence 99999999998876553 6899999998877 66667777666544 689999999999 99
Q ss_pred HHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 231 TVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 231 ~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
++++|+++|++ ++.+|..|.||||+|+..++.+++++|++ .|++++.+|..|.|||++|++.++.++
T Consensus 232 iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~----~gad~n~~d~~g~tpl~~A~~~~~~~i 298 (480)
T PHA03100 232 VVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLD----LGANPNLVNKYGDTPLHIAILNNNKEI 298 (480)
T ss_pred HHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCcHHHHHHHhCCHHH
Confidence 99999999999 58999999999999999999999988888 578899999999999999999887654
|
|
| >KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=229.64 Aligned_cols=205 Identities=24% Similarity=0.262 Sum_probs=177.6
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhh--hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESL--LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~--~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
++.+.+|......-++.+++..+.+. .+|.+|+|||||| |+.|+.+++.+|+. ..+..++.+|..|+||||.|
T Consensus 5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa--~S~g~~eiv~fLls---q~nv~~ddkDdaGWtPlhia 79 (226)
T KOG4412|consen 5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWA--CSFGHVEIVYFLLS---QPNVKPDDKDDAGWTPLHIA 79 (226)
T ss_pred chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeee--eecCchhHHHHHHh---cCCCCCCCccccCCchhhhh
Confidence 45667777777788888888866443 5565799999999 99999999999996 37888999999999999999
Q ss_pred HHhCCHHHHHHHHHH-hHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccc
Q 043678 81 AKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKT 159 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~ 159 (303)
+..|+-++|+.|+.+ |++ +|..+..|.|+||||+..|..+++++|++.|+.+
T Consensus 80 ~s~g~~evVk~Ll~r~~ad------------------vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i--------- 132 (226)
T KOG4412|consen 80 ASNGNDEVVKELLNRSGAD------------------VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI--------- 132 (226)
T ss_pred hhcCcHHHHHHHhcCCCCC------------------cceecCCCcceehhhhcCChhhHHHHHHhcCCCC---------
Confidence 999999999999998 766 5599999999999999999999999988887753
Q ss_pred hhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcC
Q 043678 160 NILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISEN 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g 239 (303)
...|..| .||||.|+.-|+.+++++|+..|
T Consensus 133 ----------------------------------~~kD~~~----------------qtplHRAAavGklkvie~Li~~~ 162 (226)
T KOG4412|consen 133 ----------------------------------RIKDKQG----------------QTPLHRAAAVGKLKVIEYLISQG 162 (226)
T ss_pred ----------------------------------ccccccc----------------CchhHHHHhccchhhHHHHHhcC
Confidence 3444444 46699999999999999999999
Q ss_pred CcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHH
Q 043678 240 PKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLA 295 (303)
Q Consensus 240 ~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~ 295 (303)
+. +|.+|+.|+||||.|.-.++.++...|++ .|++++..|+.| ||+..|+
T Consensus 163 a~-~n~qDk~G~TpL~~al~e~~~d~a~lLV~----~gAd~~~edke~-t~~~~a~ 212 (226)
T KOG4412|consen 163 AP-LNTQDKYGFTPLHHALAEGHPDVAVLLVR----AGADTDREDKEG-TALRIAC 212 (226)
T ss_pred CC-CCcccccCccHHHHHHhccCchHHHHHHH----hccceeeccccC-chHHHHH
Confidence 88 69999999999999988899998888888 578899999999 9988764
|
|
| >PHA02876 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=286.68 Aligned_cols=276 Identities=13% Similarity=0.112 Sum_probs=197.5
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~ 82 (303)
++|+.|+..|+.+++++|++.|++.+..+..|.||||+| +..|+.+++++|++ .|++++..+..|.||||+|+.
T Consensus 147 ~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~A--a~~G~~~iv~~LL~----~Gad~n~~~~~g~t~L~~A~~ 220 (682)
T PHA02876 147 KLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYA--AERGNAKMVNLLLS----YGADVNIIALDDLSVLECAVD 220 (682)
T ss_pred HHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHH--HHCCCHHHHHHHHH----CCCCcCccCCCCCCHHHHHHH
Confidence 578899999999999999999998888888899999999 99999999999999 899999999999999999999
Q ss_pred hCCHHHHHHHHHHhHHhhcCch-----------HHHHHHHHhhhhhccccCCCccHHHHHHhcCcH-HHHHhHhhCCcce
Q 043678 83 FGHFDIVRVLIERAKLAQRGDE-----------ELENRIEAFRQMIRMVNNEKNTALHEAVSHGNV-DLFKLKKTNNLIL 150 (303)
Q Consensus 83 ~~~~~~v~~Ll~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~-~~v~~L~~~~~~~ 150 (303)
.++.+++++|++.+.+....+. +....+...+..++..+..|.||||+|+..++. +++++|++.|+++
T Consensus 221 ~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi 300 (682)
T PHA02876 221 SKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV 300 (682)
T ss_pred cCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence 9999999999998766543332 333444455667788888999999999999986 5888899999999
Q ss_pred eeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccc------------------cc
Q 043678 151 IFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNI------------------AD 212 (303)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~------------------~~ 212 (303)
+..+..|.++++.+..... ..+.++.|+..+.+ ++..+..|.||||+++.. ..
T Consensus 301 n~~d~~g~TpLh~Aa~~g~--------~~~~v~~Ll~~gad-in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~ 371 (682)
T PHA02876 301 NAKNIKGETPLYLMAKNGY--------DTENIRTLIMLGAD-VNAADRLYITPLHQASTLDRNKDIVITLLELGANVNAR 371 (682)
T ss_pred CCcCCCCCCHHHHHHHhCC--------CHHHHHHHHHcCCC-CCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccC
Confidence 9999999999988765431 12445555555444 555556666666655421 11
Q ss_pred cCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCc-hhhHHHhhcccchhcccccCCCCCCcHH
Q 043678 213 KDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHV-GQLRNLLENNSLARSLIDEGDAKGNTPL 291 (303)
Q Consensus 213 ~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~-~~~~~ll~~~~~~~~~~~~~d~~g~tpL 291 (303)
+..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..++. .+++.|++ .|++++.+|..|+|||
T Consensus 372 d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~----~gadin~~d~~G~TpL 446 (682)
T PHA02876 372 DYCDKTPIHYAAVRNNVVIINTLLDYGAD-IEALSQKIGTALHFALCGTNPYMSVKTLID----RGANVNSKNKDLSTPL 446 (682)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHHcCCHHHHHHHHHh----CCCCCCcCCCCCChHH
Confidence 23456666666666666666666666655 345555555555555544432 22333333 3455555555555555
Q ss_pred HHHHhcC
Q 043678 292 HVLAAVR 298 (303)
Q Consensus 292 ~~A~~~~ 298 (303)
|+|++.+
T Consensus 447 h~Aa~~~ 453 (682)
T PHA02876 447 HYACKKN 453 (682)
T ss_pred HHHHHhC
Confidence 5555543
|
|
| >PHA02876 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=282.57 Aligned_cols=263 Identities=18% Similarity=0.120 Sum_probs=223.1
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHH------------------------
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEE------------------------ 57 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~------------------------ 57 (303)
.||||.|+..|+.++|++|+++|++....+..|.||||+| +..++.+++++|++
T Consensus 179 ~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A--~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~ 256 (682)
T PHA02876 179 ITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECA--VDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETS 256 (682)
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHH--HHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHH
Confidence 4899999999999999999999998877777799999999 99999999888764
Q ss_pred -HHHhCchhhhccccCCCcHHHHHHHhCCH-HHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcC
Q 043678 58 -ILEKCPALLLQVNAKGDTPLHLAAKFGHF-DIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHG 135 (303)
Q Consensus 58 -~~~~~~~~~~~~~~~g~tpL~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~ 135 (303)
++...|.+++..+..|.||||+|+..++. +++++|++.|+++ +..|..|.||||+|+..|
T Consensus 257 ~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi------------------n~~d~~g~TpLh~Aa~~g 318 (682)
T PHA02876 257 LLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV------------------NAKNIKGETPLYLMAKNG 318 (682)
T ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC------------------CCcCCCCCCHHHHHHHhC
Confidence 23345667888888999999999999986 6899999998875 478899999999999999
Q ss_pred -cHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccc----
Q 043678 136 -NVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNI---- 210 (303)
Q Consensus 136 -~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~---- 210 (303)
..+++++|+..|++++..+..|.++++++..... ..++++.|+..+.+ ++..+..|.||||+|+..
T Consensus 319 ~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~--------~~~iv~lLl~~gad-in~~d~~G~TpLh~Aa~~~~~~ 389 (682)
T PHA02876 319 YDTENIRTLIMLGADVNAADRLYITPLHQASTLDR--------NKDIVITLLELGAN-VNARDYCDKTPIHYAAVRNNVV 389 (682)
T ss_pred CCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCC--------cHHHHHHHHHcCCC-CccCCCCCCCHHHHHHHcCCHH
Confidence 5899999999999999999999999988764221 24567777777666 888999999999988632
Q ss_pred -------------cccCCcccHHhHHHhcCC-HHHHHHHhhcCCcccccccCCCChHHHHHHHhC-CchhhHHHhhcccc
Q 043678 211 -------------ADKDRKMTALHLAAGKGD-ARTVERIISENPKCYELVDNRGWNFLHYAMVSF-HVGQLRNLLENNSL 275 (303)
Q Consensus 211 -------------~~~~~~~t~L~~a~~~~~-~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~-~~~~~~~ll~~~~~ 275 (303)
.....|.||||+|+..++ ..++++|+++|++ ++.+|..|+||||+|+..+ +.++++.|++
T Consensus 390 iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gad-in~~d~~G~TpLh~Aa~~~~~~~iv~lLl~---- 464 (682)
T PHA02876 390 IINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGAN-VNSKNKDLSTPLHYACKKNCKLDVIEMLLD---- 464 (682)
T ss_pred HHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCC-CCcCCCCCChHHHHHHHhCCcHHHHHHHHH----
Confidence 123478899999997665 4678999999999 5999999999999999977 6788888877
Q ss_pred hhcccccCCCCCCcHHHHHHhcC
Q 043678 276 ARSLIDEGDAKGNTPLHVLAAVR 298 (303)
Q Consensus 276 ~~~~~~~~d~~g~tpL~~A~~~~ 298 (303)
.|++++.+|..|.|||++|+..+
T Consensus 465 ~Gad~n~~d~~g~tpl~~a~~~~ 487 (682)
T PHA02876 465 NGADVNAINIQNQYPLLIALEYH 487 (682)
T ss_pred CCCCCCCCCCCCCCHHHHHHHhC
Confidence 58889999999999999998754
|
|
| >PHA02874 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=268.22 Aligned_cols=263 Identities=17% Similarity=0.198 Sum_probs=220.6
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHH-------------------HHhC
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEI-------------------LEKC 62 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~-------------------~~~~ 62 (303)
.|||+.|+..|+.++|++|++.|++....+..|.||||+| +..|+.+++++|++. +...
T Consensus 36 ~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A--~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~ 113 (434)
T PHA02874 36 TTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTA--IKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDC 113 (434)
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHC
Confidence 4899999999999999999999998877777799999999 999999999999862 2234
Q ss_pred chhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHh
Q 043678 63 PALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKL 142 (303)
Q Consensus 63 ~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~ 142 (303)
|.+++.++..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..++.+++++
T Consensus 114 g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n------------------~~d~~g~tpLh~A~~~~~~~iv~~ 175 (434)
T PHA02874 114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN------------------IEDDNGCYPIHIAIKHNFFDIIKL 175 (434)
T ss_pred cCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC------------------CcCCCCCCHHHHHHHCCcHHHHHH
Confidence 56778889999999999999999999999999998754 788999999999999999999999
Q ss_pred HhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccc------------
Q 043678 143 KKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNI------------ 210 (303)
Q Consensus 143 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~------------ 210 (303)
|++.|+++...+..|.++++.+..... .+++++|++.+.+ ++..+..|.||||.++..
T Consensus 176 Ll~~g~~~n~~~~~g~tpL~~A~~~g~---------~~iv~~Ll~~g~~-i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~ 245 (434)
T PHA02874 176 LLEKGAYANVKDNNGESPLHNAAEYGD---------YACIKLLIDHGNH-IMNKCKNGFTPLHNAIIHNRSAIELLINNA 245 (434)
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHCChHHHHHHHcCC
Confidence 999999999999999999998875543 6899999999887 677888999999987521
Q ss_pred ---cccCCcccHHhHHHhcC-CHHHHHHHhhcCCcccccccCCCChHHHHHHHhC-CchhhHHHhhcccchhcccccCCC
Q 043678 211 ---ADKDRKMTALHLAAGKG-DARTVERIISENPKCYELVDNRGWNFLHYAMVSF-HVGQLRNLLENNSLARSLIDEGDA 285 (303)
Q Consensus 211 ---~~~~~~~t~L~~a~~~~-~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~-~~~~~~~ll~~~~~~~~~~~~~d~ 285 (303)
.....|.||||+|+..+ +.+++++|+++|++ ++.+|..|.||||+|++++ ..++++.++... +.++..+.
T Consensus 246 ~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad-~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~----~~~~~~~~ 320 (434)
T PHA02874 246 SINDQDIDGSTPLHHAINPPCDIDIIDILLYHKAD-ISIKDNKGENPIDTAFKYINKDPVIKDIIANA----VLIKEADK 320 (434)
T ss_pred CCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHhCCccHHHHHHHHhc----Cchhhccc
Confidence 22357999999999876 78999999999999 5999999999999999987 666777777653 33433343
Q ss_pred CC-CcHHHHHHhcCC
Q 043678 286 KG-NTPLHVLAAVRP 299 (303)
Q Consensus 286 ~g-~tpL~~A~~~~~ 299 (303)
.+ .+++..+....+
T Consensus 321 ~~~~~~~~~~~i~~~ 335 (434)
T PHA02874 321 LKDSDFLEHIEIKDN 335 (434)
T ss_pred cchhHHHHHHHHhcc
Confidence 33 455665544433
|
|
| >PHA02878 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=269.63 Aligned_cols=255 Identities=18% Similarity=0.160 Sum_probs=214.0
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~ 82 (303)
+|||.|+..|+.++|++|+++|++.+..+..|.||||+| +..|+.+++++|++. +...+. ..+.+|++.|+.
T Consensus 39 tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A--~~~g~~~~v~~Ll~~----~~~~~~--~~~~~~l~~a~~ 110 (477)
T PHA02878 39 IPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHII--CKEPNKLGMKEMIRS----INKCSV--FYTLVAIKDAFN 110 (477)
T ss_pred chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHCccHhHHHHHHHH----Hhcccc--ccchhhHHHHHH
Confidence 699999999999999999999998888888899999999 999999999999984 222222 467899999999
Q ss_pred hCCHHHHHHHHHHhHHhhc---------------CchHHHHHHHHhhhhhccccCC-CccHHHHHHhcCcHHHHHhHhhC
Q 043678 83 FGHFDIVRVLIERAKLAQR---------------GDEELENRIEAFRQMIRMVNNE-KNTALHEAVSHGNVDLFKLKKTN 146 (303)
Q Consensus 83 ~~~~~~v~~Ll~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~-~~t~l~~A~~~~~~~~v~~L~~~ 146 (303)
.++.+++++|+..+..... ...++.+.+...++.++..+.. |.||||+|+..|+.+++++|++.
T Consensus 111 ~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~ 190 (477)
T PHA02878 111 NRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSY 190 (477)
T ss_pred cCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHC
Confidence 9999999999987432110 1123666677778889999998 99999999999999999999999
Q ss_pred CcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhc
Q 043678 147 NLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGK 226 (303)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~ 226 (303)
|++++..+..|.++++.+..... .++++.|++.+.+ ++..+..|. ||||+|+..
T Consensus 191 gad~n~~d~~g~tpLh~A~~~~~---------~~iv~~Ll~~ga~-in~~d~~g~----------------TpLh~A~~~ 244 (477)
T PHA02878 191 GANVNIPDKTNNSPLHHAVKHYN---------KPIVHILLENGAS-TDARDKCGN----------------TPLHISVGY 244 (477)
T ss_pred CCCCCCcCCCCCCHHHHHHHhCC---------HHHHHHHHHcCCC-CCCCCCCCC----------------CHHHHHHHh
Confidence 99999999999999998875433 5889999988876 666666554 559999975
Q ss_pred -CCHHHHHHHhhcCCcccccccC-CCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcC
Q 043678 227 -GDARTVERIISENPKCYELVDN-RGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVR 298 (303)
Q Consensus 227 -~~~~~v~~Ll~~g~~~~~~~~~-~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~ 298 (303)
++.+++++|+++|+++ +.++. .|.||||+| .++.++++.|++ .|++++..|..|+||||+|++.+
T Consensus 245 ~~~~~iv~~Ll~~gadv-n~~~~~~g~TpLh~A--~~~~~~v~~Ll~----~gadin~~d~~g~TpL~~A~~~~ 311 (477)
T PHA02878 245 CKDYDILKLLLEHGVDV-NAKSYILGLTALHSS--IKSERKLKLLLE----YGADINSLNSYKLTPLSSAVKQY 311 (477)
T ss_pred cCCHHHHHHHHHcCCCC-CccCCCCCCCHHHHH--ccCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHHc
Confidence 7899999999999995 77765 799999999 467777777776 68899999999999999999754
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=263.89 Aligned_cols=242 Identities=17% Similarity=0.183 Sum_probs=211.7
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
+++|+.|+..|+.+++++|++.|+++...+..|.||||+| +..|+.+++++|++ .|++++..+..+.||||+|+
T Consensus 3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A--~~~~~~~~v~~Ll~----~ga~~~~~~~~~~t~L~~A~ 76 (413)
T PHA02875 3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLA--MKFRDSEAIKLLMK----HGAIPDVKYPDIESELHDAV 76 (413)
T ss_pred chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHH--HHcCCHHHHHHHHh----CCCCccccCCCcccHHHHHH
Confidence 5789999999999999999999998887777799999999 99999999999999 79988888899999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|++.|+... +..+..|.||||+|+..|+.+++++|++.|+++...+..|.+++
T Consensus 77 ~~g~~~~v~~Ll~~~~~~~-----------------~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpL 139 (413)
T PHA02875 77 EEGDVKAVEELLDLGKFAD-----------------DVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPL 139 (413)
T ss_pred HCCCHHHHHHHHHcCCccc-----------------ccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHH
Confidence 9999999999999987542 24567799999999999999999999999999999999999999
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
+.+....+ .++++.|++.+.+ ++..+..| .||||+|+..|+.+++++|+++|++
T Consensus 140 h~A~~~~~---------~~~v~~Ll~~g~~-~~~~d~~g----------------~TpL~~A~~~g~~eiv~~Ll~~ga~ 193 (413)
T PHA02875 140 HLAVMMGD---------IKGIELLIDHKAC-LDIEDCCG----------------CTPLIIAMAKGDIAICKMLLDSGAN 193 (413)
T ss_pred HHHHHcCC---------HHHHHHHHhcCCC-CCCCCCCC----------------CCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 98876554 5889999988776 55555544 5669999999999999999999999
Q ss_pred ccccccCCC-ChHHHHHHHhCCchhhHHHhhcccchhcccccC---CCCCCcHHHHHHhc
Q 043678 242 CYELVDNRG-WNFLHYAMVSFHVGQLRNLLENNSLARSLIDEG---DAKGNTPLHVLAAV 297 (303)
Q Consensus 242 ~~~~~~~~g-~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~---d~~g~tpL~~A~~~ 297 (303)
+ +..+..| .||+|+|+..++.+++++|++. |++++.. +..|.||+++++..
T Consensus 194 ~-n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~----gad~n~~~~~~~~~~t~l~~~~~~ 248 (413)
T PHA02875 194 I-DYFGKNGCVAALCYAIENNKIDIVRLFIKR----GADCNIMFMIEGEECTILDMICNM 248 (413)
T ss_pred C-CcCCCCCCchHHHHHHHcCCHHHHHHHHHC----CcCcchHhhcCCCchHHHHHHHhh
Confidence 5 7777776 5899999999999999999885 6666654 67899999987643
|
|
| >PHA02716 CPXV016; CPX019; EVM010; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=272.25 Aligned_cols=287 Identities=16% Similarity=0.092 Sum_probs=212.3
Q ss_pred ChhHHHHHhc--CCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccc--hhhHHHHHHHHHhCchhhhccccCCCcHH
Q 043678 2 DLNFFKAASA--GNSEPFKDMARDVIESLLTAKAKNTILHINIISSERE--NVSTKFVEEILEKCPALLLQVNAKGDTPL 77 (303)
Q Consensus 2 ~~~L~~A~~~--g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~--~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL 77 (303)
.||||.|+.. ++.+++++|+++|++.+..+..|.||||+| +..|+ .+++++|++ .|++++.++..|.|||
T Consensus 178 ~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~A--a~~g~~~~eIVklLLe----~GADVN~kD~~G~TPL 251 (764)
T PHA02716 178 YGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTY--LITGNVCASVIKKIIE----LGGDMDMKCVNGMSPI 251 (764)
T ss_pred CcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCCCHHHHHHHHH----cCCCCCCCCCCCCCHH
Confidence 4789987654 578999999999988888888899999999 88885 488999998 7999999999999999
Q ss_pred HHHH---HhCCHHHHHHHHHHhHHh----------------hcCchHHHHHHHHhhhhhccccCCCccHHHHHHh--cCc
Q 043678 78 HLAA---KFGHFDIVRVLIERAKLA----------------QRGDEELENRIEAFRQMIRMVNNEKNTALHEAVS--HGN 136 (303)
Q Consensus 78 ~~A~---~~~~~~~v~~Ll~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~--~~~ 136 (303)
|+|+ ..++.++++.|++.+... ..++.++.+.+...++.++.+|..|+||||+|+. .++
T Consensus 252 h~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~ 331 (764)
T PHA02716 252 MTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNIS 331 (764)
T ss_pred HHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCC
Confidence 9875 456788888887653211 1133455566666778889999999999999864 467
Q ss_pred HHHHHhHhhCCcceeeecccccchhhhhhccchhHH-----hhhhhHHHHHHHHHHhccchhchhhhcCCCcccccc---
Q 043678 137 VDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFR-----IQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTS--- 208 (303)
Q Consensus 137 ~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~--- 208 (303)
.+++++|++.|++++..+..|.+|++.+........ .......++++.|++++.+ ++..+..|.||||.++
T Consensus 332 ~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD-In~kn~~G~TPLh~y~~~a 410 (764)
T PHA02716 332 TDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD-ITAVNCLGYTPLTSYICTA 410 (764)
T ss_pred chHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC-CCCcCCCCCChHHHHHHHH
Confidence 899999999999999999999999997653211000 0012346899999998877 8899999999998321
Q ss_pred -cc----------c-------c--------cCCcccH--HhHHHhcCCHH------------------HHHHHhhcCCcc
Q 043678 209 -NI----------A-------D--------KDRKMTA--LHLAAGKGDAR------------------TVERIISENPKC 242 (303)
Q Consensus 209 -~~----------~-------~--------~~~~~t~--L~~a~~~~~~~------------------~v~~Ll~~g~~~ 242 (303)
.. . . ...+.+| +|.++..+..+ ++..++..+.+
T Consensus 411 ~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~n- 489 (764)
T PHA02716 411 QNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYN- 489 (764)
T ss_pred HhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhcc-
Confidence 00 0 0 0122233 44444443322 22333444555
Q ss_pred cccccCCCChHHHHHHHhCCchhh-----HHHhhcccchhcccccCCCCCCcHHHHHHhcCCC
Q 043678 243 YELVDNRGWNFLHYAMVSFHVGQL-----RNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPK 300 (303)
Q Consensus 243 ~~~~~~~g~tpl~~A~~~~~~~~~-----~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~ 300 (303)
.+..|..|+||||+|+..|+.+++ ++|++ .|++++.+|.+|+||||+|+++|+.
T Consensus 490 vN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~----~GADIN~~d~~G~TPLh~A~~~g~~ 548 (764)
T PHA02716 490 NAVCETSGMTPLHVSIISHTNANIVMDSFVYLLS----IQYNINIPTKNGVTPLMLTMRNNRL 548 (764)
T ss_pred ccccCCCCCCHHHHHHHcCCccchhHHHHHHHHh----CCCCCcccCCCCCCHHHHHHHcCCc
Confidence 477889999999999999887544 66665 6889999999999999999999876
|
|
| >PHA02791 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=247.04 Aligned_cols=224 Identities=16% Similarity=0.108 Sum_probs=188.6
Q ss_pred hcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHH
Q 043678 10 SAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIV 89 (303)
Q Consensus 10 ~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v 89 (303)
..++.+++++|+++|++ ..|..|.||||+| +..|+.+++++|++ .|++++.. +|.||||+|+..|+.+++
T Consensus 8 ~~~~~~~~~~Lis~~a~--~~D~~G~TpLh~A--a~~g~~eiv~~Ll~----~ga~~n~~--d~~TpLh~Aa~~g~~eiV 77 (284)
T PHA02791 8 TWKSKQLKSFLSSKDAF--KADVHGHSALYYA--IADNNVRLVCTLLN----AGALKNLL--ENEFPLHQAATLEDTKIV 77 (284)
T ss_pred ccCHHHHHHHHHhCCCC--CCCCCCCcHHHHH--HHcCCHHHHHHHHH----CcCCCcCC--CCCCHHHHHHHCCCHHHH
Confidence 45788999999998874 5677799999999 99999999999998 78777765 478999999999999999
Q ss_pred HHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeeccccc-chhhhhhccc
Q 043678 90 RVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEK-TNILFKFRHL 168 (303)
Q Consensus 90 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~-~~~~~~~~~~ 168 (303)
++|++.|++++ .+|..|+||||+|+..|+.+++++|++.|+++...+..|. ++++.+....
T Consensus 78 ~lLL~~Gadvn------------------~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g 139 (284)
T PHA02791 78 KILLFSGMDDS------------------QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN 139 (284)
T ss_pred HHHHHCCCCCC------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcC
Confidence 99999988744 7889999999999999999999999999999888888774 6777665433
Q ss_pred hhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccC
Q 043678 169 DLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDN 248 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~ 248 (303)
. .++++.|+++++... +. ..|.||||+|++.|+.+++++|+++|++ ++.+|.
T Consensus 140 ~---------~eivk~LL~~~~~~~---d~---------------~~g~TpLh~Aa~~g~~eiv~lLL~~gAd-~n~~d~ 191 (284)
T PHA02791 140 D---------VSIVSYFLSEIPSTF---DL---------------AILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNS 191 (284)
T ss_pred C---------HHHHHHHHhcCCccc---cc---------------ccCccHHHHHHHcCCHHHHHHHHHCCCC-CCcccC
Confidence 2 578889988754321 11 1356889999999999999999999999 588999
Q ss_pred CCChH-HHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHH
Q 043678 249 RGWNF-LHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVL 294 (303)
Q Consensus 249 ~g~tp-l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A 294 (303)
.|.|| ||+|+..|+.+++++|++ +|++++.+|..| +||..|
T Consensus 192 ~g~t~~L~~Aa~~~~~e~v~lLl~----~Ga~in~~~~~~-~~l~~~ 233 (284)
T PHA02791 192 LLFIPDIKLAIDNKDLEMLQALFK----YDINIYSVNLEN-VLLDDA 233 (284)
T ss_pred CCCChHHHHHHHcCCHHHHHHHHH----CCCCCccCcccC-ccCCCH
Confidence 99987 999999999999998888 588899999955 777544
|
|
| >PHA03095 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=262.95 Aligned_cols=239 Identities=17% Similarity=0.137 Sum_probs=210.6
Q ss_pred ChhHHHHHhcC---CChhHHHHHHHHHHhhhhcccCCchhhhhhhhccc-chhhHHHHHHHHHhCchhhhccccCCCcHH
Q 043678 2 DLNFFKAASAG---NSEPFKDMARDVIESLLTAKAKNTILHINIISSER-ENVSTKFVEEILEKCPALLLQVNAKGDTPL 77 (303)
Q Consensus 2 ~~~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL 77 (303)
.||||.|+..| +.++++.|++.|++.+..+..|.||||+| +..| ..+++++|++ .|++++.++..|.|||
T Consensus 48 ~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A--~~~~~~~~iv~lLl~----~ga~in~~~~~g~tpL 121 (471)
T PHA03095 48 KTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLY--LYNATTLDVIKLLIK----AGADVNAKDKVGRTPL 121 (471)
T ss_pred CCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCcHHHHHHHHH----cCCCCCCCCCCCCCHH
Confidence 58999999999 99999999999999888887899999999 9999 5999999999 8999999999999999
Q ss_pred HHHH--HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcC--cHHHHHhHhhCCcceeee
Q 043678 78 HLAA--KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHG--NVDLFKLKKTNNLILIFR 153 (303)
Q Consensus 78 ~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~--~~~~v~~L~~~~~~~~~~ 153 (303)
|+|+ ..++.+++++|++.|++++ ..|..|.||||+|+..+ +.+++++|++.|+++...
T Consensus 122 h~a~~~~~~~~~iv~~Ll~~gad~~------------------~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~ 183 (471)
T PHA03095 122 HVYLSGFNINPKVIRLLLRKGADVN------------------ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV 183 (471)
T ss_pred HHHhhCCcCCHHHHHHHHHcCCCCC------------------ccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCccc
Confidence 9999 5568999999999998854 78899999999998866 578999999999999888
Q ss_pred cccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccc-------------------cccC
Q 043678 154 DSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNI-------------------ADKD 214 (303)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~-------------------~~~~ 214 (303)
+..|.++++.+.... ....++++.|++.+.+ ++..+..|.||||+++.. ..+.
T Consensus 184 d~~g~t~Lh~~~~~~-------~~~~~i~~~Ll~~g~~-~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~ 255 (471)
T PHA03095 184 DDRFRSLLHHHLQSF-------KPRARIVRELIRAGCD-PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNR 255 (471)
T ss_pred CCCCCCHHHHHHHHC-------CCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCC
Confidence 889999988765321 1225778888888877 889999999999987632 1235
Q ss_pred CcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcc
Q 043678 215 RKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273 (303)
Q Consensus 215 ~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~ 273 (303)
.|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.++++.|++..
T Consensus 256 ~g~TpLh~A~~~~~~~~v~~LL~~gad-~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~ 313 (471)
T PHA03095 256 YGQTPLHYAAVFNNPRACRRLIALGAD-INAVSSDGNTPLSLMVRNNNGRAVRAALAKN 313 (471)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCCHHHHHHHHHhC
Confidence 799999999999999999999999999 5899999999999999999999999998864
|
|
| >KOG0510 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=255.83 Aligned_cols=263 Identities=23% Similarity=0.299 Sum_probs=216.7
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.+|||.|+.....+.|+.|++.|++....+..+.+|+|+| +..|..++++.|++ .+++++..|..|.||||.||
T Consensus 89 n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A--~~~~~~s~L~~Ll~----~~~dvnl~de~~~TpLh~A~ 162 (929)
T KOG0510|consen 89 NTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLA--ADSGNYSCLKLLLD----YGADVNLEDENGFTPLHLAA 162 (929)
T ss_pred CchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhc--cccchHHHHHHHHH----hcCCccccccCCCchhhHHH
Confidence 4689999999999999999999988777777799999999 99999999999999 68999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhh-----CCcceeeeccc
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKT-----NNLILIFRDSD 156 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~-----~~~~~~~~~~~ 156 (303)
..++.+..+.|++.|+++. ..|.+|.+|+|.|++.|..++.+.++. ++..+++.+..
T Consensus 163 ~~~~~E~~k~Li~~~a~~~------------------K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~ 224 (929)
T KOG0510|consen 163 RKNKVEAKKELINKGADPC------------------KSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNE 224 (929)
T ss_pred hcChHHHHHHHHhcCCCCC------------------cccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCC
Confidence 9999998899999998865 678889999999999999999888665 56668888888
Q ss_pred ccchhhhhhccchhHHhhhhhHHHHHHHHHHhcc--------------chhchhhhcCCCcccccccc------------
Q 043678 157 EKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKK--------------NLIKETDQYGWTPIQSTSNI------------ 210 (303)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--------------~~~~~~~~~g~t~l~~~~~~------------ 210 (303)
+.+|++.+....+. +.++.+|..+. ..++..|.+|.||||+++..
T Consensus 225 ~~~pLhlAve~g~~---------e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~ 295 (929)
T KOG0510|consen 225 KATPLHLAVEGGDI---------EMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGF 295 (929)
T ss_pred CCcchhhhhhcCCH---------HHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHc
Confidence 88888888766654 34444444322 23566788999999988621
Q ss_pred -----cccCCcccHHhHHHhcCCHHHHHHHhh-cCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccc---
Q 043678 211 -----ADKDRKMTALHLAAGKGDARTVERIIS-ENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLID--- 281 (303)
Q Consensus 211 -----~~~~~~~t~L~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~--- 281 (303)
..+..+.||||.|+.+|++..++.||+ .|.-..+..|-.|.||||+|++.||..+++.|++. |++..
T Consensus 296 Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~----GA~~~~~~ 371 (929)
T KOG0510|consen 296 GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK----GALFLNMS 371 (929)
T ss_pred CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhc----Chhhhccc
Confidence 223578999999999999999999998 66555778888999999999999998888888885 45444
Q ss_pred cCCCCCCcHHHHHHhcCCCC
Q 043678 282 EGDAKGNTPLHVLAAVRPKE 301 (303)
Q Consensus 282 ~~d~~g~tpL~~A~~~~~~~ 301 (303)
..|.+|+||||.|++.|+..
T Consensus 372 e~D~dg~TaLH~Aa~~g~~~ 391 (929)
T KOG0510|consen 372 EADSDGNTALHLAAKYGNTS 391 (929)
T ss_pred ccccCCchhhhHHHHhccHH
Confidence 56999999999999998753
|
|
| >KOG0510 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=254.32 Aligned_cols=258 Identities=22% Similarity=0.248 Sum_probs=226.9
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.+|+|.|+..|+.++++.|++++++++..+..|.||||.| +..++.|..+.|++ .++++.+.+.+|.+|+|.|+
T Consensus 122 ~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A--~~~~~~E~~k~Li~----~~a~~~K~~~~~~~~iH~aa 195 (929)
T KOG0510|consen 122 NAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLA--ARKNKVEAKKELIN----KGADPCKSDIDGNFPIHEAA 195 (929)
T ss_pred cCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHH--HhcChHHHHHHHHh----cCCCCCcccCcCCchHHHHH
Confidence 4799999999999999999999999998998899999999 99999998888888 89999999999999999999
Q ss_pred HhCCHHHHHHHHH-HhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcc-----------
Q 043678 82 KFGHFDIVRVLIE-RAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLI----------- 149 (303)
Q Consensus 82 ~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~----------- 149 (303)
.+|..++.+.++. +|.. .+..++..+..+.||||.|+..|+.++++.+++++..
T Consensus 196 ~s~s~e~mEi~l~~~g~~--------------r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q 261 (929)
T KOG0510|consen 196 RSGSKECMEIFLPEHGYE--------------RQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQ 261 (929)
T ss_pred Hhcchhhhhhhhccccch--------------hhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHH
Confidence 9999999999997 2221 1233668899999999999999999999998766543
Q ss_pred ----eeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccc---------------
Q 043678 150 ----LIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNI--------------- 210 (303)
Q Consensus 150 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~--------------- 210 (303)
++..|.+|.+|++++.+.+. .+.+..|+..|.+ ++..+.++.||||.|+..
T Consensus 262 ~kelv~~~d~dg~tpLH~a~r~G~---------~~svd~Ll~~Ga~-I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~ 331 (929)
T KOG0510|consen 262 EKELVNDEDNDGCTPLHYAARQGG---------PESVDNLLGFGAS-INSKNKDEESPLHFAAIYGRINTVERLLQESDT 331 (929)
T ss_pred HHHHhhcccccCCchHHHHHHcCC---------hhHHHHHHHcCCc-ccccCCCCCCchHHHHHcccHHHHHHHHhCcCc
Confidence 67788899999999987766 4788889999888 888889999999988732
Q ss_pred ----cccCCcccHHhHHHhcCCHHHHHHHhhcCCcccc--cccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCC
Q 043678 211 ----ADKDRKMTALHLAAGKGDARTVERIISENPKCYE--LVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGD 284 (303)
Q Consensus 211 ----~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d 284 (303)
..+..|+||||.|++.|+.++++.||.+|+...+ ..|+.|.||||.|+.+|+..+++.|+. +|+++..+|
T Consensus 332 rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~----~Ga~I~~~n 407 (929)
T KOG0510|consen 332 RLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLIS----HGADIGVKN 407 (929)
T ss_pred cccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHH----cCCceeecc
Confidence 2235899999999999999999999999999765 449999999999999999888888887 588899999
Q ss_pred CCCCcHHHH
Q 043678 285 AKGNTPLHV 293 (303)
Q Consensus 285 ~~g~tpL~~ 293 (303)
..|.+++++
T Consensus 408 ~~g~SA~~~ 416 (929)
T KOG0510|consen 408 KKGKSAFDT 416 (929)
T ss_pred ccccccccc
Confidence 999999985
|
|
| >PHA02989 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=256.66 Aligned_cols=254 Identities=15% Similarity=0.124 Sum_probs=138.8
Q ss_pred CCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhC------C
Q 043678 12 GNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFG------H 85 (303)
Q Consensus 12 g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~------~ 85 (303)
.+.+++++|+++|++++..+ .|.||||.++....++.+++++|++ .|++++.++ .+.||||.|+..+ +
T Consensus 14 ~~~~~v~~LL~~GadvN~~~-~g~t~l~~~~~~~~~~~~iv~~Ll~----~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~ 87 (494)
T PHA02989 14 VDKNALEFLLRTGFDVNEEY-RGNSILLLYLKRKDVKIKIVKLLID----NGADVNYKG-YIETPLCAVLRNREITSNKI 87 (494)
T ss_pred CcHHHHHHHHHcCCCccccc-CCCCHHHHHHhcCCCChHHHHHHHH----cCCCccCCC-CCCCcHHHHHhccCcchhhH
Confidence 44555555555555444332 2555554431111124455555555 455555544 3455555554432 2
Q ss_pred HHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhc---CcHHHHHhHhhCCcce-eeecccccchh
Q 043678 86 FDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSH---GNVDLFKLKKTNNLIL-IFRDSDEKTNI 161 (303)
Q Consensus 86 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~---~~~~~v~~L~~~~~~~-~~~~~~~~~~~ 161 (303)
.+++++|+++|++++ .++..|.||||.|+.. ++.+++++|++.|+++ ...+..|.+++
T Consensus 88 ~~iv~~Ll~~Gadin------------------~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpL 149 (494)
T PHA02989 88 KKIVKLLLKFGADIN------------------LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLL 149 (494)
T ss_pred HHHHHHHHHCCCCCC------------------CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHH
Confidence 445555555555532 4445555555544433 3445555555555555 45555555555
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccc--------------------c-ccCCcccHH
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNI--------------------A-DKDRKMTAL 220 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~--------------------~-~~~~~~t~L 220 (303)
+.+....... .++++.|++.|.+.....+..|.||++.++.. . ....+.++|
T Consensus 150 h~a~~~~~~~-------~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l 222 (494)
T PHA02989 150 HMYLESFSVK-------KDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVL 222 (494)
T ss_pred HHHHHhccCC-------HHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHH
Confidence 5433211000 24455555555442222344555555432110 0 012355667
Q ss_pred hHHHhc------CCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHH
Q 043678 221 HLAAGK------GDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVL 294 (303)
Q Consensus 221 ~~a~~~------~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A 294 (303)
|.++.. +..+++++|+. |++ ++.+|..|+||||+|+..++.++++.|++ .|++++.+|..|+||||+|
T Consensus 223 ~~~~~~~~~~~~~~~~il~~l~~-~ad-vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~----~Gadin~~d~~G~TpL~~A 296 (494)
T PHA02989 223 ESFLDNNKILSKKEFKVLNFILK-YIK-INKKDKKGFNPLLISAKVDNYEAFNYLLK----LGDDIYNVSKDGDTVLTYA 296 (494)
T ss_pred HHHHHhchhhcccchHHHHHHHh-CCC-CCCCCCCCCCHHHHHHHhcCHHHHHHHHH----cCCCccccCCCCCCHHHHH
Confidence 665543 35567776654 677 58888889999999999888888888877 5778888899999999999
Q ss_pred HhcCCCCC
Q 043678 295 AAVRPKEF 302 (303)
Q Consensus 295 ~~~~~~~i 302 (303)
++.++.++
T Consensus 297 ~~~~~~~i 304 (494)
T PHA02989 297 IKHGNIDM 304 (494)
T ss_pred HHcCCHHH
Confidence 88887653
|
|
| >PHA02716 CPXV016; CPX019; EVM010; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=258.47 Aligned_cols=260 Identities=14% Similarity=0.073 Sum_probs=175.0
Q ss_pred hcCCChhHHHHHHHH-HHhhhh-cccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCC--
Q 043678 10 SAGNSEPFKDMARDV-IESLLT-AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGH-- 85 (303)
Q Consensus 10 ~~g~~~~v~~ll~~~-~~~~~~-~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~-- 85 (303)
+.++.+++++|+++| ++.+.. +..|.||||+|+....++.+++++|++ .|++++.+|..|.||||+|+..|+
T Consensus 151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe----~GADVN~kD~~G~TPLH~Aa~~g~~~ 226 (764)
T PHA02716 151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCN----NGVNVNLQNNHLITPLHTYLITGNVC 226 (764)
T ss_pred cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 468999999999999 877765 677999999983334567899999998 899999999999999999999995
Q ss_pred HHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHH---hcCcHHHHHhHhhCCcceeeecccccchhh
Q 043678 86 FDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAV---SHGNVDLFKLKKTNNLILIFRDSDEKTNIL 162 (303)
Q Consensus 86 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~---~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~ 162 (303)
.++|++|+++|++++ .+|..|.||||+|+ ..++.++++.+++.+..... ...+..
T Consensus 227 ~eIVklLLe~GADVN------------------~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~----~~~~~~ 284 (764)
T PHA02716 227 ASVIKKIIELGGDMD------------------MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKV----KNIPMI 284 (764)
T ss_pred HHHHHHHHHcCCCCC------------------CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccccc----ccchhh
Confidence 589999999999854 78889999999764 33445555554432211000 000000
Q ss_pred hhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCccccccc-------------------ccccCCcccHHhHH
Q 043678 163 FKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSN-------------------IADKDRKMTALHLA 223 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~-------------------~~~~~~~~t~L~~a 223 (303)
.. ...........++++.|++.+.+ ++..|..|.||||+++. ...+..|.||||+|
T Consensus 285 L~----~~i~AA~~g~leiVklLLe~GAd-IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A 359 (764)
T PHA02716 285 LH----SYITLARNIDISVVYSFLQPGVK-LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTY 359 (764)
T ss_pred hH----HHHHHHHcCCHHHHHHHHhCCCc-eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHH
Confidence 00 00000011113455555554444 44555555555554320 01123556667776
Q ss_pred Hh--------------cCCHHHHHHHhhcCCcccccccCCCChHHHHH----HHhCCchhhHHHhhccc-----------
Q 043678 224 AG--------------KGDARTVERIISENPKCYELVDNRGWNFLHYA----MVSFHVGQLRNLLENNS----------- 274 (303)
Q Consensus 224 ~~--------------~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A----~~~~~~~~~~~ll~~~~----------- 274 (303)
+. .++.+++++|+++|++ ++.+|..|+||||.+ ...++.++++.|++...
T Consensus 360 ~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD-In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ 438 (764)
T PHA02716 360 LSMLSVVNILDPETDNDIRLDVIQCLISLGAD-ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQD 438 (764)
T ss_pred HHhhhhhccccccccccChHHHHHHHHHCCCC-CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhh
Confidence 54 3688999999999999 589999999999942 23456777777666321
Q ss_pred ----------------------------------------------chhcccccCCCCCCcHHHHHHhcCCCC
Q 043678 275 ----------------------------------------------LARSLIDEGDAKGNTPLHVLAAVRPKE 301 (303)
Q Consensus 275 ----------------------------------------------~~~~~~~~~d~~g~tpL~~A~~~~~~~ 301 (303)
..+.+++..|..|+||||+|+..|+.+
T Consensus 439 ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~ 511 (764)
T PHA02716 439 LLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNA 511 (764)
T ss_pred hhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCcc
Confidence 112345667899999999999998764
|
|
| >PHA02946 ankyin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=245.78 Aligned_cols=237 Identities=16% Similarity=0.182 Sum_probs=192.3
Q ss_pred hHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHh
Q 043678 4 NFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF 83 (303)
Q Consensus 4 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~ 83 (303)
+++.++..|+.+.++.+++.. ....+.++||.+|.....+.+++++|++ .|.+++.+|..|.||||+|+..
T Consensus 12 sl~~~~~~~n~~~~~~~l~~~-----~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~G~TpLh~Aa~~ 82 (446)
T PHA02946 12 SLYAKYNSKNLDVFRNMLQAI-----EPSGNYHILHAYCGIKGLDERFVEELLH----RGYSPNETDDDGNYPLHIASKI 82 (446)
T ss_pred HHHHHHccCcHHHHHHHHhcc-----CCCCCChHHHHHHHhcCCCHHHHHHHHH----CcCCCCccCCCCCCHHHHHHHc
Confidence 467788888989888888752 1222578999885445667789999998 8999999999999999999999
Q ss_pred CCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCc--HHHHHhHhhCCcceee-ecccccch
Q 043678 84 GHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGN--VDLFKLKKTNNLILIF-RDSDEKTN 160 (303)
Q Consensus 84 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~--~~~v~~L~~~~~~~~~-~~~~~~~~ 160 (303)
|+.+++++|+++|+++ +.+|..|.||||+|+..++ .+++++|++.|++++. .+..|.++
T Consensus 83 g~~eiv~lLL~~GAdi------------------n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tp 144 (446)
T PHA02946 83 NNNRIVAMLLTHGADP------------------NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGP 144 (446)
T ss_pred CCHHHHHHHHHCcCCC------------------CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcH
Confidence 9999999999999885 4889999999999988664 7899999999999885 57788888
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhc--CCHHHHHHHhhc
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGK--GDARTVERIISE 238 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~--~~~~~v~~Ll~~ 238 (303)
++.+. ....++++.|++.+.+ ++..|..|.|| ||+|+.. ++.+++++|+++
T Consensus 145 L~aa~----------~~~~~vv~~Ll~~gad-~~~~d~~G~t~----------------Lh~A~~~~~~~~~~v~~Ll~~ 197 (446)
T PHA02946 145 LLACT----------DPSERVFKKIMSIGFE-ARIVDKFGKNH----------------IHRHLMSDNPKASTISWMMKL 197 (446)
T ss_pred HHHHH----------CCChHHHHHHHhcccc-ccccCCCCCCH----------------HHHHHHhcCCCHHHHHHHHHc
Confidence 86432 1225788888887766 66677666655 7777664 456899999999
Q ss_pred CCcccccccCCCChHHHHHHHhC--CchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCC
Q 043678 239 NPKCYELVDNRGWNFLHYAMVSF--HVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPK 300 (303)
Q Consensus 239 g~~~~~~~~~~g~tpl~~A~~~~--~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~ 300 (303)
|++ ++.+|..|+||||+|+..+ +.++++.|++ |++++.+|..|.||||+|++.++.
T Consensus 198 Gad-in~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-----gadin~~d~~G~TpLh~A~~~~~~ 255 (446)
T PHA02946 198 GIS-PSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-----STDVNKQNKFGDSPLTLLIKTLSP 255 (446)
T ss_pred CCC-CcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-----CCCCCCCCCCCCCHHHHHHHhCCh
Confidence 999 5889999999999999886 6566666553 588999999999999999998763
|
|
| >PHA02917 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=255.73 Aligned_cols=117 Identities=16% Similarity=0.137 Sum_probs=93.8
Q ss_pred HHHHHHHHHhccchhchhhhcCCCcccc--------------cccccccCCcccHHhHHHhcC-----------------
Q 043678 179 YAALPKLLEKKKNLIKETDQYGWTPIQS--------------TSNIADKDRKMTALHLAAGKG----------------- 227 (303)
Q Consensus 179 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~--------------~~~~~~~~~~~t~L~~a~~~~----------------- 227 (303)
.++++.|++.|++ ++.++..|.++... +........|.||||.|++.+
T Consensus 346 ~~~v~~Ll~~GAd-vn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~ 424 (661)
T PHA02917 346 IPLVECMLEYGAV-VNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCD 424 (661)
T ss_pred HHHHHHHHHcCCC-CCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccch
Confidence 4588999999988 77888899987321 111222346999999987543
Q ss_pred ------CHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHh-cCCC
Q 043678 228 ------DARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAA-VRPK 300 (303)
Q Consensus 228 ------~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~-~~~~ 300 (303)
..+++++|+++|++ ++.+|..|+||||+|+..++.++++.|++ .|++++.+|..|+||||+|+. .++.
T Consensus 425 ~~~~~~~~~~v~~Ll~~GAd-IN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~----~GAdin~~d~~G~T~L~~A~~~~~~~ 499 (661)
T PHA02917 425 MSYACPILSTINICLPYLKD-INMIDKRGETLLHKAVRYNKQSLVSLLLE----SGSDVNIRSNNGYTCIAIAINESRNI 499 (661)
T ss_pred hhhhhhhHHHHHHHHHCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHH----CcCCCCCCCCCCCCHHHHHHHhCCCH
Confidence 35678999999999 59999999999999999999888887777 688899999999999999995 5554
Q ss_pred C
Q 043678 301 E 301 (303)
Q Consensus 301 ~ 301 (303)
+
T Consensus 500 ~ 500 (661)
T PHA02917 500 E 500 (661)
T ss_pred H
Confidence 3
|
|
| >PHA02798 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=254.93 Aligned_cols=248 Identities=16% Similarity=0.108 Sum_probs=189.7
Q ss_pred HhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcc-----cchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHh
Q 043678 9 ASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSE-----RENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF 83 (303)
Q Consensus 9 ~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~-----~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~ 83 (303)
...++.++|++|+++|++.+..+..|.||||.| +.. +..+++++|++ .|++++.++..|.||||+|+..
T Consensus 46 ~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~--~~n~~~~~~~~~iv~~Ll~----~GadiN~~d~~G~TpLh~a~~~ 119 (489)
T PHA02798 46 RDSPSTDIVKLFINLGANVNGLDNEYSTPLCTI--LSNIKDYKHMLDIVKILIE----NGADINKKNSDGETPLYCLLSN 119 (489)
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHH--HHhHHhHHhHHHHHHHHHH----CCCCCCCCCCCcCcHHHHHHHc
Confidence 334578999999999998887888899999998 643 66899999998 8999999999999999999987
Q ss_pred C---CHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCc---HHHHHhHhhCCcceeeec-cc
Q 043678 84 G---HFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGN---VDLFKLKKTNNLILIFRD-SD 156 (303)
Q Consensus 84 ~---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~---~~~v~~L~~~~~~~~~~~-~~ 156 (303)
+ +.+++++|+++|++++ ..|..|.||||+|+..++ .+++++|++.|++++..+ ..
T Consensus 120 ~~~~~~~iv~~Ll~~Gadvn------------------~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~ 181 (489)
T PHA02798 120 GYINNLEILLFMIENGADTT------------------LLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKE 181 (489)
T ss_pred CCcChHHHHHHHHHcCCCcc------------------ccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcC
Confidence 5 7899999999998854 889999999999999987 899999999999988775 45
Q ss_pred ccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHh
Q 043678 157 EKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERII 236 (303)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll 236 (303)
+.++++...... ......+++++|+++|.. ++..+..|.++++.. ...+..+...++.+++.+|+
T Consensus 182 ~~t~Lh~~~~~~-----~~~~~~~ivk~Li~~Ga~-i~~~~~~~~~~~~~~---------l~~l~~~~~~~~~~i~~~l~ 246 (489)
T PHA02798 182 KYDTLHCYFKYN-----IDRIDADILKLFVDNGFI-INKENKSHKKKFMEY---------LNSLLYDNKRFKKNILDFIF 246 (489)
T ss_pred CCcHHHHHHHhc-----cccCCHHHHHHHHHCCCC-cccCCccccchHHHH---------HHHHHhhcccchHHHHHHHH
Confidence 677776543211 011236889999998876 566666666554310 00122334455666777665
Q ss_pred hcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCC
Q 043678 237 SENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKE 301 (303)
Q Consensus 237 ~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~ 301 (303)
. +++ ++.+|..|+||||+|+.+++.+++++|++ .|++++.+|..|+||||+|++.++.+
T Consensus 247 ~-~~d-vN~~d~~G~TPL~~A~~~~~~~~v~~LL~----~GAdin~~d~~G~TpL~~A~~~~~~~ 305 (489)
T PHA02798 247 S-YID-INQVDELGFNPLYYSVSHNNRKIFEYLLQ----LGGDINIITELGNTCLFTAFENESKF 305 (489)
T ss_pred h-cCC-CCCcCcCCccHHHHHHHcCcHHHHHHHHH----cCCcccccCCCCCcHHHHHHHcCcHH
Confidence 5 566 47788888888888888888777777776 46778888888888888888777654
|
|
| >PHA02730 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=248.75 Aligned_cols=276 Identities=14% Similarity=0.059 Sum_probs=186.4
Q ss_pred ChhHHHHHhcC---CChhHHHHHHHHHHhhhhcccCCchhhhhhhhccc--chhhHHHHHHHHHhCc--hhhhccccCCC
Q 043678 2 DLNFFKAASAG---NSEPFKDMARDVIESLLTAKAKNTILHINIISSER--ENVSTKFVEEILEKCP--ALLLQVNAKGD 74 (303)
Q Consensus 2 ~~~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~--~~~~~~~Ll~~~~~~~--~~~~~~~~~g~ 74 (303)
.||||+|+..| +.++|++|+++|++...++..|.||||+| +..+ +.|++++|++ .| ++.+..+..+.
T Consensus 42 ~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~A--a~~~~~~~eIv~~Ll~----~~~~~~~~~~~~~~d 115 (672)
T PHA02730 42 NNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVY--SKRKYVKSQIVHLLIS----SYSNASNELTSNIND 115 (672)
T ss_pred CcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHH--HHcCCCcHHHHHHHHh----cCCCCCcccccccCC
Confidence 47888888886 47888888888888777777788888888 6655 6888888887 54 34466666688
Q ss_pred cHHHHHHH--hCCHHHHHHHHH-HhHHhhcCchHHHHHHHHhhhhhccc-cCCCccHHHHHHhcCcHHHHHhHhhCCcce
Q 043678 75 TPLHLAAK--FGHFDIVRVLIE-RAKLAQRGDEELENRIEAFRQMIRMV-NNEKNTALHEAVSHGNVDLFKLKKTNNLIL 150 (303)
Q Consensus 75 tpL~~A~~--~~~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~ 150 (303)
+||+.++. +++.+++++|++ .+.+++.. .+.. +..|.+|++.+...++.++|++|++.|+++
T Consensus 116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~--------------~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v 181 (672)
T PHA02730 116 FDLYSYMSSDNIDLRLLKYLIVDKRIRPSKN--------------TNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYS 181 (672)
T ss_pred chHHHHHHhcCCcHHHHHHHHHhcCCChhhh--------------hhhhccccchhhhhHhcCCCchHHHHHHHHcCCcc
Confidence 88888877 678888888886 44444300 0111 137899999999999999999999999998
Q ss_pred e-------eecccccchhhh-hhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccc--cc------------
Q 043678 151 I-------FRDSDEKTNILF-KFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQS--TS------------ 208 (303)
Q Consensus 151 ~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~--~~------------ 208 (303)
. ..+.....++++ ..... ........++++.|+++|.+ ++..|..|.||||+ +.
T Consensus 182 ~g~~~~~~~~~~~~c~~~l~~~il~~---~~~~~n~~eiv~lLIs~Gad-IN~kd~~G~TpLh~~~~~~~~~~eiv~~Li 257 (672)
T PHA02730 182 TGYVFRSCMYDSDRCKNSLHYYILSH---RESESLSKDVIKCLIDNNVS-IHGRDEGGSLPIQYYWSCSTIDIEIVKLLI 257 (672)
T ss_pred cccccccccccCCccchhHHHHHHhh---hhhhccCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCcccHHHHHHHH
Confidence 4 123333333333 22111 11234447888888888876 78888888888872 11
Q ss_pred --------------------------------------------------------------------------------
Q 043678 209 -------------------------------------------------------------------------------- 208 (303)
Q Consensus 209 -------------------------------------------------------------------------------- 208 (303)
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~ 337 (672)
T PHA02730 258 KDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQ 337 (672)
T ss_pred hccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhc
Confidence
Q ss_pred ---------------------------------cccccCCcccHHhHHHhcCC----HHHHHHHhhcCCc-ccccccCCC
Q 043678 209 ---------------------------------NIADKDRKMTALHLAAGKGD----ARTVERIISENPK-CYELVDNRG 250 (303)
Q Consensus 209 ---------------------------------~~~~~~~~~t~L~~a~~~~~----~~~v~~Ll~~g~~-~~~~~~~~g 250 (303)
....+..|.||||+|+..++ .+++++|+++|++ .++.+|..|
T Consensus 338 ~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G 417 (672)
T PHA02730 338 QDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKTTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNG 417 (672)
T ss_pred cchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcCCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCC
Confidence 00111356778887776664 6788888887763 246677777
Q ss_pred ChHHHH---HHHhCC----chh-hHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCC
Q 043678 251 WNFLHY---AMVSFH----VGQ-LRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKE 301 (303)
Q Consensus 251 ~tpl~~---A~~~~~----~~~-~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~ 301 (303)
+||||. |...+. .++ ...+++.++..|++++.+|..|+||||+|+..++.+
T Consensus 418 ~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~e 476 (672)
T PHA02730 418 RLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQ 476 (672)
T ss_pred CchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHH
Confidence 888773 222221 121 112334444468889999999999999999887654
|
|
| >PHA02791 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=228.91 Aligned_cols=219 Identities=13% Similarity=0.071 Sum_probs=183.0
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||+|+..|+.++++.|++.|++.... +|.||||+| +..|+.+++++|+. .|++++.+|..|.||||+|+
T Consensus 31 ~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~--d~~TpLh~A--a~~g~~eiV~lLL~----~Gadvn~~d~~G~TpLh~Aa 102 (284)
T PHA02791 31 HSALYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQA--ATLEDTKIVKILLF----SGMDDSQFDDKGNTALYYAV 102 (284)
T ss_pred CcHHHHHHHcCCHHHHHHHHHCcCCCcCC--CCCCHHHHH--HHCCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHH
Confidence 48999999999999999999998765433 378999999 99999999999998 89999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCc-cHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKN-TALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
..|+.+++++|+++|++++ .++..|+ ||||+|+..|+.+++++|++.+.+.. ....|.+|
T Consensus 103 ~~g~~eivk~Ll~~gadin------------------~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~-d~~~g~Tp 163 (284)
T PHA02791 103 DSGNMQTVKLFVKKNWRLM------------------FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSC 163 (284)
T ss_pred HcCCHHHHHHHHHCCCCcC------------------ccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc-ccccCccH
Confidence 9999999999999998754 6677774 89999999999999999998765431 11246788
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
++.+..... .++++.|++.+.+ ++..+..|.| +|||+|+..|+.+++++|+++|+
T Consensus 164 Lh~Aa~~g~---------~eiv~lLL~~gAd-~n~~d~~g~t---------------~~L~~Aa~~~~~e~v~lLl~~Ga 218 (284)
T PHA02791 164 IHITIKNGH---------VDMMILLLDYMTS-TNTNNSLLFI---------------PDIKLAIDNKDLEMLQALFKYDI 218 (284)
T ss_pred HHHHHHcCC---------HHHHHHHHHCCCC-CCcccCCCCC---------------hHHHHHHHcCCHHHHHHHHHCCC
Confidence 888875544 5999999999876 5666554432 24999999999999999999999
Q ss_pred cccccccCCCChHHHHHHHhCCchhhHHHhhcccchhccc
Q 043678 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLI 280 (303)
Q Consensus 241 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~ 280 (303)
++ +.+|..| +|| ++.|++++|++.-.++..+-
T Consensus 219 ~i-n~~~~~~-~~l------~~~e~~~~ll~~~~~~~~~~ 250 (284)
T PHA02791 219 NI-YSVNLEN-VLL------DDAEIAKMIIEKHVEYKSDS 250 (284)
T ss_pred CC-ccCcccC-ccC------CCHHHHHHHHHhhhhhcccc
Confidence 94 8888854 665 88999999998866654443
|
|
| >PHA03100 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=251.77 Aligned_cols=224 Identities=21% Similarity=0.186 Sum_probs=196.9
Q ss_pred ChhHHH-----HHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhh--cccchhhHHHHHHHHHhCchhhhccccCCC
Q 043678 2 DLNFFK-----AASAGNSEPFKDMARDVIESLLTAKAKNTILHINIIS--SERENVSTKFVEEILEKCPALLLQVNAKGD 74 (303)
Q Consensus 2 ~~~L~~-----A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~--~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~ 74 (303)
.+|||. |+..|+.++++.|++.|++....+..|.||||+| + ..|+.+++++|++ .|.+++..+..|.
T Consensus 69 ~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A--~~~~~~~~~iv~~Ll~----~g~~~~~~~~~g~ 142 (480)
T PHA03100 69 STPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYA--ISKKSNSYSIVEYLLD----NGANVNIKNSDGE 142 (480)
T ss_pred cCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHH--HhcccChHHHHHHHHH----cCCCCCccCCCCC
Confidence 479999 9999999999999999998877787899999999 9 9999999999999 8999999999999
Q ss_pred cHHHHHHHhC--CHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceee
Q 043678 75 TPLHLAAKFG--HFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIF 152 (303)
Q Consensus 75 tpL~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~ 152 (303)
||||+|+..| +.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++.|+++..
T Consensus 143 t~L~~A~~~~~~~~~iv~~Ll~~g~din------------------~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~ 204 (480)
T PHA03100 143 NLLHLYLESNKIDLKILKLLIDKGVDIN------------------AKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINA 204 (480)
T ss_pred cHHHHHHHcCCChHHHHHHHHHCCCCcc------------------cccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccC
Confidence 9999999999 9999999999998754 7788999999999999999999999999999998
Q ss_pred ecccc------cchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhc
Q 043678 153 RDSDE------KTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGK 226 (303)
Q Consensus 153 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~ 226 (303)
.+..+ .++++.+..... ...++++.|++.+.+ ++..+..| .||||+|+..
T Consensus 205 ~~~~~~~~~~~~t~l~~a~~~~~-------~~~~iv~~Ll~~g~d-in~~d~~g----------------~TpL~~A~~~ 260 (480)
T PHA03100 205 GDIETLLFTIFETPLHIAACYNE-------ITLEVVNYLLSYGVP-INIKDVYG----------------FTPLHYAVYN 260 (480)
T ss_pred CCCCCCcHHHHHhHHHHHHHhCc-------CcHHHHHHHHHcCCC-CCCCCCCC----------------CCHHHHHHHc
Confidence 88888 444444432211 115789999998776 66666555 4669999999
Q ss_pred CCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhccc
Q 043678 227 GDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNS 274 (303)
Q Consensus 227 ~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~ 274 (303)
|+.+++++|+++|++ ++.+|..|.||+|+|++.++.++++.|++.+.
T Consensus 261 ~~~~iv~~Ll~~gad-~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~ 307 (480)
T PHA03100 261 NNPEFVKYLLDLGAN-PNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 307 (480)
T ss_pred CCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHhCCHHHHHHHHhcCC
Confidence 999999999999998 58999999999999999999999999998644
|
|
| >KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=207.86 Aligned_cols=173 Identities=24% Similarity=0.317 Sum_probs=152.9
Q ss_pred hhHHHHHhcCCChhHHHHHHH-HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARD-VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
||||.||..|+.+++++|+++ ++.++..|..|+||||.| +..|+.|+++.|+. ..+.++|.++..|.||||||+
T Consensus 40 t~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia--~s~g~~evVk~Ll~---r~~advna~tn~G~T~LHyAa 114 (226)
T KOG4412|consen 40 TPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIA--ASNGNDEVVKELLN---RSGADVNATTNGGQTCLHYAA 114 (226)
T ss_pred ceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhh--hhcCcHHHHHHHhc---CCCCCcceecCCCcceehhhh
Confidence 799999999999999999965 655555677799999999 99999999999988 249999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+|+++|+++|+.+ +++|..|.||||.|+.-|+.+++++|+..++.
T Consensus 115 gK~r~eIaqlLle~ga~i------------------~~kD~~~qtplHRAAavGklkvie~Li~~~a~------------ 164 (226)
T KOG4412|consen 115 GKGRLEIAQLLLEKGALI------------------RIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP------------ 164 (226)
T ss_pred cCChhhHHHHHHhcCCCC------------------cccccccCchhHHHHhccchhhHHHHHhcCCC------------
Confidence 999999999999999874 49999999999999999999999998777664
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
++..|..|+|| ||.|...|+.+....|+++|++
T Consensus 165 -------------------------------~n~qDk~G~Tp----------------L~~al~e~~~d~a~lLV~~gAd 197 (226)
T KOG4412|consen 165 -------------------------------LNTQDKYGFTP----------------LHHALAEGHPDVAVLLVRAGAD 197 (226)
T ss_pred -------------------------------CCcccccCccH----------------HHHHHhccCchHHHHHHHhccc
Confidence 56666666544 9999888999999999999999
Q ss_pred ccccccCCCChHHHHHHH
Q 043678 242 CYELVDNRGWNFLHYAMV 259 (303)
Q Consensus 242 ~~~~~~~~g~tpl~~A~~ 259 (303)
....|++| ||+..|+-
T Consensus 198 -~~~edke~-t~~~~a~~ 213 (226)
T KOG4412|consen 198 -TDREDKEG-TALRIACN 213 (226)
T ss_pred -eeeccccC-chHHHHHH
Confidence 58899988 99887764
|
|
| >KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=241.04 Aligned_cols=206 Identities=25% Similarity=0.317 Sum_probs=178.0
Q ss_pred hHHHHHhcCCChhHHHHHHH-HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccc-cCCCcHHHHHH
Q 043678 4 NFFKAASAGNSEPFKDMARD-VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVN-AKGDTPLHLAA 81 (303)
Q Consensus 4 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~g~tpL~~A~ 81 (303)
-++.|+..|+++.++.+++. +.+.+.+|.+|.|+|||| +.+++.+++++|++ +|+++|... .-+.||||||+
T Consensus 47 ~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWA--AiNNrl~v~r~li~----~gadvn~~gG~l~stPLHWAa 120 (600)
T KOG0509|consen 47 DIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWA--AINNRLDVARYLIS----HGADVNAIGGVLGSTPLHWAA 120 (600)
T ss_pred hhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHH--HHcCcHHHHHHHHH----cCCCccccCCCCCCCcchHHH
Confidence 46789999999999999999 877777888899999999 99999999999999 899999988 56889999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
.+|+..+|++|+++||+++ .+|.+|.+|+|.|++.++.-+|-+++..+++
T Consensus 121 r~G~~~vv~lLlqhGAdpt------------------~~D~~G~~~lHla~~~~~~~~vayll~~~~d------------ 170 (600)
T KOG0509|consen 121 RNGHISVVDLLLQHGADPT------------------LKDKQGLTPLHLAAQFGHTALVAYLLSKGAD------------ 170 (600)
T ss_pred HcCcHHHHHHHHHcCCCCc------------------eecCCCCcHHHHHHHhCchHHHHHHHHhccc------------
Confidence 9999999999999999965 8999999999999999999888887766654
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
++.+|.+| +||||+|+.+|....++.||+.|+.
T Consensus 171 -------------------------------~d~~D~~g----------------rTpLmwAaykg~~~~v~~LL~f~a~ 203 (600)
T KOG0509|consen 171 -------------------------------IDLRDNNG----------------RTPLMWAAYKGFALFVRRLLKFGAS 203 (600)
T ss_pred -------------------------------CCCcCCCC----------------CCHHHHHHHhcccHHHHHHHHhccc
Confidence 44455544 4559999999988889999999998
Q ss_pred cccccc-CCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhc
Q 043678 242 CYELVD-NRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAV 297 (303)
Q Consensus 242 ~~~~~~-~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~ 297 (303)
+ ...| ..|.||||+|+..|+.++++ |+.. .|++.+.+|.+|.||+++|.+.
T Consensus 204 ~-~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~---g~~~~d~~~~~g~tp~~LA~~~ 255 (600)
T KOG0509|consen 204 L-LLTDDNHGNTPLHWAVVGGNLTAVK-LLLE---GGADLDKTNTNGKTPFDLAQER 255 (600)
T ss_pred c-cccccccCCchHHHHHhcCCcceEe-hhhh---cCCcccccccCCCCHHHHHHHh
Confidence 5 5555 89999999999999998888 4443 5677888999999999999665
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=236.76 Aligned_cols=214 Identities=17% Similarity=0.145 Sum_probs=186.8
Q ss_pred CCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHh
Q 043678 34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAF 113 (303)
Q Consensus 34 g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 113 (303)
.+++||.| +..|+.+++++|++ .|.+++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 2 ~~~~L~~A--~~~g~~~iv~~Ll~----~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~------------- 62 (413)
T PHA02875 2 DQVALCDA--ILFGELDIARRLLD----IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD------------- 62 (413)
T ss_pred CchHHHHH--HHhCCHHHHHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-------------
Confidence 57899999 99999999999999 799999999999999999999999999999999998754
Q ss_pred hhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCccee-eecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 114 RQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILI-FRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 114 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
..+..+.||||.|+..|+.+++++|++.|.... ..+..|.++++.+..... .++++.|++.+.+
T Consensus 63 -----~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~---------~~iv~~Ll~~gad- 127 (413)
T PHA02875 63 -----VKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKK---------LDIMKLLIARGAD- 127 (413)
T ss_pred -----ccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCC---------HHHHHHHHhCCCC-
Confidence 567789999999999999999999998887643 445678888888775433 6899999998876
Q ss_pred hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 193 ~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
++..+..| .||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++
T Consensus 128 ~~~~~~~g----------------~tpLh~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~- 189 (413)
T PHA02875 128 PDIPNTDK----------------FSPLHLAVMMGDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLD- 189 (413)
T ss_pred CCCCCCCC----------------CCHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHh-
Confidence 55555544 5669999999999999999999999 58899999999999999999999888888
Q ss_pred ccchhcccccCCCCCC-cHHHHHHhcCCCCC
Q 043678 273 NSLARSLIDEGDAKGN-TPLHVLAAVRPKEF 302 (303)
Q Consensus 273 ~~~~~~~~~~~d~~g~-tpL~~A~~~~~~~i 302 (303)
.|++++..+..|. ||+|+|+..++.++
T Consensus 190 ---~ga~~n~~~~~~~~t~l~~A~~~~~~~i 217 (413)
T PHA02875 190 ---SGANIDYFGKNGCVAALCYAIENNKIDI 217 (413)
T ss_pred ---CCCCCCcCCCCCCchHHHHHHHcCCHHH
Confidence 5788999988875 89999999998764
|
|
| >PHA02730 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=237.88 Aligned_cols=286 Identities=13% Similarity=0.040 Sum_probs=210.9
Q ss_pred ChhHHHHHhcC--CChhHHHHHHHHHHh--hhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhcccc-----C
Q 043678 2 DLNFFKAASAG--NSEPFKDMARDVIES--LLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNA-----K 72 (303)
Q Consensus 2 ~~~L~~A~~~g--~~~~v~~ll~~~~~~--~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-----~ 72 (303)
.||||.|+..| +.+++++|++.|++. ...+..+.+|||.++.+..++.+++++|+.. .+.+++.... .
T Consensus 78 ~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~---~~~~~~~~~~~~~~~~ 154 (672)
T PHA02730 78 LTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVD---KRIRPSKNTNYYIHCL 154 (672)
T ss_pred CChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHh---cCCChhhhhhhhcccc
Confidence 48999999977 799999999996644 4455558999999944448999999999851 4566665532 7
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHHhHHhhcC-----------------------------chHHHHHHHHhhhhhccccCC
Q 043678 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRG-----------------------------DEELENRIEAFRQMIRMVNNE 123 (303)
Q Consensus 73 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 123 (303)
|.+|++++...++.++|++|+++|+++... ..++.+.+...++.++.+|..
T Consensus 155 ~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~ 234 (672)
T PHA02730 155 GLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEG 234 (672)
T ss_pred chhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCC
Confidence 899999999999999999999999988411 113455566677899999999
Q ss_pred CccHHHH--HHhcCcHHHHHhHhh--------------------------------CCcceee-----------------
Q 043678 124 KNTALHE--AVSHGNVDLFKLKKT--------------------------------NNLILIF----------------- 152 (303)
Q Consensus 124 ~~t~l~~--A~~~~~~~~v~~L~~--------------------------------~~~~~~~----------------- 152 (303)
|+||||+ +...++.|+|++|++ .|++...
T Consensus 235 G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~ 314 (672)
T PHA02730 235 GSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRS 314 (672)
T ss_pred CCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhc
Confidence 9999995 555677999999988 4555333
Q ss_pred ---ecccccc-----hhhhhhccchhH-------Hh-h-h-hhHHHHHHHHHHhccchhchhhhcCCCccccccccc---
Q 043678 153 ---RDSDEKT-----NILFKFRHLDLF-------RI-Q-T-NSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIA--- 211 (303)
Q Consensus 153 ---~~~~~~~-----~~~~~~~~~~~~-------~~-~-~-~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~--- 211 (303)
.+..|.. .+...++..+.. .+ . . ....++++.|+++|++ ++.. ..|.||||+++...
T Consensus 315 ~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAd-IN~k-~~G~TpLH~Aa~~nnn~ 392 (672)
T PHA02730 315 ITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGAT-MDKT-TDNNYPLHDYFVNNNNI 392 (672)
T ss_pred cccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCC-CCcC-CCCCcHHHHHHHHcCCc
Confidence 2222221 011111110000 01 1 1 2448999999999988 5654 78999999654211
Q ss_pred --------------------ccCCcccHHhH---HHhcC---------CHHHHHHHhhcCCcccccccCCCChHHHHHHH
Q 043678 212 --------------------DKDRKMTALHL---AAGKG---------DARTVERIISENPKCYELVDNRGWNFLHYAMV 259 (303)
Q Consensus 212 --------------------~~~~~~t~L~~---a~~~~---------~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~ 259 (303)
....|.||||. |...+ ..+++++|+++|++ ++.+|..|+||||+|+.
T Consensus 393 i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GAD-INakD~~G~TPLh~Aa~ 471 (672)
T PHA02730 393 VDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDD-IDMIDNENKTLLYYAVD 471 (672)
T ss_pred chHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccc-hhccCCCCCCHHHHHHH
Confidence 01468999984 33232 23579999999999 59999999999999999
Q ss_pred hCCchhhHHHhhcccchhcccccCCC-CCCcHHHHHHhc
Q 043678 260 SFHVGQLRNLLENNSLARSLIDEGDA-KGNTPLHVLAAV 297 (303)
Q Consensus 260 ~~~~~~~~~ll~~~~~~~~~~~~~d~-~g~tpL~~A~~~ 297 (303)
.++.+++++|++ .|++++..|. .|.||||+|+..
T Consensus 472 ~~~~eive~LI~----~GAdIN~~d~~~g~TaL~~Aa~~ 506 (672)
T PHA02730 472 VNNIQFARRLLE----YGASVNTTSRSIINTAIQKSSYR 506 (672)
T ss_pred hCCHHHHHHHHH----CCCCCCCCCCcCCcCHHHHHHHh
Confidence 999888877776 6888999997 599999999874
|
|
| >KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=252.42 Aligned_cols=288 Identities=18% Similarity=0.197 Sum_probs=185.9
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~ 82 (303)
||+|.|+..+.+++++.++.+|+++...+..|.||||.| +..|+.+++.++++ .++.++..+.+|.||+|.|+.
T Consensus 211 tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a--~~~g~~~i~~~l~~----~ga~~~~~~vr~~tplh~AA~ 284 (1143)
T KOG4177|consen 211 TPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVA--AFMGHLDIVKLLLQ----HGASVNVSTVRGETPLHMAAR 284 (1143)
T ss_pred CchhhhccccccceeeeeeeccCcCCcccccCccHHHHH--HhccchhHHHHHHh----cccccCcccccccCcchhhhc
Confidence 456666666666666666666555555555566666666 66666666666665 555566666666666666666
Q ss_pred hCCHHHHHHHHHHhHHhhcCchHH------------------------------------------------HHHHHHhh
Q 043678 83 FGHFDIVRVLIERAKLAQRGDEEL------------------------------------------------ENRIEAFR 114 (303)
Q Consensus 83 ~~~~~~v~~Ll~~~~~~~~~~~~~------------------------------------------------~~~~~~~~ 114 (303)
.+..+++++|+++|+++....... ........
T Consensus 285 ~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~ 364 (1143)
T KOG4177|consen 285 AGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHG 364 (1143)
T ss_pred cchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccc
Confidence 666666666666655443222110 00000000
Q ss_pred hhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccch---------------------hHHh
Q 043678 115 QMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLD---------------------LFRI 173 (303)
Q Consensus 115 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 173 (303)
..-...+..+.+|+|.|+.+|..++++++...|.+++.....|.++++..-...+ ..+.
T Consensus 365 ~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~l 444 (1143)
T KOG4177|consen 365 AQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPL 444 (1143)
T ss_pred cccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChh
Confidence 1122345566777777777777777777777776666666666665543331111 1111
Q ss_pred hhhh----HHHHHHHHHHhccchhchhhhcCCCcccccc-----------------------------------------
Q 043678 174 QTNS----IYAALPKLLEKKKNLIKETDQYGWTPIQSTS----------------------------------------- 208 (303)
Q Consensus 174 ~~~~----~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~----------------------------------------- 208 (303)
+.+. ..+....++..+. .++.....|.||||.+.
T Consensus 445 hvaa~~g~~~~~~~~l~~~g~-~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~ 523 (1143)
T KOG4177|consen 445 HVAAKKGRYLQIARLLLQYGA-DPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVA 523 (1143)
T ss_pred hhhhhcccHhhhhhhHhhcCC-CcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHH
Confidence 1111 1333333444444 37777888888887543
Q ss_pred --------cc-cccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcc
Q 043678 209 --------NI-ADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSL 279 (303)
Q Consensus 209 --------~~-~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~ 279 (303)
+. .....++||||.|+.+|+..+|++||++|+++ +.+++.|+||||.|+..|+.+++..|++ +|++
T Consensus 524 ~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv-~ak~~~G~TPLH~Aa~~G~~~i~~LLlk----~GA~ 598 (1143)
T KOG4177|consen 524 KILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADV-NAKDKLGYTPLHQAAQQGHNDIAELLLK----HGAS 598 (1143)
T ss_pred HHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccc-cccCCCCCChhhHHHHcChHHHHHHHHH----cCCC
Confidence 00 11247889999999999999999999999995 8899999999999999999888888887 6888
Q ss_pred cccCCCCCCcHHHHHHhcCCCCC
Q 043678 280 IDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 280 ~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+|..|.+|.|||++|++.|+.++
T Consensus 599 vna~d~~g~TpL~iA~~lg~~~~ 621 (1143)
T KOG4177|consen 599 VNAADLDGFTPLHIAVRLGYLSV 621 (1143)
T ss_pred CCcccccCcchhHHHHHhcccch
Confidence 99999999999999999998764
|
|
| >PHA02989 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=236.51 Aligned_cols=241 Identities=13% Similarity=0.078 Sum_probs=201.2
Q ss_pred ChhHHHHHhcC--CChhHHHHHHHHHHhhhhcccCCchhhhhhhhcc------cchhhHHHHHHHHHhCchhhhccccCC
Q 043678 2 DLNFFKAASAG--NSEPFKDMARDVIESLLTAKAKNTILHINIISSE------RENVSTKFVEEILEKCPALLLQVNAKG 73 (303)
Q Consensus 2 ~~~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~------~~~~~~~~Ll~~~~~~~~~~~~~~~~g 73 (303)
.+||+.++..+ +.++|++|+++|++++..+. +.||||.| +.. +..+++++|++ .|++++.++..|
T Consensus 36 ~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~-~~tpL~~a--~~~~~~~~~~~~~iv~~Ll~----~Gadin~~d~~g 108 (494)
T PHA02989 36 NSILLLYLKRKDVKIKIVKLLIDNGADVNYKGY-IETPLCAV--LRNREITSNKIKKIVKLLLK----FGADINLKTFNG 108 (494)
T ss_pred CCHHHHHHhcCCCChHHHHHHHHcCCCccCCCC-CCCcHHHH--HhccCcchhhHHHHHHHHHH----CCCCCCCCCCCC
Confidence 36787655543 68999999999998877665 89999998 654 45689999998 899999999999
Q ss_pred CcHHHHHHHh---CCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhc--CcHHHHHhHhhCCc
Q 043678 74 DTPLHLAAKF---GHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSH--GNVDLFKLKKTNNL 148 (303)
Q Consensus 74 ~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~--~~~~~v~~L~~~~~ 148 (303)
.||||.|+.. ++.+++++|+++|++++ +..|..|+||||+|+.. ++.+++++|++.|+
T Consensus 109 ~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin-----------------~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Ga 171 (494)
T PHA02989 109 VSPIVCFIYNSNINNCDMLRFLLSKGINVN-----------------DVKNSRGYNLLHMYLESFSVKKDVIKILLSFGV 171 (494)
T ss_pred CcHHHHHHHhcccCcHHHHHHHHHCCCCcc-----------------cccCCCCCCHHHHHHHhccCCHHHHHHHHHcCC
Confidence 9999998765 67999999999999861 37789999999998764 58899999999999
Q ss_pred ceee-ecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCccccccc------------------
Q 043678 149 ILIF-RDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSN------------------ 209 (303)
Q Consensus 149 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~------------------ 209 (303)
++.. .+..|.+|++.+..... .....++++.|+++|.+ ++..+..+.|+++.+..
T Consensus 172 di~~~~~~~g~tpL~~a~~~~~-----~~~~~~iv~~Ll~~Ga~-vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~ 245 (494)
T PHA02989 172 NLFEKTSLYGLTPMNIYLRNDI-----DVISIKVIKYLIKKGVN-IETNNNGSESVLESFLDNNKILSKKEFKVLNFILK 245 (494)
T ss_pred CccccccccCCChHHHHHhccc-----ccccHHHHHHHHhCCCC-ccccCCccccHHHHHHHhchhhcccchHHHHHHHh
Confidence 9988 67789999887654321 12236899999999887 77888889999875331
Q ss_pred ----ccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcc
Q 043678 210 ----IADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273 (303)
Q Consensus 210 ----~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~ 273 (303)
...+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|++.++.++++.|++..
T Consensus 246 ~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad-in~~d~~G~TpL~~A~~~~~~~iv~~LL~~~ 312 (494)
T PHA02989 246 YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD-IYNVSKDGDTVLTYAIKHGNIDMLNRILQLK 312 (494)
T ss_pred CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 12235799999999999999999999999999 5899999999999999999999999998864
|
|
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=221.32 Aligned_cols=141 Identities=24% Similarity=0.221 Sum_probs=119.0
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~ 82 (303)
+||+.|+..|++++||.|+++|++++.+.....|||--| |.-|+.++++||++ +|++++..|..|.|.||+||.
T Consensus 86 ppLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraA--CfDG~leivKyLvE----~gad~~IanrhGhTcLmIa~y 159 (615)
T KOG0508|consen 86 PPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAA--CFDGHLEIVKYLVE----HGADPEIANRHGHTCLMIACY 159 (615)
T ss_pred chhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHH--HhcchhHHHHHHHH----cCCCCcccccCCCeeEEeeec
Confidence 688888888888888888888887776666678888888 88888888888887 788888888888888888888
Q ss_pred hCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhh
Q 043678 83 FGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNIL 162 (303)
Q Consensus 83 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~ 162 (303)
.|+.+|+++|++.|+++ |.++..|.|+||.++..|+.+++++|++.|+.+..... |.+|+.
T Consensus 160 kGh~~I~qyLle~gADv------------------n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~-GmtPL~ 220 (615)
T KOG0508|consen 160 KGHVDIAQYLLEQGADV------------------NAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGH-GMTPLL 220 (615)
T ss_pred cCchHHHHHHHHhCCCc------------------chhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCC-CCchHH
Confidence 88888888888888875 48888999999999999999999999999887665554 888888
Q ss_pred hhhccc
Q 043678 163 FKFRHL 168 (303)
Q Consensus 163 ~~~~~~ 168 (303)
.+....
T Consensus 221 ~Aa~tG 226 (615)
T KOG0508|consen 221 LAAVTG 226 (615)
T ss_pred HHhhhc
Confidence 776443
|
|
| >PHA02878 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=230.80 Aligned_cols=250 Identities=18% Similarity=0.114 Sum_probs=190.6
Q ss_pred HHHHHhcCCChhHHHHHHH----HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 5 FFKAASAGNSEPFKDMARD----VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 5 L~~A~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
|+.++..++.+.+...++. +.........+.||||+| +..|+.+++++|++ .|++++.++..|.||||+|
T Consensus 4 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A--~~~g~~e~vk~Ll~----~gadvn~~d~~g~TpLh~A 77 (477)
T PHA02878 4 LYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQA--VEARNLDVVKSLLT----RGHNVNQPDHRDLTPLHII 77 (477)
T ss_pred HHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHH--HHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHH
Confidence 5666777776556655555 111112223478999999 99999999999999 7999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
|..|+.+++++|++.+.... ...+.+|++.|+..++.+++++|+..+....... .
T Consensus 78 ~~~g~~~~v~~Ll~~~~~~~--------------------~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~-----~ 132 (477)
T PHA02878 78 CKEPNKLGMKEMIRSINKCS--------------------VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTI-----D 132 (477)
T ss_pred HHCccHhHHHHHHHHHhccc--------------------cccchhhHHHHHHcCCHHHHHHHHhCcccCcccC-----c
Confidence 99999999999999875432 2567899999999999999999886643211100 0
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhc-CCCcccccccc-----------------cccCCcccHHhH
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQY-GWTPIQSTSNI-----------------ADKDRKMTALHL 222 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~-g~t~l~~~~~~-----------------~~~~~~~t~L~~ 222 (303)
....... ........++++.|++.+.+ ++..+.. |.||||+|+.. .....|.||||.
T Consensus 133 ~~~~~~~----~~~~~~~~~iv~~Ll~~gad-in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~ 207 (477)
T PHA02878 133 LVYIDKK----SKDDIIEAEITKLLLSYGAD-INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHH 207 (477)
T ss_pred HHHHhhc----cchhhHHHHHHHHHHHcCCC-CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 0000000 00001124688899988877 7777877 99999987632 123578999999
Q ss_pred HHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHh-CCchhhHHHhhcccchhcccccCCC-CCCcHHHHHH
Q 043678 223 AAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVS-FHVGQLRNLLENNSLARSLIDEGDA-KGNTPLHVLA 295 (303)
Q Consensus 223 a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~-~~~~~~~~ll~~~~~~~~~~~~~d~-~g~tpL~~A~ 295 (303)
|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ++.++++.|++ .|++++.++. .|+||||+|+
T Consensus 208 A~~~~~~~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~----~gadvn~~~~~~g~TpLh~A~ 277 (477)
T PHA02878 208 AVKHYNKPIVHILLENGAS-TDARDKCGNTPLHISVGYCKDYDILKLLLE----HGVDVNAKSYILGLTALHSSI 277 (477)
T ss_pred HHHhCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhcCCHHHHHHHHH----cCCCCCccCCCCCCCHHHHHc
Confidence 9999999999999999999 589999999999999976 68888888887 5788898876 7999999994
|
|
| >PHA02798 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-32 Score=231.46 Aligned_cols=227 Identities=16% Similarity=0.133 Sum_probs=184.2
Q ss_pred ChhHHHHHhc-----CCChhHHHHHHHHHHhhhhcccCCchhhhhhhhccc---chhhHHHHHHHHHhCchhhhccccCC
Q 043678 2 DLNFFKAASA-----GNSEPFKDMARDVIESLLTAKAKNTILHINIISSER---ENVSTKFVEEILEKCPALLLQVNAKG 73 (303)
Q Consensus 2 ~~~L~~A~~~-----g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~---~~~~~~~Ll~~~~~~~~~~~~~~~~g 73 (303)
.||||.|+.. +..+++++|+++|++.+..+..|.||||+| +..+ +.+++++|++ .|++++.++..|
T Consensus 72 ~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a--~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g 145 (489)
T PHA02798 72 STPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCL--LSNGYINNLEILLFMIE----NGADTTLLDKDG 145 (489)
T ss_pred CChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHH--HHcCCcChHHHHHHHHH----cCCCccccCCCC
Confidence 5899998764 679999999999999888888899999999 7664 7899999998 899999999999
Q ss_pred CcHHHHHHHhCC---HHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccc-cCCCccHHHHHHhc----CcHHHHHhHhh
Q 043678 74 DTPLHLAAKFGH---FDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMV-NNEKNTALHEAVSH----GNVDLFKLKKT 145 (303)
Q Consensus 74 ~tpL~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~l~~A~~~----~~~~~v~~L~~ 145 (303)
.||||+|+..++ .+++++|+++|++++ .. +..|.||||.++.. ++.+++++|++
T Consensus 146 ~tpL~~a~~~~~~~~~~vv~~Ll~~gadin------------------~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~ 207 (489)
T PHA02798 146 FTMLQVYLQSNHHIDIEIIKLLLEKGVDIN------------------THNNKEKYDTLHCYFKYNIDRIDADILKLFVD 207 (489)
T ss_pred CcHHHHHHHcCCcchHHHHHHHHHhCCCcc------------------cccCcCCCcHHHHHHHhccccCCHHHHHHHHH
Confidence 999999999988 999999999998854 44 45789999998764 47899999999
Q ss_pred CCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHh
Q 043678 146 NNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAG 225 (303)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~ 225 (303)
.|+++...+..+.++++...... ..........++..++. +. .++.+|..|. ||||+|+.
T Consensus 208 ~Ga~i~~~~~~~~~~~~~~l~~l--~~~~~~~~~~i~~~l~~-~~-dvN~~d~~G~----------------TPL~~A~~ 267 (489)
T PHA02798 208 NGFIINKENKSHKKKFMEYLNSL--LYDNKRFKKNILDFIFS-YI-DINQVDELGF----------------NPLYYSVS 267 (489)
T ss_pred CCCCcccCCccccchHHHHHHHH--HhhcccchHHHHHHHHh-cC-CCCCcCcCCc----------------cHHHHHHH
Confidence 99999888877777655221110 00011122345555443 43 3676666555 55999999
Q ss_pred cCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcc
Q 043678 226 KGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273 (303)
Q Consensus 226 ~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~ 273 (303)
.|+.+++++|++.|++ ++.+|..|+||||+|++.++.++++.+++..
T Consensus 268 ~~~~~~v~~LL~~GAd-in~~d~~G~TpL~~A~~~~~~~iv~~lL~~~ 314 (489)
T PHA02798 268 HNNRKIFEYLLQLGGD-INIITELGNTCLFTAFENESKFIFNSILNKK 314 (489)
T ss_pred cCcHHHHHHHHHcCCc-ccccCCCCCcHHHHHHHcCcHHHHHHHHccC
Confidence 9999999999999999 5999999999999999999999988888764
|
|
| >PHA02859 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-31 Score=198.47 Aligned_cols=176 Identities=16% Similarity=0.128 Sum_probs=144.1
Q ss_pred ccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhC--CHHHHHHHHHHhHHhhcCchHHHHH
Q 043678 32 KAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFG--HFDIVRVLIERAKLAQRGDEELENR 109 (303)
Q Consensus 32 ~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~ 109 (303)
+.+.||||+| +..|+.+.++.|++ . .+..+..|.||||+|+..+ +.+++++|+++|++++
T Consensus 19 ~~~~~pL~~A--~~~~~~~~vk~Li~----~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn--------- 80 (209)
T PHA02859 19 YRYCNPLFYY--VEKDDIEGVKKWIK----F---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVN--------- 80 (209)
T ss_pred hccCcHHHHH--HHhCcHHHHHHHHH----h---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCC---------
Confidence 3479999999 99999999999987 2 4567889999999999864 8999999999998854
Q ss_pred HHHhhhhhcccc-CCCccHHHHHHhc---CcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHH
Q 043678 110 IEAFRQMIRMVN-NEKNTALHEAVSH---GNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKL 185 (303)
Q Consensus 110 ~~~~~~~~~~~~-~~~~t~l~~A~~~---~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (303)
.++ ..|.||||+|+.. ++.+++++|++.|++
T Consensus 81 ---------~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad------------------------------------ 115 (209)
T PHA02859 81 ---------FKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSS------------------------------------ 115 (209)
T ss_pred ---------ccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCC------------------------------------
Confidence 665 5799999998754 367777777777665
Q ss_pred HHhccchhchhhhcCCCcccccccccccCCcccHHhHHHh--cCCHHHHHHHhhcCCcccccccCCCChHHHH-HHHhCC
Q 043678 186 LEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAG--KGDARTVERIISENPKCYELVDNRGWNFLHY-AMVSFH 262 (303)
Q Consensus 186 l~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~--~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~-A~~~~~ 262 (303)
++..+..| .||||+|+. .++.+++++|+++|++ ++.+|..|.||||. |+..++
T Consensus 116 -------in~~d~~G----------------~TpLh~a~~~~~~~~~iv~~Li~~gad-in~~d~~g~t~Lh~~a~~~~~ 171 (209)
T PHA02859 116 -------ITEEDEDG----------------KNLLHMYMCNFNVRINVIKLLIDSGVS-FLNKDFDNNNILYSYILFHSD 171 (209)
T ss_pred -------CCCcCCCC----------------CCHHHHHHHhccCCHHHHHHHHHcCCC-cccccCCCCcHHHHHHHhcCC
Confidence 44444444 455888775 4689999999999999 58899999999995 566788
Q ss_pred chhhHHHhhcccchhcccccCCCCCCcHHHHHHhcC
Q 043678 263 VGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVR 298 (303)
Q Consensus 263 ~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~ 298 (303)
.+++++|++ .|++++.+|..|+||||+|+..+
T Consensus 172 ~~iv~~Ll~----~Gadi~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 172 KKIFDFLTS----LGIDINETNKSGYNCYDLIKFRN 203 (209)
T ss_pred HHHHHHHHH----cCCCCCCCCCCCCCHHHHHhhhh
Confidence 888887777 57889999999999999998764
|
|
| >KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-32 Score=238.78 Aligned_cols=287 Identities=22% Similarity=0.253 Sum_probs=228.5
Q ss_pred hHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHh
Q 043678 4 NFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF 83 (303)
Q Consensus 4 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~ 83 (303)
+++.|...++.++++.+....++....+..|.||+|.| +..+..+++..++. .|+++...+..|.||||.|+..
T Consensus 179 ~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~tpl~~a--~~~nri~~~eLll~----~gadv~a~d~~gl~~lh~a~~~ 252 (1143)
T KOG4177|consen 179 RLHVAAHCGHARVAKLLLDKKADPNASALNGFTPLHIA--CKKNRIKVVELLLK----HGADVSAKDESGLTPLHVAAFM 252 (1143)
T ss_pred hhhHHhhcchHHHHhhhhcccCCccccccCCCCchhhh--ccccccceeeeeee----ccCcCCcccccCccHHHHHHhc
Confidence 56889999999999999999888878888899999999 99999999999998 8999999999999999999999
Q ss_pred CCHHHHHHHHHHhHHhhcCch---------------HHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCc
Q 043678 84 GHFDIVRVLIERAKLAQRGDE---------------ELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNL 148 (303)
Q Consensus 84 ~~~~~v~~Ll~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 148 (303)
|+.+++.+|+.+|+.++..+- +..+.+......+..++....||+|.|...|..++++++++.+.
T Consensus 253 g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~ 332 (1143)
T KOG4177|consen 253 GHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGA 332 (1143)
T ss_pred cchhHHHHHHhcccccCcccccccCcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccC
Confidence 999999999999987753332 23334444556777888889999999999999999999999998
Q ss_pred ceeeecccccchhhhhhccchhHH---------------------hh---hhhHHHHHHHHHHhccchhchhhhcCCCcc
Q 043678 149 ILIFRDSDEKTNILFKFRHLDLFR---------------------IQ---TNSIYAALPKLLEKKKNLIKETDQYGWTPI 204 (303)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~---~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l 204 (303)
.+...+..+.++++.+........ .+ .....+.++.++..+.. ++.....|.||+
T Consensus 333 ~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~-~~~~gk~gvTpl 411 (1143)
T KOG4177|consen 333 TPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGAD-PNSAGKNGVTPL 411 (1143)
T ss_pred CccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhccCC-cccCCCCCccee
Confidence 888888888888887764443320 01 11115666677776666 777777788887
Q ss_pred cccc---------------------------------cc------------------cccCCcccHHhHHHhcCCHHHHH
Q 043678 205 QSTS---------------------------------NI------------------ADKDRKMTALHLAAGKGDARTVE 233 (303)
Q Consensus 205 ~~~~---------------------------------~~------------------~~~~~~~t~L~~a~~~~~~~~v~ 233 (303)
|.++ .. .....|.||||.|+..|+.++++
T Consensus 412 h~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~ 491 (1143)
T KOG4177|consen 412 HVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQ 491 (1143)
T ss_pred eehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHH
Confidence 7443 00 11147778888887777777666
Q ss_pred HHhhcC---------------------------------CcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhccc
Q 043678 234 RIISEN---------------------------------PKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLI 280 (303)
Q Consensus 234 ~Ll~~g---------------------------------~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~ 280 (303)
.|++.+ ++ .+.++..|.||||.|+.+|+..++++|++ +|+++
T Consensus 492 llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~-v~~~~~r~~TpLh~A~~~g~v~~VkfLLe----~gAdv 566 (1143)
T KOG4177|consen 492 LLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGAN-VDLRTGRGYTPLHVAVHYGNVDLVKFLLE----HGADV 566 (1143)
T ss_pred HhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCc-eehhcccccchHHHHHhcCCchHHHHhhh----CCccc
Confidence 666644 33 26777789999999999999999999888 58889
Q ss_pred ccCCCCCCcHHHHHHhcCCCCC
Q 043678 281 DEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 281 ~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+.+|+.|+||||.|+..|+.++
T Consensus 567 ~ak~~~G~TPLH~Aa~~G~~~i 588 (1143)
T KOG4177|consen 567 NAKDKLGYTPLHQAAQQGHNDI 588 (1143)
T ss_pred cccCCCCCChhhHHHHcChHHH
Confidence 9999999999999999997654
|
|
| >KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=217.19 Aligned_cols=182 Identities=25% Similarity=0.216 Sum_probs=159.7
Q ss_pred CCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHh
Q 043678 34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAF 113 (303)
Q Consensus 34 g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 113 (303)
-.+.++.| +..|..+.++.|++- .+.+++..|.+|.|+||||+.+++.+++++|+++|++++
T Consensus 44 ~~~~~v~A--~q~G~l~~v~~lve~---~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn------------- 105 (600)
T KOG0509|consen 44 SLDDIVKA--TQYGELETVKELVES---EGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVN------------- 105 (600)
T ss_pred hhhhhhhH--hhcchHHHHHHHHhh---cCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCcc-------------
Confidence 45678899 999999999999982 399999999999999999999999999999999999865
Q ss_pred hhhhcccc-CCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 114 RQMIRMVN-NEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 114 ~~~~~~~~-~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
... .-+.||||+|+++|+..+|.+|++.|+++..+|.
T Consensus 106 -----~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~------------------------------------- 143 (600)
T KOG0509|consen 106 -----AIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDK------------------------------------- 143 (600)
T ss_pred -----ccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecC-------------------------------------
Confidence 555 5689999999999999999999999987544444
Q ss_pred hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 193 ~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
+ |.+|+|.|++.|+..+|-+||.+|++ ++.+|.+|+||||+|+.+|....+..|++.
T Consensus 144 ------~----------------G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~f 200 (600)
T KOG0509|consen 144 ------Q----------------GLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLKF 200 (600)
T ss_pred ------C----------------CCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHHh
Confidence 3 34669999999999999999999998 699999999999999999997767777775
Q ss_pred ccchhcccccCC-CCCCcHHHHHHhcCCCCC
Q 043678 273 NSLARSLIDEGD-AKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 273 ~~~~~~~~~~~d-~~g~tpL~~A~~~~~~~i 302 (303)
|+.+...| ..|+||||+|+..|+.+.
T Consensus 201 ----~a~~~~~d~~~g~TpLHwa~~~gN~~~ 227 (600)
T KOG0509|consen 201 ----GASLLLTDDNHGNTPLHWAVVGGNLTA 227 (600)
T ss_pred ----cccccccccccCCchHHHHHhcCCcce
Confidence 66688887 999999999999998764
|
|
| >PHA02792 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=219.01 Aligned_cols=261 Identities=14% Similarity=0.099 Sum_probs=189.4
Q ss_pred hHH-HHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhc-ccchhhHHHHHHHHHhCchh----------------
Q 043678 4 NFF-KAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISS-ERENVSTKFVEEILEKCPAL---------------- 65 (303)
Q Consensus 4 ~L~-~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~-~~~~~~~~~Ll~~~~~~~~~---------------- 65 (303)
+++ .|...|+.|+|++|+.+|++.+..+..|.+|+|+| +. .++.|++++|++ .|++
T Consensus 74 ~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya--~~~~~~~eivk~Ll~----~Gad~~~~~~~g~~~~~~~~ 147 (631)
T PHA02792 74 IFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYA--TTSNPNVDVFKLLLD----KGIPTCSNIQYGYKIIIEQI 147 (631)
T ss_pred HHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEe--ecCCCChHHHHHHHH----CCCCcccccccCcchhhhhc
Confidence 555 47788999999999999999887777689999999 76 599999999999 5643
Q ss_pred --------------------hhccccCCCcHHHHHHHhC-------CHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhc
Q 043678 66 --------------------LLQVNAKGDTPLHLAAKFG-------HFDIVRVLIERAKLAQRGDEELENRIEAFRQMIR 118 (303)
Q Consensus 66 --------------------~~~~~~~g~tpL~~A~~~~-------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (303)
++..+..|.||||+|+.++ +.++++.|+++|+++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~------------------ 209 (631)
T PHA02792 148 TRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR------------------ 209 (631)
T ss_pred ccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC------------------
Confidence 3355667999999999999 8999999999998854
Q ss_pred cccCCCccHHHHHHhcC--cHHHHHhHhhCCcc-------------eeeecccccc---------------hhhhhhccc
Q 043678 119 MVNNEKNTALHEAVSHG--NVDLFKLKKTNNLI-------------LIFRDSDEKT---------------NILFKFRHL 168 (303)
Q Consensus 119 ~~~~~~~t~l~~A~~~~--~~~~v~~L~~~~~~-------------~~~~~~~~~~---------------~~~~~~~~~ 168 (303)
..|..|.||||+|+.+. +.|++++|.+.... ...+..+... .+...+...
T Consensus 210 ~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~ 289 (631)
T PHA02792 210 YYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSL 289 (631)
T ss_pred ccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhh
Confidence 78889999999999999 78999998753221 1111111011 011111000
Q ss_pred ----hhHHh-----------------hhhhHHHHHHHHHHhccchhchhhhcCCCcccccc----------------ccc
Q 043678 169 ----DLFRI-----------------QTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTS----------------NIA 211 (303)
Q Consensus 169 ----~~~~~-----------------~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~----------------~~~ 211 (303)
..... ......++++.++++|..... ..+...++.++ ...
T Consensus 290 ~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r---~~~~n~~~~Aa~~gn~eIVelLIs~GADIN 366 (631)
T PHA02792 290 RNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR---FKHINKYFQKFDNRDPKVVEYILKNGNVVV 366 (631)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc---CCcchHHHHHHHcCCHHHHHHHHHcCCchh
Confidence 00000 011227888999999887421 11222333332 222
Q ss_pred cc-C--CcccHHhHHHhcCCH---HHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCC
Q 043678 212 DK-D--RKMTALHLAAGKGDA---RTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDA 285 (303)
Q Consensus 212 ~~-~--~~~t~L~~a~~~~~~---~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~ 285 (303)
.+ . .+.||||.|+..... +++++|+++|++ ++.+|..|+||||+|+..++.+++++|++ .|++++.+|.
T Consensus 367 ~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs----~GADIN~kD~ 441 (631)
T PHA02792 367 EDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLID----NGADINITTK 441 (631)
T ss_pred hhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHH----CCCCCCCcCC
Confidence 11 1 246999998776654 368899999999 58999999999999999999888877777 5888999999
Q ss_pred CCCcHHHHHHh
Q 043678 286 KGNTPLHVLAA 296 (303)
Q Consensus 286 ~g~tpL~~A~~ 296 (303)
.|+|||++|+.
T Consensus 442 ~G~TpL~~A~~ 452 (631)
T PHA02792 442 YGSTCIGICVI 452 (631)
T ss_pred CCCCHHHHHHH
Confidence 99999999975
|
|
| >PHA02917 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=225.98 Aligned_cols=245 Identities=18% Similarity=0.128 Sum_probs=183.8
Q ss_pred ChhHHHHHHHHHHhhhhcccCCchhhhhhh-hcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHH----H
Q 043678 14 SEPFKDMARDVIESLLTAKAKNTILHINII-SSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFD----I 88 (303)
Q Consensus 14 ~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~-~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~----~ 88 (303)
++.|+.|+.++......|.+|.||||+||. +..|+.+++++|++ .|++++..+..|.||||+|+..|+.+ +
T Consensus 12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~----~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~ 87 (661)
T PHA02917 12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLD----SGTNPLHKNWRQLTPLEEYTNSRHVKVNKDI 87 (661)
T ss_pred HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHH----CCCCccccCCCCCCHHHHHHHcCChhHHHHH
Confidence 577888887766555667779999999733 33388999999998 89999999999999999999999854 5
Q ss_pred HHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccc
Q 043678 89 VRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHL 168 (303)
Q Consensus 89 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (303)
++.|++.+...+ ..+ ..+++++|+.+++.++|++|++.|++++..+..|.++++.+....
T Consensus 88 ~~~Ll~~~~~~n------------------~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~ 147 (661)
T PHA02917 88 AMALLEATGYSN------------------IND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTD 147 (661)
T ss_pred HHHHHhccCCCC------------------CCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHcc
Confidence 677776543221 222 236778899999999999999999999999999999988543210
Q ss_pred hhHHhhhhhHHHHHHHHHHhccchhchhhh---cCCCcccccccccccCCcccHHhHHHh-----------cCCHHHHHH
Q 043678 169 DLFRIQTNSIYAALPKLLEKKKNLIKETDQ---YGWTPIQSTSNIADKDRKMTALHLAAG-----------KGDARTVER 234 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~---~g~t~l~~~~~~~~~~~~~t~L~~a~~-----------~~~~~~v~~ 234 (303)
....++++.|+++|.+ ++..+. .|.+. ...+...+.||||+|+. .++.+++++
T Consensus 148 -------~~~~eivklLi~~Ga~-vn~~d~~~~~g~~~-----~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~ 214 (661)
T PHA02917 148 -------DPVPEIIDLFIENGCS-VLYEDEDDEYGYAY-----DDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKC 214 (661)
T ss_pred -------CCCHHHHHHHHHcCCC-cccccccccccccc-----ccccccccccHHHHHHhhcccccccccccCcHHHHHH
Confidence 1226899999999887 444433 34322 11112256799999986 468999999
Q ss_pred HhhcCCcccccccCCCChHHHHHHHhCCc--hhhHHHhhcccchhcccccCCCCCCcHHHHHHhc
Q 043678 235 IISENPKCYELVDNRGWNFLHYAMVSFHV--GQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAV 297 (303)
Q Consensus 235 Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~--~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~ 297 (303)
|+++|++ ++.+|..|.||||+|++.|+. ++++.|++ +....+..+..|..|.+|+++|++.
T Consensus 215 Li~~Gad-vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl 277 (661)
T PHA02917 215 LINHGIK-PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYL 277 (661)
T ss_pred HHHCCCC-cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHH
Confidence 9999999 599999999999999999986 68888764 3322222235677899999999964
|
|
| >PHA02859 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-30 Score=193.27 Aligned_cols=173 Identities=14% Similarity=0.074 Sum_probs=143.9
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcc--cchhhHHHHHHHHHhCchhhhccc-cCCCcHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSE--RENVSTKFVEEILEKCPALLLQVN-AKGDTPLH 78 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~--~~~~~~~~Ll~~~~~~~~~~~~~~-~~g~tpL~ 78 (303)
.+||+.|+..|+.+.|+.|++. + ...+..|.||||+| +.. ++.+++++|++ .|++++.++ ..|.||||
T Consensus 22 ~~pL~~A~~~~~~~~vk~Li~~-~--n~~~~~g~TpLh~a--~~~~~~~~eiv~~Ll~----~gadvn~~~~~~g~TpLh 92 (209)
T PHA02859 22 CNPLFYYVEKDDIEGVKKWIKF-V--NDCNDLYETPIFSC--LEKDKVNVEILKFLIE----NGADVNFKTRDNNLSALH 92 (209)
T ss_pred CcHHHHHHHhCcHHHHHHHHHh-h--hccCccCCCHHHHH--HHcCCCCHHHHHHHHH----CCCCCCccCCCCCCCHHH
Confidence 4799999999999999999976 2 24556699999999 654 58999999999 899999997 48999999
Q ss_pred HHHHh---CCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHh--cCcHHHHHhHhhCCcceeee
Q 043678 79 LAAKF---GHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVS--HGNVDLFKLKKTNNLILIFR 153 (303)
Q Consensus 79 ~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~--~~~~~~v~~L~~~~~~~~~~ 153 (303)
+|+.. ++.+++++|+++|++++ .+|..|.||||+|+. .++.+++++|++.|++
T Consensus 93 ~a~~~~~~~~~eiv~~Ll~~gadin------------------~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad---- 150 (209)
T PHA02859 93 HYLSFNKNVEPEILKILIDSGSSIT------------------EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS---- 150 (209)
T ss_pred HHHHhCccccHHHHHHHHHCCCCCC------------------CcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC----
Confidence 98864 47999999999998854 889999999999876 4578888887777765
Q ss_pred cccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhH-HHhcCCHHHH
Q 043678 154 DSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHL-AAGKGDARTV 232 (303)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~-a~~~~~~~~v 232 (303)
++..|.+| .||||. ++..++.+++
T Consensus 151 ---------------------------------------in~~d~~g----------------~t~Lh~~a~~~~~~~iv 175 (209)
T PHA02859 151 ---------------------------------------FLNKDFDN----------------NNILYSYILFHSDKKIF 175 (209)
T ss_pred ---------------------------------------cccccCCC----------------CcHHHHHHHhcCCHHHH
Confidence 33344444 466885 5667899999
Q ss_pred HHHhhcCCcccccccCCCChHHHHHHHhC
Q 043678 233 ERIISENPKCYELVDNRGWNFLHYAMVSF 261 (303)
Q Consensus 233 ~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~ 261 (303)
++|+++|++ ++.+|..|+||||+|...+
T Consensus 176 ~~Ll~~Gad-i~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 176 DFLTSLGID-INETNKSGYNCYDLIKFRN 203 (209)
T ss_pred HHHHHcCCC-CCCCCCCCCCHHHHHhhhh
Confidence 999999999 5899999999999998764
|
|
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=203.61 Aligned_cols=212 Identities=21% Similarity=0.270 Sum_probs=154.2
Q ss_pred HHHHhcCCChhHHHHHHHH----HHh-hhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhcc-----ccCCCc
Q 043678 6 FKAASAGNSEPFKDMARDV----IES-LLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQV-----NAKGDT 75 (303)
Q Consensus 6 ~~A~~~g~~~~v~~ll~~~----~~~-~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~-----~~~g~t 75 (303)
..|++.|.+..+..|+-.. +.. .-....|.|||-.| +++|+.+++++|++.+...+...... ...|-+
T Consensus 9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~ia--aRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegap 86 (615)
T KOG0508|consen 9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIA--ARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAP 86 (615)
T ss_pred HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeee--hhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCc
Confidence 3788899998888887662 211 13344588999999 99999999999999754433332233 335779
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecc
Q 043678 76 PLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDS 155 (303)
Q Consensus 76 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~ 155 (303)
||..|+..||.++|+.|+++|++++ .......|||--||..|++++|++|+++|++++..++
T Consensus 87 pLWaAsaAGHl~vVk~L~~~ga~VN------------------~tT~TNStPLraACfDG~leivKyLvE~gad~~Ianr 148 (615)
T KOG0508|consen 87 PLWAASAAGHLEVVKLLLRRGASVN------------------DTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANR 148 (615)
T ss_pred hhhHHhccCcHHHHHHHHHhcCccc------------------cccccCCccHHHHHhcchhHHHHHHHHcCCCCccccc
Confidence 9999999999999999999998754 6666778999999999999999999999998776666
Q ss_pred cccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHH
Q 043678 156 DEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERI 235 (303)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~L 235 (303)
.|. |.||+||.+|+.+++++|
T Consensus 149 hGh-----------------------------------------------------------TcLmIa~ykGh~~I~qyL 169 (615)
T KOG0508|consen 149 HGH-----------------------------------------------------------TCLMIACYKGHVDIAQYL 169 (615)
T ss_pred CCC-----------------------------------------------------------eeEEeeeccCchHHHHHH
Confidence 544 446666666777777777
Q ss_pred hhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 236 ISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 236 l~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
++.|+|+ |.++..|+|+||.+++.|+.++++.|++++ +.+.. |..|.|||..|+..|+.++
T Consensus 170 le~gADv-n~ks~kGNTALH~caEsG~vdivq~Ll~~g----a~i~~-d~~GmtPL~~Aa~tG~~~i 230 (615)
T KOG0508|consen 170 LEQGADV-NAKSYKGNTALHDCAESGSVDIVQLLLKHG----AKIDV-DGHGMTPLLLAAVTGHTDI 230 (615)
T ss_pred HHhCCCc-chhcccCchHHHhhhhcccHHHHHHHHhCC----ceeee-cCCCCchHHHHhhhcchHH
Confidence 7777763 666667777777777777766666666643 22332 4456777777666666543
|
|
| >PHA02795 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-29 Score=201.30 Aligned_cols=193 Identities=10% Similarity=-0.050 Sum_probs=152.7
Q ss_pred HHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhh------ccccCCCcHHHHHHH--hCCHHHH
Q 043678 18 KDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLL------QVNAKGDTPLHLAAK--FGHFDIV 89 (303)
Q Consensus 18 ~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~------~~~~~g~tpL~~A~~--~~~~~~v 89 (303)
++++.+|.+.+....+| +| +..+..|++++|+. .|+.++ .++..++|+||+++. .|+.++|
T Consensus 66 ~~~~~~~~~i~~~~~~~-----~~--~~~~~k~~~~~l~s----~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV 134 (437)
T PHA02795 66 DYFRIHRDNIDQYIVDR-----LF--AYITYKDIISALVS----KNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIV 134 (437)
T ss_pred HHHHHcCcchhhhhhhh-----HH--hhcchHHHHHHHHh----cccccchhhhhhhccccccHHHHHHHHhcCCCHHHH
Confidence 45555555544333333 78 88888899999988 688777 677788999999998 7889999
Q ss_pred HHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccch
Q 043678 90 RVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLD 169 (303)
Q Consensus 90 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (303)
++|+++|++++ . ..+.||+|.|+..++.+++++|++.|++...
T Consensus 135 ~~LI~~GADIn------------------~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n----------------- 177 (437)
T PHA02795 135 DFMVDHGAVIY------------------K--IECLNAYFRGICKKESSVVEFILNCGIPDEN----------------- 177 (437)
T ss_pred HHHHHCCCCCC------------------C--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccc-----------------
Confidence 99999998864 3 3457899999999999999988888763211
Q ss_pred hHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCC
Q 043678 170 LFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNR 249 (303)
Q Consensus 170 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~ 249 (303)
.+.+|++.. .+.+++|.|...++.+++++|+++|++ ++.+|..
T Consensus 178 -----------------------------~~~~~l~~~-------~~~t~l~~a~~~~~~eIve~LIs~GAD-IN~kD~~ 220 (437)
T PHA02795 178 -----------------------------DVKLDLYKI-------IQYTRGFLVDEPTVLEIYKLCIPYIED-INQLDAG 220 (437)
T ss_pred -----------------------------cccchhhhh-------hccchhHHHHhcCHHHHHHHHHhCcCC-cCcCCCC
Confidence 011111100 355779999999999999999999999 5999999
Q ss_pred CChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCC
Q 043678 250 GWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRP 299 (303)
Q Consensus 250 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~ 299 (303)
|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+
T Consensus 221 G~TpLh~Aa~~g~~eiVelLL~----~GAdIN~~d~~G~TpLh~Aa~~g~ 266 (437)
T PHA02795 221 GRTLLYRAIYAGYIDLVSWLLE----NGANVNAVMSNGYTCLDVAVDRGS 266 (437)
T ss_pred CCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCC
Confidence 9999999999999888888887 588899999999999999999985
|
|
| >PHA02792 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-28 Score=203.51 Aligned_cols=292 Identities=10% Similarity=0.029 Sum_probs=200.6
Q ss_pred hhHHHHHhcCCC-hhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 3 LNFFKAASAGNS-EPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 3 ~~L~~A~~~g~~-~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
|||+.-..+.+. .-++.++.-+.+....+-+|.+++|+-| ...|+.|++++|+. +|++++.++..|.||+|+|+
T Consensus 39 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~-s~n~~lElvk~LI~----~GAdvN~~~n~~~~~l~ya~ 113 (631)
T PHA02792 39 TPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLC-SDNIDIELLKLLIS----KGLEINSIKNGINIVEKYAT 113 (631)
T ss_pred ccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHH-HhcccHHHHHHHHH----cCCCcccccCCCCcceeEee
Confidence 566655444442 3334444445545555556888998874 67789999999999 89999999999999999997
Q ss_pred H-hCCHHHHHHHHHHhHHhhcCchH----HHHHH--------------HHhhhhhccccCCCccHHHHHHhcC-------
Q 043678 82 K-FGHFDIVRVLIERAKLAQRGDEE----LENRI--------------EAFRQMIRMVNNEKNTALHEAVSHG------- 135 (303)
Q Consensus 82 ~-~~~~~~v~~Ll~~~~~~~~~~~~----~~~~~--------------~~~~~~~~~~~~~~~t~l~~A~~~~------- 135 (303)
. .++.+++++|+++|+++...... +...+ ..+...++..|..|.||||+|+.++
T Consensus 114 ~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~ 193 (631)
T PHA02792 114 TSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYAT 193 (631)
T ss_pred cCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccC
Confidence 6 69999999999999875321110 11110 1123457788999999999999999
Q ss_pred cHHHHHhHhhCCcceeeecccccchhhhhhccc--h--hHHhhhh--------------------------hHHHHHHHH
Q 043678 136 NVDLFKLKKTNNLILIFRDSDEKTNILFKFRHL--D--LFRIQTN--------------------------SIYAALPKL 185 (303)
Q Consensus 136 ~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~--------------------------~~~~~~~~l 185 (303)
+.++++.|+++|++++..+..|.++++++..+. + ....... .-..++..|
T Consensus 194 ~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~l 273 (631)
T PHA02792 194 SLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKL 273 (631)
T ss_pred CHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHH
Confidence 899999999999999999999999999988665 1 1111000 002233333
Q ss_pred HHhccc--hhchhhhcC--CCc--------------cc------------------ccccccccCCcccHHhHHHhcCCH
Q 043678 186 LEKKKN--LIKETDQYG--WTP--------------IQ------------------STSNIADKDRKMTALHLAAGKGDA 229 (303)
Q Consensus 186 l~~~~~--~~~~~~~~g--~t~--------------l~------------------~~~~~~~~~~~~t~L~~a~~~~~~ 229 (303)
++.+.. ......... .+. |+ ..+.. .+.....+++.|+..|+.
T Consensus 274 l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~-~r~~~~n~~~~Aa~~gn~ 352 (631)
T PHA02792 274 LSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATL-YRFKHINKYFQKFDNRDP 352 (631)
T ss_pred HhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcc-ccCCcchHHHHHHHcCCH
Confidence 333220 000000000 000 00 00011 122456778999999999
Q ss_pred HHHHHHhhcCCcccccccCCC--ChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 230 RTVERIISENPKCYELVDNRG--WNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 230 ~~v~~Ll~~g~~~~~~~~~~g--~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+++++|+++|++ ++.+|..| .||||+|......+ +..+++.++..|++++.+|..|+||||+|+..++.++
T Consensus 353 eIVelLIs~GAD-IN~kD~~g~~~TpLh~A~~n~~~~-v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~ei 425 (631)
T PHA02792 353 KVVEYILKNGNV-VVEDDDNIINIMPLFPTLSIHESD-VLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSL 425 (631)
T ss_pred HHHHHHHHcCCc-hhhhcCCCCChhHHHHHHHhccHh-HHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHH
Confidence 999999999999 58888775 69999877665543 3455666666899999999999999999999887653
|
|
| >TIGR00870 trp transient-receptor-potential calcium channel protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-28 Score=216.93 Aligned_cols=239 Identities=18% Similarity=0.097 Sum_probs=170.3
Q ss_pred ChhHHHHHhcCCChhHHHHHHH--HHHhhhhcccCCchhh-hhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARD--VIESLLTAKAKNTILH-INIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLH 78 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~Lh-~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~ 78 (303)
+.+|+.|+..|+.+.++.++++ +.+.+..|..|.|||| .| +..++.++++.|++ .+. .+..|.||||
T Consensus 18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A--~~~~~~eiv~lLl~----~g~----~~~~G~T~Lh 87 (743)
T TIGR00870 18 EKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAA--IENENLELTELLLN----LSC----RGAVGDTLLH 87 (743)
T ss_pred HHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHH--HhcChHHHHHHHHh----CCC----CCCcChHHHH
Confidence 4688999999999999999999 7777777888999999 78 88899999999988 554 6778999999
Q ss_pred HHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeeccccc
Q 043678 79 LAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEK 158 (303)
Q Consensus 79 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~ 158 (303)
+|+. +..+.++.++............. ..........+..|.||||+|+.+|+.+++++|++.|++++.++....
T Consensus 88 ~A~~-~~~~~v~~ll~~l~~~~~~~~~~----~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~ 162 (743)
T TIGR00870 88 AISL-EYVDAVEAILLHLLAAFRKSGPL----ELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDF 162 (743)
T ss_pred HHHh-ccHHHHHHHHHHHhhcccccCch----hhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCch
Confidence 9987 33444444444332211100000 000000112345799999999999999999999999998774433221
Q ss_pred chhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhc
Q 043678 159 TNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE 238 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~ 238 (303)
.. . ....+. ...|.||||.|+..|+.+++++|+++
T Consensus 163 ~~--------------------------~-----~~~~~~--------------~~~g~tpL~~Aa~~~~~~iv~lLl~~ 197 (743)
T TIGR00870 163 FV--------------------------K-----SQGVDS--------------FYHGESPLNAAACLGSPSIVALLSED 197 (743)
T ss_pred hh--------------------------c-----CCCCCc--------------ccccccHHHHHHHhCCHHHHHHHhcC
Confidence 00 0 000000 01567889999999999999999999
Q ss_pred CCcccccccCCCChHHHHHHHhC-----Cch----hhHHHhhcccchhccc----ccCCCCCCcHHHHHHhcCCCCC
Q 043678 239 NPKCYELVDNRGWNFLHYAMVSF-----HVG----QLRNLLENNSLARSLI----DEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 239 g~~~~~~~~~~g~tpl~~A~~~~-----~~~----~~~~ll~~~~~~~~~~----~~~d~~g~tpL~~A~~~~~~~i 302 (303)
|++ ++.+|..|+||||+|+..+ +.+ +.+.+++.+. ...+. +..|.+|.||||+|++.|+.++
T Consensus 198 gad-in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~-~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l 272 (743)
T TIGR00870 198 PAD-ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLD-KLRDSKELEVILNHQGLTPLKLAAKEGRIVL 272 (743)
T ss_pred Ccc-hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh-ccCChHhhhhhcCCCCCCchhhhhhcCCccH
Confidence 998 5899999999999999987 222 3333333322 12222 6679999999999999998874
|
after chronic exposure to capsaicin. (McCleskey and Gold, 1999). |
| >PHA02795 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-28 Score=197.27 Aligned_cols=194 Identities=13% Similarity=0.020 Sum_probs=156.3
Q ss_pred HHHhcCCChhHHHHHHHHHHhh------hhcccCCchhhhhhhhc--ccchhhHHHHHHHHHhCchhhhccccCCCcHHH
Q 043678 7 KAASAGNSEPFKDMARDVIESL------LTAKAKNTILHINIISS--ERENVSTKFVEEILEKCPALLLQVNAKGDTPLH 78 (303)
Q Consensus 7 ~A~~~g~~~~v~~ll~~~~~~~------~~~~~g~t~Lh~A~~~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~ 78 (303)
+|+..+..|++++|+.+|.+++ .++..++|+||.+ +. .|+.+++++|++ +|++++.. ++.||||
T Consensus 83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~--~~n~~n~~eiV~~LI~----~GADIn~~--~~~t~lh 154 (437)
T PHA02795 83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYY--LSNAYVEIDIVDFMVD----HGAVIYKI--ECLNAYF 154 (437)
T ss_pred HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHH--HHhcCCCHHHHHHHHH----CCCCCCCC--CCCCHHH
Confidence 6788899999999999988855 5666699999999 66 899999999999 89999874 4589999
Q ss_pred HHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeeccccc
Q 043678 79 LAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEK 158 (303)
Q Consensus 79 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~ 158 (303)
+|+..++.+++++|+++|++...... .+..+..+.+++|.|...++.+++++|++.|+++
T Consensus 155 ~A~~~~~~eIVk~Lls~Ga~~~n~~~------------~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-------- 214 (437)
T PHA02795 155 RGICKKESSVVEFILNCGIPDENDVK------------LDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-------- 214 (437)
T ss_pred HHHHcCcHHHHHHHHhcCCccccccc------------chhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc--------
Confidence 99999999999999999974321000 1112245779999999999999999988888763
Q ss_pred chhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhc
Q 043678 159 TNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE 238 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~ 238 (303)
+..+.. |.||||+|+..|+.+++++|+++
T Consensus 215 -----------------------------------N~kD~~----------------G~TpLh~Aa~~g~~eiVelLL~~ 243 (437)
T PHA02795 215 -----------------------------------NQLDAG----------------GRTLLYRAIYAGYIDLVSWLLEN 243 (437)
T ss_pred -----------------------------------CcCCCC----------------CCCHHHHHHHcCCHHHHHHHHHC
Confidence 344443 44669999999999999999999
Q ss_pred CCcccccccCCCChHHHHHHHhCC--------chhhHHHhhcccchhcccccCC
Q 043678 239 NPKCYELVDNRGWNFLHYAMVSFH--------VGQLRNLLENNSLARSLIDEGD 284 (303)
Q Consensus 239 g~~~~~~~~~~g~tpl~~A~~~~~--------~~~~~~ll~~~~~~~~~~~~~d 284 (303)
|++ ++.+|..|+||||+|+..|+ .++++.|++ .|++++..+
T Consensus 244 GAd-IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~----~gadI~~~~ 292 (437)
T PHA02795 244 GAN-VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLR----EPLSIDCIK 292 (437)
T ss_pred CCC-CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh----CCCCCCchh
Confidence 999 58999999999999999884 467777766 455555543
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=212.55 Aligned_cols=176 Identities=22% Similarity=0.224 Sum_probs=154.6
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
.+.++||.| +..|+.++++.|++ .|.+++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus 524 ~~~~~L~~A--a~~g~~~~l~~Ll~----~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi------------- 584 (823)
T PLN03192 524 NMASNLLTV--ASTGNAALLEELLK----AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV------------- 584 (823)
T ss_pred cchhHHHHH--HHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-------------
Confidence 367899999 99999999999998 89999999999999999999999999999999999875
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
+.+|.+|.||||+|+..|+.+++++|...+...
T Consensus 585 -----n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~------------------------------------------ 617 (823)
T PLN03192 585 -----HIRDANGNTALWNAISAKHHKIFRILYHFASIS------------------------------------------ 617 (823)
T ss_pred -----CCcCCCCCCHHHHHHHhCCHHHHHHHHhcCccc------------------------------------------
Confidence 488999999999999999999999976543310
Q ss_pred hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 193 ~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
+ ...+.++||.|+..|+.++++.|+++|++ ++.+|..|+||||+|+..|+.++++.|++
T Consensus 618 -~------------------~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G~TpLh~A~~~g~~~iv~~Ll~- 676 (823)
T PLN03192 618 -D------------------PHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQGATALQVAMAEDHVDMVRLLIM- 676 (823)
T ss_pred -C------------------cccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHHHHHHHHH-
Confidence 0 01345779999999999999999999999 58999999999999999999988888887
Q ss_pred ccchhcccccCCCCC-CcHHHHHHhcC
Q 043678 273 NSLARSLIDEGDAKG-NTPLHVLAAVR 298 (303)
Q Consensus 273 ~~~~~~~~~~~d~~g-~tpL~~A~~~~ 298 (303)
.|++++..|..| +||++++....
T Consensus 677 ---~GAdv~~~~~~g~~t~~~l~~~~~ 700 (823)
T PLN03192 677 ---NGADVDKANTDDDFSPTELRELLQ 700 (823)
T ss_pred ---cCCCCCCCCCCCCCCHHHHHHHHH
Confidence 578899999988 99999886543
|
|
| >KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-28 Score=172.28 Aligned_cols=205 Identities=19% Similarity=0.146 Sum_probs=151.8
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhh-hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHh
Q 043678 5 FFKAASAGNSEPFKDMARDVIESL-LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF 83 (303)
Q Consensus 5 L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~ 83 (303)
+-.+.+.|+.+.......-+++.. .++.+|+++++.+ +-.++...+...+. ++...|..+-.+++|+.+++..
T Consensus 66 ~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~--ap~~s~~k~sttlt----N~~rgnevs~~p~s~~slsVhq 139 (296)
T KOG0502|consen 66 LTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVA--APCGSVDKVSTTLT----NGARGNEVSLMPWSPLSLSVHQ 139 (296)
T ss_pred cchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhc--CCCCCcceeeeeec----ccccCCccccccCChhhHHHHH
Confidence 345777888888887776654433 3444589999999 88888888888887 7888888888899999999988
Q ss_pred CCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhh
Q 043678 84 GHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILF 163 (303)
Q Consensus 84 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~ 163 (303)
.+.+.+..+.++. +|..|+.|.|||.+|+..|+.++|++|+..|+++..-.+.
T Consensus 140 l~L~~~~~~~~n~--------------------VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~------- 192 (296)
T KOG0502|consen 140 LHLDVVDLLVNNK--------------------VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKY------- 192 (296)
T ss_pred HHHHHHHHHhhcc--------------------ccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhh-------
Confidence 8888887777654 6689999999999999999999999999998874333222
Q ss_pred hhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCccc
Q 043678 164 KFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCY 243 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~ 243 (303)
..++|..|++.|+.++|++||..+.+ +
T Consensus 193 ----------------------------------------------------resALsLAt~ggytdiV~lLL~r~vd-V 219 (296)
T KOG0502|consen 193 ----------------------------------------------------RESALSLATRGGYTDIVELLLTREVD-V 219 (296)
T ss_pred ----------------------------------------------------hhhhHhHHhcCChHHHHHHHHhcCCC-c
Confidence 23556677777777777777777766 3
Q ss_pred ccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCC
Q 043678 244 ELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRP 299 (303)
Q Consensus 244 ~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~ 299 (303)
|..|.+|.|||-||++.++.++++.|++ .|++++..|..|++++.+|+..|+
T Consensus 220 NvyDwNGgTpLlyAvrgnhvkcve~Ll~----sGAd~t~e~dsGy~~mdlAValGy 271 (296)
T KOG0502|consen 220 NVYDWNGGTPLLYAVRGNHVKCVESLLN----SGADVTQEDDSGYWIMDLAVALGY 271 (296)
T ss_pred ceeccCCCceeeeeecCChHHHHHHHHh----cCCCcccccccCCcHHHHHHHhhh
Confidence 6667777777777777777665555555 466667777777777777766665
|
|
| >KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-27 Score=193.94 Aligned_cols=249 Identities=23% Similarity=0.270 Sum_probs=204.2
Q ss_pred CChhHHHHHhcCCChhHHHHHHH-------------HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhh
Q 043678 1 MDLNFFKAASAGNSEPFKDMARD-------------VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLL 67 (303)
Q Consensus 1 ~~~~L~~A~~~g~~~~v~~ll~~-------------~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~ 67 (303)
+++.|..|++.|+.+.+..+++. ..+.+..|.+|.|+||-| +.+|+.++++.|++ +...++
T Consensus 3 k~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha--~Lng~~~is~llle----~ea~ld 76 (854)
T KOG0507|consen 3 KKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHA--VLNGQNQISKLLLD----YEALLD 76 (854)
T ss_pred hhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHH--HhcCchHHHHHHhc----chhhhh
Confidence 45678899999999999999987 123457788899999999 99999999999999 677888
Q ss_pred ccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCC
Q 043678 68 QVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN 147 (303)
Q Consensus 68 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~ 147 (303)
..+..|.+|||+|++.|+.++++.++..+.. +|+.+..|.||||.|++.|+.+++.+|+.++
T Consensus 77 l~d~kg~~plhlaaw~g~~e~vkmll~q~d~------------------~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ 138 (854)
T KOG0507|consen 77 LCDTKGILPLHLAAWNGNLEIVKMLLLQTDI------------------LNAVNIENETPLHLAAQHGHLEVVFYLLKKN 138 (854)
T ss_pred hhhccCcceEEehhhcCcchHHHHHHhcccC------------------CCcccccCcCccchhhhhcchHHHHHHHhcC
Confidence 8889999999999999999999999998743 5688999999999999999999999999999
Q ss_pred cceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcC
Q 043678 148 LILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKG 227 (303)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~ 227 (303)
.+...++.++.+++..+..-.. .+++..|+.. ++...... .++ .....-.+.+|||.|+++|
T Consensus 139 adp~i~nns~~t~ldlA~qfgr---------~~Vvq~ll~~--~~~~~~~~--~~~-----~~~~~~~~~~plHlaakng 200 (854)
T KOG0507|consen 139 ADPFIRNNSKETVLDLASRFGR---------AEVVQMLLQK--KFPVQSSL--RVG-----DIKRPFPAIYPLHLAAKNG 200 (854)
T ss_pred CCccccCcccccHHHHHHHhhh---------hHHHHHHhhh--ccchhhcc--cCC-----CCCCCCCCcCCcchhhhcc
Confidence 9999999999987766553322 4666777766 21111100 000 1222236788999999999
Q ss_pred CHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhc
Q 043678 228 DARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAV 297 (303)
Q Consensus 228 ~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~ 297 (303)
+.++++.|++.|-+ +|..... .|+||-|+.+|..+++++|++. |...+++|.+|.|+|++-...
T Consensus 201 h~~~~~~ll~ag~d-in~~t~~-gtalheaalcgk~evvr~ll~~----gin~h~~n~~~qtaldil~d~ 264 (854)
T KOG0507|consen 201 HVECMQALLEAGFD-INYTTED-GTALHEAALCGKAEVVRFLLEI----GINTHIKNQHGQTALDIIIDL 264 (854)
T ss_pred hHHHHHHHHhcCCC-ccccccc-chhhhhHhhcCcchhhhHHHhh----ccccccccccchHHHHHHHhc
Confidence 99999999999999 5755554 5999999999999999999994 667899999999999986543
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-26 Score=205.81 Aligned_cols=175 Identities=18% Similarity=0.215 Sum_probs=153.6
Q ss_pred CChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 1 MDLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 1 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
+.++|+.|+..|+.++++.|++.|++.+..|..|.||||+| +..|+.+++++|++ .|++++.+|.+|.||||+|
T Consensus 525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~A--a~~g~~~~v~~Ll~----~gadin~~d~~G~TpL~~A 598 (823)
T PLN03192 525 MASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIA--ASKGYEDCVLVLLK----HACNVHIRDANGNTALWNA 598 (823)
T ss_pred chhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcChHHHHHHHHh----cCCCCCCcCCCCCCHHHHH
Confidence 35789999999999999999999999888888899999999 99999999999999 7999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|++.++.. ....+.++||.|+..|+.+++++|++.|++
T Consensus 599 ~~~g~~~iv~~L~~~~~~~--------------------~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad----------- 647 (823)
T PLN03192 599 ISAKHHKIFRILYHFASIS--------------------DPHAAGDLLCTAAKRNDLTAMKELLKQGLN----------- 647 (823)
T ss_pred HHhCCHHHHHHHHhcCccc--------------------CcccCchHHHHHHHhCCHHHHHHHHHCCCC-----------
Confidence 9999999999999876542 234577999999999999999998888775
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
++..|.+ |.||||+|+..|+.+++++|+++|+
T Consensus 648 --------------------------------in~~d~~----------------G~TpLh~A~~~g~~~iv~~Ll~~GA 679 (823)
T PLN03192 648 --------------------------------VDSEDHQ----------------GATALQVAMAEDHVDMVRLLIMNGA 679 (823)
T ss_pred --------------------------------CCCCCCC----------------CCCHHHHHHHCCcHHHHHHHHHcCC
Confidence 3344443 4566999999999999999999999
Q ss_pred cccccccCCC-ChHHHHHHHhC
Q 043678 241 KCYELVDNRG-WNFLHYAMVSF 261 (303)
Q Consensus 241 ~~~~~~~~~g-~tpl~~A~~~~ 261 (303)
++ +..|..| .||++++....
T Consensus 680 dv-~~~~~~g~~t~~~l~~~~~ 700 (823)
T PLN03192 680 DV-DKANTDDDFSPTELRELLQ 700 (823)
T ss_pred CC-CCCCCCCCCCHHHHHHHHH
Confidence 95 8888888 99998876543
|
|
| >KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-26 Score=186.63 Aligned_cols=230 Identities=23% Similarity=0.281 Sum_probs=174.2
Q ss_pred hHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHh
Q 043678 4 NFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF 83 (303)
Q Consensus 4 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~ 83 (303)
.+..|+..|+.+-++.|+..|++.+..+-+|.|+||-+ +.-.+.+++++|++ .|+.++..|..|+||||.|+..
T Consensus 43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~--~id~~~e~v~~l~e----~ga~Vn~~d~e~wtPlhaaasc 116 (527)
T KOG0505|consen 43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQA--CIDDNLEMVKFLVE----NGANVNAQDNEGWTPLHAAASC 116 (527)
T ss_pred HHHhccccccHHHHHHHhccCCCccccCCccchhHHHH--HhcccHHHHHHHHH----hcCCccccccccCCcchhhccc
Confidence 35578889999999999999777766666699999999 88888999999998 7999999999999999999999
Q ss_pred CCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhH-hhCCcceeeecccccchhh
Q 043678 84 GHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLK-KTNNLILIFRDSDEKTNIL 162 (303)
Q Consensus 84 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L-~~~~~~~~~~~~~~~~~~~ 162 (303)
|+..++++|+++|++.. ..+..|..|...+..-...+++..- -..|+++........
T Consensus 117 g~~~i~~~li~~gA~~~------------------avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e---- 174 (527)
T KOG0505|consen 117 GYLNIVEYLIQHGANLL------------------AVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEE---- 174 (527)
T ss_pred ccHHHHHHHHHhhhhhh------------------hccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhH----
Confidence 99999999999998865 6777888888877766655555442 233333111111111
Q ss_pred hhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcc
Q 043678 163 FKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKC 242 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~ 242 (303)
.....-++..+..+.. ....+. .|.|.||.|+.+|+.++.++|+++|.++
T Consensus 175 -------------~~ml~D~~q~l~~G~~-~d~~~~----------------rG~T~lHvAaa~Gy~e~~~lLl~ag~~~ 224 (527)
T KOG0505|consen 175 -------------QTMLDDARQWLNAGAE-LDARHA----------------RGATALHVAAANGYTEVAALLLQAGYSV 224 (527)
T ss_pred -------------HHHHHHHHHHHhcccc-cccccc----------------ccchHHHHHHhhhHHHHHHHHHHhccCc
Confidence 1112223333332222 333222 4668899999999999999999999995
Q ss_pred cccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHh
Q 043678 243 YELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAA 296 (303)
Q Consensus 243 ~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~ 296 (303)
+.+|..||||||.|+..|+.+..+.|++ +|++.+.....|.||+.+|..
T Consensus 225 -~~~D~dgWtPlHAAA~Wg~~~~~elL~~----~ga~~d~~t~~g~~p~dv~de 273 (527)
T KOG0505|consen 225 -NIKDYDGWTPLHAAAHWGQEDACELLVE----HGADMDAKTKMGETPLDVADE 273 (527)
T ss_pred -ccccccCCCcccHHHHhhhHhHHHHHHH----hhcccchhhhcCCCCccchhh
Confidence 8999999999999999999777776665 688899999999999999865
|
|
| >KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-27 Score=166.94 Aligned_cols=198 Identities=20% Similarity=0.229 Sum_probs=166.4
Q ss_pred hHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHh
Q 043678 4 NFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF 83 (303)
Q Consensus 4 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~ 83 (303)
+++.|+-+|+.+.+..++.++...+..+..+++|+.++ +...+.+.+..+. ...+|..|..|.|||.||+..
T Consensus 99 ~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~sls--Vhql~L~~~~~~~------~n~VN~~De~GfTpLiWAaa~ 170 (296)
T KOG0502|consen 99 ALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLS--VHQLHLDVVDLLV------NNKVNACDEFGFTPLIWAAAK 170 (296)
T ss_pred hhhhcCCCCCcceeeeeecccccCCccccccCChhhHH--HHHHHHHHHHHHh------hccccCccccCchHhHHHHhc
Confidence 47778888999999999999876666666799999999 8777665555543 456789999999999999999
Q ss_pred CCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhh
Q 043678 84 GHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILF 163 (303)
Q Consensus 84 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~ 163 (303)
|+..+|++|++.|++++ ..-+...++|..|++.|..++|++|+.++++
T Consensus 171 G~i~vV~fLL~~GAdp~------------------~lgk~resALsLAt~ggytdiV~lLL~r~vd-------------- 218 (296)
T KOG0502|consen 171 GHIPVVQFLLNSGADPD------------------ALGKYRESALSLATRGGYTDIVELLLTREVD-------------- 218 (296)
T ss_pred CchHHHHHHHHcCCChh------------------hhhhhhhhhHhHHhcCChHHHHHHHHhcCCC--------------
Confidence 99999999999999975 6677889999999999999999998888776
Q ss_pred hhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCccc
Q 043678 164 KFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCY 243 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~ 243 (303)
++..|.+|-|| |.+|++.++.++++.||..|+++
T Consensus 219 -----------------------------VNvyDwNGgTp----------------LlyAvrgnhvkcve~Ll~sGAd~- 252 (296)
T KOG0502|consen 219 -----------------------------VNVYDWNGGTP----------------LLYAVRGNHVKCVESLLNSGADV- 252 (296)
T ss_pred -----------------------------cceeccCCCce----------------eeeeecCChHHHHHHHHhcCCCc-
Confidence 55666666544 88899999999999999999995
Q ss_pred ccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHH
Q 043678 244 ELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLH 292 (303)
Q Consensus 244 ~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~ 292 (303)
+..+..|.+++..|+..|+. +++.+++. -++...+|+.-.+|+|
T Consensus 253 t~e~dsGy~~mdlAValGyr-~Vqqvie~----h~lkl~Q~~~~~~~~~ 296 (296)
T KOG0502|consen 253 TQEDDSGYWIMDLAVALGYR-IVQQVIEK----HALKLCQDSEKRTPLH 296 (296)
T ss_pred ccccccCCcHHHHHHHhhhH-HHHHHHHH----HHHHHhhcccCCCCCC
Confidence 88999999999999999996 66666664 4556777877778775
|
|
| >KOG0514 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-24 Score=162.46 Aligned_cols=180 Identities=19% Similarity=0.227 Sum_probs=134.9
Q ss_pred chhhHHHHHHHHHhCc-----hhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccC
Q 043678 48 ENVSTKFVEEILEKCP-----ALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNN 122 (303)
Q Consensus 48 ~~~~~~~Ll~~~~~~~-----~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (303)
+++.|+-.+..+..-+ ..+|..|.+|+|+||||+..+++++|+.|++.|.-. ++.++.
T Consensus 238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~-----------------VD~qNr 300 (452)
T KOG0514|consen 238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCD-----------------VDQQNR 300 (452)
T ss_pred CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCccc-----------------cccccc
Confidence 4555555544443322 236778889999999999999999999999877532 558888
Q ss_pred CCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCC
Q 043678 123 EKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWT 202 (303)
Q Consensus 123 ~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t 202 (303)
.|+||+++++...-..- ....++..|+.-+. +|.+..
T Consensus 301 AGYtpiMLaALA~lk~~-------------------------------------~d~~vV~~LF~mgn--VNaKAs---- 337 (452)
T KOG0514|consen 301 AGYTPVMLAALAKLKQP-------------------------------------ADRTVVERLFKMGD--VNAKAS---- 337 (452)
T ss_pred ccccHHHHHHHHhhcch-------------------------------------hhHHHHHHHHhccC--cchhhh----
Confidence 99999998864321000 00123333333222 222211
Q ss_pred cccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhccccc
Q 043678 203 PIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDE 282 (303)
Q Consensus 203 ~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~ 282 (303)
..|.|+|+.|+..|..++|+.||.-|+|+ |++|.+|.|+|+.|+++||.|+++.|+.. -++|+..
T Consensus 338 -----------Q~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~---p~cd~sL 402 (452)
T KOG0514|consen 338 -----------QHGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAV---PSCDISL 402 (452)
T ss_pred -----------hhcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhcc---Cccccee
Confidence 25678899999999999999999999995 99999999999999999999999998876 5678899
Q ss_pred CCCCCCcHHHHHHhcCCCCC
Q 043678 283 GDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 283 ~d~~g~tpL~~A~~~~~~~i 302 (303)
.|.+|.|+|.+|-..|+.||
T Consensus 403 tD~DgSTAl~IAleagh~eI 422 (452)
T KOG0514|consen 403 TDVDGSTALSIALEAGHREI 422 (452)
T ss_pred ecCCCchhhhhHHhcCchHH
Confidence 99999999999999999886
|
|
| >KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-24 Score=183.33 Aligned_cols=281 Identities=14% Similarity=0.099 Sum_probs=215.7
Q ss_pred CChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhc-cccCCCcHHHH
Q 043678 1 MDLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQ-VNAKGDTPLHL 79 (303)
Q Consensus 1 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~g~tpL~~ 79 (303)
++|+|..||+.|+-|.+++|+.+|.+....|..|.+||..| +-.|+..+|+.|+. ..++++. .|+.+.|+|-+
T Consensus 757 ~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plIma--atagh~tvV~~llk----~ha~veaQsdrtkdt~lSl 830 (2131)
T KOG4369|consen 757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMA--ATAGHITVVQDLLK----AHADVEAQSDRTKDTMLSL 830 (2131)
T ss_pred ccccccccccCccHHHHHHHHHhcccccccccccchhhhhh--cccCchHHHHHHHh----hhhhhhhhcccccCceEEE
Confidence 47899999999999999999999998888888899999999 99999999999998 5555555 67789999999
Q ss_pred HHHhCCHHHHHHHHHHhHHhhcCchH---------------HHHHHHHhhhhhcc--ccCCCccHHHHHHhcCcHHHHHh
Q 043678 80 AAKFGHFDIVRVLIERAKLAQRGDEE---------------LENRIEAFRQMIRM--VNNEKNTALHEAVSHGNVDLFKL 142 (303)
Q Consensus 80 A~~~~~~~~v~~Ll~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--~~~~~~t~l~~A~~~~~~~~v~~ 142 (303)
||..|+.++|++||..|++-..+..+ +...+...+..++. -.+-|-+||..|..+|+.+.++.
T Consensus 831 acsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ 910 (2131)
T KOG4369|consen 831 ACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLS 910 (2131)
T ss_pred ecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHH
Confidence 99999999999999999875533221 22222222333332 23446667777777777777776
Q ss_pred HhhCCcceeeecccccc-hhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccc-----------
Q 043678 143 KKTNNLILIFRDSDEKT-NILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNI----------- 210 (303)
Q Consensus 143 L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~----------- 210 (303)
|++.|.+++.......+ .+..++ .....+.+..||....+ +..+...|.|||+..+..
T Consensus 911 ll~~gsdiNaqIeTNrnTaltla~---------fqgr~evv~lLLa~~an-vehRaktgltplme~AsgGyvdvg~~li~ 980 (2131)
T KOG4369|consen 911 LLQPGSDINAQIETNRNTALTLAL---------FQGRPEVVFLLLAAQAN-VEHRAKTGLTPLMEMASGGYVDVGNLLIA 980 (2131)
T ss_pred Hhcccchhccccccccccceeecc---------ccCcchHHHHHHHHhhh-hhhhcccCCcccchhhcCCccccchhhhh
Confidence 66666665544443222 221111 12225778888887777 888999999999855421
Q ss_pred --------cccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhccccc
Q 043678 211 --------ADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDE 282 (303)
Q Consensus 211 --------~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~ 282 (303)
.......|+|.+++..|+...++.|+...+.+ .+++.+|.|+|.+|+..|+...+..|++ +++|++.
T Consensus 981 ~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv-~v~NkkG~T~Lwla~~Gg~lss~~il~~----~~ad~d~ 1055 (2131)
T KOG4369|consen 981 AGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATV-RVPNKKGCTVLWLASAGGALSSCPILVS----SVADADQ 1055 (2131)
T ss_pred cccccccCCCCCcCCccceeecCCCchhhhHHhhCCccce-ecccCCCCcccchhccCCccccchHHhh----cccChhh
Confidence 11246778899999999999999999888884 8999999999999999999888888877 5788999
Q ss_pred CCCCCCcHHHHHHhcCCCCC
Q 043678 283 GDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 283 ~d~~g~tpL~~A~~~~~~~i 302 (303)
.|+.-.+++.-|.+.|+.+|
T Consensus 1056 qdnr~~S~~maafRKgh~~i 1075 (2131)
T KOG4369|consen 1056 QDNRTNSRTMAAFRKGHFAI 1075 (2131)
T ss_pred hhcccccccHHHHHhchhhe
Confidence 99999999999999999876
|
|
| >TIGR00870 trp transient-receptor-potential calcium channel protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-23 Score=183.59 Aligned_cols=201 Identities=19% Similarity=0.103 Sum_probs=138.1
Q ss_pred ChhHH-HHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchh------hh----ccc
Q 043678 2 DLNFF-KAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPAL------LL----QVN 70 (303)
Q Consensus 2 ~~~L~-~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~------~~----~~~ 70 (303)
.|||| .|+..++.++++.|++.+. .+..|.||||.| +. +..+.+..++.++...+.. .+ ...
T Consensus 53 ~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A--~~-~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 125 (743)
T TIGR00870 53 RSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAI--SL-EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEF 125 (743)
T ss_pred hhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHH--Hh-ccHHHHHHHHHHHhhcccccCchhhhcccccccc
Confidence 47999 8999999999999999875 455599999999 65 3344455555443333311 11 123
Q ss_pred cCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcce
Q 043678 71 AKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLIL 150 (303)
Q Consensus 71 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~ 150 (303)
..|.||||+|+..|+.++|++|+++|++++....... . . ..........|.||||.|+..|+.+++++|++.|++
T Consensus 126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~--~-~-~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad- 200 (743)
T TIGR00870 126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDF--F-V-KSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD- 200 (743)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCch--h-h-cCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-
Confidence 4699999999999999999999999998762211000 0 0 000001235699999999999999999998887765
Q ss_pred eeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcC---
Q 043678 151 IFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKG--- 227 (303)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~--- 227 (303)
++..|..|+ ||||+|+..+
T Consensus 201 ------------------------------------------in~~d~~g~----------------T~Lh~A~~~~~~~ 222 (743)
T TIGR00870 201 ------------------------------------------ILTADSLGN----------------TLLHLLVMENEFK 222 (743)
T ss_pred ------------------------------------------hhhHhhhhh----------------HHHHHHHhhhhhh
Confidence 334444444 4466666554
Q ss_pred ------CHHHHHHHhhcCCcc--c----ccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 228 ------DARTVERIISENPKC--Y----ELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 228 ------~~~~v~~Ll~~g~~~--~----~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
...+.+++++.++.. . +..|..|.||||+|+..|+.++++.+++.
T Consensus 223 ~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~ 279 (743)
T TIGR00870 223 AEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI 279 (743)
T ss_pred HHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence 223455566555432 1 45788999999999999999999888884
|
after chronic exposure to capsaicin. (McCleskey and Gold, 1999). |
| >PHA02743 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-22 Score=145.26 Aligned_cols=146 Identities=11% Similarity=0.078 Sum_probs=93.5
Q ss_pred CchhhhccccCCCcHHHHHHHhCCH----HHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcH
Q 043678 62 CPALLLQVNAKGDTPLHLAAKFGHF----DIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNV 137 (303)
Q Consensus 62 ~~~~~~~~~~~g~tpL~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~ 137 (303)
++.+++..+.++.++||.|+..|+. +++++|++.|+.+ +..|..|+||||+|+..|+.
T Consensus 9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~------------------~~~d~~g~t~Lh~Aa~~g~~ 70 (166)
T PHA02743 9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL------------------HRYDHHGRQCTHMVAWYDRA 70 (166)
T ss_pred cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh------------------hccCCCCCcHHHHHHHhCcc
Confidence 4555666666777777777777776 4455566665543 35666777777777777665
Q ss_pred HH---HHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccC
Q 043678 138 DL---FKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKD 214 (303)
Q Consensus 138 ~~---v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~ 214 (303)
+. +++|+..|++ ++..+. .
T Consensus 71 ~~~~~i~~Ll~~Gad-------------------------------------------in~~d~---------------~ 92 (166)
T PHA02743 71 NAVMKIELLVNMGAD-------------------------------------------INAREL---------------G 92 (166)
T ss_pred CHHHHHHHHHHcCCC-------------------------------------------CCCCCC---------------C
Confidence 43 4444444443 222221 0
Q ss_pred CcccHHhHHHhcCCHHHHHHHhh-cCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCC
Q 043678 215 RKMTALHLAAGKGDARTVERIIS-ENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGN 288 (303)
Q Consensus 215 ~~~t~L~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~ 288 (303)
.|.||||+|+..++.+++++|++ .|++ ++.++..|+||||+|+..++.+++++|++ .|++++.++..|.
T Consensus 93 ~g~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~----~ga~~~~~~~~~~ 162 (166)
T PHA02743 93 TGNTLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRA----NGAVCDDPLSIGL 162 (166)
T ss_pred CCCcHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcccCCc
Confidence 24455777777777788888774 6777 46777778888888888887666666665 4666777766664
|
|
| >PHA02743 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=147.39 Aligned_cols=132 Identities=16% Similarity=0.097 Sum_probs=113.7
Q ss_pred hhHHHHHhcCCC----hhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhh---HHHHHHHHHhCchhhhccc-cCCC
Q 043678 3 LNFFKAASAGNS----EPFKDMARDVIESLLTAKAKNTILHINIISSERENVS---TKFVEEILEKCPALLLQVN-AKGD 74 (303)
Q Consensus 3 ~~L~~A~~~g~~----~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~---~~~Ll~~~~~~~~~~~~~~-~~g~ 74 (303)
++||.||+.|+. +++++|++.+......+..|+||||+| +..|+.+. +++|++ .|.+++.++ ..|.
T Consensus 22 ~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~A--a~~g~~~~~~~i~~Ll~----~Gadin~~d~~~g~ 95 (166)
T PHA02743 22 NTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMV--AWYDRANAVMKIELLVN----MGADINARELGTGN 95 (166)
T ss_pred cHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHH--HHhCccCHHHHHHHHHH----cCCCCCCCCCCCCC
Confidence 589999999998 555566777776667777799999999 98888765 678877 799999998 5899
Q ss_pred cHHHHHHHhCCHHHHHHHHH-HhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeee
Q 043678 75 TPLHLAAKFGHFDIVRVLIE-RAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFR 153 (303)
Q Consensus 75 tpL~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~ 153 (303)
||||+|+..++.+++++|++ .|+++ +.++..|.||||+|+..++.+++++|+..|++++..
T Consensus 96 TpLh~A~~~g~~~iv~~Ll~~~gad~------------------~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~ 157 (166)
T PHA02743 96 TLLHIAASTKNYELAEWLCRQLGVNL------------------GAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDP 157 (166)
T ss_pred cHHHHHHHhCCHHHHHHHHhccCCCc------------------cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 99999999999999999995 68774 478899999999999999999999999999988777
Q ss_pred ccccc
Q 043678 154 DSDEK 158 (303)
Q Consensus 154 ~~~~~ 158 (303)
+..|.
T Consensus 158 ~~~~~ 162 (166)
T PHA02743 158 LSIGL 162 (166)
T ss_pred ccCCc
Confidence 66654
|
|
| >KOG0514 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-22 Score=153.87 Aligned_cols=177 Identities=25% Similarity=0.199 Sum_probs=144.2
Q ss_pred CChhHHHHHHH----HHH-----hhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHh
Q 043678 13 NSEPFKDMARD----VIE-----SLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF 83 (303)
Q Consensus 13 ~~~~v~~ll~~----~~~-----~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~ 83 (303)
+++.|+..+.. ++. +++.|.+|+|+|||+ +.++++++|+.|++ ..-.+++++|..|+||.++++..
T Consensus 238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYs--VSHaNF~VV~~LLD---SgvC~VD~qNrAGYtpiMLaALA 312 (452)
T KOG0514|consen 238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYA--VSHANFDVVSILLD---SGVCDVDQQNRAGYTPVMLAALA 312 (452)
T ss_pred CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeee--ecccchHHHHHHhc---cCcccccccccccccHHHHHHHH
Confidence 45666665544 111 336788899999999 99999999999998 35578999999999999998865
Q ss_pred -----CCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhcc-ccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccc
Q 043678 84 -----GHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRM-VNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDE 157 (303)
Q Consensus 84 -----~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~ 157 (303)
.+..+|..|..-|- +|+ ....|.|+|++|+..|+.++|+.|+..|++
T Consensus 313 ~lk~~~d~~vV~~LF~mgn-------------------VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAd-------- 365 (452)
T KOG0514|consen 313 KLKQPADRTVVERLFKMGD-------------------VNAKASQHGQTALMLAVSHGRVDMVKALLACGAD-------- 365 (452)
T ss_pred hhcchhhHHHHHHHHhccC-------------------cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCC--------
Confidence 36788888888653 222 235799999999999999999998888776
Q ss_pred cchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhh
Q 043678 158 KTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS 237 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~ 237 (303)
+|.+|.+|- |+|+.|+..|+.+++++||.
T Consensus 366 -----------------------------------VNiQDdDGS----------------TALMCA~EHGhkEivklLLA 394 (452)
T KOG0514|consen 366 -----------------------------------VNIQDDDGS----------------TALMCAAEHGHKEIVKLLLA 394 (452)
T ss_pred -----------------------------------CccccCCcc----------------HHHhhhhhhChHHHHHHHhc
Confidence 555555554 66999999999999999998
Q ss_pred cCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 238 ENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 238 ~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
.....+...|.+|.|+|.+|...||.+|...|..+
T Consensus 395 ~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~ 429 (452)
T KOG0514|consen 395 VPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH 429 (452)
T ss_pred cCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence 77655789999999999999999999998887765
|
|
| >KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-22 Score=167.70 Aligned_cols=211 Identities=22% Similarity=0.215 Sum_probs=167.9
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~ 82 (303)
|.||.|+.+|+.++++.|++..+-..+.+..|.+|||+| +..|+.+++++++. .++.+|..+..|.||||.|+.
T Consensus 51 Talhha~Lng~~~is~llle~ea~ldl~d~kg~~plhla--aw~g~~e~vkmll~----q~d~~na~~~e~~tplhlaaq 124 (854)
T KOG0507|consen 51 TLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLA--AWNGNLEIVKMLLL----QTDILNAVNIENETPLHLAAQ 124 (854)
T ss_pred hHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEeh--hhcCcchHHHHHHh----cccCCCcccccCcCccchhhh
Confidence 689999999999999999999665555556699999999 99999999999998 678899999999999999999
Q ss_pred hCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhh
Q 043678 83 FGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNIL 162 (303)
Q Consensus 83 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~ 162 (303)
.|+.+++.+||++|++.. +.+..+.|+|..|++.|..++++.|+............+.. .
T Consensus 125 hgh~dvv~~Ll~~~adp~------------------i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~-~- 184 (854)
T KOG0507|consen 125 HGHLEVVFYLLKKNADPF------------------IRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDI-K- 184 (854)
T ss_pred hcchHHHHHHHhcCCCcc------------------ccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCC-C-
Confidence 999999999999999875 88899999999999999999999987653332221111100 0
Q ss_pred hhhccchhHHhh---hhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcC
Q 043678 163 FKFRHLDLFRIQ---TNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISEN 239 (303)
Q Consensus 163 ~~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g 239 (303)
.-+ ....+.+ .....+++..|+..+.+ ++.....| |+||.|+-.|..++|++|++.|
T Consensus 185 ~~~--~~~~plHlaakngh~~~~~~ll~ag~d-in~~t~~g-----------------talheaalcgk~evvr~ll~~g 244 (854)
T KOG0507|consen 185 RPF--PAIYPLHLAAKNGHVECMQALLEAGFD-INYTTEDG-----------------TALHEAALCGKAEVVRFLLEIG 244 (854)
T ss_pred CCC--CCcCCcchhhhcchHHHHHHHHhcCCC-cccccccc-----------------hhhhhHhhcCcchhhhHHHhhc
Confidence 000 0011112 22226777777777766 56555555 8899999999999999999999
Q ss_pred CcccccccCCCChHHHHHHHh
Q 043678 240 PKCYELVDNRGWNFLHYAMVS 260 (303)
Q Consensus 240 ~~~~~~~~~~g~tpl~~A~~~ 260 (303)
... .+++.+|+|+|.+-...
T Consensus 245 in~-h~~n~~~qtaldil~d~ 264 (854)
T KOG0507|consen 245 INT-HIKNQHGQTALDIIIDL 264 (854)
T ss_pred ccc-ccccccchHHHHHHHhc
Confidence 984 88999999999887654
|
|
| >PHA02741 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-21 Score=139.93 Aligned_cols=138 Identities=18% Similarity=0.200 Sum_probs=106.1
Q ss_pred hhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcH----HHHH
Q 043678 66 LLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNV----DLFK 141 (303)
Q Consensus 66 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~----~~v~ 141 (303)
++.++..|.||||+|+..|+.++++.|+...... ..++.++.+|..|.||||+|+..|+. ++++
T Consensus 14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~------------~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~ 81 (169)
T PHA02741 14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGD------------CHAAALNATDDAGQMCIHIAAEKHEAQLAAEIID 81 (169)
T ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccc------------hhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHH
Confidence 3467889999999999999999999986532000 01122568899999999999999984 5555
Q ss_pred hHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHh
Q 043678 142 LKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALH 221 (303)
Q Consensus 142 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~ 221 (303)
+|+..|++ ++..+. ..|.||||
T Consensus 82 ~Ll~~gad-------------------------------------------in~~~~---------------~~g~TpLh 103 (169)
T PHA02741 82 HLIELGAD-------------------------------------------INAQEM---------------LEGDTALH 103 (169)
T ss_pred HHHHcCCC-------------------------------------------CCCCCc---------------CCCCCHHH
Confidence 55554443 333332 03456799
Q ss_pred HHHhcCCHHHHHHHhh-cCCcccccccCCCChHHHHHHHhCCchhhHHHhhccc
Q 043678 222 LAAGKGDARTVERIIS-ENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNS 274 (303)
Q Consensus 222 ~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~ 274 (303)
+|+..++.+++++|++ .|++ ++..|..|+||||+|+..++.++++.|++...
T Consensus 104 ~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~ 156 (169)
T PHA02741 104 LAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDNEDVAMMQILREIVA 156 (169)
T ss_pred HHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999997 5888 58899999999999999999999999888643
|
|
| >PHA02741 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-21 Score=142.13 Aligned_cols=124 Identities=19% Similarity=0.191 Sum_probs=106.3
Q ss_pred ChhHHHHHhcCCChhHHHHHHH------HHHhhhhcccCCchhhhhhhhcccch----hhHHHHHHHHHhCchhhhcccc
Q 043678 2 DLNFFKAASAGNSEPFKDMARD------VIESLLTAKAKNTILHINIISSEREN----VSTKFVEEILEKCPALLLQVNA 71 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~------~~~~~~~~~~g~t~Lh~A~~~~~~~~----~~~~~Ll~~~~~~~~~~~~~~~ 71 (303)
.||||.|+..|+.++++.|+.. +.+....+..|.||||+| +..|+. +++++|+. .|.+++.++.
T Consensus 22 ~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A--~~~g~~~~~~~ii~~Ll~----~gadin~~~~ 95 (169)
T PHA02741 22 ENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIA--AEKHEAQLAAEIIDHLIE----LGADINAQEM 95 (169)
T ss_pred CCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHH--HHcCChHHHHHHHHHHHH----cCCCCCCCCc
Confidence 5899999999999999998642 466667777799999999 999985 56666666 8999999985
Q ss_pred -CCCcHHHHHHHhCCHHHHHHHHH-HhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcc
Q 043678 72 -KGDTPLHLAAKFGHFDIVRVLIE-RAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLI 149 (303)
Q Consensus 72 -~g~tpL~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~ 149 (303)
.|.||||+|+..++.+++++|++ .|+++ +..|..|+||||+|+..++.+++++|.+.+..
T Consensus 96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~------------------~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~ 157 (169)
T PHA02741 96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDL------------------HFCNADNKSPFELAIDNEDVAMMQILREIVAT 157 (169)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCC------------------CcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999999997 47664 47889999999999999999999998876543
|
|
| >PHA02884 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-21 Score=150.49 Aligned_cols=122 Identities=12% Similarity=0.065 Sum_probs=108.6
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhh----cccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhcc-ccCCCcH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLT----AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQV-NAKGDTP 76 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~----~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~g~tp 76 (303)
.++|+.|+..|+.++++.|+++|+++... +..|.||||+| +..++.+++++|++ .|++++.+ +..|.||
T Consensus 34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~A--a~~~~~eivklLL~----~GADVN~~~~~~g~Tp 107 (300)
T PHA02884 34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYA--IDCDNDDAAKLLIR----YGADVNRYAEEAKITP 107 (300)
T ss_pred CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCcCcccCCCCCCH
Confidence 47899999999999999999999987754 34699999999 99999999999999 89999986 5679999
Q ss_pred HHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCC
Q 043678 77 LHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN 147 (303)
Q Consensus 77 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~ 147 (303)
||+|+..++.+++++|+++|++++ .+|..|.||||+|+..++.+++..+.+.+
T Consensus 108 Lh~Aa~~~~~eivklLL~~GAdin------------------~kd~~G~TpL~~A~~~~~~~~~~~~~~~~ 160 (300)
T PHA02884 108 LYISVLHGCLKCLEILLSYGADIN------------------IQTNDMVTPIELALMICNNFLAFMICDNE 160 (300)
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCC------------------CCCCCCCCHHHHHHHhCChhHHHHhcCCc
Confidence 999999999999999999998854 88899999999999999988876665443
|
|
| >PHA02736 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-20 Score=136.37 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=100.1
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHH--H-----hhhhcccCCchhhhhhhhcccchh---hHHHHHHHHHhCchhhhccc-
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVI--E-----SLLTAKAKNTILHINIISSERENV---STKFVEEILEKCPALLLQVN- 70 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~--~-----~~~~~~~g~t~Lh~A~~~~~~~~~---~~~~Ll~~~~~~~~~~~~~~- 70 (303)
.||||+|++.|+. ++.+...+. + ....+..|.||||+| +..|+.+ ++++|++ .|.+++.++
T Consensus 18 ~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a--~~~~~~~~~e~v~~Ll~----~gadin~~~~ 89 (154)
T PHA02736 18 ENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIV--SNPDKADPQEKLKLLME----WGADINGKER 89 (154)
T ss_pred CCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEee--cccCchhHHHHHHHHHH----cCCCccccCC
Confidence 4899999999983 333333321 1 123466799999999 9888764 5777777 799999998
Q ss_pred cCCCcHHHHHHHhCCHHHHHHHHHH-hHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcc
Q 043678 71 AKGDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLI 149 (303)
Q Consensus 71 ~~g~tpL~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~ 149 (303)
..|.||||+|+..++.+++++|++. |+++ +.++..|+||||+|+..|+.+++++|+..|++
T Consensus 90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~------------------n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~ 151 (154)
T PHA02736 90 VFGNTPLHIAVYTQNYELATWLCNQPGVNM------------------EILNYAFKTPYYVACERHDAKMMNILRAKGAQ 151 (154)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhCCCCCC------------------ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4899999999999999999999984 7664 48899999999999999999999999988875
Q ss_pred e
Q 043678 150 L 150 (303)
Q Consensus 150 ~ 150 (303)
.
T Consensus 152 ~ 152 (154)
T PHA02736 152 C 152 (154)
T ss_pred C
Confidence 3
|
|
| >PHA02736 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-20 Score=135.48 Aligned_cols=138 Identities=14% Similarity=0.118 Sum_probs=101.3
Q ss_pred hhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHH---HH
Q 043678 64 ALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVD---LF 140 (303)
Q Consensus 64 ~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~---~v 140 (303)
...+.+|..|.||||+|+..|+ ++.++...+..... ....++..|..|.||||+|+..++.+ ++
T Consensus 8 ~~~~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~-----------~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v 74 (154)
T PHA02736 8 IFASEPDIEGENILHYLCRNGG--VTDLLAFKNAISDE-----------NRYLVLEYNRHGKQCVHIVSNPDKADPQEKL 74 (154)
T ss_pred hHHHhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcch-----------hHHHHHHhcCCCCEEEEeecccCchhHHHHH
Confidence 3456788899999999999998 34444444332210 01113356889999999999999875 34
Q ss_pred HhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHH
Q 043678 141 KLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTAL 220 (303)
Q Consensus 141 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L 220 (303)
++|+..|++ ++..+. ..|.|||
T Consensus 75 ~~Ll~~gad-------------------------------------------in~~~~---------------~~g~T~L 96 (154)
T PHA02736 75 KLLMEWGAD-------------------------------------------INGKER---------------VFGNTPL 96 (154)
T ss_pred HHHHHcCCC-------------------------------------------ccccCC---------------CCCCcHH
Confidence 455555543 333331 0345669
Q ss_pred hHHHhcCCHHHHHHHhh-cCCcccccccCCCChHHHHHHHhCCchhhHHHhhcc
Q 043678 221 HLAAGKGDARTVERIIS-ENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273 (303)
Q Consensus 221 ~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~ 273 (303)
|+|+..++.+++++|++ .|++ ++.+|..|+||||+|+..++.++++.|++.+
T Consensus 97 h~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g 149 (154)
T PHA02736 97 HIAVYTQNYELATWLCNQPGVN-MEILNYAFKTPYYVACERHDAKMMNILRAKG 149 (154)
T ss_pred HHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 99999999999999998 4888 5899999999999999999999888888854
|
|
| >PHA02884 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-20 Score=144.89 Aligned_cols=97 Identities=15% Similarity=-0.008 Sum_probs=66.5
Q ss_pred hhcccCCch-hhhhhhhcccchhhHHHHHHHHHhCchhhhccc----cCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCc
Q 043678 29 LTAKAKNTI-LHINIISSERENVSTKFVEEILEKCPALLLQVN----AKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGD 103 (303)
Q Consensus 29 ~~~~~g~t~-Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~----~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~ 103 (303)
.+|..|.|+ ||.| +..|+.+++++|++ .|++++.++ ..|.||||+|+..++.+++++|+++|++++
T Consensus 27 ~~d~~~~~~lL~~A--~~~~~~eivk~LL~----~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN--- 97 (300)
T PHA02884 27 KKNKICIANILYSS--IKFHYTDIIDAILK----LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVN--- 97 (300)
T ss_pred ccCcCCCCHHHHHH--HHcCCHHHHHHHHH----CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcC---
Confidence 445555554 4555 66677777777777 677777763 467777777777777777777777777643
Q ss_pred hHHHHHHHHhhhhhccc-cCCCccHHHHHHhcCcHHHHHhHhhCCcc
Q 043678 104 EELENRIEAFRQMIRMV-NNEKNTALHEAVSHGNVDLFKLKKTNNLI 149 (303)
Q Consensus 104 ~~~~~~~~~~~~~~~~~-~~~~~t~l~~A~~~~~~~~v~~L~~~~~~ 149 (303)
.. +..|.||||+|+..++.+++++|+..|++
T Consensus 98 ---------------~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAd 129 (300)
T PHA02884 98 ---------------RYAEEAKITPLYISVLHGCLKCLEILLSYGAD 129 (300)
T ss_pred ---------------cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 43 34677777777777777777776666665
|
|
| >KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-20 Score=151.19 Aligned_cols=198 Identities=21% Similarity=0.165 Sum_probs=150.7
Q ss_pred hhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhh
Q 043678 38 LHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMI 117 (303)
Q Consensus 38 Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 117 (303)
+--| +..|+.+-+..|+. .|..++..+.+|.|+||.+|...+.+||++|+++|+++
T Consensus 44 ~l~A--~~~~d~~ev~~ll~----~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V------------------ 99 (527)
T KOG0505|consen 44 FLEA--CSRGDLEEVRKLLN----RGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANV------------------ 99 (527)
T ss_pred HHhc--cccccHHHHHHHhc----cCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCc------------------
Confidence 3345 88899999999998 78888999999999999999999999999999999885
Q ss_pred ccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhh
Q 043678 118 RMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETD 197 (303)
Q Consensus 118 ~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 197 (303)
+..|..++||+|.|+..|+..++++|+..|+++...+..|..|....-........ ..-..
T Consensus 100 n~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l---------~~~~~---------- 160 (527)
T KOG0505|consen 100 NAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVL---------ETEMA---------- 160 (527)
T ss_pred cccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHH---------HHHHH----------
Confidence 49999999999999999999999999999999888888887765444322111111 00000
Q ss_pred hcCCCcccccccccccCCcccHHhHHHhcC----CHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcc
Q 043678 198 QYGWTPIQSTSNIADKDRKMTALHLAAGKG----DARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273 (303)
Q Consensus 198 ~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~----~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~ 273 (303)
. .|.+ .-+++.- -.+-+...+..|.+ .++.+..|.|.||.|+..|..++...|++
T Consensus 161 r----------------~gi~--iea~R~~~e~~ml~D~~q~l~~G~~-~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~-- 219 (527)
T KOG0505|consen 161 R----------------QGID--IEAARKAEEQTMLDDARQWLNAGAE-LDARHARGATALHVAAANGYTEVAALLLQ-- 219 (527)
T ss_pred H----------------hccc--HHHHhhhhHHHHHHHHHHHHhcccc-ccccccccchHHHHHHhhhHHHHHHHHHH--
Confidence 0 0111 1111111 11223444557777 57888889999999999999888877777
Q ss_pred cchhcccccCCCCCCcHHHHHHhcCCCC
Q 043678 274 SLARSLIDEGDAKGNTPLHVLAAVRPKE 301 (303)
Q Consensus 274 ~~~~~~~~~~d~~g~tpL~~A~~~~~~~ 301 (303)
.|.+++.+|.+||||||.|+.=|..+
T Consensus 220 --ag~~~~~~D~dgWtPlHAAA~Wg~~~ 245 (527)
T KOG0505|consen 220 --AGYSVNIKDYDGWTPLHAAAHWGQED 245 (527)
T ss_pred --hccCcccccccCCCcccHHHHhhhHh
Confidence 57889999999999999998766543
|
|
| >KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=125.68 Aligned_cols=144 Identities=15% Similarity=0.092 Sum_probs=117.5
Q ss_pred cHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeec
Q 043678 75 TPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRD 154 (303)
Q Consensus 75 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~ 154 (303)
--+.+|+..+....|+.|++..++. +|.+|.+|+||||.|+.+|+.++|+.|+..|++
T Consensus 65 rl~lwaae~nrl~eV~~lL~e~an~-----------------vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn----- 122 (228)
T KOG0512|consen 65 RLLLWAAEKNRLTEVQRLLSEKANH-----------------VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN----- 122 (228)
T ss_pred HHHHHHHhhccHHHHHHHHHhcccc-----------------ccccccccccHHHHHHhcCchHHHHHHHHccCC-----
Confidence 3467899999999999999877654 779999999999999999999999998777775
Q ss_pred ccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHH
Q 043678 155 SDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVER 234 (303)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~ 234 (303)
.+..... |+||||-||+..+.+++-+
T Consensus 123 --------------------------------------~~a~T~~----------------GWTPLhSAckWnN~~va~~ 148 (228)
T KOG0512|consen 123 --------------------------------------KEAKTNE----------------GWTPLHSACKWNNFEVAGR 148 (228)
T ss_pred --------------------------------------ccccccc----------------CccchhhhhcccchhHHHH
Confidence 3333444 4566999999999999999
Q ss_pred HhhcCCcccccccCCCChHHHHHHHhCCchhhH-HHhhcccchhcccccCCCCCCcHHHHHHhcC
Q 043678 235 IISENPKCYELVDNRGWNFLHYAMVSFHVGQLR-NLLENNSLARSLIDEGDAKGNTPLHVLAAVR 298 (303)
Q Consensus 235 Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~-~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~ 298 (303)
||++|+|+ +.......||||+|+...+..... +|+. ..+..+...+..+.||+.+|.+-+
T Consensus 149 LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~---dryi~pg~~nn~eeta~~iARRT~ 209 (228)
T KOG0512|consen 149 LLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLH---DRYIHPGLKNNLEETAFDIARRTS 209 (228)
T ss_pred HHhccCcc-cccccccchhhHHhhcccchHHHHHHHhh---ccccChhhhcCccchHHHHHHHhh
Confidence 99999995 888899999999999987754333 3332 346677888999999999997764
|
|
| >KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.5e-20 Score=126.55 Aligned_cols=138 Identities=18% Similarity=0.143 Sum_probs=120.1
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhh-hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHh
Q 043678 5 FFKAASAGNSEPFKDMARDVIESL-LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF 83 (303)
Q Consensus 5 L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~ 83 (303)
+..|+..+.+..|+.|++..++.. .+|.+|+||||.| +.+|+.++++.|+. .|++.+.+...|+||||-||.-
T Consensus 67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRA--aYn~h~div~~ll~----~gAn~~a~T~~GWTPLhSAckW 140 (228)
T KOG0512|consen 67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRA--AYNGHLDIVHELLL----SGANKEAKTNEGWTPLHSACKW 140 (228)
T ss_pred HHHHHhhccHHHHHHHHHhccccccccccccccHHHHH--HhcCchHHHHHHHH----ccCCcccccccCccchhhhhcc
Confidence 567999999999999999977644 7788899999999 99999999999998 7999999999999999999999
Q ss_pred CCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCc-HHHHHh-HhhCCcceeeecccccchh
Q 043678 84 GHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGN-VDLFKL-KKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 84 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~-~~~v~~-L~~~~~~~~~~~~~~~~~~ 161 (303)
++.+++..|+++|++++ +......||||.|+...+ ...+.+ |...++........+.++.
T Consensus 141 nN~~va~~LLqhgaDVn------------------A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~ 202 (228)
T KOG0512|consen 141 NNFEVAGRLLQHGADVN------------------AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAF 202 (228)
T ss_pred cchhHHHHHHhccCccc------------------ccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHH
Confidence 99999999999999854 888889999999998776 456777 4577888888888887776
Q ss_pred hhhhc
Q 043678 162 LFKFR 166 (303)
Q Consensus 162 ~~~~~ 166 (303)
..+-+
T Consensus 203 ~iARR 207 (228)
T KOG0512|consen 203 DIARR 207 (228)
T ss_pred HHHHH
Confidence 65543
|
|
| >KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-20 Score=154.94 Aligned_cols=213 Identities=23% Similarity=0.193 Sum_probs=157.1
Q ss_pred chhhhhhhhcccchhhHHHHHHHHHh-----CchhhhccccCCCcHHHHHHHh---CCHHHHHHHHHHhHHhhcCchHHH
Q 043678 36 TILHINIISSERENVSTKFVEEILEK-----CPALLLQVNAKGDTPLHLAAKF---GHFDIVRVLIERAKLAQRGDEELE 107 (303)
Q Consensus 36 t~Lh~A~~~~~~~~~~~~~Ll~~~~~-----~~~~~~~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~ 107 (303)
.++..| ...+..+....+...... ..-+++.+...|.|.||.|..+ ++.++++.|++.-... .
T Consensus 103 ~~~~~~--~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~l-------i 173 (782)
T KOG3676|consen 103 DALFIA--DSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKL-------I 173 (782)
T ss_pred hhhhhc--cccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHH-------h
Confidence 566667 777777666666653311 1245666677899999999974 4668999999864321 0
Q ss_pred HHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHH
Q 043678 108 NRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLE 187 (303)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 187 (303)
+. ..-...+.|.||||.|+.+.+.++|++|+..|++++.+.......-..
T Consensus 174 nd------~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~d------------------------ 223 (782)
T KOG3676|consen 174 ND------IYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDD------------------------ 223 (782)
T ss_pred hh------hhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCccc------------------------
Confidence 00 011235679999999999999999999999999987776544321100
Q ss_pred hccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhH
Q 043678 188 KKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLR 267 (303)
Q Consensus 188 ~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~ 267 (303)
.......++..|.- ..|+.||-.|+..++.+++++|+++|+| ++.+|++|+|.||..+..-..++..
T Consensus 224 -qk~~rk~T~Y~G~~-----------YfGEyPLSfAAC~nq~eivrlLl~~gAd-~~aqDS~GNTVLH~lVi~~~~~My~ 290 (782)
T KOG3676|consen 224 -QKASRKSTNYTGYF-----------YFGEYPLSFAACTNQPEIVRLLLAHGAD-PNAQDSNGNTVLHMLVIHFVTEMYD 290 (782)
T ss_pred -ccccccccCCccee-----------eeccCchHHHHHcCCHHHHHHHHhcCCC-CCccccCCChHHHHHHHHHHHHHHH
Confidence 00000222333322 2789999999999999999999999999 5999999999999999998888888
Q ss_pred HHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 268 NLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 268 ~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
.+++.+.. +....+|..|.|||.+|++.|.++|
T Consensus 291 ~~L~~ga~--~l~~v~N~qgLTPLtLAaklGk~em 323 (782)
T KOG3676|consen 291 LALELGAN--ALEHVRNNQGLTPLTLAAKLGKKEM 323 (782)
T ss_pred HHHhcCCC--ccccccccCCCChHHHHHHhhhHHH
Confidence 88886443 4489999999999999999998875
|
|
| >KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-19 Score=155.90 Aligned_cols=217 Identities=18% Similarity=0.183 Sum_probs=160.2
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
+-.|+|..| |+.|+.|.+..|+. .|..+..+|+.|.+||.+|+-.||..+|+.|+.+.++++
T Consensus 756 n~~t~LT~a--caggh~e~vellv~----rganiehrdkkgf~plImaatagh~tvV~~llk~ha~ve------------ 817 (2131)
T KOG4369|consen 756 NIKTNLTSA--CAGGHREEVELLVV----RGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVE------------ 817 (2131)
T ss_pred ccccccccc--ccCccHHHHHHHHH----hcccccccccccchhhhhhcccCchHHHHHHHhhhhhhh------------
Confidence 367999999 99999999999998 799999999999999999999999999999999988875
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
...|+.+.|+|.+||..|+.++|++|+..|++-..++-.+++|+..+... ...++|..|+..+..+
T Consensus 818 -----aQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sg---------gy~~iI~~llS~GseI 883 (2131)
T KOG4369|consen 818 -----AQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSG---------GYTKIIHALLSSGSEI 883 (2131)
T ss_pred -----hhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCc---------chHHHHHHHhhccccc
Confidence 24578899999999999999999999999999888888888877554322 2368899999998773
Q ss_pred hchh-hhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhh
Q 043678 193 IKET-DQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLE 271 (303)
Q Consensus 193 ~~~~-~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~ 271 (303)
.... ...| ..||+.|..+|+.+.++.|++.|.++.-....+-+|+|-+|+-.|+.+++..||.
T Consensus 884 nSrtgSklg----------------isPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa 947 (2131)
T KOG4369|consen 884 NSRTGSKLG----------------ISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLA 947 (2131)
T ss_pred ccccccccC----------------cchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHH
Confidence 2222 2334 4556666666666666666666655322333445566666666666555555555
Q ss_pred cccchhcccccCCCCCCcHHHHHHhcCCCC
Q 043678 272 NNSLARSLIDEGDAKGNTPLHVLAAVRPKE 301 (303)
Q Consensus 272 ~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~ 301 (303)
+.+.+..|-+.|.|||+-++..|+.|
T Consensus 948 ----~~anvehRaktgltplme~AsgGyvd 973 (2131)
T KOG4369|consen 948 ----AQANVEHRAKTGLTPLMEMASGGYVD 973 (2131)
T ss_pred ----HhhhhhhhcccCCcccchhhcCCccc
Confidence 34445555566666666666655544
|
|
| >PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-19 Score=116.06 Aligned_cols=86 Identities=29% Similarity=0.328 Sum_probs=78.1
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhC
Q 043678 5 FFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFG 84 (303)
Q Consensus 5 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~ 84 (303)
||.||..|+.+++++|++.+.+... |.||||+| +..|+.+++++|++ .|.+++.++..|+||||+|+..|
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A--~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~ 70 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYA--AENGNLEIVKLLLE----NGADINSQDKNGNTALHYAAENG 70 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHH--HHTTTHHHHHHHHH----TTTCTT-BSTTSSBHHHHHHHTT
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHH--HHcCCHHHHHHHHH----hcccccccCCCCCCHHHHHHHcC
Confidence 7999999999999999998764423 88999999 99999999999999 89999999999999999999999
Q ss_pred CHHHHHHHHHHhHHhh
Q 043678 85 HFDIVRVLIERAKLAQ 100 (303)
Q Consensus 85 ~~~~v~~Ll~~~~~~~ 100 (303)
+.+++++|+++|++++
T Consensus 71 ~~~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 71 NLEIVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHHHHTTT-TT
T ss_pred CHHHHHHHHHcCCCCC
Confidence 9999999999998865
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B .... |
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.6e-19 Score=131.99 Aligned_cols=119 Identities=29% Similarity=0.343 Sum_probs=85.7
Q ss_pred CchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHH
Q 043678 62 CPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFK 141 (303)
Q Consensus 62 ~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~ 141 (303)
..-+.|.-|..|.+|||||+..|+..+++.|+.+|+.+ |..+....||||.|+..|+-++|+
T Consensus 23 tehdln~gddhgfsplhwaakegh~aivemll~rgarv------------------n~tnmgddtplhlaaahghrdivq 84 (448)
T KOG0195|consen 23 TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV------------------NSTNMGDDTPLHLAAAHGHRDIVQ 84 (448)
T ss_pred cccccccccccCcchhhhhhhcccHHHHHHHHhccccc------------------ccccCCCCcchhhhhhcccHHHHH
Confidence 34456777777888888888888888888888877764 366777778888888888877776
Q ss_pred hHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHh
Q 043678 142 LKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALH 221 (303)
Q Consensus 142 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~ 221 (303)
.|++..++ ++..++.|+ ||||
T Consensus 85 kll~~kad-------------------------------------------vnavnehgn----------------tplh 105 (448)
T KOG0195|consen 85 KLLSRKAD-------------------------------------------VNAVNEHGN----------------TPLH 105 (448)
T ss_pred HHHHHhcc-------------------------------------------cchhhccCC----------------Cchh
Confidence 65544333 455555444 4478
Q ss_pred HHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHH
Q 043678 222 LAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAM 258 (303)
Q Consensus 222 ~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~ 258 (303)
+||..|+.++.+-|+..|+.+ ++.+++|.|||..|-
T Consensus 106 yacfwgydqiaedli~~ga~v-~icnk~g~tpldkak 141 (448)
T KOG0195|consen 106 YACFWGYDQIAEDLISCGAAV-NICNKKGMTPLDKAK 141 (448)
T ss_pred hhhhhcHHHHHHHHHhcccee-eecccCCCCchhhhc
Confidence 888888888888888888874 778888888887653
|
|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.5e-19 Score=131.40 Aligned_cols=134 Identities=24% Similarity=0.181 Sum_probs=117.3
Q ss_pred HHhcCCChhHHHHHHH-HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCH
Q 043678 8 AASAGNSEPFKDMARD-VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHF 86 (303)
Q Consensus 8 A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~ 86 (303)
=|+.|+.-.|+..++. .-+.+.-|.-|.+||||| ++.|+..++..|+. .|+-+|..+....||||+|+..|+.
T Consensus 7 wcregna~qvrlwld~tehdln~gddhgfsplhwa--akegh~aivemll~----rgarvn~tnmgddtplhlaaahghr 80 (448)
T KOG0195|consen 7 WCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWA--AKEGHVAIVEMLLS----RGARVNSTNMGDDTPLHLAAAHGHR 80 (448)
T ss_pred hhhcCCeEEEEEEecCcccccccccccCcchhhhh--hhcccHHHHHHHHh----cccccccccCCCCcchhhhhhcccH
Confidence 3777777777777665 333345555599999999 99999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhh
Q 043678 87 DIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKF 165 (303)
Q Consensus 87 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~ 165 (303)
++|+.|++..++ +|+.+..|.|||||||..|...+.+-|+..|+.+...++.|.+|+..+.
T Consensus 81 divqkll~~kad------------------vnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak 141 (448)
T KOG0195|consen 81 DIVQKLLSRKAD------------------VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK 141 (448)
T ss_pred HHHHHHHHHhcc------------------cchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence 999999998877 4599999999999999999999999999999999999999999886653
|
|
| >PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-18 Score=112.03 Aligned_cols=88 Identities=33% Similarity=0.419 Sum_probs=77.9
Q ss_pred hhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhh
Q 043678 38 LHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMI 117 (303)
Q Consensus 38 Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 117 (303)
||+| +..|+.+++++|++ .+.+++. |.||||+|+..|+.+++++|++.|++++
T Consensus 1 L~~A--~~~~~~~~~~~ll~----~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~----------------- 53 (89)
T PF12796_consen 1 LHIA--AQNGNLEILKFLLE----KGADINL----GNTALHYAAENGNLEIVKLLLENGADIN----------------- 53 (89)
T ss_dssp HHHH--HHTTTHHHHHHHHH----TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-----------------
T ss_pred CHHH--HHcCCHHHHHHHHH----CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccccc-----------------
Confidence 7899 99999999999999 5665555 8999999999999999999999998754
Q ss_pred ccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeee
Q 043678 118 RMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFR 153 (303)
Q Consensus 118 ~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~ 153 (303)
.+|..|+||||+|+.+|+.+++++|++.|++++.+
T Consensus 54 -~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~ 88 (89)
T PF12796_consen 54 -SQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIR 88 (89)
T ss_dssp --BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS
T ss_pred -ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 78899999999999999999999999999887654
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B .... |
| >KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=141.19 Aligned_cols=203 Identities=17% Similarity=0.158 Sum_probs=145.3
Q ss_pred hhHHHHHhcCCChhHHHHHHHHH---------HhhhhcccCCchhhhhhhh-cccchhhHHHHHHHHHhCchhhhc----
Q 043678 3 LNFFKAASAGNSEPFKDMARDVI---------ESLLTAKAKNTILHINIIS-SERENVSTKFVEEILEKCPALLLQ---- 68 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~---------~~~~~~~~g~t~Lh~A~~~-~~~~~~~~~~Ll~~~~~~~~~~~~---- 68 (303)
.+++.|...|.++.+..+++.+- +.......|.|+||.|... ..++.++++.|++.. +..+|.
T Consensus 103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~---p~lind~~~~ 179 (782)
T KOG3676|consen 103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIF---PKLINDIYTS 179 (782)
T ss_pred hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHh---HHHhhhhhhh
Confidence 46777888888888888776642 1112234599999999442 345568899998864 333333
Q ss_pred cccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhh-hhhccc---------cCCCccHHHHHHhcCcHH
Q 043678 69 VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFR-QMIRMV---------NNEKNTALHEAVSHGNVD 138 (303)
Q Consensus 69 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~t~l~~A~~~~~~~ 138 (303)
-...|.||||.|+.+.+.++|++|++.|||++.+-.. ..+. .+.... -+.|+.||.+|+--++.+
T Consensus 180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G-----~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~e 254 (782)
T KOG3676|consen 180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACG-----AFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPE 254 (782)
T ss_pred HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhc-----cccCcccccccccccCCcceeeeccCchHHHHHcCCHH
Confidence 2446999999999999999999999999998621110 0000 001111 356899999999999999
Q ss_pred HHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCccc
Q 043678 139 LFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMT 218 (303)
Q Consensus 139 ~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t 218 (303)
++++|++.+++++ .+|..|+ |
T Consensus 255 ivrlLl~~gAd~~-------------------------------------------aqDS~GN----------------T 275 (782)
T KOG3676|consen 255 IVRLLLAHGADPN-------------------------------------------AQDSNGN----------------T 275 (782)
T ss_pred HHHHHHhcCCCCC-------------------------------------------ccccCCC----------------h
Confidence 9999888888744 4444444 3
Q ss_pred HHhHHHhcCCHHHHHHHhhcCCcc-cccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 219 ALHLAAGKGDARTVERIISENPKC-YELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 219 ~L~~a~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
.||..+..-..++...++++|+.. ..+++..|-|||.+|++-|..++++.+++.
T Consensus 276 VLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 276 VLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence 377777667778888888888871 267788888999999999998888888886
|
|
| >KOG4214 consensus Myotrophin and similar proteins [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9e-18 Score=103.61 Aligned_cols=91 Identities=19% Similarity=0.146 Sum_probs=84.3
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~ 82 (303)
..+.+++++|.++.|+..+..|.+++..-. |.+|||+| +-+|+.+++.+|+. .|++++.+|+.|-|||..|++
T Consensus 4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~g-gR~plhyA--AD~GQl~ilefli~----iGA~i~~kDKygITPLLsAvw 76 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIYG-GRTPLHYA--ADYGQLSILEFLIS----IGANIQDKDKYGITPLLSAVW 76 (117)
T ss_pred hhHhhhhccCcHHHHHHHHHccccHHHHhC-CcccchHh--hhcchHHHHHHHHH----hccccCCccccCCcHHHHHHH
Confidence 456789999999999999999987766665 99999999 99999999999999 799999999999999999999
Q ss_pred hCCHHHHHHHHHHhHHhh
Q 043678 83 FGHFDIVRVLIERAKLAQ 100 (303)
Q Consensus 83 ~~~~~~v~~Ll~~~~~~~ 100 (303)
.||.++|++|+++|++..
T Consensus 77 EGH~~cVklLL~~GAdrt 94 (117)
T KOG4214|consen 77 EGHRDCVKLLLQNGADRT 94 (117)
T ss_pred HhhHHHHHHHHHcCcccc
Confidence 999999999999999865
|
|
| >cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=111.82 Aligned_cols=123 Identities=30% Similarity=0.453 Sum_probs=94.6
Q ss_pred cccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCc
Q 043678 69 VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNL 148 (303)
Q Consensus 69 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 148 (303)
++..|.||||+|+..++.+++++|++.+.+. +..+..|.+|+|+|+..++.+++++|+..++
T Consensus 3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~------------------~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~ 64 (126)
T cd00204 3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV------------------NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64 (126)
T ss_pred cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC------------------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 4567888888888888888888888887653 3667788888888888888888888766654
Q ss_pred ceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCC
Q 043678 149 ILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGD 228 (303)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~ 228 (303)
+ ++..+. .+.||+|+|+..++
T Consensus 65 ~-------------------------------------------~~~~~~----------------~~~~~l~~a~~~~~ 85 (126)
T cd00204 65 D-------------------------------------------VNARDK----------------DGNTPLHLAARNGN 85 (126)
T ss_pred C-------------------------------------------ccccCC----------------CCCCHHHHHHHcCc
Confidence 2 112222 34567899999999
Q ss_pred HHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHH
Q 043678 229 ARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNL 269 (303)
Q Consensus 229 ~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~l 269 (303)
.+++++|++.+.+ .+..+..|.||+++|+..++.+++++|
T Consensus 86 ~~~~~~L~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~L 125 (126)
T cd00204 86 LDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVKLL 125 (126)
T ss_pred HHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence 9999999998877 467888888999999988887776665
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. |
| >cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-17 Score=113.67 Aligned_cols=119 Identities=26% Similarity=0.337 Sum_probs=106.6
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.|||+.|+..|+.+++++|++.+.+....+..|.||||.| +..++.+++++|+. .+..++..+..|.||+|+|+
T Consensus 8 ~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a--~~~~~~~~~~~ll~----~~~~~~~~~~~~~~~l~~a~ 81 (126)
T cd00204 8 RTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLA--AKNGHLEIVKLLLE----KGADVNARDKDGNTPLHLAA 81 (126)
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHH--HHcCCHHHHHHHHH----cCCCccccCCCCCCHHHHHH
Confidence 4899999999999999999999876556666799999999 99999999999998 67778888899999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKK 144 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~ 144 (303)
..++.+++++|++++.+ .+..+..+.||+++|...++.+++++|+
T Consensus 82 ~~~~~~~~~~L~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 82 RNGNLDVVKLLLKHGAD------------------VNARDKDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred HcCcHHHHHHHHHcCCC------------------CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence 99999999999998754 3477889999999999999999998863
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. |
| >KOG4214 consensus Myotrophin and similar proteins [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-16 Score=96.90 Aligned_cols=100 Identities=25% Similarity=0.196 Sum_probs=88.6
Q ss_pred chhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhh
Q 043678 36 TILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQ 115 (303)
Q Consensus 36 t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~ 115 (303)
--+.|+ +.+|..+-|+-.+. .|.+++.+- .|+||||||+..|+.+++++|+..|++++
T Consensus 4 ~~~~W~--vkNG~~DeVk~~v~----~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~--------------- 61 (117)
T KOG4214|consen 4 MSVAWN--VKNGEIDEVKQSVN----EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQ--------------- 61 (117)
T ss_pred hhHhhh--hccCcHHHHHHHHH----ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccC---------------
Confidence 456788 99999998888776 577777655 89999999999999999999999999854
Q ss_pred hhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 116 MIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 116 ~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
.+|++|-|||..|++.||.++|++|+++|++-..+..+|...
T Consensus 62 ---~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~ 103 (117)
T KOG4214|consen 62 ---DKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTAL 103 (117)
T ss_pred ---CccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhH
Confidence 899999999999999999999999999999988888877753
|
|
| >PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-15 Score=89.85 Aligned_cols=56 Identities=29% Similarity=0.346 Sum_probs=31.9
Q ss_pred HhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHH
Q 043678 235 IISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVL 294 (303)
Q Consensus 235 Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A 294 (303)
||++|+..++.+|..|.||||+|+.+|+.+++++|++ .|++++.+|..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~----~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ----NGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHH----CT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH----CcCCCCCCcCCCCCHHHhC
Confidence 6788844479999999999999999999999999885 6888999999999999997
|
|
| >PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-14 Score=85.09 Aligned_cols=54 Identities=28% Similarity=0.374 Sum_probs=44.5
Q ss_pred cccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHh
Q 043678 216 KMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLL 270 (303)
Q Consensus 216 ~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll 270 (303)
|.||||+|++.|+.+++++|+++|.+ ++.+|.+|+||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 57899999999999999999999999 5888999999999999999999988875
|
... |
| >PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-14 Score=85.24 Aligned_cols=54 Identities=35% Similarity=0.416 Sum_probs=45.3
Q ss_pred CCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHH
Q 043678 34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLI 93 (303)
Q Consensus 34 g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 93 (303)
|.||||+| +..|+.+++++|++ .+.+++.+|.+|.||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A--~~~g~~~~~~~Ll~----~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWA--ARSGNLEIVKLLLE----HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHH--HHTT-HHHHHHHHH----TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHH--HHhCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 68999999 99999999999998 79999999999999999999999999999986
|
... |
| >COG0666 Arp FOG: Ankyrin repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-14 Score=113.02 Aligned_cols=121 Identities=28% Similarity=0.298 Sum_probs=111.4
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccc-----hhhHHHHHHHHHhCch---hhhccccCCC
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERE-----NVSTKFVEEILEKCPA---LLLQVNAKGD 74 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~-----~~~~~~Ll~~~~~~~~---~~~~~~~~g~ 74 (303)
++++.++..++.+.+++++..+++....+..|.||||+| +..++ .+++++|++ .|. ..+.++..|.
T Consensus 75 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a--~~~~~~~~~~~~~~~~ll~----~g~~~~~~~~~~~~g~ 148 (235)
T COG0666 75 LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLA--ALNGNPPEGNIEVAKLLLE----AGADLDVNNLRDEDGN 148 (235)
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHH--HhcCCcccchHHHHHHHHH----cCCCCCCccccCCCCC
Confidence 688999999999999999999988888888899999999 99999 999999999 677 7777799999
Q ss_pred cHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCC
Q 043678 75 TPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN 147 (303)
Q Consensus 75 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~ 147 (303)
||||+|+..|+.++++.|++.|+++. ..+..|.|++++|+..++.++++.+...+
T Consensus 149 tpl~~A~~~~~~~~~~~ll~~~~~~~------------------~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 149 TPLHWAALNGDADIVELLLEAGADPN------------------SRNSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred chhHHHHHcCchHHHHHHHhcCCCCc------------------ccccCCCcchhhhcccchHHHHHHHHhcC
Confidence 99999999999999999999988754 66899999999999999999999988765
|
|
| >PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-14 Score=84.19 Aligned_cols=51 Identities=35% Similarity=0.591 Sum_probs=29.5
Q ss_pred chhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHH
Q 043678 63 PALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEA 131 (303)
Q Consensus 63 ~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A 131 (303)
+.+++.+|..|.||||+|+..|+.+++++|++.|++++ .+|..|+||+|+|
T Consensus 6 ~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~------------------~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 6 PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPN------------------AKDKDGQTPLHYA 56 (56)
T ss_dssp T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---------------------TTS--HHHH-
T ss_pred cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCC------------------CCcCCCCCHHHhC
Confidence 37888888888899999888888888888888887744 8888888888886
|
|
| >KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=103.91 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=106.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhc-cccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQ-VNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~g~tpL~~A 80 (303)
+.||+.++..|+.+....|+..--+.+..|.+|.|||.-| +..|+.+.++.|++ .|+++|. ++..++||||.|
T Consensus 13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahA--aykGnl~~v~lll~----~gaDvN~~qhg~~YTpLmFA 86 (396)
T KOG1710|consen 13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHA--AYKGNLTLVELLLE----LGADVNDKQHGTLYTPLMFA 86 (396)
T ss_pred hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHH--HhcCcHHHHHHHHH----hCCCcCcccccccccHHHHH
Confidence 4689999999999999999988555566777799999999 99999999999999 6888877 666899999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHh
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKK 144 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~ 144 (303)
+.+|+.++.++|++.|+... ..+.-|+|+-..|+.-|+.++|..+.
T Consensus 87 ALSGn~dvcrllldaGa~~~------------------~vNsvgrTAaqmAAFVG~H~CV~iIN 132 (396)
T KOG1710|consen 87 ALSGNQDVCRLLLDAGARMY------------------LVNSVGRTAAQMAAFVGHHECVAIIN 132 (396)
T ss_pred HHcCCchHHHHHHhccCccc------------------cccchhhhHHHHHHHhcchHHHHHHh
Confidence 99999999999999998754 67888999999999999999998754
|
|
| >KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-14 Score=114.76 Aligned_cols=117 Identities=20% Similarity=0.193 Sum_probs=96.0
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhC
Q 043678 5 FFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFG 84 (303)
Q Consensus 5 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~ 84 (303)
|..|+..|.+|+|+..+.+--|....++.|.|+||-| +-.|+.+||++|++ .|+++|..|.+|+||||+|+..+
T Consensus 554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNA--iCaghyeIVkFLi~----~ganVNa~DSdGWTPLHCAASCN 627 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNA--ICAGHYEIVKFLIE----FGANVNAADSDGWTPLHCAASCN 627 (752)
T ss_pred HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhh--hhcchhHHHHHHHh----cCCcccCccCCCCchhhhhhhcC
Confidence 5679999999999999998544555666699999999 99999999999999 89999999999999999999999
Q ss_pred CHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHH--HhcCcHHHHHhHh
Q 043678 85 HFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEA--VSHGNVDLFKLKK 144 (303)
Q Consensus 85 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A--~~~~~~~~v~~L~ 144 (303)
+..+++.|++.|+.+.. ..-.++.|+..-+ ...|..+|.+||.
T Consensus 628 nv~~ckqLVe~GaavfA-----------------sTlSDmeTa~eKCee~eeGY~~CsqyL~ 672 (752)
T KOG0515|consen 628 NVPMCKQLVESGAAVFA-----------------STLSDMETAAEKCEEMEEGYDQCSQYLY 672 (752)
T ss_pred chHHHHHHHhccceEEe-----------------eecccccchhhhcchhhhhHHHHHHHHH
Confidence 99999999999987631 1223455665433 3456677888875
|
|
| >PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-14 Score=125.35 Aligned_cols=87 Identities=20% Similarity=0.231 Sum_probs=82.9
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~ 82 (303)
.+|+.|+..|+.+.++.|++.|++.+..+..|.||||+| +..|+.+++++|++ .|++++.+|..|.||||+|+.
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~A--a~~g~~eiv~~LL~----~Gadvn~~d~~G~TpLh~A~~ 157 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIA--CANGHVQVVRVLLE----FGADPTLLDKDGKTPLELAEE 157 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH--HHCCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHH
Confidence 368899999999999999999998888888899999999 99999999999999 799999999999999999999
Q ss_pred hCCHHHHHHHHHH
Q 043678 83 FGHFDIVRVLIER 95 (303)
Q Consensus 83 ~~~~~~v~~Ll~~ 95 (303)
.|+.+++++|+++
T Consensus 158 ~g~~~iv~~Ll~~ 170 (664)
T PTZ00322 158 NGFREVVQLLSRH 170 (664)
T ss_pred CCcHHHHHHHHhC
Confidence 9999999999998
|
|
| >COG0666 Arp FOG: Ankyrin repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.4e-13 Score=103.76 Aligned_cols=134 Identities=27% Similarity=0.300 Sum_probs=111.4
Q ss_pred hhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCc-----HH
Q 043678 64 ALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGN-----VD 138 (303)
Q Consensus 64 ~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~-----~~ 138 (303)
......+..+.++++.++..+..+++++++..|++++ .++..|.||+|+|+..++ .+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------~~~~~g~t~l~~a~~~~~~~~~~~~ 125 (235)
T COG0666 64 RHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVN------------------AKDADGDTPLHLAALNGNPPEGNIE 125 (235)
T ss_pred cccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcc------------------cccCCCCcHHHHHHhcCCcccchHH
Confidence 3344566678999999999999999999999988754 889999999999999999 77
Q ss_pred HHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCccc
Q 043678 139 LFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMT 218 (303)
Q Consensus 139 ~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t 218 (303)
++++|++.|.. .......+..| .|
T Consensus 126 ~~~~ll~~g~~----------------------------------------~~~~~~~~~~g----------------~t 149 (235)
T COG0666 126 VAKLLLEAGAD----------------------------------------LDVNNLRDEDG----------------NT 149 (235)
T ss_pred HHHHHHHcCCC----------------------------------------CCCccccCCCC----------------Cc
Confidence 77776666552 02234445544 46
Q ss_pred HHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 219 ALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 219 ~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
|||+|+..|+.++++.|++.|++ ++.++..|.|+++.|+..++.++++.+++.
T Consensus 150 pl~~A~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~ 202 (235)
T COG0666 150 PLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLDK 202 (235)
T ss_pred hhHHHHHcCchHHHHHHHhcCCC-CcccccCCCcchhhhcccchHHHHHHHHhc
Confidence 69999999999999999999999 488899999999999999999988888885
|
|
| >PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.4e-13 Score=118.66 Aligned_cols=100 Identities=22% Similarity=0.225 Sum_probs=88.7
Q ss_pred hhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhh
Q 043678 37 ILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQM 116 (303)
Q Consensus 37 ~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~ 116 (303)
.|+.| +..|+.+.++.|++ .|.+++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 85 ~L~~a--a~~G~~~~vk~LL~----~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn---------------- 142 (664)
T PTZ00322 85 ELCQL--AASGDAVGARILLT----GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT---------------- 142 (664)
T ss_pred HHHHH--HHcCCHHHHHHHHH----CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC----------------
Confidence 48889 99999999999998 899999999999999999999999999999999998854
Q ss_pred hccccCCCccHHHHHHhcCcHHHHHhHhhC-------Ccceeeecccccch
Q 043678 117 IRMVNNEKNTALHEAVSHGNVDLFKLKKTN-------NLILIFRDSDEKTN 160 (303)
Q Consensus 117 ~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~-------~~~~~~~~~~~~~~ 160 (303)
..|..|.||||+|+..++.+++++|+.. +++....+..|.++
T Consensus 143 --~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~ 191 (664)
T PTZ00322 143 --LLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPP 191 (664)
T ss_pred --CCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCc
Confidence 8899999999999999999999999877 66655555555543
|
|
| >KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-12 Score=103.03 Aligned_cols=97 Identities=26% Similarity=0.172 Sum_probs=85.1
Q ss_pred hhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhh
Q 043678 38 LHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMI 117 (303)
Q Consensus 38 Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 117 (303)
|--| +..|.+++|+-.+. .-.++...+..|-|+||-|+..||++||++|++.|+++
T Consensus 554 LLDa--aLeGEldlVq~~i~----ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV------------------ 609 (752)
T KOG0515|consen 554 LLDA--ALEGELDLVQRIIY----EVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV------------------ 609 (752)
T ss_pred HHhh--hhcchHHHHHHHHH----hhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc------------------
Confidence 3456 88899999999987 56678889999999999999999999999999999885
Q ss_pred ccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeeccccc
Q 043678 118 RMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEK 158 (303)
Q Consensus 118 ~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~ 158 (303)
|..|.+||||||.|+..++..+.+.|.+.|+-+.....++.
T Consensus 610 Na~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDm 650 (752)
T KOG0515|consen 610 NAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDM 650 (752)
T ss_pred cCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccc
Confidence 59999999999999999999999999999987766555433
|
|
| >KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-11 Score=90.55 Aligned_cols=101 Identities=25% Similarity=0.242 Sum_probs=82.9
Q ss_pred HHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHH
Q 043678 180 AALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMV 259 (303)
Q Consensus 180 ~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~ 259 (303)
+....||+.-.+ ++..|..| +++|..|+.+|+.++++.||+.|+|+....+..+.||||+|+-
T Consensus 26 ~~a~~LLs~vr~-vn~~D~sG----------------Ms~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL 88 (396)
T KOG1710|consen 26 EAALALLSTVRQ-VNQRDPSG----------------MSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL 88 (396)
T ss_pred HHHHHHHHHhhh-hhccCCCc----------------ccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence 445556655333 55666555 5669999999999999999999999876777889999999999
Q ss_pred hCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCC
Q 043678 260 SFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKE 301 (303)
Q Consensus 260 ~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~ 301 (303)
+|+.++.+.|++ .|+.....|.-|+|+-++|+.-|+.+
T Consensus 89 SGn~dvcrllld----aGa~~~~vNsvgrTAaqmAAFVG~H~ 126 (396)
T KOG1710|consen 89 SGNQDVCRLLLD----AGARMYLVNSVGRTAAQMAAFVGHHE 126 (396)
T ss_pred cCCchHHHHHHh----ccCccccccchhhhHHHHHHHhcchH
Confidence 999777777777 67778999999999999999988865
|
|
| >KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-10 Score=91.03 Aligned_cols=88 Identities=25% Similarity=0.315 Sum_probs=82.5
Q ss_pred hHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHh
Q 043678 4 NFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF 83 (303)
Q Consensus 4 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~ 83 (303)
++++|+..|++..++.+.-.|.+....|.+..|+||.| +..|+.+++++|++. ++.+++.+|.+|+|||.-|...
T Consensus 509 ~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvA--AaEG~v~v~kfl~~~---~kv~~~~kDRw~rtPlDdA~~F 583 (622)
T KOG0506|consen 509 NVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVA--AAEGHVEVVKFLLNA---CKVDPDPKDRWGRTPLDDAKHF 583 (622)
T ss_pred hhhhhhhcCCHHHHHHHHHhcccccccccccchhheee--cccCceeHHHHHHHH---HcCCCChhhccCCCcchHhHhc
Confidence 68899999999999999999888888898899999999 999999999999985 7888999999999999999999
Q ss_pred CCHHHHHHHHHHh
Q 043678 84 GHFDIVRVLIERA 96 (303)
Q Consensus 84 ~~~~~v~~Ll~~~ 96 (303)
+|.+++++|-+.-
T Consensus 584 ~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 584 KHKEVVKLLEEAQ 596 (622)
T ss_pred CcHHHHHHHHHHh
Confidence 9999999998864
|
|
| >PF13606 Ank_3: Ankyrin repeat | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.3e-10 Score=56.58 Aligned_cols=29 Identities=45% Similarity=0.735 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHHhHHhh
Q 043678 72 KGDTPLHLAAKFGHFDIVRVLIERAKLAQ 100 (303)
Q Consensus 72 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~ 100 (303)
+|+||||+|+..|+.+++++|+++|++++
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 48899999999999999999999987753
|
|
| >KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-09 Score=90.11 Aligned_cols=121 Identities=16% Similarity=0.213 Sum_probs=103.4
Q ss_pred hHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHh
Q 043678 4 NFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF 83 (303)
Q Consensus 4 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~ 83 (303)
.|..|+..+++--++.....|-+....+.+..|.||+| +..|+.|+|+|++++ ..+..++..+..|.|+||.|+..
T Consensus 869 eil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a--~~tg~~eivkyildh--~p~elld~~de~get~lhkaa~~ 944 (1004)
T KOG0782|consen 869 EILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYA--AKTGNGEIVKYILDH--GPSELLDMADETGETALHKAACQ 944 (1004)
T ss_pred HHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHH--HhcCChHHHHHHHhc--CCHHHHHHHhhhhhHHHHHHHHh
Confidence 46778888887777766666665656666689999999 999999999999983 34467888899999999999999
Q ss_pred CCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhC
Q 043678 84 GHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTN 146 (303)
Q Consensus 84 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~ 146 (303)
++..+.++|++.|+... ..|..|.||-..|-+.|+.+.+.||...
T Consensus 945 ~~r~vc~~lvdagasl~------------------ktd~kg~tp~eraqqa~d~dlaayle~r 989 (1004)
T KOG0782|consen 945 RNRAVCQLLVDAGASLR------------------KTDSKGKTPQERAQQAGDPDLAAYLESR 989 (1004)
T ss_pred cchHHHHHHHhcchhhe------------------ecccCCCChHHHHHhcCCchHHHHHhhh
Confidence 99999999999999854 7889999999999999999999997643
|
|
| >KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-09 Score=87.95 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=68.4
Q ss_pred HhHHHhcCCHHHHHHHhhcCCccccccc-CCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcC
Q 043678 220 LHLAAGKGDARTVERIISENPKCYELVD-NRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVR 298 (303)
Q Consensus 220 L~~a~~~~~~~~v~~Ll~~g~~~~~~~~-~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~ 298 (303)
||.+++.|+.+..-.||..|+++ |..+ ..|.||||.|++.|+ ..-++.+..+|+|+...|.+|+||+.||...|
T Consensus 137 LhasvRt~nlet~LRll~lGA~~-N~~hpekg~TpLHvAAk~Gq----~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~g 211 (669)
T KOG0818|consen 137 LHSSVRTGNLETCLRLLSLGAQA-NFFHPEKGNTPLHVAAKAGQ----ILQAELLAVYGADPGAQDSSGMTPVDYARQGG 211 (669)
T ss_pred HHHHhhcccHHHHHHHHHccccc-CCCCcccCCchhHHHHhccc----hhhhhHHhhccCCCCCCCCCCCcHHHHHHhcC
Confidence 89999999999999999999995 6666 679999999999999 45556666689999999999999999999999
Q ss_pred CCCC
Q 043678 299 PKEF 302 (303)
Q Consensus 299 ~~~i 302 (303)
|.++
T Consensus 212 H~~l 215 (669)
T KOG0818|consen 212 HHEL 215 (669)
T ss_pred chHH
Confidence 8764
|
|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-09 Score=92.58 Aligned_cols=101 Identities=19% Similarity=0.267 Sum_probs=84.8
Q ss_pred CCChhHHHHHHH-HHH-hhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccC-CCcHHHHHHHhCCHHH
Q 043678 12 GNSEPFKDMARD-VIE-SLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAK-GDTPLHLAAKFGHFDI 88 (303)
Q Consensus 12 g~~~~v~~ll~~-~~~-~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-g~tpL~~A~~~~~~~~ 88 (303)
|...-++-++++ +-+ .+..|..|.|+||.| +..+..++++||++ +|.++..+|.. |+||||-|+..|+.++
T Consensus 28 s~~Nqlk~F~~k~c~n~anikD~~GR~alH~~--~S~~k~~~l~wLlq----hGidv~vqD~ESG~taLHRaiyyG~idc 101 (1267)
T KOG0783|consen 28 SEPNQLKGFSEKSCQNLANIKDRYGRTALHIA--VSENKNSFLRWLLQ----HGIDVFVQDEESGYTALHRAIYYGNIDC 101 (1267)
T ss_pred CChhHHHHHHHHhhhhhhhHHHhhccceeeee--eccchhHHHHHHHh----cCceeeeccccccchHhhHhhhhchHHH
Confidence 344346666666 222 346777799999999 99999999999999 79999999885 9999999999999999
Q ss_pred HHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCc
Q 043678 89 VRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGN 136 (303)
Q Consensus 89 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~ 136 (303)
+..|+.+|+.. .++|+.|.+||..-++-..
T Consensus 102 a~lLL~~g~SL------------------~i~Dkeglsplq~~~r~~~ 131 (1267)
T KOG0783|consen 102 ASLLLSKGRSL------------------RIKDKEGLSPLQFLSRVLS 131 (1267)
T ss_pred HHHHHhcCCce------------------EEecccCCCHHHHHhhccc
Confidence 99999999774 4899999999999887443
|
|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-09 Score=91.89 Aligned_cols=98 Identities=23% Similarity=0.305 Sum_probs=80.6
Q ss_pred HHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCccccccc-CCCChHHHHHHHhCC
Q 043678 184 KLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVD-NRGWNFLHYAMVSFH 262 (303)
Q Consensus 184 ~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~-~~g~tpl~~A~~~~~ 262 (303)
++-+.+.+..+..|..|. ++||+++..+..+++++||++|.++ .++| ..|+||||-|+.+|+
T Consensus 36 F~~k~c~n~anikD~~GR----------------~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~ 98 (1267)
T KOG0783|consen 36 FSEKSCQNLANIKDRYGR----------------TALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGN 98 (1267)
T ss_pred HHHHhhhhhhhHHHhhcc----------------ceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhch
Confidence 344556666667777665 4489999999999999999999995 6677 679999999999999
Q ss_pred chhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 263 VGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 263 ~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
.+++..|++. |..+...|++|..||+..++-...++
T Consensus 99 idca~lLL~~----g~SL~i~Dkeglsplq~~~r~~~~~i 134 (1267)
T KOG0783|consen 99 IDCASLLLSK----GRSLRIKDKEGLSPLQFLSRVLSSTI 134 (1267)
T ss_pred HHHHHHHHhc----CCceEEecccCCCHHHHHhhcccccc
Confidence 9999999885 67799999999999999888554443
|
|
| >KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-09 Score=87.18 Aligned_cols=92 Identities=17% Similarity=0.139 Sum_probs=80.8
Q ss_pred CCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHh
Q 043678 34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAF 113 (303)
Q Consensus 34 g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 113 (303)
+...+.+| ++.|+...++-+.- .|.+.+.+|.+.+|+||+|+..|+.+++++|++...
T Consensus 506 ~~i~~~~a--a~~GD~~alrRf~l----~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~k---------------- 563 (622)
T KOG0506|consen 506 TVINVMYA--AKNGDLSALRRFAL----QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACK---------------- 563 (622)
T ss_pred chhhhhhh--hhcCCHHHHHHHHH----hcccccccccccchhheeecccCceeHHHHHHHHHc----------------
Confidence 56788999 99999998887765 699999999999999999999999999999998732
Q ss_pred hhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCc
Q 043678 114 RQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNL 148 (303)
Q Consensus 114 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 148 (303)
...+.+|.+|+|||.-|...+|.+++++|.+...
T Consensus 564 -v~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~ 597 (622)
T KOG0506|consen 564 -VDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY 597 (622)
T ss_pred -CCCChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence 2366899999999999999999999999876543
|
|
| >KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.8e-09 Score=85.75 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=80.1
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhh-hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESL-LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
..||..++.|+.+.--.|+..|++.+ ...+.|.||||.| ++.|+..-+.+|.- +|++++.+|..|.||+.+|-
T Consensus 135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvA--Ak~Gq~~Q~ElL~v----YGAD~~a~d~~GmtP~~~AR 208 (669)
T KOG0818|consen 135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVA--AKAGQILQAELLAV----YGADPGAQDSSGMTPVDYAR 208 (669)
T ss_pred HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHH--HhccchhhhhHHhh----ccCCCCCCCCCCCcHHHHHH
Confidence 46899999999999999999998877 4445599999999 99999999999988 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhH
Q 043678 82 KFGHFDIVRVLIERAK 97 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~ 97 (303)
..||.++.+.|++.-.
T Consensus 209 ~~gH~~laeRl~e~~y 224 (669)
T KOG0818|consen 209 QGGHHELAERLVEIQY 224 (669)
T ss_pred hcCchHHHHHHHHHHH
Confidence 9999999988887643
|
|
| >PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.5e-09 Score=54.13 Aligned_cols=29 Identities=45% Similarity=0.718 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHHhHHhh
Q 043678 72 KGDTPLHLAAKFGHFDIVRVLIERAKLAQ 100 (303)
Q Consensus 72 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~ 100 (303)
+|.||||+|+..|+.+++++|+++|++++
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~ 29 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADIN 29 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence 58899999999999999999999888765
|
Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A .... |
| >PF13606 Ank_3: Ankyrin repeat | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.3e-09 Score=51.28 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.2
Q ss_pred cccHHhHHHhcCCHHHHHHHhhcCCcc
Q 043678 216 KMTALHLAAGKGDARTVERIISENPKC 242 (303)
Q Consensus 216 ~~t~L~~a~~~~~~~~v~~Ll~~g~~~ 242 (303)
|+||||+|++.|+.+++++||++|+++
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv 28 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADV 28 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence 567899999999999999999998874
|
|
| >PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-08 Score=51.59 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=22.6
Q ss_pred cccHHhHHHhcCCHHHHHHHhhcCCccccccc
Q 043678 216 KMTALHLAAGKGDARTVERIISENPKCYELVD 247 (303)
Q Consensus 216 ~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~ 247 (303)
|.||||+|+..|+.+++++|+++|+++ +.+|
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d 32 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADI-NARD 32 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCT-TCBC
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCC-CCCC
Confidence 567788888888888888888877773 5544
|
Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A .... |
| >KOG0522 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.3e-08 Score=80.09 Aligned_cols=84 Identities=31% Similarity=0.410 Sum_probs=55.5
Q ss_pred hhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhh
Q 043678 37 ILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQM 116 (303)
Q Consensus 37 ~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~ 116 (303)
|+|++ +.....+.....+.. +....++..|..|.||||.|+..|+.+.++.|+..|+++.
T Consensus 23 ~lh~~--~~~~~~~sl~~el~~--~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~---------------- 82 (560)
T KOG0522|consen 23 PLHWA--VVTTDSDSLEQELLA--KVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS---------------- 82 (560)
T ss_pred ccchh--hhccchhhHHHHHhh--hhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc----------------
Confidence 47777 666555554443331 1345566677777777777777777777777777777644
Q ss_pred hccccCCCccHHHHHHhcCcHHHHHh
Q 043678 117 IRMVNNEKNTALHEAVSHGNVDLFKL 142 (303)
Q Consensus 117 ~~~~~~~~~t~l~~A~~~~~~~~v~~ 142 (303)
.+|..|++|||.|+..|+.+++.-
T Consensus 83 --~kN~~gWs~L~EAv~~g~~q~i~~ 106 (560)
T KOG0522|consen 83 --IKNNEGWSPLHEAVSTGNEQIITE 106 (560)
T ss_pred --ccccccccHHHHHHHcCCHHHHHH
Confidence 677777777777777777665554
|
|
| >KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8e-08 Score=79.70 Aligned_cols=84 Identities=24% Similarity=0.327 Sum_probs=71.5
Q ss_pred CcccHHhHHHhcCCHHHHHHHhhcCCc-ccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHH
Q 043678 215 RKMTALHLAAGKGDARTVERIISENPK-CYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293 (303)
Q Consensus 215 ~~~t~L~~a~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~ 293 (303)
...+.||+|++.|+-++|+++|.+|+. .++..|..|.|+||-|+-.++..+..+|+ +.|+.+...|..|.||-+-
T Consensus 898 ~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lv----dagasl~ktd~kg~tp~er 973 (1004)
T KOG0782|consen 898 DHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLV----DAGASLRKTDSKGKTPQER 973 (1004)
T ss_pred chhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHH----hcchhheecccCCCChHHH
Confidence 567889999999999999999999964 36788899999999999999955555554 4788899999999999999
Q ss_pred HHhcCCCCC
Q 043678 294 LAAVRPKEF 302 (303)
Q Consensus 294 A~~~~~~~i 302 (303)
|.+.|..|+
T Consensus 974 aqqa~d~dl 982 (1004)
T KOG0782|consen 974 AQQAGDPDL 982 (1004)
T ss_pred HHhcCCchH
Confidence 988887653
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.2e-08 Score=80.79 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=80.3
Q ss_pred hhHHHHHhcCCChhHHHHHHHHH----HhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVI----ESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLH 78 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~----~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~ 78 (303)
..|..|+...|+..+-.|+.+|. +....+.+|.|+||+| ++.|+..+.++|+= +|.++-.+|..|+|+|.
T Consensus 626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa--~~~gnVvl~QLLiW----yg~dv~~rda~g~t~l~ 699 (749)
T KOG0705|consen 626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLA--ARKGNVVLAQLLIW----YGVDVMARDAHGRTALF 699 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhh--hhhcchhHHHHHHH----hCccceecccCCchhhh
Confidence 45778999999999999999853 2335556689999999 99999999999986 79999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHhHHhh
Q 043678 79 LAAKFGHFDIVRVLIERAKLAQ 100 (303)
Q Consensus 79 ~A~~~~~~~~v~~Ll~~~~~~~ 100 (303)
||-..|..+++..|+++|...+
T Consensus 700 yar~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 700 YARQAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred hHhhcccHHHHHHHHHcCCCcc
Confidence 9999999999999999987543
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.5e-07 Score=76.87 Aligned_cols=92 Identities=17% Similarity=0.079 Sum_probs=71.7
Q ss_pred hhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhh
Q 043678 38 LHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMI 117 (303)
Q Consensus 38 Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 117 (303)
|..| +...+...+-+|+.+-.....+-...+.+|+|+||+||..|+..+.++|+=+|+++.
T Consensus 628 Ll~A--~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~----------------- 688 (749)
T KOG0705|consen 628 LLRA--VAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM----------------- 688 (749)
T ss_pred HHHH--HHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccce-----------------
Confidence 4456 555666666666663212222333345678999999999999999999999998865
Q ss_pred ccccCCCccHHHHHHhcCcHHHHHhHhhCCcc
Q 043678 118 RMVNNEKNTALHEAVSHGNVDLFKLKKTNNLI 149 (303)
Q Consensus 118 ~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~ 149 (303)
+.|.+|+|+|.||-+.|..+++..|+.+|..
T Consensus 689 -~rda~g~t~l~yar~a~sqec~d~llq~gcp 719 (749)
T KOG0705|consen 689 -ARDAHGRTALFYARQAGSQECIDVLLQYGCP 719 (749)
T ss_pred -ecccCCchhhhhHhhcccHHHHHHHHHcCCC
Confidence 8899999999999999999999999988875
|
|
| >KOG0522 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4e-07 Score=75.09 Aligned_cols=88 Identities=16% Similarity=0.127 Sum_probs=75.1
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHH--hhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIE--SLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
.|+|.++...+.+-+...+...+. +...|-.|.||||.| +..|+.+.++.|+. .++++..+|..|++|||-|
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlA--V~Lg~~~~a~~Ll~----a~Adv~~kN~~gWs~L~EA 95 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLA--VRLGHVEAARILLS----AGADVSIKNNEGWSPLHEA 95 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHH--HHhcCHHHHHHHHh----cCCCccccccccccHHHHH
Confidence 358999999998888776665422 225666699999999 99999999999999 8999999999999999999
Q ss_pred HHhCCHHHHHHHHHHh
Q 043678 81 AKFGHFDIVRVLIERA 96 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~ 96 (303)
+..|+..++..++.+.
T Consensus 96 v~~g~~q~i~~vlr~~ 111 (560)
T KOG0522|consen 96 VSTGNEQIITEVLRHL 111 (560)
T ss_pred HHcCCHHHHHHHHHHh
Confidence 9999999988888764
|
|
| >KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.5e-06 Score=73.03 Aligned_cols=125 Identities=14% Similarity=0.059 Sum_probs=96.9
Q ss_pred hHHHHHhcCCChhHHHHHHH----HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHH
Q 043678 4 NFFKAASAGNSEPFKDMARD----VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHL 79 (303)
Q Consensus 4 ~L~~A~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~ 79 (303)
....|+..|+.-.|+..++. ..+.+..|.-|.++|+.| +.+.+.|+..+|++ .+... ..+|.+
T Consensus 28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~ia--i~nenle~~eLLl~----~~~~~-------gdALL~ 94 (822)
T KOG3609|consen 28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIA--IDNENLELQELLLD----TSSEE-------GDALLL 94 (822)
T ss_pred HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecc--cccccHHHHHHHhc----Ccccc-------chHHHH
Confidence 45689999999999999988 245667777799999999 99999999999998 33222 568999
Q ss_pred HHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcc
Q 043678 80 AAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLI 149 (303)
Q Consensus 80 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~ 149 (303)
|+..|....|+.++.+......... ....-......+.||+..|+..+++|++++|+..|+.
T Consensus 95 aI~~~~v~~VE~ll~~~~~~~~~~~--------~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~ 156 (822)
T KOG3609|consen 95 AIAVGSVPLVELLLVHFVDAPYLER--------SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC 156 (822)
T ss_pred HHHHHHHHHHHHHHhcccccchhcc--------ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence 9999999999999987543211000 0001113344578999999999999999999988876
|
|
| >KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.1e-07 Score=80.57 Aligned_cols=83 Identities=25% Similarity=0.316 Sum_probs=74.5
Q ss_pred CCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHH
Q 043678 214 DRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293 (303)
Q Consensus 214 ~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~ 293 (303)
..|.++||.|+..+...+.++|+++|++ ++..|..|+||+|.+...|+......+++ .|++.+..|.+|++||++
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~----~~a~~~a~~~~~~~~l~~ 728 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLK----RGADPNAFDPDGKLPLDI 728 (785)
T ss_pred hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhcc----ccccccccCccCcchhhH
Confidence 4678999999999999999999999999 69999999999999999999877777777 688899999999999999
Q ss_pred HHhcCCCC
Q 043678 294 LAAVRPKE 301 (303)
Q Consensus 294 A~~~~~~~ 301 (303)
|....+.+
T Consensus 729 a~~~~~~d 736 (785)
T KOG0521|consen 729 AMEAANAD 736 (785)
T ss_pred Hhhhcccc
Confidence 97765443
|
|
| >KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-06 Score=75.55 Aligned_cols=131 Identities=15% Similarity=0.140 Sum_probs=97.0
Q ss_pred chhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhh
Q 043678 36 TILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQ 115 (303)
Q Consensus 36 t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~ 115 (303)
--.-.| +..|+.-.|+..++.......++|.+|.-|+++|+.|+.+.+.+++++|++++..
T Consensus 27 ~~fL~a--~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~----------------- 87 (822)
T KOG3609|consen 27 KGFLLA--HENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE----------------- 87 (822)
T ss_pred HHHHHH--HHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc-----------------
Confidence 345567 8999999999988865455567899999999999999999999999999987432
Q ss_pred hhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhch
Q 043678 116 MIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKE 195 (303)
Q Consensus 116 ~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 195 (303)
-..+|.+|+..|..+.|+.++........... .
T Consensus 88 --------~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~---------------------------------------~ 120 (822)
T KOG3609|consen 88 --------EGDALLLAIAVGSVPLVELLLVHFVDAPYLER---------------------------------------S 120 (822)
T ss_pred --------cchHHHHHHHHHHHHHHHHHHhcccccchhcc---------------------------------------c
Confidence 15789999999999999986644322100000 0
Q ss_pred hhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcc
Q 043678 196 TDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKC 242 (303)
Q Consensus 196 ~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~ 242 (303)
.| .....-..+.||+..||..+++++++.||++|+.+
T Consensus 121 ~d----------~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i 157 (822)
T KOG3609|consen 121 GD----------ANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI 157 (822)
T ss_pred cc----------cCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence 00 00111125789999999999999999999999774
|
|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-06 Score=69.07 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=47.7
Q ss_pred hHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcH
Q 043678 4 NFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTP 76 (303)
Q Consensus 4 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tp 76 (303)
.|+.||+.|+.+.|++|++.|++++..|....+||.+| +..|+.+++++|++ +|+.-..-..+|.-+
T Consensus 39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lA--sLcGHe~vvklLLe----nGAiC~rdtf~G~RC 105 (516)
T KOG0511|consen 39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLA--SLCGHEDVVKLLLE----NGAICSRDTFDGDRC 105 (516)
T ss_pred HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHH--HHcCcHHHHHHHHH----cCCcccccccCcchh
Confidence 46777777777777777777777777777777777777 77777777777777 666655555555444
|
|
| >KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.5e-06 Score=77.68 Aligned_cols=88 Identities=23% Similarity=0.319 Sum_probs=79.6
Q ss_pred ccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHH
Q 043678 32 KAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIE 111 (303)
Q Consensus 32 ~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 111 (303)
..|.|+||.| +..+....+.+|++ .|+++|..+..|.||||.+...|+...+..|+++|++..
T Consensus 654 ~~~~s~lh~a--~~~~~~~~~e~ll~----~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~----------- 716 (785)
T KOG0521|consen 654 CIGCSLLHVA--VGTGDSGAVELLLQ----NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPN----------- 716 (785)
T ss_pred hcccchhhhh--hccchHHHHHHHHh----cCCcchhhhccCCCcchhhhhhcccchhhhhcccccccc-----------
Confidence 3489999999 99999999999999 899999999999999999999999999999999998854
Q ss_pred HhhhhhccccCCCccHHHHHHhcCcHHHHHhH
Q 043678 112 AFRQMIRMVNNEKNTALHEAVSHGNVDLFKLK 143 (303)
Q Consensus 112 ~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L 143 (303)
+.+..|.+|+++|....+.+.+-++
T Consensus 717 -------a~~~~~~~~l~~a~~~~~~d~~~l~ 741 (785)
T KOG0521|consen 717 -------AFDPDGKLPLDIAMEAANADIVLLL 741 (785)
T ss_pred -------ccCccCcchhhHHhhhccccHHHHH
Confidence 8889999999999888777766653
|
|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.7e-06 Score=67.39 Aligned_cols=57 Identities=23% Similarity=0.320 Sum_probs=53.6
Q ss_pred hhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHh
Q 043678 37 ILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLA 99 (303)
Q Consensus 37 ~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~ 99 (303)
-|..| |+.|+.+.+++|++ .|.++|..|.....||.+|+..||.++|++|+++|+.-
T Consensus 39 elcea--cR~GD~d~v~~LVe----tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC 95 (516)
T KOG0511|consen 39 ELCEA--CRAGDVDRVRYLVE----TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC 95 (516)
T ss_pred HHHHH--hhcccHHHHHHHHH----hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence 47789 99999999999999 79999999999999999999999999999999999843
|
|
| >KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.1e-06 Score=59.52 Aligned_cols=66 Identities=21% Similarity=0.139 Sum_probs=53.3
Q ss_pred chhhhccccCCCcHHHHHHHhCCHHHHHHHHHHh-HHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHH
Q 043678 63 PALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA-KLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFK 141 (303)
Q Consensus 63 ~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~ 141 (303)
+.++|.+|..|+||++.|+..|+.+.+.||+.+| +. +...|..|.++..+|-+.|..+++.
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~------------------vgv~d~ssldaaqlaek~g~~~fvh 63 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF------------------VGVTDESSLDAAQLAEKGGAQAFVH 63 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccc------------------ccccccccchHHHHHHhcChHHHHH
Confidence 3467888888888888888888888888888888 44 3477888888888888888888888
Q ss_pred hHhhC
Q 043678 142 LKKTN 146 (303)
Q Consensus 142 ~L~~~ 146 (303)
.|.+.
T Consensus 64 ~lfe~ 68 (223)
T KOG2384|consen 64 SLFEN 68 (223)
T ss_pred HHHHH
Confidence 87655
|
|
| >KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.3e-06 Score=75.45 Aligned_cols=126 Identities=16% Similarity=-0.003 Sum_probs=96.4
Q ss_pred hhHHHHHhcCCChhHHHHHHH-HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARD-VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
+-+|.++..+..-.++.+++. +.....-+.+|.-.+|++ +. ++.+.+-+++. ..|..++.+|..|+||||||+
T Consensus 576 lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfc--a~-lg~ewA~ll~~---~~~~ai~i~D~~G~tpL~wAa 649 (975)
T KOG0520|consen 576 LLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFC--AA-LGYEWAFLPIS---ADGVAIDIRDRNGWTPLHWAA 649 (975)
T ss_pred HHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHh--hh-cCCceeEEEEe---ecccccccccCCCCcccchHh
Confidence 467888999999999999986 443334455577788886 54 44555555544 378889999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhC
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTN 146 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~ 146 (303)
..|+..++.-|++.|++.. +-.+.......|.|+-..|..+|+..+..+|.+.
T Consensus 650 ~~G~e~l~a~l~~lga~~~------------~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 650 FRGREKLVASLIELGADPG------------AVTDPSPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred hcCHHHHHHHHHHhccccc------------cccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 9999999999999888754 1112345666799999999999998888876544
|
|
| >KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.5e-05 Score=70.08 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=52.5
Q ss_pred HhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccc--cCCCCCCcHHHHHHhc
Q 043678 220 LHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLID--EGDAKGNTPLHVLAAV 297 (303)
Q Consensus 220 L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~--~~d~~g~tpL~~A~~~ 297 (303)
+|.+ ..+..+.+-+++......++.+|..||||||+|+.+|+..++..|++.+...++..+ ..+-.|.|+-..|..+
T Consensus 612 ~hfc-a~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~ 690 (975)
T KOG0520|consen 612 IHFC-AALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARAN 690 (975)
T ss_pred hhHh-hhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcc
Confidence 4553 344455444444433333677888888888888888887777777776666665433 3344578888888777
Q ss_pred CCCCC
Q 043678 298 RPKEF 302 (303)
Q Consensus 298 ~~~~i 302 (303)
|+..+
T Consensus 691 g~~gi 695 (975)
T KOG0520|consen 691 GHKGI 695 (975)
T ss_pred cccch
Confidence 76643
|
|
| >KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.4e-05 Score=54.89 Aligned_cols=67 Identities=18% Similarity=0.073 Sum_probs=60.3
Q ss_pred HhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCc-hhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHH
Q 043678 26 ESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCP-ALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKL 98 (303)
Q Consensus 26 ~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~-~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 98 (303)
+.+.+|..|+|+++.| +..|+.+.+.||+. .| +.+...|..|.+++.+|-..|..++++.|.+.-.+
T Consensus 4 ~in~rD~fgWTalmca--a~eg~~eavsyllg----rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e 71 (223)
T KOG2384|consen 4 NINARDAFGWTALMCA--AMEGSNEAVSYLLG----RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE 71 (223)
T ss_pred CccchhhhcchHHHHH--hhhcchhHHHHHhc----cCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence 3456788899999999 99999999999999 67 88999999999999999999999999999987443
|
|
| >smart00248 ANK ankyrin repeats | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00033 Score=34.04 Aligned_cols=27 Identities=41% Similarity=0.810 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHHhHH
Q 043678 72 KGDTPLHLAAKFGHFDIVRVLIERAKL 98 (303)
Q Consensus 72 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 98 (303)
.|.||+|+|+..++.++++.|++.+.+
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~ 27 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGAD 27 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 367888888888888888888887643
|
Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. |
| >PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0056 Score=44.26 Aligned_cols=44 Identities=23% Similarity=0.116 Sum_probs=37.2
Q ss_pred HhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHh
Q 043678 220 LHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLL 270 (303)
Q Consensus 220 L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll 270 (303)
|.+|+.+|....+...+++|+++ + .++|..|+.+++..++.+++
T Consensus 147 l~~a~~kgll~F~letlkygg~~-~------~~vls~Av~ynhRkIL~yfi 190 (192)
T PF03158_consen 147 LEKAAAKGLLPFVLETLKYGGNV-D------IIVLSQAVKYNHRKILDYFI 190 (192)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcc-c------HHHHHHHHHhhHHHHHHHhh
Confidence 78999999999999999999985 3 28999999999966655554
|
These proteins may be involved in promoting survival of infected macrophages []. |
| >smart00248 ANK ankyrin repeats | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0017 Score=31.26 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=20.3
Q ss_pred cccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 216 KMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 216 ~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
+.||+|+|+..++.++++.|++.+.+
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~ 27 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGAD 27 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 45778888888888888888887765
|
Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. |
| >KOG2505 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0012 Score=54.82 Aligned_cols=64 Identities=23% Similarity=0.224 Sum_probs=46.1
Q ss_pred CHHHHHHHhhcCCcc-----cccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHH
Q 043678 228 DARTVERIISENPKC-----YELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLA 295 (303)
Q Consensus 228 ~~~~v~~Ll~~g~~~-----~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~ 295 (303)
-...+++|.+++... ....+.--.|+||||+..|..+++.++|+ .|+|+..+|..|.||..+++
T Consensus 403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Le----eg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLE----EGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHH----hcCCchhcccCCCCcccccc
Confidence 355778888777553 12233445688888888888777777777 46778888888888888775
|
|
| >KOG2505 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0016 Score=54.05 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=40.3
Q ss_pred ccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHH
Q 043678 70 NAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAV 132 (303)
Q Consensus 70 ~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~ 132 (303)
+.--.|+||+|+..|...+|.+||+.|+++. +.|..|+||...+.
T Consensus 427 ~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~------------------~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 427 DYLTSTFLHYAAAQGARKCVKYFLEEGCDPS------------------TKDGAGRTPYSLSA 471 (591)
T ss_pred ccccchHHHHHHhcchHHHHHHHHHhcCCch------------------hcccCCCCcccccc
Confidence 3346799999999999999999999998876 88999999999887
|
|
| >PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.032 Score=41.84 Aligned_cols=121 Identities=13% Similarity=0.112 Sum_probs=69.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhC-Cccee--e
Q 043678 76 PLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTN-NLILI--F 152 (303)
Q Consensus 76 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~-~~~~~--~ 152 (303)
.|--|+...+++-+.-++....+ -.+++-+++.++..+++.+|+++ ...-. .
T Consensus 156 sledAV~AsN~~~i~~~VtdKkd-------------------------A~~Am~~si~~~K~dva~~lls~f~ft~~dv~ 210 (284)
T PF06128_consen 156 SLEDAVKASNYEEISNLVTDKKD-------------------------AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVA 210 (284)
T ss_pred cHHHHHhhcCHHHHHHHhcchHH-------------------------HHHHHHHHhcccHHHHHHHHHhhcceecchhh
Confidence 35557777777766666654322 35677777777777777776533 11100 0
Q ss_pred ecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHH
Q 043678 153 RDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTV 232 (303)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v 232 (303)
....+.-.+.+.+ ....+...++++++.+|-..++..-+. .+.|.|-|--|+++++-+++
T Consensus 211 ~~~~~~ydieY~L-------S~h~a~~kvL~~Fi~~Glv~vN~~F~~-------------~NSGdtMLDNA~Ky~~~emi 270 (284)
T PF06128_consen 211 SMEKELYDIEYLL-------SEHSASYKVLEYFINRGLVDVNKKFQK-------------VNSGDTMLDNAMKYKNSEMI 270 (284)
T ss_pred hcCcchhhHHHHH-------hhcCCcHHHHHHHHhccccccchhhhc-------------cCCcchHHHhHHhcCcHHHH
Confidence 0000110111111 011222566677777665544443222 23788999999999999999
Q ss_pred HHHhhcCCc
Q 043678 233 ERIISENPK 241 (303)
Q Consensus 233 ~~Ll~~g~~ 241 (303)
.+||++|+.
T Consensus 271 ~~Llk~GA~ 279 (284)
T PF06128_consen 271 AFLLKYGAI 279 (284)
T ss_pred HHHHHcCcc
Confidence 999999985
|
The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol []. |
| >PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.082 Score=32.87 Aligned_cols=45 Identities=18% Similarity=0.087 Sum_probs=27.8
Q ss_pred hHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHH
Q 043678 4 NFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEE 57 (303)
Q Consensus 4 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~ 57 (303)
-+..|+..|+.|+++.+++.+- .. ..++..| +..-+.+++++|++
T Consensus 9 tl~~Ai~GGN~eII~~c~~~~~---~~----~~~l~~A--I~~H~n~i~~~l~~ 53 (76)
T PF11929_consen 9 TLEYAIIGGNFEIINICLKKNK---PD----NDCLEYA--IKSHNNEIADWLIE 53 (76)
T ss_pred HHHHHHhCCCHHHHHHHHHHhc---cH----HHHHHHH--HHHhhHHHHHHHHH
Confidence 3556777777777777765431 11 2356677 66666777777766
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ]. |
| >PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.18 Score=38.06 Aligned_cols=120 Identities=12% Similarity=0.142 Sum_probs=76.1
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHh-
Q 043678 5 FFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF- 83 (303)
Q Consensus 5 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~- 83 (303)
|-.|+..-+++.+..++...-+ -.+++-+| ...+..+++.+|+..+.-...++-... .+.--+-|+...
T Consensus 157 ledAV~AsN~~~i~~~VtdKkd-------A~~Am~~s--i~~~K~dva~~lls~f~ft~~dv~~~~-~~~ydieY~LS~h 226 (284)
T PF06128_consen 157 LEDAVKASNYEEISNLVTDKKD-------AHQAMWLS--IGNAKEDVALYLLSKFNFTKQDVASME-KELYDIEYLLSEH 226 (284)
T ss_pred HHHHHhhcCHHHHHHHhcchHH-------HHHHHHHH--hcccHHHHHHHHHhhcceecchhhhcC-cchhhHHHHHhhc
Confidence 3456666666666655544221 35678888 888888999999874322111111111 133345555443
Q ss_pred -CCHHHHHHHHHHhHH-hhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcc
Q 043678 84 -GHFDIVRVLIERAKL-AQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLI 149 (303)
Q Consensus 84 -~~~~~v~~Ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~ 149 (303)
.+..++++++++|.. ++.. -..-..|.|-|.-|+.+++.+++.+|+.+|+.
T Consensus 227 ~a~~kvL~~Fi~~Glv~vN~~---------------F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 227 SASYKVLEYFINRGLVDVNKK---------------FQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred CCcHHHHHHHHhccccccchh---------------hhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 467788888888742 1100 12446799999999999999999999999874
|
The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol []. |
| >PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.1 Score=32.43 Aligned_cols=47 Identities=17% Similarity=0.060 Sum_probs=39.1
Q ss_pred chhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHH
Q 043678 36 TILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIER 95 (303)
Q Consensus 36 t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 95 (303)
..+..| +..|+.|+++.+++. + ..+ ...+..|+...+.+++++|+++
T Consensus 8 ~tl~~A--i~GGN~eII~~c~~~----~----~~~---~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYA--IIGGNFEIINICLKK----N----KPD---NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHH--HhCCCHHHHHHHHHH----h----ccH---HHHHHHHHHHhhHHHHHHHHHh
Confidence 478899 999999999999872 2 111 4679999999999999999986
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ]. |
| >PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.2 Score=32.60 Aligned_cols=111 Identities=13% Similarity=0.138 Sum_probs=63.5
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCc---------------------
Q 043678 5 FFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCP--------------------- 63 (303)
Q Consensus 5 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~--------------------- 63 (303)
|..||+.+-+.++++.-+...+. -...++.+-.| |+..+.|+++|+-+.+....
T Consensus 50 l~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElA--C~~qkydiV~WI~qnL~i~~~~~iFdIA~~~kDlsLyslGY 124 (192)
T PF03158_consen 50 LYHAVKYNMLSILQKYKEDLENE---RYLNQELFELA--CEEQKYDIVKWIGQNLHIYNPEDIFDIAFAKKDLSLYSLGY 124 (192)
T ss_pred HHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHH--HHHccccHHHHHhhccCCCCchhhhhhhhhccchhHHHHHH
Confidence 45577777777777665553211 11245667777 77777777777755211100
Q ss_pred -hhhhcccc-CCC-------cHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhc
Q 043678 64 -ALLLQVNA-KGD-------TPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSH 134 (303)
Q Consensus 64 -~~~~~~~~-~g~-------tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~ 134 (303)
...+.... .+. .-|.+|+..|-...+...+++|.+.+ .+.|..|+.+
T Consensus 125 ~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~------------------------~~vls~Av~y 180 (192)
T PF03158_consen 125 KLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD------------------------IIVLSQAVKY 180 (192)
T ss_pred HHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc------------------------HHHHHHHHHh
Confidence 00000000 011 12456666676666666666664432 3899999999
Q ss_pred CcHHHHHhHh
Q 043678 135 GNVDLFKLKK 144 (303)
Q Consensus 135 ~~~~~v~~L~ 144 (303)
.+..++.+++
T Consensus 181 nhRkIL~yfi 190 (192)
T PF03158_consen 181 NHRKILDYFI 190 (192)
T ss_pred hHHHHHHHhh
Confidence 9998888754
|
These proteins may be involved in promoting survival of infected macrophages []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 303 | ||||
| 1n11_A | 437 | D34 Region Of Human Ankyrin-R And Linker Length = 4 | 2e-07 | ||
| 4f6r_D | 169 | Tubulin:stathmin-Like Domain Complex Length = 169 | 6e-04 |
| >pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437 | Back alignment and structure |
|
| >pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 6e-20
Identities = 40/266 (15%), Positives = 71/266 (26%), Gaps = 65/266 (24%)
Query: 64 ALLLQVNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRM 119
A ++ + G T LHLAA G V L A + +
Sbjct: 33 AGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-------------------VLV 73
Query: 120 VNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNS-- 177
+TALH A + L+ + + + D +++
Sbjct: 74 AERGGHTALHLACRVRAHTCACV-----LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 178 -IYAALPKLLEKKKNLIK------ETDQYGWTPIQSTS------------------NIAD 212
+ + E++ + G TP+ N +
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188
Query: 213 KDRKMTALHLAAGKGDARTVERIISE--NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLL 270
T LHLA A +E ++ +P G L A++ + R L
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAGADP---TARMYGGRTPLGSALLRPNPILARLLR 245
Query: 271 ENNSLARSLIDEGDAKGNTPLHVLAA 296
+ A E +P +
Sbjct: 246 AHG--AP--EPEDGGDKLSPCS-SSG 266
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 4e-15
Identities = 42/257 (16%), Positives = 68/257 (26%), Gaps = 57/257 (22%)
Query: 69 VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTAL 128
V GDT LHLA H + L+ A + + + N+ TAL
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGF---------------SAGHEYLDLQNDLGQTAL 49
Query: 129 HEAVSHGNVDLFKL---------KKTNN-------------------LILIFRDSDEKTN 160
H A G + L+ +
Sbjct: 50 HLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS 109
Query: 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRK-MTA 219
+ + D + P ++ + N E + + ++ T
Sbjct: 110 DTYLTQSQDC-----TPDTSHAPAAVDSQPNPENEEEPRD---EDWRLQLEAENYDGHTP 161
Query: 220 LHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSL 279
LH+A DA V + + G LH A+ + L LL+ +
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG----AD 217
Query: 280 IDEGDAKGNTPLHVLAA 296
G TPL A
Sbjct: 218 PTARMYGGRTPLG-SAL 233
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-09
Identities = 30/252 (11%), Positives = 56/252 (22%), Gaps = 95/252 (37%)
Query: 23 DVIESLLTAKAKNTILHINIISSERENVSTKFVEEIL--------EKCPALLL-----QV 69
LL + + + ++ ++ + E Q+
Sbjct: 92 TCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL 151
Query: 70 NAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKN 125
A+ G TPLH+A ++VR+L + A L +
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE------------------PTCGR 193
Query: 126 TALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKL 185
T LH AV + +L L
Sbjct: 194 TPLHLAVEAQAASVLEL------------------------------------------L 211
Query: 186 LEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYEL 245
L+ + G TP L A + + + + E
Sbjct: 212 LKAGAD-PTARMYGGRTP----------------LGSALLRPNPILARLLRAHGAPEPE- 253
Query: 246 VDNRGWNFLHYA 257
+ +
Sbjct: 254 DGGDKLSPCSSS 265
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-07
Identities = 23/178 (12%), Positives = 36/178 (20%), Gaps = 87/178 (48%)
Query: 65 LLLQ----VNAK----GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQ 115
LL +N G TPLHLA + ++ +L++ A A
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD------------PTA--- 220
Query: 116 MIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQT 175
T L A+ N L +L
Sbjct: 221 ----RMYGGRTPLGSALLRPNPILARL--------------------------------- 243
Query: 176 NSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVE 233
L E +P + D+ +
Sbjct: 244 ---------LRAHGAP-EPEDGGDKLSP----------------CSSSGSDSDSDNRD 275
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237 | Back alignment and structure |
|---|
Score = 79.4 bits (197), Expect = 1e-17
Identities = 51/254 (20%), Positives = 84/254 (33%), Gaps = 70/254 (27%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
+ +PLH AA+ GH DI +L++ A I+ + ++
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN------------IDT-------CSEDQ 44
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI----LF---KFRHLDLFRIQTNS 177
T L EA + +++ K LI D K L K H ++ +
Sbjct: 45 RTPLMEAAENNHLEAVKY-----LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQY---- 95
Query: 178 IYAALPKLLEKKKNLIKETDQYGWTPIQSTS------------------NIADKDRKMTA 219
LL + + D GWTP+ + NI D +
Sbjct: 96 -------LLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEEN-IC 147
Query: 220 LHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSL 279
LH AA G E +++ + V+ G + LH A + L + S
Sbjct: 148 LHWAAFSGCVDIAEILLAAKCDLHA-VNIHGDSPLHIAARENRYDCVVLFLSRD----SD 202
Query: 280 IDEGDAKGNTPLHV 293
+ + +G TPL
Sbjct: 203 VTLKNKEGETPLQC 216
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 2e-09
Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 85/191 (44%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
VN + G TP+ A ++ H D+V++L+ + + I +NE+
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD------------INI-------RDNEE 144
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
N LH A G VD+ ++
Sbjct: 145 NICLHWAAFSGCVDIAEI------------------------------------------ 162
Query: 185 LLEKKKNLIKETDQYGWTPIQSTS------------------NIADKDRKMTALHLAAGK 226
LL K + + + +G +P+ + + +K+ + T L A+
Sbjct: 163 LLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGE-TPLQCASLN 220
Query: 227 GDARTVERIIS 237
+ ++
Sbjct: 221 SQVWSALQMSK 231
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237 | Back alignment and structure |
|---|
Score = 45.9 bits (110), Expect = 4e-06
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 209 NIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRN 268
+ ++ K + LH AA G ++ L A + H+ ++
Sbjct: 5 KMEHQN-KRSPLHAAAEAGHVDICHMLVQAGANIDT-CSEDQRTPLMEAAENNHLEAVKY 62
Query: 269 LLENNSLARSLIDEGDAKGNTPLHVLAA 296
L++ +L+D DA+G+T LH LAA
Sbjct: 63 LIKAG----ALVDPKDAEGSTCLH-LAA 85
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 2e-17
Identities = 51/259 (19%), Positives = 83/259 (32%), Gaps = 74/259 (28%)
Query: 68 QVNAK---GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEK 124
+VNAK TPLH AA+ GH ++V++L+E A +
Sbjct: 72 KVNAKAKDDQTPLHCAARIGHTNMVKLLLE--NNAN----------------PNLATTAG 113
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILI-------FRDSDEKTNILF--KFRHLDLFRIQT 175
+T LH A G+V+ L+ T + K+ + + +
Sbjct: 114 HTPLHIAAREGHVETVLA-------LLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL-- 164
Query: 176 NSIYAALPKLLEKKKNLIKETDQYGWTPIQSTS------------------NIADKDRKM 217
LLE+ + + G TP+ + +
Sbjct: 165 ---------LLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN-GY 213
Query: 218 TALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLAR 277
T LH+AA + ++ +G LH A H + LL
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQ---- 268
Query: 278 SLIDEGDAKGNTPLHVLAA 296
+ + G+ G TPLH L A
Sbjct: 269 ANGNLGNKSGLTPLH-LVA 286
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 3e-17
Identities = 57/267 (21%), Positives = 94/267 (35%), Gaps = 80/267 (29%)
Query: 65 LLLQ----VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQM 116
LLQ N +TPLH+AA+ GH ++ + L++ AK + A
Sbjct: 32 NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK------------VNA---- 75
Query: 117 IRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILI-------FRDSDEKTNILF--KFRH 167
+ T LH A G+ ++ KL L+ + T + + H
Sbjct: 76 ---KAKDDQTPLHCAARIGHTNMVKL-------LLENNANPNLATTAGHTPLHIAAREGH 125
Query: 168 LDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTS------------------N 209
++ LLEK+ + + G+TP+ + N
Sbjct: 126 VETVLA-----------LLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173
Query: 210 IADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNL 269
A K+ +T LH+A + V+ ++ G+ LH A V R+L
Sbjct: 174 AAGKN-GLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSL 231
Query: 270 LENNSLARSLIDEGDAKGNTPLHVLAA 296
L+ + +G TPLH LAA
Sbjct: 232 LQYG----GSANAESVQGVTPLH-LAA 253
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 79.8 bits (198), Expect = 4e-17
Identities = 51/267 (19%), Positives = 88/267 (32%), Gaps = 80/267 (29%)
Query: 65 LLLQ----VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQM 116
LLL+ NA G TPLH+A + DIV++L+ R
Sbjct: 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS------------------- 204
Query: 117 IRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILI-------FRDSDEKTNILF--KFRH 167
T LH A V++ + L+ T + + H
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARS-------LLQYGGSANAESVQGVTPLHLAAQEGH 257
Query: 168 LDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTS------------------N 209
++ + LL K+ N ++ G TP+ + +
Sbjct: 258 AEMVAL-----------LLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305
Query: 210 IADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNL 269
+ T LH+A+ G+ + V+ ++ G++ LH A H + L
Sbjct: 306 ATTRMGY-TPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLL 363
Query: 270 LENNSLARSLIDEGDAKGNTPLHVLAA 296
L+N + +E + G TPL +A
Sbjct: 364 LKNG----ASPNEVSSDGTTPLA-IAK 385
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 1e-16
Identities = 55/267 (20%), Positives = 90/267 (33%), Gaps = 80/267 (29%)
Query: 65 LLLQ----VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQM 116
LL+ G TPLH+AAK+G + +L+ER A
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH------------------- 171
Query: 117 IRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILI-------FRDSDEKTNILF--KFRH 167
T LH AV H N+D+ KL L+ + T + K
Sbjct: 172 PNAAGKNGLTPLHVAVHHNNLDIVKL-------LLPRGGSPHSPAWNGYTPLHIAAKQNQ 224
Query: 168 LDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTS------------------N 209
+++ R LL+ + G TP+ + N
Sbjct: 225 VEVARS-----------LLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 272
Query: 210 IADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNL 269
+ +K T LHL A +G + +I + G+ LH A ++ ++ L
Sbjct: 273 LGNKSGL-TPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFL 330
Query: 270 LENNSLARSLIDEGDAKGNTPLHVLAA 296
L++ + ++ G +PLH AA
Sbjct: 331 LQHQ----ADVNAKTKLGYSPLH-QAA 352
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 2e-16
Identities = 49/247 (19%), Positives = 76/247 (30%), Gaps = 90/247 (36%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
G TPLH+A+ GH IV+ L++R A + N +
Sbjct: 7 GGGGGESGLTPLHVASFMGHLPIVKNLLQRGAS-------------------PNVSNVKV 47
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
T LH A G+ ++ K
Sbjct: 48 ETPLHMAARAGHTEVAKY------------------------------------------ 65
Query: 185 LLEKKKNLIKETDQYGWTPIQSTS------------------NIADKDRKMTALHLAAGK 226
LL+ K + + TP+ + N+A T LH+AA +
Sbjct: 66 LLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA-GHTPLHIAARE 123
Query: 227 GDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAK 286
G TV ++ + + +G+ LH A V LLE + + +
Sbjct: 124 GHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERD----AHPNAAGKN 178
Query: 287 GNTPLHV 293
G TPLHV
Sbjct: 179 GLTPLHV 185
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 7e-14
Identities = 46/255 (18%), Positives = 76/255 (29%), Gaps = 91/255 (35%)
Query: 65 LLLQ----VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQM 116
LLQ NA+ G TPLHLAA+ GH ++V +L+ + A
Sbjct: 230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG--------------- 274
Query: 117 IRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTN 176
N T LH G+V + +
Sbjct: 275 ----NKSGLTPLHLVAQEGHVPVADV---------------------------------- 296
Query: 177 SIYAALPKLLEKKKNLIKETDQYGWTPIQSTS------------------NIADKDRKMT 218
L++ + T + G+TP+ S N K +
Sbjct: 297 --------LIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL-GYS 346
Query: 219 ALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARS 278
LH AA +G V ++ E V + G L A ++ + ++L+ + S
Sbjct: 347 PLHQAAQQGHTDIVTLLLKNGASPNE-VSSDGTTPLAIAKRLGYI-SVTDVLKVVTDETS 404
Query: 279 LIDEGDAKGNTPLHV 293
+ D +
Sbjct: 405 FVLVSDKHRMSFPET 419
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 5e-17
Identities = 67/337 (19%), Positives = 112/337 (33%), Gaps = 99/337 (29%)
Query: 8 AASAGNSEPFKDMARDVIESLLTAKA--------KNTILHINIISSERENVSTKFVEEIL 59
AA +GN E ++ L K+T LH+ ++ V I+
Sbjct: 31 AARSGNEE-------KLMALLTPLNVNCHASDGRKSTPLHL---AAGYNRV------RIV 74
Query: 60 EKCPALLLQ----VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIE 111
+ LLLQ V+AK G PLH A +GH+++ +L++ A
Sbjct: 75 Q----LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC-------------- 116
Query: 112 AFRQMIRMVNNEKNTALHEAVSHGNVDLFKL---------KKTNN----LIL-IFRDSDE 157
+ ++ + T LHEA S V++ L + + + + E
Sbjct: 117 -----VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRE 171
Query: 158 KTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTS--------- 208
+ FK L + + K L + K+ Q T +
Sbjct: 172 RLTYEFKGHSLLQAAREADLAKVK--KTLALEIINFKQ-PQSHETALHCAVASLHPKRKQ 228
Query: 209 ------------NIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHY 256
N +KD T LH+AA + +E + K +D+ G LH
Sbjct: 229 VAELLLRKGANVNEKNKDFM-TPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHR 286
Query: 257 AMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
A ++ H+ R LL S +G T +
Sbjct: 287 AALAGHLQTCRLLLSYG----SDPSIISLQGFTAAQM 319
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 1e-09
Identities = 40/280 (14%), Positives = 68/280 (24%), Gaps = 114/280 (40%)
Query: 64 ALLL-----QVNAKGD----TPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAF 113
AL L + G+ L A ++ +L
Sbjct: 7 ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN---------------- 50
Query: 114 RQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRI 173
+ K+T LH A + V + +L L+ +D
Sbjct: 51 ---CHASDGRKSTPLHLAAGYNRVRIVQL-------LLQHGAD----------------- 83
Query: 174 QTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTS------------------NIADKDR 215
+ D+ G P+ + N D +
Sbjct: 84 -------------------VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124
Query: 216 KMTALHLAAGKGDARTVERIISE--NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273
T LH AA K ++S +P LV+ G + + A +L + +
Sbjct: 125 F-TPLHEAASKNRVEVCSLLLSHGADP---TLVNCHGKSAVDMAPTPELRERLTYEFKGH 180
Query: 274 SL-----------ARSLIDEG------DAKGNTPLHVLAA 296
SL + + T LH A
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALH-CAV 219
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 1e-08
Identities = 42/233 (18%), Positives = 69/233 (29%), Gaps = 100/233 (42%)
Query: 23 DVIESLLTAKAKN--------TILHINIISSERENVSTKFVEEILEKCPALLLQ----VN 70
++ L + N T LH + S + ++ E LLL+ VN
Sbjct: 192 AKVKKTLALEIINFKQPQSHETALHCAVASLHPKRK------QVAE----LLLRKGANVN 241
Query: 71 AK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNT 126
K TPLH+AA+ H D++ VL + AK + +++ T
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-------------------MNALDSLGQT 282
Query: 127 ALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLL 186
ALH A G++ +L L+ SD
Sbjct: 283 ALHRAALAGHLQTCRL-------LLSYGSD------------------------------ 305
Query: 187 EKKKNLIKETDQYGWTP-----------IQSTSNIADKDRKMTALHLAAGKGD 228
G+T + ++ + D L A+ GD
Sbjct: 306 ------PSIISLQGFTAAQMGNEAVQQILSESTPMRTSD-VDYRLLEASKAGD 351
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 6e-07
Identities = 29/239 (12%), Positives = 59/239 (24%), Gaps = 93/239 (38%)
Query: 23 DVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82
+ + +++L + ++ V++ L Q +T LH A
Sbjct: 171 ERLTYEF---KGHSLLQA----AREADL--AKVKKTLALEIINFKQPQ-SHETALHCAVA 220
Query: 83 FGHF---DIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVD 138
H + +L+ + A + N + T LH A + D
Sbjct: 221 SLHPKRKQVAELLLRKGAN-------------------VNEKNKDFMTPLHVAAERAHND 261
Query: 139 LFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQ 198
+ ++ L + + D
Sbjct: 262 VMEV-------LHKHGAK------------------------------------MNALDS 278
Query: 199 YGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYA 257
G T LH AA G +T ++S ++ +G+
Sbjct: 279 LGQTA----------------LHRAALAGHLQTCRLLLSYGSDP-SIISLQGFTAAQMG 320
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 7e-05
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 11/103 (10%)
Query: 199 YGWTPIQSTS-----NIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNF 253
+G + + + + +K L A + + + + N C D R
Sbjct: 3 FGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNC-HASDGRKSTP 61
Query: 254 LHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAA 296
LH A V ++ LL++ + + D G PLH A
Sbjct: 62 LHLAAGYNRVRIVQLLLQHG----ADVHAKDKGGLVPLH-NAC 99
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 3e-16
Identities = 47/309 (15%), Positives = 86/309 (27%), Gaps = 85/309 (27%)
Query: 6 FKAASAGNSEPFKDMARDVIESLLTAKAK------------NTILHINIISSERENVST- 52
F S G E ++E L T L +++ + +
Sbjct: 7 FSVVSRGVPE----ELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62
Query: 53 KFVEEILEKCPALLLQVNA-------KGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEE 105
+ +I + VNA +G + LH+A + V++L+E D
Sbjct: 63 MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE-----NGADVH 117
Query: 106 LENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKF 165
L F++ L A D+
Sbjct: 118 LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTY----------------------- 154
Query: 166 RHLDLFRIQTNSIYAALPKLLEKKKNL--IKETDQYGWTPIQSTSNIADKDRKMTALHLA 223
LLE ++ TD G T + + IAD + +AL +
Sbjct: 155 -------------------LLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195
Query: 224 AGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEG 283
G + R+ + E+ +++G L A + R++L+
Sbjct: 196 MYDGLLQMGARLCP-TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR----------- 243
Query: 284 DAKGNTPLH 292
+ G H
Sbjct: 244 EFSGAAAHH 252
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 9e-08
Identities = 38/245 (15%), Positives = 68/245 (27%), Gaps = 42/245 (17%)
Query: 75 TPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSH 134
L G + + L+E L ++ + T L +AV +
Sbjct: 4 DRLFSVVSRGVPEELTGLLE--YLRWNSKYLTDSAYTE--------GSTGKTCLMKAVLN 53
Query: 135 ---GNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAA------LPKL 185
G L+ I +DS ++ + ++ + A KL
Sbjct: 54 LQDGVNACIMP-----LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKL 108
Query: 186 LEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKC--Y 243
L + + + + L LAA V ++ +
Sbjct: 109 LVENGADVHLRACGRFFQKHQGTCFYF---GELPLSLAACTKQWDVVTYLLENPHQPASL 165
Query: 244 ELVDNRGWNFLHYAMVSFHVGQLRNLL----ENNSL--ARSLIDEG------DAKGNTPL 291
E D+ G LH ++ + L + L L + +G TPL
Sbjct: 166 EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPL 225
Query: 292 HVLAA 296
LAA
Sbjct: 226 K-LAA 229
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 4e-16
Identities = 47/262 (17%), Positives = 77/262 (29%), Gaps = 78/262 (29%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKN 125
GDTPLH+A G+ V L+ Q G E + + NN +
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNL--FQQGGRE------------LDIYNNLRQ 47
Query: 126 TALHEAVSHGNVDLFKLKKTNNLILIF-------RDSDEKTNILF--KFRHLDLFRIQTN 176
T LH AV + +L L+ D +T + R R
Sbjct: 48 TPLHLAVITTLPSVVRL-------LVTAGASPMALDRHGQTAAHLACEHRSPTCLRA--- 97
Query: 177 SIYAALPKLLEKKKNL---IKETDQYGWTPIQSTS----------------NIADKDRK- 216
LL+ ++ + G T + +I D K
Sbjct: 98 --------LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS 149
Query: 217 -MTALHLAAGKGDARTVERIISE----NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLE 271
+ L A V+ ++ N + G + LH A + +R L+
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQ-----MYSGSSALHSASGRGLLPLVRTLVR 204
Query: 272 NNSLARSLIDEGDAKGNTPLHV 293
+ + + +TPL V
Sbjct: 205 SG----ADSSLKNCHNDTPLMV 222
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 2e-09
Identities = 41/271 (15%), Positives = 74/271 (27%), Gaps = 113/271 (41%)
Query: 23 DVIESLLTAKAK--------NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAK-- 72
V+ L+TA A T H+ E+ S + +L+ L + A+
Sbjct: 60 SVVRLLVTAGASPMALDRHGQTAAHLAC-----EHRSPTCLRALLDSAAPGTLDLEARNY 114
Query: 73 -GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKN----- 125
G T LH+A + V++L+ER A + + +
Sbjct: 115 DGLTALHVAVNTECQETVQLLLERGADI-----------------------DAVDIKSGR 151
Query: 126 TALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKL 185
+ L AV + ++ + +L L
Sbjct: 152 SPLIHAVENNSLSMVQL------------------------------------------L 169
Query: 186 LEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE----NPK 241
L+ N + G + LH A+G+G V ++ + K
Sbjct: 170 LQHGAN-VNAQMYSGSSA----------------LHSASGRGLLPLVRTLVRSGADSSLK 212
Query: 242 CYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272
+ L A + LR
Sbjct: 213 -----NCHNDTPLMVARSRRVIDILRGKATR 238
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 6e-08
Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 28/126 (22%)
Query: 192 LIKETDQYGWTPIQSTS----------------------NIADKDRKMTALHLAAGKGDA 229
+ D+ G TP+ +I + R+ T LHLA
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLP 59
Query: 230 RTVERIISE--NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKG 287
V +++ +P +D G H A LR LL++ + ++ + G
Sbjct: 60 SVVRLLVTAGASP---MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116
Query: 288 NTPLHV 293
T LHV
Sbjct: 117 LTALHV 122
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 7e-06
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 209 NIADKDRKMTALHLAAGKGDARTVERIISENPKCY---ELVDNRGWNFLHYAMVSFHVGQ 265
AD+D T LH+A +G+ V R+++ + ++ +N LH A+++
Sbjct: 3 TRADEDGD-TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 266 LRNLLENNSLARSLIDEGDAKGNTPLHVLAA 296
+R L+ A D G T H LA
Sbjct: 62 VRLLVTAG--AS--PMALDRHGQTAAH-LAC 87
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 5e-16
Identities = 52/273 (19%), Positives = 88/273 (32%), Gaps = 93/273 (34%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTAL 128
+ + L A + D+V+ L+E A + + T L
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE------------------EEGGWTPL 43
Query: 129 HEAVSHGNVDLFKLKKTNNLILI-------FRDSDEKTNILF--KFRHLDLFRIQTNSIY 179
H AV D+ +L L+ R + T L + L ++
Sbjct: 44 HNAVQMSREDIVEL-------LLRHGADPVLRKKNGATPFLLAAIAGSVKLLKL------ 90
Query: 180 AALPKLLEKKKNLIKETDQYGWTPIQSTS------------------NIADKDRK----- 216
L K + + E D YG+T + N+ K ++
Sbjct: 91 -----FLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL 144
Query: 217 ----MTALHLAAGKGDARTVERIISE-----NPKCYELVDNRGWNFLHYAMVSFHVGQLR 267
TAL AA KG ++ ++ E N DN G N L +A++S +
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNAC-----DNMGRNALIHALLSSDDSDVE 199
Query: 268 N----LLENNSLARSLIDEGDAKGNTPLHVLAA 296
LL++ + ++ +G TPL LA
Sbjct: 200 AITHLLLDHG----ADVNVRGERGKTPLI-LAV 227
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 3e-13
Identities = 46/256 (17%), Positives = 73/256 (28%), Gaps = 92/256 (35%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
+ G TP LAA G ++++ + + A + +
Sbjct: 65 PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD------------VNE-------CDFYG 105
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
TA EA +G V K L R ++
Sbjct: 106 FTAFMEAAVYGKVKALKF-------LYKRGAN--------------------------VN 132
Query: 185 LLEKKKNLIKETDQYGWTPIQSTS-------------------NIADKDRKMTALHLAAG 225
L K K + + G T + + N D + AL A
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR-NALIHALL 191
Query: 226 KGDARTVERI----ISE----NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLAR 277
D VE I + N + RG L A+ H+G ++ LLE
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVR-----GERGKTPLILAVEKKHLGLVQRLLEQE---H 243
Query: 278 SLIDEGDAKGNTPLHV 293
I++ D+ G T L +
Sbjct: 244 IEINDTDSDGKTALLL 259
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
Score = 63.6 bits (156), Expect = 7e-12
Identities = 37/199 (18%), Positives = 65/199 (32%), Gaps = 46/199 (23%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
VN G T AA +G ++ L +R A + N ++ +
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV---------NLRRKTKEDQERLRKGG 148
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIF------RDSDEKTNILFKFRHLDLFRIQTNSI 178
TAL +A G+V++ K+ L+ D+ + + L + +
Sbjct: 149 ATALMDAAEKGHVEVLKI-----LLDEMGADVNACDNMGRNAL-----IHALLSSDDSDV 198
Query: 179 YAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE 238
A LL+ + + + G TP L LA K V+R++ +
Sbjct: 199 EAITHLLLDHGAD-VNVRGERGKTP----------------LILAVEKKHLGLVQRLLEQ 241
Query: 239 NPKCYELVDNRGWNFLHYA 257
D+ G L A
Sbjct: 242 EHIEINDTDSDGKTALLLA 260
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 1e-07
Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 42/136 (30%)
Query: 23 DVIESLLT-------AKAKN--TILHINIISSERENVSTKFVEEILEKCPALLLQ----V 69
+V++ LL A L ++SS+ +V E I LLL V
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV-----EAITH----LLLDHGADV 212
Query: 70 NAK---GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNT 126
N + G TPL LA + H +V+ L+E Q E I +++ T
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLE-----QEHIE-----IND-------TDSDGKT 255
Query: 127 ALHEAVSHGNVDLFKL 142
AL AV + +L
Sbjct: 256 ALLLAVELKLKKIAEL 271
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 26/177 (14%), Positives = 39/177 (22%), Gaps = 85/177 (48%)
Query: 69 VNAK---GDTPLHLAAKFGHFD----IVRVLIER-AKLAQRGDEELENRIEAFRQMIRMV 120
VNA G L A I +L++ A + +
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-------------------VNVR 215
Query: 121 NNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYA 180
T L AV ++ L +
Sbjct: 216 GERGKTPLILAVEKKHLGLVQR-------------------------------------- 237
Query: 181 ALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS 237
LLE++ I +TD G T L LA + E +
Sbjct: 238 ----LLEQEHIEINDTDSDGKTA----------------LLLAVELKLKKIAELLCK 274
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 3e-05
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 23/99 (23%)
Query: 8 AASAGNSEPFKDMARDVIESLLTAKAK--------NTILHINIISSERENVSTKFVEEIL 59
A + + + + LL A T L + + E++++ V+ +L
Sbjct: 189 ALLSSDDSDVEA----ITHLLLDHGADVNVRGERGKTPLIL---AVEKKHLGL--VQRLL 239
Query: 60 EKCPALLLQVNAK---GDTPLHLAAKFGHFDIVRVLIER 95
E+ ++N G T L LA + I +L +R
Sbjct: 240 EQEHI---EINDTDSDGKTALLLAVELKLKKIAELLCKR 275
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 5e-04
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 211 ADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLL 270
A + L A D V++++ + GW LH A+ + LL
Sbjct: 1 AAVE-DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59
Query: 271 ENNSLARSLIDEGDAKGNTPLHV 293
+ + G TP +
Sbjct: 60 RHG----ADPVLRKKNGATPFLL 78
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228 | Back alignment and structure |
|---|
Score = 74.0 bits (183), Expect = 8e-16
Identities = 46/260 (17%), Positives = 72/260 (27%), Gaps = 84/260 (32%)
Query: 55 VEEILEKCPALLLQVNAK---GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIE 111
V+E+L P+ + K G PLH + F +I L+ + + D
Sbjct: 18 VQELLHSKPS---LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY------- 67
Query: 112 AFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLF 171
++ T H A S GN+++ K L D
Sbjct: 68 --------PDDSGWTPFHIACSVGNLEVVKS-----LYDRPLKPD--------------- 99
Query: 172 RIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTS------------------NIADK 213
+ + G T + I DK
Sbjct: 100 ---------------------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
Query: 214 DRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273
+ LH AA G + +E + D +GW L +A+ H L+E
Sbjct: 139 FNQ-IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY 197
Query: 274 SLARSLIDEGDAKGNTPLHV 293
+ D D KG V
Sbjct: 198 G---AEYDLVDNKGAKAEDV 214
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228 | Back alignment and structure |
|---|
Score = 63.2 bits (155), Expect = 6e-12
Identities = 37/193 (19%), Positives = 56/193 (29%), Gaps = 81/193 (41%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
+N G T LHLA F++ + LIE A +R+ +
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-------------------VRIKDKFN 140
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
LH A S G++ L +L
Sbjct: 141 QIPLHRAASVGSLKLIEL------------------------------------------ 158
Query: 185 LLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYE 244
L K+ + D+ GWTP L A +G ++ + Y+
Sbjct: 159 LCGLGKSAVNWQDKQGWTP----------------LFHALAEGHGDAAVLLVEKYGAEYD 202
Query: 245 LVDNRGWNFLHYA 257
LVDN+G A
Sbjct: 203 LVDNKGAKAEDVA 215
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 8e-07
Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 21/115 (18%)
Query: 184 KLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE--NPK 241
+LL K +L+ + DQ G P LH + ++S+ N
Sbjct: 20 ELLHSKPSLLLQKDQDGRIP----------------LHWSVSFQAHEITSFLLSKMENVN 63
Query: 242 CYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAA 296
+ D+ GW H A ++ +++L + +++ +G T LH LA
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD--LNKITNQGVTCLH-LAV 115
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228 | Back alignment and structure |
|---|
Score = 45.9 bits (110), Expect = 5e-06
Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 36/129 (27%)
Query: 23 DVIESLLT------AKAKN--TILHINIISSERENVSTKFVEEILEKCPALLLQVNAK-- 72
+V + L+ K K LH S K +E + + VN +
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHRAA-----SVGSLKLIELLCGLGKS---AVNWQDK 172
Query: 73 -GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEA 131
G TPL A GH D +L+E+ A+ +V+N+ A A
Sbjct: 173 QGWTPLFHALAEGHGDAAVLLVEKYG-AE----------------YDLVDNKGAKAEDVA 215
Query: 132 VSHGNVDLF 140
++ F
Sbjct: 216 LNEQVKKFF 224
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 9e-16
Identities = 37/266 (13%), Positives = 67/266 (25%), Gaps = 85/266 (31%)
Query: 65 LLLQ----VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQM 116
L++ + G T LHLA KFG D + L
Sbjct: 38 RLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH------------------ 79
Query: 117 IRMVNNEKN--TALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQ 174
+ + +H AV DL L+ + Q
Sbjct: 80 -----SLWHGQKPIHLAVMANKTDLVVA-----LV------EGAKERG-----------Q 112
Query: 175 TNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTS--------------------NIADKD 214
E + G T + DK
Sbjct: 113 MPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA 172
Query: 215 RKMTALHLAAGKGDARTVERIISENPKCY----ELVDNRGWNFLHYAMVSFHVGQLRNLL 270
+ T L A + ++ ++ P + + +G + LH+A++ +
Sbjct: 173 DE-TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV 231
Query: 271 ENNSLARSLIDEGDAKGNTPLHVLAA 296
E ++ D + PL+ L+
Sbjct: 232 EMG----IDVNMEDNEHTVPLY-LSV 252
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 8e-15
Identities = 46/249 (18%), Positives = 72/249 (28%), Gaps = 63/249 (25%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
+H+AA+ G D VR LIE + N
Sbjct: 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVS-------------------PTIQNRFG 53
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
TALH A G VD K L Q A +
Sbjct: 54 CTALHLACKFGCVDTAKY-------LASVGEVHSLW--------HG---QKPIHLAVMAN 95
Query: 185 LLEKKKNLIKETDQYGWTPIQSTS------------NIADKDRKMTALHLAAGKGDAR-- 230
+ L++ + G P + ++ + TALH G G
Sbjct: 96 KTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQ-TALHWCVGLGPEYLE 154
Query: 231 TVERIISE--NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSL-IDEGDAKG 287
++ ++ +P D L AM + L +++ SL +D + +G
Sbjct: 155 MIKILVQLGASP---TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQG 211
Query: 288 NTPLHVLAA 296
N+ LH A
Sbjct: 212 NSHLH-WAI 219
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 3e-12
Identities = 30/309 (9%), Positives = 68/309 (22%), Gaps = 115/309 (37%)
Query: 23 DVIESLLTAKAKN--TILHINIISSERENVSTKFVEEILEKCPALLLQVNAK---GDTPL 77
D++ +L+ + + ERE + + K G T L
Sbjct: 98 DLVVALVEGAKERGQMPESLLNECDEREVNE---------------IGSHVKHCKGQTAL 142
Query: 78 HLAAKFG--HFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSH 134
H G + +++++L++ A + T L A+
Sbjct: 143 HWCVGLGPEYLEMIKILVQLGAS-------------------PTAKDKADETPLMRAMEF 183
Query: 135 GNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIK 194
N + L ++ K +
Sbjct: 184 RNREALDL-------MMDTVPS-------------------------------KSSLRLD 205
Query: 195 ETDQYGWTPIQSTS------------------NIADKDRKMTALHLAAGKGDARTVERII 236
++ G + + N+ D + L+L+ + ++
Sbjct: 206 YANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHT-VPLYLSVRAAMVLLTKELL 264
Query: 237 SENPKCYEL------------VDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGD 284
+ +F+ A L+ L E +
Sbjct: 265 QKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL----DEVVRSL 320
Query: 285 AKGNTPLHV 293
G
Sbjct: 321 NTGAGGAVK 329
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 1e-11
Identities = 26/201 (12%), Positives = 51/201 (25%), Gaps = 53/201 (26%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
++ G++ LH A D+ +E + +NE
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAMRFVEMGID------------VNM-------EDNEH 244
Query: 125 NTALHEAVSHGNVDLFK--LKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAAL 182
L+ +V V L K L+KT+ ++ T +L AA
Sbjct: 245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVW-----LDFVPAAAD 299
Query: 183 P------KLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERII 236
P +LL++K + + + G K +
Sbjct: 300 PSKQEVLQLLQEKLDEVVRSLNTGAGG----------------AVKRKKKAAPAVKRMKL 343
Query: 237 SENPKCYELVDNRGWNFLHYA 257
+ + +
Sbjct: 344 APSAPV-RTRSRSRARSSAVS 363
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240 | Back alignment and structure |
|---|
Score = 73.6 bits (182), Expect = 2e-15
Identities = 42/260 (16%), Positives = 80/260 (30%), Gaps = 73/260 (28%)
Query: 68 QVNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNE 123
+ + A ++G ++ R L+E +R + E
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYD-------------------VRQPDKE 41
Query: 124 KNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILF--------KFRHLDLFRIQT 175
T LH A + +DL K I D+ L + HL +
Sbjct: 42 NVTLLHWAAINNRIDLVKY-----YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ-- 94
Query: 176 NSIYAALPKLLEKKKNLIKETDQYGWTPIQSTS------------------NIADKDRKM 217
L++ + D G + I + ++ D++ M
Sbjct: 95 ---------LMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN-GM 143
Query: 218 TALHLAAGKGDAR-TVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLA 276
T L AA + + +++ N LH+A+++ + + LLE
Sbjct: 144 TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG--- 200
Query: 277 RSLIDEGDAKGNTPLHVLAA 296
+ +D + KG + L LA
Sbjct: 201 -ANVDAQNIKGESALD-LAK 218
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 2e-14
Identities = 46/251 (18%), Positives = 78/251 (31%), Gaps = 80/251 (31%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
V T LH AA D+V+ I + A + Q G +
Sbjct: 35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG------------------GDLN 76
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILI-----FRDSDEKTNILF--KFRHLDLFRIQTNS 177
+T LH A G++ + L+ D + + I +F H +
Sbjct: 77 STPLHWATRQGHLSMVVQ-----LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAY---- 127
Query: 178 IYAALPKLLEKKKNLIKETDQYGWTPIQSTS-------------------NIADKDRKMT 218
L+ K ++ + DQ G TP+ + N+ DK K T
Sbjct: 128 -------LIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNT 179
Query: 219 ALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSL--A 276
ALH A G+ + ++ + +G + L A + ++
Sbjct: 180 ALHWAVLAGNTTVISLLLEAGANVDA-QNIKGESALDLAK------------QRKNVWMI 226
Query: 277 RSLIDEGDAKG 287
L + AKG
Sbjct: 227 NHLQEARQAKG 237
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 3e-15
Identities = 44/279 (15%), Positives = 80/279 (28%), Gaps = 49/279 (17%)
Query: 36 TILHINIISSERENVSTKFVEEILEKCPALLLQVNAK----GDTPLHLA---AKFGHFDI 88
+ ++ + + L++ L K G T L A G D
Sbjct: 15 RSIFD--AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72
Query: 89 VRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNL 148
+ +L++ A+ + ++ + + TALH A+ N+ L L
Sbjct: 73 IALLLDVAR-------KTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTL------ 119
Query: 149 ILIFR--DSDEKTNILFKFRHLDLFRI---QTNSIYAALPK-------LLEKKKNL--IK 194
L+ D N F + + AA LL+ I
Sbjct: 120 -LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS 178
Query: 195 ETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFL 254
D G T + + +AD T + ++ K E+ + +G L
Sbjct: 179 ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH-PTLKLEEITNRKGLTPL 237
Query: 255 HYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
A S +G L +L+ + H
Sbjct: 238 ALAASSGKIGVLAYILQR-----------EIHEPECRHA 265
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 5e-10
Identities = 28/185 (15%), Positives = 47/185 (25%), Gaps = 66/185 (35%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAV 132
G+ PL LAA IV+ L++ + I ++ NT LH V
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNS---------------WQPADISARDSVGNTVLHALV 192
Query: 133 SHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192
+ + T + + ++L L
Sbjct: 193 EVADNTV---------------------------------DNTKFVTSMYNEILILGAKL 219
Query: 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWN 252
I ++ +T L LAA G + I+ +
Sbjct: 220 HPTLKL---------EEITNRKG-LTPLALAASSGKIGVLAYILQR--------EIHEPE 261
Query: 253 FLHYA 257
H A
Sbjct: 262 CRHAA 266
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 6e-09
Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 35/114 (30%)
Query: 35 NTILHINIISSERENVSTKFVEEI----------LEKCPALLLQVNAKGDTPLHLAAKFG 84
NT+LH + ++ +TKFV + L L N KG TPL LAA G
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244
Query: 85 HFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVD 138
++ +++R + H A H +
Sbjct: 245 KIGVLAYILQR-------------------------EIHEPECRHAAAHHHHHH 273
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-14
Identities = 52/254 (20%), Positives = 83/254 (32%), Gaps = 77/254 (30%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
+N G T LH A + D+V+ L+E A I +NE
Sbjct: 66 INYANVDGLTALHQACIDDNVDMVKFLVENGAN------------INQ-------PDNEG 106
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFR-------DSDEKT--NILFKFRHLDLFRIQT 175
LH A S G +D+ + LI + +S+ T +I + +L +
Sbjct: 107 WIPLHAAASCGYLDIAEY-------LISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN-- 157
Query: 176 NSIYAALPKLLEKKKNLIKETDQYGWTP---------IQSTSNIADKDRK-MTALHLAAG 225
+ ++ I+ + N + TALH+AA
Sbjct: 158 ---------EVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA 208
Query: 226 KGDARTVERIISE----NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN--NSLARSL 279
KG ++ +I N K D GW LH A R L+EN +
Sbjct: 209 KGYTEVLKLLIQARYDVNIK-----DYDGWTPLHAAAHWGKEEACRILVENLCD------ 257
Query: 280 IDEGDAKGNTPLHV 293
++ + G T V
Sbjct: 258 MEAVNKVGQTAFDV 271
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 9e-13
Identities = 37/258 (14%), Positives = 65/258 (25%), Gaps = 86/258 (33%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEE--------LENRIEAFRQMIR--- 118
+AK L G + + + K + ++ E +++
Sbjct: 5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA 64
Query: 119 ---MVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQT 175
N + TALH+A NVD+ K
Sbjct: 65 DINYANVDGLTALHQACIDDNVDMVKF--------------------------------- 91
Query: 176 NSIYAALPKLLEKKKNLIKETDQYGWTP----------------IQSTSNIADKDRK-MT 218
L+E N I + D GW P I +++ + + T
Sbjct: 92 ---------LVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT 141
Query: 219 ALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARS 278
L +A + ++ ++ E + + N
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN---------- 191
Query: 279 LIDEGDAKGNTPLHVLAA 296
G T LHV AA
Sbjct: 192 -DVRHAKSGGTALHV-AA 207
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 3e-07
Identities = 25/204 (12%), Positives = 52/204 (25%), Gaps = 61/204 (29%)
Query: 117 IRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN----ILF--KFRHLDL 170
++M + ++ G+ + ++ + + K + L +
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEP-----PVVKRKKTKVKFDDGAVFLAACSSGDTEE 55
Query: 171 FRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTS------------------NIAD 212
LLE+ + I + G T + N D
Sbjct: 56 VLR-----------LLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 213 KDRKMTALHLAAGKGDARTVERIISE--NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLL 270
+ LH AA G E +IS+ + V++ G L A
Sbjct: 104 NE-GWIPLHAAASCGYLDIAEYLISQGAHV---GAVNSEGDTPLDIAE------------ 147
Query: 271 ENNSL--ARSLIDEGDAKGNTPLH 292
E ++ ++
Sbjct: 148 EEAMEELLQNEVNRQGVDIEAARK 171
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 4e-05
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 25/92 (27%)
Query: 65 LLLQ----VNAK---GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMI 117
LL+Q VN K G TPLH AA +G + R+L+E L +
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE--NLCD----------------M 258
Query: 118 RMVNNEKNTALHEAVSHGNVDLFKLKKTNNLI 149
VN TA A L +L+K NL+
Sbjct: 259 EAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 1e-04
Identities = 26/226 (11%), Positives = 62/226 (27%), Gaps = 95/226 (42%)
Query: 23 DVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQ----VNAK---GDT 75
+++++ + + + I + R+ + + + L G T
Sbjct: 153 ELLQNEVNRQGVD-------IEAARKEEERIMLRDARQ----WLNSGHINDVRHAKSGGT 201
Query: 76 PLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHG 135
LH+AA G+ +++++LI+ R D + + + + T LH A G
Sbjct: 202 ALHVAAAKGYTEVLKLLIQ-----ARYD-------------VNIKDYDGWTPLHAAAHWG 243
Query: 136 NVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKE 195
+ ++ L+E + ++
Sbjct: 244 KEEACRI------------------------------------------LVENLCD-MEA 260
Query: 196 TDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241
++ G T +A E +N
Sbjct: 261 VNKVGQTA----------------FDVADEDILGYLEELQKKQNLL 290
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253 | Back alignment and structure |
|---|
Score = 68.6 bits (169), Expect = 8e-14
Identities = 48/296 (16%), Positives = 85/296 (28%), Gaps = 104/296 (35%)
Query: 31 AKAKN--TILHI--------NIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80
+ + T L I +SE E + + + + + +L Q + G+T LHLA
Sbjct: 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64
Query: 81 AKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDL 139
A++ D + L+E A + +N T LH AVS +
Sbjct: 65 ARYSRSDAAKRLLEASAD-------------------ANIQDNMGRTPLHAAVSADAQGV 105
Query: 140 FKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQY 199
F++ L+ + +
Sbjct: 106 FQI------------------------------------------LIRNRATDLDARMHD 123
Query: 200 GWTPIQSTS------------------NIADKDRKMTALHLAAGKGDARTVERIISE--- 238
G TP+ + N D K +ALH AA + ++
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAVVLLKNGAN 182
Query: 239 -NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
+ + +NR L A + LL++ + D D P +
Sbjct: 183 KDMQ-----NNREETPLFLAAREGSYETAKVLLDHFAN----RDITDHMDRLPRDI 229
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-08
Identities = 30/193 (15%), Positives = 52/193 (26%), Gaps = 85/193 (44%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
++A+ G TPL LAA+ ++ LI A + A V++
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHAD------------VNA-------VDDLG 157
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
+ALH A + NVD +
Sbjct: 158 KSALHWAAAVNNVDAAVV------------------------------------------ 175
Query: 185 LLEKKKNLIKETDQYGWTPIQSTS------------------NIADKDRKMTALHLAAGK 226
LL+ N + TP+ + +I D + +A +
Sbjct: 176 LLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR-LPRDIAQER 233
Query: 227 GDARTVERIISEN 239
V + E+
Sbjct: 234 MHHDIVRLLDLEH 246
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 6e-07
Identities = 35/180 (19%), Positives = 54/180 (30%), Gaps = 58/180 (32%)
Query: 121 NNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYA 180
+ T L A G E N + +
Sbjct: 7 GPDGFTPLMIASCSGG------------------GLETGNSEEEEDAPAVISD------- 41
Query: 181 ALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE-- 238
+ + +L +TD+ G T LHLAA + +R++
Sbjct: 42 ----FIYQGASLHNQTDRTGETA----------------LHLAARYSRSDAAKRLLEASA 81
Query: 239 --NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAA 296
N + DN G LH A+ + G + L+ N + +D G TPL LAA
Sbjct: 82 DANIQ-----DNMGRTPLHAAVSADAQGVFQILIRNRATD---LDARMHDGTTPLI-LAA 132
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 1e-13
Identities = 34/251 (13%), Positives = 66/251 (26%), Gaps = 100/251 (39%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTAL 128
+P+H AA GH +R LI + + ++ + + L
Sbjct: 56 AVSDWSPMHEAAIHGHQLSLRNLISQGWA-------------------VNIITADHVSPL 96
Query: 129 HEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEK 188
HEA G++ K+ LL+
Sbjct: 97 HEACLGGHLSCVKI------------------------------------------LLKH 114
Query: 189 KKNLIKETDQYGWTPIQSTS----------------NIADKDRKMTALHLAAGKGDARTV 232
+ TP+ + ++ + + +H AA +G V
Sbjct: 115 GAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECV 173
Query: 233 ERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSL--ARSLIDEG-----DA 285
+I+ + + L+ A EN + L++ G
Sbjct: 174 NSLIAYGGNI-DHKISHLGTPLYLA------------CENQQRACVKKLLESGADVNQGK 220
Query: 286 KGNTPLHVLAA 296
++PLH
Sbjct: 221 GQDSPLH-AVV 230
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 1e-11
Identities = 32/232 (13%), Positives = 62/232 (26%), Gaps = 93/232 (40%)
Query: 68 QVNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNE 123
QVN TPL A G +D V +L++ A ++ ++
Sbjct: 117 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS------------VQP--------ESD 156
Query: 124 KNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALP 183
+ +HEA G+V+
Sbjct: 157 LASPIHEAARRGHVECVNS----------------------------------------- 175
Query: 184 KLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE--NPK 241
L+ N I + TP L+LA V++++ +
Sbjct: 176 -LIAYGGN-IDHKISHLGTP----------------LYLACENQQRACVKKLLESGADVN 217
Query: 242 CYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
+ LH + + L++ + +A+G P+ +
Sbjct: 218 Q----GKGQDSPLHAVVRTASEELACLLMDFG----ADTQAKNAEGKRPVEL 261
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 9e-08
Identities = 26/202 (12%), Positives = 45/202 (22%), Gaps = 91/202 (45%)
Query: 65 LLLQ----VNAK--GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMI 117
LLLQ V + +P+H AA+ GH + V LI I+
Sbjct: 143 LLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN------------IDH----- 185
Query: 118 RMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNS 177
+ T L+ A + K
Sbjct: 186 --KISHLGTPLYLACENQQRACVKK----------------------------------- 208
Query: 178 IYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS 237
LLE ++ + +P LH ++
Sbjct: 209 -------LLESGADV--NQGKGQDSP----------------LHAVVRTASEELACLLMD 243
Query: 238 E--NPKCYELVDNRGWNFLHYA 257
+ + + G +
Sbjct: 244 FGADT---QAKNAEGKRPVELV 262
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 9e-07
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 22/74 (29%)
Query: 68 QVNAK--GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
VN D+PLH + ++ +L++ A + N E
Sbjct: 215 DVNQGKGQDSPLHAVVRTASEELACLLMDFGAD-------------------TQAKNAEG 255
Query: 125 NTALHEAVSHGNVD 138
+ +
Sbjct: 256 KRPVELVPPESPLA 269
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 5e-06
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 23/114 (20%)
Query: 194 KETDQYGWTP----------IQSTSNIADKDRKMTALHLAAGKGDARTVERIISE----N 239
K+ G P + S + D + +H AA G ++ +IS+ N
Sbjct: 27 KQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN 86
Query: 240 PKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
+ LH A + H+ ++ LL++ + ++ A +TPL
Sbjct: 87 II-----TADHVSPLHEACLGGHLSCVKILLKHG----AQVNGVTADWHTPLFN 131
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223 | Back alignment and structure |
|---|
Score = 67.4 bits (166), Expect = 2e-13
Identities = 41/256 (16%), Positives = 67/256 (26%), Gaps = 109/256 (42%)
Query: 70 NAK---GDTPLHLAAKFGHFDIVRVLIER-----AKLAQRGDEELENRIEAFRQMIRMVN 121
N G+T LHLAA++ D + L+E + +
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-----------------------D 55
Query: 122 NEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAA 181
N T LH AVS +F++
Sbjct: 56 NMGRTPLHAAVSADAQGVFQI--------------------------------------- 76
Query: 182 LPKLLEKKKNLIKETDQYGWTPIQSTS------------------NIADKDRKMTALHLA 223
L+ + + G TP+ + N D K +ALH A
Sbjct: 77 ---LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWA 132
Query: 224 AGKGDARTVERIISE----NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN--NSLAR 277
A + ++ + + +NR L A + LL++ N
Sbjct: 133 AAVNNVDAAVVLLKNGANKDMQ-----NNREETPLFLAAREGSYETAKVLLDHFAN---- 183
Query: 278 SLIDEGDAKGNTPLHV 293
D D P +
Sbjct: 184 --RDITDHMDRLPRDI 197
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223 | Back alignment and structure |
|---|
Score = 57.0 bits (139), Expect = 7e-10
Identities = 38/234 (16%), Positives = 60/234 (25%), Gaps = 106/234 (45%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
++A+ G TPL LAA+ ++ LI A + A V++
Sbjct: 85 LDARMHDGTTPLILAARLAVEGMLEDLINSHAD------------VNA-------VDDLG 125
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
+ALH A + NVD +
Sbjct: 126 KSALHWAAAVNNVDAAVV------------------------------------------ 143
Query: 185 LLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE----NP 240
LL+ N + TP L LAA +G T + ++ +
Sbjct: 144 LLKNGAN-KDMQNNREETP----------------LFLAAREGSYETAKVLLDHFANRDI 186
Query: 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSL--ARSLIDEGDAKGNTPLH 292
D+ A E R L + + LH
Sbjct: 187 T-----DHMDRLPRDIAQ------------ERMHHDIVRLLDEYN-LVRSPQLH 222
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223 | Back alignment and structure |
|---|
Score = 45.1 bits (108), Expect = 7e-06
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 29/116 (25%)
Query: 185 LLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE----NP 240
+ + +L +TD+ G T LHLAA + +R++ N
Sbjct: 10 FIYQGASLHNQTDRTGETA----------------LHLAARYSRSDAAKRLLEASADANI 53
Query: 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAA 296
+ DN G LH A+ + G + L+ N + + +D G TPL LAA
Sbjct: 54 Q-----DNMGRTPLHAAVSADAQGVFQILIRNRA---TDLDARMHDGTTPLI-LAA 100
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 2e-13
Identities = 38/231 (16%), Positives = 66/231 (28%), Gaps = 54/231 (23%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
T LH A GH +IV L++ + ++
Sbjct: 33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP------------VND-------KDDAG 73
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
+ LH A S G ++ K + + + T + + +
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPL----------HYAASKNRHEIAV 123
Query: 185 LLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYE 244
+L + D Y T +H AA KG+ + V ++
Sbjct: 124 MLLEGGANPDAKDHYDATA----------------MHRAAAKGNLKMVHILLFYKASTNI 167
Query: 245 LVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLA 295
D G LH A V + + L+ + I + + TPL V
Sbjct: 168 -QDTEGNTPLHLACDEERVEEAKFLVTQG----ASIYIENKEEKTPLQVAK 213
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 2e-13
Identities = 44/319 (13%), Positives = 86/319 (26%), Gaps = 99/319 (31%)
Query: 8 AASAGNSEPFKDMARDVIESLLTAKAK-------NTILHINIISSERENVSTKFVEEILE 60
+AG+ + E + T+LH + + E+++
Sbjct: 100 TEAAGSYA--------ITEPITRESVNIIDPRHNRTVLHW---IASNSSAEK--SEDLIV 146
Query: 61 KCPALLLQ----VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEA 112
+ VNA +TPL LA +V L++ A
Sbjct: 147 HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD------------PTI 194
Query: 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIF--------RDSDEKTNILF- 163
N + +ALH+A ++ + + ++ D + T ++
Sbjct: 195 -------YNKSERSALHQAAANRDFGMMVY-----MLNSTKLKGDIEELDRNGMTALMIV 242
Query: 164 -KFRHLDLFRIQTNSIYAALPKLL--------EKKKNLIKETDQYGWTPIQSTSNIADKD 214
D KLL G T
Sbjct: 243 AHNEGRDQVAS---------AKLLVEKGAKVDYDGAARKDSEKYKGRTA----------- 282
Query: 215 RKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNS 274
LH AA + V+ ++ E + D G + A + + L++
Sbjct: 283 -----LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG- 336
Query: 275 LARSLIDEGDAKGNTPLHV 293
+ ++ DA +T +
Sbjct: 337 ---ASVEAVDATDHTARQL 352
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 4e-13
Identities = 34/257 (13%), Positives = 69/257 (26%), Gaps = 63/257 (24%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAV 132
P G+ + ++ + E LH
Sbjct: 61 SLYPNPQGYGNGNDFLGDFNHTNLQIPTEPE------------------PESPIKLHTE- 101
Query: 133 SHGNVDLFKLKKTNNLIL----IFRDSDEKT--NILFKFRHLDLFRIQTNSIYAALPKLL 186
+ G+ + + + I +T + + + I + +
Sbjct: 102 AAGSYAITEP-----ITRESVNIIDPRHNRTVLHWIASNSSAEKSED---LIVHEAKECI 153
Query: 187 EKKKNLIKETDQYGWTPIQSTS------------------NIADKDRKMTALHLAAGKGD 228
+ + D TP+ I +K + +ALH AA D
Sbjct: 154 AAGAD-VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSER-SALHQAAANRD 211
Query: 229 ARTVERIISENPKCYEL--VDNRGWNFLHYAMVSFHVGQLRN---LLEN----NSLARSL 279
+ +++ ++ +D G L + Q+ + L+E + +
Sbjct: 212 FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR 271
Query: 280 IDEGDAKGNTPLHVLAA 296
D KG T LH AA
Sbjct: 272 KDSEKYKGRTALH-YAA 287
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 5e-13
Identities = 41/285 (14%), Positives = 80/285 (28%), Gaps = 78/285 (27%)
Query: 53 KFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIE 111
F+ + + + + LH A G + I + +
Sbjct: 74 DFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIID----------- 121
Query: 112 AFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIF--------RDSDEKTNILF 163
T LH S+ + + + + D DE T ++
Sbjct: 122 ---------PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML 172
Query: 164 --KFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTP----------------IQ 205
R L L++ + ++ + +
Sbjct: 173 AVLARRRRLVAY-----------LMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLN 220
Query: 206 STSNIADKDRK----MTALHLAA---GKGDARTVERIIS-------ENPKCYELVDNRGW 251
ST D + MTAL + A G+ + + ++ + + +G
Sbjct: 221 STKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR 280
Query: 252 NFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAA 296
LHYA ++ ++ L+ S D+ D G TP+ LAA
Sbjct: 281 TALHYAAQVSNMPIVKYLVGEKG---SNKDKQDEDGKTPIM-LAA 321
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 4e-10
Identities = 23/203 (11%), Positives = 41/203 (20%), Gaps = 61/203 (30%)
Query: 121 NNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYA 180
+L EA G + + + + + + +
Sbjct: 34 ITSSQHSLLEASYDGYIKRQRNEL---------QHYSLYPNPQGYGN--------GNDFL 76
Query: 181 ALPKLLEKKKNLIKETDQYGWTP---------------IQSTSNIADKDRKMTALHLAAG 225
+ E + + + NI D T LH A
Sbjct: 77 G--DFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIAS 134
Query: 226 KGDARTVERIISENPKCY-------ELVDNRGWNFLHYAMVSFHVGQLRNLLENNSL--A 276
A E +I K +D L A+
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAV------------LARRRRLV 182
Query: 277 RSLIDEG------DAKGNTPLHV 293
L+ G + + LH
Sbjct: 183 AYLMKAGADPTIYNKSERSALHQ 205
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 23/78 (29%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
+ + G TP+ LAA+ G ++V LI++ A +EA V+
Sbjct: 306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS------------VEA-------VDATD 346
Query: 125 NTALHEAVSHGNVDLFKL 142
+TA A ++ + ++ +
Sbjct: 347 HTARQLAQANNHHNIVDI 364
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 2e-13
Identities = 32/260 (12%), Positives = 60/260 (23%), Gaps = 99/260 (38%)
Query: 64 ALLLQ---VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQM 116
L G + + A + +V L+ A
Sbjct: 16 KSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK------------------ 57
Query: 117 IRMVNNEKN--TALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQ 174
N LH+A + + + K+
Sbjct: 58 -----NLLENEFPLHQAATLEDTKIVKI-------------------------------- 80
Query: 175 TNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTS------------------NIADKDRK 216
LL + + D G T + K
Sbjct: 81 ----------LLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGW 129
Query: 217 MTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLA 276
T+ + A D V +SE P ++ + +H + + HV + LL+
Sbjct: 130 KTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYM--- 184
Query: 277 RSLIDEGDAKGNTPLHVLAA 296
+ + ++ P LA
Sbjct: 185 -TSTNTNNSLLFIPDIKLAI 203
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 2e-12
Identities = 29/236 (12%), Positives = 64/236 (27%), Gaps = 76/236 (32%)
Query: 69 VNAK-GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNT 126
N + PLH AA IV++L+ +++ NT
Sbjct: 57 KNLLENEFPLHQAATLEDTKIVKILLFSGLD------------DSQ-------FDDKGNT 97
Query: 127 ALHEAVSHGNVDLFKLKKTNNLILIFRDSD--EKTNILFKFRHLDLFRIQTNSIYAALPK 184
AL+ AV GN+ KL + ++ +T+ +A +
Sbjct: 98 ALYYAVDSGNMQTVKL-------FVKKNWRLMFYGK----------TGWKTSFYHAVMLN 140
Query: 185 LLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE----NP 240
+ + E S ++ +H+ G + ++ N
Sbjct: 141 DVSIVSYFLSEIP----------STFDLAI-LLSCIHITIKNGHVDMMILLLDYMTSTNT 189
Query: 241 KCYELVDNRGW-NFLHYAMVSFHVGQLRNLLENNSL--ARSLIDEGDAKGNTPLHV 293
++ + + A+ +N + ++L +
Sbjct: 190 N-----NSLLFIPDIKLAI------------DNKDIEMLQALFKYD-INIYSANLE 227
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 3e-09
Identities = 21/236 (8%), Positives = 57/236 (24%), Gaps = 76/236 (32%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKN 125
+ G+T L+ A G+ V++ ++ +
Sbjct: 88 DSQFDDKGNTALYYAVDSGNMQTVKLFVK-----KNWRLMFYG------------KTGWK 130
Query: 126 TALHEAVSHGNVDLFKL---KKTNNLILIFRDSDEKTNILF--KFRHLDLFRIQTNSIYA 180
T+ + AV +V + + + + + I K H+D+ +
Sbjct: 131 TSFYHAVMLNDVSIVSYFLSEIPSTF----DLAILLSCIHITIKNGHVDMMIL------- 179
Query: 181 ALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE-- 238
LL+ + + + P + LA D ++ +
Sbjct: 180 ----LLDYMTS-TNTNNSLLFIP---------------DIKLAIDNKDIEMLQALFKYDI 219
Query: 239 --NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLH 292
++ + ++E + + +
Sbjct: 220 NIYSA------------NLENVLLDDAEIAKMIIEKH--VE--YKSDSYTKDLDIV 259
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165 | Back alignment and structure |
|---|
Score = 64.7 bits (159), Expect = 6e-13
Identities = 37/237 (15%), Positives = 59/237 (24%), Gaps = 105/237 (44%)
Query: 69 VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTAL 128
N++ D L AAK G + V+ L + R + ++T L
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCT-----VQSVN------------CRDIEGRQSTPL 46
Query: 129 HEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEK 188
H A + V + + LL+
Sbjct: 47 HFAAGYNRVSVVEY------------------------------------------LLQH 64
Query: 189 KKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE----NPKCYE 244
+ + D+ G P LH A G E ++ N
Sbjct: 65 GAD-VHAKDKGGLVP----------------LHNACSYGHYEVAELLVKHGAVVNVA--- 104
Query: 245 LVDNRGWNFLHYAMVSFHVGQLRNLLENNSL--ARSLIDEG------DAKGNTPLHV 293
D + LH A + L+ G + GNTPL +
Sbjct: 105 --DLWKFTPLHEAA------------AKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165 | Back alignment and structure |
|---|
Score = 52.4 bits (127), Expect = 1e-08
Identities = 29/197 (14%), Positives = 49/197 (24%), Gaps = 91/197 (46%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
TPLH AA + +V L++ A + A +
Sbjct: 35 CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD------------VHA-------KDKGG 75
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
LH A S+G+ ++ +L L+ +
Sbjct: 76 LVPLHNACSYGHYEVAEL-------LVKHGAV---------------------------- 100
Query: 185 LLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE----NP 240
+ D + +TP LH AA KG + ++
Sbjct: 101 --------VNVADLWKFTP----------------LHEAAAKGKYEICKLLLQHGADPTK 136
Query: 241 KCYELVDNRGWNFLHYA 257
K + G L
Sbjct: 137 K-----NRDGNTPLDLV 148
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 3e-06
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 24/78 (30%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
VN TPLH AA G ++I ++L++ A N +
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD------------PTK-------KNRDG 141
Query: 125 NTALHEAVSHGNVDLFKL 142
NT L G+ D+ L
Sbjct: 142 NTPLDLV-KDGDTDIQDL 158
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165 | Back alignment and structure |
|---|
Score = 43.9 bits (105), Expect = 1e-05
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 211 ADKDRK-MTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNL 269
A + + L AA GD TV+++ + ++ R LH+A V + L
Sbjct: 2 AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61
Query: 270 LEN--NSLARSLIDEGDAKGNTPLHVLAA 296
L++ + + D G PLH A
Sbjct: 62 LQHGAD------VHAKDKGGLVPLH-NAC 83
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165 | Back alignment and structure |
|---|
Score = 43.1 bits (103), Expect = 2e-05
Identities = 27/101 (26%), Positives = 33/101 (32%), Gaps = 31/101 (30%)
Query: 209 NIADKD-RKMTALHLAAGKGDARTVERIISE----NPKCYELVDNRGWNFLHYAMVSFHV 263
N D + R+ T LH AAG VE ++ + K D G LH A
Sbjct: 34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-----DKGGLVPLHNAC----- 83
Query: 264 GQLRNLLENNSL--ARSLIDEG------DAKGNTPLHVLAA 296
A L+ G D TPLH AA
Sbjct: 84 -------SYGHYEVAELLVKHGAVVNVADLWKFTPLH-EAA 116
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201 | Back alignment and structure |
|---|
Score = 65.5 bits (161), Expect = 6e-13
Identities = 32/237 (13%), Positives = 65/237 (27%), Gaps = 96/237 (40%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
V+ G+TPL++A +I + LI+R A I N+
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD------------INL-------QNSIS 72
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
++ A + G ++
Sbjct: 73 DSPYLYAGAQGRTEILAY------------------------------------------ 90
Query: 185 LLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYE 244
+L+ + + ++YG L AA KG V+ ++ + + +
Sbjct: 91 MLKHATPDLNKHNRYGGNA----------------LIPAAEKGHIDNVKLLLEDGREDID 134
Query: 245 LVDNRGWNFLHYAMVSFHVGQLRNLLENNSL--ARSLIDEG------DAKGNTPLHV 293
++ G+ L A+ + L++ G D G T +
Sbjct: 135 FQNDFGYTALIEAVGL-------REGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 6e-10
Identities = 29/197 (14%), Positives = 50/197 (25%), Gaps = 86/197 (43%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKN 125
+N + D+P A G +I+ +++ +L N
Sbjct: 65 INLQNSISDSPYLYAGAQGRTEILAYMLK------HATPDLNKH-----------NRYGG 107
Query: 126 TALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKL 185
AL A G++D KL L
Sbjct: 108 NALIPAAEKGHIDNVKL------------------------------------------L 125
Query: 186 LEKKKNLIKETDQYGWTPIQSTS-----------------------NIADKDRKMTALHL 222
LE + I + +G+T + +I D + TA+
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGR-TAMDY 184
Query: 223 AAGKGDARTVERIISEN 239
A KG + + N
Sbjct: 185 ANQKGYTEISKILAQYN 201
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201 | Back alignment and structure |
|---|
Score = 42.4 bits (101), Expect = 5e-05
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 35 NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAK---GDTPLHLAAKFGHFDIVRV 91
T L + E + V+ ++E + K G T + A + G+ +I ++
Sbjct: 141 YTALIEAVGLREGNQLYQDIVKLLMENGA----DQSIKDNSGRTAMDYANQKGYTEISKI 196
Query: 92 LIE 94
L +
Sbjct: 197 LAQ 199
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172 | Back alignment and structure |
|---|
Score = 64.7 bits (159), Expect = 7e-13
Identities = 38/239 (15%), Positives = 71/239 (29%), Gaps = 88/239 (36%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAF 113
++E L K L+ + + +G TPL A+ FG + VR L+E A
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD------------PHI- 64
Query: 114 RQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRI 173
+ E+ +AL A + G D+ L
Sbjct: 65 ------LAKERESALSLASTGGYTDIVGL------------------------------- 87
Query: 174 QTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVE 233
LLE+ + I D G TP L A + VE
Sbjct: 88 -----------LLERDVD-INIYDWNGGTP----------------LLYAVRGNHVKCVE 119
Query: 234 RIISE--NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTP 290
+++ + + G+ + A+ + + + + + + + + P
Sbjct: 120 ALLARGADL---TTEADSGYTPMDLAVALGYRKVQQVIENHI--LK--LFQSNLVPADP 171
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 2e-06
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 217 MTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLA 276
++H A +G+ ++ + + D RG+ L +A + +R LLE
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG--- 59
Query: 277 RSLIDEGDAKGNTPLHVLAA 296
+ + + L LA+
Sbjct: 60 -ADPHILAKERESALS-LAS 77
|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 47/244 (19%), Positives = 73/244 (29%), Gaps = 84/244 (34%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
V+ + G+T LH+AA + + + VL+E +L E
Sbjct: 30 VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTS--------------ELYEG 75
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSD--EKTNILFKFRHLDLFRIQTNSIYAAL 182
TALH AV + NV+L + L+ R + +
Sbjct: 76 QTALHIAVINQNVNLVRA-------LLARGASVSARATGSVFHYR--------------- 113
Query: 183 PKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE---- 238
YG P L AA G V +I
Sbjct: 114 ----------PHNLIYYGEHP----------------LSFAACVGSEEIVRLLIEHGADI 147
Query: 239 NPKCYELVDNRGWNFLHYAMVSFH---VGQLRNLL---ENNSLARSLIDEGDAKGNTPLH 292
+ D+ G LH ++ + Q+ NLL + +SL + +G TP
Sbjct: 148 RAQ-----DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFK 202
Query: 293 VLAA 296
LA
Sbjct: 203 -LAG 205
|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-08
Identities = 32/192 (16%), Positives = 58/192 (30%), Gaps = 64/192 (33%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-----AKLAQRGDEELENRIEAFRQMIRMV 120
+ ++ G T LH+A + ++VR L+ R A+ F +
Sbjct: 68 MTSELYEGQTALHIAVINQNVNLVRALLARGASVSAR----------ATGSVFHYRPHNL 117
Query: 121 NNEKNTALHEAVSHGNVDLFKLKKTNNLILI-------FRDSDEKT--NILFKFRHLDLF 171
L A G+ ++ +L LI +DS T +IL +
Sbjct: 118 IYYGEHPLSFAACVGSEEIVRL-------LIEHGADIRAQDSLGNTVLHILILQPNKT-- 168
Query: 172 RIQTNSIYAALPKLL------EKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAG 225
+ LL + K+L + G TP LA
Sbjct: 169 ------FACQMYNLLLSYDGGDHLKSLELVPNNQGLTP----------------FKLAGV 206
Query: 226 KGDARTVERIIS 237
+G+ + ++
Sbjct: 207 EGNIVMFQHLMQ 218
|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 7e-04
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 32 KAKNTILHINIISSERENVSTKFVEEIL--------EKCPALLLQVNAKGDTPLHLAAKF 83
NT+LHI I+ + + +L K +L L N +G TP LA
Sbjct: 152 SLGNTVLHILILQPNKTFA--CQMYNLLLSYDGGDHLK--SLELVPNNQGLTPFKLAGVE 207
Query: 84 GHFDIVRVLIER 95
G+ + + L+++
Sbjct: 208 GNIVMFQHLMQK 219
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 3e-12
Identities = 45/256 (17%), Positives = 78/256 (30%), Gaps = 43/256 (16%)
Query: 6 FKAASAGNSEPFKDMARDVIESLLTAKAK------------NTILHI-NIISSERENVST 52
F S G+ + + ++ LLT K + T L + S N +
Sbjct: 10 FDIVSRGSPDGLEG----LLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65
Query: 53 KFVEEILEKCPALLLQVNA-------KGDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDE 104
+ +I EK + +N+ +G T LH+A + V +L+E+ A + +
Sbjct: 66 PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ--- 122
Query: 105 ELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKL---KKTNNLILIFRDSDEKTNI 161
+ L A + L +DS T +
Sbjct: 123 --ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180
Query: 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALH 221
D R T + LL K L +T + + + D + L
Sbjct: 181 HALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT---------NLEALLNNDGL-SPLM 230
Query: 222 LAAGKGDARTVERIIS 237
+AA G + II
Sbjct: 231 MAAKTGKIGIFQHIIR 246
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 8e-10
Identities = 45/246 (18%), Positives = 64/246 (26%), Gaps = 74/246 (30%)
Query: 70 NAKGDTPLHLAA---KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNT 126
+ G T L A G D + +L++ A E+ N E R V T
Sbjct: 43 PSTGKTCLPKALLNLSAGRNDTIPILLDIA-------EKTGNMREFINSPFRDVYYRGQT 95
Query: 127 ALHEAVSHGNVDLFKLKKTNNLILIFR--DSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
ALH A+ +L L+ + D + F
Sbjct: 96 ALHIAIERRCKHYVEL-------LVEKGADVHAQARGRFFQPKD---------------- 132
Query: 185 LLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYE 244
+G P L LAA V + K +
Sbjct: 133 --------EGGYFYFGELP----------------LSLAACTNQPHIVHYLTENGHKQAD 168
Query: 245 L--VDNRGWNFLHYA---------MVSFHVGQLRNLLE---NNSLARSLIDEGDAKGNTP 290
L D+RG LH F LL +L + G +P
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP 228
Query: 291 LHVLAA 296
L +AA
Sbjct: 229 LM-MAA 233
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 5e-07
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 35 NTILHINIISSERENVSTKF----VEEILEKC------PALLLQVNAKGDTPLHLAAKFG 84
NT+LH + ++ +TKF + +L KC L +N G +PL +AAK G
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236
Query: 85 HFDIVRVLIER 95
I + +I R
Sbjct: 237 KIGIFQHIIRR 247
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 3e-12
Identities = 36/280 (12%), Positives = 80/280 (28%), Gaps = 69/280 (24%)
Query: 22 RDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGD----TPL 77
+++ SL + + ++ ++E+ + P L +N D TPL
Sbjct: 76 QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL 135
Query: 78 HLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGN 136
H + ++V+ L++ + +N + L +AV N
Sbjct: 136 HWLTSIANLELVKHLVKHGSN-------------------RLYGDNMGESCLVKAVKSVN 176
Query: 137 VDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKET 196
N LL+ +
Sbjct: 177 ---------------------------------------NYDSGTFEALLDYLYPCLILE 197
Query: 197 DQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHY 256
D T + + MT AA + I+ + + + N + +
Sbjct: 198 DSMNRTIL----HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 253
Query: 257 AMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAA 296
+ L+ + ++++ D+ G+T L+ +AA
Sbjct: 254 KNGERKDS-ILENLDLKWIIANMLNAQDSNGDTCLN-IAA 291
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 2e-08
Identities = 27/196 (13%), Positives = 49/196 (25%), Gaps = 21/196 (10%)
Query: 121 NNEKNTALHEAVSHGNVDLFKLKKTNNLILIFR------DSDEKTNILFKFRHLDLFRIQ 174
+ N + DL ++ L ++ + +E+ L F LF
Sbjct: 16 GTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEI 75
Query: 175 TNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTS--------------NIADKDRKMTAL 220
+ + Q S NI + T L
Sbjct: 76 QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL 135
Query: 221 HLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLI 280
H + V+ ++ DN G + L A+ S + +
Sbjct: 136 HWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL 194
Query: 281 DEGDAKGNTPLHVLAA 296
D+ T LH +
Sbjct: 195 ILEDSMNRTILHHIII 210
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 1e-06
Identities = 22/181 (12%), Positives = 48/181 (26%), Gaps = 39/181 (21%)
Query: 69 VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTAL 128
+ G++ L A K + E L ++ + + ++ T L
Sbjct: 160 GDNMGESCLVKAVKSVNNYDSGTF-----------EAL---LDYLYPCLILEDSMNRTIL 205
Query: 129 HEAVSHGNVD------LFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAAL 182
H + + + L I+ ++ ++ K + +
Sbjct: 206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILEN 265
Query: 183 PKLLEKKKNLIKETDQYGWTPIQSTS------------------NIADKDRKMTALHLAA 224
L N++ D G T + + IA+K + A
Sbjct: 266 LDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL-RPVDFGA 324
Query: 225 G 225
G
Sbjct: 325 G 325
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-05
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 30/136 (22%)
Query: 8 AASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERE-------NVSTKFVEEILE 60
A+ ++ L+ K I ++E+E + E L+
Sbjct: 208 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD 267
Query: 61 KCPALLLQVNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQM 116
+ +NA+ GDT L++AA+ G+ IV L++ A
Sbjct: 268 LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD------------------- 308
Query: 117 IRMVNNEKNTALHEAV 132
+ N +
Sbjct: 309 PFIANKSGLRPVDFGA 324
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 4e-12
Identities = 32/238 (13%), Positives = 56/238 (23%), Gaps = 87/238 (36%)
Query: 69 VNAK--GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKN 125
V L ++ G FD+V+ +I + N+E
Sbjct: 31 VKFNPLPLALLLDSSLEGEFDLVQRIIYEVDD-------------------PSLPNDEGI 71
Query: 126 TALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKL 185
TALH AV G+ ++ K L+ +
Sbjct: 72 TALHNAVCAGHTEIVKF-------LVQFGVN----------------------------- 95
Query: 186 LEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE--NPKCY 243
+ D GWTP LH AA + + + ++
Sbjct: 96 -------VNAADSDGWTP----------------LHCAASCNNVQVCKFLVESGAAVFAM 132
Query: 244 ELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKE 301
D + M + + L + + + L E
Sbjct: 133 TYSDMQTAADKCEEMEEGYTQCSQFLYGVQ--EK--MGIMNKGVIYALWDYEPQNDDE 186
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 3e-09
Identities = 31/240 (12%), Positives = 56/240 (23%), Gaps = 89/240 (37%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
+ G T LH A GH +IV+ L++ + A +++
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN------------VNA-------ADSDG 103
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
T LH A S NV + K
Sbjct: 104 WTPLHCAASCNNVQVCKF------------------------------------------ 121
Query: 185 LLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYE 244
L+E + T T +G + + + K
Sbjct: 122 LVESGAAVFAMTYSDMQTA--------------ADKCEEMEEGYTQCSQFLYGVQEKM-G 166
Query: 245 LVDNRGWNFLHYA------MVSFHVGQLRNLLENNSLARS---LIDEGDAKGNTPLHVLA 295
+++ L + G ++ D +G P ++L
Sbjct: 167 IMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 226
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 6e-06
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 30/120 (25%)
Query: 197 DQYGWTP----------------IQSTSNIADKDRKMTALHLAAGKGDARTVERIISE-- 238
+ G I + + L ++ +G+ V+RII E
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61
Query: 239 NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN--NSLARSLIDEGDAKGNTPLHVLAA 296
+P L ++ G LH A+ + H ++ L++ N ++ D+ G TPLH AA
Sbjct: 62 DP---SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN------VNAADSDGWTPLH-CAA 111
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 4e-12
Identities = 36/256 (14%), Positives = 64/256 (25%), Gaps = 96/256 (37%)
Query: 32 KAKN----TILHINIISSERENVSTKFVEEILEKCPALLLQ----VNAK---GDTPLHLA 80
+ + LH+ II + E++ + +N + TPLHLA
Sbjct: 2 QQLTEDGDSFLHLAII-----HEEKALTMEVIR----QVKGDLAFLNFQNNLQQTPLHLA 52
Query: 81 AKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDL 139
+I L+ + + NT LH A G +
Sbjct: 53 VITNQPEIAEALLGAGCD-------------------PELRDFRGNTPLHLACEQGCLAS 93
Query: 140 FKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQY 199
+ L + +++K T+
Sbjct: 94 VGV-------LTQSCTT------------------------------PHLHSILKATNYN 116
Query: 200 GWTPIQSTS------------------NIADKDRKMTALHLAAGKGDARTVERIISENPK 241
G T + S N + TALHLA + V ++
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Query: 242 CYELVDNRGWNFLHYA 257
V +G++
Sbjct: 177 VNR-VTYQGYSPYQLT 191
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 2e-11
Identities = 41/243 (16%), Positives = 63/243 (25%), Gaps = 100/243 (41%)
Query: 68 QVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTA 127
Q+ GD+ LHLA + +I + + + NN + T
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQ--VKGDLAF------------LNFQNNLQQTP 48
Query: 128 LHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLE 187
LH AV ++ + LL
Sbjct: 49 LHLAVITNQPEIAEA------------------------------------------LLG 66
Query: 188 KKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS-----ENPKC 242
+ + D G TP LHLA +G +V +
Sbjct: 67 AGCD-PELRDFRGNTP----------------LHLACEQGCLASVGVLTQSCTTPHLHSI 109
Query: 243 YELVDNRGWNFLHYAMVSFHVGQLRNLLENNSL--ARSLIDEG---DAK----GNTPLHV 293
+ + G LH A + L L+ G +A+ G T LH
Sbjct: 110 LKATNYNGHTCLHLAS------------IHGYLGIVELLVSLGADVNAQEPCNGRTALH- 156
Query: 294 LAA 296
LA
Sbjct: 157 LAV 159
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 4e-09
Identities = 43/234 (18%), Positives = 65/234 (27%), Gaps = 106/234 (45%)
Query: 23 DVIESLLTAKAK--------NTILHINIISSERENVSTKFVEEILEKC--PALLLQVNAK 72
++ E+LL A NT LH+ E V + + C P L + A
Sbjct: 59 EIAEALLGAGCDPELRDFRGNTPLHLAC-----EQGCLASVGVLTQSCTTPHLHSILKAT 113
Query: 73 ---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKN--- 125
G T LHLA+ G+ IV +L+ A + N +
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLVSLGADV-----------------------NAQEPCN 150
Query: 126 --TALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALP 183
TALH AV N DL L
Sbjct: 151 GRTALHLAVDLQNPDLVSL----------------------------------------- 169
Query: 184 KLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS 237
LL+ + + G++P L G+ R +++
Sbjct: 170 -LLKCGAD-VNRVTYQGYSP----------------YQLTWGRPSTRIQQQLGQ 205
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 13/82 (15%), Positives = 19/82 (23%), Gaps = 25/82 (30%)
Query: 65 LLLQ----VNAK---GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMI 117
LLL+ VN G +P L I + L + E L+
Sbjct: 169 LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ------LTLENLQM--------- 213
Query: 118 RMVNNEKNTALHEAVSHGNVDL 139
E +
Sbjct: 214 ---LPESEDEESYDTESEFTEF 232
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 9e-12
Identities = 31/226 (13%), Positives = 63/226 (27%), Gaps = 85/226 (37%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALH 129
D PLH AAK G+ +R ++ R + ++ +TAL+
Sbjct: 70 AESIDNPLHEAAKRGNLSWLRECLD-----NRVG-------------VNGLDKAGSTALY 111
Query: 130 EAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKK 189
A G+ D+ ++ L +
Sbjct: 112 WACHGGHKDIVEM------------------------------------------LFTQP 129
Query: 190 KNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE--NPKCYELVD 247
+ + ++ G T LH AA KG A V+ ++++ +L +
Sbjct: 130 NIELNQQNKLGDTA----------------LHAAAWKGYADIVQLLLAKGART---DLRN 170
Query: 248 NRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
A + L+ +++ +A+
Sbjct: 171 IEKKLAFDMATNAACASLLKKKQGTDAV----RTLSNAEDYLDDED 212
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-10
Identities = 29/192 (15%), Positives = 44/192 (22%), Gaps = 80/192 (41%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKN 125
VN G T L+ A GH DIV +L Q E + N +
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEMLF-----TQPNIE-----LNQ-------QNKLGD 141
Query: 126 TALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKL 185
TALH A G D+ +L L
Sbjct: 142 TALHAAAWKGYADIVQL------------------------------------------L 159
Query: 186 LEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYEL 245
L K + +A A +++ + L
Sbjct: 160 LAKGAR-TDLRNIEKKLA----------------FDMATNAACASLLKKKQGTDAVR-TL 201
Query: 246 VDNRGWNFLHYA 257
+ + +
Sbjct: 202 SNAEDYLDDEDS 213
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 7/81 (8%), Positives = 19/81 (23%), Gaps = 25/81 (30%)
Query: 65 LLLQ----VNAK---GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMI 117
LLL + + +A +++ +A +
Sbjct: 158 LLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT---------------DA---VR 199
Query: 118 RMVNNEKNTALHEAVSHGNVD 138
+ N E ++ +
Sbjct: 200 TLSNAEDYLDDEDSDLEHHHH 220
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167 | Back alignment and structure |
|---|
Score = 60.9 bits (149), Expect = 1e-11
Identities = 32/226 (14%), Positives = 55/226 (24%), Gaps = 92/226 (40%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEA 131
+H A G + IE+ I + E T L A
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENV------------INH-------TDEEGFTPLMWA 43
Query: 132 VSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKN 191
+HG + + + LL+ +
Sbjct: 44 AAHGQIAVVEF------------------------------------------LLQNGAD 61
Query: 192 LIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE----NPKCYELVD 247
+ + + L LA KG V+ ++ N D
Sbjct: 62 -PQLLGKGRESA----------------LSLACSKGYTDIVKMLLDCGVDVNEY-----D 99
Query: 248 NRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
G L YA+ HV ++ LLE+ + G + +
Sbjct: 100 WNGGTPLLYAVHGNHVKCVKMLLESGAD----PTIETDSGYNSMDL 141
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167 | Back alignment and structure |
|---|
Score = 59.3 bits (145), Expect = 5e-11
Identities = 32/195 (16%), Positives = 54/195 (27%), Gaps = 87/195 (44%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
+N G TPL AA G +V L++ A + + +
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD------------PQL-------LGKGR 69
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
+AL A S G D+ K+
Sbjct: 70 ESALSLACSKGYTDIVKM------------------------------------------ 87
Query: 185 LLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE--NPKC 242
LL+ + + E D G TP L A + V+ ++ +P
Sbjct: 88 LLDCGVD-VNEYDWNGGTP----------------LLYAVHGNHVKCVKMLLESGADP-- 128
Query: 243 YELVDNRGWNFLHYA 257
+ + G+N + A
Sbjct: 129 -TIETDSGYNSMDLA 142
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167 | Back alignment and structure |
|---|
Score = 52.8 bits (128), Expect = 9e-09
Identities = 26/181 (14%), Positives = 41/181 (22%), Gaps = 86/181 (47%)
Query: 65 LLLQ----VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQM 116
LLQ ++ L LA G+ DIV++L++ +
Sbjct: 54 FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD------------VNE---- 97
Query: 117 IRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTN 176
+ T L AV +V K+
Sbjct: 98 ---YDWNGGTPLLYAVHGNHVKCVKM---------------------------------- 120
Query: 177 SIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERII 236
LLE + G+ + LA G + I
Sbjct: 121 --------LLESGAD-PTIETDSGYNS----------------MDLAVALGYRSVQQVIE 155
Query: 237 S 237
S
Sbjct: 156 S 156
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 3e-05
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 217 MTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLA 276
++H A +G+ + I + D G+ L +A + + LL+N
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNG--- 59
Query: 277 RSLIDEGDAKGNTPLHVLAA 296
+ + L LA
Sbjct: 60 -ADPQLLGKGRESALS-LAC 77
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167 | Back alignment and structure |
|---|
Score = 42.0 bits (100), Expect = 5e-05
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER 95
+ G + LA G+ + +V+
Sbjct: 128 PTIETDSGYNSMDLAVALGYRSVQQVIESH 157
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167 | Back alignment and structure |
|---|
Score = 42.0 bits (100), Expect = 5e-05
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 209 NIADKDRKMTALHLAAGKGDARTVERIISE--NPKCYELVDNRGWNFLHYAMVSFHVGQL 266
N D++ T L AA G VE ++ +P +L+ + L A + +
Sbjct: 30 NHTDEEGF-TPLMWAAAHGQIAVVEFLLQNGADP---QLLGKGRESALSLACSKGYTDIV 85
Query: 267 RNLLENNSLARSLIDEGDAKGNTPLHVLAA 296
+ LL+ ++E D G TPL A
Sbjct: 86 KMLLDCG--VD--VNEYDWNGGTPLL-YAV 110
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179 | Back alignment and structure |
|---|
Score = 60.5 bits (148), Expect = 2e-11
Identities = 32/228 (14%), Positives = 60/228 (26%), Gaps = 90/228 (39%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAV 132
+ + G+ VR+ ++ EN + ++ + LH A
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNT----------ENDLNQ-------GDDHGFSPLHWAC 47
Query: 133 SHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192
G + ++ L+ +
Sbjct: 48 REGRSAVVEM------------------------------------------LIMRGAR- 64
Query: 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE----NPKCYELVDN 248
I ++ TP LHLAA G V++++ N +
Sbjct: 65 INVMNRGDDTP----------------LHLAASHGHRDIVQKLLQYKADINAV-----NE 103
Query: 249 RGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAA 296
G LHYA +L+ N +L + + G P+ A
Sbjct: 104 HGNVPLHYACFWGQDQVAEDLVANGAL----VSICNKYGEMPVD-KAK 146
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179 | Back alignment and structure |
|---|
Score = 57.4 bits (140), Expect = 3e-10
Identities = 38/232 (16%), Positives = 60/232 (25%), Gaps = 101/232 (43%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
+N G +PLH A + G +V +LI R A RI +N
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGA------------RINV-------MNRGD 72
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
+T LH A SHG+ D+ +
Sbjct: 73 DTPLHLAASHGHRDIVQK------------------------------------------ 90
Query: 185 LLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE--NPKC 242
LL+ K + I +++G P LH A G + E +++
Sbjct: 91 LLQYKAD-INAVNEHGNVP----------------LHYACFWGQDQVAEDLVANGALV-- 131
Query: 243 YELVDNRGWNFLHYAMVSFHVGQLRNLLENNSL--ARSLIDEGDAKGNTPLH 292
+ + G + A G P
Sbjct: 132 -SICNKYGEMPVDKAK------------APLRELLRERAEKMGQNLNRIPYK 170
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 2e-07
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 27/86 (31%)
Query: 65 LLLQ----VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQM 116
LLQ +NA G+ PLH A +G + L+ A
Sbjct: 90 KLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL------------------- 130
Query: 117 IRMVNNEKNTALHEAVSHGNVDLFKL 142
+ + N + +A + L +
Sbjct: 131 VSICNKYGEMPVDKAKAPLRELLRER 156
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179 | Back alignment and structure |
|---|
Score = 45.1 bits (108), Expect = 5e-06
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 211 ADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLL 270
+ M + +G+A V + D+ G++ LH+A + L+
Sbjct: 1 GSPEF-MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI 59
Query: 271 ENNSLARSLIDEGDAKGNTPLHVLAA 296
AR I+ + +TPLH LAA
Sbjct: 60 MRG--AR--INVMNRGDDTPLH-LAA 80
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123 | Back alignment and structure |
|---|
Score = 58.9 bits (144), Expect = 3e-11
Identities = 23/192 (11%), Positives = 43/192 (22%), Gaps = 84/192 (43%)
Query: 69 VNAKGDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTA 127
+ + D A K G D V+ + + +
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGED------------VNR-------TLEGGRKP 43
Query: 128 LHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLE 187
LH A G +++ + LL
Sbjct: 44 LHYAADCGQLEILEF------------------------------------------LLL 61
Query: 188 KKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE--NPKCYEL 245
K + I D++ TP L A +G V+ ++S+ + +
Sbjct: 62 KGAD-INAPDKHHITP----------------LLSAVYEGHVSCVKLLLSKGADK---TV 101
Query: 246 VDNRGWNFLHYA 257
G
Sbjct: 102 KGPDGLTAFEAT 113
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123 | Back alignment and structure |
|---|
Score = 48.9 bits (118), Expect = 1e-07
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 23/77 (29%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
+NA TPL A GH V++L+ + A +
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD------------KTV-------KGPDG 106
Query: 125 NTALHEAVSHGNVDLFK 141
TA + L +
Sbjct: 107 LTAFEATDNQAIKALLQ 123
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 1e-04
Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 14/83 (16%)
Query: 218 TALHLAAGKGDARTVERIISE----NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273
A GD V+ +++ N G LHYA + L LL
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRT-----LEGGRKPLHYAADCGQLEILEFLLLKG 63
Query: 274 SLARSLIDEGDAKGNTPLHVLAA 296
+ I+ D TPL A
Sbjct: 64 ----ADINAPDKHHITPLL-SAV 81
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123 | Back alignment and structure |
|---|
Score = 38.1 bits (90), Expect = 5e-04
Identities = 24/180 (13%), Positives = 44/180 (24%), Gaps = 76/180 (42%)
Query: 120 VNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIY 179
+ + + A+ +G++D K
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKD------------------------------------- 25
Query: 180 AALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE- 238
+ K ++ + T + G P LH AA G +E ++ +
Sbjct: 26 -----YVAKGED-VNRTLEGGRKP----------------LHYAADCGQLEILEFLLLKG 63
Query: 239 ---NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN--NSLARSLIDEGDAKGNTPLHV 293
N D L A+ HV ++ LL + G T
Sbjct: 64 ADINAP-----DKHHITPLLSAVYEGHVSCVKLLLSKGAD------KTVKGPDGLTAFEA 112
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 4e-11
Identities = 37/248 (14%), Positives = 60/248 (24%), Gaps = 100/248 (40%)
Query: 69 VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTAL 128
V ++ +TP AA+ + L+E ++A V+ TAL
Sbjct: 41 VVSEYETPWWTAARKADEQALSQLLEDRD------------VDA-------VDENGRTAL 81
Query: 129 HEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEK 188
G+ +L L E
Sbjct: 82 LFVAGLGSDKCVRL------------------------------------------LAEA 99
Query: 189 KKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE--NPKCYELV 246
+L + G T LH+AAG VE ++ + E+
Sbjct: 100 GADLDHRDMRGGLTA----------------LHMAAGYVRPEVVEALVELGADI---EVE 140
Query: 247 DNRGWNFLHYAMVSFHVGQLRNLLEN------------------NSLARSLIDEGDAKGN 288
D RG L A N ++ I E KG
Sbjct: 141 DERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGK 200
Query: 289 TPLHVLAA 296
+++
Sbjct: 201 DVEYLVRW 208
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 5e-10
Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 46/172 (26%)
Query: 69 VNAK----GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNE 123
++ + G T LH+AA + ++V L+E A IE +
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD------------IEV-------EDER 143
Query: 124 KNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALP 183
TAL A + R + I + YA +
Sbjct: 144 GLTALELAREILKTTPKGN-----PMQFGRRIGLEKVINVLEGQVFE--------YAEVD 190
Query: 184 KLLEKKKN------LIKETDQY--GWTPIQSTSNIADKDRKMTALHLAAGKG 227
+++EK+ L++ D W + KD + L A +
Sbjct: 191 EIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE-DGLEYAVAES 241
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 6e-04
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 211 ADKDRK-MTALHLAAGKGDARTVERIISE-NPKCYELVDNRGWNFLHYAMVSFHVGQLRN 268
AD + T AA K D + + +++ + + + VD G L + +R
Sbjct: 39 ADVVSEYETPWWTAARKADEQALSQLLEDRDV---DAVDENGRTALLFVAGLGSDKCVRL 95
Query: 269 LLEN--NSLARSLIDEGDAK-GNTPLHVLAA 296
L E + +D D + G T LH +AA
Sbjct: 96 LAEAGAD------LDHRDMRGGLTALH-MAA 119
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 5e-11
Identities = 33/204 (16%), Positives = 52/204 (25%), Gaps = 78/204 (38%)
Query: 69 VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTAL 128
V ++ +TP AA+ + L+E ++A V+ TAL
Sbjct: 40 VVSEYETPWWTAARKADEQALSQLLEDRD------------VDA-------VDENGRTAL 80
Query: 129 HEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEK 188
G+ +L L E
Sbjct: 81 LFVAGLGSDKCVRL------------------------------------------LAEA 98
Query: 189 KKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDN 248
+L + G T LH+AAG VE ++ E+ D
Sbjct: 99 GADLDHRDMRGGLTA----------------LHMAAGYVRPEVVEALVELGADI-EVEDE 141
Query: 249 RGWNFLHYAMVSFHVGQLRNLLEN 272
RG L A N ++
Sbjct: 142 RGLTALELAREILKTTPKGNPMQF 165
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 4e-07
Identities = 31/194 (15%), Positives = 47/194 (24%), Gaps = 98/194 (50%)
Query: 56 EEILEKCPALLLQ---VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELEN 108
E+ L LL+ V+A G T L A G VR+L E A L
Sbjct: 57 EQALS----QLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL---------- 102
Query: 109 RIEAFRQMIRMVNNEKN-----TALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILF 163
+ ++ TALH A + ++ +
Sbjct: 103 -------------DHRDMRGGLTALHMAAGYVRPEVVEA--------------------- 128
Query: 164 KFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLA 223
L+E + I+ D+ G T L LA
Sbjct: 129 ---------------------LVELGAD-IEVEDERGLTA----------------LELA 150
Query: 224 AGKGDARTVERIIS 237
+
Sbjct: 151 REILKTTPKGNPMQ 164
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 5e-06
Identities = 26/136 (19%), Positives = 40/136 (29%), Gaps = 44/136 (32%)
Query: 187 EKKKNLIKETDQYGWTPI-------------QSTSNIADKDRK-MTALHLAAGKGDARTV 232
E K + T G S+ AD + T AA K D + +
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQAL 60
Query: 233 ERIISE---NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSL--ARSLIDEG---D 284
+++ + + D G L + S R L + G D
Sbjct: 61 SQLLEDRDVDAV-----DENGRTALLFVA------------GLGSDKCVRLLAEAGADLD 103
Query: 285 AK----GNTPLHVLAA 296
+ G T LH +AA
Sbjct: 104 HRDMRGGLTALH-MAA 118
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 6e-05
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 209 NIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRN 268
+ D++ + TAL AG G + V + G LH A +
Sbjct: 70 DAVDENGR-TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 269 LLENNSLARSLIDEGDAKGNTPLHVLAA 296
L+E A I+ D +G T L LA
Sbjct: 129 LVELG--AD--IEVEDERGLTALE-LAR 151
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183 | Back alignment and structure |
|---|
Score = 38.6 bits (91), Expect = 8e-04
Identities = 5/31 (16%), Positives = 10/31 (32%), Gaps = 3/31 (9%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIERA 96
+ + G T L LA + ++
Sbjct: 136 IEVEDERGLTALELAREILKTTPKGNPMQFG 166
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169 | Back alignment and structure |
|---|
Score = 58.9 bits (144), Expect = 6e-11
Identities = 35/211 (16%), Positives = 59/211 (27%), Gaps = 91/211 (43%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTAL 128
+ L AA+ G D VR+L+ A + A + T L
Sbjct: 11 GSDLGKKLLEAARAGRDDEVRILMANGAD------------VNA-------EDASGWTPL 51
Query: 129 HEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEK 188
H A +G++++ ++ LL+
Sbjct: 52 HLAAFNGHLEIVEV------------------------------------------LLKN 69
Query: 189 KKNLIKETDQYGWTPIQSTS------------------NIADKDRKMTALHLAAGKGDAR 230
+ + D G TP++ + N D + T LHLAA G
Sbjct: 70 GAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH-TPLHLAAMFGHLE 127
Query: 231 TVERIISE----NPKCYELVDNRGWNFLHYA 257
VE ++ N + D G +
Sbjct: 128 IVEVLLKNGADVNAQ-----DKFGKTAFDIS 153
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169 | Back alignment and structure |
|---|
Score = 55.4 bits (135), Expect = 1e-09
Identities = 39/193 (20%), Positives = 61/193 (31%), Gaps = 85/193 (44%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
VNA+ G TPLHLAA GH +IV VL++ A + A V++
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD------------VNA-------VDHAG 80
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
T L A G++++ ++
Sbjct: 81 MTPLRLAALFGHLEIVEV------------------------------------------ 98
Query: 185 LLEKKKNLIKETDQYGWTPIQSTS------------------NIADKDRKMTALHLAAGK 226
LL+ + + D G TP+ + N DK K TA ++
Sbjct: 99 LLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGK-TAFDISIDN 156
Query: 227 GDARTVERIISEN 239
G+ E + N
Sbjct: 157 GNEDLAEILQKLN 169
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169 | Back alignment and structure |
|---|
Score = 41.6 bits (99), Expect = 6e-05
Identities = 28/100 (28%), Positives = 34/100 (34%), Gaps = 31/100 (31%)
Query: 209 NIADKDRKMTALHLAAGKGDARTVERIISE----NPKCYELVDNRGWNFLHYAMVSFHVG 264
N D T LHLAA G VE ++ N D+ G L A
Sbjct: 41 NAEDASGW-TPLHLAAFNGHLEIVEVLLKNGADVNAV-----DHAGMTPLRLAA------ 88
Query: 265 QLRNLLENNSL--ARSLIDEG------DAKGNTPLHVLAA 296
L L+ G D +G+TPLH LAA
Sbjct: 89 ------LFGHLEIVEVLLKNGADVNANDMEGHTPLH-LAA 121
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169 | Back alignment and structure |
|---|
Score = 40.0 bits (95), Expect = 2e-04
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 14/92 (15%)
Query: 209 NIADKDRKMTALHLAAGKGDARTVERIISE----NPKCYELVDNRGWNFLHYAMVSFHVG 264
+ L AA G V +++ N + D GW LH A + H+
Sbjct: 7 HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAE-----DASGWTPLHLAAFNGHLE 61
Query: 265 QLRNLLENNSLARSLIDEGDAKGNTPLHVLAA 296
+ LL+N + ++ D G TPL LAA
Sbjct: 62 IVEVLLKNG----ADVNAVDHAGMTPLR-LAA 88
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137 | Back alignment and structure |
|---|
Score = 57.4 bits (140), Expect = 1e-10
Identities = 32/191 (16%), Positives = 55/191 (28%), Gaps = 84/191 (43%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTAL 128
N +G+T LH+A+ G V L++ + ++ T L
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSD------------PNV-------KDHAGWTPL 47
Query: 129 HEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEK 188
HEA +HG++ + +L LL+
Sbjct: 48 HEACNHGHLKVVEL------------------------------------------LLQH 65
Query: 189 KKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE--NPKCYELV 246
K + T +P LH AA G V+ ++S + V
Sbjct: 66 KAL-VNTTGYQNDSP----------------LHDAAKNGHVDIVKLLLSYGASR---NAV 105
Query: 247 DNRGWNFLHYA 257
+ G + Y
Sbjct: 106 NIFGLRPVDYT 116
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137 | Back alignment and structure |
|---|
Score = 52.4 bits (127), Expect = 7e-09
Identities = 24/86 (27%), Positives = 29/86 (33%), Gaps = 27/86 (31%)
Query: 65 LLLQ----VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQM 116
LLLQ VN D+PLH AAK GH DIV++L+ A
Sbjct: 61 LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS------------------- 101
Query: 117 IRMVNNEKNTALHEAVSHGNVDLFKL 142
VN + L L
Sbjct: 102 RNAVNIFGLRPVDYTDDESMKSLLLL 127
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137 | Back alignment and structure |
|---|
Score = 50.5 bits (122), Expect = 3e-08
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 27/86 (31%)
Query: 65 LLLQ----VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQM 116
LLQ N K G TPLH A GH +V +L++ A +
Sbjct: 28 YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL------------VNT---- 71
Query: 117 IRMVNNEKNTALHEAVSHGNVDLFKL 142
+ ++ LH+A +G+VD+ KL
Sbjct: 72 ---TGYQNDSPLHDAAKNGHVDIVKL 94
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 2e-06
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 209 NIADKDRKMTALHLAAGKGDARTVERIISE----NPKCYELVDNRGWNFLHYAMVSFHVG 264
+ R T LH+A+ KGD +VE ++ N K D+ GW LH A H+
Sbjct: 3 DPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK-----DHAGWTPLHEACNHGHLK 57
Query: 265 QLRNLLENNSLARSLIDEGDAKGNTPLHVLAA 296
+ LL++ +L++ + ++PLH AA
Sbjct: 58 VVELLLQHK----ALVNTTGYQNDSPLH-DAA 84
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 8e-05
Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 32/122 (26%)
Query: 194 KETDQYGWTPIQSTS------------------NIADKDRKMTALHLAAGKGDARTVERI 235
T+ G T + S N+ D T LH A G + VE +
Sbjct: 4 PFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW-TPLHEACNHGHLKVVELL 62
Query: 236 ISE----NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPL 291
+ N + + LH A + HV ++ LL A + + G P+
Sbjct: 63 LQHKALVNTT-----GYQNDSPLHDAAKNGHVDIVKLLLSYG--AS--RNAVNIFGLRPV 113
Query: 292 HV 293
Sbjct: 114 DY 115
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162 | Back alignment and structure |
|---|
Score = 57.8 bits (141), Expect = 1e-10
Identities = 32/205 (15%), Positives = 51/205 (24%), Gaps = 83/205 (40%)
Query: 72 KGDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHE 130
L AA G + + L++ + A N TAL
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVN------------VNA-------QNGFGRTALQV 44
Query: 131 AVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKK 190
GN ++ + LL +
Sbjct: 45 M-KLGNPEIARR------------------------------------------LLLRGA 61
Query: 191 NLIKETDQYGWTPIQSTS------------------NIADKDRKMTALHLAAGKGDARTV 232
N D+ G+ I + NI D + LHLAA +G R V
Sbjct: 62 N-PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN-LPLHLAAKEGHLRVV 119
Query: 233 ERIISENPKCYELVDNRGWNFLHYA 257
E ++ +++G A
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLA 144
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162 | Back alignment and structure |
|---|
Score = 51.2 bits (124), Expect = 3e-08
Identities = 24/173 (13%), Positives = 43/173 (24%), Gaps = 81/173 (46%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
+ K G +H AA+ G D ++ L+E A + +NE
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD------------VNI-------EDNEG 103
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
N LH A G++ + +
Sbjct: 104 NLPLHLAAKEGHLRVVEF------------------------------------------ 121
Query: 185 LLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS 237
L++ + + + G T LA G V + +
Sbjct: 122 LVKHTASNVGHRNHKGDTA----------------CDLARLYGRNEVVSLMQA 158
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162 | Back alignment and structure |
|---|
Score = 47.4 bits (114), Expect = 6e-07
Identities = 26/195 (13%), Positives = 57/195 (29%), Gaps = 73/195 (37%)
Query: 120 VNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIY 179
+ L A + G+++ L+ + +
Sbjct: 1 MAEPWGNELASAAARGDLEQLTS-------LLQNNVN----------------------- 30
Query: 180 AALPKLLEKKKNLIKETDQYGWTPIQSTS-----------------NIADKDRKMTALHL 222
+ + +G T +Q ++ D+ +H
Sbjct: 31 -------------VNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGF-AVIHD 76
Query: 223 AAGKGDARTVERIISE----NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARS 278
AA G T++ ++ N + DN G LH A H+ + L+++ + S
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIE-----DNEGNLPLHLAAKEGHLRVVEFLVKHTA---S 128
Query: 279 LIDEGDAKGNTPLHV 293
+ + KG+T +
Sbjct: 129 NVGHRNHKGDTACDL 143
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162 | Back alignment and structure |
|---|
Score = 40.4 bits (96), Expect = 2e-04
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 31/95 (32%)
Query: 214 DRKMTALHLAAGKGDARTVERIISE----NPKCYELVDNRGWNFLHYAMVSFHVGQLRNL 269
+ L AA +GD + ++ N + + G L
Sbjct: 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQ-----NGFGRTALQVM------------ 45
Query: 270 LENNSL--ARSLIDEG------DAKGNTPLHVLAA 296
+ + AR L+ G D G +H AA
Sbjct: 46 -KLGNPEIARRLLLRGANPDLKDRTGFAVIH-DAA 78
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162 | Back alignment and structure |
|---|
Score = 38.9 bits (92), Expect = 5e-04
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 20/94 (21%)
Query: 209 NIADKDRKMTALHLAAGKGDARTVERIISE----NPKCYELVDNRGWNFLHYAMVSFHVG 264
N + + TAL + G+ R++ + K D G+ +H A + +
Sbjct: 32 NAQNGFGR-TALQVMK-LGNPEIARRLLLRGANPDLK-----DRTGFAVIHDAARAGFLD 84
Query: 265 QLRNLLEN--NSLARSLIDEGDAKGNTPLHVLAA 296
L+ LLE + ++ D +GN PLH LAA
Sbjct: 85 TLQTLLEFQAD------VNIEDNEGNLPLH-LAA 111
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192 | Back alignment and structure |
|---|
Score = 57.4 bits (140), Expect = 3e-10
Identities = 31/217 (14%), Positives = 61/217 (28%), Gaps = 94/217 (43%)
Query: 67 LQVNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNN 122
N + TPL +A G + + L+E K +E +
Sbjct: 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK------------LED-------KDI 66
Query: 123 EKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAAL 182
E +TAL AV + + + + L+ + S+
Sbjct: 67 EGSTALIWAVKNNRLGIAEK-------LLSKGSN-------------------------- 93
Query: 183 PKLLEKKKNLIKETDQYGWTPIQSTS------------------NIADKDRKMTALHLAA 224
+ D G TP+ + N + + + T L +A+
Sbjct: 94 ----------VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE-TPLIVAS 142
Query: 225 GKGDARTVERIISE----NPKCYELVDNRGWNFLHYA 257
G + V++++ + + D G A
Sbjct: 143 KYGRSEIVKKLLELGADISAR-----DLTGLTAEASA 174
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192 | Back alignment and structure |
|---|
Score = 55.5 bits (135), Expect = 1e-09
Identities = 26/254 (10%), Positives = 51/254 (20%), Gaps = 115/254 (45%)
Query: 69 VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTAL 128
++ G+ + + + L + ++ T L
Sbjct: 4 MDKNGEIVEKIKDEKSINQNLDFLRN-YR-----------------------DSYNRTPL 39
Query: 129 HEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEK 188
A G + L+E
Sbjct: 40 MVACMLGMENAIDK------------------------------------------LVEN 57
Query: 189 KKNLIKETDQYGWTPIQSTS------------------NIADKDRKMTALHLAAGKGDAR 230
+++ D G T + N D K T L + G +
Sbjct: 58 FDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK-TPLMWSIIFGYSE 115
Query: 231 TVERIISE----NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSL--ARSLIDEG- 283
++ N + + G L A + + L++ G
Sbjct: 116 MSYFLLEHGANVNDR-----NLEGETPLIVAS------------KYGRSEIVKKLLELGA 158
Query: 284 -----DAKGNTPLH 292
D G T
Sbjct: 159 DISARDLTGLTAEA 172
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192 | Back alignment and structure |
|---|
Score = 47.0 bits (113), Expect = 1e-06
Identities = 28/173 (16%), Positives = 40/173 (23%), Gaps = 82/173 (47%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
VN K G TPL + FG+ ++ L+E A + N E
Sbjct: 94 VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN------------VND-------RNLEG 134
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
T L A +G ++ K
Sbjct: 135 ETPLIVASKYGRSEIVKK------------------------------------------ 152
Query: 185 LLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS 237
LLE + I D G T A G ++
Sbjct: 153 LLELGAD-ISARDLTGLTA----------------EASARIFGRQEVIKIFTE 188
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192 | Back alignment and structure |
|---|
Score = 39.3 bits (93), Expect = 5e-04
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIERAK 97
++A+ G T A FG +++++ E +
Sbjct: 160 ISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 4e-10
Identities = 31/253 (12%), Positives = 49/253 (19%), Gaps = 95/253 (37%)
Query: 68 QVNAK------GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMV 120
L AA G ++V+ ++
Sbjct: 10 SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-------------------PSQP 50
Query: 121 NNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYA 180
N E TALH A+ N +
Sbjct: 51 NEEGITALHNAICGANYSIVDF-------------------------------------- 72
Query: 181 ALPKLLEKKKNLIKETDQYGWTP----------------IQSTSNIADKDRK--MTALHL 222
L+ N + D +GWTP +Q + I TA
Sbjct: 73 ----LITAGAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK 127
Query: 223 AAG--KGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLI 280
+G A + + YA+ + L +
Sbjct: 128 CDPYREGYADCATYLADVEQS-----MGLMNSGAVYALWDYSAEFGDELSFREG-ESVTV 181
Query: 281 DEGDAKGNTPLHV 293
D T
Sbjct: 182 LRRDGPEETDWWW 194
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 9e-06
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 28/116 (24%)
Query: 185 LLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE--NPKC 242
+L K + ++ + P + L AA G+ V++ + E +P
Sbjct: 4 VLRKAGS-PRKARRARLNP-------------LVLLLDAALTGELEVVQQAVKEMNDP-- 47
Query: 243 YELVDNRGWNFLHYAMVSFHVGQLRNLLEN--NSLARSLIDEGDAKGNTPLHVLAA 296
+ G LH A+ + + L+ N ++ D+ G TPLH AA
Sbjct: 48 -SQPNEEGITALHNAICGANYSIVDFLITAGAN------VNSPDSHGWTPLH-CAA 95
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 55.0 bits (134), Expect = 6e-10
Identities = 40/184 (21%), Positives = 63/184 (34%), Gaps = 82/184 (44%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEA 131
G TPLHLAA+ GH ++V++L+E A + A + T LH A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD------------VNA-------KDKNGRTPLHLA 42
Query: 132 VSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKN 191
+G++++ KL LLE +
Sbjct: 43 ARNGHLEVVKL------------------------------------------LLEAGAD 60
Query: 192 LIKETDQYGWTPIQSTS------------------NIADKDRKMTALHLAAGKGDARTVE 233
+ D+ G TP+ + N DK+ + T LHLAA G V+
Sbjct: 61 -VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVK 118
Query: 234 RIIS 237
++
Sbjct: 119 LLLE 122
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 49.7 bits (120), Expect = 5e-08
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 23/78 (29%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
VNAK G TPLHLAA+ GH ++V++L+E A + A +
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------------VNA-------KDKNG 101
Query: 125 NTALHEAVSHGNVDLFKL 142
T LH A +G++++ KL
Sbjct: 102 RTPLHLAARNGHLEVVKL 119
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 44.6 bits (107), Expect = 4e-06
Identities = 17/30 (56%), Positives = 23/30 (76%), Gaps = 3/30 (10%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER 95
VNAK G TPLHLAA+ GH ++V++L+E
Sbjct: 94 VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 40.8 bits (97), Expect = 7e-05
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 19/94 (20%)
Query: 209 NIADKDRKMTALHLAAGKGDARTVERIISE----NPKCYELVDNRGWNFLHYAMVSFHVG 264
N DK+ + T LHLAA G V+ ++ N K D G LH A + H+
Sbjct: 29 NAKDKNGR-TPLHLAARNGHLEVVKLLLEAGADVNAK-----DKNGRTPLHLAARNGHLE 82
Query: 265 QLRNLLEN--NSLARSLIDEGDAKGNTPLHVLAA 296
++ LLE + ++ D G TPLH LAA
Sbjct: 83 VVKLLLEAGAD------VNAKDKNGRTPLH-LAA 109
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 38.9 bits (92), Expect = 3e-04
Identities = 28/92 (30%), Positives = 34/92 (36%), Gaps = 30/92 (32%)
Query: 217 MTALHLAAGKGDARTVERIISE----NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272
T LHLAA G V+ ++ N K D G LH A N
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAK-----DKNGRTPLHLA------------ARN 45
Query: 273 NSL--ARSLIDEG------DAKGNTPLHVLAA 296
L + L++ G D G TPLH LAA
Sbjct: 46 GHLEVVKLLLEAGADVNAKDKNGRTPLH-LAA 76
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 6e-10
Identities = 29/208 (13%), Positives = 46/208 (22%), Gaps = 92/208 (44%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEA 131
L AA+ G D VR+L+ A + + LH A
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTT--------------------DWLGTSPLHLA 41
Query: 132 VSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKN 191
+G+ ++ LL +
Sbjct: 42 AQYGHFSTTEV------------------------------------------LLRAGVS 59
Query: 192 LIKETDQYGWTPIQSTS------------------NIADKDRKMTALHLAAGKGDARTVE 233
+ TP+ + N D KMTALH A VE
Sbjct: 60 -RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML-KMTALHWATEHNHQEVVE 117
Query: 234 RIISE----NPKCYELVDNRGWNFLHYA 257
+I + + +
Sbjct: 118 LLIKYGADVHTQ-----SKFCKTAFDIS 140
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153 | Back alignment and structure |
|---|
Score = 48.5 bits (117), Expect = 2e-07
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 23/78 (29%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
VNAK T LH A + H ++V +LI+ A + +
Sbjct: 93 VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD------------VHT-------QSKFC 133
Query: 125 NTALHEAVSHGNVDLFKL 142
TA ++ +GN DL ++
Sbjct: 134 KTAFDISIDNGNEDLAEI 151
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 4e-07
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 23/78 (29%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
+A+ TPLH+AA GH +IV VL++ A + A + K
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGAD------------VNA-------KDMLK 100
Query: 125 NTALHEAVSHGNVDLFKL 142
TALH A H + ++ +L
Sbjct: 101 MTALHWATEHNHQEVVEL 118
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153 | Back alignment and structure |
|---|
Score = 39.7 bits (94), Expect = 3e-04
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 18/94 (19%)
Query: 209 NIADKDRKMTALHLAAGKGDARTVERIISE----NPKCYELVDNRGWNFLHYAMVSFHVG 264
+ LHLAA G T E ++ + + LH A H
Sbjct: 27 PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-----TKVDRTPLHMAASEGHAN 81
Query: 265 QLRNLLEN--NSLARSLIDEGDAKGNTPLHVLAA 296
+ LL++ + ++ D T LH A
Sbjct: 82 IVEVLLKHGAD------VNAKDMLKMTALH-WAT 108
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 6e-10
Identities = 31/251 (12%), Positives = 64/251 (25%), Gaps = 51/251 (20%)
Query: 57 EILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQM 116
+L ++ + A+ LAA+ GH ++ L E E +
Sbjct: 112 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE-----LAPTEIMAM-------- 158
Query: 117 IRMVNNEKNTALHEAVSHGNVDLFK--LKKTNNLILIFRDSDEKTNILF---KFRHLDLF 171
+ E A A +G++ + + ++ + H ++
Sbjct: 159 ---IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 215
Query: 172 RIQTNSIYAALPKLLEKKKNLIKETD---QYGWTPIQS--TSNIADKDRKMTALHLAAGK 226
LL+ L +YG + ++ A L+
Sbjct: 216 NF-----------LLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPD 264
Query: 227 GDARTVERIISENPKCYELVDNRGWNFLHYAM---VSFHVGQLRNLLENNSLARSL-IDE 282
G V + G+ L + + +R LL +
Sbjct: 265 GVFDLVTKSECLQ----------GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT 314
Query: 283 GDAKGNTPLHV 293
N L +
Sbjct: 315 IPGDANELLRL 325
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 33/204 (16%), Positives = 57/204 (27%), Gaps = 36/204 (17%)
Query: 55 VEEILEKCPALLLQ-VNAKGDTPLHLAA-KFGHFDIVRVLIE-RAKLAQRGDEELENR-- 109
+ + E P + A+ AA GH +++ L++ LA E E
Sbjct: 179 LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEK 238
Query: 110 -IEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHL 168
+ F E + A + G DL + + R
Sbjct: 239 YVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLR--------------- 283
Query: 169 DLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRK-MTALHLAAGKG 227
N I LL+ + L+ I++ + A L LA G
Sbjct: 284 -------NLIRRNDEVLLDDIRFLLSIPG------IKALAPTATIPGDANELLRLALRLG 330
Query: 228 DARTVERIISENPKCYELVDNRGW 251
+ ++S P L +
Sbjct: 331 NQGACALLLS-IPSVLALTKANNY 353
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 7e-04
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 2/68 (2%)
Query: 30 TAKAKNTILHINIISSERE--NVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFD 87
+L I ++ + + K A + + L LA + G+
Sbjct: 274 ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG 333
Query: 88 IVRVLIER 95
+L+
Sbjct: 334 ACALLLSI 341
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156 | Back alignment and structure |
|---|
Score = 55.1 bits (134), Expect = 1e-09
Identities = 32/208 (15%), Positives = 53/208 (25%), Gaps = 90/208 (43%)
Query: 55 VEEILEKCPALLLQVNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRI 110
V +L + +A G T L + FG I L+++ A
Sbjct: 18 VRRLLHRELV---HPDALNRFGKTALQVMM-FGSTAIALELLKQGAS------------P 61
Query: 111 EAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDL 170
+ + +H+A G +D K+
Sbjct: 62 NV-------QDTSGTSPVHDAARTGFLDTLKV---------------------------- 86
Query: 171 FRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDAR 230
L+E + + D G P +HLA +G
Sbjct: 87 --------------LVEHGAD-VNVPDGTGALP----------------IHLAVQEGHTA 115
Query: 231 TVERIISE-NPKCYELVDNRGWNFLHYA 257
V + +E + D RG L A
Sbjct: 116 VVSFLAAESDL---HRRDARGLTPLELA 140
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156 | Back alignment and structure |
|---|
Score = 51.6 bits (125), Expect = 2e-08
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 22/77 (28%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKN 125
VN G P+HLA + GH +V L + + +
Sbjct: 94 VNVPDGTGALPIHLAVQEGHTAVVSFLAAESD-------------------LHRRDARGL 134
Query: 126 TALHEAVSHGNVDLFKL 142
T L A+ G DL +
Sbjct: 135 TPLELALQRGAQDLVDI 151
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156 | Back alignment and structure |
|---|
Score = 48.9 bits (118), Expect = 1e-07
Identities = 28/181 (15%), Positives = 47/181 (25%), Gaps = 87/181 (48%)
Query: 65 LLLQ----VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQM 116
LL+ N + G +P+H AA+ G D ++VL+E A +
Sbjct: 53 ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD------------VNV---- 96
Query: 117 IRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTN 176
+ +H AV G+ +
Sbjct: 97 ---PDGTGALPIHLAVQEGHTAVV------------------------------------ 117
Query: 177 SIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERII 236
L + + + D G TP L LA +G V+ +
Sbjct: 118 -------SFLAAESD-LHRRDARGLTP----------------LELALQRGAQDLVDILQ 153
Query: 237 S 237
Sbjct: 154 G 154
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156 | Back alignment and structure |
|---|
Score = 41.6 bits (99), Expect = 6e-05
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 22/87 (25%)
Query: 218 TALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSL-- 275
L AA +GD + V R++ + ++ G L M S
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-------------FGSTAI 50
Query: 276 ARSLIDEG------DAKGNTPLHVLAA 296
A L+ +G D G +P+H AA
Sbjct: 51 ALELLKQGASPNVQDTSGTSPVH-DAA 76
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 2e-09
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 20/75 (26%)
Query: 69 VNAKGDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTA 127
+ + L AA+ G D VR+L+ A + A + +T
Sbjct: 20 MGSDLGKKLLEAARAGQDDEVRILMANGAD------------VAA-------KDKNGSTP 60
Query: 128 LHEAVSHGNVDLFKL 142
LH A +G++++ KL
Sbjct: 61 LHLAARNGHLEVVKL 75
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 8e-07
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 23/80 (28%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
V AK G TPLHLAA+ GH ++V++L+E A + +
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-------------------VXAQDKFG 90
Query: 125 NTALHEAVSHGNVDLFKLKK 144
TA ++ +GN DL ++ +
Sbjct: 91 KTAFDISIDNGNEDLAEILQ 110
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 2e-04
Identities = 23/193 (11%), Positives = 43/193 (22%), Gaps = 87/193 (45%)
Query: 80 AAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVD 138
+ H L+ R + + ++ L EA G D
Sbjct: 1 GSSHHHHHHSSGLVPRGSH----------------------MGSDLGKKLLEAARAGQDD 38
Query: 139 LFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQ 198
++ L+ + + D+
Sbjct: 39 EVRI------------------------------------------LMANGAD-VAAKDK 55
Query: 199 YGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE--NPKCYELVDNRGWNFLHY 256
G TP LHLAA G V+ ++ + D G
Sbjct: 56 NGSTP----------------LHLAARNGHLEVVKLLLEAGADV---XAQDKFGKTAFDI 96
Query: 257 AMVSFHVGQLRNL 269
++ + + L
Sbjct: 97 SIDNGNEDLAEIL 109
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156 | Back alignment and structure |
|---|
Score = 54.0 bits (131), Expect = 3e-09
Identities = 32/231 (13%), Positives = 49/231 (21%), Gaps = 99/231 (42%)
Query: 72 KGDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHE 130
L AA G + VR L+E A A N+ +
Sbjct: 11 PSADWLATAAARGRVEEVRALLEAGAN------------PNA-------PNSYGRRPIQV 51
Query: 131 AVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKK 190
G+ + +L LL
Sbjct: 52 M-MMGSARVAEL------------------------------------------LLLHGA 68
Query: 191 NLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE--NPKCYELVDN 248
D T +H AA +G T+ + ++ D
Sbjct: 69 E-PNCADPATLT---------------RPVHDAAREGFLDTLVVLHRAGARL---DVRDA 109
Query: 249 RGWNFLHYAMVSFHVGQLRNLLENNSL--ARSLIDEG-DAKGNTPLHVLAA 296
G + A E AR L +G+ + AA
Sbjct: 110 WGRLPVDLA------------EELGHRDVARYLRAAAGGTRGSNHARIDAA 148
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 2e-06
Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 28/87 (32%)
Query: 65 LLLQ----VNAKGD----TPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQ 115
LLL N P+H AA+ G D + VL A R++
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA------------RLDV--- 106
Query: 116 MIRMVNNEKNTALHEAVSHGNVDLFKL 142
+ + A G+ D+ +
Sbjct: 107 ----RDAWGRLPVDLAEELGHRDVARY 129
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 3e-06
Identities = 17/183 (9%), Positives = 34/183 (18%), Gaps = 80/183 (43%)
Query: 68 QVNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNE 123
NA G P+ + G + +L+ A+
Sbjct: 37 NPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCAD------------------PAT 77
Query: 124 KNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALP 183
+H+A G +D +
Sbjct: 78 LTRPVHDAAREGFLDTLVV----------------------------------------- 96
Query: 184 KLLEKKKNLIKETDQYGWTPIQSTS-------------NIADKDRKMTALHLAAGKGDAR 230
L + D +G P+ + A +G +
Sbjct: 97 -LHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS-NHARIDAAEGPSD 153
Query: 231 TVE 233
+
Sbjct: 154 IPD 156
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 5e-06
Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 30/81 (37%)
Query: 65 LLLQ----VNAK---GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMI 117
+L + ++ + G P+ LA + GH D+ R L A
Sbjct: 96 VLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA--------------------- 134
Query: 118 RMVNNEKNTALHEAVSHGNVD 138
+ + G D
Sbjct: 135 --GGTRGSNHARIDAAEGPSD 153
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156 | Back alignment and structure |
|---|
Score = 38.2 bits (90), Expect = 8e-04
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 24/95 (25%)
Query: 211 ADKDRKMTALHLAAGKGDARTVERIISE--NPKCYELVDNRGWNFLHYAMVSFHVGQLRN 268
+ + L AA +G V ++ NP ++ G + M
Sbjct: 7 SSMEPSADWLATAAARGRVEEVRALLEAGANP---NAPNSYGRRPIQVMM--------MG 55
Query: 269 LLENNSLARSLIDEG------DAKGNT-PLHVLAA 296
+A L+ G D T P+H AA
Sbjct: 56 SAR---VAELLLLHGAEPNCADPATLTRPVH-DAA 86
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 4e-09
Identities = 26/183 (14%), Positives = 45/183 (24%), Gaps = 69/183 (37%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
++ D L AA G + VR L+E A A +N
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGAD------------PNA-------LNRFG 45
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILI-------FRDSDEKTNILF---KFRHLDLFRIQ 174
+ G+ + +L L+ D T + + LD +
Sbjct: 46 RRPIQVM-MMGSAQVAEL-------LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVV- 96
Query: 175 TNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVER 234
L + D +G P + LA +G
Sbjct: 97 ----------LHRAGAR-LDVCDAWGRLP----------------VDLAEEQGHRDIARY 129
Query: 235 IIS 237
+ +
Sbjct: 130 LHA 132
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 45.9 bits (110), Expect = 1e-06
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 28/87 (32%)
Query: 65 LLLQ----VNAK---GDT-PLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQ 115
LLL N T P+H AA+ G D + VL A R++
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA------------RLDV--- 106
Query: 116 MIRMVNNEKNTALHEAVSHGNVDLFKL 142
+ + A G+ D+ +
Sbjct: 107 ----CDAWGRLPVDLAEEQGHRDIARY 129
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 7e-06
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER 95
++ G P+ LA + GH DI R L
Sbjct: 104 LDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 42.4 bits (101), Expect = 2e-05
Identities = 24/160 (15%), Positives = 40/160 (25%), Gaps = 65/160 (40%)
Query: 117 IRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTN 176
I M+ + L A + G V+ +
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQ---------------------------------- 30
Query: 177 SIYAALPKLLEKKKNLIKETDQYGWTPIQSTS-----------------NIADKDRKMTA 219
LLE + +++G PIQ N AD
Sbjct: 31 --------LLEAGAD-PNALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCADPATLTRP 81
Query: 220 LHLAAGKGDARTVERIISE--NPKCYELVDNRGWNFLHYA 257
+H AA +G T+ + ++ D G + A
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARL---DVCDAWGRLPVDLA 118
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 42.0 bits (100), Expect = 3e-05
Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 35/127 (27%)
Query: 193 IKETDQYGWTPIQSTS------------------NIADKDRKMTALHLAAGKGDARTVER 234
I + + + N ++ + + G A+ E
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRF-GRRPIQVMM-MGSAQVAEL 62
Query: 235 IISE----NPKCYELVDNRGWNF-LHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNT 289
++ N D +H A + L L AR +D DA G
Sbjct: 63 LLLHGAEPNCA-----DPATLTRPVHDAAREGFLDTLVVLHRAG--AR--LDVCDAWGRL 113
Query: 290 PLHVLAA 296
P+ LA
Sbjct: 114 PVD-LAE 119
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115 | Back alignment and structure |
|---|
Score = 52.0 bits (126), Expect = 6e-09
Identities = 35/194 (18%), Positives = 60/194 (30%), Gaps = 89/194 (45%)
Query: 69 VNAK-GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNT 126
+K G+TPLH AAK GH + V+ L+ + A + A + + NT
Sbjct: 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD------------VNA-------RSKDGNT 44
Query: 127 ALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLL 186
LH A +G+ ++ KL L+ + +D
Sbjct: 45 PLHLAAKNGHAEIVKL-------LLAKGAD------------------------------ 67
Query: 187 EKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE----NPKC 242
+ + G TP HLA G V+ + ++ N +
Sbjct: 68 ------VNARSKDGNTP----------------EHLAKKNGHHEIVKLLDAKGADVNAR- 104
Query: 243 YELVDNRGWNFLHY 256
+ H+
Sbjct: 105 ----SWGSSHHHHH 114
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115 | Back alignment and structure |
|---|
Score = 44.7 bits (107), Expect = 3e-06
Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 31/100 (31%)
Query: 209 NIADKDRKMTALHLAAGKGDARTVERIISE----NPKCYELVDNRGWNFLHYAMVSFHVG 264
KD T LH AA G A V++++S+ N + G LH A
Sbjct: 3 MWGSKDGN-TPLHNAAKNGHAEEVKKLLSKGADVNAR-----SKDGNTPLHLA------- 49
Query: 265 QLRNLLENNSL--ARSLIDEG------DAKGNTPLHVLAA 296
+N + L+ +G GNTP H LA
Sbjct: 50 -----AKNGHAEIVKLLLAKGADVNARSKDGNTPEH-LAK 83
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 36/120 (30%)
Query: 197 DQYGWTPIQSTS------------------NIADKDRKMTALHLAAGKGDARTVERIISE 238
+ G TP+ + + N KD T LHLAA G A V+ ++++
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN-TPLHLAAKNGHAEIVKLLLAK 64
Query: 239 ----NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN--NSLARSLIDEGDAKGNTPLH 292
N + G H A + H ++ L + ++ + H
Sbjct: 65 GADVNAR-----SKDGNTPEHLAKKNGHHEIVKLLDAKGAD------VNARSWGSSHHHH 113
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136 | Back alignment and structure |
|---|
Score = 52.0 bits (126), Expect = 9e-09
Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 82/189 (43%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTAL 128
+ L AA+ G D VR+L+ A + A + T L
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGAD------------VNA-------KDEYGLTPL 51
Query: 129 HEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEK 188
+ A +HG++++ ++ LL+
Sbjct: 52 YLATAHGHLEIVEV------------------------------------------LLKN 69
Query: 189 KKNLIKETDQYGWTPIQSTS------------------NIADKDRKMTALHLAAGKGDAR 230
+ + D G+TP+ + N DK K TA ++ G G+
Sbjct: 70 GAD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGK-TAFDISIGNGNED 127
Query: 231 TVERIISEN 239
E + N
Sbjct: 128 LAEILQKLN 136
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136 | Back alignment and structure |
|---|
Score = 46.6 bits (112), Expect = 7e-07
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 23/78 (29%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
VNA G TPLHLAA GH +I VL++ A + +
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD-------------------VNAQDKFG 113
Query: 125 NTALHEAVSHGNVDLFKL 142
TA ++ +GN DL ++
Sbjct: 114 KTAFDISIGNGNEDLAEI 131
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136 | Back alignment and structure |
|---|
Score = 41.2 bits (98), Expect = 5e-05
Identities = 22/97 (22%), Positives = 29/97 (29%), Gaps = 30/97 (30%)
Query: 209 NIADKDRKMTALHLAAGKGDARTVERIISE----NPKCYELVDNRGWNFLHYAMVSFHVG 264
N D+ T L+LA G VE ++ N D G+ LH A
Sbjct: 41 NAKDEYGL-TPLYLATAHGHLEIVEVLLKNGADVNAV-----DAIGFTPLHLAA------ 88
Query: 265 QLRNLLENNSL--ARSLIDEG------DAKGNTPLHV 293
L A L+ G D G T +
Sbjct: 89 ------FIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 1e-04
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIE 94
VNA+ G T ++ G+ D+ +L +
Sbjct: 106 VNAQDKFGKTAFDISIGNGNEDLAEILQK 134
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93 | Back alignment and structure |
|---|
Score = 49.3 bits (119), Expect = 3e-08
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 23/78 (29%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEK 124
VNAK G TPLHLAA+ GH ++V++L+E A + A +
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------------VNA-------KDKNG 68
Query: 125 NTALHEAVSHGNVDLFKL 142
T LH A +G++++ KL
Sbjct: 69 RTPLHLAARNGHLEVVKL 86
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93 | Back alignment and structure |
|---|
Score = 47.7 bits (115), Expect = 1e-07
Identities = 35/166 (21%), Positives = 55/166 (33%), Gaps = 79/166 (47%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEA 131
G TPLHLAA+ GH ++V++L+E A + A + T LH A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD------------VNA-------KDKNGRTPLHLA 42
Query: 132 VSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKN 191
+G++++ KL L+ +D
Sbjct: 43 ARNGHLEVVKL-------LLEAGAD----------------------------------- 60
Query: 192 LIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS 237
+ D+ G TP LHLAA G V+ ++
Sbjct: 61 -VNAKDKNGRTP----------------LHLAARNGHLEVVKLLLE 89
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93 | Back alignment and structure |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 17/29 (58%), Positives = 23/29 (79%), Gaps = 3/29 (10%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIE 94
VNAK G TPLHLAA+ GH ++V++L+E
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93 | Back alignment and structure |
|---|
Score = 36.9 bits (87), Expect = 7e-04
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 217 MTALHLAAGKGDARTVERIISE----NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272
T LHLAA G V+ ++ N K D G LH A + H+ ++ LLE
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAK-----DKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 273 NSLARSLIDEGDAKGNTPLHVLAA 296
+ ++ D G TPLH LAA
Sbjct: 58 G----ADVNAKDKNGRTPLH-LAA 76
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 5e-08
Identities = 17/173 (9%), Positives = 36/173 (20%), Gaps = 69/173 (39%)
Query: 69 VNAK---GDTPLHLAAKFGHFDIVRVLIERAKLAQRG-DEELENRIEAFRQMIRMVNNEK 124
+ ++ G T + G DI ++G D I A +
Sbjct: 68 IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD------ITA-------LYKPY 114
Query: 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPK 184
+ + + + VD ++ LI
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ---------------------------- 146
Query: 185 LLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS 237
+ D++G T L ++ +
Sbjct: 147 --------LLIKDKWGLTA----------------LEFVKRCQKPIALKMMED 175
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-06
Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 11/97 (11%)
Query: 8 AASAGNSEPFKDMARDVIESLLTAKA--------KNTILHINIISSERENVS-TKFVEEI 58
G ++ ++ + L A ++ NI + + + I
Sbjct: 82 LFQGGGNDITGTT--ELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLI 139
Query: 59 LEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIER 95
+ LL + G T L + ++++ +
Sbjct: 140 FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 6e-05
Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 14/92 (15%)
Query: 211 ADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLL 270
++ + + AA G + + + N L+ + + N
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYDVL------RNNNDE 52
Query: 271 ENNSLARSLIDEG------DAKGNTPLHVLAA 296
++ LI++G +G T L
Sbjct: 53 ARYKISMFLINKGADIKSRTKEGTTLFFPLFQ 84
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 7e-05
Identities = 6/87 (6%), Positives = 19/87 (21%), Gaps = 15/87 (17%)
Query: 217 MTALHLAAGKGDARTVERIISE--NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNS 274
L + + +I++ + K G ++
Sbjct: 43 YDVLRNNNDEARYKISMFLINKGADIKS---RTKEGTTLFFPLFQGGG----NDITGTTE 95
Query: 275 LARSLIDEG------DAKGNTPLHVLA 295
L + +++G +
Sbjct: 96 LCKIFLEKGADITALYKPYKIVVFKNI 122
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 1e-07
Identities = 54/342 (15%), Positives = 105/342 (30%), Gaps = 78/342 (22%)
Query: 13 NSEPF-KDM-ARDVIESLLTAKAKNTILHI--------------NIISSERENVSTKFVE 56
+ F + +DV + + +K I HI + S++E + KFVE
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 57 EILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQM 116
E+L + L + ++ R + QR + L N + F +
Sbjct: 85 EVLRI------------NYKF-LMSPIKTEQRQPSMMTRMYIEQR--DRLYNDNQVFAKY 129
Query: 117 ----IRMVNNEKNTALHEAVSHGNVDLFKLK---KTNNLILIFRDSDEKTNILFKFRHLD 169
++ + AL E NV + + KT + + + + FK L+
Sbjct: 130 NVSRLQPYLKLRQ-ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 170 LFRIQT-NSIYAALPKLLEK-KKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKG 227
L + ++ L KLL + N +D +I + R++ L +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS-NIKLRIHSIQAELRRL--LKSKPYEN 245
Query: 228 ---------DARTVERIISENPKCYELVDNR---------GWNFLHYAMVSFHVGQLRNL 269
+A+ N C L+ R H ++ + L
Sbjct: 246 CLLVLLNVQNAKAWNAF---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT----L 298
Query: 270 LENNS---LARSL-IDEGD----AKGNTPLHV-LAAVRPKEF 302
+ L + L D P + + A ++
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 9e-07
Identities = 51/316 (16%), Positives = 97/316 (30%), Gaps = 102/316 (32%)
Query: 23 DVIESLLTAKAKNTI-LHINIISSE-RENVST---------KFVEEILEKC--------- 62
D L + T ++II+ R+ ++T + I+E
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 63 ----------------PALLLQV---NAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGD 103
P +LL + + + + K + L ++
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL----------HKYSLVEKQP 421
Query: 104 EELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKT---NNLILIFRDSDEKTN 160
+E I + +++ E ALH ++ VD + + KT ++LI + D
Sbjct: 422 KESTISIPSIYLELKV-KLENEYALHRSI----VDHYNIPKTFDSDDLIPPYLD-----Q 471
Query: 161 ILFKF--RHL---------DLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSN 209
+ HL LFR ++ + LE+K I+ W S N
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFR----MVFLDF-RFLEQK---IRHDS-TAWNASGSILN 522
Query: 210 IADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNL 269
+ + I +N YE + N +FL + + +L
Sbjct: 523 TL---------------QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Query: 270 LENNSLARSLIDEGDA 285
L +L+ E +A
Sbjct: 568 LR-----IALMAEDEA 578
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 3e-05
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 21/108 (19%)
Query: 35 NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
T LH+ + S +R ++ + + L + L + KG T LH + + +++L+
Sbjct: 170 ETALHLAVRSVDRTSLH---IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL- 225
Query: 95 RAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKL 142
+ I + N T L A + +L
Sbjct: 226 -----RGK------------ASIEIANESGETPLDIAKRLKHEHCEEL 256
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 4e-05
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 218 TALHLAAGKGDARTVERI--ISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSL 275
TALHLA D ++ + + +N + +G LHY ++ + L+ LL
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG--- 227
Query: 276 ARSLIDEGDAKGNTPLHV 293
++ I+ + G TPL +
Sbjct: 228 -KASIEIANESGETPLDI 244
|
| >2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 1e-04
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 28/92 (30%)
Query: 65 LLLQ-------VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMI 117
++Q A G+T LH AA + D +++L++ R ++
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG------------------RALV 252
Query: 118 RMVNNEKNTALHEAVSHGN---VDLFKLKKTN 146
VN TAL A + +L + +
Sbjct: 253 GTVNEAGETALDIARKKHHKECEELLEQAQAG 284
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 303 | |||
| 1n11_A | 437 | Ankyrin; clathrin, BAND 3, anion exchanger, struct | 100.0 | |
| 1n11_A | 437 | Ankyrin; clathrin, BAND 3, anion exchanger, struct | 100.0 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 100.0 | |
| 3utm_A | 351 | Tankyrase-1; tankyrase, TNKS, ankryin repeat clust | 100.0 | |
| 1yyh_A | 253 | HN1;, notch 1, ankyrin domain; ankyrin repeats, ce | 100.0 | |
| 4g8k_A | 337 | 2-5A-dependent ribonuclease; ankyrin-repeat domain | 100.0 | |
| 3d9h_A | 285 | CDNA FLJ77766, highly similar to HOMO sapiens anky | 100.0 | |
| 2fo1_E | 373 | LIN-12 protein; beta-barrel, protein-DNA complex, | 100.0 | |
| 2xai_A | 261 | ASB-9, ankyrin repeat and SOCS box protein 9; tran | 100.0 | |
| 4b93_B | 269 | Ankyrin repeat domain-containing protein 27; endoc | 100.0 | |
| 2dzn_A | 228 | Probable 26S proteasome regulatory subunit P28; an | 100.0 | |
| 3b7b_A | 237 | Euchromatic histone-lysine N-methyltransferase 1; | 100.0 | |
| 1oy3_D | 282 | Transcription factor inhibitor I-kappa-B-beta; pro | 100.0 | |
| 3aji_A | 231 | 26S proteasome non-ATPase regulatory subunit 10; g | 100.0 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 100.0 | |
| 1s70_B | 299 | 130 kDa myosin-binding subunit of smooth muscle my | 100.0 | |
| 3ljn_A | 364 | Hypothetical protein; ankyrin, structural genomics | 100.0 | |
| 2xai_A | 261 | ASB-9, ankyrin repeat and SOCS box protein 9; tran | 100.0 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 100.0 | |
| 3utm_A | 351 | Tankyrase-1; tankyrase, TNKS, ankryin repeat clust | 100.0 | |
| 3ljn_A | 364 | Hypothetical protein; ankyrin, structural genomics | 100.0 | |
| 2f8y_A | 223 | Notch homolog 1, translocation-associated (drosoph | 100.0 | |
| 4g8k_A | 337 | 2-5A-dependent ribonuclease; ankyrin-repeat domain | 100.0 | |
| 3d9h_A | 285 | CDNA FLJ77766, highly similar to HOMO sapiens anky | 100.0 | |
| 2fo1_E | 373 | LIN-12 protein; beta-barrel, protein-DNA complex, | 100.0 | |
| 3eu9_A | 240 | Huntingtin-interacting protein 14; epigenetics, an | 100.0 | |
| 2rfa_A | 232 | Transient receptor potential cation channel subfa | 100.0 | |
| 1oy3_D | 282 | Transcription factor inhibitor I-kappa-B-beta; pro | 100.0 | |
| 3kea_A | 285 | K1L; tropism, ANK repeat, viral protein; 2.30A {Va | 100.0 | |
| 1ikn_D | 236 | Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 | 100.0 | |
| 2rfa_A | 232 | Transient receptor potential cation channel subfa | 100.0 | |
| 2f8y_A | 223 | Notch homolog 1, translocation-associated (drosoph | 100.0 | |
| 1yyh_A | 253 | HN1;, notch 1, ankyrin domain; ankyrin repeats, ce | 100.0 | |
| 3kea_A | 285 | K1L; tropism, ANK repeat, viral protein; 2.30A {Va | 100.0 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 100.0 | |
| 3eu9_A | 240 | Huntingtin-interacting protein 14; epigenetics, an | 100.0 | |
| 2etb_A | 256 | Transient receptor potential cation channel subfam | 100.0 | |
| 1ikn_D | 236 | Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 | 100.0 | |
| 2pnn_A | 273 | Transient receptor potential cation channel subfa | 100.0 | |
| 3aji_A | 231 | 26S proteasome non-ATPase regulatory subunit 10; g | 100.0 | |
| 4gpm_A | 169 | Engineered protein OR264; de novo protein, structu | 100.0 | |
| 3b7b_A | 237 | Euchromatic histone-lysine N-methyltransferase 1; | 100.0 | |
| 3hra_A | 201 | Ankyrin repeat family protein; structural protein; | 100.0 | |
| 2etb_A | 256 | Transient receptor potential cation channel subfam | 100.0 | |
| 2dzn_A | 228 | Probable 26S proteasome regulatory subunit P28; an | 100.0 | |
| 2pnn_A | 273 | Transient receptor potential cation channel subfa | 100.0 | |
| 1sw6_A | 327 | Regulatory protein SWI6; transcription regulation, | 100.0 | |
| 3hra_A | 201 | Ankyrin repeat family protein; structural protein; | 100.0 | |
| 4b93_B | 269 | Ankyrin repeat domain-containing protein 27; endoc | 100.0 | |
| 3jxi_A | 260 | Vanilloid receptor-related osmotically activated p | 100.0 | |
| 4gpm_A | 169 | Engineered protein OR264; de novo protein, structu | 100.0 | |
| 3jxi_A | 260 | Vanilloid receptor-related osmotically activated p | 100.0 | |
| 1s70_B | 299 | 130 kDa myosin-binding subunit of smooth muscle my | 100.0 | |
| 4hbd_A | 276 | KN motif and ankyrin repeat domain-containing Pro; | 100.0 | |
| 1sw6_A | 327 | Regulatory protein SWI6; transcription regulation, | 100.0 | |
| 4hbd_A | 276 | KN motif and ankyrin repeat domain-containing Pro; | 100.0 | |
| 3v30_A | 172 | DNA-binding protein rfxank; structural genomics co | 99.98 | |
| 2rfm_A | 192 | Putative ankyrin repeat protein TV1425; ANK repeat | 99.98 | |
| 2vge_A | 229 | RELA-associated inhibitor; iaspp, nucleus, apoptos | 99.98 | |
| 3v31_A | 167 | Ankyrin repeat family A protein 2; structural geno | 99.97 | |
| 2rfm_A | 192 | Putative ankyrin repeat protein TV1425; ANK repeat | 99.97 | |
| 3v30_A | 172 | DNA-binding protein rfxank; structural genomics co | 99.97 | |
| 1ihb_A | 162 | P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit | 99.97 | |
| 1ihb_A | 162 | P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit | 99.97 | |
| 2y1l_E | 169 | Darpin-8.4; hydrolase-inhibitor complex, DEVD darp | 99.97 | |
| 2y1l_E | 169 | Darpin-8.4; hydrolase-inhibitor complex, DEVD darp | 99.97 | |
| 2vge_A | 229 | RELA-associated inhibitor; iaspp, nucleus, apoptos | 99.97 | |
| 3v31_A | 167 | Ankyrin repeat family A protein 2; structural geno | 99.97 | |
| 1awc_B | 153 | Protein (GA binding protein beta 1); complex (tran | 99.96 | |
| 1ycs_B | 239 | 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres | 99.96 | |
| 3f6q_A | 179 | Integrin-linked protein kinase; ILK, integrin-link | 99.96 | |
| 2aja_A | 376 | Ankyrin repeat family protein; NESG, Q5ZSV0, struc | 99.96 | |
| 1awc_B | 153 | Protein (GA binding protein beta 1); complex (tran | 99.96 | |
| 1bd8_A | 156 | P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr | 99.96 | |
| 3f6q_A | 179 | Integrin-linked protein kinase; ILK, integrin-link | 99.96 | |
| 1ycs_B | 239 | 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres | 99.96 | |
| 3twr_A | 165 | Tankyrase-2; ankyrin repeat, protein-protein inter | 99.96 | |
| 3twr_A | 165 | Tankyrase-2; ankyrin repeat, protein-protein inter | 99.96 | |
| 3t8k_A | 186 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 1bd8_A | 156 | P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr | 99.95 | |
| 2aja_A | 376 | Ankyrin repeat family protein; NESG, Q5ZSV0, struc | 99.95 | |
| 1bi7_B | 156 | P16INK4A, MTS1, multiple tumor suppressor; cyclin | 99.94 | |
| 1bi7_B | 156 | P16INK4A, MTS1, multiple tumor suppressor; cyclin | 99.94 | |
| 1d9s_A | 136 | Cyclin-dependent kinase 4 inhibitor B; helix-turn- | 99.94 | |
| 1d9s_A | 136 | Cyclin-dependent kinase 4 inhibitor B; helix-turn- | 99.94 | |
| 2jab_A | 136 | H10-2-G3; HER2, darpin, ankyrin repeat protein, me | 99.94 | |
| 1n0r_A | 126 | 4ANK, 4 ankyrin repeats; structural protein; 1.50A | 99.93 | |
| 3t8k_A | 186 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 2jab_A | 136 | H10-2-G3; HER2, darpin, ankyrin repeat protein, me | 99.92 | |
| 3ui2_A | 244 | Signal recognition particle 43 kDa protein, chlor; | 99.92 | |
| 1n0r_A | 126 | 4ANK, 4 ankyrin repeats; structural protein; 1.50A | 99.92 | |
| 3c5r_A | 137 | BARD-1, BRCA1-associated ring domain protein 1; an | 99.91 | |
| 3deo_A | 183 | Signal recognition particle 43 kDa protein; chloro | 99.91 | |
| 2b0o_E | 301 | UPLC1; arfgap, structural genomics, structural gen | 99.91 | |
| 3ui2_A | 244 | Signal recognition particle 43 kDa protein, chlor; | 99.91 | |
| 3deo_A | 183 | Signal recognition particle 43 kDa protein; chloro | 99.91 | |
| 3aaa_C | 123 | Myotrophin, protein V-1; actin capping protein, ba | 99.91 | |
| 3c5r_A | 137 | BARD-1, BRCA1-associated ring domain protein 1; an | 99.9 | |
| 2b0o_E | 301 | UPLC1; arfgap, structural genomics, structural gen | 99.9 | |
| 3ehr_A | 222 | Osteoclast-stimulating factor 1; beta barrel, heli | 99.9 | |
| 3ehr_A | 222 | Osteoclast-stimulating factor 1; beta barrel, heli | 99.89 | |
| 3aaa_C | 123 | Myotrophin, protein V-1; actin capping protein, ba | 99.89 | |
| 1n0q_A | 93 | 3ANK, 3 ankyrin repeats; structural protein; 1.26A | 99.88 | |
| 1dcq_A | 278 | PYK2-associated protein beta; zinc-binding module, | 99.87 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.87 | |
| 3jue_A | 368 | Arfgap with coiled-coil, ANK repeat and PH domain | 99.86 | |
| 3jue_A | 368 | Arfgap with coiled-coil, ANK repeat and PH domain | 99.86 | |
| 1n0q_A | 93 | 3ANK, 3 ankyrin repeats; structural protein; 1.26A | 99.85 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.84 | |
| 2l6b_A | 115 | NR1C; ankyrin, consensus, repeat protein, ising mo | 99.83 | |
| 1dcq_A | 278 | PYK2-associated protein beta; zinc-binding module, | 99.82 | |
| 2l6b_A | 115 | NR1C; ankyrin, consensus, repeat protein, ising mo | 99.82 | |
| 2zgd_A | 110 | 3 repeat synthetic ankyrin; ankyrin repeat, hydrox | 99.77 | |
| 2zgd_A | 110 | 3 repeat synthetic ankyrin; ankyrin repeat, hydrox | 99.73 |
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=313.23 Aligned_cols=287 Identities=19% Similarity=0.191 Sum_probs=173.6
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.++|++|+++|++....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHH
Confidence 3788888888888888888888776666666688888888 88888888888887 57777788888888888888
Q ss_pred HhCCHHHHHHHHHHhHHhhcCch---------------HHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhC
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDE---------------ELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTN 146 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~ 146 (303)
..|+.+++++|+++|++++..+. +....+.......+..+..|.||||+|+..|+.+++++|++.
T Consensus 89 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 168 (437)
T 1n11_A 89 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER 168 (437)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 88888888888888776543222 233333333344444555566666666666666666666655
Q ss_pred CcceeeecccccchhhhhhccchhH---------------------Hhhhh---hHHHHHHHHHHhccchhchhhhcCCC
Q 043678 147 NLILIFRDSDEKTNILFKFRHLDLF---------------------RIQTN---SIYAALPKLLEKKKNLIKETDQYGWT 202 (303)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~---~~~~~~~~ll~~~~~~~~~~~~~g~t 202 (303)
+++++..+..+.++++.+....... +++.+ ...++++.|++.+.. ++..+..|.|
T Consensus 169 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t 247 (437)
T 1n11_A 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVT 247 (437)
T ss_dssp TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCC
Confidence 5555555555555554443221111 01111 113445555544443 3444444444
Q ss_pred ccc---------------------------------cccc-----------------ccccCCcccHHhHHHhcCCHHHH
Q 043678 203 PIQ---------------------------------STSN-----------------IADKDRKMTALHLAAGKGDARTV 232 (303)
Q Consensus 203 ~l~---------------------------------~~~~-----------------~~~~~~~~t~L~~a~~~~~~~~v 232 (303)
||+ .++. ......|.||||+|+..|+.+++
T Consensus 248 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v 327 (437)
T 1n11_A 248 PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 327 (437)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred HHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHH
Confidence 444 3331 01123456666666666666666
Q ss_pred HHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCC
Q 043678 233 ERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPK 300 (303)
Q Consensus 233 ~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~ 300 (303)
++|+++|++ ++.+|..|+||||+|++.|+.+++++|++ .|++++.+|.+|+|||++|++.|+.
T Consensus 328 ~~Ll~~gad-~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~----~ga~~~~~~~~g~t~l~~A~~~g~~ 390 (437)
T 1n11_A 328 KFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLK----NGASPNEVSSDGTTPLAIAKRLGYI 390 (437)
T ss_dssp HHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCSSSCCHHHHHHHTTCH
T ss_pred HHHHhcCCC-CCCCCCCCCCHHHHHHHCChHHHHHHHHH----CcCCCCCCCCCCCCHHHHHHHcCcH
Confidence 666666666 35566666666666666666655555555 3555666666666666666666654
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=312.54 Aligned_cols=264 Identities=21% Similarity=0.203 Sum_probs=181.2
Q ss_pred HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCc
Q 043678 24 VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGD 103 (303)
Q Consensus 24 ~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~ 103 (303)
|++....+..|.||||+| +..|+.+++++|++ .|.+++..+..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 4 g~~~~~~~~~g~t~L~~A--a~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 77 (437)
T 1n11_A 4 GISGGGGGESGLTPLHVA--SFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77 (437)
T ss_dssp -----------CCHHHHH--HHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCC
T ss_pred CCCccccCCCCCCHHHHH--HHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Confidence 555556677799999999 99999999999999 799999999999999999999999999999999998765332
Q ss_pred ---------------hHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccc
Q 043678 104 ---------------EELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHL 168 (303)
Q Consensus 104 ---------------~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (303)
.++.+.+...++.++..+..|.||||+|+..|+.+++++|++.+.+....+..+.++++.+....
T Consensus 78 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g 157 (437)
T 1n11_A 78 KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG 157 (437)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcC
Confidence 24666677777888999999999999999999999999999999999888999999988876443
Q ss_pred hhHH---------------------hhhh---hHHHHHHHHHHhccchhchhhhcCCCcccccccc--------------
Q 043678 169 DLFR---------------------IQTN---SIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNI-------------- 210 (303)
Q Consensus 169 ~~~~---------------------~~~~---~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~-------------- 210 (303)
.... ++.+ ...+++++|+..+.. ++..+..|.|||++++..
T Consensus 158 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 236 (437)
T 1n11_A 158 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236 (437)
T ss_dssp CHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 3211 1222 226777888877766 666777888888876511
Q ss_pred ---cccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCC
Q 043678 211 ---ADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKG 287 (303)
Q Consensus 211 ---~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g 287 (303)
.....|.||||+|+..|+.+++++|+++|++ .+..+..|+||||+|++.|+.+++++|++. |++++.+|..|
T Consensus 237 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g 311 (437)
T 1n11_A 237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH----GVMVDATTRMG 311 (437)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCCCSSC
T ss_pred CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC----CccCCCCCCCC
Confidence 1123455666666666666666666666555 244555555555555555554444444442 33344444444
Q ss_pred CcHHHHHHhcCC
Q 043678 288 NTPLHVLAAVRP 299 (303)
Q Consensus 288 ~tpL~~A~~~~~ 299 (303)
+||||+|+..|+
T Consensus 312 ~t~L~~A~~~g~ 323 (437)
T 1n11_A 312 YTPLHVASHYGN 323 (437)
T ss_dssp CCHHHHHHHSSC
T ss_pred CCHHHHHHHcCc
Confidence 444444444443
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-44 Score=284.87 Aligned_cols=248 Identities=19% Similarity=0.192 Sum_probs=217.7
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhh-cccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLT-AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
.+||+.|+..|+.+++++|+++|++.... +..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLR----HGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHH
Confidence 47999999999999999999998876644 66699999999 99999999999999 7999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeee-------
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFR------- 153 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~------- 153 (303)
+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.|+++...
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~ 141 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSKGADV------------------NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ 141 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCT------------------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHH
T ss_pred HHcCCHHHHHHHHHcCCCC------------------CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHH
Confidence 9999999999999998874 478899999999999999999999999999988776
Q ss_pred ---cccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCC--
Q 043678 154 ---DSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGD-- 228 (303)
Q Consensus 154 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~-- 228 (303)
+..+.++++.+.... ..+++++|++..+..++..+..| .||||+|+..++
T Consensus 142 ~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~~~~~~~~~~~~g----------------~t~l~~a~~~~~~~ 196 (285)
T 1wdy_A 142 ERLRKGGATALMDAAEKG---------HVEVLKILLDEMGADVNACDNMG----------------RNALIHALLSSDDS 196 (285)
T ss_dssp HHTTCCCCCHHHHHHHHT---------CHHHHHHHHHTSCCCTTCCCTTS----------------CCHHHHHHHCSCTT
T ss_pred HhhccCCCcHHHHHHHcC---------CHHHHHHHHHhcCCCCCccCCCC----------------CCHHHHHHHccccc
Confidence 566777777766433 26899999988444466666555 466999999998
Q ss_pred --HHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 229 --ARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 229 --~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
.+++++|+++|++ ++.+|..|+||||+|++.|+.+++++|++. .|++++.+|..|+||||+|++.++.++
T Consensus 197 ~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l~~A~~~~~~~i 268 (285)
T 1wdy_A 197 DVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKLKKI 268 (285)
T ss_dssp THHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcHHHHHHHcCcHHH
Confidence 8999999999999 588999999999999999999999998884 578899999999999999999988664
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=289.56 Aligned_cols=265 Identities=20% Similarity=0.191 Sum_probs=223.0
Q ss_pred ChhHHHHHhcCCChhHHHHHHH-HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARD-VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
.++|+.|+..|+.+.|+.++.. +.+....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 98 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA--AGYNRVRIVQLLLQ----HGADVHAKDKGGLVPLHNA 98 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCccCCCCCcHHHHH
Confidence 3799999999999999999987 676667777799999999 99999999999999 7999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++.|+++...+..+.++
T Consensus 99 ~~~g~~~iv~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~ 160 (351)
T 3utm_A 99 CSYGHYEVTELLLKHGACVN------------------AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSA 160 (351)
T ss_dssp HHTTCHHHHHHHHHTTCCTT------------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHCCCHHHHHHHHHCCCCCC------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcc
Confidence 99999999999999988754 788999999999999999999999999999999999999998
Q ss_pred hhhhhccchhHHh------------hhhhHHHHHHHHHHhccchhchhhhcCCCcccccccc------------------
Q 043678 161 ILFKFRHLDLFRI------------QTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNI------------------ 210 (303)
Q Consensus 161 ~~~~~~~~~~~~~------------~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~------------------ 210 (303)
+..+......... ......+.+..++..... ....+..|.||+|.++..
T Consensus 161 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~ 239 (351)
T 3utm_A 161 VDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239 (351)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC
T ss_pred hHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC
Confidence 8776533221111 111114445555544433 334567788998876522
Q ss_pred --cccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCC
Q 043678 211 --ADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGN 288 (303)
Q Consensus 211 --~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~ 288 (303)
..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+
T Consensus 240 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~gad~~~~~~~g~ 314 (351)
T 3utm_A 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLS----YGSDPSIISLQGF 314 (351)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSC
T ss_pred cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH----cCCCCCCcCCCCC
Confidence 1235789999999999999999999999999 58999999999999999999999998888 5788999999999
Q ss_pred cHHHHHHh
Q 043678 289 TPLHVLAA 296 (303)
Q Consensus 289 tpL~~A~~ 296 (303)
||+++|..
T Consensus 315 tal~~a~~ 322 (351)
T 3utm_A 315 TAAQMGNE 322 (351)
T ss_dssp CHHHHSCH
T ss_pred ChhhhhhH
Confidence 99999854
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=272.31 Aligned_cols=214 Identities=17% Similarity=0.133 Sum_probs=165.4
Q ss_pred ChhHHHHHhcC-------------CChhHHHHHHHHHHhh-hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhh
Q 043678 2 DLNFFKAASAG-------------NSEPFKDMARDVIESL-LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLL 67 (303)
Q Consensus 2 ~~~L~~A~~~g-------------~~~~v~~ll~~~~~~~-~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~ 67 (303)
.||||.|+..| +.+++++|+++|.+.. ..+..|.||||+| +..|+.+++++|++ .|.+++
T Consensus 11 ~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~ 84 (253)
T 1yyh_A 11 FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA--ARYSRSDAAKRLLE----ASADAN 84 (253)
T ss_dssp -----------------------------------------CCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTT
T ss_pred CcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHH----cCCCCC
Confidence 48999999987 8999999999988765 3467799999999 99999999999999 799999
Q ss_pred ccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCC
Q 043678 68 QVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN 147 (303)
Q Consensus 68 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~ 147 (303)
.++..|.||||+|+..|+.+++++|++.++.. ++..+..|.||||+|+..++.+++++|++.|
T Consensus 85 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 147 (253)
T 1yyh_A 85 IQDNMGRTPLHAAVSADAQGVFQILIRNRATD-----------------LDARMHDGTTPLILAARLAVEGMLEDLINSH 147 (253)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC-----------------TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------ccccCCCCCcHHHHHHHcChHHHHHHHHHcC
Confidence 99999999999999999999999999987621 4578899999999999999999999988777
Q ss_pred cceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcC
Q 043678 148 LILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKG 227 (303)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~ 227 (303)
+++ +..+. .|.||||+|+..|
T Consensus 148 ~~~-------------------------------------------~~~d~----------------~g~t~L~~A~~~~ 168 (253)
T 1yyh_A 148 ADV-------------------------------------------NAVDD----------------LGKSALHWAAAVN 168 (253)
T ss_dssp CCT-------------------------------------------TCBCT----------------TSCBHHHHHHHHT
T ss_pred CCC-------------------------------------------CCcCC----------------CCCCHHHHHHHcC
Confidence 652 23333 3457799999999
Q ss_pred CHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 228 DARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 228 ~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+.+++++|+++|++ ++.+|..|+||||+|++.|+.+++++|++ .|++++.+|..|+||||+|++.|+.||
T Consensus 169 ~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~tpl~~A~~~g~~~i 238 (253)
T 1yyh_A 169 NVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLD----HFANRDITDHMDRLPRDIAQERMHHDI 238 (253)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHH----cCCCccccccCCCCHHHHHHHcCCHHH
Confidence 99999999999999 58899999999999999999988888888 478899999999999999999998775
|
| >4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-42 Score=280.18 Aligned_cols=258 Identities=16% Similarity=0.104 Sum_probs=220.2
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhc-ccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTA-KAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
+|+|+.||..|+.++|++|+++|++++..+ ..|.||||+| +..|+.+++++|++ .|++++.++..+.+|++.+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A--~~~g~~~iv~~Ll~----~ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLR----HGADPVLRKKNGATPFILA 99 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHH--HHcCCHHHHHHHHH----cCCchhhhccCCCchhHHH
Confidence 379999999999999999999999887554 4599999999 99999999999999 8999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeee-------
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFR------- 153 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~------- 153 (303)
+..+...++..+++.++++ +..|..|.||+|+|+..|+.+++++|++.|+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~------------------~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~ 161 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADV------------------NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ 161 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCT------------------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC---
T ss_pred HhcccchhhHHhhhccchh------------------hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccccc
Confidence 9999999999999988764 488999999999999999999999999988875543
Q ss_pred ---cccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCccccccc---------------------
Q 043678 154 ---DSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSN--------------------- 209 (303)
Q Consensus 154 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~--------------------- 209 (303)
+..|.++++.+.... ..++++.|+.+.+..++..+..|.|+++.++.
T Consensus 162 ~~~~~~g~T~L~~A~~~g---------~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~ 232 (337)
T 4g8k_A 162 ERLRKGGATALMDAAEKG---------HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 232 (337)
T ss_dssp --CTTCSCCHHHHHHHHT---------CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT
T ss_pred ccccCCCCcHHHHHHHCC---------CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC
Confidence 334566776665332 36899999987666689999999999875431
Q ss_pred ccccCCcccHHhHHHhcCCHHHHHHHhhc-CCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCC
Q 043678 210 IADKDRKMTALHLAAGKGDARTVERIISE-NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGN 288 (303)
Q Consensus 210 ~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~ 288 (303)
......|.||||+|+..|+.++++.|++. |++ ++.+|..|+||||+|++.|+.+++++|++ .|++++. .
T Consensus 233 n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~----~GAd~n~-----~ 302 (337)
T 4g8k_A 233 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCK----RGASTDC-----G 302 (337)
T ss_dssp TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHT----TSCSSTT-----C
T ss_pred CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCC-----C
Confidence 11235789999999999999999999986 566 69999999999999999999999999888 4676664 4
Q ss_pred cHHHHHHhcCCCCC
Q 043678 289 TPLHVLAAVRPKEF 302 (303)
Q Consensus 289 tpL~~A~~~~~~~i 302 (303)
+|||+|++.++.++
T Consensus 303 ~~L~~A~~~~~~~i 316 (337)
T 4g8k_A 303 DLVMTARRNYDHSL 316 (337)
T ss_dssp CHHHHHHHTTCHHH
T ss_pred CHHHHHHHcCCHHH
Confidence 69999999998664
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-42 Score=273.25 Aligned_cols=239 Identities=16% Similarity=0.112 Sum_probs=186.6
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHH-----------hhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccc
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIE-----------SLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVN 70 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~-----------~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~ 70 (303)
.|+||+|+..|+.+.+..++..+.. ....+..|.||||+| +..|+.+++++|++ .|.+++.++
T Consensus 16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~A--a~~g~~~~v~~Ll~----~g~~~~~~~ 89 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEA--AIHGHQLSLRNLIS----QGWAVNIIT 89 (285)
T ss_dssp --------------------------CCSEECCCCTTCSSSCCSCCHHHHH--HHTTCHHHHHHHHH----TTCCSCEEC
T ss_pred HHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHH--HHcCCHHHHHHHHH----CCCCCCCcC
Confidence 5899999999998888887665322 124566799999999 99999999999999 799999999
Q ss_pred cCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcce
Q 043678 71 AKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLIL 150 (303)
Q Consensus 71 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~ 150 (303)
..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.++++
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 151 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQV------------------NGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCS------------------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCCC------------------CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC
Confidence 99999999999999999999999998774 488999999999999999999999999999887
Q ss_pred eeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHH
Q 043678 151 IFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDAR 230 (303)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~ 230 (303)
...+ .+.++++.+..... .+++++|++.+.+ ++..+.. |.||||+|+..|+.+
T Consensus 152 ~~~~-~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~-~~~~d~~----------------g~t~L~~A~~~~~~~ 204 (285)
T 3d9h_A 152 QPES-DLASPIHEAARRGH---------VECVNSLIAYGGN-IDHKISH----------------LGTPLYLACENQQRA 204 (285)
T ss_dssp SCSC-TTSCHHHHHHHHTC---------HHHHHHHHHTTCC-TTCCBTT----------------TBCHHHHHHHTTCHH
T ss_pred CCCC-CCCCHHHHHHHcCC---------HHHHHHHHHCCCC-CCCcCCC----------------CCCHHHHHHHcCcHH
Confidence 6544 47888877764433 6889999988776 5555544 456699999999999
Q ss_pred HHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhc
Q 043678 231 TVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAV 297 (303)
Q Consensus 231 ~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~ 297 (303)
++++|++.|+++ + .+..|.||||+|++.++.+++++|++ .|++++.+|..|+||||+|+..
T Consensus 205 ~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~----~gad~~~~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 205 CVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELACLLMD----FGADTQAKNAEGKRPVELVPPE 265 (285)
T ss_dssp HHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCGGGGSCTT
T ss_pred HHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHhcCc
Confidence 999999999995 6 48999999999999999999988888 4888999999999999999843
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=285.42 Aligned_cols=259 Identities=16% Similarity=0.168 Sum_probs=215.6
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHH----HHHhCchhhhccccCCCcHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEE----ILEKCPALLLQVNAKGDTPL 77 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~----~~~~~~~~~~~~~~~g~tpL 77 (303)
.||||.|+..| .+++++|++.+++. .++..|.||||+| +..|+.+++++|+. .+...|.+++.+|..|.|||
T Consensus 95 ~t~L~~Aa~~~-~~~~~~L~~~~~n~-~d~~~g~t~Lh~A--a~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL 170 (373)
T 2fo1_E 95 PIKLHTEAAGS-YAITEPITRESVNI-IDPRHNRTVLHWI--ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL 170 (373)
T ss_dssp CCHHHHHHHSS-SCCCSCCSTTTTTT-CCCSSCCCHHHHH--HCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH
T ss_pred ccHHHHHhcCC-chHHHHhccccccc-cCCcCCCCHHHHH--HHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHH
Confidence 47999999955 58888888765542 3335699999999 99999999998873 22348999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCC---cceeeec
Q 043678 78 HLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN---LILIFRD 154 (303)
Q Consensus 78 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~---~~~~~~~ 154 (303)
|+|+..|+.++|++|+++|+++ +..+..|.||||+|+..|+.+++++|++.+ .++...+
T Consensus 171 ~~A~~~g~~~iv~~Ll~~ga~~------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d 232 (373)
T 2fo1_E 171 MLAVLARRRRLVAYLMKAGADP------------------TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232 (373)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCS------------------CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCC
T ss_pred HHHHHcChHHHHHHHHHCCCCC------------------cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcC
Confidence 9999999999999999999875 478899999999999999999999999887 7889999
Q ss_pred ccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHH
Q 043678 155 SDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVER 234 (303)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~ 234 (303)
..|.++++.+..... ....+++++|++.+.+ ++..+.. .....+..|.||||+|+..|+.+++++
T Consensus 233 ~~g~t~L~~A~~~~~------~~~~~~v~~Ll~~g~~-~~~~~~~--------~~~~~d~~g~t~Lh~A~~~g~~~~v~~ 297 (373)
T 2fo1_E 233 RNGMTALMIVAHNEG------RDQVASAKLLVEKGAK-VDYDGAA--------RKDSEKYKGRTALHYAAQVSNMPIVKY 297 (373)
T ss_dssp TTSCCHHHHHHHSCS------TTHHHHHHHHHHHTCC-SSCCSGG--------GTSSSSCCCCCTHHHHHSSCCHHHHHH
T ss_pred CCCCCHHHHHHHhCC------cchHHHHHHHHHCCCC-ccccccc--------ccCcccccCCCHHHHHHHhCCHHHHHH
Confidence 999999988765431 1136889999998876 3321100 001112357788999999999999999
Q ss_pred HhhcC-CcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 235 IISEN-PKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 235 Ll~~g-~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
|++++ ++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|++.|+.++
T Consensus 298 Ll~~~~~~-~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~----~gad~~~~d~~g~t~l~~A~~~g~~~i 361 (373)
T 2fo1_E 298 LVGEKGSN-KDKQDEDGKTPIMLAAQEGRIEVVMYLIQ----QGASVEAVDATDHTARQLAQANNHHNI 361 (373)
T ss_dssp HHHHSCCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSSCCCSSSCCHHHHHHHTTCHHH
T ss_pred HHHhcCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccCCCCCCCCHHHHHHHcCCHHH
Confidence 99987 66 69999999999999999999999999888 588899999999999999999998764
|
| >4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-42 Score=270.93 Aligned_cols=209 Identities=19% Similarity=0.168 Sum_probs=147.0
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHh--------hhhcccCCchhhhhhhhcccch-hhHHHHHHHHHhCchhhhccccCC
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIES--------LLTAKAKNTILHINIISSEREN-VSTKFVEEILEKCPALLLQVNAKG 73 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~--------~~~~~~g~t~Lh~A~~~~~~~~-~~~~~Ll~~~~~~~~~~~~~~~~g 73 (303)
+||+.||..|+.++|++|++.+.+. ...+..|.||||+| +..+.. +++++|++ .|++++.+|.+|
T Consensus 13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a--~~~~~~~~~v~~Ll~----~Gadvn~~d~~G 86 (269)
T 4b93_B 13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQC--PKCAPAQKRLAKVPA----SGLGVNVTSQDG 86 (269)
T ss_dssp HHHHHHHHTTCHHHHHHHHTCC----------------------------------------------CCCCTTCCCTTS
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHH--HHhCCHHHHHHHHHH----CCCCCCCcCCCC
Confidence 6899999999999999999985532 23455689999999 877765 46777877 899999999999
Q ss_pred CcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeee
Q 043678 74 DTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFR 153 (303)
Q Consensus 74 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~ 153 (303)
.||||+|+..|+.+++++|++.|+++. ..+..|.||+++|+..++.+++++|++.|++++..
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~------------------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~ 148 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHGANAG------------------ARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK 148 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTCCTT------------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCcC------------------ccCCCCCCccccccccChHHHHHHHHHCCCCCCCC
Confidence 999999999999999999999998754 78899999999999999999999988887764433
Q ss_pred cccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHH
Q 043678 154 DSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVE 233 (303)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~ 233 (303)
+. .|.||||+|+..|+.++++
T Consensus 149 d~-----------------------------------------------------------~g~TpL~~A~~~g~~~~v~ 169 (269)
T 4b93_B 149 DL-----------------------------------------------------------SGNTPLIYACSGGHHELVA 169 (269)
T ss_dssp CT-----------------------------------------------------------TCCCHHHHHHHTTCGGGHH
T ss_pred CC-----------------------------------------------------------CCCCHHHHHHHCCCHHHHH
Confidence 33 3345577777777777777
Q ss_pred HHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCC
Q 043678 234 RIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRP 299 (303)
Q Consensus 234 ~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~ 299 (303)
+|+++|++ ++.++..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|++++.
T Consensus 170 ~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~----~Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 170 LLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLL----HGASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred HHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHhCCc
Confidence 77777777 47777777777777777777777777766 467777777777777777776553
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=263.42 Aligned_cols=214 Identities=21% Similarity=0.233 Sum_probs=185.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhh-hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCc--hhhhc-cccCCCcHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESL-LTAKAKNTILHINIISSERENVSTKFVEEILEKCP--ALLLQ-VNAKGDTPL 77 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~--~~~~~-~~~~g~tpL 77 (303)
+||||.|+..|+.+++++|++.+.+.. ..+..|.||||+| +..|+.+++++|++ .+ .+++. .+..|.|||
T Consensus 3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~g~t~L 76 (228)
T 2dzn_A 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS--VSFQAHEITSFLLS----KMENVNLDDYPDDSGWTPF 76 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TCTTCCGGGCCCTTSCCHH
T ss_pred ccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHH--HHcCCHHHHHHHHh----ccccccccccCCCCCCCHH
Confidence 589999999999999999999987654 3677799999999 99999999999999 66 55666 788999999
Q ss_pred HHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccc
Q 043678 78 HLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDE 157 (303)
Q Consensus 78 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~ 157 (303)
|+|+..|+.+++++|+++|...+ ++..+..|.||||+|+..++.+++++|++.|+++
T Consensus 77 ~~A~~~~~~~~~~~Ll~~g~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------- 133 (228)
T 2dzn_A 77 HIACSVGNLEVVKSLYDRPLKPD----------------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV------- 133 (228)
T ss_dssp HHHHHHCCHHHHHHHHSSSSCCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-------
T ss_pred HHHHHcCCHHHHHHHHhCCCCcc----------------cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-------
Confidence 99999999999999999983322 5578899999999999999999999988777653
Q ss_pred cchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhh
Q 043678 158 KTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS 237 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~ 237 (303)
+..+. .|.||||+|+..|+.+++++|++
T Consensus 134 ------------------------------------~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 134 ------------------------------------RIKDK----------------FNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp ------------------------------------CCCCT----------------TSCCHHHHHHHTTCHHHHHHHHT
T ss_pred ------------------------------------cccCC----------------CCCCHHHHHHHcCCHHHHHHHHh
Confidence 22333 35577999999999999999999
Q ss_pred cC-CcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCC
Q 043678 238 EN-PKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPK 300 (303)
Q Consensus 238 ~g-~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~ 300 (303)
.| ++ ++.+|..|+||||+|+..++.+++++|++. .|++++.+|..|+||||+|++.+..
T Consensus 162 ~g~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---~ga~~~~~~~~g~t~l~~A~~~~~~ 221 (228)
T 2dzn_A 162 LGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVEK---YGAEYDLVDNKGAKAEDVALNEQVK 221 (228)
T ss_dssp TTCCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHH---HCCCSCCBCTTSCBGGGGCSSTTHH
T ss_pred cCccc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCcHHHHHHHHHHH
Confidence 99 66 689999999999999999999999999832 6889999999999999999876543
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=263.34 Aligned_cols=211 Identities=23% Similarity=0.216 Sum_probs=168.7
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|+++|++....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 12 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEA--AENNHLEAVKYLIK----AGALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHTTCHHHHHHHHT----TTCCCCCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHH--HHhCCHHHHHHHHh----CCCCCCCCCCCCCcHHHHHH
Confidence 3678888888888888888887776666666678888888 77788888888877 67777777777888888888
Q ss_pred HhCCHHHHHHHHHHh-HHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 82 KFGHFDIVRVLIERA-KLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
..|+.+++++|++.| .+ ++..+..|.||||+|+..++.+++++|++.|++
T Consensus 86 ~~~~~~~~~~Ll~~~~~~------------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------- 136 (237)
T 3b7b_A 86 KKGHYEVVQYLLSNGQMD------------------VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD----------- 136 (237)
T ss_dssp HTTCHHHHHHHHTTTCCC------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred HcCCHHHHHHHHhCCCCC------------------cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----------
Confidence 888888888888776 33 346677778888888888887777776666554
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
++..+. .|.||||+|+..|+.+++++|+++|+
T Consensus 137 --------------------------------~~~~~~----------------~g~t~L~~A~~~~~~~~~~~Ll~~g~ 168 (237)
T 3b7b_A 137 --------------------------------INIRDN----------------EENICLHWAAFSGCVDIAEILLAAKC 168 (237)
T ss_dssp --------------------------------TTCCCT----------------TSCCHHHHHHHHCCHHHHHHHHTTTC
T ss_pred --------------------------------CCccCC----------------CCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 233333 45577999999999999999999999
Q ss_pred cccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCC
Q 043678 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPK 300 (303)
Q Consensus 241 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~ 300 (303)
+ ++..|..|.||||+|++.++.+++++|++ .|++++.+|..|+||||+|+..++.
T Consensus 169 ~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~gad~~~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 169 D-LHAVNIHGDSPLHIAARENRYDCVVLFLS----RDSDVTLKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp C-TTCCCTTCCCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTSCCHHHHSCTTCHH
T ss_pred C-CCCcCCCCCCHHHHHHHhCCHhHHHHHHH----cCCCCCccCCCCCCHHHHHHHHHHH
Confidence 9 58899999999999999999988888887 5788999999999999999988754
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=270.49 Aligned_cols=230 Identities=20% Similarity=0.145 Sum_probs=175.7
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHH---hhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIE---SLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLH 78 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~---~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~ 78 (303)
.||||.|+..|+.++|++|++.+.+ ....+..|.||||+| +..|+.+++++|++ .|++++.++..|.||||
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~ga~~~~~~~~g~tpL~ 83 (282)
T 1oy3_D 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA--AILGEASTVEKLYA----AGAGVLVAERGGHTALH 83 (282)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHH--HHHTCHHHHHHHHH----TTCCSSCCCTTSCCHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHH
Confidence 4899999999999999999999876 456677799999999 99999999999999 79999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHhHHhhcCchH-----------------------------HHHHHHHhhhhhccccCCCccHHH
Q 043678 79 LAAKFGHFDIVRVLIERAKLAQRGDEE-----------------------------LENRIEAFRQMIRMVNNEKNTALH 129 (303)
Q Consensus 79 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~t~l~ 129 (303)
+|+..|+.+++++|+++|+........ ...........++..+..|.||||
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~ 163 (282)
T 1oy3_D 84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163 (282)
T ss_dssp HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence 999999999999999987653211110 000011122446778888889999
Q ss_pred HHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCccccccc
Q 043678 130 EAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSN 209 (303)
Q Consensus 130 ~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~ 209 (303)
+|+..|+.+++++|++.|+++ +..+..
T Consensus 164 ~A~~~g~~~~v~~Ll~~g~~~-------------------------------------------~~~~~~---------- 190 (282)
T 1oy3_D 164 VAVIHKDAEMVRLLRDAGADL-------------------------------------------NKPEPT---------- 190 (282)
T ss_dssp HHHHTTCHHHHHHHHHHTCCT-------------------------------------------TCCCTT----------
T ss_pred HHHHcCCHHHHHHHHHcCCCC-------------------------------------------CCCCCC----------
Confidence 999888888888877666542 222211
Q ss_pred ccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCc
Q 043678 210 IADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNT 289 (303)
Q Consensus 210 ~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~t 289 (303)
.|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++ .|++++.+|..|.|
T Consensus 191 -----~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t 260 (282)
T 1oy3_D 191 -----CGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRA----HGAPEPEDGGDKLS 260 (282)
T ss_dssp -----TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHH----TTCCCCCCC-----
T ss_pred -----CCcCHHHHHHHcCCHHHHHHHHHcCCC-CcccccCCCCHHHHHHHcCCcHHHHHHHH----cCCCcCcCCCcccc
Confidence 356779999999999999999999999 58999999999999999999988888887 58889999999999
Q ss_pred HHHHHHhcCCC
Q 043678 290 PLHVLAAVRPK 300 (303)
Q Consensus 290 pL~~A~~~~~~ 300 (303)
||++|......
T Consensus 261 pl~~a~~~~~~ 271 (282)
T 1oy3_D 261 PCSSSGSDSDS 271 (282)
T ss_dssp -----------
T ss_pred cccccCCcccc
Confidence 99999876543
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=262.63 Aligned_cols=212 Identities=22% Similarity=0.227 Sum_probs=185.1
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHH-hhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIE-SLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
++||+.|+..|+.+.++++++.+.. ....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 80 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA--CSAGHTEIVEFLLQ----LGVPVNDKDDAGWSPLHIA 80 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH--HHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH--HHcCcHHHHHHHHH----hCCCCCCcCCCCCCHHHHH
Confidence 5799999999999999999998543 335667799999999 99999999999998 7999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|+++|+++ +.++..|.||||+|+..++.+++++|++.|+++
T Consensus 81 ~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---------- 132 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAHV------------------NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP---------- 132 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----------
T ss_pred HHcCHHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------
Confidence 9999999999999998774 478899999999999999999999988776642
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
+..+. .|.||||+|+..|+.+++++|+++|+
T Consensus 133 ---------------------------------~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~g~ 163 (231)
T 3aji_A 133 ---------------------------------DAKDH----------------YDATAMHRAAAKGNLKMVHILLFYKA 163 (231)
T ss_dssp ---------------------------------TCCCT----------------TSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ---------------------------------CCcCC----------------CCCcHHHHHHHcCCHHHHHHHHhcCC
Confidence 22222 35577999999999999999999999
Q ss_pred cccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCC
Q 043678 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKE 301 (303)
Q Consensus 241 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~ 301 (303)
+ ++.+|..|+||||+|+..++.+++++|++ .|++++.+|..|+||||+|++.++.+
T Consensus 164 ~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~~~ 219 (231)
T 3aji_A 164 S-TNIQDTEGNTPLHLACDEERVEEAKFLVT----QGASIYIENKEEKTPLQVAKGGLGLI 219 (231)
T ss_dssp C-SCCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHSCHHHHHH
T ss_pred C-ccccCCCCCCHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHhhHHHH
Confidence 9 58899999999999999999988888887 47889999999999999998776543
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=265.36 Aligned_cols=217 Identities=19% Similarity=0.162 Sum_probs=162.1
Q ss_pred ChhHHHHHhcCCChhHHHHHHH----HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARD----VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPL 77 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL 77 (303)
.||||.||..|+.+++++|++. +.+....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.|||
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l 83 (241)
T 1k1a_A 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA--VITTLPSVVRLLVT----AGASPMALDRHGQTAA 83 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHH--HHcCCHHHHHHHHH----cCCCccccCCCCCCHH
Confidence 3677777777777777777762 444444555577777777 77777777777776 6677777777777777
Q ss_pred HHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccc
Q 043678 78 HLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDE 157 (303)
Q Consensus 78 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~ 157 (303)
|+|+..|+.+++++|++.++... ..++..+..|.||||+|+..++.+++++|++.|++
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~~--------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------- 141 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPGT--------------LDLEARNYDGLTALHVAVNTECQETVQLLLERGAD-------- 141 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTS--------------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--------
T ss_pred HHHHHcCCHHHHHHHHHcCCCcc--------------ccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC--------
Confidence 77777777777777777665210 01345666777777777777777777766665543
Q ss_pred cchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhh-hcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHh
Q 043678 158 KTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETD-QYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERII 236 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll 236 (303)
++..+ . .|.||||+|+..|+.+++++|+
T Consensus 142 -----------------------------------~~~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll 170 (241)
T 1k1a_A 142 -----------------------------------IDAVDIK----------------SGRSPLIHAVENNSLSMVQLLL 170 (241)
T ss_dssp -----------------------------------TTCCCTT----------------TCCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------------------ccccccc----------------CCCcHHHHHHHcCCHHHHHHHH
Confidence 22222 2 4567799999999999999999
Q ss_pred hcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 237 SENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 237 ~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.++
T Consensus 171 ~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~tpl~~A~~~~~~~i 231 (241)
T 1k1a_A 171 QHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVR----SGADSSLKNCHNDTPLMVARSRRVIDI 231 (241)
T ss_dssp HTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCTTTTCSSHHHHHH
T ss_pred HcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHh----cCCCCCCcCCCCCCHHHHHHhcCcHHH
Confidence 99999 58999999999999999999999998888 578899999999999999999887654
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=274.73 Aligned_cols=234 Identities=23% Similarity=0.224 Sum_probs=194.8
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.|||+.||..|+.++|++|+++|++.+..+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 41 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~ga~~~~~~~~g~tpL~~A~ 114 (299)
T 1s70_B 41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA--CIDDNVDMVKFLVE----NGANINQPDNEGWIPLHAAA 114 (299)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH--HHcCCHHHHHHHHH----CCCCCCCCCCCCCcHHHHHH
Confidence 3789999999999999999999988777787899999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHh-hCCcceeeecccccch
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKK-TNNLILIFRDSDEKTN 160 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~-~~~~~~~~~~~~~~~~ 160 (303)
..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++++ ..+.++......+..
T Consensus 115 ~~g~~~~v~~Ll~~g~~~~------------------~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~- 175 (299)
T 1s70_B 115 SCGYLDIAEYLISQGAHVG------------------AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER- 175 (299)
T ss_dssp HHTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHH-
T ss_pred HcCCHHHHHHHHhCCCCCC------------------CcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhh-
Confidence 9999999999999988754 78899999999999999999999855 444443322221111
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
.....+..++..+.......+. .|.||||+|+..|+.+++++|+++|+
T Consensus 176 ----------------~~~~~~~~~l~~~~~~~~~~~~----------------~g~t~L~~A~~~g~~~~v~~Ll~~g~ 223 (299)
T 1s70_B 176 ----------------IMLRDARQWLNSGHINDVRHAK----------------SGGTALHVAAAKGYTEVLKLLIQARY 223 (299)
T ss_dssp ----------------HHHHHHHHHHHHTCCCCCCCTT----------------TCCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred ----------------HHHHHHHHHHhccCcchhhhcC----------------CCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence 1123344455444432222222 56678999999999999999999999
Q ss_pred cccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhc
Q 043678 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAV 297 (303)
Q Consensus 241 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~ 297 (303)
+ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|++.
T Consensus 224 d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~----~gad~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 224 D-VNIKDYDGWTPLHAAAHWGKEEACRILVE----NLCDMEAVNKVGQTAFDVADED 275 (299)
T ss_dssp C-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCTTTSCCSG
T ss_pred C-CCCcCCCCCcHHHHHHhcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHH
Confidence 9 58999999999999999999999999888 5788999999999999999764
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=275.05 Aligned_cols=264 Identities=17% Similarity=0.133 Sum_probs=211.7
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.++|++|+++|++....+..|.||||+| +..|+.+++++|++ .|.+ ..+..|.||||+|+
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~--~~~~~g~t~L~~A~ 92 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA--CKFGCVDTAKYLAS----VGEV--HSLWHGQKPIHLAV 92 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHHCCHHHHHHHHH----HCCC--CCCBTTBCHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHH--HHcCCHHHHHHHHH----CCCC--ccccCCCCHHHHHH
Confidence 3799999999999999999999988888888899999999 99999999999999 4653 33458999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHH---HhhhhhccccCCCccHHHHHHhcC--cHHHHHhHhhCCcceeeeccc
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIE---AFRQMIRMVNNEKNTALHEAVSHG--NVDLFKLKKTNNLILIFRDSD 156 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~t~l~~A~~~~--~~~~v~~L~~~~~~~~~~~~~ 156 (303)
..|+.+++++|++.+.........+..... .....++..+..|.||||+|+..| +.+++++|++.|++++..+..
T Consensus 93 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~ 172 (364)
T 3ljn_A 93 MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA 172 (364)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT
T ss_pred HcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC
Confidence 999999999999995442210000000000 000112337889999999999999 999999999999999999999
Q ss_pred ccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch----hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHH
Q 043678 157 EKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL----IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTV 232 (303)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v 232 (303)
|.++++++..... .+++++|++.+.+. ++..+.. |.||||+|+..|+.+++
T Consensus 173 g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~~~~~~----------------g~t~L~~A~~~g~~~~v 227 (364)
T 3ljn_A 173 DETPLMRAMEFRN---------REALDLMMDTVPSKSSLRLDYANKQ----------------GNSHLHWAILINWEDVA 227 (364)
T ss_dssp SCCHHHHHHHTTC---------HHHHHHHHHHCSCSSSCCTTCCCTT----------------CCCTTHHHHTTTCHHHH
T ss_pred CCCHHHHHHHcCC---------HHHHHHHHhcccccccccccccCCC----------------CCcHHHHHHHcCCHHHH
Confidence 9999998875543 68999999987662 4444444 45669999999999999
Q ss_pred HHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccch--------hcccccCCCCCCcHHHHHHhcCC
Q 043678 233 ERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLA--------RSLIDEGDAKGNTPLHVLAAVRP 299 (303)
Q Consensus 233 ~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~--------~~~~~~~d~~g~tpL~~A~~~~~ 299 (303)
++|+++|++ ++.+|..|+||||+|++.|+.+++++|++.+... +......+..|+||+++|+..++
T Consensus 228 ~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~ 301 (364)
T 3ljn_A 228 MRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPS 301 (364)
T ss_dssp HHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHH
T ss_pred HHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccC
Confidence 999999999 5899999999999999999999999999975332 11222357889999998877654
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-39 Score=256.85 Aligned_cols=243 Identities=18% Similarity=0.140 Sum_probs=207.0
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|+++|++....+..|.||||+| +..|+.+++++|++ .|.+++..+..|.||||+|+
T Consensus 40 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 113 (285)
T 1wdy_A 40 WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA--AIAGSVKLLKLFLS----KGADVNECDFYGFTAFMEAA 113 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHHTCHHHHHHHHH----TTCCTTCBCTTCCBHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCccCcccCCHHHHHH
Confidence 4799999999999999999999988877788899999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhC-Ccceeeecccccch
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTN-NLILIFRDSDEKTN 160 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~-~~~~~~~~~~~~~~ 160 (303)
..|+.+++++|+++|++++..... .......+..|.||||+|+..|+.+++++|++. +.+++..+..|.++
T Consensus 114 ~~~~~~~~~~Ll~~g~~~~~~~~~--------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~ 185 (285)
T 1wdy_A 114 VYGKVKALKFLYKRGANVNLRRKT--------KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185 (285)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCCC--------CHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCH
T ss_pred HhCCHHHHHHHHHhCCCccccccc--------HHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCH
Confidence 999999999999999876532210 011223478899999999999999999999876 99999999999999
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhh-cC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS-EN 239 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~-~g 239 (303)
++.+....... ...+++++|++.+.+ ++..+..| .||||+|+..|+.+++++|++ .|
T Consensus 186 l~~a~~~~~~~-----~~~~i~~~Ll~~g~~-~~~~~~~g----------------~t~L~~A~~~~~~~~v~~Ll~~~g 243 (285)
T 1wdy_A 186 LIHALLSSDDS-----DVEAITHLLLDHGAD-VNVRGERG----------------KTPLILAVEKKHLGLVQRLLEQEH 243 (285)
T ss_dssp HHHHHHCSCTT-----THHHHHHHHHHTTCC-SSCCCTTS----------------CCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred HHHHHHccccc-----hHHHHHHHHHHcCCC-CCCcCCCC----------------CcHHHHHHHcCCHHHHHHHHhccC
Confidence 98887554321 125788888888766 55555544 566999999999999999999 78
Q ss_pred CcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCC
Q 043678 240 PKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDA 285 (303)
Q Consensus 240 ~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~ 285 (303)
++ ++.+|..|+||||+|++.++.+++++|++ .|++++.+|.
T Consensus 244 ~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~----~Ga~~~~~d~ 284 (285)
T 1wdy_A 244 IE-INDTDSDGKTALLLAVELKLKKIAELLCK----RGASTDCGDL 284 (285)
T ss_dssp CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH----HSSCSCCSSC
T ss_pred CC-ccccCCCCCcHHHHHHHcCcHHHHHHHHH----cCCCCCcccc
Confidence 88 58999999999999999999988888888 5788888774
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=266.80 Aligned_cols=246 Identities=18% Similarity=0.148 Sum_probs=215.0
Q ss_pred HHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHH
Q 043678 19 DMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKL 98 (303)
Q Consensus 19 ~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 98 (303)
.+...+++....+..+.++||.| +..|+.+.++.|+. ..+.+++.++..|.||||+|+..|+.+++++|+++|++
T Consensus 9 ~l~~~~~~~~~~~~~~~~~L~~A--~~~g~~~~v~~ll~---~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 83 (351)
T 3utm_A 9 DLADPSAKAVLTGEYKKDELLEA--ARSGNEEKLMALLT---PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83 (351)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH--HHHTCHHHHHHHCC---TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hccCCceeeeeeccccchhHHHH--HHcCCHHHHHHHHH---hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 44555666666777799999999 99999999998876 36888999999999999999999999999999999987
Q ss_pred hhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhH
Q 043678 99 AQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSI 178 (303)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (303)
+ +..|..|.||||+|+..|+.+++++|++.|++++..+..|.++++.+.....
T Consensus 84 ~------------------~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--------- 136 (351)
T 3utm_A 84 V------------------HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR--------- 136 (351)
T ss_dssp T------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC---------
T ss_pred C------------------CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC---------
Confidence 5 4888999999999999999999999999999999999999999998875443
Q ss_pred HHHHHHHHHhccchhchhhhcCCCccccccc--------------------------------------ccccCCcccHH
Q 043678 179 YAALPKLLEKKKNLIKETDQYGWTPIQSTSN--------------------------------------IADKDRKMTAL 220 (303)
Q Consensus 179 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~--------------------------------------~~~~~~~~t~L 220 (303)
.+++++|++.+.+ ++..+..|.||++.+.. ......+.|||
T Consensus 137 ~~~v~~Ll~~g~~-~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L 215 (351)
T 3utm_A 137 VEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL 215 (351)
T ss_dssp HHHHHHHHHTTCC-TTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHH
T ss_pred HHHHHHHHHcCCC-CccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHH
Confidence 6899999999877 78888999999887642 12345789999
Q ss_pred hHHHhc---CCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhc
Q 043678 221 HLAAGK---GDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAV 297 (303)
Q Consensus 221 ~~a~~~---~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~ 297 (303)
|+|+.. +..+++++|++.|++ ++.+|..|+||||+|++.|+.+++++|++ .|++++.+|..|+||||+|++.
T Consensus 216 ~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~n~~d~~g~t~L~~A~~~ 290 (351)
T 3utm_A 216 HCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHK----HGAKMNALDSLGQTALHRAALA 290 (351)
T ss_dssp HHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHc
Confidence 999999 568999999999999 58999999999999999999999998887 5788999999999999999999
Q ss_pred CCCCC
Q 043678 298 RPKEF 302 (303)
Q Consensus 298 ~~~~i 302 (303)
|+.++
T Consensus 291 ~~~~~ 295 (351)
T 3utm_A 291 GHLQT 295 (351)
T ss_dssp TCHHH
T ss_pred CcHHH
Confidence 98654
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-39 Score=264.90 Aligned_cols=224 Identities=15% Similarity=0.152 Sum_probs=191.7
Q ss_pred HHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCch
Q 043678 25 IESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDE 104 (303)
Q Consensus 25 ~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 104 (303)
++....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+..|+.+++++|+++|++.
T Consensus 11 ~~~~~~d~~g~t~L~~A--a~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----- 79 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVA--ARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH----- 79 (364)
T ss_dssp -----CCHHHHHHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----
T ss_pred CCccccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----
Confidence 33445566699999999 99999999999999 79999999999999999999999999999999999753
Q ss_pred HHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhC----Ccceee-----------------ecccccchhhh
Q 043678 105 ELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTN----NLILIF-----------------RDSDEKTNILF 163 (303)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~----~~~~~~-----------------~~~~~~~~~~~ 163 (303)
.+..|.||||+|+..|+.+++++|++. +.++.. .+..+.++++.
T Consensus 80 ---------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 144 (364)
T 3ljn_A 80 ---------------SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHW 144 (364)
T ss_dssp ---------------CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHH
T ss_pred ---------------cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHH
Confidence 346899999999999999999999977 666555 88889999988
Q ss_pred hhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcc-
Q 043678 164 KFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKC- 242 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~- 242 (303)
+..... ...+++++|++.+.+ ++..+..| .||||+|+..|+.+++++|+++|++.
T Consensus 145 A~~~g~-------~~~~~v~~Ll~~ga~-~~~~d~~g----------------~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 200 (364)
T 3ljn_A 145 CVGLGP-------EYLEMIKILVQLGAS-PTAKDKAD----------------ETPLMRAMEFRNREALDLMMDTVPSKS 200 (364)
T ss_dssp HHHSCG-------GGHHHHHHHHHHTCC-TTCCCTTS----------------CCHHHHHHHTTCHHHHHHHHHHCSCSS
T ss_pred HHHcCC-------chHHHHHHHHHcCCC-CcccCCCC----------------CCHHHHHHHcCCHHHHHHHHhcccccc
Confidence 875541 136899999999776 56666555 46699999999999999999999882
Q ss_pred ---cccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 243 ---YELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 243 ---~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
++..|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|++.|+.++
T Consensus 201 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~gad~~~~d~~g~tpL~~A~~~g~~~~ 259 (364)
T 3ljn_A 201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVE----MGIDVNMEDNEHTVPLYLSVRAAMVLL 259 (364)
T ss_dssp SCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT----TTCCTTCCCTTSCCHHHHHHHTCCHHH
T ss_pred cccccccCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHhChHHH
Confidence 48899999999999999999999999888 588899999999999999999998654
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-39 Score=247.50 Aligned_cols=204 Identities=17% Similarity=0.110 Sum_probs=154.4
Q ss_pred cCCChhHHHHHHHHHHhhh-hcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHH
Q 043678 11 AGNSEPFKDMARDVIESLL-TAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIV 89 (303)
Q Consensus 11 ~g~~~~v~~ll~~~~~~~~-~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v 89 (303)
.|+.+++++|+++|.+... .+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+..|+.+++
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v 74 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLA--ARYSRSDAAKRLLE----ASADANIQDNMGRTPLHAAVSADAQGVF 74 (223)
T ss_dssp ----CCEETTEETTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CCcHHHHHHHHHcCCCcccccCCCCCchHHHH--HHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence 3788999999999887653 366799999999 99999999999998 7999999999999999999999999999
Q ss_pred HHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccch
Q 043678 90 RVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLD 169 (303)
Q Consensus 90 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (303)
++|++.++.. ++..+..|.||||+|+..++.+++++|++.+++++..+..
T Consensus 75 ~~Ll~~~~~~-----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~------------- 124 (223)
T 2f8y_A 75 QILIRNRATD-----------------LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL------------- 124 (223)
T ss_dssp HHHHHBTTSC-----------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTT-------------
T ss_pred HHHHHcCCCC-----------------cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCC-------------
Confidence 9999987621 4577889999999999999999999988887764443333
Q ss_pred hHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCC
Q 043678 170 LFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNR 249 (303)
Q Consensus 170 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~ 249 (303)
|.||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus 125 ----------------------------------------------g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~ 157 (223)
T 2f8y_A 125 ----------------------------------------------GKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNR 157 (223)
T ss_dssp ----------------------------------------------SCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred ----------------------------------------------CCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence 34556666666666666666666666 3566666
Q ss_pred CChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCC
Q 043678 250 GWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKE 301 (303)
Q Consensus 250 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~ 301 (303)
|.||||+|++.++.+++++|++ .|++++.+|..|.|||++|++.++.+
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~~~ 205 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLD----HFANRDITDHMDRLPRDIAQERMHHD 205 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred CcCHHHHHHHcCCHHHHHHHHH----cCCCCccccccCCCHHHHHHHhcchH
Confidence 6666666666666666666665 35556666666666666666666544
|
| >4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-38 Score=257.30 Aligned_cols=252 Identities=15% Similarity=0.123 Sum_probs=206.8
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.++|++|+++|++....+..+.++++.+ +..+..+.+..++. .+.+++.++..|.||||+|+
T Consensus 60 ~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~d~~g~t~l~~A~ 133 (337)
T 4g8k_A 60 WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA--AIAGSVKLLKLFLS----KGADVNECDFYGFTAFMEAA 133 (337)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHHTCHHHHHHHHT----TTCCTTCBCTTCCBHHHHHH
T ss_pred cCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH--HhcccchhhHHhhh----ccchhhhhccCCCCHHHHHH
Confidence 3899999999999999999999998888888899999999 99999999988887 78999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHh-hCCcceeeecccccch
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKK-TNNLILIFRDSDEKTN 160 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~-~~~~~~~~~~~~~~~~ 160 (303)
..|+.+++++|+++|++++.... ........+..|.||||+|+..|+.++|++|+ ..|++++..+..|.++
T Consensus 134 ~~~~~~~~~~ll~~ga~~~~~~~--------~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~ 205 (337)
T 4g8k_A 134 VYGKVKALKFLYKRGANVNLRRK--------TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 205 (337)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCC--------CC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCH
T ss_pred HcCcHHHHHHHHHcCCCcchhhc--------cccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcH
Confidence 99999999999999988753222 11123456778999999999999999999988 5799999999999998
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccc------------------cccCCcccHHhH
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNI------------------ADKDRKMTALHL 222 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~------------------~~~~~~~t~L~~ 222 (303)
++....... ......+++.|++.+.+ ++..+..|.||||.++.. ..+..|.||||+
T Consensus 206 l~~~~~~~~-----~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~ 279 (337)
T 4g8k_A 206 LIHALLSSD-----DSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 279 (337)
T ss_dssp HHHHHHHSC-----TTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHH
T ss_pred HHHHHHHcC-----cccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHH
Confidence 876542211 11124567778887776 888999999999976511 223579999999
Q ss_pred HHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccC
Q 043678 223 AAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEG 283 (303)
Q Consensus 223 a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~ 283 (303)
|++.|+.++|++||++|+++ + +.+|||+|++.|+.+++++|++ +||+++..
T Consensus 280 A~~~g~~~iv~~Ll~~GAd~-n-----~~~~L~~A~~~~~~~iv~~Ll~----~GA~~d~~ 330 (337)
T 4g8k_A 280 AVELKLKKIAELLCKRGAST-D-----CGDLVMTARRNYDHSLVKVLLS----HGAKEDFH 330 (337)
T ss_dssp HHHTTCHHHHHHHHTTSCSS-T-----TCCHHHHHHHTTCHHHHHHHHH----TTCCC---
T ss_pred HHHcCCHHHHHHHHHCCCCC-C-----CCCHHHHHHHcCCHHHHHHHHH----CcCCCCCC
Confidence 99999999999999999984 4 3569999999999999998888 46767653
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=253.24 Aligned_cols=216 Identities=16% Similarity=0.144 Sum_probs=193.6
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|++.|++....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 60 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~ga~~~~~~~~g~t~L~~A~ 133 (285)
T 3d9h_A 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEA--CLGGHLSCVKILLK----HGAQVNGVTADWHTPLFNAC 133 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCSSCCCTTCCCHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHCCcHHHHHHHHH----CCCCCCCCCCCCCCHHHHHH
Confidence 4899999999999999999999988777888899999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|++.|++++ .+..|.||||+|+..|+.+++++|++.|++++..+..|.+++
T Consensus 134 ~~~~~~~v~~Ll~~g~~~~-------------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L 194 (285)
T 3d9h_A 134 VSGSWDCVNLLLQHGASVQ-------------------PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL 194 (285)
T ss_dssp HHTCHHHHHHHHHTTCCSS-------------------CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHH
T ss_pred HcCHHHHHHHHHHCCCCCC-------------------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence 9999999999999988753 244599999999999999999999999999999999999999
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
+.+..... .+++++|++.+.+ ++. +. .|.||||+|+..|+.+++++|+++|++
T Consensus 195 ~~A~~~~~---------~~~v~~Ll~~ga~-~~~-~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~gad 247 (285)
T 3d9h_A 195 YLACENQQ---------RACVKKLLESGAD-VNQ-GK----------------GQDSPLHAVVRTASEELACLLMDFGAD 247 (285)
T ss_dssp HHHHHTTC---------HHHHHHHHHTTCC-TTC-CB----------------TTBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHcCc---------HHHHHHHHHCCCC-CCC-CC----------------CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 88875543 5899999998776 332 32 566779999999999999999999999
Q ss_pred ccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 242 CYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 242 ~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
++.+|..|+||||+|+ ++.++++.|++.
T Consensus 248 -~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~ 275 (285)
T 3d9h_A 248 -TQAKNAEGKRPVELVP--PESPLAQLFLER 275 (285)
T ss_dssp -TTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred -CCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence 5899999999999999 456888888886
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=260.28 Aligned_cols=225 Identities=18% Similarity=0.147 Sum_probs=197.5
Q ss_pred ChhHHHHHhcCCChhHHHHH--------HHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCC
Q 043678 2 DLNFFKAASAGNSEPFKDMA--------RDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKG 73 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll--------~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g 73 (303)
.||||.|+..|+.+++++|+ +.|++.+..+..|.||||+| +..|+.+++++|++ .|++++.++..|
T Consensus 126 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A--~~~g~~~iv~~Ll~----~ga~~~~~~~~g 199 (373)
T 2fo1_E 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA--VLARRRRLVAYLMK----AGADPTIYNKSE 199 (373)
T ss_dssp CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHH----TTCCSCCCCTTC
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHH--HHcChHHHHHHHHH----CCCCCcccCCCC
Confidence 48999999999999999887 45776677777899999999 99999999999999 799999999999
Q ss_pred CcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcC---cHHHHHhHhhCCcce
Q 043678 74 DTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHG---NVDLFKLKKTNNLIL 150 (303)
Q Consensus 74 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~---~~~~v~~L~~~~~~~ 150 (303)
.||||+|+..|+.+++++|++++.. ...++..|..|.||||+|+..+ +.+++++|++.|+++
T Consensus 200 ~t~L~~A~~~g~~~~v~~Ll~~~~~---------------~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~ 264 (373)
T 2fo1_E 200 RSALHQAAANRDFGMMVYMLNSTKL---------------KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264 (373)
T ss_dssp CCHHHHHHHTTCHHHHHHHTTSHHH---------------HHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHCCCHHHHHHHHhcCcc---------------ccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCc
Confidence 9999999999999999999998731 1125688999999999999998 899999999999887
Q ss_pred ee--------ecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhH
Q 043678 151 IF--------RDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHL 222 (303)
Q Consensus 151 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~ 222 (303)
.. .+..|.++++.+..... .+++++|++.++..++..+..|. ||||+
T Consensus 265 ~~~~~~~~~~~d~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~~~~~n~~d~~g~----------------TpL~~ 319 (373)
T 2fo1_E 265 DYDGAARKDSEKYKGRTALHYAAQVSN---------MPIVKYLVGEKGSNKDKQDEDGK----------------TPIML 319 (373)
T ss_dssp SCCSGGGTSSSSCCCCCTHHHHHSSCC---------HHHHHHHHHHSCCCTTCCCTTCC----------------CHHHH
T ss_pred ccccccccCcccccCCCHHHHHHHhCC---------HHHHHHHHHhcCCCccCcCCCCC----------------CHHHH
Confidence 75 55678889988876544 58999999988665777776665 55999
Q ss_pred HHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcc
Q 043678 223 AAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273 (303)
Q Consensus 223 a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~ 273 (303)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++..
T Consensus 320 A~~~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~ 369 (373)
T 2fo1_E 320 AAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDRCR 369 (373)
T ss_dssp HHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHcCCC-ccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 9999999999999999999 5899999999999999999999999998864
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=241.84 Aligned_cols=225 Identities=19% Similarity=0.216 Sum_probs=180.6
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccc-cCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVN-AKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~g~tpL~~A 80 (303)
.+||+.|+..|+.+++++|++.|.+....+..|.||||+| +..|+.+++++|++ .+.+++... ..|.||||+|
T Consensus 10 ~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 10 TWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWA--AINNRIDLVKYYIS----KGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp GCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCBTTTTBCHHHHH
T ss_pred chHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHH--HHhCCHHHHHHHHH----cCCcchhhcCCcCCChhHHH
Confidence 4789999999999999999999988777777899999999 99999999999998 677666544 4599999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|++.++++...+..|.++
T Consensus 84 ~~~~~~~~v~~Ll~~g~~~~------------------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~ 145 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKYGADPS------------------LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145 (240)
T ss_dssp HHHTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHcCCHHHHHHHHHcCCCCc------------------ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcH
Confidence 99999999999999987754 788899999999999999999999999999888888888887
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
++.+..... ..++++.|+..+.+ ++..+. ..|.||||+|+..|+.+++++|+++|+
T Consensus 146 l~~a~~~~~--------~~~~~~~L~~~~~~-~~~~~~---------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 201 (240)
T 3eu9_A 146 LMWAAYRTH--------SVDPTRLLLTFNVS-VNLGDK---------------YHKNTALHWAVLAGNTTVISLLLEAGA 201 (240)
T ss_dssp HHHHHHHCC--------SSTTHHHHHHTTCC-TTCCCT---------------TTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHhCC--------hHHHHHHHHhcCCC-cchhhc---------------cCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 776652221 13555666666555 333322 134466888888888888888888888
Q ss_pred cccccccCCCChHHHHHHHhCCchhhHHHhhcccc
Q 043678 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSL 275 (303)
Q Consensus 241 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~ 275 (303)
+ ++.+|..|.||||+|++.++.+++++|++....
T Consensus 202 ~-~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 202 N-VDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp C-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred C-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 7 477888888888888888888888888776543
|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=239.77 Aligned_cols=205 Identities=19% Similarity=0.107 Sum_probs=172.2
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
.|.||||+| +..|+.+++++|++. .|.+++.++..|.||||+|+..|+.+++++|++.|++....
T Consensus 2 ~g~t~L~~A--~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~---------- 66 (232)
T 2rfa_A 2 IWESPLLLA--AKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE---------- 66 (232)
T ss_dssp CTTCHHHHH--HHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC----------
T ss_pred CCCCHHHHH--HHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccc----------
Confidence 489999999 999999999999982 49999999999999999999999999999999999875311
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
..+..|..|.||||+|+..|+.+++++|++.|+++...+....... .
T Consensus 67 ---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~------------------------------~ 113 (232)
T 2rfa_A 67 ---PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHY------------------------------R 113 (232)
T ss_dssp ---CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSC------------------------------C
T ss_pred ---cccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceee------------------------------c
Confidence 1246778999999999999999999999999888666544321100 0
Q ss_pred hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 193 ~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
.+..+ ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++..+++.
T Consensus 114 ~~~~~----------------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~ 176 (232)
T 2rfa_A 114 PHNLI----------------YYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYNL 176 (232)
T ss_dssp TTCSC----------------CCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTCSCHHHHHHHHHH
T ss_pred ccccc----------------cCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCChHHHHHHHHH
Confidence 11112 2567889999999999999999999999 589999999999999999999999777777
Q ss_pred ccchhccc------ccCCCCCCcHHHHHHhcCCCCC
Q 043678 273 NSLARSLI------DEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 273 ~~~~~~~~------~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+...|+++ +.+|..|+||||+|++.|+.++
T Consensus 177 Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~ 212 (232)
T 2rfa_A 177 LLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212 (232)
T ss_dssp HHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHH
Confidence 77778877 5899999999999999998764
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=248.49 Aligned_cols=229 Identities=20% Similarity=0.076 Sum_probs=166.9
Q ss_pred hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchh---hhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchH
Q 043678 29 LTAKAKNTILHINIISSERENVSTKFVEEILEKCPAL---LLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEE 105 (303)
Q Consensus 29 ~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~---~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 105 (303)
..+..|.||||+| +..|+.+++++|++ .+.+ ++.++..|.||||+|+..|+.+++++|+++|+++
T Consensus 4 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------ 71 (282)
T 1oy3_D 4 YVTEDGDTALHLA--VIHQHEPFLDFLLG----FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV------ 71 (282)
T ss_dssp CCCTTCCCHHHHH--HHTTCHHHHHHHHH----HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS------
T ss_pred ccCCCCCcHHHHH--HHcCCHHHHHHHHh----cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------
Confidence 3566699999999 99999999999998 3554 8889999999999999999999999999999875
Q ss_pred HHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhcc-chhHHhhhhhH---HHH
Q 043678 106 LENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRH-LDLFRIQTNSI---YAA 181 (303)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~ 181 (303)
+.++..|.||||+|+..|+.+++++|++.+.................... ........... ...
T Consensus 72 ------------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (282)
T 1oy3_D 72 ------------LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE 139 (282)
T ss_dssp ------------SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------
T ss_pred ------------CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchh
Confidence 48889999999999999999999999988776332222111100000000 00000000000 000
Q ss_pred HHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccC-CCChHHHHHHHh
Q 043678 182 LPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDN-RGWNFLHYAMVS 260 (303)
Q Consensus 182 ~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~-~g~tpl~~A~~~ 260 (303)
....+......++. ....|.||||+|+..|+.+++++|+++|+++ +..+. .|+||||+|++.
T Consensus 140 ~~~~~~~~~~~~~~----------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~ 202 (282)
T 1oy3_D 140 EEPRDEDWRLQLEA----------------ENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEA 202 (282)
T ss_dssp ----CCCGGGGTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHT
T ss_pred hhhhhhhhhhcCCC----------------cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHc
Confidence 00000000111122 2236778899999999999999999999995 77775 599999999999
Q ss_pred CCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 261 FHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 261 ~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
|+.+++++|++ .|++++.+|..|+||||+|++.++.++
T Consensus 203 ~~~~~v~~Ll~----~gad~~~~d~~g~tpL~~A~~~~~~~~ 240 (282)
T 1oy3_D 203 QAASVLELLLK----AGADPTARMYGGRTPLGSALLRPNPIL 240 (282)
T ss_dssp TCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred CCHHHHHHHHH----cCCCCcccccCCCCHHHHHHHcCCcHH
Confidence 99999998888 488899999999999999999998654
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=248.05 Aligned_cols=191 Identities=13% Similarity=0.077 Sum_probs=100.7
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~ 82 (303)
||||.|+..|+.+++++|+++|++.... +|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+.
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A--~~~g~~~~v~~Ll~----~ga~~~~~d~~g~t~L~~A~~ 104 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQA--ATLEDTKIVKILLF----SGLDDSQFDDKGNTALYYAVD 104 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHH--TTSSSCHHHHHHHH----TTCCTTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHH--HHcCCHHHHHHHHH----CCCCCCCcCCCCCcHHHHHHH
Confidence 4555555555555555555554443222 245555555 55555555555554 445555555555555555555
Q ss_pred hCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCC-ccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 83 FGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEK-NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 83 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
.|+.+++++|+++|++++ ..+..| .||||+|+..|+.+++++|++.|.+....
T Consensus 105 ~g~~~~v~~Ll~~ga~~~------------------~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-------- 158 (285)
T 3kea_A 105 SGNMQTVKLFVKKNWRLM------------------FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-------- 158 (285)
T ss_dssp TTCHHHHHHHHHHCGGGG------------------GCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC--------
T ss_pred cCCHHHHHHHHhcCCCCC------------------ccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc--------
Confidence 555555555555544432 444444 45555555555555555544444332000
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
..|.||||+|+..|+.+++++|+++|++
T Consensus 159 ----------------------------------------------------~~g~t~L~~A~~~g~~~~v~~Ll~~gad 186 (285)
T 3kea_A 159 ----------------------------------------------------AILLSCIHITIKNGHVDMMILLLDYMTS 186 (285)
T ss_dssp ----------------------------------------------------STHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------cCCccHHHHHHHcChHHHHHHHHHcCCC
Confidence 0345566666666666666666666666
Q ss_pred ccccccCCCChH-HHHHHHhCCchhhHHHhhcccchhcccccCC
Q 043678 242 CYELVDNRGWNF-LHYAMVSFHVGQLRNLLENNSLARSLIDEGD 284 (303)
Q Consensus 242 ~~~~~~~~g~tp-l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d 284 (303)
++.+|..|+|| ||+|+..++.+++++|++ .|++++.+|
T Consensus 187 -~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~----~gad~~~~~ 225 (285)
T 3kea_A 187 -TNTNNSLLFIPDIKLAIDNKDIEMLQALFK----YDINIYSAN 225 (285)
T ss_dssp -TCTTCCCBCCTTHHHHHHHTCHHHHHHHTT----SCBCSTTTT
T ss_pred -CCcccCCCCChHHHHHHHcCCHHHHHHHHH----cCCCCCCCC
Confidence 36666666665 666666666666665555 355555555
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=245.98 Aligned_cols=216 Identities=17% Similarity=0.136 Sum_probs=176.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHH----hhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIE----SLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPL 77 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~----~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL 77 (303)
.||||.|+..|+.+++++|++.+.. ....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.|||
T Consensus 9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA--VITNQPEIAEALLG----AGCDPELRDFRGNTPL 82 (236)
T ss_dssp CCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHH--HHTTCHHHHHCCCS----CCCCSCCCCTTCCCHH
T ss_pred CchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCCcCCCCCCHH
Confidence 4899999999999999999998663 446677799999999 99999999999998 7999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccc
Q 043678 78 HLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDE 157 (303)
Q Consensus 78 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~ 157 (303)
|+|+..|+.+++++|++.|++... ...++..+..|.||||+|+..|+.+++++|++.|+++
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------- 143 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHL------------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV------- 143 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSS------------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-------
T ss_pred HHHHHcCCHHHHHHHHhcccchhH------------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------
Confidence 999999999999999999875431 1224578889999999999999999998877776642
Q ss_pred cchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhh
Q 043678 158 KTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS 237 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~ 237 (303)
+..+. ..|.||||+|+..|+.+++++|++
T Consensus 144 ------------------------------------~~~~~---------------~~g~tpL~~A~~~~~~~~v~~Ll~ 172 (236)
T 1ikn_D 144 ------------------------------------NAQEP---------------CNGRTALHLAVDLQNPDLVSLLLK 172 (236)
T ss_dssp ------------------------------------TCCCT---------------TTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred ------------------------------------CCCCC---------------CCCCCHHHHHHHcCCHHHHHHHHH
Confidence 22222 034577999999999999999999
Q ss_pred cCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccc--cCCCCCCcHHHHHHhcC
Q 043678 238 ENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLID--EGDAKGNTPLHVLAAVR 298 (303)
Q Consensus 238 ~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~--~~d~~g~tpL~~A~~~~ 298 (303)
+|++ ++.+|..|+||||+|+..++.+++++|++. |++.. ..+..|.||.+.+....
T Consensus 173 ~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~----ga~~~~~~~~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 173 CGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL----TLENLQMLPESEDEESYDTESEFT 230 (236)
T ss_dssp TTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT----SCGGGSSCCCCCTTTCCCCC----
T ss_pred cCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHc----chhhhhcCCccchHHHHhhhcccc
Confidence 9999 589999999999999999999999998886 44444 77889999988766544
|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=235.08 Aligned_cols=202 Identities=17% Similarity=0.152 Sum_probs=168.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHH-HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhh-----hccccCCCc
Q 043678 2 DLNFFKAASAGNSEPFKDMARD-VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALL-----LQVNAKGDT 75 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~-----~~~~~~g~t 75 (303)
+||||.|+..|+.+++++|++. +.+....+..|.||||+| +..|+.+++++|++ .+.++ +..+..|.|
T Consensus 4 ~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~g~t 77 (232)
T 2rfa_A 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA--ALYDNLEAAMVLME----AAPELVFEPMTSELYEGQT 77 (232)
T ss_dssp TCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----HCGGGGGCCCCSTTTTTCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCchhccccccccCCCCcC
Confidence 5899999999999999999998 887777888899999999 99999999999999 46655 567789999
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecc
Q 043678 76 PLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDS 155 (303)
Q Consensus 76 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~ 155 (303)
|||+|+..|+.+++++|+++|++++..+... .+....+..+..|.||||+|+..|+.+++++|++.|++
T Consensus 78 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~-----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------ 146 (232)
T 2rfa_A 78 ALHIAVINQNVNLVRALLARGASVSARATGS-----VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD------ 146 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCCSG-----GGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC------
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCcccCCc-----ceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC------
Confidence 9999999999999999999998876322110 01111233456899999999999999999998887775
Q ss_pred cccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHH---
Q 043678 156 DEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTV--- 232 (303)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v--- 232 (303)
++..|. .|.||||+|+..|+.+++
T Consensus 147 -------------------------------------~~~~d~----------------~g~t~L~~A~~~~~~~~~~~i 173 (232)
T 2rfa_A 147 -------------------------------------IRAQDS----------------LGNTVLHILILQPNKTFACQM 173 (232)
T ss_dssp -------------------------------------TTCCCT----------------TSCCHHHHHHTCSCHHHHHHH
T ss_pred -------------------------------------CCCCCC----------------CCCCHHHHHHHcCChHHHHHH
Confidence 333344 345669999999999988
Q ss_pred -HHHhhcCCccc-----ccccCCCChHHHHHHHhCCchhhHHHhhcc
Q 043678 233 -ERIISENPKCY-----ELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273 (303)
Q Consensus 233 -~~Ll~~g~~~~-----~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~ 273 (303)
++|+++|++.. +.+|..|+||||+|++.|+.+++++|++.+
T Consensus 174 ~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 174 YNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 99999999842 588999999999999999999999999864
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=231.25 Aligned_cols=189 Identities=23% Similarity=0.178 Sum_probs=169.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCch-hhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA-LLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~-~~~~~~~~g~tpL~~A 80 (303)
.||||.|+..|+.+++++|+++|++....+..|.||||+| +..|+.+++++|++ .+. +++..+..|.||||+|
T Consensus 26 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~A 99 (223)
T 2f8y_A 26 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA--VSADAQGVFQILIR----NRATDLDARMHDGTTPLILA 99 (223)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----BTTSCTTCCCTTCCCHHHHH
T ss_pred CchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCcccCCCCCCcHHHHH
Confidence 4899999999999999999999988877888899999999 99999999999998 444 8889999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.|+++
T Consensus 100 ~~~~~~~~~~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---------- 151 (223)
T 2f8y_A 100 ARLAVEGMLEDLINSHADV------------------NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK---------- 151 (223)
T ss_dssp HHHTCHHHHHHHHHTTCCT------------------TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT----------
T ss_pred HHhCcHHHHHHHHHcCCCC------------------cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC----------
Confidence 9999999999999998874 478899999999999999999999988777652
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
+..+. .|.||||+|+..|+.+++++|+++|+
T Consensus 152 ---------------------------------~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~ga 182 (223)
T 2f8y_A 152 ---------------------------------DMQNN----------------REETPLFLAAREGSYETAKVLLDHFA 182 (223)
T ss_dssp ---------------------------------TCCCT----------------TCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ---------------------------------CCcCC----------------CCcCHHHHHHHcCCHHHHHHHHHcCC
Confidence 33333 44577999999999999999999999
Q ss_pred cccccccCCCChHHHHHHHhCCchhhHHHhhccc
Q 043678 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNS 274 (303)
Q Consensus 241 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~ 274 (303)
+ ++.+|..|.||+|+|++.++.+++++|++.+.
T Consensus 183 ~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~ 215 (223)
T 2f8y_A 183 N-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215 (223)
T ss_dssp C-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred C-CccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence 9 58999999999999999999999999998654
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=236.30 Aligned_cols=187 Identities=22% Similarity=0.170 Sum_probs=168.5
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCch-hhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA-LLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~-~~~~~~~~g~tpL~~A 80 (303)
.||||.|+..|+.+++++|+++|++....+..|.||||+| +..|+.+++++|++ .+. +++..+..|.||||+|
T Consensus 58 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~A 131 (253)
T 1yyh_A 58 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA--VSADAQGVFQILIR----NRATDLDARMHDGTTPLILA 131 (253)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHH----STTSCTTCCCTTCCCHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCccccCCCCCcHHHHH
Confidence 4899999999999999999999988888888899999999 99999999999998 555 8899999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.|+++
T Consensus 132 ~~~~~~~~v~~Ll~~g~~~------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~---------- 183 (253)
T 1yyh_A 132 ARLAVEGMLEDLINSHADV------------------NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK---------- 183 (253)
T ss_dssp HHHTCSSHHHHHHHTTCCT------------------TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT----------
T ss_pred HHcChHHHHHHHHHcCCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------
Confidence 9999999999999998874 488899999999999999999999988877752
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
+..+. .|.||||+|+..|+.+++++|+++|+
T Consensus 184 ---------------------------------~~~~~----------------~g~tpL~~A~~~~~~~~v~~Ll~~ga 214 (253)
T 1yyh_A 184 ---------------------------------DMQNN----------------REETPLFLAAREGSYETAKVLLDHFA 214 (253)
T ss_dssp ---------------------------------TCCCT----------------TSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ---------------------------------CCcCC----------------CCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 33333 45577999999999999999999999
Q ss_pred cccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 241 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
+ ++.+|..|+||+|+|++.|+.+++++|...
T Consensus 215 ~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 215 N-RDITDHMDRLPRDIAQERMHHDIVRLLDLE 245 (253)
T ss_dssp C-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred C-ccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 9 589999999999999999999999998875
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=242.66 Aligned_cols=202 Identities=19% Similarity=0.162 Sum_probs=169.3
Q ss_pred HhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHH
Q 043678 9 ASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDI 88 (303)
Q Consensus 9 ~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~ 88 (303)
+...+.+.++.++..+ +....+..|.||||+| +..|+.+++++|++ .|.+++.. +|.||||+|+..|+.++
T Consensus 7 i~~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~--~g~t~L~~A~~~g~~~~ 77 (285)
T 3kea_A 7 INTWKSKQLKSFLSSK-DTFKADVHGHSASYYA--IADNNVRLVCTLLN----AGALKNLL--ENEFPLHQAATLEDTKI 77 (285)
T ss_dssp GGGCCHHHHHHHHHST-TTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTGGGSCC--TTCCHHHHHTTSSSCHH
T ss_pred HHhcCHHHHHHHHHhC-CCCccCCCCCCHHHHH--HHcCCHHHHHHHHh----CCCCCCCC--CCCCHHHHHHHcCCHHH
Confidence 4555655555555543 3446777799999999 99999999999999 78888887 48999999999999999
Q ss_pred HHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccc
Q 043678 89 VRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHL 168 (303)
Q Consensus 89 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (303)
+++|+++|++++ .+|..|.||||+|+..|+.+++++|++.|+++
T Consensus 78 v~~Ll~~ga~~~------------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------------------ 121 (285)
T 3kea_A 78 VKILLFSGLDDS------------------QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL------------------ 121 (285)
T ss_dssp HHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG------------------
T ss_pred HHHHHHCCCCCC------------------CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC------------------
Confidence 999999998754 78899999999999999999999987777653
Q ss_pred hhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCc-ccHHhHHHhcCCHHHHHHHhhcCCccccccc
Q 043678 169 DLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRK-MTALHLAAGKGDARTVERIISENPKCYELVD 247 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~-~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~ 247 (303)
+..+. .| .||||+|+..|+.+++++|+++|++..+ .
T Consensus 122 -------------------------~~~~~----------------~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~ 158 (285)
T 3kea_A 122 -------------------------MFYGK----------------TGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--L 158 (285)
T ss_dssp -------------------------GGCSS----------------SGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--C
T ss_pred -------------------------CccCC----------------CCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--c
Confidence 22222 33 5779999999999999999999988522 2
Q ss_pred CCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcH-HHHHHhcCCCCC
Q 043678 248 NRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTP-LHVLAAVRPKEF 302 (303)
Q Consensus 248 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tp-L~~A~~~~~~~i 302 (303)
..|.||||+|+..|+.+++++|++ .|++++.+|..|+|| ||+|++.++.++
T Consensus 159 ~~g~t~L~~A~~~g~~~~v~~Ll~----~gad~n~~~~~g~t~~L~~A~~~~~~~~ 210 (285)
T 3kea_A 159 AILLSCIHITIKNGHVDMMILLLD----YMTSTNTNNSLLFIPDIKLAIDNKDIEM 210 (285)
T ss_dssp STHHHHHHHHHHTTCHHHHHHHHH----HHHHTCTTCCCBCCTTHHHHHHHTCHHH
T ss_pred cCCccHHHHHHHcChHHHHHHHHH----cCCCCCcccCCCCChHHHHHHHcCCHHH
Confidence 389999999999999999998888 588899999999998 999999998654
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-36 Score=232.86 Aligned_cols=194 Identities=19% Similarity=0.182 Sum_probs=166.9
Q ss_pred hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHH
Q 043678 29 LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELEN 108 (303)
Q Consensus 29 ~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 108 (303)
..|..|.||||+| +..|+.+++++|++.+...+.+++.++..|.||||+|+..|+.+++++|++.|++++
T Consensus 4 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------- 73 (241)
T 1k1a_A 4 RADEDGDTPLHIA--VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-------- 73 (241)
T ss_dssp ---CTTCCHHHHH--HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred ccCCCCCcHHHHH--HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc--------
Confidence 4566799999999 999999999999998888899999999999999999999999999999999998754
Q ss_pred HHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHh
Q 043678 109 RIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEK 188 (303)
Q Consensus 109 ~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 188 (303)
..+..|.||||+|+..++.+++++|++.+...
T Consensus 74 ----------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-------------------------------------- 105 (241)
T 1k1a_A 74 ----------ALDRHGQTAAHLACEHRSPTCLRALLDSAAPG-------------------------------------- 105 (241)
T ss_dssp ----------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTT--------------------------------------
T ss_pred ----------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc--------------------------------------
Confidence 78899999999999999999999977665420
Q ss_pred ccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCccccccc-CCCChHHHHHHHhCCchhhH
Q 043678 189 KKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVD-NRGWNFLHYAMVSFHVGQLR 267 (303)
Q Consensus 189 ~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~-~~g~tpl~~A~~~~~~~~~~ 267 (303)
...++..+. .|.||||+|+..|+.+++++|++.|+++ +..+ ..|.||||+|++.|+.++++
T Consensus 106 -~~~~~~~~~----------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~ 167 (241)
T 1k1a_A 106 -TLDLEARNY----------------DGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQ 167 (241)
T ss_dssp -SCCTTCCCT----------------TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred -cccccccCc----------------CCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHH
Confidence 001222233 4567799999999999999999999995 7777 88999999999999999999
Q ss_pred HHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 268 NLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 268 ~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+|++ .|++++.+|..|+||||+|+..++.++
T Consensus 168 ~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~ 198 (241)
T 1k1a_A 168 LLLQ----HGANVNAQMYSGSSALHSASGRGLLPL 198 (241)
T ss_dssp HHHH----TTCCTTCBCTTSCBHHHHHHHHTCHHH
T ss_pred HHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence 9888 478899999999999999999988654
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-36 Score=232.93 Aligned_cols=218 Identities=18% Similarity=0.160 Sum_probs=190.0
Q ss_pred cccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHH
Q 043678 31 AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRI 110 (303)
Q Consensus 31 ~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~ 110 (303)
+..|.|+||+| +..|+.+++++|++ .|.+++.++..|.||||+|+..|+.+++++|++.|++..
T Consensus 6 d~~~~~~l~~A--~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---------- 69 (240)
T 3eu9_A 6 DDYSTWDIVKA--TQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD---------- 69 (240)
T ss_dssp SCGGGCCHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------
T ss_pred ccccchHHHHH--HHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch----------
Confidence 44589999999 99999999999999 789999999999999999999999999999999987653
Q ss_pred HHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhcc
Q 043678 111 EAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKK 190 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 190 (303)
...+..|.||||+|+..|+.+++++|++.|+++...+..+.++++.+..... .+++++|++.+.
T Consensus 70 -------~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~~ 133 (240)
T 3eu9_A 70 -------QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH---------TSIVAYLIAKGQ 133 (240)
T ss_dssp -------CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC---------HHHHHHHHHTTC
T ss_pred -------hhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCH---------HHHHHHHHhcCC
Confidence 2344569999999999999999999999999999999999999988875443 588999998876
Q ss_pred chhchhhhcCCCcccccccccccCCcccHHhHHHhcCC-HHHHHHHhhcCCcccccccC-CCChHHHHHHHhCCchhhHH
Q 043678 191 NLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGD-ARTVERIISENPKCYELVDN-RGWNFLHYAMVSFHVGQLRN 268 (303)
Q Consensus 191 ~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~-~~~v~~Ll~~g~~~~~~~~~-~g~tpl~~A~~~~~~~~~~~ 268 (303)
+ ++..+.. |.||||+|+..++ .+++++|++.|+++ +..+. .|.||||+|+..++.+++++
T Consensus 134 ~-~~~~~~~----------------g~t~l~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~ 195 (240)
T 3eu9_A 134 D-VDMMDQN----------------GMTPLMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISL 195 (240)
T ss_dssp C-TTCCCTT----------------SCCHHHHHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHH
T ss_pred C-ccccCCC----------------CCcHHHHHHHhCChHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHH
Confidence 6 5555544 4566999996665 88999999999994 77776 89999999999999999988
Q ss_pred HhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 269 LLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 269 ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
|++ .|++++.+|..|+|||++|++.++.++
T Consensus 196 Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~ 225 (240)
T 3eu9_A 196 LLE----AGANVDAQNIKGESALDLAKQRKNVWM 225 (240)
T ss_dssp HHH----HTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred HHH----cCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 888 578899999999999999999998764
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=235.80 Aligned_cols=210 Identities=18% Similarity=0.082 Sum_probs=169.2
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhc----cccCCCcHHHHHHHh---CCHHHHHHHHHHhHHhhcCchH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQ----VNAKGDTPLHLAAKF---GHFDIVRVLIERAKLAQRGDEE 105 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~----~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~ 105 (303)
.|.||||+| +..|+.+.++.|++++...|.+++. .+..|.||||+|+.. |+.+++++|++.|+++...+..
T Consensus 1 ~G~t~L~~A--~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 78 (256)
T 2etb_A 1 FDRDRLFSV--VSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78 (256)
T ss_dssp CCHHHHHHH--HHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred CCccHHHHH--HHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence 388999999 9999999887777766668999998 899999999999999 9999999999999986522210
Q ss_pred HHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHH
Q 043678 106 LENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKL 185 (303)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (303)
........|..|.||||+|+..|+.+++++|++.|++++..+..+..+.
T Consensus 79 -------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~------------------------ 127 (256)
T 2etb_A 79 -------VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQK------------------------ 127 (256)
T ss_dssp -------GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSC------------------------
T ss_pred -------cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccc------------------------
Confidence 0001123457899999999999999999999999988766665443100
Q ss_pred HHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhh---cCCcccccccCCCChHHHHHHH--h
Q 043678 186 LEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS---ENPKCYELVDNRGWNFLHYAMV--S 260 (303)
Q Consensus 186 l~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~---~g~~~~~~~~~~g~tpl~~A~~--~ 260 (303)
+ ....+ ..|.||||+|+..|+.+++++|++ +|++ ++.+|..|+||||+|+. .
T Consensus 128 -----~-~~~~~----------------~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~ 184 (256)
T 2etb_A 128 -----H-QGTCF----------------YFGELPLSLAACTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIAD 184 (256)
T ss_dssp -----C-SSSCC----------------CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCC
T ss_pred -----c-ccccc----------------cCCCCHHHHHHHcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHccc
Confidence 0 00011 137788999999999999999999 8999 58999999999999999 7
Q ss_pred CCch-------hhHHHhhcccchhccc-------ccCCCCCCcHHHHHHhcCCCCC
Q 043678 261 FHVG-------QLRNLLENNSLARSLI-------DEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 261 ~~~~-------~~~~ll~~~~~~~~~~-------~~~d~~g~tpL~~A~~~~~~~i 302 (303)
++.+ ++++|++ .|+++ +.+|..|+||||+|++.|+.++
T Consensus 185 ~~~~~~~~~~~iv~~Ll~----~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~ 236 (256)
T 2etb_A 185 NSPENSALVIHMYDGLLQ----MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI 236 (256)
T ss_dssp SCHHHHHHHHHHHHHHHH----HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred CCchhhHHHHHHHHHHHH----cCCCcccccccccccCCCCCCHHHHHHHhCCHHH
Confidence 7766 6666666 68888 8999999999999999998764
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=239.06 Aligned_cols=195 Identities=21% Similarity=0.203 Sum_probs=162.7
Q ss_pred hcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHH
Q 043678 30 TAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENR 109 (303)
Q Consensus 30 ~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~ 109 (303)
.+..|.||||+| +..|+.+++++|++.....+.+++.++..|.||||+|+..|+.+++++|+++|+++
T Consensus 4 ~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---------- 71 (236)
T 1ikn_D 4 LTEDGDSFLHLA--IIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP---------- 71 (236)
T ss_dssp ---CCCCTTHHH--HHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS----------
T ss_pred CCCCCCchhHHH--HHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------
Confidence 455699999999 99999999999998654455678999999999999999999999999999998874
Q ss_pred HHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhc
Q 043678 110 IEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKK 189 (303)
Q Consensus 110 ~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 189 (303)
+.++..|.||||+|+..|+.+++++|++.+.+....
T Consensus 72 --------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~------------------------------------ 107 (236)
T 1ikn_D 72 --------ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH------------------------------------ 107 (236)
T ss_dssp --------CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSS------------------------------------
T ss_pred --------CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHH------------------------------------
Confidence 478899999999999999999999988876642110
Q ss_pred cchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccC-CCChHHHHHHHhCCchhhHH
Q 043678 190 KNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDN-RGWNFLHYAMVSFHVGQLRN 268 (303)
Q Consensus 190 ~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~-~g~tpl~~A~~~~~~~~~~~ 268 (303)
..++..+. .|.||||+|+..|+.+++++|+++|++ ++.++. .|+||||+|+..|+.+++++
T Consensus 108 -~~~~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~ 169 (236)
T 1ikn_D 108 -SILKATNY----------------NGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSL 169 (236)
T ss_dssp -CGGGCCCT----------------TCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred -HHhhccCC----------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 00122222 466779999999999999999999999 478887 99999999999999999888
Q ss_pred HhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 269 LLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 269 ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
|++ .|++++.+|..|+||||+|+..++.++
T Consensus 170 Ll~----~ga~~~~~~~~g~tpl~~A~~~~~~~~ 199 (236)
T 1ikn_D 170 LLK----CGADVNRVTYQGYSPYQLTWGRPSTRI 199 (236)
T ss_dssp HHT----TTCCSCCCCTTCCCGGGGCTTSSCHHH
T ss_pred HHH----cCCCCCcccCCCCCHHHHHHccCchHH
Confidence 888 588899999999999999999988654
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=236.46 Aligned_cols=218 Identities=18% Similarity=0.140 Sum_probs=158.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhh--------hhcccCCchhhhhhhhcc---cchhhHHHHHHHHHhCchh-----
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESL--------LTAKAKNTILHINIISSE---RENVSTKFVEEILEKCPAL----- 65 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~--------~~~~~g~t~Lh~A~~~~~---~~~~~~~~Ll~~~~~~~~~----- 65 (303)
.||||.|+..|+.++|+.|++.+.+.. ..+..|.||||+| +.. |+.+++++|++. |.+
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A--~~~~~~g~~~~v~~Ll~~----ga~~~~~~ 87 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA--MLNLHNGQNDTIALLLDV----ARKTDSLK 87 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHH--HHSCBTTBCHHHHHHHHH----HHHTTCHH
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHH--HHHHhcCChHHHHHHHHh----hccccchh
Confidence 489999999999999999999865332 2356799999999 765 999999999994 433
Q ss_pred --hhc----cccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHH
Q 043678 66 --LLQ----VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDL 139 (303)
Q Consensus 66 --~~~----~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~ 139 (303)
++. .+..|.||||+|+..|+.+++++|+++|++++..+..-. ......+..+..|.||||+|+..|+.++
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~----~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 163 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF----FKKTKGRPGFYFGELPLSLAACTNQLAI 163 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGG----GSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccc----cccccccccccCCCCHHHHHHHcCCHHH
Confidence 232 567899999999999999999999999988652211000 0000011122379999999999999999
Q ss_pred HHhHhh---CCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCc
Q 043678 140 FKLKKT---NNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRK 216 (303)
Q Consensus 140 v~~L~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~ 216 (303)
+++|++ .|++ ++..+.. |
T Consensus 164 v~~Ll~~~~~gad-------------------------------------------~~~~d~~----------------g 184 (273)
T 2pnn_A 164 VKFLLQNSWQPAD-------------------------------------------ISARDSV----------------G 184 (273)
T ss_dssp HHHHHHCSSCCCC-------------------------------------------TTCCCTT----------------S
T ss_pred HHHHHhcccCCCC-------------------------------------------ceeeCCC----------------C
Confidence 999887 6665 3333443 4
Q ss_pred ccHHhHHHhcCC---------HHHHHHHhhcCCccc------ccccCCCChHHHHHHHhCCchhhHHHhhcccchhc-cc
Q 043678 217 MTALHLAAGKGD---------ARTVERIISENPKCY------ELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARS-LI 280 (303)
Q Consensus 217 ~t~L~~a~~~~~---------~~~v~~Ll~~g~~~~------~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~-~~ 280 (303)
.||||+|+..|+ .+++++|+++|+++. +.+|..|+||||+|++.|+.+++++|++. |+ |+
T Consensus 185 ~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~----ga~dp 260 (273)
T 2pnn_A 185 NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR----EIHEP 260 (273)
T ss_dssp CCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH----HTC--
T ss_pred CcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC----CCCCc
Confidence 566999999888 799999999999852 35899999999999999999999999885 66 67
Q ss_pred ccCCCCCCcHHH
Q 043678 281 DEGDAKGNTPLH 292 (303)
Q Consensus 281 ~~~d~~g~tpL~ 292 (303)
......+++|-+
T Consensus 261 ~~~~~~~~~~~~ 272 (273)
T 2pnn_A 261 ECRHAAAHHHHH 272 (273)
T ss_dssp ------------
T ss_pred hhhhhhhhhccC
Confidence 877777777654
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-36 Score=231.70 Aligned_cols=187 Identities=21% Similarity=0.170 Sum_probs=168.7
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|++.|.+....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 41 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 114 (231)
T 3aji_A 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA--ASAGXDEIVKALLV----KGAHVNAVNQNGCTPLHYAA 114 (231)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHH--HHcCHHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH
Confidence 4899999999999999999999988777787899999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++.|+++
T Consensus 115 ~~~~~~~~~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------- 165 (231)
T 3aji_A 115 SKNRHEIAVMLLEGGANPD------------------AKDHYDATAMHRAAAKGNLKMVHILLFYKAST----------- 165 (231)
T ss_dssp HTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-----------
T ss_pred HcCCHHHHHHHHHcCCCCC------------------CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-----------
Confidence 9999999999999988754 78899999999999999999999988777653
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
+..+. .|.||||+|+..|+.+++++|+++|++
T Consensus 166 --------------------------------~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 197 (231)
T 3aji_A 166 --------------------------------NIQDT----------------EGNTPLHLACDEERVEEAKFLVTQGAS 197 (231)
T ss_dssp --------------------------------CCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred --------------------------------cccCC----------------CCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence 23333 355779999999999999999999999
Q ss_pred ccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 242 CYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 242 ~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
++.+|..|.||||+|++.++.+++++|.+.
T Consensus 198 -~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~ 227 (231)
T 3aji_A 198 -IYIENKEEKTPLQVAKGGLGLILKRLAEGE 227 (231)
T ss_dssp -SCCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred -CCCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence 589999999999999999998888888774
|
| >4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=218.19 Aligned_cols=158 Identities=23% Similarity=0.314 Sum_probs=140.7
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.++|+.||..|+.++|+.|+++|++++..+..|.||||+| +..++.+++++|++ .|.+++.++..|.||||+|+
T Consensus 5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a--~~~~~~~~~~~ll~----~gad~~~~d~~g~TpLh~A~ 78 (169)
T 4gpm_A 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHA--AENGHKEVVKLLIS----KGADVNAKDSDGRTPLHHAA 78 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHh----cccchhhhccCCCCHHHHHH
Confidence 4689999999999999999999999888888899999999 99999999999998 89999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|++.|++
T Consensus 79 ~~g~~~~v~~Ll~~gadv------------------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad------------ 128 (169)
T 4gpm_A 79 ENGHKEVVKLLISKGADV------------------NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD------------ 128 (169)
T ss_dssp HTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------
T ss_pred HcCCHHHHHHHHHCcCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------
Confidence 999999999999999875 48899999999999999999999998888775
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
++..|. .|.||||+|++.|+.+++++|+++|++
T Consensus 129 -------------------------------~~~~d~----------------~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 129 -------------------------------VNTSDS----------------DGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp -------------------------------TTCCCT----------------TSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred -------------------------------ccccCC----------------CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 333343 345669999999999999999999998
Q ss_pred c
Q 043678 242 C 242 (303)
Q Consensus 242 ~ 242 (303)
+
T Consensus 162 i 162 (169)
T 4gpm_A 162 L 162 (169)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=229.92 Aligned_cols=186 Identities=22% Similarity=0.262 Sum_probs=164.8
Q ss_pred hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHH
Q 043678 29 LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELEN 108 (303)
Q Consensus 29 ~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 108 (303)
.++..|.||||+| +..|+.+++++|++ .|.+++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 6 ~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------- 70 (237)
T 3b7b_A 6 MEHQNKRSPLHAA--AEAGHVDICHMLVQ----AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV--------- 70 (237)
T ss_dssp CSSCCSCCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC---------
T ss_pred cccCCCCCHHHHH--HHcCcHHHHHHHHH----cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC---------
Confidence 5666799999999 99999999999999 79999999999999999999999999999999998774
Q ss_pred HHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCC-cceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHH
Q 043678 109 RIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN-LILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLE 187 (303)
Q Consensus 109 ~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 187 (303)
+..+..|.||||+|+..|+.+++++|++.+ .+
T Consensus 71 ---------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~-------------------------------------- 103 (237)
T 3b7b_A 71 ---------DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD-------------------------------------- 103 (237)
T ss_dssp ---------CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC--------------------------------------
T ss_pred ---------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC--------------------------------------
Confidence 478889999999999999999999977665 22
Q ss_pred hccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhH
Q 043678 188 KKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLR 267 (303)
Q Consensus 188 ~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~ 267 (303)
++..+. .|.||||+|+..|+.+++++|+++|++ ++.++..|.||||+|+..|+.++++
T Consensus 104 -----~~~~~~----------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~ 161 (237)
T 3b7b_A 104 -----VNCQDD----------------GGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAE 161 (237)
T ss_dssp -----TTCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred -----cccCCC----------------CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHHH
Confidence 223333 455779999999999999999999999 5889999999999999999998888
Q ss_pred HHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 268 NLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 268 ~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+|++ .|++++.+|..|.||||+|++.++.++
T Consensus 162 ~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~ 192 (237)
T 3b7b_A 162 ILLA----AKCDLHAVNIHGDSPLHIAARENRYDC 192 (237)
T ss_dssp HHHT----TTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHHH----cCCCCCCcCCCCCCHHHHHHHhCCHhH
Confidence 8887 578899999999999999999987653
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=223.45 Aligned_cols=186 Identities=20% Similarity=0.201 Sum_probs=126.6
Q ss_pred hhHHHHHhcCCChhHHHHHHHHH-HhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVI-ESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
+||+.|+..|+.+.++.|+.++. +....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 7 GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA--VHNNDIEIAKALID----RGADINLQNSISDSPYLYAG 80 (201)
T ss_dssp THHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred cHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH
Confidence 57777777777777777777644 4445555677777777 77777777777777 67777777777777777777
Q ss_pred HhCCHHHHHHHHHHhH-HhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCC-cceeeecccccc
Q 043678 82 KFGHFDIVRVLIERAK-LAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN-LILIFRDSDEKT 159 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~-~~~~~~~~~~~~ 159 (303)
..|+.+++++|++.+. + ++..+..|.||||+|+..|+.+++++|++.+ .+
T Consensus 81 ~~~~~~~~~~Ll~~~~~~------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---------- 132 (201)
T 3hra_A 81 AQGRTEILAYMLKHATPD------------------LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED---------- 132 (201)
T ss_dssp HTTCHHHHHHHHHHSCCC------------------TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC----------
T ss_pred HcCCHHHHHHHHhccCcc------------------cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC----------
Confidence 7777777777775432 2 3466667777777777777777666655444 22
Q ss_pred hhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCC-----HHHHHH
Q 043678 160 NILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGD-----ARTVER 234 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~-----~~~v~~ 234 (303)
++..+.. |.||||+|+..++ .+++++
T Consensus 133 ---------------------------------~~~~~~~----------------g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 133 ---------------------------------IDFQNDF----------------GYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp ---------------------------------TTCCCTT----------------SCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred ---------------------------------cCCCCCC----------------CCCHHHHHHHhccchhhHHHHHHH
Confidence 2333333 3455777777766 777777
Q ss_pred HhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 235 IISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 235 Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
|+++|++ ++.+|..|+||||+|++.|+.+++++|++.
T Consensus 164 Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 164 LMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 7777777 467777777777777777777777777664
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=233.32 Aligned_cols=203 Identities=14% Similarity=0.090 Sum_probs=158.9
Q ss_pred ChhHHHHHhcCCChhH----HHHHHHHHHhhh----hcccCCchhhhhhhhcc---cchhhHHHHHHHHHhCchhhhc--
Q 043678 2 DLNFFKAASAGNSEPF----KDMARDVIESLL----TAKAKNTILHINIISSE---RENVSTKFVEEILEKCPALLLQ-- 68 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v----~~ll~~~~~~~~----~~~~g~t~Lh~A~~~~~---~~~~~~~~Ll~~~~~~~~~~~~-- 68 (303)
.||||.|+..|+.+.| ++|++.|.+... .+..|.||||+| +.. |+.+++++|++ .|.+++.
T Consensus 3 ~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A--~~~~~~g~~~~v~~Ll~----~g~~~~~~~ 76 (256)
T 2etb_A 3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA--VLNLQDGVNACIMPLLQ----IDKDSGNPK 76 (256)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH--HHTCBTTBCTTHHHHHH----HHHHTTCSS
T ss_pred ccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH--HHccccchHHHHHHHHh----cCCcccchh
Confidence 3899999999999855 555567776655 677799999999 888 99999999998 4665553
Q ss_pred ---------cccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHH
Q 043678 69 ---------VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDL 139 (303)
Q Consensus 69 ---------~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~ 139 (303)
.|..|.||||+|+..|+.+++++|+++|++++..+..-. +....+..+..|.||||+|+..|+.++
T Consensus 77 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~-----~~~~~~~~~~~g~tpL~~A~~~~~~~~ 151 (256)
T 2etb_A 77 PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF-----FQKHQGTCFYFGELPLSLAACTKQWDV 151 (256)
T ss_dssp CGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG-----GSCCSSSCCCSCSSHHHHHHHTTCHHH
T ss_pred hhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccc-----ccccccccccCCCCHHHHHHHcCCHHH
Confidence 346799999999999999999999999988652211000 000001112239999999999999999
Q ss_pred HHhHhh---CCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCc
Q 043678 140 FKLKKT---NNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRK 216 (303)
Q Consensus 140 v~~L~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~ 216 (303)
+++|++ .|++ ++..|.. |
T Consensus 152 v~~Ll~~~~~ga~-------------------------------------------~n~~d~~----------------g 172 (256)
T 2etb_A 152 VTYLLENPHQPAS-------------------------------------------LEATDSL----------------G 172 (256)
T ss_dssp HHHHHHCSSCCCC-------------------------------------------TTCCCTT----------------S
T ss_pred HHHHHhccccCCC-------------------------------------------cCccCCC----------------C
Confidence 999887 6665 3344443 4
Q ss_pred ccHHhHHHh--cCCHH-------HHHHHhhcCCccc------ccccCCCChHHHHHHHhCCchhhHHHhhccc
Q 043678 217 MTALHLAAG--KGDAR-------TVERIISENPKCY------ELVDNRGWNFLHYAMVSFHVGQLRNLLENNS 274 (303)
Q Consensus 217 ~t~L~~a~~--~~~~~-------~v~~Ll~~g~~~~------~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~ 274 (303)
.||||+|+. .++.+ ++++|+++|+++. +.+|..|+||||+|++.|+.+++++|++.+.
T Consensus 173 ~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 173 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp CCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 566999998 78888 9999999999831 8899999999999999999999999998643
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-35 Score=225.61 Aligned_cols=186 Identities=24% Similarity=0.239 Sum_probs=158.8
Q ss_pred CCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHh
Q 043678 34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAF 113 (303)
Q Consensus 34 g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 113 (303)
|.||||+| +..|+.+++++|++. .+...+..+..|.||||+|+..|+.+++++|++.|++.+
T Consensus 2 g~t~L~~A--~~~g~~~~v~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~------------- 63 (228)
T 2dzn_A 2 SNYPLHQA--CMENEFFKVQELLHS---KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN------------- 63 (228)
T ss_dssp -CCHHHHH--HHTTCHHHHHHHHHH---CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC-------------
T ss_pred CccHHHHH--HHhCCHHHHHHHHhc---CccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc-------------
Confidence 78999999 999999999999983 444455689999999999999999999999999995543
Q ss_pred hhhhcc-ccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 114 RQMIRM-VNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 114 ~~~~~~-~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
++. .+..|.||||+|+..|+.+++++|++.|... .
T Consensus 64 ---~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-----------------------------------------~ 99 (228)
T 2dzn_A 64 ---LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-----------------------------------------D 99 (228)
T ss_dssp ---GGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCC-----------------------------------------C
T ss_pred ---ccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-----------------------------------------c
Confidence 334 7889999999999999999999988776210 0
Q ss_pred hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 193 ~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
++..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++.
T Consensus 100 ~~~~~~----------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 162 (228)
T 2dzn_A 100 LNKITN----------------QGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGL 162 (228)
T ss_dssp TTCCCT----------------TCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred cccCCc----------------CCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 222333 455779999999999999999999999 589999999999999999999999988885
Q ss_pred ccchh-cccccCCCCCCcHHHHHHhcCCCCC
Q 043678 273 NSLAR-SLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 273 ~~~~~-~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
| ++++.+|..|+||||+|++.++.++
T Consensus 163 ----g~~~~~~~d~~g~t~L~~A~~~~~~~~ 189 (228)
T 2dzn_A 163 ----GKSAVNWQDKQGWTPLFHALAEGHGDA 189 (228)
T ss_dssp ----TCCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred ----CcccccCcCCCCCCHHHHHHHcCCHHH
Confidence 5 7899999999999999999988654
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=233.33 Aligned_cols=215 Identities=16% Similarity=0.092 Sum_probs=168.2
Q ss_pred hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhh----ccccCCCcHHHHHHHh---CCHHHHHHHHHHhHHhhc
Q 043678 29 LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLL----QVNAKGDTPLHLAAKF---GHFDIVRVLIERAKLAQR 101 (303)
Q Consensus 29 ~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~----~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~ 101 (303)
..+..|.||||+| +..|+.++++.|++.....+..++ ..+..|.||||+|+.. |+.+++++|++.|++...
T Consensus 8 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~ 85 (273)
T 2pnn_A 8 PPRLYDRRSIFDA--VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85 (273)
T ss_dssp ---CCCHHHHHHH--HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred CCCcccchHHHHH--HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence 4566699999999 999999999999987666676665 4588999999999987 999999999999987431
Q ss_pred CchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHH
Q 043678 102 GDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAA 181 (303)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (303)
... .........|..|.||||+|+..|+.+++++|++.|++++..+..+....
T Consensus 86 ~~~-------~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~-------------------- 138 (273)
T 2pnn_A 86 LKQ-------FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKK-------------------- 138 (273)
T ss_dssp HHH-------HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSS--------------------
T ss_pred hhH-------HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccccc--------------------
Confidence 100 00111223677999999999999999999999999998777666442100
Q ss_pred HHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhh---cCCcccccccCCCChHHHHHH
Q 043678 182 LPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS---ENPKCYELVDNRGWNFLHYAM 258 (303)
Q Consensus 182 ~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~---~g~~~~~~~~~~g~tpl~~A~ 258 (303)
.... .....|.||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+
T Consensus 139 ---------~~~~----------------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~ 192 (273)
T 2pnn_A 139 ---------TKGR----------------PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALV 192 (273)
T ss_dssp ---------CSSS----------------CCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHH
T ss_pred ---------cccc----------------ccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHH
Confidence 0001 111257788999999999999999999 8999 5899999999999999
Q ss_pred HhCC---------chhhHHHhhcccchhcccc-------cCCCCCCcHHHHHHhcCCCCC
Q 043678 259 VSFH---------VGQLRNLLENNSLARSLID-------EGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 259 ~~~~---------~~~~~~ll~~~~~~~~~~~-------~~d~~g~tpL~~A~~~~~~~i 302 (303)
..++ .+++++|++ .|++++ .+|..|+||||+|++.|+.++
T Consensus 193 ~~~~~~~~~~~~~~~~v~~Ll~----~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~i 248 (273)
T 2pnn_A 193 EVADNTVDNTKFVTSMYNEILI----LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGV 248 (273)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHH----HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred HccCcchhHHHHHHHHHHHHHH----hhhhcccccccccccCCCCCCHHHHHHHhChHHH
Confidence 9887 456666666 677786 589999999999999998764
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=244.60 Aligned_cols=243 Identities=15% Similarity=0.132 Sum_probs=171.3
Q ss_pred CCChhHHHHHHHHHHhhhh-----------------cccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhc-cccCC
Q 043678 12 GNSEPFKDMARDVIESLLT-----------------AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQ-VNAKG 73 (303)
Q Consensus 12 g~~~~v~~ll~~~~~~~~~-----------------~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~g 73 (303)
|+.++|+.|+++|+++... .....+.+|.| +..+..+++++|++ .|.+++. ++..|
T Consensus 58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~l~~----~g~dvn~~~d~~g 131 (327)
T 1sw6_A 58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVS--FDSLLQEVNDAFPN----TQLNLNIPVDEHG 131 (327)
T ss_dssp HHHHHHHHHHHHHHC-------------------------------C--HHHHHHHHHHHCTT----SCCCSCSCCSTTC
T ss_pred chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHH--HHhhHHHHHHHHHh----cCCCcccccCCCC
Confidence 8899999999998764320 00112234666 66666666666666 8999999 89999
Q ss_pred CcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCc---HHHHHhHhhCC-cc
Q 043678 74 DTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGN---VDLFKLKKTNN-LI 149 (303)
Q Consensus 74 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~---~~~v~~L~~~~-~~ 149 (303)
.||||+|+..|+.++|++|+++|++++ .+|..|+||||+|+..|+ .++++.|++.+ .+
T Consensus 132 ~TpLh~Aa~~g~~~~v~~Ll~~Gad~n------------------~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~ 193 (327)
T 1sw6_A 132 NTPLHWLTSIANLELVKHLVKHGSNRL------------------YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 193 (327)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTT------------------BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCC------------------CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc
Confidence 999999999999999999999998754 889999999999999998 67777777665 67
Q ss_pred eeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccc----cc-cccccCCcccHHhHHH
Q 043678 150 LIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQS----TS-NIADKDRKMTALHLAA 224 (303)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~----~~-~~~~~~~~~t~L~~a~ 224 (303)
+...+..|.++++++...... ....++++.|++.+........ +....+. .+ .......|.||||.|+
T Consensus 194 ~~~~d~~g~tpLh~A~~~~~~-----~g~~~~v~~Ll~~~~~~~~~~~--~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~ 266 (327)
T 1sw6_A 194 LILEDSMNRTILHHIIITSGM-----TGCSAAAKYYLDILMGWIVKKQ--NRPIQSGTNEKESKPNDKNGERKDSILENL 266 (327)
T ss_dssp GGEECTTCCCHHHHHHHHHTS-----TTCHHHHHHHHHHHHHHHHHGG--GCCEEEC----------------CHHHHHC
T ss_pred ccCCCCCCCCHHHHHHHHccc-----cccHHHHHHHHHHHHHHHhccc--chHHHhhhhcccCCcccccccCCChhHHHH
Confidence 889999999999988642110 1225677777766543211100 0000000 00 1111236778899988
Q ss_pred hcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcC
Q 043678 225 GKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVR 298 (303)
Q Consensus 225 ~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~ 298 (303)
. +++|+++ + ++.+|..|+||||+|++.|+.+++++|++ .|++++.+|..|+||||+|++.|
T Consensus 267 ~------~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~----~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 267 D------LKWIIAN--M-LNAQDSNGDTCLNIAARLGNISIVDALLD----YGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp S------HHHHHHH--T-TTCCCTTSCCHHHHHHHHCCHHHHHHHHH----TTCCTTCCCTTSCCGGGGTCC--
T ss_pred H------HHHHHHh--C-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHhcC
Confidence 5 8999998 3 57799999999999999999999998887 58899999999999999999865
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=219.46 Aligned_cols=183 Identities=19% Similarity=0.245 Sum_probs=158.9
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
.+.||||.| +..|+.+.++.|+. ..+.+++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 4 ~~~~~L~~A--~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------ 66 (201)
T 3hra_A 4 YEVGALLEA--ANQRDTKKVKEILQ---DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN------------ 66 (201)
T ss_dssp CCTTHHHHH--HHTTCHHHHHHHHT---CTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------------
T ss_pred ccccHHHHH--HHhccHHHHHHHHH---cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------
Confidence 389999999 99999999999987 2445899999999999999999999999999999998754
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHh-hCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccc
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKK-TNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKN 191 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 191 (303)
..+..|.||||+|+..|+.+++++|+ ..+.+
T Consensus 67 ------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~------------------------------------------ 98 (201)
T 3hra_A 67 ------LQNSISDSPYLYAGAQGRTEILAYMLKHATPD------------------------------------------ 98 (201)
T ss_dssp ------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC------------------------------------------
T ss_pred ------CCCCCCCCHHHHHHHcCCHHHHHHHHhccCcc------------------------------------------
Confidence 78899999999999999999988865 33222
Q ss_pred hhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcC-CcccccccCCCChHHHHHHHhCC-----chh
Q 043678 192 LIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISEN-PKCYELVDNRGWNFLHYAMVSFH-----VGQ 265 (303)
Q Consensus 192 ~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~tpl~~A~~~~~-----~~~ 265 (303)
++..+..| .||||+|+..|+.+++++|+++| ++ ++.+|..|+||||+|+..++ .++
T Consensus 99 -~~~~~~~g----------------~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 99 -LNKHNRYG----------------GNALIPAAEKGHIDNVKLLLEDGRED-IDFQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp -TTCCCTTS----------------CCSHHHHHHTTCHHHHHHHHHHCCCC-TTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred -cccccCCC----------------CcHHHHHHHcCCHHHHHHHHHcCCCC-cCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence 34444444 45599999999999999999999 56 68999999999999999988 778
Q ss_pred hHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 266 LRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 266 ~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+++|++ .|++++.+|..|+||||+|++.|+.++
T Consensus 161 v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~~~~ 193 (201)
T 3hra_A 161 VKLLME----NGADQSIKDNSGRTAMDYANQKGYTEI 193 (201)
T ss_dssp HHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHhH
Confidence 888887 578899999999999999999998764
|
| >4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-36 Score=235.50 Aligned_cols=176 Identities=19% Similarity=0.219 Sum_probs=141.1
Q ss_pred hhHHHHHhcCCC-hhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 3 LNFFKAASAGNS-EPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 3 ~~L~~A~~~g~~-~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
+||+.|+..++. .++++|++.|++++..+..|.||||+| +..|+.+++++|++ .+.+++..+..|.||+|+|+
T Consensus 54 t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A--~~~g~~~~v~~Ll~----~~a~~~~~~~~g~t~l~~a~ 127 (269)
T 4b93_B 54 HPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVA--ALHGRADLIPLLLK----HGANAGARNADQAVPLHLAC 127 (269)
T ss_dssp ---------------------CCCCTTCCCTTSCCHHHHH--HHTTCTTHHHHHHH----TTCCTTCCCTTCCCHHHHHH
T ss_pred CHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHcCcHHHHHHHHh----cCCCcCccCCCCCCcccccc
Confidence 789999988876 488999999998888888899999999 99999999999998 89999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..++.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.|++
T Consensus 128 ~~~~~~~~~~Ll~~g~~~------------------n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad------------ 177 (269)
T 4b93_B 128 QQGHFQVVKCLLDSNAKP------------------NKKDLSGNTPLIYACSGGHHELVALLLQHGAS------------ 177 (269)
T ss_dssp HHTCHHHHHHHHHTTCCS------------------CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC------------
T ss_pred ccChHHHHHHHHHCCCCC------------------CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC------------
Confidence 999999999999999874 48899999999999999999999998887775
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
++..+. .|.||||+|+..|+.+++++|+++|++
T Consensus 178 -------------------------------vn~~~~----------------~g~t~Lh~A~~~g~~~~v~~Ll~~Gad 210 (269)
T 4b93_B 178 -------------------------------INASNN----------------KGNTALHEAVIEKHVFVVELLLLHGAS 210 (269)
T ss_dssp -------------------------------TTCBCT----------------TSCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred -------------------------------CCcccc----------------CCCcHHHHHHHcCCHHHHHHHHHCCCC
Confidence 333333 345779999999999999999999999
Q ss_pred ccccccCCCChHHHHHHHhCC
Q 043678 242 CYELVDNRGWNFLHYAMVSFH 262 (303)
Q Consensus 242 ~~~~~~~~g~tpl~~A~~~~~ 262 (303)
++.+|..|+||||+|+++++
T Consensus 211 -~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 211 -VQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp -SCCCCTTSCCSGGGSCTTCH
T ss_pred -CCCcCCCCCCHHHHHHhCCc
Confidence 59999999999999988765
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=230.67 Aligned_cols=211 Identities=19% Similarity=0.115 Sum_probs=167.5
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccc----cCCCcHHHHHH---HhCCHHHHHHHHHHhHHhhcCchH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVN----AKGDTPLHLAA---KFGHFDIVRVLIERAKLAQRGDEE 105 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~----~~g~tpL~~A~---~~~~~~~v~~Ll~~~~~~~~~~~~ 105 (303)
.|.|+||.| +..|+.+.++.|++++...+.+++..+ ..|.||||+|+ ..|+.+++++|++.|++......
T Consensus 4 ~~~~~L~~A--~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~- 80 (260)
T 3jxi_A 4 FNRPILFDI--VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE- 80 (260)
T ss_dssp CCHHHHHHH--HHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH-
T ss_pred chHHHHHHH--HHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh-
Confidence 488999999 999999998888887777788888776 66999999999 67999999999999987531110
Q ss_pred HHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHH
Q 043678 106 LENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKL 185 (303)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (303)
.....++..|..|+||||+|+..|+.+++++|++.|++++..+..+..
T Consensus 81 ------~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~-------------------------- 128 (260)
T 3jxi_A 81 ------FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF-------------------------- 128 (260)
T ss_dssp ------HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCC--------------------------
T ss_pred ------hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccccc--------------------------
Confidence 011224456669999999999999999999999999887666543211
Q ss_pred HHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhh---cCCcccccccCCCChHHHHHHHhCC
Q 043678 186 LEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS---ENPKCYELVDNRGWNFLHYAMVSFH 262 (303)
Q Consensus 186 l~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~---~g~~~~~~~~~~g~tpl~~A~~~~~ 262 (303)
...+..+.. ..|.||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+..++
T Consensus 129 --------~~~~~~~~~-----------~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~ 188 (260)
T 3jxi_A 129 --------QPKDEGGYF-----------YFGELPLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIAD 188 (260)
T ss_dssp --------SSSCCCCSC-----------CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCC
T ss_pred --------Ccccccccc-----------cCCCCHHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhcc
Confidence 011111111 267788999999999999999999 8999 58999999999999998877
Q ss_pred ---------chhhHHHhhcccchhccc-------ccCCCCCCcHHHHHHhcCCCCC
Q 043678 263 ---------VGQLRNLLENNSLARSLI-------DEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 263 ---------~~~~~~ll~~~~~~~~~~-------~~~d~~g~tpL~~A~~~~~~~i 302 (303)
.++++.|++ .|+++ +.+|..|+||||+|++.|+.++
T Consensus 189 ~~~~~~~~~~~~v~~Ll~----~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~ 240 (260)
T 3jxi_A 189 NTRENTKFVTKMYDLLLI----KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240 (260)
T ss_dssp SSHHHHHHHHHHHHHHHH----HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred CchhHHHHHHHHHHHHHH----hCcccccccchhhcccCCCCCHHHHHHHcCCHHH
Confidence 456666655 67777 7799999999999999998764
|
| >4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=210.97 Aligned_cols=159 Identities=24% Similarity=0.276 Sum_probs=138.5
Q ss_pred chhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhh
Q 043678 36 TILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQ 115 (303)
Q Consensus 36 t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~ 115 (303)
+.|+.| ++.|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|++.|++++
T Consensus 6 ~~L~~A--a~~G~~~~v~~Ll~----~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~--------------- 64 (169)
T 4gpm_A 6 KRLIEA--AENGNKDRVKDLIE----NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN--------------- 64 (169)
T ss_dssp HHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------
T ss_pred HHHHHH--HHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh---------------
Confidence 368999 99999999999999 899999999999999999999999999999999998754
Q ss_pred hhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhch
Q 043678 116 MIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKE 195 (303)
Q Consensus 116 ~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 195 (303)
.+|..|+||||+|+..|+.+++++|++.|++ ++.
T Consensus 65 ---~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-------------------------------------------vn~ 98 (169)
T 4gpm_A 65 ---AKDSDGRTPLHHAAENGHKEVVKLLISKGAD-------------------------------------------VNA 98 (169)
T ss_dssp ---CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------------------------------------------TTC
T ss_pred ---hhccCCCCHHHHHHHcCCHHHHHHHHHCcCC-------------------------------------------CCC
Confidence 8899999999999999999999998888775 333
Q ss_pred hhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccc
Q 043678 196 TDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSL 275 (303)
Q Consensus 196 ~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~ 275 (303)
++.+ |.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|++.|+.+++++|++
T Consensus 99 ~d~~----------------G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~---- 157 (169)
T 4gpm_A 99 KDSD----------------GRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLLEK---- 157 (169)
T ss_dssp CCTT----------------SCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHT----
T ss_pred CCCC----------------CCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHH----
Confidence 4443 45669999999999999999999999 58999999999999999999999888888
Q ss_pred hhccccc
Q 043678 276 ARSLIDE 282 (303)
Q Consensus 276 ~~~~~~~ 282 (303)
.|++++.
T Consensus 158 ~GA~ie~ 164 (169)
T 4gpm_A 158 QGGWLEH 164 (169)
T ss_dssp C------
T ss_pred CCCCcCC
Confidence 4666653
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=227.69 Aligned_cols=194 Identities=17% Similarity=0.195 Sum_probs=156.9
Q ss_pred ChhHHHHHhcCCChhHHHHHH----HHHHhhhhc----ccCCchhhhhhhh---cccchhhHHHHHHHHHhCc-------
Q 043678 2 DLNFFKAASAGNSEPFKDMAR----DVIESLLTA----KAKNTILHINIIS---SERENVSTKFVEEILEKCP------- 63 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~----~~~~~~~~~----~~g~t~Lh~A~~~---~~~~~~~~~~Ll~~~~~~~------- 63 (303)
.++||.|+..|+.+.++.|++ .+.+....+ ..|.||||+| + ..|+.+++++|++.-...+
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKA--LLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHH--HTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHH--HHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 379999999999997776666 555544333 5599999999 6 7899999999999422111
Q ss_pred hhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhcccc--------------CCCccHHH
Q 043678 64 ALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVN--------------NEKNTALH 129 (303)
Q Consensus 64 ~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~t~l~ 129 (303)
...+..+..|.||||+|+..|+.+++++|+++|++++ ..+ ..|.||||
T Consensus 84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------------------~~~~~~~~~~~~~~~~~~~g~tpL~ 145 (260)
T 3jxi_A 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH------------------AQARGRFFQPKDEGGYFYFGELPLS 145 (260)
T ss_dssp CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT------------------CCCEECCCSSSCCCCSCCSCSSHHH
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC------------------ccccccccCcccccccccCCCCHHH
Confidence 2234455689999999999999999999999998865 455 68999999
Q ss_pred HHHhcCcHHHHHhHhh---CCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccc
Q 043678 130 EAVSHGNVDLFKLKKT---NNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQS 206 (303)
Q Consensus 130 ~A~~~~~~~~v~~L~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~ 206 (303)
+|+..|+.+++++|++ .|++ ++..|..
T Consensus 146 ~A~~~g~~~~v~~Ll~~~~~ga~-------------------------------------------~~~~d~~------- 175 (260)
T 3jxi_A 146 LAACTNQPHIVHYLTENGHKQAD-------------------------------------------LRRQDSR------- 175 (260)
T ss_dssp HHHHTTCHHHHHHHHHCSSCCCC-------------------------------------------TTCCCTT-------
T ss_pred HHHHcCCHHHHHHHHhccccCCC-------------------------------------------CcccCCC-------
Confidence 9999999999999887 6665 3344443
Q ss_pred cccccccCCcccHHhHHHhcCC---------HHHHHHHhhcCCccc------ccccCCCChHHHHHHHhCCchhhHHHhh
Q 043678 207 TSNIADKDRKMTALHLAAGKGD---------ARTVERIISENPKCY------ELVDNRGWNFLHYAMVSFHVGQLRNLLE 271 (303)
Q Consensus 207 ~~~~~~~~~~~t~L~~a~~~~~---------~~~v~~Ll~~g~~~~------~~~~~~g~tpl~~A~~~~~~~~~~~ll~ 271 (303)
|.||||+|+..++ .+++++|+++|+++. +.+|..|+||||+|++.|+.+++++|++
T Consensus 176 ---------g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~ 246 (260)
T 3jxi_A 176 ---------GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246 (260)
T ss_dssp ---------SCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ---------CCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4566999998777 799999999999842 6799999999999999999999999999
Q ss_pred ccc
Q 043678 272 NNS 274 (303)
Q Consensus 272 ~~~ 274 (303)
.+.
T Consensus 247 ~g~ 249 (260)
T 3jxi_A 247 REI 249 (260)
T ss_dssp HHH
T ss_pred hCC
Confidence 643
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=230.90 Aligned_cols=235 Identities=19% Similarity=0.129 Sum_probs=189.1
Q ss_pred HHHhcCCChhHHHHHHHHHHhh---------hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHH
Q 043678 7 KAASAGNSEPFKDMARDVIESL---------LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPL 77 (303)
Q Consensus 7 ~A~~~g~~~~v~~ll~~~~~~~---------~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL 77 (303)
.++..|..+.++.++....... ..+..|.||||.| +..|+.+++++|++ .|.+++..+..|.|||
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L 77 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAA--CSSGDTEEVLRLLE----RGADINYANVDGLTAL 77 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHH--HHHTCHHHHHHHHH----HCCCTTCBCTTCCBHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHH--HHcCCHHHHHHHHH----cCCCCcccCCCCCCHH
Confidence 4677788888888887733211 1122467999999 99999999999998 6899999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccc
Q 043678 78 HLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDE 157 (303)
Q Consensus 78 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~ 157 (303)
|+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|++.|+++...+..|
T Consensus 78 ~~A~~~g~~~~v~~Ll~~ga~~~------------------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g 139 (299)
T 1s70_B 78 HQACIDDNVDMVKFLVENGANIN------------------QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139 (299)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred HHHHHcCCHHHHHHHHHCCCCCC------------------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCC
Confidence 99999999999999999998754 788999999999999999999999999999999999999
Q ss_pred cchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhh
Q 043678 158 KTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS 237 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~ 237 (303)
.++++.+... ...++++.++...+..++.....+. ++++ ..+..++.
T Consensus 140 ~t~l~~A~~~---------~~~~~~~~ll~~~~~~~~~~~~~~~----------------~~~~--------~~~~~~l~ 186 (299)
T 1s70_B 140 DTPLDIAEEE---------AMEELLQNEVNRQGVDIEAARKEEE----------------RIML--------RDARQWLN 186 (299)
T ss_dssp CCHHHHCCSH---------HHHHHHHHHHHHHTCCHHHHHHHHH----------------HHHH--------HHHHHHHH
T ss_pred CCHHHHHHhc---------chHHHHHHHHhhcCCCchhhhhhhh----------------hHHH--------HHHHHHHh
Confidence 9998887643 2256777777665544443333221 1222 23455666
Q ss_pred cCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 238 ENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 238 ~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
.+.......+..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.++
T Consensus 187 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~d~~~~d~~g~tpL~~A~~~~~~~~ 247 (299)
T 1s70_B 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ----ARYDVNIKDYDGWTPLHAAAHWGKEEA 247 (299)
T ss_dssp HTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT----TTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred ccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHhcCCHHH
Confidence 6665556677899999999999999999988887 578899999999999999999998654
|
| >4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=222.03 Aligned_cols=184 Identities=19% Similarity=0.182 Sum_probs=123.3
Q ss_pred CCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhH-HhhcCchHHHHHHHH
Q 043678 34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAK-LAQRGDEELENRIEA 112 (303)
Q Consensus 34 g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~~~~ 112 (303)
..+++|.| +..++.+.++.++... ....++.+|..|.||||+|+..|+.+++++|++.|+ ++
T Consensus 76 ~~~~l~~a--~~~~~~~~~~~l~~~~--~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~------------- 138 (276)
T 4hbd_A 76 CRSDAHPE--LVRRHLVTFRAMSARL--LDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV------------- 138 (276)
T ss_dssp HSTTCCHH--HHHHHHHHHHHHCHHH--HHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT-------------
T ss_pred hccCCCHH--HHHHHHHHHHHHHHHH--HhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-------------
Confidence 56677777 7777777777776521 122366677777777777777777777777777776 43
Q ss_pred hhhhhccccCCCccHHHHHH-----hcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHH
Q 043678 113 FRQMIRMVNNEKNTALHEAV-----SHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLE 187 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~-----~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 187 (303)
+..+..|.||||+|+ ..++.+++++|+..|..
T Consensus 139 -----~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~-------------------------------------- 175 (276)
T 4hbd_A 139 -----DKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI-------------------------------------- 175 (276)
T ss_dssp -----TCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT--------------------------------------
T ss_pred -----CCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC--------------------------------------
Confidence 366777777777777 55667777776655532
Q ss_pred hccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhH
Q 043678 188 KKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLR 267 (303)
Q Consensus 188 ~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~ 267 (303)
.+..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.++++
T Consensus 176 -----~~~~~~----------------~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 176 -----NAKASQ----------------AGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp -----TCCCTT----------------TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred -----ccccCC----------------CCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 122222 234557777777777777777777777 4677777777777777777777666
Q ss_pred HHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 268 NLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 268 ~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+|++. .|++++.+|..|+||||+|++.|+.++
T Consensus 234 ~Ll~~---~gad~~~~d~~g~TpL~~A~~~g~~~i 265 (276)
T 4hbd_A 234 LLLAV---PSCDISLTDRDGSTALMVALDAGQSEI 265 (276)
T ss_dssp HHHTS---TTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHhc---CCCCCcCcCCCCCCHHHHHHHcCCHHH
Confidence 66663 466677777777777777777776543
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=233.38 Aligned_cols=198 Identities=15% Similarity=0.096 Sum_probs=154.4
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhhh-hcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHh
Q 043678 5 FFKAASAGNSEPFKDMARDVIESLL-TAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF 83 (303)
Q Consensus 5 L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~ 83 (303)
++.|+..+..++++.|++.|++.+. .+..|.||||+| +..|+.+++++|++ .|++++.++..|.||||+|+..
T Consensus 101 ~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~A--a~~g~~~~v~~Ll~----~Gad~n~~d~~g~TpLh~A~~~ 174 (327)
T 1sw6_A 101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWL--TSIANLELVKHLVK----HGSNRLYGDNMGESCLVKAVKS 174 (327)
T ss_dssp ---CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTBCCTTCCCHHHHHHHS
T ss_pred hHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHh
Confidence 3556666667888888888888777 788899999999 99999999999999 8999999999999999999999
Q ss_pred CC---HHHHHHHHHHh-HHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHh----cCcHHHHHhHhhC---------
Q 043678 84 GH---FDIVRVLIERA-KLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVS----HGNVDLFKLKKTN--------- 146 (303)
Q Consensus 84 ~~---~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~----~~~~~~v~~L~~~--------- 146 (303)
|+ .++++.|++.+ ++ ++.+|..|+||||+|+. .|+.+++++|++.
T Consensus 175 g~~~~~~~~~~ll~~~~~~------------------~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~ 236 (327)
T 1sw6_A 175 VNNYDSGTFEALLDYLYPC------------------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 236 (327)
T ss_dssp SHHHHTTCHHHHHHHHGGG------------------GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGG
T ss_pred cccccHHHHHHHHHhhhcc------------------ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhccc
Confidence 98 78899999887 33 55899999999999999 8999999998766
Q ss_pred -----------CcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCC
Q 043678 147 -----------NLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDR 215 (303)
Q Consensus 147 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~ 215 (303)
+++++..+..|.++++.+.. +++|+... ++..+. .
T Consensus 237 ~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~---------------~~~Ll~~~---~n~~d~----------------~ 282 (327)
T 1sw6_A 237 NRPIQSGTNEKESKPNDKNGERKDSILENLD---------------LKWIIANM---LNAQDS----------------N 282 (327)
T ss_dssp GCCEEEC----------------CHHHHHCS---------------HHHHHHHT---TTCCCT----------------T
T ss_pred chHHHhhhhcccCCcccccccCCChhHHHHH---------------HHHHHHhC---CCCCCC----------------C
Confidence 56666666666666665541 45555541 344444 4
Q ss_pred cccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhC
Q 043678 216 KMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSF 261 (303)
Q Consensus 216 ~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~ 261 (303)
|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|++.|
T Consensus 283 G~TpLh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 283 GDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp SCCHHHHHHHHCCHHHHHHHHHTTCC-TTCCCTTSCCGGGGTCC--
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcC
Confidence 56779999999999999999999999 5999999999999998764
|
| >4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-33 Score=219.38 Aligned_cols=186 Identities=20% Similarity=0.190 Sum_probs=165.7
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHH--hhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCch-hhhccccCCCcHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIE--SLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPA-LLLQVNAKGDTPLHL 79 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~-~~~~~~~~g~tpL~~ 79 (303)
++++.|+..|+.+.++.+++.+.+ .+..|..|.||||+| +..|+.+++++|++ .|. +++..+..|.||||+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~tpL~~ 151 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYS--VSHANFPVVQQLLD----SGVCKVDKQNRAGYSPIML 151 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TSCCCTTCCCTTSCCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHH--HHCCCHHHHHHHHH----CCCCcCCCCCCCCCCHHHH
Confidence 578899999999999999999665 557778899999999 99999999999999 676 999999999999999
Q ss_pred HH-----HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeec
Q 043678 80 AA-----KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRD 154 (303)
Q Consensus 80 A~-----~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~ 154 (303)
|+ ..++.+++++|++.|... +..+..|.||||+|+..|+.+++++|++.|++
T Consensus 152 a~~~~~~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad----- 208 (276)
T 4hbd_A 152 TALATLKTQDDIETVLQLFRLGNIN------------------AKASQAGQTALMLAVSHGRVDVVKALLACEAD----- 208 (276)
T ss_dssp GGGCCCCSHHHHHHHHHHHHHSCTT------------------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----
T ss_pred HHHHHhhhhhhHHHHHHHHHcCCCc------------------cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-----
Confidence 99 668899999999999764 47888999999999999999999998877775
Q ss_pred ccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHH
Q 043678 155 SDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVER 234 (303)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~ 234 (303)
++..|. .|.||||+|+..|+.+++++
T Consensus 209 --------------------------------------~n~~d~----------------~G~TpLh~A~~~g~~~iv~~ 234 (276)
T 4hbd_A 209 --------------------------------------VNVQDD----------------DGSTALMCACEHGHKEIAGL 234 (276)
T ss_dssp --------------------------------------TTCCCT----------------TSCCHHHHHHHHTCHHHHHH
T ss_pred --------------------------------------CCCCCC----------------CCCCHHHHHHHCCCHHHHHH
Confidence 334444 45566999999999999999
Q ss_pred Hhh-cCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 235 IIS-ENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 235 Ll~-~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
|++ .|++ ++.+|..|+||||+|+..|+.+++++|++.
T Consensus 235 Ll~~~gad-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 235 LLAVPSCD-ISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp HHTSTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhcCCCC-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 999 8998 589999999999999999999999999986
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.5e-32 Score=200.18 Aligned_cols=170 Identities=19% Similarity=0.186 Sum_probs=140.4
Q ss_pred CCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHh
Q 043678 34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAF 113 (303)
Q Consensus 34 g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 113 (303)
+.||||+| +..|+.+++++|++. .+..++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 2 ~~~~L~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------- 63 (172)
T 3v30_A 2 DSLSIHQL--AAQGELDQLKEHLRK---GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH------------- 63 (172)
T ss_dssp --CCHHHH--HHTTCHHHHHHHHTT---CSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-------------
T ss_pred chhhHHHH--HHcCCHHHHHHHHHc---CcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-------------
Confidence 57899999 999999999999882 444488899999999999999999999999999988754
Q ss_pred hhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchh
Q 043678 114 RQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLI 193 (303)
Q Consensus 114 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 193 (303)
..+..|.||||+|+..++.+++++|++.|++ +
T Consensus 64 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------------------------------~ 95 (172)
T 3v30_A 64 -----ILAKERESALSLASTGGYTDIVGLLLERDVD-------------------------------------------I 95 (172)
T ss_dssp -----CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-------------------------------------------T
T ss_pred -----hhcccCCCHHHHHHHCCCHHHHHHHHHcCCC-------------------------------------------C
Confidence 7888999999999999999999998877765 2
Q ss_pred chhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcc
Q 043678 194 KETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273 (303)
Q Consensus 194 ~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~ 273 (303)
+..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++
T Consensus 96 ~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~-- 156 (172)
T 3v30_A 96 NIYDW----------------NGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIEN-- 156 (172)
T ss_dssp TCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH--
T ss_pred CCCCC----------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHH--
Confidence 23333 455779999999999999999999999 58899999999999999999888888888
Q ss_pred cchhcccccCCCCCCcH
Q 043678 274 SLARSLIDEGDAKGNTP 290 (303)
Q Consensus 274 ~~~~~~~~~~d~~g~tp 290 (303)
.++++...+..|.||
T Consensus 157 --~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 157 --HILKLFQSNLVPADP 171 (172)
T ss_dssp --HHHHHSCC-------
T ss_pred --HHHHHhcccCCCCCC
Confidence 467788888888887
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=202.18 Aligned_cols=160 Identities=14% Similarity=0.089 Sum_probs=139.6
Q ss_pred hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHH
Q 043678 29 LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELEN 108 (303)
Q Consensus 29 ~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 108 (303)
..+..|.||||+| +..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 30 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------- 94 (192)
T 2rfm_A 30 YRDSYNRTPLMVA--CMLGMENAIDKLVE----NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV--------- 94 (192)
T ss_dssp CCCTTCCCHHHHH--HHHTCGGGHHHHHH----HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT---------
T ss_pred CcCCCCCCHHHHH--HHcCCHHHHHHHHH----hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC---------
Confidence 5677799999999 99999999999998 57888999999999999999999999999999998774
Q ss_pred HHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHh
Q 043678 109 RIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEK 188 (303)
Q Consensus 109 ~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 188 (303)
+..|..|.||||+|+..++.+++++|++.|+++
T Consensus 95 ---------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------------------------------------- 127 (192)
T 2rfm_A 95 ---------NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV-------------------------------------- 127 (192)
T ss_dssp ---------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS--------------------------------------
T ss_pred ---------CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC--------------------------------------
Confidence 478889999999999999999999988777652
Q ss_pred ccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHH
Q 043678 189 KKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRN 268 (303)
Q Consensus 189 ~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ 268 (303)
+..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++
T Consensus 128 -----~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~v~~ 185 (192)
T 2rfm_A 128 -----NDRNL----------------EGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEVIKI 185 (192)
T ss_dssp -----SCCCT----------------TCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred -----CCCCC----------------CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence 23333 345679999999999999999999999 58899999999999999999999999
Q ss_pred Hhhc
Q 043678 269 LLEN 272 (303)
Q Consensus 269 ll~~ 272 (303)
|++.
T Consensus 186 Ll~~ 189 (192)
T 2rfm_A 186 FTEV 189 (192)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.3e-35 Score=225.29 Aligned_cols=196 Identities=16% Similarity=0.034 Sum_probs=150.9
Q ss_pred HHHHHHHHHHhh---hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHH
Q 043678 17 FKDMARDVIESL---LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLI 93 (303)
Q Consensus 17 v~~ll~~~~~~~---~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 93 (303)
++.|++++.++. ..+.++.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+..|+.+++++|+
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll 74 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDA--ALTGELEVVQQAVK----EMNDPSQPNEEGITALHNAICGANYSIVDFLI 74 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHH--HHHTCHHHHHHHHH----HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CeehhccCCCCccccccccchhHHHHHH--HHcCCHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 467788877654 2334577889999 99999999999998 68899999999999999999999999999999
Q ss_pred HHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHh
Q 043678 94 ERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRI 173 (303)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (303)
+.|+++ +.+|..|.||||+|+..|+.+++++|++.|++++..+
T Consensus 75 ~~ga~~------------------n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~------------------- 117 (229)
T 2vge_A 75 TAGANV------------------NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT------------------- 117 (229)
T ss_dssp HTTCCT------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC-------------------
T ss_pred HCCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-------------------
Confidence 998875 4888999999999999999999999888877532221
Q ss_pred hhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHH--HhcCCHHHHHHHhhcCCcccccccCCCC
Q 043678 174 QTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLA--AGKGDARTVERIISENPKCYELVDNRGW 251 (303)
Q Consensus 174 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a--~~~~~~~~v~~Ll~~g~~~~~~~~~~g~ 251 (303)
+..| .||||+| +..|+.+++++|+++|++ ++..|..|.
T Consensus 118 -----------------------~~~g----------------~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~ 157 (229)
T 2vge_A 118 -----------------------LSDG----------------ATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAV 157 (229)
T ss_dssp -----------------------SSTT----------------CCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEE
T ss_pred -----------------------CCCC----------------CCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCch
Confidence 1234 4557887 888999999999999998 588888888
Q ss_pred hHHHHHHHhCCchhhHHHhhcccchhcc--cccCCCCCCcHHHHHHhcCCCCC
Q 043678 252 NFLHYAMVSFHVGQLRNLLENNSLARSL--IDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 252 tpl~~A~~~~~~~~~~~ll~~~~~~~~~--~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
||++.++..... +.+...|++ ++.+|..|+||||+|++.|+.++
T Consensus 158 ~~l~~~~~~~~~-------~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~ 203 (229)
T 2vge_A 158 YALWDYSAEFGD-------ELSFREGESVTVLRRDGPEETDWWWAALHGQEGY 203 (229)
T ss_dssp EESSCBCCSSTT-------BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEE
T ss_pred HHHHHHhhcccc-------ccCccccccccccccCCCcccHHHHHHHcCCcce
Confidence 998865444332 233445666 77889999999999999888764
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=195.28 Aligned_cols=158 Identities=19% Similarity=0.212 Sum_probs=139.0
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
.|.||||.| +..|+.+++++|++ .+.+++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 2 ~~~t~L~~A--~~~g~~~~v~~ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------ 63 (167)
T 3v31_A 2 ANSLSVHQL--AAQGEMLYLATRIE----QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ------------ 63 (167)
T ss_dssp TTCCCHHHH--HHTTCHHHHHHHHH----HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred CCcchHHHH--HHCCCHHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------------
Confidence 489999999 99999999999998 578899999999999999999999999999999987754
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
..+..|.||||+|+..++.+++++|++.|++
T Consensus 64 ------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------------------- 94 (167)
T 3v31_A 64 ------LLGKGRESALSLACSKGYTDIVKMLLDCGVD------------------------------------------- 94 (167)
T ss_dssp ------CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-------------------------------------------
T ss_pred ------CcCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-------------------------------------------
Confidence 7888999999999999999999987776654
Q ss_pred hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 193 ~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
++..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.
T Consensus 95 ~~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 95 VNEYDW----------------NGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIESH 157 (167)
T ss_dssp TTCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCcCCC----------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence 233333 455779999999999999999999999 588999999999999999999999999886
Q ss_pred cc
Q 043678 273 NS 274 (303)
Q Consensus 273 ~~ 274 (303)
+.
T Consensus 158 ~~ 159 (167)
T 3v31_A 158 LL 159 (167)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=200.52 Aligned_cols=157 Identities=18% Similarity=0.078 Sum_probs=138.0
Q ss_pred hhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhH
Q 043678 64 ALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLK 143 (303)
Q Consensus 64 ~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L 143 (303)
..++.+|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|
T Consensus 26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~L 87 (192)
T 2rfm_A 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL------------------EDKDIEGSTALIWAVKNNRLGIAEKL 87 (192)
T ss_dssp HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc------------------ccccccCccHHHHHHHcCCHHHHHHH
Confidence 346778999999999999999999999999998774 47889999999999999999999998
Q ss_pred hhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHH
Q 043678 144 KTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLA 223 (303)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a 223 (303)
++.|++ ++..+. .|.||||+|
T Consensus 88 l~~g~~-------------------------------------------~~~~~~----------------~g~t~L~~A 108 (192)
T 2rfm_A 88 LSKGSN-------------------------------------------VNTKDF----------------SGKTPLMWS 108 (192)
T ss_dssp HHHTCC-------------------------------------------TTCCCT----------------TSCCHHHHH
T ss_pred HHCCCC-------------------------------------------CCCCCC----------------CCCcHHHHH
Confidence 776664 223333 455779999
Q ss_pred HhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 224 AGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 224 ~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+..|+.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++ .|++++.+|..|+||||+|+..++.++
T Consensus 109 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~~~~ 182 (192)
T 2rfm_A 109 IIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLE----LGADISARDLTGLTAEASARIFGRQEV 182 (192)
T ss_dssp HHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHhCcHHH
Confidence 999999999999999999 58999999999999999999999998887 478899999999999999999998764
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=198.46 Aligned_cols=168 Identities=20% Similarity=0.106 Sum_probs=141.9
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHH-hhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIE-SLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
.+|||.|+..|+.++++.|++.+.+ ....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 76 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA--SAFGEIETVRFLLE----WGADPHILAKERESALSLA 76 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHH--HHTTCHHHHHHHHH----HTCCTTCCCTTCCCHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCchhhcccCCCHHHHH
Confidence 3799999999999999999999765 446677799999999 99999999999998 6899999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|+++|+++ +..|..|.||||+|+..++.+++++|++.|+++
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~---------- 128 (172)
T 3v30_A 77 STGGYTDIVGLLLERDVDI------------------NIYDWNGGTPLLYAVRGNHVKCVEALLARGADL---------- 128 (172)
T ss_dssp HHTTCHHHHHHHHTTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----------
T ss_pred HHCCCHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc----------
Confidence 9999999999999998874 488899999999999999999999988877652
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
+..+. .|.||||+|+..|+.+++++|+++|+
T Consensus 129 ---------------------------------~~~~~----------------~g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (172)
T 3v30_A 129 ---------------------------------TTEAD----------------SGYTPMDLAVALGYRKVQQVIENHIL 159 (172)
T ss_dssp ---------------------------------TCCCT----------------TSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ---------------------------------cccCC----------------CCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence 33333 34577999999999999999999999
Q ss_pred cccccccCCCChH
Q 043678 241 KCYELVDNRGWNF 253 (303)
Q Consensus 241 ~~~~~~~~~g~tp 253 (303)
+. ...+..|.||
T Consensus 160 ~~-~~~~~~~~~p 171 (172)
T 3v30_A 160 KL-FQSNLVPADP 171 (172)
T ss_dssp HH-SCC-------
T ss_pred HH-hcccCCCCCC
Confidence 84 6778888776
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=194.73 Aligned_cols=157 Identities=18% Similarity=0.159 Sum_probs=138.2
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
++||+.|+..|+.+++++|++++++....+..|.||||+| +. |+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A--~~-~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 78 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM--KL-GNPEIARRLLL----RGANPDLKDRTGFAVIHDAA 78 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHC--CS-SCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHH--Hc-CcHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH
Confidence 5899999999999999999999888777788899999999 88 99999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+.+
T Consensus 79 ~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------ 128 (162)
T 1ihb_A 79 RAGFLDTLQTLLEFQADV------------------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS------------ 128 (162)
T ss_dssp HHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC------------
T ss_pred HcCCHHHHHHHHHcCCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC------------
Confidence 999999999999998774 48889999999999999999999887766553
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
.++..+. .|.||||+|+..|+.+++++|+++|++
T Consensus 129 ------------------------------~~~~~~~----------------~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 129 ------------------------------NVGHRNH----------------KGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp ------------------------------CTTCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred ------------------------------CCCCcCC----------------CCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 1233333 455779999999999999999999985
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=194.18 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=139.6
Q ss_pred CCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHh
Q 043678 34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAF 113 (303)
Q Consensus 34 g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 113 (303)
..||||+| +..|+.+++++|++ .+.+++.++..|.||||+|+. |+.+++++|+++|++++
T Consensus 5 ~~~~L~~A--~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~------------- 64 (162)
T 1ihb_A 5 WGNELASA--AARGDLEQLTSLLQ----NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD------------- 64 (162)
T ss_dssp CHHHHHHH--HHHTCHHHHHHHTT----SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-------------
T ss_pred HhhHHHHH--HHcCCHHHHHHHHh----CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-------------
Confidence 67899999 99999999999998 799999999999999999999 99999999999988754
Q ss_pred hhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchh
Q 043678 114 RQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLI 193 (303)
Q Consensus 114 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 193 (303)
.++..|.||||+|+..|+.+++++|++.|++ +
T Consensus 65 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------------------------------~ 96 (162)
T 1ihb_A 65 -----LKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-------------------------------------------V 96 (162)
T ss_dssp -----CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------------------------------------------T
T ss_pred -----CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------------------------------------------C
Confidence 7889999999999999999999998877665 2
Q ss_pred chhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcc
Q 043678 194 KETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273 (303)
Q Consensus 194 ~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~ 273 (303)
+..+. .|.||||+|+..|+.+++++|+++|++.++..+..|.||||+|+..++.+++++|++.+
T Consensus 97 ~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 160 (162)
T 1ihb_A 97 NIEDN----------------EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160 (162)
T ss_dssp TCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred CCcCC----------------CCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence 33333 34577999999999999999999999866899999999999999999999999998854
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=191.40 Aligned_cols=157 Identities=23% Similarity=0.224 Sum_probs=136.9
Q ss_pred ccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHH
Q 043678 32 KAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIE 111 (303)
Q Consensus 32 ~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 111 (303)
..+.++|++| +..|+.+++++|++ .|.+++.++..|.||||+|+..|+.+++++|+++|+++
T Consensus 12 ~~~~~~l~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------ 73 (169)
T 2y1l_E 12 SDLGKKLLEA--ARAGRDDEVRILMA----NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV------------ 73 (169)
T ss_dssp -CHHHHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------
T ss_pred CcccchHHHH--HHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------
Confidence 3367899999 99999999999998 78999999999999999999999999999999998774
Q ss_pred HhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccc
Q 043678 112 AFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKN 191 (303)
Q Consensus 112 ~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 191 (303)
+..+..|.||||+|+..|+.+++++|++.|+++
T Consensus 74 ------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----------------------------------------- 106 (169)
T 2y1l_E 74 ------NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV----------------------------------------- 106 (169)
T ss_dssp ------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------------------------------
T ss_pred ------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------------------------------
Confidence 478889999999999999999999988776642
Q ss_pred hhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhh
Q 043678 192 LIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLE 271 (303)
Q Consensus 192 ~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~ 271 (303)
+..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++
T Consensus 107 --~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 167 (169)
T 2y1l_E 107 --NANDM----------------EGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 167 (169)
T ss_dssp --TCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred --CCCCC----------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 22233 355779999999999999999999999 58899999999999999999999999887
Q ss_pred c
Q 043678 272 N 272 (303)
Q Consensus 272 ~ 272 (303)
.
T Consensus 168 ~ 168 (169)
T 2y1l_E 168 L 168 (169)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=192.08 Aligned_cols=155 Identities=23% Similarity=0.284 Sum_probs=138.5
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.++|+.|+..|+.+++++|+++|++....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 15 ~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLA--AFNGHLEIVEVLLK----NGADVNAVDHAGMTPLRLAA 88 (169)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred cchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHH
Confidence 3789999999999999999999988777788899999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|+++|+++ +..|..|.||||+|+..++.+++++|++.|+++
T Consensus 89 ~~~~~~~~~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------- 139 (169)
T 2y1l_E 89 LFGHLEIVEVLLKNGADV------------------NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV----------- 139 (169)
T ss_dssp HTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------
T ss_pred HcCCHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------
Confidence 999999999999998874 478899999999999999999999988877652
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcC
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISEN 239 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g 239 (303)
+..+. .|.|||++|+..|+.+++++|++.|
T Consensus 140 --------------------------------~~~~~----------------~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 140 --------------------------------NAQDK----------------FGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp --------------------------------TCCCT----------------TSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred --------------------------------CCcCC----------------CCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 23333 4557799999999999999999876
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-33 Score=213.87 Aligned_cols=183 Identities=15% Similarity=0.068 Sum_probs=153.2
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~ 82 (303)
||||.|+..|+.+++++|++.|++....+..|.||||+| +..|+.+++++|++ .|.+++.+|..|.||||+|+.
T Consensus 23 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A--~~~g~~~~v~~Ll~----~ga~~n~~d~~g~tpLh~A~~ 96 (229)
T 2vge_A 23 VLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA--ICGANYSIVDFLIT----AGANVNSPDSHGWTPLHCAAS 96 (229)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHH
Confidence 689999999999999999999988888888899999999 99999999999999 799999999999999999999
Q ss_pred hCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhcccc-CCCccHHHHH--HhcCcHHHHHhHhhCCcceeeecccccc
Q 043678 83 FGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVN-NEKNTALHEA--VSHGNVDLFKLKKTNNLILIFRDSDEKT 159 (303)
Q Consensus 83 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~~A--~~~~~~~~v~~L~~~~~~~~~~~~~~~~ 159 (303)
.|+.+++++|++.|++++ ..+ ..|.||||+| +..|+.+++++|++.|+++
T Consensus 97 ~g~~~~v~~Ll~~ga~~~------------------~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~--------- 149 (229)
T 2vge_A 97 CNDTVICMALVQHGAAIF------------------ATTLSDGATAFEKCDPYREGYADCATYLADVEQSM--------- 149 (229)
T ss_dssp TTCHHHHHHHHTTTCCTT------------------CCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT---------
T ss_pred cCCHHHHHHHHHcCCCcc------------------cccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc---------
Confidence 999999999999998854 554 6999999999 9999999999987777653
Q ss_pred hhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcC
Q 043678 160 NILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISEN 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g 239 (303)
+..+..|.||++.+ +... ..++|++.|
T Consensus 150 ----------------------------------~~~~~~~~~~l~~~----------------~~~~---~~~~ll~~g 176 (229)
T 2vge_A 150 ----------------------------------GLMNSGAVYALWDY----------------SAEF---GDELSFREG 176 (229)
T ss_dssp ----------------------------------TTSGGGEEEESSCB----------------CCSS---TTBCCBCTT
T ss_pred ----------------------------------ccccCCchHHHHHH----------------hhcc---ccccCcccc
Confidence 33344444443321 1111 225788889
Q ss_pred Ccc-cccccCCCChHHHHHHHhCCchhhHHHhh
Q 043678 240 PKC-YELVDNRGWNFLHYAMVSFHVGQLRNLLE 271 (303)
Q Consensus 240 ~~~-~~~~~~~g~tpl~~A~~~~~~~~~~~ll~ 271 (303)
+++ ++.+|..|+||||+|++.|+.++++..+-
T Consensus 177 a~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l 209 (229)
T 2vge_A 177 ESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF 209 (229)
T ss_dssp CEEEEEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred ccccccccCCCcccHHHHHHHcCCcceeehhhh
Confidence 874 46788999999999999999988876443
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=191.11 Aligned_cols=158 Identities=18% Similarity=0.080 Sum_probs=141.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|++.+.+....+..|.||||+| +..|+.+++++|++ .|.+++..+..|.||||+|+
T Consensus 4 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWA--AAHGQIAVVEFLLQ----NGADPQLLGKGRESALSLAC 77 (167)
T ss_dssp CCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHH
T ss_pred cchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHH--HHCCCHHHHHHHHH----cCCCCCCcCCCCCcHHHHHH
Confidence 4899999999999999999999887777777899999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.|+++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------- 128 (167)
T 3v31_A 78 SKGYTDIVKMLLDCGVDV------------------NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP----------- 128 (167)
T ss_dssp HHTCHHHHHHHHHHTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------
T ss_pred HcCCHHHHHHHHHCCCCC------------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------
Confidence 999999999999998875 488899999999999999999999988777652
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
+..+. .|.|||++|+..|+.+++++|++++.+
T Consensus 129 --------------------------------~~~~~----------------~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 129 --------------------------------TIETD----------------SGYNSMDLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp --------------------------------TCCCT----------------TSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --------------------------------CCcCC----------------CCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence 23333 455779999999999999999999876
Q ss_pred c
Q 043678 242 C 242 (303)
Q Consensus 242 ~ 242 (303)
.
T Consensus 161 ~ 161 (167)
T 3v31_A 161 L 161 (167)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-30 Score=186.01 Aligned_cols=150 Identities=21% Similarity=0.245 Sum_probs=92.1
Q ss_pred CchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhh
Q 043678 35 NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFR 114 (303)
Q Consensus 35 ~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 114 (303)
.|+||.| +..|+.+++++|++ .|.+++ .+..|.||||+|+..|+.+++++|++.|+++
T Consensus 3 ~~~L~~A--~~~g~~~~v~~Ll~----~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------------- 60 (153)
T 1awc_B 3 GKKLLEA--ARAGQDDEVRILMA----NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR--------------- 60 (153)
T ss_dssp HHHHHHH--HHHTCHHHHHHHHH----HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---------------
T ss_pred cHHHHHH--HHcCCHHHHHHHHH----cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---------------
Confidence 3566666 66666666666666 344333 3556666666666666666666666665543
Q ss_pred hhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhc
Q 043678 115 QMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIK 194 (303)
Q Consensus 115 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 194 (303)
+..+..|.||||+|+..|+.+++++|++.|++ ++
T Consensus 61 ---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------------------------------~~ 94 (153)
T 1awc_B 61 ---DARTKVDRTPLHMAASEGHANIVEVLLKHGAD-------------------------------------------VN 94 (153)
T ss_dssp ---TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-------------------------------------------TT
T ss_pred ---CCCCCCCCCHHHHHHHcChHHHHHHHHHcCCC-------------------------------------------CC
Confidence 25556666666666666666666665555543 12
Q ss_pred hhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHH
Q 043678 195 ETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNL 269 (303)
Q Consensus 195 ~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~l 269 (303)
..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|
T Consensus 95 ~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 95 AKDM----------------LKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCC----------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 2222 234556777777777777777777776 366677777777777777776666554
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-32 Score=211.81 Aligned_cols=206 Identities=17% Similarity=0.075 Sum_probs=140.5
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.|||+.|+..|+.+.++.|+++|.+...+.. |.||||+| +..|+.+++++|++ .|.+++.+|..|.||||+|+
T Consensus 6 ~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~~-~~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 6 QVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDS--SLEGEFDLVQRIIY----EVDDPSLPNDEGITALHNAV 78 (239)
T ss_dssp --------------------------------CHHHHHHH--HHHTCHHHHHHHTS----TTSSCCCCCTTSCCHHHHHH
T ss_pred cccCchhhhhhhHHHHHHHhccCCCcccCch-hhHHHHHH--HHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHH
Confidence 5899999999999999999999998776644 89999999 99999999999998 78899999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|++.|++++..
T Consensus 79 ~~g~~~~v~~Ll~~ga~~------------------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-------- 132 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGVNV------------------NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM-------- 132 (239)
T ss_dssp HHTCHHHHHHHHHHTCCT------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--------
T ss_pred HcCCHHHHHHHHHcCCCC------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccee--------
Confidence 999999999999999875 488999999999999999999999988887763322
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHH--HhcCCHHHHHHHhhcC
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLA--AGKGDARTVERIISEN 239 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a--~~~~~~~~v~~Ll~~g 239 (303)
+.. .+.||||+| +..|+.+++++|+++|
T Consensus 133 -----------------------------------~~~---------------~~~t~l~~a~~~~~g~~~~~~~Ll~~~ 162 (239)
T 1ycs_B 133 -----------------------------------TYS---------------DMQTAADKCEEMEEGYTQCSQFLYGVQ 162 (239)
T ss_dssp -----------------------------------CSS---------------SCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred -----------------------------------cCC---------------CCcchHHHHHHhhhccHHHHHHHHHhh
Confidence 222 223778888 7789999999999999
Q ss_pred Ccccccc---------cCCCChHHHHHHHhCCchhhHHHhhcccchhcc------cccCCCCCCcHHHHHHhc
Q 043678 240 PKCYELV---------DNRGWNFLHYAMVSFHVGQLRNLLENNSLARSL------IDEGDAKGNTPLHVLAAV 297 (303)
Q Consensus 240 ~~~~~~~---------~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~------~~~~d~~g~tpL~~A~~~ 297 (303)
+++ +.. +..+.+|++++++.|.. +..+.+ .+.+ ....+..|++|..|....
T Consensus 163 a~~-~~~~~~~~~al~d~~~~~~~eLa~~~G~~--i~vl~~----~~~~~~~Ww~~~~~~~~G~~P~~yv~~~ 228 (239)
T 1ycs_B 163 EKM-GIMNKGVIYALWDYEPQNDDELPMKEGDC--MTIIHR----EDEDEIEWWWARLNDKEGYVPRNLLGLY 228 (239)
T ss_dssp HHT-TTTGGGEEEESSCBCCSSTTBCCBCSSCE--EEECCC----CTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred hcc-cccccceEEEEeccCCCCCCcccccCCCE--EEEEEe----cCCCCCCEEEEEECCcEEEeehHHeeEC
Confidence 874 443 66789999998888862 222222 2221 234577888998876443
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-30 Score=190.75 Aligned_cols=168 Identities=19% Similarity=0.190 Sum_probs=139.3
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
.+.++||.| +..|+.+++++|++ ..+.+++..+..|.||||+|+..|+.+++++|++.|++++
T Consensus 4 ~~~~~l~~A--~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------ 66 (179)
T 3f6q_A 4 EFMDDIFTQ--CREGNAVAVRLWLD---NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN------------ 66 (179)
T ss_dssp ---CCHHHH--HHHTCHHHHHHHHH---CTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred HHHHHHHHH--HHcCCHHHHHHHHh---cCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC------------
Confidence 378899999 99999999999988 2477889999999999999999999999999999987744
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
..+..|.||||+|+..|+.+++++|++.|++
T Consensus 67 ------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------------------- 97 (179)
T 3f6q_A 67 ------VMNRGDDTPLHLAASHGHRDIVQKLLQYKAD------------------------------------------- 97 (179)
T ss_dssp ------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------------------------------------------
T ss_pred ------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------------------------------------------
Confidence 7888999999999999999999998877765
Q ss_pred hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 193 ~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
++..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|.|||++|+..++.++++.|++
T Consensus 98 ~~~~d~----------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~~- 159 (179)
T 3f6q_A 98 INAVNE----------------HGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAEK- 159 (179)
T ss_dssp TTCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHHHHHHH-
T ss_pred CCccCC----------------CCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHHHHHHH-
Confidence 233333 345679999999999999999999999 58899999999999999999777777776
Q ss_pred ccchhcccccCCCCC
Q 043678 273 NSLARSLIDEGDAKG 287 (303)
Q Consensus 273 ~~~~~~~~~~~d~~g 287 (303)
.|++++..+..+
T Consensus 160 ---~g~~~~~~~~~~ 171 (179)
T 3f6q_A 160 ---MGQNLNRIPYKD 171 (179)
T ss_dssp ---TTCCCSCBCCCC
T ss_pred ---hhcCcccCCccc
Confidence 566677665544
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-31 Score=218.19 Aligned_cols=249 Identities=12% Similarity=0.063 Sum_probs=161.8
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhh---hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchh---hhccccCCCcH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESL---LTAKAKNTILHINIISSERENVSTKFVEEILEKCPAL---LLQVNAKGDTP 76 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~---~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~---~~~~~~~g~tp 76 (303)
||||.|+..|+.++|++|+++|.... ..+..|.||||+| +..|+.+++++|++ .|++ .+..+.+ .||
T Consensus 94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A--a~~G~~eiv~~Ll~----~gad~~~~~i~~~~-~Tp 166 (376)
T 2aja_A 94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA--AENGHLHVLNRLCE----LAPTEIMAMIQAEN-YHA 166 (376)
T ss_dssp HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH--HHTTCHHHHHHHHH----SCTTTHHHHHSHHH-HHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH--HHcCCHHHHHHHHh----CCCCccccccCCCC-CCH
Confidence 89999999999999999999987221 1223477899999 99999999999998 6743 2222333 899
Q ss_pred HHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHH-hcCcHHHHHhHhhCCcceeeecc
Q 043678 77 LHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAV-SHGNVDLFKLKKTNNLILIFRDS 155 (303)
Q Consensus 77 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~-~~~~~~~v~~L~~~~~~~~~~~~ 155 (303)
||+|+..|+.++|++|+++|+++. .+..|..|.||||+|+ ..|+.++|++|++.|..
T Consensus 167 Lh~Aa~~G~~eiv~~Ll~~ga~~~----------------~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~------ 224 (376)
T 2aja_A 167 FRLAAENGHLHVLNRLCELAPTEA----------------TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM------ 224 (376)
T ss_dssp HHHHHHTTCHHHHHHHHHSCGGGH----------------HHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH------
T ss_pred HHHHHHCCCHHHHHHHHHcCCccc----------------hhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc------
Confidence 999999999999999999998854 1125677999999999 99999999999987643
Q ss_pred cccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccC--------CcccHHhHHHh--
Q 043678 156 DEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKD--------RKMTALHLAAG-- 225 (303)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~--------~~~t~L~~a~~-- 225 (303)
+.++++.+..... .+++++|++.+.. ++..+. +++.++.....+ .+...+...+.
T Consensus 225 -~~taL~~Aa~~g~---------~evv~lL~~~ga~-~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~ 289 (376)
T 2aja_A 225 -LAYAEIHEFEYGE---------KYVNPFIARHVNR-LKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN 289 (376)
T ss_dssp -HHHHHHCTTTTTT---------TTHHHHHHHHHHH-HHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC
T ss_pred -cchHHHHHHHCCC---------HHHHHHHHhcCcc-cccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcc
Confidence 5566665543332 5788888888776 443332 333333211110 00011111122
Q ss_pred -cCCHHHHHHHhhcCCcc----cccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCC
Q 043678 226 -KGDARTVERIISENPKC----YELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPK 300 (303)
Q Consensus 226 -~~~~~~v~~Ll~~g~~~----~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~ 300 (303)
.+..+.+++|++.+... .......+.||||+|++.|+.++++.|++. ...++..|.||+.+|...|..
T Consensus 290 ~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~-------~~v~~~~~~~~~~~~~~~~~~ 362 (376)
T 2aja_A 290 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI-------PSVLALTKANNYYINETGGRL 362 (376)
T ss_dssp CGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS-------HHHHHSCC-------------
T ss_pred hhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC-------hHHHHHHHHhccccccccccc
Confidence 23466788888744210 011224567999999999999999999985 355688899999999999988
Q ss_pred CC
Q 043678 301 EF 302 (303)
Q Consensus 301 ~i 302 (303)
|+
T Consensus 363 ~~ 364 (376)
T 2aja_A 363 DL 364 (376)
T ss_dssp --
T ss_pred cH
Confidence 75
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-30 Score=185.02 Aligned_cols=150 Identities=21% Similarity=0.214 Sum_probs=133.1
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.++|+.|+..|+.+++++|+++|.+.. .+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 75 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLA--AQYGHFSTTEVLLR----AGVSRDARTKVDRTPLHMAA 75 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHH--HHHTCHHHHHHHHT----TTCCTTCCCTTCCCHHHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH
Confidence 589999999999999999999988654 466699999999 99999999999998 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.|+++
T Consensus 76 ~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~----------- 126 (153)
T 1awc_B 76 SEGHANIVEVLLKHGADV------------------NAKDMLKMTALHWATEHNHQEVVELLIKYGADV----------- 126 (153)
T ss_dssp HHTCHHHHHHHHTTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------
T ss_pred HcChHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-----------
Confidence 999999999999998875 488899999999999999999999988877752
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHH
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERI 235 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~L 235 (303)
+..+. .|.|||++|+..|+.+++++|
T Consensus 127 --------------------------------~~~~~----------------~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 127 --------------------------------HTQSK----------------FCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp --------------------------------TCCCT----------------TSCCHHHHHHHTTCHHHHHHH
T ss_pred --------------------------------cccCC----------------CCCCHHHHHHHcCCHHHHHHh
Confidence 33333 345779999999999999987
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=183.30 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=130.7
Q ss_pred CCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHh
Q 043678 34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAF 113 (303)
Q Consensus 34 g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 113 (303)
+.||||+| +..|+.+++++|++. .+.+++..+..|.||||+ +..|+.+++++|++.|++++
T Consensus 2 ~~~~L~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~------------- 62 (156)
T 1bd8_A 2 AGDRLSGA--AARGDVQEVRRLLHR---ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN------------- 62 (156)
T ss_dssp HHHHHHHH--HHHTCHHHHHHHHHT---TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-------------
T ss_pred cchHHHHH--HHhCCHHHHHHHHHh---hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-------------
Confidence 45899999 999999999999882 355888899999999999 89999999999999987744
Q ss_pred hhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchh
Q 043678 114 RQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLI 193 (303)
Q Consensus 114 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 193 (303)
.+|..|.||||+|+..|+.+++++|++.|+++
T Consensus 63 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------------------------------- 94 (156)
T 1bd8_A 63 -----VQDTSGTSPVHDAARTGFLDTLKVLVEHGADV------------------------------------------- 94 (156)
T ss_dssp -----CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------------------------------------------
T ss_pred -----CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-------------------------------------------
Confidence 78889999999999999999999887777652
Q ss_pred chhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 194 KETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 194 ~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
+..+. .|.||||+|+..|+.+++++|+++ ++ ++.+|..|.||||+|+..|+.+++++|++.
T Consensus 95 ~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 95 NVPDG----------------TGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CCCCT----------------TSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CCcCC----------------CCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 22333 345669999999999999999998 77 588999999999999999999999998875
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=188.83 Aligned_cols=164 Identities=21% Similarity=0.189 Sum_probs=141.1
Q ss_pred ChhHHHHHhcCCChhHHHHHHH-HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARD-VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
.++|+.|+..|+.+++++|++. +.+....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|
T Consensus 6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 79 (179)
T 3f6q_A 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA--CREGRSAVVEMLIM----RGARINVMNRGDDTPLHLA 79 (179)
T ss_dssp -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHH--HHcCcHHHHHHHHH----cCCCCCCcCCCCCCHHHHH
Confidence 4789999999999999999998 444556777799999999 99999999999999 7999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|+++|+++ +..|..|.||||+|+..++.+++++|++.|+++
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~---------- 131 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADI------------------NAVNEHGNVPLHYACFWGQDQVAEDLVANGALV---------- 131 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS----------
T ss_pred HHcCCHHHHHHHHHcCCCC------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc----------
Confidence 9999999999999999874 488999999999999999999999988887763
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
+..+..|. |||++|+..++.+++++|++.|+
T Consensus 132 ---------------------------------~~~~~~g~----------------tpl~~A~~~~~~~~~~~L~~~g~ 162 (179)
T 3f6q_A 132 ---------------------------------SICNKYGE----------------MPVDKAKAPLRELLRERAEKMGQ 162 (179)
T ss_dssp ---------------------------------SBCCTTSC----------------CGGGGSCHHHHHHHHHHHHHTTC
T ss_pred ---------------------------------chhccCCC----------------CcHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444 55888888888999999999999
Q ss_pred cccccccCC
Q 043678 241 KCYELVDNR 249 (303)
Q Consensus 241 ~~~~~~~~~ 249 (303)
++ +..+..
T Consensus 163 ~~-~~~~~~ 170 (179)
T 3f6q_A 163 NL-NRIPYK 170 (179)
T ss_dssp CC-SCBCCC
T ss_pred Cc-ccCCcc
Confidence 85 544443
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-30 Score=200.34 Aligned_cols=178 Identities=15% Similarity=0.037 Sum_probs=122.6
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
.|.||||.| +..++.+.++.|++ .|.+++.. ..|.||||+|+..|+.+++++|++.|++
T Consensus 4 ~g~t~L~~a--~~~~~~~~~~~ll~----~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-------------- 62 (239)
T 1ycs_B 4 TGQVSLPPG--KRTNLRKTGSERIA----HGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDD-------------- 62 (239)
T ss_dssp ----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS--------------
T ss_pred cccccCchh--hhhhhHHHHHHHhc----cCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCC--------------
Confidence 499999999 99999999999999 78888754 6789999999999999999999999886
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
++..|..|.||||+|+..|+.+++++|++.|++
T Consensus 63 ----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------------------------------------------- 95 (239)
T 1ycs_B 63 ----PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN------------------------------------------- 95 (239)
T ss_dssp ----CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-------------------------------------------
T ss_pred ----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------------------------------------------
Confidence 458899999999999999999999998777665
Q ss_pred hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCC-hHHHHH--HHhCCchhhHHH
Q 043678 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGW-NFLHYA--MVSFHVGQLRNL 269 (303)
Q Consensus 193 ~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~-tpl~~A--~~~~~~~~~~~l 269 (303)
++..|.. |.||||+|+..|+.+++++|+++|+++ +..+..|. ||||+| +..|+.+++++|
T Consensus 96 ~~~~d~~----------------g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~L 158 (239)
T 1ycs_B 96 VNAADSD----------------GWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFL 158 (239)
T ss_dssp TTCCCTT----------------CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred CCccCCC----------------CCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence 3334443 456699999999999999999999995 77887776 999999 888999999999
Q ss_pred hhcccchhcccccC---------CCCCCcHHHHHHhcCC
Q 043678 270 LENNSLARSLIDEG---------DAKGNTPLHVLAAVRP 299 (303)
Q Consensus 270 l~~~~~~~~~~~~~---------d~~g~tpL~~A~~~~~ 299 (303)
++. |++++.. +..|.+|++++.+.|.
T Consensus 159 l~~----~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 159 YGV----QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHH----HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHh----hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 985 4444443 7778999988877664
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-30 Score=188.05 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=123.7
Q ss_pred cccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHH
Q 043678 31 AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRI 110 (303)
Q Consensus 31 ~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~ 110 (303)
+..|.|+||.| +..|+.+++++|++. .+.+.+..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 5 ~~~~~~~l~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------- 68 (165)
T 3twr_A 5 NSEADRQLLEA--AKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV----------- 68 (165)
T ss_dssp -CHHHHHHHHH--HHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-----------
T ss_pred cchhhHHHHHH--HHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-----------
Confidence 44477888888 888888888888762 55667777778888888888888888888888888764
Q ss_pred HHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhcc
Q 043678 111 EAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKK 190 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 190 (303)
+.+|..|.||||+|+..++.+++++|++.|++
T Consensus 69 -------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------------------------------- 100 (165)
T 3twr_A 69 -------HAKDKGGLVPLHNACSYGHYEVAELLVKHGAV----------------------------------------- 100 (165)
T ss_dssp -------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------------------------------------
T ss_pred -------CccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC-----------------------------------------
Confidence 37778888888888888888888887776664
Q ss_pred chhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHh
Q 043678 191 NLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLL 270 (303)
Q Consensus 191 ~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll 270 (303)
++..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+. ++.+++++|+
T Consensus 101 --~~~~~~----------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 101 --VNVADL----------------WKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp --TTCCCT----------------TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred --CCCcCC----------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhHhc-CChHHHHHHh
Confidence 222333 344668888888888999999988888 47888889999988766 7778877777
Q ss_pred hc
Q 043678 271 EN 272 (303)
Q Consensus 271 ~~ 272 (303)
+.
T Consensus 161 ~~ 162 (165)
T 3twr_A 161 GD 162 (165)
T ss_dssp TC
T ss_pred hc
Confidence 64
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=185.94 Aligned_cols=155 Identities=22% Similarity=0.331 Sum_probs=132.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHH-HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARD-VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
++||+.|+..|+.++++.|++. +.+....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|
T Consensus 9 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA--AGYNRVSVVEYLLQ----HGADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred hHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHH--HHcChHHHHHHHHh----cCCCCCccCCCCCCHHHHH
Confidence 4799999999999999999986 444445566689999999 99999999999999 7999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++.|++
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----------- 133 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVN------------------VADLWKFTPLHEAAAKGKYEICKLLLQHGAD----------- 133 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTT------------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred HHcCcHHHHHHHHhCCCCCC------------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------
Confidence 99999999999999988754 8889999999999999999999998887775
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
++..+..|. |||++|+. ++.+++++|+++|+
T Consensus 134 --------------------------------~~~~~~~g~----------------t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 134 --------------------------------PTKKNRDGN----------------TPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp --------------------------------TTCCCTTSC----------------CTGGGSCT-TCHHHHHHHHTC--
T ss_pred --------------------------------CcccCCCCC----------------ChhHhHhc-CChHHHHHHhhccc
Confidence 334444444 44777655 88899999999875
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-29 Score=186.43 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=103.0
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccch----hhHHHHHHHHHhCchhhhccccCCCcHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSEREN----VSTKFVEEILEKCPALLLQVNAKGDTPLH 78 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~----~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~ 78 (303)
++|+.|++.|+.+.++.+++.+++. ..+..|.||||+| +..|+. +++++|++ .|++++.++..|+||||
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~~~-~~~~~g~T~Lh~A--~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~TpLh 80 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGYED-KESVLKSNILYDV--LRNNNDEARYKISMFLIN----KGADIKSRTKEGTTLFF 80 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSSSC-HHHHHTTTHHHHH--TTCSCHHHHHHHHHHHHH----TTCCSSCCCTTCCCTHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCccc-ccccCCCCHHHHH--HHcCCcchHHHHHHHHHH----CCCCCCCCCCCCCcHHH
Confidence 4566666666666666666655432 2223466666666 665543 35666665 56666666666666666
Q ss_pred HHHHhCC------HHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCc-cHHHHHHhcCcHHHHHhHhhCCccee
Q 043678 79 LAAKFGH------FDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKN-TALHEAVSHGNVDLFKLKKTNNLILI 151 (303)
Q Consensus 79 ~A~~~~~------~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~l~~A~~~~~~~~v~~L~~~~~~~~ 151 (303)
+|+..++ .+++++|+++|+++ +.+|..|. ||||+|+..+..+
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadi------------------n~~d~~g~ttpLh~A~~~~~~~------------- 129 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGADI------------------TALYKPYKIVVFKNIFNYFVDE------------- 129 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCS------------------SSCBGGGTBCTTGGGGGCCSCH-------------
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCCCC------------------CccCCCcCchHHHHHHHcCCCh-------------
Confidence 6666654 35566666666553 35555565 6666655432210
Q ss_pred eecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHH
Q 043678 152 FRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDART 231 (303)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~ 231 (303)
.+..++
T Consensus 130 --------------------------------------------------------------------------~~~~~i 135 (186)
T 3t8k_A 130 --------------------------------------------------------------------------NEMIPL 135 (186)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------hhHHHH
Confidence 123567
Q ss_pred HHHHhh-cCCcccccccCCCChHHHHHHHhCCchhhHHHhhccc
Q 043678 232 VERIIS-ENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNS 274 (303)
Q Consensus 232 v~~Ll~-~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~ 274 (303)
+++|++ +|++ ++.+|..|+||||+|++.++.++++.|.+...
T Consensus 136 v~~Ll~~~gad-~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~ 178 (186)
T 3t8k_A 136 YKLIFSQSGLQ-LLIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178 (186)
T ss_dssp HHHHHTSTTCC-TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 899999 8999 58999999999999999999998888888643
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-28 Score=177.80 Aligned_cols=147 Identities=22% Similarity=0.228 Sum_probs=127.0
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceee
Q 043678 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIF 152 (303)
Q Consensus 73 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~ 152 (303)
|.||||+|+..|+.+++++|++. ...+ ++..+..|.||||+ +..|+.+++++|++.|+++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~----------------~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-- 61 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVH----------------PDALNRFGKTALQV-MMFGSTAIALELLKQGASP-- 61 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCC----------------TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT--
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcC----------------ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC--
Confidence 56999999999999999999998 3111 55788999999999 9999999999988777652
Q ss_pred ecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHH
Q 043678 153 RDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTV 232 (303)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v 232 (303)
+..+. .|.||||+|+..|+.+++
T Consensus 62 -----------------------------------------~~~~~----------------~g~t~L~~A~~~~~~~~v 84 (156)
T 1bd8_A 62 -----------------------------------------NVQDT----------------SGTSPVHDAARTGFLDTL 84 (156)
T ss_dssp -----------------------------------------TCCCT----------------TSCCHHHHHHHTTCHHHH
T ss_pred -----------------------------------------CCcCC----------------CCCCHHHHHHHcCcHHHH
Confidence 33333 345779999999999999
Q ss_pred HHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 233 ERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 233 ~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
++|+++|++ ++.+|..|+||||+|+..|+.+++++|++. ++++.+|..|.||||+|++.|+.++
T Consensus 85 ~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----~~~~~~~~~g~t~l~~A~~~~~~~~ 148 (156)
T 1bd8_A 85 KVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-----SDLHRRDARGLTPLELALQRGAQDL 148 (156)
T ss_dssp HHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-----SCTTCCCTTSCCHHHHHHHSCCHHH
T ss_pred HHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-----cCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 999999999 588999999999999999999999998885 6789999999999999999998764
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-29 Score=207.87 Aligned_cols=197 Identities=13% Similarity=0.054 Sum_probs=147.5
Q ss_pred hHHHHHh-cCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchh---hhccccCCCcHHHH
Q 043678 4 NFFKAAS-AGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPAL---LLQVNAKGDTPLHL 79 (303)
Q Consensus 4 ~L~~A~~-~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~---~~~~~~~g~tpL~~ 79 (303)
.++.|.. .++.+.+++++++|.+ +.||||+| +..|+.+++++|++ .|.. .+..+..|.||||+
T Consensus 68 ~~~~a~~~~~~~~~~~~l~~~g~~-------~~T~Lh~A--a~~G~~e~v~~Ll~----~ga~~~~~~~~~~~~~tpL~~ 134 (376)
T 2aja_A 68 CLYYAHYNRNAKQLWSDAHKKGIK-------SEVICFVA--AITGCSSALDTLCL----LLTSDEIVKVIQAENYQAFRL 134 (376)
T ss_dssp HHHHHHTTTTCTTHHHHHHHHTCC-------HHHHHHHH--HHHCCHHHHHHHTT----C--CCSSCC--CHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHcCCC-------cCCHHHHH--HHcCCHHHHHHHHH----cCCcHHHHHHhccCCCCHHHH
Confidence 4555555 5788888888887654 45999999 99999999999998 5552 22345567899999
Q ss_pred HHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccc
Q 043678 80 AAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKT 159 (303)
Q Consensus 80 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~ 159 (303)
|+..|+.++|++|+++|++... ..++..+ .||||+|+..|+.++|++|++.|+++..
T Consensus 135 Aa~~G~~eiv~~Ll~~gad~~~-------------~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~------- 191 (376)
T 2aja_A 135 AAENGHLHVLNRLCELAPTEIM-------------AMIQAEN---YHAFRLAAENGHLHVLNRLCELAPTEAT------- 191 (376)
T ss_dssp HHHTTCHHHHHHHHHSCTTTHH-------------HHHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGGHH-------
T ss_pred HHHcCCHHHHHHHHhCCCCccc-------------cccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCccch-------
Confidence 9999999999999999964210 0012222 8999999999999999998888775211
Q ss_pred hhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHH-hcCCHHHHHHHhhc
Q 043678 160 NILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAA-GKGDARTVERIISE 238 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~-~~~~~~~v~~Ll~~ 238 (303)
+..+. .|.||||+|+ ..|+.+++++|++.
T Consensus 192 ----------------------------------~~~d~----------------~g~TpL~~Aa~~~G~~eiv~~Ll~~ 221 (376)
T 2aja_A 192 ----------------------------------AMIQA----------------ENYYAFRWAAVGRGHHNVINFLLDC 221 (376)
T ss_dssp ----------------------------------HHHHH----------------HHHHHHHHHHSTTCCHHHHHHHTTS
T ss_pred ----------------------------------hccCC----------------CCCCHHHHHHHHCCCHHHHHHHHhC
Confidence 00222 3457799999 99999999999997
Q ss_pred CCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 239 NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 239 g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
|++ |.||||+|+..|+.+++++|++. |++++.+| ++++.|+..|+.++
T Consensus 222 ga~--------~~taL~~Aa~~g~~evv~lL~~~----ga~~~~~~----~~l~~A~~~g~~~v 269 (376)
T 2aja_A 222 PVM--------LAYAEIHEFEYGEKYVNPFIARH----VNRLKEMH----DAFKLSNPDGVFDL 269 (376)
T ss_dssp HHH--------HHHHHHCTTTTTTTTHHHHHHHH----HHHHHHHH----TTTTTTSSSSCCCC
T ss_pred CCc--------cchHHHHHHHCCCHHHHHHHHhc----Cccccccc----HHHHHHHHCCChhh
Confidence 632 78999999999999999998885 55565544 47888888888774
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-28 Score=174.35 Aligned_cols=145 Identities=17% Similarity=0.059 Sum_probs=104.9
Q ss_pred hccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhC
Q 043678 67 LQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTN 146 (303)
Q Consensus 67 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~ 146 (303)
+..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+ .|+.+++++|++.
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~ 66 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANP------------------NAPNSYGRRPIQVMM-MGSARVAELLLLH 66 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT------------------TCCCSSSCCTTTSSC-TTCHHHHHHHHTT
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHH-cCCHHHHHHHHHc
Confidence 446778899999999999999999999988774 478889999999985 8899999988877
Q ss_pred CcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCccc-HHhHHHh
Q 043678 147 NLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMT-ALHLAAG 225 (303)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t-~L~~a~~ 225 (303)
|++++ ..+. .|.| |||+|+.
T Consensus 67 g~~~~-------------------------------------------~~d~----------------~g~ttpL~~A~~ 87 (156)
T 1bi7_B 67 GAEPN-------------------------------------------CADP----------------ATLTRPVHDAAR 87 (156)
T ss_dssp TCCCC-------------------------------------------CCCT----------------TTCCCHHHHHHH
T ss_pred CCCCC-------------------------------------------CcCC----------------CCCcHHHHHHHH
Confidence 76533 2333 3345 7999999
Q ss_pred cCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHH
Q 043678 226 KGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVL 294 (303)
Q Consensus 226 ~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A 294 (303)
.|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++ .|++++.+|..|.||.+-+
T Consensus 88 ~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 88 EGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA----AAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS----CC-----------------
T ss_pred CCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHH----cCCCCCccCcCcCcccccC
Confidence 9999999999999999 58899999999999999999888888777 5888999999999998744
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-27 Score=172.62 Aligned_cols=136 Identities=13% Similarity=-0.004 Sum_probs=114.5
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCc-HHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDT-PLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t-pL~~A 80 (303)
.||||.|+..|+.+++++|+++|++....+..|.||||+| + .|+.+++++|++ .|.+++.++..|.| |||+|
T Consensus 13 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~-~~~~~~v~~Ll~----~g~~~~~~d~~g~ttpL~~A 85 (156)
T 1bi7_B 13 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM--M-MGSARVAELLLL----HGAEPNCADPATLTRPVHDA 85 (156)
T ss_dssp TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSS--C-TTCHHHHHHHHT----TTCCCCCCCTTTCCCHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--H-cCCHHHHHHHHH----cCCCCCCcCCCCCcHHHHHH
Confidence 5899999999999999999999988877888899999999 7 899999999998 79999999999999 99999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.|+++...+..|.++
T Consensus 86 ~~~~~~~~v~~Ll~~ga~~------------------~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 147 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAGARL------------------DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA 147 (156)
T ss_dssp HHHTCHHHHHHHHHHTCCS------------------SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------
T ss_pred HHCCCHHHHHHHHHcCCCC------------------cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcc
Confidence 9999999999999999874 4889999999999999999999999999999999999888875
Q ss_pred hh
Q 043678 161 IL 162 (303)
Q Consensus 161 ~~ 162 (303)
..
T Consensus 148 ~~ 149 (156)
T 1bi7_B 148 AE 149 (156)
T ss_dssp --
T ss_pred cc
Confidence 54
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-27 Score=168.28 Aligned_cols=123 Identities=14% Similarity=0.088 Sum_probs=115.0
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccC-CCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAK-GDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-g~tpL~~A 80 (303)
.||||.|+..|+.+++++|+++|++....+..|.||||+| +. |+.+++++|++ .|.+++.++.. |.||||+|
T Consensus 13 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~-~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A 85 (136)
T 1d9s_A 13 DAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM--MM-GSAQVAELLLL----HGAEPNCADPATLTRPVHDA 85 (136)
T ss_dssp SCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTS--TT-SCHHHHHHHHH----HTCCSSCCBTTTTBCHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHH--Hc-CCHHHHHHHHH----CCCCCCCcCCCCCCCHHHHH
Confidence 5899999999999999999999988877888899999999 88 99999999999 68999999999 99999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcc
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLI 149 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~ 149 (303)
+..|+.+++++|+++|+++ +.+|..|.||||+|+..++.+++++|++.|++
T Consensus 86 ~~~~~~~~v~~Ll~~ga~~------------------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 86 AREGFLDTLVVLHRAGARL------------------DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHTCHHHHHHHHHTCCCC------------------CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHcCCHHHHHHHHHcCCCC------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999874 48899999999999999999999999988764
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-27 Score=166.29 Aligned_cols=132 Identities=18% Similarity=0.137 Sum_probs=111.7
Q ss_pred chhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHh
Q 043678 63 PALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKL 142 (303)
Q Consensus 63 ~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~ 142 (303)
+.+++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+. ++.+++++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~-~~~~~v~~ 62 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP------------------NALNRFGRRPIQVMMM-GSAQVAEL 62 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTCCTTTTTSTT-SCHHHHHH
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc------------------CCcCCCCCCHHHHHHc-CCHHHHHH
Confidence 4567888899999999999999999999999998774 4788899999999999 99999888
Q ss_pred HhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhH
Q 043678 143 KKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHL 222 (303)
Q Consensus 143 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~ 222 (303)
|++.|+++ +..+.. .|.||||+
T Consensus 63 Ll~~g~~~-------------------------------------------~~~~~~---------------~g~t~L~~ 84 (136)
T 1d9s_A 63 LLLHGAEP-------------------------------------------NCADPA---------------TLTRPVHD 84 (136)
T ss_dssp HHHHTCCS-------------------------------------------SCCBTT---------------TTBCHHHH
T ss_pred HHHCCCCC-------------------------------------------CCcCCC---------------CCCCHHHH
Confidence 77776653 222222 15577999
Q ss_pred HHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 223 AAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 223 a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++.
T Consensus 85 A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 133 (136)
T 1d9s_A 85 AAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133 (136)
T ss_dssp HHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999999999 588999999999999999999999888885
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-27 Score=165.14 Aligned_cols=122 Identities=24% Similarity=0.270 Sum_probs=113.8
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|+++|++....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 15 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA--TAHGHLEIVEVLLK----NGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHH
T ss_pred cHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHHH
Confidence 4799999999999999999999988777788899999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCC
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN 147 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~ 147 (303)
..|+.+++++|+++|++++ ..|..|.||||+|+..++.+++++|++.|
T Consensus 89 ~~~~~~~v~~Ll~~g~~~~------------------~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGADVN------------------AQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHcCCCCc------------------CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999988744 88899999999999999999999998765
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-26 Score=159.02 Aligned_cols=124 Identities=26% Similarity=0.316 Sum_probs=115.9
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.|||+.|+..|+.+++++|++++++....+..|.||||+| +..++.+++++|++ .|.+++.++..|.||||+|+
T Consensus 3 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA--ARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred ccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHH--HHcCcHHHHHHHHH----cCCCCcccCCCCCcHHHHHH
Confidence 5899999999999999999999887777777799999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcc
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLI 149 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~ 149 (303)
..|+.+++++|+++|++++ .+|..|.|||++|+..++.+++++|++.|++
T Consensus 77 ~~~~~~~~~~Ll~~g~~~~------------------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 77 RNGHLEVVKLLLEAGADVN------------------AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HcChHHHHHHHHHcCCCCc------------------ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999988744 7889999999999999999999999988864
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-26 Score=170.74 Aligned_cols=149 Identities=13% Similarity=0.035 Sum_probs=116.5
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhcccc-CCCccHHHHHHhcCcHH----HHHhHhhCC
Q 043678 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVN-NEKNTALHEAVSHGNVD----LFKLKKTNN 147 (303)
Q Consensus 73 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~~A~~~~~~~----~v~~L~~~~ 147 (303)
++++|+.|+..|+.+.++.+++.+.+ ..+ ..|+||||+|+.+++.+ ++++|++.|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--------------------~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G 65 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE--------------------DKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS--------------------CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc--------------------cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCC
Confidence 56899999999999999999887633 334 67999999999999753 666666666
Q ss_pred cceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcC
Q 043678 148 LILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKG 227 (303)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~ 227 (303)
++ ++..+..|. ||||+|+..+
T Consensus 66 ad-------------------------------------------vn~~d~~g~----------------TpLh~a~~~~ 86 (186)
T 3t8k_A 66 AD-------------------------------------------IKSRTKEGT----------------TLFFPLFQGG 86 (186)
T ss_dssp CC-------------------------------------------SSCCCTTCC----------------CTHHHHHHHC
T ss_pred CC-------------------------------------------CCCCCCCCC----------------cHHHHHHHcC
Confidence 54 455555555 4488888887
Q ss_pred C------HHHHHHHhhcCCcccccccCCCC-hHHHHHHHhCCch-hhHHHhhcccc-hhcccccCCCCCCcHHHHHHhcC
Q 043678 228 D------ARTVERIISENPKCYELVDNRGW-NFLHYAMVSFHVG-QLRNLLENNSL-ARSLIDEGDAKGNTPLHVLAAVR 298 (303)
Q Consensus 228 ~------~~~v~~Ll~~g~~~~~~~~~~g~-tpl~~A~~~~~~~-~~~~ll~~~~~-~~~~~~~~d~~g~tpL~~A~~~~ 298 (303)
+ .+++++|+++|++ ++.+|..|+ ||||+|+..+..+ ....+++.++. .|++++.+|..|+||||+|++.+
T Consensus 87 ~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~ 165 (186)
T 3t8k_A 87 GNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTT
T ss_pred CcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcC
Confidence 6 6889999999999 599999999 9999999955432 11233444444 78999999999999999999998
Q ss_pred CCC
Q 043678 299 PKE 301 (303)
Q Consensus 299 ~~~ 301 (303)
+.+
T Consensus 166 ~~~ 168 (186)
T 3t8k_A 166 KPI 168 (186)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-25 Score=156.93 Aligned_cols=126 Identities=21% Similarity=0.178 Sum_probs=108.2
Q ss_pred cccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCc
Q 043678 69 VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNL 148 (303)
Q Consensus 69 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 148 (303)
....|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..++.+++++|++.|+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 71 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADV------------------NAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 4556889999999999999999999998774 4788999999999999999999999887776
Q ss_pred ceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCC
Q 043678 149 ILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGD 228 (303)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~ 228 (303)
+ ++..+. .|.||||+|+..|+
T Consensus 72 ~-------------------------------------------~~~~d~----------------~g~t~L~~A~~~~~ 92 (136)
T 2jab_A 72 D-------------------------------------------VNAVDA----------------IGFTPLHLAAFIGH 92 (136)
T ss_dssp C-------------------------------------------TTCCCT----------------TCCCHHHHHHHHTC
T ss_pred C-------------------------------------------CCcCCC----------------CCCCHHHHHHHcCC
Confidence 5 233333 34567999999999
Q ss_pred HHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 229 ARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 229 ~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++.
T Consensus 93 ~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 93 LEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 9999999999999 588999999999999999999999998875
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-27 Score=183.36 Aligned_cols=166 Identities=15% Similarity=0.131 Sum_probs=127.6
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhC
Q 043678 5 FFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFG 84 (303)
Q Consensus 5 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~ 84 (303)
++.++..|+.+.++.+...+.+ .. ..|.||||+| +..|+.+++++|++ +.+++.++..|.||||+|+..|
T Consensus 19 ~l~~~~~g~~~~~~~~~~~~~~--~~-~~g~t~L~~A--~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~g 88 (244)
T 3ui2_A 19 YLIEWKDGHSPSWVPSSYIAAD--VV-SEYETPWWTA--ARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLG 88 (244)
T ss_dssp EEEEESSCCCCEEEEGGGSCHH--HH-HHHHHHHHHH--HTTTCHHHHHHTTT-----TCCTTCBCTTSCBHHHHHHHHT
T ss_pred HHHHHHcCCCcccccccccccc--cc-cCCCCHHHHH--HHcCCHHHHHHHHc-----CCCCCCcCCCCCCHHHHHHHCC
Confidence 3344455666555554444332 22 3388999999 99999999999986 6788999999999999999999
Q ss_pred CHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhcccc-CCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhh
Q 043678 85 HFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVN-NEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILF 163 (303)
Q Consensus 85 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~ 163 (303)
+.+++++|+++|++++ .++ ..|.||||+|+..|+.+++++|++.|+++
T Consensus 89 ~~~~v~~Ll~~ga~~~------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------------- 137 (244)
T 3ui2_A 89 SDKCVRLLAEAGADLD------------------HRDMRGGLTALHMAAGYVRPEVVEALVELGADI------------- 137 (244)
T ss_dssp CHHHHHHHHHTTCCTT------------------CCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT-------------
T ss_pred CHHHHHHHHHcCCCCC------------------cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------------
Confidence 9999999999998754 666 78999999999999999999988887764
Q ss_pred hhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 164 KFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
+..+..|.||+|+++.......+.+||++|+..|+.+++++|++++.+
T Consensus 138 ------------------------------~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 138 ------------------------------EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp ------------------------------TCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred ------------------------------CCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 444555555555555444445677888888888888888888886543
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-25 Score=152.90 Aligned_cols=126 Identities=28% Similarity=0.392 Sum_probs=111.4
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
+|.||||+| +..|+.+++++|++ .+.+++..+..|.||||+|+..++.+++++|++.|+++
T Consensus 1 ~g~t~L~~A--~~~~~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------- 61 (126)
T 1n0r_A 1 NGRTPLHLA--ARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV------------- 61 (126)
T ss_dssp CCCCHHHHH--HHHTCHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-------------
T ss_pred CCccHHHHH--HHcCcHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-------------
Confidence 489999999 99999999999998 58889999999999999999999999999999998774
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
+.++..|.||||+|+..++.+++++|++.|+++
T Consensus 62 -----~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~------------------------------------------ 94 (126)
T 1n0r_A 62 -----NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV------------------------------------------ 94 (126)
T ss_dssp -----TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------------------------------------
T ss_pred -----cccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC------------------------------------------
Confidence 478899999999999999999999988776652
Q ss_pred hchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 193 ~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
+..+. .|.|||++|+..|+.+++++|+++|++
T Consensus 95 -~~~~~----------------~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 95 -NAKDK----------------NGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp -TCCCT----------------TSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred -cccCC----------------CCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 22333 455779999999999999999999985
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-25 Score=157.57 Aligned_cols=124 Identities=23% Similarity=0.280 Sum_probs=96.4
Q ss_pred ccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCC
Q 043678 68 QVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN 147 (303)
Q Consensus 68 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~ 147 (303)
.++..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..++.+++++|++.|
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 66 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP------------------NVKDHAGWTPLHEACNHGHLKVVELLLQHK 66 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS------------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 56778888888888888888888888887664 477788888888888888888888877666
Q ss_pred cceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcC
Q 043678 148 LILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKG 227 (303)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~ 227 (303)
++ ++..+. .|.||||+|+..|
T Consensus 67 ~~-------------------------------------------~~~~~~----------------~g~t~L~~A~~~~ 87 (137)
T 3c5r_A 67 AL-------------------------------------------VNTTGY----------------QNDSPLHDAAKNG 87 (137)
T ss_dssp CC-------------------------------------------TTCCCG----------------GGCCHHHHHHHTT
T ss_pred Cc-------------------------------------------ccCcCC----------------CCCCHHHHHHHcC
Confidence 54 222233 3456689999999
Q ss_pred CHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHH
Q 043678 228 DARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNL 269 (303)
Q Consensus 228 ~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~l 269 (303)
+.+++++|+++|++ ++.+|..|.||||+|+..+..+++..+
T Consensus 88 ~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l 128 (137)
T 3c5r_A 88 HVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLP 128 (137)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence 99999999999988 488899999999999888875444433
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-25 Score=163.82 Aligned_cols=138 Identities=17% Similarity=0.144 Sum_probs=103.9
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
.|.||||+| +..|+.+++++|++ +.+++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 43 ~g~t~L~~A--~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------------ 103 (183)
T 3deo_A 43 EYETPWWTA--ARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD------------ 103 (183)
T ss_dssp HHHHHHHHH--HHTTCHHHHHHHTT-----TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------------
T ss_pred CCCCHHHHH--HHcCCHHHHHHHHh-----cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------
Confidence 378888888 88888888888876 66778888888888888888888888888888887643
Q ss_pred hhhhhcccc-CCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccc
Q 043678 113 FRQMIRMVN-NEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKN 191 (303)
Q Consensus 113 ~~~~~~~~~-~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 191 (303)
..+ ..|+||||+|+..|+.+++++|++.|+++
T Consensus 104 ------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~----------------------------------------- 136 (183)
T 3deo_A 104 ------HRDMRGGLTALHMAAGYVRPEVVEALVELGADI----------------------------------------- 136 (183)
T ss_dssp ------CCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCT-----------------------------------------
T ss_pred ------cCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCC-----------------------------------------
Confidence 566 77888888888888888888877666653
Q ss_pred hhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhc
Q 043678 192 LIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE 238 (303)
Q Consensus 192 ~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~ 238 (303)
+..+..|.||+++++.......+.++|++|++.|..+++++|.++
T Consensus 137 --~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 137 --EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp --TCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred --cCCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence 344445555555444444444566788888888888888888764
|
| >2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-25 Score=177.64 Aligned_cols=122 Identities=18% Similarity=0.173 Sum_probs=103.8
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhh------hcccCCchhhhhhhhcc---cchhhHHHHHHHHHhCchhhhccccCC
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLL------TAKAKNTILHINIISSE---RENVSTKFVEEILEKCPALLLQVNAKG 73 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~------~~~~g~t~Lh~A~~~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~g 73 (303)
++|+.|+..|+.+.++.|++.|++... .+..|.||||+| +.. |+.+++++|++ .|++++.+|..|
T Consensus 153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A--~~~~~~~~~~iv~~Ll~----~gadvn~~d~~G 226 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLA--VKVANQASLPLVDFIIQ----NGGHLDAKAADG 226 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHH--HHTCCTTTHHHHHHHHH----HSSCTTCCCTTC
T ss_pred HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHH--HHhcccCcHHHHHHHHh----cCCCCCCCCCCC
Confidence 469999999999999999988877654 466789999999 765 88899999988 588899999999
Q ss_pred CcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCc
Q 043678 74 DTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNL 148 (303)
Q Consensus 74 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 148 (303)
.||||+|+..|+.+++++|+++|+++ +.+|..|.|||++|+..++.+++++|++.++
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~~gad~------------------~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga 283 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLKGRALV------------------GTVNEAGETALDIARKKHHKECEELLEQAQA 283 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCC------------------SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence 99999999999999999999988874 4788899999999999999888888665544
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-25 Score=175.19 Aligned_cols=160 Identities=21% Similarity=0.196 Sum_probs=128.9
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
.+.+++..+ +..|+.+.+..+.. .+. ..+..|.||||+|+..|+.+++++|++ |++
T Consensus 14 ~~~~~~l~~--~~~g~~~~~~~~~~----~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-------------- 69 (244)
T 3ui2_A 14 EGAMEYLIE--WKDGHSPSWVPSSY----IAA---DVVSEYETPWWTAARKADEQALSQLLE-DRD-------------- 69 (244)
T ss_dssp TTEEEEEEE--ESSCCCCEEEEGGG----SCH---HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCC--------------
T ss_pred CCccHHHHH--HHcCCCcccccccc----ccc---ccccCCCCHHHHHHHcCCHHHHHHHHc-CCC--------------
Confidence 366788888 88888777666544 333 344678999999999999999999999 776
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccch
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 192 (303)
++.+|..|.||||+|+..|+.+++++|++.|++++
T Consensus 70 ----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~----------------------------------------- 104 (244)
T 3ui2_A 70 ----VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD----------------------------------------- 104 (244)
T ss_dssp ----TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-----------------------------------------
T ss_pred ----CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-----------------------------------------
Confidence 44889999999999999999999999888877532
Q ss_pred hchhh-hcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhh
Q 043678 193 IKETD-QYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLE 271 (303)
Q Consensus 193 ~~~~~-~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~ 271 (303)
..+ . .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++
T Consensus 105 --~~~~~----------------~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~~--------- 156 (244)
T 3ui2_A 105 --HRDMR----------------GGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILK--------- 156 (244)
T ss_dssp --CCCSS----------------SCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHHT---------
T ss_pred --cCCCC----------------CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHHh---------
Confidence 222 2 356779999999999999999999999 58999999999999986433
Q ss_pred cccchhcccccCCCCCCcHHHHHHhcCCCC
Q 043678 272 NNSLARSLIDEGDAKGNTPLHVLAAVRPKE 301 (303)
Q Consensus 272 ~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~ 301 (303)
...+.|||++|++.|+.+
T Consensus 157 ------------~~~~~~~l~~a~~~g~~~ 174 (244)
T 3ui2_A 157 ------------TTPKGNPMQFGRRIGLEK 174 (244)
T ss_dssp ------------TCCCSSHHHHHHHHHHHH
T ss_pred ------------ccCCCCHHHHHHHcChHH
Confidence 245778888888877644
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.4e-26 Score=168.74 Aligned_cols=133 Identities=23% Similarity=0.264 Sum_probs=112.2
Q ss_pred cccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCc
Q 043678 69 VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNL 148 (303)
Q Consensus 69 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 148 (303)
.+..|.||||+|+..|+.+++++|++ |++ ++..|..|+||||+|+..|+.+++++|++.|+
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~------------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga 100 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRD------------------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 100 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSC------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCC------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 45688999999999999999999999 766 44889999999999999999999999888777
Q ss_pred ceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhh-hcCCCcccccccccccCCcccHHhHHHhcC
Q 043678 149 ILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETD-QYGWTPIQSTSNIADKDRKMTALHLAAGKG 227 (303)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~ 227 (303)
+++ ..+ . .|.||||+|+..|
T Consensus 101 ~~~-------------------------------------------~~~~~----------------~g~tpL~~A~~~~ 121 (183)
T 3deo_A 101 DLD-------------------------------------------HRDMR----------------GGLTALHMAAGYV 121 (183)
T ss_dssp CTT-------------------------------------------CCCSS----------------SSCCHHHHHHHTT
T ss_pred CCC-------------------------------------------cCCCC----------------CCCCHHHHHHhcC
Confidence 532 222 2 4567799999999
Q ss_pred CHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCC
Q 043678 228 DARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKE 301 (303)
Q Consensus 228 ~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~ 301 (303)
+.+++++|+++|++ ++.+|..|+||||+|++.++. ..+.+||++|++.|+.+
T Consensus 122 ~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~---------------------~~~~~~l~~a~~~~~~~ 173 (183)
T 3deo_A 122 RPEVVEALVELGAD-IEVEDERGLTALELAREILKT---------------------TPKGNPMQFGRRIGLEK 173 (183)
T ss_dssp CHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT---------------------CCCCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC---------------------cccccHHHHHHHcCHHH
Confidence 99999999999999 589999999999999986653 34678888888877654
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-25 Score=153.87 Aligned_cols=114 Identities=19% Similarity=0.140 Sum_probs=103.7
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
++|||.|+..|+.+++++|++.+.+....+..|.||||+| +..|+.+++++|++ .|.+++.+|..|.||||+|+
T Consensus 8 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYA--ADCGQLEILEFLLL----KGADINAPDKHHITPLLSAV 81 (123)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHH--HHTTCHHHHHHHHT----TTCCTTCCCTTSCCHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHH--HHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHHH
Confidence 4899999999999999999999988777887899999999 99999999999998 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHH
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDL 139 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~ 139 (303)
..|+.+++++|+++|++++ .+|..|.|||++|...+..++
T Consensus 82 ~~~~~~~v~~Ll~~ga~~~------------------~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADKT------------------VKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp HHTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHCCCHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCC------------------CcCCCCCCHHHHhCCHHHHHH
Confidence 9999999999999998754 889999999999955444433
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-25 Score=157.82 Aligned_cols=122 Identities=21% Similarity=0.209 Sum_probs=110.1
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|++.|.+....+..|.||||+| +..|+.+++++|++ .|.+++.++..|.||||+|+
T Consensus 11 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEA--CNHGHLKVVELLLQ----HKALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCGGGCCHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCcccCcCCCCCCHHHHHH
Confidence 5899999999999999999999988777788899999999 99999999999998 79999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCC
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNN 147 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~ 147 (303)
..|+.+++++|+++|++++ .+|..|.|||++|+..+..+++++|.+.+
T Consensus 85 ~~~~~~~v~~Ll~~ga~~~------------------~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 85 KNGHVDIVKLLLSYGASRN------------------AVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HTTCHHHHHHHHHTTCCTT------------------CCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HcCCHHHHHHHHHcCCCCC------------------CCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 9999999999999988754 88999999999999999988888766543
|
| >2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.5e-24 Score=169.41 Aligned_cols=147 Identities=17% Similarity=0.013 Sum_probs=112.5
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhc---CcHHHHHhHhhCCc
Q 043678 72 KGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSH---GNVDLFKLKKTNNL 148 (303)
Q Consensus 72 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~---~~~~~v~~L~~~~~ 148 (303)
.+.++|+.|+..|+.+.++.|++.|++++.... ....+..|.||||+|+.. ++.+++++|++.|+
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~------------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga 217 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP------------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 217 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE------------CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSS
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCC------------CcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCC
Confidence 345789999999999999999999887541000 001578999999999997 78888888776666
Q ss_pred ceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCC
Q 043678 149 ILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGD 228 (303)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~ 228 (303)
+ ++..|.. |.||||+|+..|+
T Consensus 218 d-------------------------------------------vn~~d~~----------------G~TpLh~A~~~g~ 238 (301)
T 2b0o_E 218 H-------------------------------------------LDAKAAD----------------GNTALHYAALYNQ 238 (301)
T ss_dssp C-------------------------------------------TTCCCTT----------------CCCHHHHHHHTTC
T ss_pred C-------------------------------------------CCCCCCC----------------CCCHHHHHHHcCC
Confidence 4 3344443 4566999999999
Q ss_pred HHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCC
Q 043678 229 ARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPK 300 (303)
Q Consensus 229 ~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~ 300 (303)
.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++. |++ .|.||||+|++.|+.
T Consensus 239 ~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~----ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 239 PDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQA----QAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHH----HHH------TTSSCCC--------
T ss_pred HHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh----cCC------CCCChhHHHHhcCCc
Confidence 9999999999999 589999999999999999999999888884 443 589999999999874
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-25 Score=168.38 Aligned_cols=134 Identities=24% Similarity=0.216 Sum_probs=108.8
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhC-chhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKC-PALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~-~~~~~~~~~~g~tpL~~A 80 (303)
.||||.|+..|+.+++++|++.|++....+..|.||||+| +..|+.+++++|++ . |.+++.+|..|.||||+|
T Consensus 74 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~~g~~~~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWA--CHGGHKDIVEMLFT----QPNIELNQQNKLGDTALHAA 147 (222)
T ss_dssp SCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHTT----STTCCCCCCCTTSCCHHHHH
T ss_pred ccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHH--HHcCCHHHHHHHHc----CCCCCccccCCCCCCHHHHH
Confidence 5899999999999999999999988777788899999999 99999999999998 5 999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccc
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKT 159 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~ 159 (303)
+..|+.+++++|+++|+++ +.+|..|.|||++|+..++.++++.|...++.....+..++.
T Consensus 148 ~~~~~~~~v~~Ll~~ga~~------------------~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~l 208 (222)
T 3ehr_A 148 AWKGYADIVQLLLAKGART------------------DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYL 208 (222)
T ss_dssp HHHTCHHHHHHHHHHTCCS------------------CCCCTTSCCHHHHCCSHHHHHHHC------------------
T ss_pred HHcCCHHHHHHHHHcCCCC------------------ccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhhc
Confidence 9999999999999999875 488999999999999999999999999988877666665543
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.8e-24 Score=163.55 Aligned_cols=140 Identities=23% Similarity=0.220 Sum_probs=106.6
Q ss_pred hccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhC
Q 043678 67 LQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTN 146 (303)
Q Consensus 67 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~ 146 (303)
+..+..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 128 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV------------------NGLDKAGSTALYWACHGGHKDIVEMLFTQ 128 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHTTS
T ss_pred cccccccccccccccccCcHHHHHHHHhCCCCc------------------cccCCCCCCHHHHHHHcCCHHHHHHHHcC
Confidence 446778999999999999999999999998774 47889999999999999999999998876
Q ss_pred -CcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHh
Q 043678 147 -NLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAG 225 (303)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~ 225 (303)
|+++ +..+. .|.||||+|+.
T Consensus 129 ~g~~~-------------------------------------------~~~d~----------------~g~tpL~~A~~ 149 (222)
T 3ehr_A 129 PNIEL-------------------------------------------NQQNK----------------LGDTALHAAAW 149 (222)
T ss_dssp TTCCC-------------------------------------------CCCCT----------------TSCCHHHHHHH
T ss_pred CCCCc-------------------------------------------cccCC----------------CCCCHHHHHHH
Confidence 6653 33333 34567999999
Q ss_pred cCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCC
Q 043678 226 KGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGN 288 (303)
Q Consensus 226 ~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~ 288 (303)
.|+.+++++|+++|++ ++.+|..|.||||+|+..++.++++.+++ .++.....+..|+
T Consensus 150 ~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~----~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 150 KGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQG----TDAVRTLSNAEDY 207 (222)
T ss_dssp HTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC---------------------
T ss_pred cCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhc----cchhhhccchhhh
Confidence 9999999999999999 58999999999999999999766666665 4565665555443
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-23 Score=145.54 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=33.0
Q ss_pred cCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCc
Q 043678 71 AKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNL 148 (303)
Q Consensus 71 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 148 (303)
..|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..++.+++++|++.|+
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 64 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDV------------------NRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCT------------------TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCc------------------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 34556666666666666666666655442 2455555566666655555555555444443
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=133.47 Aligned_cols=93 Identities=28% Similarity=0.397 Sum_probs=81.3
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
+|.||||+| +..|+.+++++|++ .|.+++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 1 ~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------------ 62 (93)
T 1n0q_A 1 NGRTPLHLA--ARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN------------ 62 (93)
T ss_dssp --CCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred CCCcHHHHH--HHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------
Confidence 388999999 99999999999988 788999999999999999999999999999999887744
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcc
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLI 149 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~ 149 (303)
.+|..|.||||+|+..|+.+++++|++.|++
T Consensus 63 ------~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 63 ------AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp ------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 7888899999999999999999998888763
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-23 Score=161.99 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=111.9
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhh------hhcccCCchhhhhhhhcc---cchhhHHHHHHHHHhCchhhhccccCC
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESL------LTAKAKNTILHINIISSE---RENVSTKFVEEILEKCPALLLQVNAKG 73 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~------~~~~~g~t~Lh~A~~~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~g 73 (303)
++|+.|+..|+.+.++.+++.|.+.. ..+..|.||||+| +.. |+.+++++|++ .|++++.+|..|
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A--~~~~~~~~~~~v~~Ll~----~ga~in~~d~~g 205 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLA--VRSVDRTSLHIVDFLVQ----NSGNLDKQTGKG 205 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHH--HHHCCTTTHHHHHHHHH----HCSCTTCCCTTC
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHH--HHhcccchHHHHHHHHH----CCCCccccCCCC
Confidence 57999999999999999999987643 2356699999999 888 89999999999 699999999999
Q ss_pred CcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcc
Q 043678 74 DTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLI 149 (303)
Q Consensus 74 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~ 149 (303)
.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++.|+.
T Consensus 206 ~TpLh~A~~~g~~~~v~~Ll~~gad~~------------------~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 206 STALHYCCLTDNAECLKLLLRGKASIE------------------IANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCC------------------CccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999998854 8899999999999999999999999987764
|
| >3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-22 Score=165.15 Aligned_cols=122 Identities=18% Similarity=0.238 Sum_probs=113.4
Q ss_pred hhHHHHHhc-CCChhHHHHHHHHHHhhhhc--ccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHH
Q 043678 3 LNFFKAASA-GNSEPFKDMARDVIESLLTA--KAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHL 79 (303)
Q Consensus 3 ~~L~~A~~~-g~~~~v~~ll~~~~~~~~~~--~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~ 79 (303)
++||.|+.. |+.++++.|+++|++.+..+ ..|.||||+| +..|+.+++++|++ .|++++.+|..|.||||+
T Consensus 201 t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~A--a~~g~~~iv~~LL~----~Gadvn~~d~~G~TpLh~ 274 (368)
T 3jue_A 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQA--TAANSLLACEFLLQ----NGANVNQADSAGRGPLHH 274 (368)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHH
T ss_pred cHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHH--HHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHH
Confidence 699999999 99999999999998877665 6799999999 99999999999999 799999999999999999
Q ss_pred HHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCc
Q 043678 80 AAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNL 148 (303)
Q Consensus 80 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 148 (303)
|+..|+.+++++|+++|++++ ..|..|.||||+|+..++.+++++|+..+.
T Consensus 275 A~~~g~~~~v~~LL~~Gad~~------------------~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGADLG------------------ARDSEGRDPLTIAMETANADIVTLLRLAKM 325 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHcCcHHHHHHHHHCcCCCC------------------CcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 999999999999999998854 889999999999999999999999886553
|
| >3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-22 Score=161.50 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=107.1
Q ss_pred cCCCcHHHHHHHh-CCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhcccc--CCCccHHHHHHhcCcHHHHHhHhhCC
Q 043678 71 AKGDTPLHLAAKF-GHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVN--NEKNTALHEAVSHGNVDLFKLKKTNN 147 (303)
Q Consensus 71 ~~g~tpL~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~t~l~~A~~~~~~~~v~~L~~~~ 147 (303)
..+.||||+|+.. ++.+++++|++.|++++ ..+ ..|.||||+|+..|+.+++++|++.|
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn------------------~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G 258 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGADVN------------------WVNGGQDNATPLIQATAANSLLACEFLLQNG 258 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTT------------------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCCCC------------------ccccccCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 3456899999999 99999999999998754 555 78999999999999999999988777
Q ss_pred cceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcC
Q 043678 148 LILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKG 227 (303)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~ 227 (303)
++ ++..|. .|.||||+|+..|
T Consensus 259 ad-------------------------------------------vn~~d~----------------~G~TpLh~A~~~g 279 (368)
T 3jue_A 259 AN-------------------------------------------VNQADS----------------AGRGPLHHATILG 279 (368)
T ss_dssp CC-------------------------------------------TTCCCT----------------TSCCHHHHHHHHT
T ss_pred CC-------------------------------------------CCCCCC----------------CCCCHHHHHHHcC
Confidence 75 333333 3456699999999
Q ss_pred CHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcC
Q 043678 228 DARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVR 298 (303)
Q Consensus 228 ~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~ 298 (303)
+.+++++|+++|++ ++..|..|.||||+|+..++.+++++|++.... +++....+..+.|+++++....
T Consensus 280 ~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~-~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 280 HTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMR-EAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred cHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-cccccccCCCCCCHHHHHHHHH
Confidence 99999999999999 589999999999999999999999998876543 3445566778889988776543
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-22 Score=131.16 Aligned_cols=90 Identities=28% Similarity=0.337 Sum_probs=86.0
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|++.|++....+..|.||||+| +..|+.+++++|++ .|.+++.+|..|.||||+|+
T Consensus 3 ~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A--~~~~~~~~v~~Ll~----~ga~~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA--ARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAA 76 (93)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHH
Confidence 5899999999999999999999998888888899999999 99999999999999 89999999999999999999
Q ss_pred HhCCHHHHHHHHHHhH
Q 043678 82 KFGHFDIVRVLIERAK 97 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~ 97 (303)
..|+.+++++|+++|+
T Consensus 77 ~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 77 RNGHLEVVKLLLEAGA 92 (93)
T ss_dssp HTTCHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCC
Confidence 9999999999999885
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-21 Score=133.98 Aligned_cols=108 Identities=27% Similarity=0.291 Sum_probs=95.7
Q ss_pred hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHH
Q 043678 29 LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELEN 108 (303)
Q Consensus 29 ~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 108 (303)
..+..|.||||+| +..|+.+++++|++ .+.+++.++..|.||||+|+..++.+++++|+++|+++
T Consensus 4 ~~d~~g~t~L~~A--~~~~~~~~~~~Ll~----~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--------- 68 (115)
T 2l6b_A 4 WGSKDGNTPLHNA--AKNGHAEEVKKLLS----KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV--------- 68 (115)
T ss_dssp CCSCSSCCHHHHH--HHHTCHHHHHHHTT----TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT---------
T ss_pred ccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC---------
Confidence 4566799999999 99999999999998 78889999999999999999999999999999998774
Q ss_pred HHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 109 RIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 109 ~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+.+|..|.||||+|+..++.+++++|++.|++++..+..+.++
T Consensus 69 ---------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 69 ---------NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp ---------TCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred ---------cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 4788899999999999999999999999999988888777664
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-20 Score=147.35 Aligned_cols=125 Identities=18% Similarity=0.111 Sum_probs=106.9
Q ss_pred CchhhhhhhhcccchhhHHHHHHHHHhCchh------hhccccCCCcHHHHHHHh---CCHHHHHHHHHHhHHhhcCchH
Q 043678 35 NTILHINIISSERENVSTKFVEEILEKCPAL------LLQVNAKGDTPLHLAAKF---GHFDIVRVLIERAKLAQRGDEE 105 (303)
Q Consensus 35 ~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~------~~~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~ 105 (303)
.++|+.| +..|+.+.++.++. .|.+ ++..+..|.||||+|+.. |+.+++++|+++|+++
T Consensus 131 l~~l~~a--~~~~d~~~~~~ll~----~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i------ 198 (278)
T 1dcq_A 131 LHSLCEA--VKTRDIFGLLQAYA----DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL------ 198 (278)
T ss_dssp HHHHHHH--HHTTCHHHHHHHHH----TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT------
T ss_pred hhhhhhH--hhhcccHHHHHHHH----hhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc------
Confidence 3589999 99999999999888 6776 444578899999999999 8999999999999875
Q ss_pred HHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHH
Q 043678 106 LENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKL 185 (303)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (303)
+.+|..|.||||+|+..|+.+++++|++.|++
T Consensus 199 ------------n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad------------------------------------ 230 (278)
T 1dcq_A 199 ------------DKQTGKGSTALHYCCLTDNAECLKLLLRGKAS------------------------------------ 230 (278)
T ss_dssp ------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------------------------------
T ss_pred ------------cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------------------------
Confidence 48899999999999999999999998888776
Q ss_pred HHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcc
Q 043678 186 LEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKC 242 (303)
Q Consensus 186 l~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~ 242 (303)
++..|.. |.||||+|+..|+.+++++|+++|++.
T Consensus 231 -------~~~~d~~----------------g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 231 -------IEIANES----------------GETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp -------TTCCCTT----------------SCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred -------CCCccCC----------------CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 3333443 456699999999999999999999864
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-20 Score=128.35 Aligned_cols=109 Identities=19% Similarity=0.178 Sum_probs=92.3
Q ss_pred cccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhh
Q 043678 119 MVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQ 198 (303)
Q Consensus 119 ~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 198 (303)
.+|..|.||||+|+..|+.+++++|++.++++ +..+.
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------------------------------------------~~~d~ 40 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-------------------------------------------NARSK 40 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-------------------------------------------SCCCS
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------------------------------------------CCcCC
Confidence 57889999999999999999999988777652 33333
Q ss_pred cCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhc
Q 043678 199 YGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARS 278 (303)
Q Consensus 199 ~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~ 278 (303)
.|.||||+|+..++.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++ .|+
T Consensus 41 ----------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~----~ga 99 (115)
T 2l6b_A 41 ----------------DGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDA----KGA 99 (115)
T ss_dssp ----------------SSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHHHHTTTCHHHHHHHHT----TSS
T ss_pred ----------------CCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHH----cCC
Confidence 345669999999999999999999999 58999999999999999999888888887 588
Q ss_pred ccccCCCCCCcHH
Q 043678 279 LIDEGDAKGNTPL 291 (303)
Q Consensus 279 ~~~~~d~~g~tpL 291 (303)
+++.++..|.+|-
T Consensus 100 ~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 100 DVNARSWGSSHHH 112 (115)
T ss_dssp SHHHHSCCCC---
T ss_pred CCCcCCccccccc
Confidence 8999999999884
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-19 Score=121.26 Aligned_cols=90 Identities=23% Similarity=0.333 Sum_probs=82.3
Q ss_pred hcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHH
Q 043678 30 TAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENR 109 (303)
Q Consensus 30 ~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~ 109 (303)
.+.+|.||||+| +..|+.+++++|++ .|.+++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 20 ~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~---------- 83 (110)
T 2zgd_A 20 MGSDLGKKLLEA--ARAGQDDEVRILMA----NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV---------- 83 (110)
T ss_dssp --CCHHHHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------
T ss_pred cCCccchHHHHH--HHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc----------
Confidence 344599999999 99999999999998 79999999999999999999999999999999998875
Q ss_pred HHHhhhhhccccCCCccHHHHHHhcCcHHHHHhH
Q 043678 110 IEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLK 143 (303)
Q Consensus 110 ~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L 143 (303)
+.+|..|.||||+|+..|+.+++++|
T Consensus 84 --------~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 84 --------XAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp --------TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred --------cccccCCCcHHHHHHHcCCHHHHHHh
Confidence 48889999999999999999999886
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-18 Score=116.19 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=80.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.+|||.|+..|+.+++++|++.|++....+..|.||||+| +..|+.+++++|++ .|.+++.+|..|.||||+|+
T Consensus 25 ~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A--~~~~~~~~v~~Ll~----~ga~~~~~d~~g~tpl~~A~ 98 (110)
T 2zgd_A 25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLA--ARNGHLEVVKLLLE----AGADVXAQDKFGKTAFDISI 98 (110)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCccccccCCCcHHHHHH
Confidence 4799999999999999999999988777788899999999 99999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHH
Q 043678 82 KFGHFDIVRVL 92 (303)
Q Consensus 82 ~~~~~~~v~~L 92 (303)
..|+.+++++|
T Consensus 99 ~~~~~~~~~~L 109 (110)
T 2zgd_A 99 DNGNEDLAEIL 109 (110)
T ss_dssp HHTCHHHHHHH
T ss_pred HcCCHHHHHHh
Confidence 99999999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 303 | ||||
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 2e-13 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 5e-13 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 8e-12 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 3e-08 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 6e-08 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 6e-07 | |
| d1sw6a_ | 301 | d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker | 2e-13 | |
| d1sw6a_ | 301 | d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker | 3e-08 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 1e-12 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 2e-09 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 3e-07 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 5e-07 | |
| d1k1aa_ | 228 | d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: | 2e-10 | |
| d1k1aa_ | 228 | d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: | 3e-05 | |
| d1k1aa_ | 228 | d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: | 0.002 | |
| d1ixva_ | 229 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 3e-10 | |
| d1ixva_ | 229 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 4e-09 | |
| d2fo1e1 | 277 | d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele | 3e-10 | |
| d2fo1e1 | 277 | d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele | 5e-08 | |
| d2fo1e1 | 277 | d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele | 2e-04 | |
| d1oy3d_ | 255 | d.211.1.1 (D:) Transcription factor inhibitor I-ka | 9e-10 | |
| d1oy3d_ | 255 | d.211.1.1 (D:) Transcription factor inhibitor I-ka | 1e-05 | |
| d1iknd_ | 221 | d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien | 5e-08 | |
| d1iknd_ | 221 | d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien | 2e-04 | |
| d1iknd_ | 221 | d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien | 0.002 | |
| d2ajaa1 | 346 | a.118.24.1 (A:3-348) Hypothetical protein LPG2416 | 5e-08 | |
| d2ajaa1 | 346 | a.118.24.1 (A:3-348) Hypothetical protein LPG2416 | 2e-04 | |
| d2ajaa1 | 346 | a.118.24.1 (A:3-348) Hypothetical protein LPG2416 | 2e-04 | |
| d2ajaa1 | 346 | a.118.24.1 (A:3-348) Hypothetical protein LPG2416 | 0.001 | |
| d1uoha_ | 223 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 5e-08 | |
| d1uoha_ | 223 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 2e-06 | |
| d1uoha_ | 223 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 0.003 | |
| d1uoha_ | 223 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 0.004 | |
| d1s70b_ | 291 | d.211.1.1 (B:) Myosin phosphatase targeting subuni | 2e-07 | |
| d1s70b_ | 291 | d.211.1.1 (B:) Myosin phosphatase targeting subuni | 4e-06 | |
| d1ot8a_ | 209 | d.211.1.1 (A:) Neurogenic locus notch receptor dom | 1e-06 | |
| d1ot8a_ | 209 | d.211.1.1 (A:) Neurogenic locus notch receptor dom | 3e-04 | |
| d1ihba_ | 156 | d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens | 9e-06 | |
| d1ihba_ | 156 | d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens | 1e-04 | |
| d1bd8a_ | 156 | d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma | 5e-05 | |
| d1bd8a_ | 156 | d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma | 0.001 | |
| d1awcb_ | 153 | d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 { | 6e-05 | |
| d1awcb_ | 153 | d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 { | 2e-04 | |
| d1bi7b_ | 125 | d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma | 2e-04 | |
| d1dcqa1 | 154 | d.211.1.1 (A:369-522) Pyk2-associated protein beta | 8e-04 | |
| d1dcqa1 | 154 | d.211.1.1 (A:369-522) Pyk2-associated protein beta | 0.002 | |
| d1myoa_ | 118 | d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) | 9e-04 |
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.7 bits (164), Expect = 2e-13
Identities = 46/258 (17%), Positives = 91/258 (35%), Gaps = 31/258 (12%)
Query: 51 STKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRI 110
V+ +L++ A N K +TPLH+AA+ GH ++ + L++
Sbjct: 12 HLPIVKNLLQRG-ASPNVSNVKVETPLHMAARAGHTEVAKYLLQN--------------- 55
Query: 111 EAFRQMIRMVNNEKNTALHEAVSHGNVDLFK-LKKTNNLILIFRDSDEKTNILFKFRHLD 169
+ + + T LH A G+ ++ K L + N + + +
Sbjct: 56 ---KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV 112
Query: 170 LFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPI-----QSTSNIADKDRK-MTALHLA 223
+ A+ + +K + +YG + + ++ + +T LH+A
Sbjct: 113 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA 172
Query: 224 AGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEG 283
+ V+ ++ G+ LH A V R+LL+ +
Sbjct: 173 VHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYG----GSANAE 227
Query: 284 DAKGNTPLHVLAAVRPKE 301
+G TPLH+ A E
Sbjct: 228 SVQGVTPLHLAAQEGHAE 245
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.5 bits (161), Expect = 5e-13
Identities = 49/236 (20%), Positives = 83/236 (35%), Gaps = 30/236 (12%)
Query: 75 TPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSH 134
TPLH+A+ GH IV+ L++ RG + N + T LH A
Sbjct: 2 TPLHVASFMGHLPIVKNLLQ------RGAS------------PNVSNVKVETPLHMAARA 43
Query: 135 GNVDLFKLKKTNNLILIFRDSDEKTNILF--KFRHLD----LFRIQTNSIYAALPKLLEK 188
G+ ++ K N + + D++T + + H + L N A
Sbjct: 44 GHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPL 103
Query: 189 KKNLIKETDQYGWTPIQSTSNIADKDRK-MTALHLAAGKGDARTVERIISENPKCYELVD 247
+ + ++ ++ A +K T LH+AA G R E ++ +
Sbjct: 104 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAG 162
Query: 248 NRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEFH 303
G LH A+ ++ ++ LL G TPLH+ A E
Sbjct: 163 KNGLTPLHVAVHHNNLDIVKLLLPRG----GSPHSPAWNGYTPLHIAAKQNQVEVA 214
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.1 bits (152), Expect = 8e-12
Identities = 47/254 (18%), Positives = 92/254 (36%), Gaps = 46/254 (18%)
Query: 57 EILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERA---------------KLAQR 101
E+L + A G TPLH+A + DIV++L+ R A++
Sbjct: 149 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ 208
Query: 102 GDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161
E+ + + + + T LH A G+ ++ L + + T +
Sbjct: 209 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPL 268
Query: 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALH 221
+ + + +L K ++ T + G+TP LH
Sbjct: 269 HLVAQEGHV----------PVADVLIKHGVMVDATTRMGYTP----------------LH 302
Query: 222 LAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLID 281
+A+ G+ + V+ ++ ++ G++ LH A H + LL+N + +
Sbjct: 303 VASHYGNIKLVKFLL-QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG----ASPN 357
Query: 282 EGDAKGNTPLHVLA 295
E + G TPL +
Sbjct: 358 EVSSDGTTPLAIAK 371
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.9 bits (123), Expect = 3e-08
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 217 MTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLA 276
+T LH+A+ G V+ ++ + + + LH A + H + LL+N
Sbjct: 1 LTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNK--- 56
Query: 277 RSLIDEGDAKGNTPLHVLAAVRPKEFH 303
+ ++ TPLH A +
Sbjct: 57 -AKVNAKAKDDQTPLHCAARIGHTNMV 82
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.1 bits (121), Expect = 6e-08
Identities = 50/254 (19%), Positives = 86/254 (33%), Gaps = 52/254 (20%)
Query: 61 KCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMV 120
+ A + KG TPLH+AAK+G + +L+ER
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER------------------DAHPNAA 161
Query: 121 NNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYA 180
T LH AV H N+D+ KL + T + + + ++
Sbjct: 162 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS----- 216
Query: 181 ALPKLLEKKKNLIKETDQYGWTPI------------------QSTSNIADKDRKMTALHL 222
L + G TP+ Q+ N+ +K +T LHL
Sbjct: 217 -----LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS-GLTPLHL 270
Query: 223 AAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDE 282
A +G + +I + G+ LH A ++ ++ LL++ + ++
Sbjct: 271 VAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQAD----VNA 325
Query: 283 GDAKGNTPLHVLAA 296
G +PLH A
Sbjct: 326 KTKLGYSPLHQAAQ 339
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (113), Expect = 6e-07
Identities = 38/266 (14%), Positives = 82/266 (30%), Gaps = 55/266 (20%)
Query: 8 AASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLL 67
A N + K + A T LHI ++ E L +
Sbjct: 172 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV------ARSLLQYGGSAN 225
Query: 68 QVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTA 127
+ +G TPLHLAA+ GH ++V + + + + N T
Sbjct: 226 AESVQGVTPLHLAAQEGHAEMVA------------------LLLSKQANGNLGNKSGLTP 267
Query: 128 LHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLE 187
LH G+V + + + +++ T + + ++ ++ +
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH-------- 319
Query: 188 KKKNLIKETDQYGWTPIQSTS------------------NIADKDRKMTALHLAAGKGDA 229
+ + + G++P+ + N D T L +A G
Sbjct: 320 --QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT-TPLAIAKRLGYI 376
Query: 230 RTVE--RIISENPKCYELVDNRGWNF 253
+ +++++ + D +F
Sbjct: 377 SVTDVLKVVTDETSFVLVSDKHRMSF 402
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.0 bits (162), Expect = 2e-13
Identities = 33/265 (12%), Positives = 80/265 (30%), Gaps = 46/265 (17%)
Query: 22 RDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAK----GDTPL 77
+++ SL + + ++ ++E+ + P L +N G+TPL
Sbjct: 52 QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL 111
Query: 78 HLAAKFGHFDIVRVLIERAKLAQRGDEE-------------------LENRIEAFRQMIR 118
H + ++V+ L++ GD E ++ +
Sbjct: 112 HWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 171
Query: 119 MVNNEKNTALHEAVSHGNVDL------FKLKKTNNLILIFRDSDEKTNILFKFRHLDLFR 172
+ ++ T LH + + + L I+ ++ ++ K +
Sbjct: 172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 231
Query: 173 IQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTV 232
+ L N++ D G T L++AA G+ V
Sbjct: 232 GERKDSILENLDLKWIIANMLNAQDSNGDTC----------------LNIAARLGNISIV 275
Query: 233 ERIISENPKCYELVDNRGWNFLHYA 257
+ ++ + + G + +
Sbjct: 276 DALLDYGADP-FIANKSGLRPVDFG 299
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.6 bits (122), Expect = 3e-08
Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 13/177 (7%)
Query: 120 VNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSD-EKTNILFKFRHLDLFRIQTNSI 178
V+ NT LH S N++L K L+ S+ + + + + + N
Sbjct: 103 VDEHGNTPLHWLTSIANLELVKH-------LVKHGSNRLYGDNMGESCLVKAVKSVNNYD 155
Query: 179 YAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE 238
LL+ + D T + + MT AA + I+ +
Sbjct: 156 SGTFEALLDYLYPCLILEDSMNRTIL----HHIIITSGMTGCSAAAKYYLDILMGWIVKK 211
Query: 239 NPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLA 295
+ + N + + L NL + ++++ D+ G+T L++ A
Sbjct: 212 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKW-IIANMLNAQDSNGDTCLNIAA 267
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.6 bits (156), Expect = 1e-12
Identities = 44/239 (18%), Positives = 77/239 (32%), Gaps = 36/239 (15%)
Query: 72 KGDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHE 130
+ + L A + D+V+ L+E A + + +E T LH
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE------------------GGWTPLHN 45
Query: 131 AVSHGNVDLFKLKKTNNLILIFRDSDEKTNILF-----------------KFRHLDLFRI 173
AV D+ +L + + R + T L + F
Sbjct: 46 AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105
Query: 174 QTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVE 233
T + AA+ ++ K L K + TAL AA KG ++
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165
Query: 234 RIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLH 292
++ E DN G N L +A++S + + + ++ +G TPL
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (132), Expect = 2e-09
Identities = 34/203 (16%), Positives = 63/203 (31%), Gaps = 29/203 (14%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALH 129
+ G T AA +G ++ L +R N ++ + TAL
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKR--------GANVNLRRKTKEDQERLRKGGATALM 153
Query: 130 EAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKK 189
+A G+V++ K+ L+ + + + + +S A+ LL
Sbjct: 154 DAAEKGHVEVLKI-----LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208
Query: 190 KNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNR 249
+ + G TP L LA K V+R++ + D+
Sbjct: 209 GADVNVRGERGKTP----------------LILAVEKKHLGLVQRLLEQEHIEINDTDSD 252
Query: 250 GWNFLHYAMVSFHVGQLRNLLEN 272
G L A+ L +
Sbjct: 253 GKTALLLAVELKLKKIAELLCKR 275
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (114), Expect = 3e-07
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 24/127 (18%)
Query: 23 DVIESLLT-------AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDT 75
+V++ LL A + ++ + + +L A + +G T
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221
Query: 76 PLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHG 135
PL LA + H +V+ L+E+ + I +++ TAL AV
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEHIE-----------------INDTDSDGKTALLLAVELK 264
Query: 136 NVDLFKL 142
+ +L
Sbjct: 265 LKKIAEL 271
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (113), Expect = 5e-07
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 13/86 (15%)
Query: 18 KDMARDVIESLLTAKAK--------NTILHINIISSERENVSTKFVEEILEKCPALLLQV 69
+ LL A T L + E V+ +LE+ +
Sbjct: 195 DSDVEAITHLLLDHGADVNVRGERGKTPLILA-----VEKKHLGLVQRLLEQEHIEINDT 249
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIER 95
++ G T L LA + I +L +R
Sbjct: 250 DSDGKTALLLAVELKLKKIAELLCKR 275
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (136), Expect = 2e-10
Identities = 40/233 (17%), Positives = 69/233 (29%), Gaps = 31/233 (13%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAV 132
GDTPLH+A G+ V L+ Q G E + + NN + T LH AV
Sbjct: 3 GDTPLHIAVVQGNLPAVHRLVNL--FQQGGRE------------LDIYNNLRQTPLHLAV 48
Query: 133 SHGNVDLFKLKKTNNLILIFRDSDE------------KTNILFKFRHLDLFRIQTNSIYA 180
+ +L T + D T + + +
Sbjct: 49 ITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 108
Query: 181 ALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240
L N + + + D + L A V+ ++
Sbjct: 109 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 168
Query: 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
+ + G + LH A + +R L+ + + + +TPL V
Sbjct: 169 NVNAQMYS-GSSALHSASGRGLLPLVRTLVRSG----ADSSLKNCHNDTPLMV 216
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 3e-05
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 20/89 (22%)
Query: 54 FVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEA 112
+ ++L + A + G + LH A+ G +VR L+ A
Sbjct: 158 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD--------------- 202
Query: 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFK 141
+ N +T L A S +D+ +
Sbjct: 203 ----SSLKNCHNDTPLMVARSRRVIDILR 227
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (82), Expect = 0.002
Identities = 36/229 (15%), Positives = 70/229 (30%), Gaps = 9/229 (3%)
Query: 35 NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
+T LHI ++ V + + ++ L N TPLHLA +VR+L+
Sbjct: 4 DTPLHIAVVQGNLPAV--HRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61
Query: 95 RAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRD 154
+ + R + A +++ L +
Sbjct: 62 AGA-SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120
Query: 155 SDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKD 214
++T L R D+ + S + L +E + + + +
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA-----QMY 175
Query: 215 RKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHV 263
+ALH A+G+G V ++ L + L A +
Sbjct: 176 SGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVI 223
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.1 bits (136), Expect = 3e-10
Identities = 36/232 (15%), Positives = 70/232 (30%), Gaps = 32/232 (13%)
Query: 74 DTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVS 133
+ PLH A F V+ L+ ++ + + LH +VS
Sbjct: 1 NYPLHQACMENEFFKVQELLHSKP-----------------SLLLQKDQDGRIPLHWSVS 43
Query: 134 HGNVDLFKL-----------KKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAAL 182
++ ++ L + L ++ +
Sbjct: 44 FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN 103
Query: 183 PKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRK-MTALHLAAGKGDARTVERIISENPK 241
+ + K+ + I++ +++ KD+ LH AA G + +E +
Sbjct: 104 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 163
Query: 242 CYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
D +GW L +A+ H L+E + D D KG V
Sbjct: 164 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEK---YGAEYDLVDNKGAKAEDV 212
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.7 bits (127), Expect = 4e-09
Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 10/224 (4%)
Query: 35 NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
N LH + + V+E+L P+LLLQ + G PLH + F +I L+
Sbjct: 1 NYPLHQACMEN-----EFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 55
Query: 95 RAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRD 154
+ + D ++ F + N E +L++ +++ + L L
Sbjct: 56 KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 115
Query: 155 SDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKD 214
+ + + + LI+ G + +
Sbjct: 116 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK----- 170
Query: 215 RKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAM 258
+ T L A +G ++ + Y+LVDN+G A+
Sbjct: 171 QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 214
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Score = 57.4 bits (137), Expect = 3e-10
Identities = 30/232 (12%), Positives = 65/232 (28%), Gaps = 15/232 (6%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERA--KLAQRG---DEELENRIEAFRQMIRMVNNEKNTA 127
T LH A + LI + G + + +
Sbjct: 33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 92
Query: 128 LHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNIL-----FKFRHLDLFRIQTNSIYAAL 182
L +A + + + + RD +L T + A
Sbjct: 93 LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 152
Query: 183 PKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRK-MTALHLAAGKGDARTVERIISENPK 241
+ ++ + ++ + + K TALH AA + V+ ++ E
Sbjct: 153 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS 212
Query: 242 CYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
+ D G + A + + L++ + ++ DA +T +
Sbjct: 213 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG----ASVEAVDATDHTARQL 260
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Score = 50.9 bits (120), Expect = 5e-08
Identities = 16/95 (16%), Positives = 39/95 (41%), Gaps = 20/95 (21%)
Query: 49 NVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELE 107
+ V+ ++ + + + + G TP+ LAA+ G ++V LI++ A
Sbjct: 197 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS---------- 246
Query: 108 NRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKL 142
+ V+ +TA A ++ + ++ +
Sbjct: 247 ---------VEAVDATDHTARQLAQANNHHNIVDI 272
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Score = 40.1 bits (92), Expect = 2e-04
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 32 KAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRV 91
+ T + + E V L + A + V+A T LA H +IV +
Sbjct: 219 EDGKTPIMLAAQEGRIEVV------MYLIQQGASVEAVDATDHTARQLAQANNHHNIVDI 272
Query: 92 LIE 94
Sbjct: 273 FDR 275
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.9 bits (133), Expect = 9e-10
Identities = 36/254 (14%), Positives = 59/254 (23%), Gaps = 56/254 (22%)
Query: 69 VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTAL 128
V GDT LHLA H + L+ A + + + N+ TAL
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGF---------------SAGHEYLDLQNDLGQTAL 49
Query: 129 HEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEK 188
H A G + + + + H L + LL+
Sbjct: 50 HLAAILGEASTVE---------KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQP 100
Query: 189 KKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK------- 241
+ + ++ T Q + A + + R +
Sbjct: 101 RPSHPRDASDTYLTQSQ---DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157
Query: 242 ----------------CYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEG-- 283
L D L + S+ L+ G
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 284 ----DAKGNTPLHV 293
G TPL
Sbjct: 218 PTARMYGGRTPLGS 231
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.5 bits (101), Expect = 1e-05
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 57 EILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIER-AKLAQRG 102
E+L K A G TPL A + + R+L A + G
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDG 255
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.7 bits (119), Expect = 5e-08
Identities = 39/224 (17%), Positives = 65/224 (29%), Gaps = 38/224 (16%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAV 132
GD+ LHLA + +I ++ + NN + T LH AV
Sbjct: 2 GDSFLHLAIIHEEKALTMEVIR--QVKGDLAF------------LNFQNNLQQTPLHLAV 47
Query: 133 SHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNL 192
++ + RD T + L +
Sbjct: 48 ITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL---------------- 91
Query: 193 IKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWN 252
Q TP + A T LHLA+ G VE ++S G
Sbjct: 92 ----TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT 147
Query: 253 FLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAA 296
LH A+ + + LL+ + ++ +G +P +
Sbjct: 148 ALHLAVDLQNPDLVSLLLKCG----ADVNRVTYQGYSPYQLTWG 187
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (91), Expect = 2e-04
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 35 NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
T LH+ + + VS KC A + +V +G +P L I + L +
Sbjct: 146 RTALHLAVDLQNPDLVSLLL------KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 199
Query: 95 R 95
Sbjct: 200 L 200
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (82), Expect = 0.002
Identities = 28/216 (12%), Positives = 62/216 (28%), Gaps = 10/216 (4%)
Query: 35 NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
++ LH+ II E+ V ++ A L N TPLHLA +I L+
Sbjct: 3 DSFLHLAIIHEEKALT--MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60
Query: 95 RAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILI--F 152
+ D + + + + T ++ + + +
Sbjct: 61 AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120
Query: 153 RDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIAD 212
+L + N A + + +L+ + G N
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-----NRVT 175
Query: 213 KDRKMTALHLAAGKGDARTVERIISENPKCYELVDN 248
+ L G+ R +++ + +++
Sbjct: 176 YQ-GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE 210
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Score = 51.4 bits (122), Expect = 5e-08
Identities = 32/266 (12%), Positives = 68/266 (25%), Gaps = 40/266 (15%)
Query: 35 NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
I + ++ S +L ++ + A+ LAA+ GH ++ L E
Sbjct: 91 EVICFV---AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 147
Query: 95 RAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRD 154
E + M+ E A A +G++ + L
Sbjct: 148 -----LAPTEI-----------MAMIQAENYHAFRLAAENGHLHVLNR-------LCELA 184
Query: 155 SDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQST------S 208
E T ++ + + + L ++ + + + +
Sbjct: 185 PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR 244
Query: 209 NIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRN 268
++ A L+ G V + L L + +R
Sbjct: 245 HVNRLKEMHDAFKLSNPDGVFDLVTKSEC-------LQGFYMLRNLIRRNDEVLLDDIRF 297
Query: 269 LLENNSLARSL-IDEGDAKGNTPLHV 293
LL + N L +
Sbjct: 298 LLSIPGIKALAPTATIPGDANELLRL 323
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 10/75 (13%), Positives = 16/75 (21%), Gaps = 13/75 (17%)
Query: 68 QVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTA 127
L D +R L+ + + + N
Sbjct: 274 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP-------------TATIPGDANEL 320
Query: 128 LHEAVSHGNVDLFKL 142
L A+ GN L
Sbjct: 321 LRLALRLGNQGACAL 335
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Score = 39.9 bits (92), Expect = 2e-04
Identities = 43/259 (16%), Positives = 72/259 (27%), Gaps = 42/259 (16%)
Query: 6 FKAASAGNSEPFKDMARDVIESLLTAKAK--------NTILHINIISSERENVSTKFVEE 57
F AA G S A D + LLT+ + EN +
Sbjct: 95 FVAAITGCSS-----ALDTLCLLLTSDEIVKVIQAENYQAFRLAA-----ENGHLHVLNR 144
Query: 58 ILEKCPALLLQ-VNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQM 116
+ E P ++ + A+ LAA+ GH ++ L E A + EN
Sbjct: 145 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA 204
Query: 117 IRM-----------VNNEKNTALHEAVSHGNVDLFKL-------KKTNNLILIFRDSDEK 158
+ A +G + K + + D
Sbjct: 205 VGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGV 264
Query: 159 TNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMT 218
+++ K L F + N I LL+ + L+ P +
Sbjct: 265 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG-----DANE 319
Query: 219 ALHLAAGKGDARTVERIIS 237
L LA G+ ++S
Sbjct: 320 LLRLALRLGNQGACALLLS 338
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Score = 37.9 bits (87), Expect = 0.001
Identities = 24/234 (10%), Positives = 50/234 (21%), Gaps = 67/234 (28%)
Query: 40 INIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLA 99
+ +I + + L+ ++ K + L + ++L
Sbjct: 16 LRLIPWILWE---NLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHY 72
Query: 100 QRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKT 159
R ++L + + A G
Sbjct: 73 NRNAKQLWSDAHK-------KGIKSEVICFVAAITGCSSALDTL---------------- 109
Query: 160 NILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTA 219
LL ++K + A
Sbjct: 110 ------------------------CLLLTSDEIVKVIQAENY----------------QA 129
Query: 220 LHLAAGKGDARTVERIISENPKC-YELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272
LAA G + R+ P ++ ++ A + H+ L L E
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCEL 183
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 5e-08
Identities = 46/214 (21%), Positives = 74/214 (34%), Gaps = 33/214 (15%)
Query: 98 LAQRGD-EELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSD 156
LA G EEL+ I A + + + + TALH A S G+ ++ F
Sbjct: 10 LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIV----------EFLLQL 59
Query: 157 EKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTP------------- 203
I ++ + K L K + +Q G TP
Sbjct: 60 GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIA 119
Query: 204 ---IQSTSNIADKDRK-MTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMV 259
++ +N KD TA+H AA KG+ + + ++ D G LH A
Sbjct: 120 VMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI-QDTEGNTPLHLACD 178
Query: 260 SFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHV 293
V + + L+ + I + + TPL V
Sbjct: 179 EERVEEAKLLVSQGAS----IYIENKEEKTPLQV 208
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (107), Expect = 2e-06
Identities = 39/215 (18%), Positives = 66/215 (30%), Gaps = 45/215 (20%)
Query: 55 VEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFR 114
++E + +L + + T LH A GH +IV L++ D+ + +
Sbjct: 19 LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 78
Query: 115 Q---------------MIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKT 159
+ VN T LH A S ++ + +D E T
Sbjct: 79 SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEAT 138
Query: 160 NILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTS----------- 208
+ +L I L K D G TP+
Sbjct: 139 AMHRAAAKGNLKMIHI----------LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 188
Query: 209 -------NIADKDRKMTALHLAAGKGDARTVERII 236
I +K+ K T L +A G G ++R++
Sbjct: 189 VSQGASIYIENKEEK-TPLQVAKG-GLGLILKRMV 221
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (82), Expect = 0.003
Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 181 ALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240
L + + K+L TDQ T LH A G VE ++
Sbjct: 18 ELKESILADKSLATRTDQDSRTA----------------LHWACSAGHTEIVEFLLQLGV 61
Query: 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPK 300
+ D+ GW+ LH A + ++ LL + ++ + G TPLH A+
Sbjct: 62 PVND-KDDAGWSPLHIAASAGRDEIVKALLGKGAQ----VNAVNQNGCTPLHYAASKNRH 116
Query: 301 E 301
E
Sbjct: 117 E 117
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.7 bits (81), Expect = 0.004
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 57 EILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
++L A + N + TPL +A G I++ ++E
Sbjct: 186 KLLVSQGASIYIENKEEKTPLQVAKG-GLGLILKRMVE 222
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 48.9 bits (115), Expect = 2e-07
Identities = 43/242 (17%), Positives = 74/242 (30%), Gaps = 21/242 (8%)
Query: 68 QVNAKGDTPLHLAAKFGHFDIVRVLIER---------------AKLAQRGDEELENRIEA 112
+V A G + V L+ER + + ++ +
Sbjct: 35 KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE 94
Query: 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFR 172
I +NE LH A S G +D+ + + + +S+ T +
Sbjct: 95 NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEEL 154
Query: 173 IQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRK-MTALHLAAGKGDART 231
+Q + +K+ N + TALH+AA KG
Sbjct: 155 LQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV 214
Query: 232 VERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPL 291
++ +I + D GW LH A R L+EN ++ + G T
Sbjct: 215 LKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENL----CDMEAVNKVGQTAF 269
Query: 292 HV 293
V
Sbjct: 270 DV 271
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 45.1 bits (105), Expect = 4e-06
Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 24/120 (20%)
Query: 30 TAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIV 89
AK+ T LH+ E + ++L + + + G TPLH AA +G +
Sbjct: 195 HAKSGGTALHVAAAKGYTEVL------KLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC 248
Query: 90 RVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLI 149
R+L+E D + VN TA A L +L+K NL+
Sbjct: 249 RILVEN-----LCD-------------MEAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 45.9 bits (107), Expect = 1e-06
Identities = 38/243 (15%), Positives = 75/243 (30%), Gaps = 48/243 (19%)
Query: 51 STKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRI 110
+ + + ++L + L ++ G+T LHLAA+F D + L++
Sbjct: 1 TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLD---------------- 44
Query: 111 EAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDL 170
+N T LH AV+ + +F++ N + + T L L +
Sbjct: 45 --AGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAI 102
Query: 171 FRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDAR 230
+ + L I D G T + + + + + L
Sbjct: 103 EGMV---------EDLITADADINAADNSGKTALHWAAAVNNTEAVNILLM--------- 144
Query: 231 TVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTP 290
+ + D++ L A + LL+N + + D P
Sbjct: 145 --------HHANRDAQDDKDETPLFLAAREGSYEASKALLDNF----ANREITDHMDRLP 192
Query: 291 LHV 293
V
Sbjct: 193 RDV 195
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 39.0 bits (89), Expect = 3e-04
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 57 EILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVL 92
+ L A + P +A++ H DIVR+L
Sbjct: 173 KALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208
|
| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: p18ink4C(ink6) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (98), Expect = 9e-06
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 68 QVNAKGDTPLHLAAKFGHFDIVRVLIER 95
N KGDT LA +G ++V ++
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQAN 155
|
| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: p18ink4C(ink6) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (90), Expect = 1e-04
Identities = 13/164 (7%), Positives = 31/164 (18%), Gaps = 13/164 (7%)
Query: 75 TPLHLAAKFGHFDIVRVLIER-AKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVS 133
L AA G + + L++ + + + + +
Sbjct: 3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62
Query: 134 HGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLI 193
L + + + +
Sbjct: 63 DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG-----------H 111
Query: 194 KETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS 237
++ S + TA LA G V + +
Sbjct: 112 LRVVEFLVKHTASNVGHRNHK-GDTACDLARLYGRNEVVSLMQA 154
|
| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p19ink4D species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 5e-05
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 62 CPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIE 94
+ L + +A+G TPL LA + G D+V +L
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
|
| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p19ink4D species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.001
Identities = 23/170 (13%), Positives = 45/170 (26%), Gaps = 20/170 (11%)
Query: 72 KGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEA 131
+ L AA G VR L+ R + + N K
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHR----ELVHPDALN------------RFGKTALQVMM 44
Query: 132 VSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKN 191
+ L LK+ + + + + LD ++
Sbjct: 45 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104
Query: 192 LIKETDQYGWTPIQSTSNIADKDRK----MTALHLAAGKGDARTVERIIS 237
+ + + + +D R+ +T L LA +G V+ +
Sbjct: 105 IHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: GA bindinig protein (GABP) beta 1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.2 bits (92), Expect = 6e-05
Identities = 22/159 (13%), Positives = 45/159 (28%), Gaps = 12/159 (7%)
Query: 75 TPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSH 134
L AA+ G D VR+L+ G + + + +T +
Sbjct: 4 KKLLEAARAGQDDEVRILMA------NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57
Query: 135 GNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIK 194
+ D L + + + D+ + A + +++
Sbjct: 58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117
Query: 195 ETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVE 233
+YG + K K TA ++ G+ E
Sbjct: 118 LLIKYGADV-----HTQSKFCK-TAFDISIDNGNEDLAE 150
|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: GA bindinig protein (GABP) beta 1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.1 bits (89), Expect = 2e-04
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 53 KFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVL 92
+ V E+L K A + + T ++ G+ D+ +L
Sbjct: 113 QEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
|
| >d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p16ink4A species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (88), Expect = 2e-04
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIERA 96
G P+ LA + GH D+ R L A
Sbjct: 102 GRLPVDLAEELGHRDVARYLRAAA 125
|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Pyk2-associated protein beta species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.3 bits (85), Expect = 8e-04
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 70 NAKGDTPLHLAAKFGHFDIVRVLIE 94
N G+TPL +A + H +L +
Sbjct: 111 NESGETPLDIAKRLKHEHCEELLTQ 135
|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Pyk2-associated protein beta species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.1 bits (82), Expect = 0.002
Identities = 19/129 (14%), Positives = 37/129 (28%), Gaps = 18/129 (13%)
Query: 32 KAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKF---GHFDI 88
AK L + + + + + + + L + +T LHLA + I
Sbjct: 4 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 63
Query: 89 VRVLIE---------------RAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVS 133
V L++ + E + + I + N T L A
Sbjct: 64 VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 123
Query: 134 HGNVDLFKL 142
+ +L
Sbjct: 124 LKHEHCEEL 132
|
| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myotrophin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.4 bits (82), Expect = 9e-04
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 73 GDTPLHLAAKFGHFDIVRVLIER 95
D A K G D V+ + +
Sbjct: 2 CDKEFMWALKNGDLDEVKDYVAK 24
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 303 | |||
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1uoha_ | 223 | 26S proteasome non-ATPase regulatory subunit 10, g | 100.0 | |
| d1oy3d_ | 255 | Transcription factor inhibitor I-kappa-B-beta, IKB | 100.0 | |
| d2fo1e1 | 277 | Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | 100.0 | |
| d1s70b_ | 291 | Myosin phosphatase targeting subunit 1, MYPT1 {Chi | 100.0 | |
| d1oy3d_ | 255 | Transcription factor inhibitor I-kappa-B-beta, IKB | 100.0 | |
| d1ixva_ | 229 | 26S proteasome non-ATPase regulatory subunit 10, g | 100.0 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1iknd_ | 221 | I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 | 100.0 | |
| d1k1aa_ | 228 | bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1uoha_ | 223 | 26S proteasome non-ATPase regulatory subunit 10, g | 100.0 | |
| d1wdya_ | 285 | RNase L, 2-5a-dependent ribonuclease {Human (Homo | 100.0 | |
| d2fo1e1 | 277 | Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | 99.98 | |
| d1iknd_ | 221 | I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 | 99.97 | |
| d1ot8a_ | 209 | Neurogenic locus notch receptor domain {Fruit fly | 99.97 | |
| d1ixva_ | 229 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.97 | |
| d1wdya_ | 285 | RNase L, 2-5a-dependent ribonuclease {Human (Homo | 99.97 | |
| d2ajaa1 | 346 | Hypothetical protein LPG2416 {Legionella pneumophi | 99.96 | |
| d1k1aa_ | 228 | bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1ihba_ | 156 | p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] | 99.95 | |
| d2ajaa1 | 346 | Hypothetical protein LPG2416 {Legionella pneumophi | 99.95 | |
| d1s70b_ | 291 | Myosin phosphatase targeting subunit 1, MYPT1 {Chi | 99.95 | |
| d1ihba_ | 156 | p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] | 99.95 | |
| d1awcb_ | 153 | GA bindinig protein (GABP) beta 1 {Mouse (Mus musc | 99.94 | |
| d1ot8a_ | 209 | Neurogenic locus notch receptor domain {Fruit fly | 99.94 | |
| d1bd8a_ | 156 | Cell cycle inhibitor p19ink4D {Human (Homo sapiens | 99.94 | |
| d1bd8a_ | 156 | Cell cycle inhibitor p19ink4D {Human (Homo sapiens | 99.94 | |
| d1awcb_ | 153 | GA bindinig protein (GABP) beta 1 {Mouse (Mus musc | 99.94 | |
| d1sw6a_ | 301 | Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch | 99.94 | |
| d1myoa_ | 118 | Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] | 99.93 | |
| d1bi7b_ | 125 | Cell cycle inhibitor p16ink4A {Human (Homo sapiens | 99.93 | |
| d1bi7b_ | 125 | Cell cycle inhibitor p16ink4A {Human (Homo sapiens | 99.92 | |
| d1ycsb1 | 130 | 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1sw6a_ | 301 | Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch | 99.91 | |
| d1myoa_ | 118 | Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] | 99.91 | |
| d1dcqa1 | 154 | Pyk2-associated protein beta {Mouse (Mus musculus) | 99.9 | |
| d1ycsb1 | 130 | 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1dcqa1 | 154 | Pyk2-associated protein beta {Mouse (Mus musculus) | 99.85 |
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-43 Score=296.49 Aligned_cols=288 Identities=20% Similarity=0.213 Sum_probs=234.8
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~ 82 (303)
||||.||..|+.++|++|+++|++++..+..|.||||+| +..|+.+++++|++ .|++++.++..|.||||+|+.
T Consensus 2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A--~~~g~~~iv~~Ll~----~gadi~~~~~~g~t~L~~A~~ 75 (408)
T d1n11a_ 2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAAR 75 (408)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHHH
T ss_pred ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHH----CcCCCCCCCCCCCCHHHHHHH
Confidence 899999999999999999999988887888899999999 99999999999999 699999999999999999999
Q ss_pred hCCHHHHHHHHHHhHHhhc------------------------------------------------CchHHHHHHHHhh
Q 043678 83 FGHFDIVRVLIERAKLAQR------------------------------------------------GDEELENRIEAFR 114 (303)
Q Consensus 83 ~~~~~~v~~Ll~~~~~~~~------------------------------------------------~~~~~~~~~~~~~ 114 (303)
.|+.+++++|+..+.+... .+.++.+.+....
T Consensus 76 ~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~ 155 (408)
T d1n11a_ 76 IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 155 (408)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcC
Confidence 9999999999987543211 1112334444555
Q ss_pred hhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHH---------------------h
Q 043678 115 QMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFR---------------------I 173 (303)
Q Consensus 115 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~ 173 (303)
..++..+..|.+||++|+..++.+++++|+..|++++..+..+.++++.......... .
T Consensus 156 ~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l 235 (408)
T d1n11a_ 156 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL 235 (408)
T ss_dssp CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred CCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHH
Confidence 6677888899999999999999999999999999998888888888766553222111 1
Q ss_pred ---hhhhHHHHHHHHHHhccchhchhhhcCCCccccccc-----------------ccccCCcccHHhHHHhcCCHHHHH
Q 043678 174 ---QTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSN-----------------IADKDRKMTALHLAAGKGDARTVE 233 (303)
Q Consensus 174 ---~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~-----------------~~~~~~~~t~L~~a~~~~~~~~v~ 233 (303)
......+++++++..... .+..+..|.||++.++. ......+.||||.++..++.++++
T Consensus 236 ~~a~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~ 314 (408)
T d1n11a_ 236 HLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK 314 (408)
T ss_dssp HHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHH
T ss_pred HHHHHhCcHhHhhhhhccccc-cccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeee
Confidence 111125566666665544 66677788888875541 112246789999999999999999
Q ss_pred HHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 234 RIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 234 ~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
++++.|++ ++.+|..|.||||+|++.|+.+++++|++ .|++++.+|.+|+||||+|++.|+.++
T Consensus 315 ~ll~~g~~-in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~----~GAd~n~~d~~G~t~L~~A~~~~~~~i 378 (408)
T d1n11a_ 315 FLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLK----NGASPNEVSSDGTTPLAIAKRLGYISV 378 (408)
T ss_dssp HHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCSSSCCHHHHHHHTTCHHH
T ss_pred eecccccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 99999998 58999999999999999999999999988 588899999999999999999998653
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.4e-39 Score=244.76 Aligned_cols=210 Identities=23% Similarity=0.235 Sum_probs=180.2
Q ss_pred ChhHHHHHhcCCChhHHHHHHH-HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARD-VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
++.|+.++..|+.+.|+.++.. +.....+|..|+||||+| +..|+.+++++++. .+......+..+.++++++
T Consensus 4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~A--a~~g~~e~~~~l~~----~~~~~~~~~~~~~~~~~~~ 77 (223)
T d1uoha_ 4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWA--CSAGHTEIVEFLLQ----LGVPVNDKDDAGWSPLHIA 77 (223)
T ss_dssp SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH--HHHTCHHHHHHHHH----HTCCSCCCCTTCCCHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHH--HHhhhhcccccccc----ccccccccccccccccccc
Confidence 4678899999999999998877 445557788899999999 99999999999998 5667777788899999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccch
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTN 160 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~ 160 (303)
+..++.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.|++++
T Consensus 78 ~~~~~~~i~~~Ll~~~~d~------------------~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~--------- 130 (223)
T d1uoha_ 78 ASAGRDEIVKALLGKGAQV------------------NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--------- 130 (223)
T ss_dssp HHHTCHHHHHHHHHTTCCT------------------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT---------
T ss_pred ccccccchhHHHhccCcee------------------EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCC---------
Confidence 9999999999999998764 4889999999999999999999999888777532
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCC
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENP 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~ 240 (303)
..+. .+.||||+|+..++.+++++|++.+.
T Consensus 131 ----------------------------------~~~~----------------~~~t~L~~a~~~~~~~~~~~L~~~~~ 160 (223)
T d1uoha_ 131 ----------------------------------AKDH----------------YEATAMHRAAAKGNLKMIHILLYYKA 160 (223)
T ss_dssp ----------------------------------CCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ----------------------------------CcCC----------------CCCccchhhhhcCCcchhhhhccccc
Confidence 2222 34567999999999999999999999
Q ss_pred cccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCC
Q 043678 241 KCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPK 300 (303)
Q Consensus 241 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~ 300 (303)
+ ++..|..|+||||+|++.|+.+++++|++ .|++++.+|.+|+||||+|+ .|+.
T Consensus 161 ~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~----~Gad~~~~d~~g~tpl~~A~-~~~~ 214 (223)
T d1uoha_ 161 S-TNIQDTEGNTPLHLACDEERVEEAKLLVS----QGASIYIENKEEKTPLQVAK-GGLG 214 (223)
T ss_dssp C-SCCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHCC-TTHH
T ss_pred e-eeeccCCCCceeccccccCcHHHHHHHHH----CCCCCCCCCCCCCCHHHHHH-CCCH
Confidence 8 58899999999999999999888888887 57889999999999999884 4543
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.6e-39 Score=250.38 Aligned_cols=231 Identities=19% Similarity=0.071 Sum_probs=164.5
Q ss_pred cccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHH
Q 043678 31 AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRI 110 (303)
Q Consensus 31 ~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~ 110 (303)
+.+|.||||+| +++|+.+++++|++. ......++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 6 ~~~G~t~Lh~A--~~~~~~~~v~~Ll~~-~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~---------- 72 (255)
T d1oy3d_ 6 TEDGDTALHLA--VIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL---------- 72 (255)
T ss_dssp CTTCCCHHHHH--HHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS----------
T ss_pred CcCCCCHHHHH--HHcCCHHHHHHHHHc-CCCcccccCcCCCCCCccchHHhhccccccccccccccccc----------
Confidence 34599999999 999999999999983 11233477888999999999999999999999999998754
Q ss_pred HHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhcc-chhHHhhhhhH---HHHHHHHH
Q 043678 111 EAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRH-LDLFRIQTNSI---YAALPKLL 186 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~ll 186 (303)
..|..|.||||+|+..++.+++++|++.+.................... ........... ......+.
T Consensus 73 --------~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (255)
T d1oy3d_ 73 --------VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144 (255)
T ss_dssp --------CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------C
T ss_pred --------ccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHh
Confidence 8899999999999999999999998766543221111110000000000 00000000000 00000000
Q ss_pred HhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhh
Q 043678 187 EKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQL 266 (303)
Q Consensus 187 ~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~ 266 (303)
......++. ....|.||||+|+..++.+++++|++++++.....+..|.||||+|++.++.+++
T Consensus 145 ~~~~~~in~----------------~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v 208 (255)
T d1oy3d_ 145 EDWRLQLEA----------------ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208 (255)
T ss_dssp CCGGGGTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred hhcCccccc----------------ccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHH
Confidence 001111111 2246778899999999999999999999997666778999999999999999999
Q ss_pred HHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 267 RNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 267 ~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
++|++ +|++++.+|..|+||||+|++.++.++
T Consensus 209 ~~Ll~----~gadin~~d~~g~t~L~~A~~~~~~~i 240 (255)
T d1oy3d_ 209 ELLLK----AGADPTARMYGGRTPLGSALLRPNPIL 240 (255)
T ss_dssp HHHHH----TTCCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred HHHHH----CCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence 98887 588899999999999999999998764
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=4.7e-39 Score=254.59 Aligned_cols=261 Identities=16% Similarity=0.157 Sum_probs=192.6
Q ss_pred ChhHHHHHhc-CCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHH----HHhCchhhhccccCCCcH
Q 043678 2 DLNFFKAASA-GNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEI----LEKCPALLLQVNAKGDTP 76 (303)
Q Consensus 2 ~~~L~~A~~~-g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~----~~~~~~~~~~~~~~g~tp 76 (303)
+|||+.+++. |+.++++.|.+.+++. .+...|.||||+| +..|+.+++++|+.. +...|+++|.+|.+|.||
T Consensus 1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~-~~~~~g~T~Lh~A--~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~Tp 77 (277)
T d2fo1e1 1 ESPIKLHTEAAGSYAITEPITRESVNI-IDPRHNRTVLHWI--ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP 77 (277)
T ss_dssp CCCCHHHHHHHSSSCCCSCCSTTTTTT-CCCSSCCCHHHHH--HCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCH
T ss_pred CChHHHHHHhCCCHHHHHHHHhcCCCc-CCCCCCccHHHHH--HHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCee
Confidence 6899965554 6667777777778875 3333499999999 999999999998754 234789999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCc---ceeee
Q 043678 77 LHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNL---ILIFR 153 (303)
Q Consensus 77 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~---~~~~~ 153 (303)
||+|+..|+.++|++|+++|++++ .++..|.||+++|+..++.+++.++...+. .+...
T Consensus 78 Lh~A~~~g~~~iv~~Ll~~Gad~n------------------~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~ 139 (277)
T d2fo1e1 78 LMLAVLARRRRLVAYLMKAGADPT------------------IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL 139 (277)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSC------------------CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC
T ss_pred eccccccccccccccccccccccc------------------cccccccccccchhhhcchhhhhhhhhccccccccccc
Confidence 999999999999999999998754 788999999999999999999998765432 23333
Q ss_pred cccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHH
Q 043678 154 DSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVE 233 (303)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~ 233 (303)
+....++.......... .....+..+.......... ...........|.||||+++..++.++++
T Consensus 140 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~t~L~~~~~~~~~~~~~ 204 (277)
T d2fo1e1 140 DRNGMTALMIVAHNEGR------DQVASAKLLVEKGAKVDYD---------GAARKDSEKYKGRTALHYAAQVSNMPIVK 204 (277)
T ss_dssp CTTSCCHHHHHHHSCST------THHHHHHHHHHHTCCSSCC---------SGGGTSSSSCCCCCTHHHHHSSCCHHHHH
T ss_pred ccccchhHHHHHhcccc------ccccccccccccccccccc---------ccccccccccCCCCccccccccccccccc
Confidence 33343333332211111 0112222222221110000 00011122346889999999999999999
Q ss_pred HHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 234 RIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 234 ~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+++.......+.+|..|+||||+|++.|+.+++++|++ .|++++.+|.+|+||||+|++.|+.||
T Consensus 205 ~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~----~gadin~~d~~G~T~L~~A~~~~~~~i 269 (277)
T d2fo1e1 205 YLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ----QGASVEAVDATDHTARQLAQANNHHNI 269 (277)
T ss_dssp HHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSSCCCSSSCCHHHHHHHTTCHHH
T ss_pred cccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHH----CcCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence 87765544468899999999999999999999998887 578899999999999999999998765
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=100.00 E-value=1e-37 Score=248.60 Aligned_cols=232 Identities=23% Similarity=0.229 Sum_probs=181.8
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~ 82 (303)
|+|+.||..|+.++|++|+++|++++..+..|.||||+| +..|+.+++++|++ .+.+....+..+.|||++|+.
T Consensus 42 t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A--~~~g~~eiv~~Ll~----~~~~~~~~~~~~~~~L~~a~~ 115 (291)
T d1s70b_ 42 AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA--CIDDNVDMVKFLVE----NGANINQPDNEGWIPLHAAAS 115 (291)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHH--HhcCCceeeeeecc----ccccccccccccccccccccc
Confidence 789999999999999999999988877788899999999 99999999999998 788888888889999999999
Q ss_pred hCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhh-CCcceeeecccccchh
Q 043678 83 FGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKT-NNLILIFRDSDEKTNI 161 (303)
Q Consensus 83 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~-~~~~~~~~~~~~~~~~ 161 (303)
.++.++++.|+++|+... ..+..+.+|+++|+..+..+.++.++. .+.............
T Consensus 116 ~~~~~~~~~l~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~- 176 (291)
T d1s70b_ 116 CGYLDIAEYLISQGAHVG------------------AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI- 176 (291)
T ss_dssp HTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH-
T ss_pred ccccchhhcccccCcccc------------------cccccCccccccccccccchhcccccccccccccccccccccc-
Confidence 999999999999886643 678889999999999999888888553 232211111110000
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
........+......... ....|.||||.|+..|+.+++++|++.|++
T Consensus 177 ----------------~~~~~~~~~~~~~~~~~~----------------~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d 224 (291)
T d1s70b_ 177 ----------------MLRDARQWLNSGHINDVR----------------HAKSGGTALHVAAAKGYTEVLKLLIQARYD 224 (291)
T ss_dssp ----------------HHHHHHHHHHHTCCCCCC----------------CTTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred ----------------ccccchhhhccccccccc----------------ccCCCCChhhHHHHcCChhhhcccccceec
Confidence 001111111111111111 123567889999999999999999999999
Q ss_pred ccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHh
Q 043678 242 CYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAA 296 (303)
Q Consensus 242 ~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~ 296 (303)
++.++..|+||||+|++.|+.+++++|++ .|++++.+|..|+||||+|++
T Consensus 225 -in~~~~~g~TpL~~A~~~g~~~iv~lLl~----~Gadv~~~d~~G~TaL~~A~e 274 (291)
T d1s70b_ 225 -VNIKDYDGWTPLHAAAHWGKEEACRILVE----NLCDMEAVNKVGQTAFDVADE 274 (291)
T ss_dssp -TTCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCTTTSCCS
T ss_pred -ccccccCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHH
Confidence 58999999999999999999999988887 588899999999999999976
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.6e-37 Score=239.31 Aligned_cols=207 Identities=21% Similarity=0.168 Sum_probs=166.3
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhh---hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESL---LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLH 78 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~---~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~ 78 (303)
.||||.||..|+.+++++|++.|++.. ..+..|.||||+| +..|+.+++++|++ .|++++.+|.+|.||||
T Consensus 10 ~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A--~~~g~~~iv~~Ll~----~ga~i~~~d~~g~tpL~ 83 (255)
T d1oy3d_ 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA--AILGEASTVEKLYA----AGAGVLVAERGGHTALH 83 (255)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHH--HHHTCHHHHHHHHH----TTCCSSCCCTTSCCHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchH--Hhhccccccccccc----ccccccccccccchhhh
Confidence 589999999999999999999987633 4566799999999 99999999999998 79999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHhHHhhcCchH-----------------------------HHHHHHHhhhhhccccCCCccHHH
Q 043678 79 LAAKFGHFDIVRVLIERAKLAQRGDEE-----------------------------LENRIEAFRQMIRMVNNEKNTALH 129 (303)
Q Consensus 79 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~t~l~ 129 (303)
+|+..++.+++++|++.+......... ...........++.++..|.||||
T Consensus 84 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh 163 (255)
T d1oy3d_ 84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163 (255)
T ss_dssp HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred hhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccc
Confidence 999999999999998764321110000 000001123456778889999999
Q ss_pred HHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCccccccc
Q 043678 130 EAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSN 209 (303)
Q Consensus 130 ~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~ 209 (303)
+|+..++.+++++|++.+.+ .....+.
T Consensus 164 ~A~~~~~~~~v~~Ll~~~~~------------------------------------------~~~~~~~----------- 190 (255)
T d1oy3d_ 164 VAVIHKDAEMVRLLRDAGAD------------------------------------------LNKPEPT----------- 190 (255)
T ss_dssp HHHHTTCHHHHHHHHHHTCC------------------------------------------TTCCCTT-----------
T ss_pred ccccccccccccchhccccc------------------------------------------ccccccc-----------
Confidence 99999998888887665543 1122222
Q ss_pred ccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcc
Q 043678 210 IADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273 (303)
Q Consensus 210 ~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~ 273 (303)
.|.||||+|++.|+.+++++|+++|++ ++.+|..|.||||+|++.++.+++++|++.+
T Consensus 191 -----~g~TpL~~A~~~~~~~~v~~Ll~~gad-in~~d~~g~t~L~~A~~~~~~~i~~~Ll~~G 248 (255)
T d1oy3d_ 191 -----CGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHG 248 (255)
T ss_dssp -----TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred -----cccccccccccccHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 456779999999999999999999999 5899999999999999999999999998854
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-36 Score=234.37 Aligned_cols=212 Identities=20% Similarity=0.223 Sum_probs=156.2
Q ss_pred ChhHHHHHhcCCChhHHHHHHH-HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhh---ccccCCCcHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARD-VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLL---QVNAKGDTPL 77 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~---~~~~~g~tpL 77 (303)
.+|||.||..|+.+.|+.|++. +......+.+|.||||+| +..|+.+++++|++ .|++++ ..+..|.||+
T Consensus 1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A--~~~g~~~iv~~Ll~----~ga~~~~~~~~~~~~~~~~ 74 (229)
T d1ixva_ 1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS--VSFQAHEITSFLLS----KMENVNLDDYPDDSGWTPF 74 (229)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHH--HHTTCHHHHHHHHT----TCTTCCGGGCCCTTSCCHH
T ss_pred CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHH--HHcCCccccchhhh----hhccccccccccccccccc
Confidence 3677777777777777777765 333445566677777777 77777777777776 555543 3455677777
Q ss_pred HHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccc
Q 043678 78 HLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDE 157 (303)
Q Consensus 78 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~ 157 (303)
|+++..+..++++.++..+.... ....+..+.+|++.++..++.+++++|+..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-------- 130 (229)
T d1ixva_ 75 HIACSVGNLEVVKSLYDRPLKPD----------------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-------- 130 (229)
T ss_dssp HHHHHHTCHHHHHHHHSSSSCCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--------
T ss_pred ccccccccccccccccccccccc----------------ccccccccccccccccccchhhhhhhhhhhccc--------
Confidence 77777777777777776654432 334556677777777777777776665555443
Q ss_pred cchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhh
Q 043678 158 KTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS 237 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~ 237 (303)
....+. .|.||||+|+..|+.+++++|++
T Consensus 131 -----------------------------------~~~~~~----------------~g~t~l~~a~~~~~~~~~~~Ll~ 159 (229)
T d1ixva_ 131 -----------------------------------VRIKDK----------------FNQIPLHRAASVGSLKLIELLCG 159 (229)
T ss_dssp -----------------------------------SCCCCT----------------TSCCHHHHHHHHTCHHHHHHHHT
T ss_pred -----------------------------------ccccCC----------------CCCCccchhhhcccccccccccc
Confidence 222233 45577999999999999999999
Q ss_pred cCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhc
Q 043678 238 ENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAV 297 (303)
Q Consensus 238 ~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~ 297 (303)
.+...++.+|..|+||||+|+.+|+.+++++|++. .|++++.+|.+|+||||+|+..
T Consensus 160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~---~gad~~~~d~~g~t~l~~A~~~ 216 (229)
T d1ixva_ 160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK---YGAEYDLVDNKGAKAEDVALNE 216 (229)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHH---HCCCSCCCCTTSCCTGGGCSCH
T ss_pred cccccccccccccCCchhhhcccccHHHHHHHHHh---cCCCCCCcCCCCCCHHHHHhhH
Confidence 98766789999999999999999999999988864 5889999999999999999754
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-35 Score=247.94 Aligned_cols=270 Identities=20% Similarity=0.199 Sum_probs=198.2
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHH-----------------------
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEI----------------------- 58 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~----------------------- 58 (303)
.||||.|+..|+.+++++|+++|++....+..|.||||+| +..|+.+++++|+..
T Consensus 34 ~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A--~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (408)
T d1n11a_ 34 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCA--ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGH 111 (408)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHH--HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcc
Confidence 5899999999999999999999998888888899999999 999988888877641
Q ss_pred ---------------------------------------HHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHh
Q 043678 59 ---------------------------------------LEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLA 99 (303)
Q Consensus 59 ---------------------------------------~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~ 99 (303)
+...+.+++..+..|.+|||+|+..|+.+++++|+++|+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~ 191 (408)
T d1n11a_ 112 VETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 191 (408)
T ss_dssp HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS
T ss_pred cccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcc
Confidence 22244555666666777777777777777777777776654
Q ss_pred hcCch---------------HHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhh
Q 043678 100 QRGDE---------------ELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFK 164 (303)
Q Consensus 100 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~ 164 (303)
+..+. +....+..........+..+.|||++|+..+..++++++...+......+..+.++++.+
T Consensus 192 ~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a 271 (408)
T d1n11a_ 192 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV 271 (408)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred cccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhh
Confidence 42221 122222222333344566677777777777777777777766666666666666666554
Q ss_pred hccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCccccccc----------------c-cccCCcccHHhHHHhcC
Q 043678 165 FRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSN----------------I-ADKDRKMTALHLAAGKG 227 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~----------------~-~~~~~~~t~L~~a~~~~ 227 (303)
... ...+++++|++++.+ ++..+..+.||++.+.. . ..+..|.||||.|++.|
T Consensus 272 ~~~---------~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g 341 (408)
T d1n11a_ 272 AQE---------GHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG 341 (408)
T ss_dssp HHH---------TCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred hhc---------CcHHHHHHHHHCCCc-cccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcC
Confidence 432 236888899988776 77788889999986541 1 23358999999999999
Q ss_pred CHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCC
Q 043678 228 DARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDA 285 (303)
Q Consensus 228 ~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~ 285 (303)
+.++|++|+++|++ ++.+|..|+||||+|++.|+.++++.| +.+...+.+....+.
T Consensus 342 ~~~iv~~Ll~~GAd-~n~~d~~G~t~L~~A~~~~~~~iv~~L-~~~~~~~~~~~~~~~ 397 (408)
T d1n11a_ 342 HTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVL-KVVTDETSFVLVSDK 397 (408)
T ss_dssp CHHHHHHHHHTTCC-SCCCCSSSCCHHHHHHHTTCHHHHHHH-HHHCCCCSSCC----
T ss_pred CHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHH-HHHHhcccccccccc
Confidence 99999999999999 589999999999999999999998765 666666666655554
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.4e-36 Score=229.38 Aligned_cols=93 Identities=24% Similarity=0.213 Sum_probs=49.6
Q ss_pred CCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHh
Q 043678 34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAF 113 (303)
Q Consensus 34 g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 113 (303)
|.||||+| +..|+.+++..|++.+...+.+++.+|..|+||||+|+..|+.+++++|++.|+++
T Consensus 2 G~t~Lh~A--~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-------------- 65 (221)
T d1iknd_ 2 GDSFLHLA--IIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-------------- 65 (221)
T ss_dssp CCCTTHHH--HHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS--------------
T ss_pred CChHHHHH--HHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccc--------------
Confidence 55666666 55555544444444333355555555666666666666666666666666555543
Q ss_pred hhhhccccCCCccHHHHHHhcCcHHHHHhHhhC
Q 043678 114 RQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTN 146 (303)
Q Consensus 114 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~ 146 (303)
+..|..|.|||++++..++.++++.|+..
T Consensus 66 ----~~~d~~g~t~l~~~~~~~~~~~~~~l~~~ 94 (221)
T d1iknd_ 66 ----ELRDFRGNTPLHLACEQGCLASVGVLTQS 94 (221)
T ss_dssp ----CCCCTTCCCHHHHHHHHTCHHHHHHHHHS
T ss_pred ----cccccccccccccccccccccccchhhhh
Confidence 24555566666666666655555554443
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-34 Score=219.77 Aligned_cols=220 Identities=19% Similarity=0.152 Sum_probs=173.5
Q ss_pred cCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHH
Q 043678 33 AKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEA 112 (303)
Q Consensus 33 ~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 112 (303)
+|.||||+| +..|+.+++++|++.+...|.+++.+|..|+||||+|+..|+.+++++|+++|++.+
T Consensus 2 dG~TpLh~A--~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~------------ 67 (228)
T d1k1aa_ 2 DGDTPLHIA--VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM------------ 67 (228)
T ss_dssp TTCCHHHHH--HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred CCccHHHHH--HHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccc------------
Confidence 499999999 999999999999998888999999999999999999999999999999999988754
Q ss_pred hhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcc----eeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHh
Q 043678 113 FRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLI----LIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEK 188 (303)
Q Consensus 113 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 188 (303)
..+..+.++++.|...++.++++.+...... ..........++.... ..........+...
T Consensus 68 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~l~~~ 132 (228)
T d1k1aa_ 68 ------ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV---------NTECQETVQLLLER 132 (228)
T ss_dssp ------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHH---------HHTCHHHHHHHHHT
T ss_pred ------ccccccccccccccccccccchhhhhhcccccccccccccccccccccccc---------ccccchhhhhhhcc
Confidence 7788899999999999999988875533221 1122222222222221 11112333444443
Q ss_pred ccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHH
Q 043678 189 KKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRN 268 (303)
Q Consensus 189 ~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ 268 (303)
......... ..+.++|+.|+..+...+++.+++.|.. .+.+|..|.||||+|+.+|+.+++++
T Consensus 133 ~~~~~~~~~----------------~~~~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~ 195 (228)
T d1k1aa_ 133 GADIDAVDI----------------KSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRT 195 (228)
T ss_dssp TCCTTCCCT----------------TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHH
T ss_pred ccccccccc----------------cchhhHHHHHHHhhhhhhhhhhhhhccc-cccccccCcchHHHHHHcCCHHHHHH
Confidence 333222222 2566789999999999999999999998 58899999999999999999999888
Q ss_pred HhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 269 LLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 269 ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
|++ .|++++.+|.+|+||||+|++.|+.||
T Consensus 196 Ll~----~Gad~n~~d~~G~TpL~~A~~~~~~di 225 (228)
T d1k1aa_ 196 LVR----SGADSSLKNCHNDTPLMVARSRRVIDI 225 (228)
T ss_dssp HHH----TTCCTTCCCTTSCCTTTTCSSHHHHHH
T ss_pred HHH----CCCCCCCCCCCCCCHHHHHHhCCCccc
Confidence 887 578899999999999999999987765
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-34 Score=219.81 Aligned_cols=185 Identities=22% Similarity=0.193 Sum_probs=163.4
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||+|+..|+.++++++++.+......+..+.++++.+ +..++.+++++|++ .+.+++.+|..|.||||+|+
T Consensus 38 ~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Ll~----~~~d~~~~d~~g~tpL~~A~ 111 (223)
T d1uoha_ 38 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA--ASAGRDEIVKALLG----KGAQVNAVNQNGCTPLHYAA 111 (223)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHH
T ss_pred CCHHHHHHHhhhhccccccccccccccccccccccccccc--ccccccchhHHHhc----cCceeEeeCCCCCchhhHHH
Confidence 4899999999999999999999766555566689999999 99999999999998 78999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|...+.+
T Consensus 112 ~~~~~e~~~~Ll~~g~d~~------------------~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~------------ 161 (223)
T d1uoha_ 112 SKNRHEIAVMLLEGGANPD------------------AKDHYEATAMHRAAAKGNLKMIHILLYYKAS------------ 161 (223)
T ss_dssp HHTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------
T ss_pred HcCCHHHHHHHHHCCCCCC------------------CcCCCCCccchhhhhcCCcchhhhhccccce------------
Confidence 9999999999999998754 7889999999999999999988887766654
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
++..+.+ |.||||+|+..|+.+++++|+++|++
T Consensus 162 -------------------------------i~~~d~~----------------g~TpL~~Aa~~g~~~~v~~LL~~Gad 194 (223)
T d1uoha_ 162 -------------------------------TNIQDTE----------------GNTPLHLACDEERVEEAKLLVSQGAS 194 (223)
T ss_dssp -------------------------------SCCCCTT----------------CCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred -------------------------------eeeccCC----------------CCceeccccccCcHHHHHHHHHCCCC
Confidence 3333433 45669999999999999999999999
Q ss_pred ccccccCCCChHHHHHHHhCCchhhHHHhh
Q 043678 242 CYELVDNRGWNFLHYAMVSFHVGQLRNLLE 271 (303)
Q Consensus 242 ~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~ 271 (303)
++.+|.+|+||||+| +.|+.++++.|++
T Consensus 195 -~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~ 222 (223)
T d1uoha_ 195 -IYIENKEEKTPLQVA-KGGLGLILKRMVE 222 (223)
T ss_dssp -SCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred -CCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence 589999999999998 5799888888875
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.6e-34 Score=225.71 Aligned_cols=251 Identities=17% Similarity=0.189 Sum_probs=174.0
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhh-hcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLL-TAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A 80 (303)
+|+|+.||..|+.++|++|+++|++.+. ++..|.||||+| +..|+.+++++|++ .+......+..+.+|.++|
T Consensus 6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A--~~~~~~eiv~~L~~----~~~~~~~~~~~~~~~~~~~ 79 (285)
T d1wdya_ 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLR----HGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHH--HHcCCHHHhhhhcc----ccccccccccccchhhHHH
Confidence 4789999999999999999999988764 444699999999 99999999999998 7888888999999999999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeec------
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRD------ 154 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~------ 154 (303)
+..+..+...++++...+. ...+..+.++++.|+..++...++.+.....+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (285)
T d1wdya_ 80 AIAGSVKLLKLFLSKGADV------------------NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ 141 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCT------------------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHH
T ss_pred hhcCCccccchhhhhcccc------------------cccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhh
Confidence 9999999999999876443 2567889999999999999998888765544433322
Q ss_pred ----ccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHH
Q 043678 155 ----SDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDAR 230 (303)
Q Consensus 155 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~ 230 (303)
..+.++++++... ...+++++|+.+.+..++..+..|.++.... +..+...+..+
T Consensus 142 ~~~~~~g~t~L~~A~~~---------~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~------------~~~~~~~~~~~ 200 (285)
T d1wdya_ 142 ERLRKGGATALMDAAEK---------GHVEVLKILLDEMGADVNACDNMGRNALIHA------------LLSSDDSDVEA 200 (285)
T ss_dssp HHTTCCCCCHHHHHHHH---------TCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH------------HHCSCTTTHHH
T ss_pred hhhcccCchHHHHHHHc---------CCHHHHHHHHhccCCCcccccCCCCcccccc------------cccccchHHHH
Confidence 2234444443322 2267888999876666777777776654311 11111122233
Q ss_pred HHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCC
Q 043678 231 TVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKE 301 (303)
Q Consensus 231 ~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~ 301 (303)
++++|+++|++ ++.++..|.||||+|++.|+.+++++|++. .|++++.+|.+|.||||+|++.|+.|
T Consensus 201 i~~~Li~~ga~-~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~---~g~din~~d~~G~TpL~~A~~~~~~e 267 (285)
T d1wdya_ 201 ITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKLKK 267 (285)
T ss_dssp HHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHCCCC-CCccCCCCCCccchhhhcCcHHHHHHHHHc---CCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence 55555555555 355555555555555555555555555543 34555555555555555555555543
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.98 E-value=2.7e-32 Score=215.47 Aligned_cols=223 Identities=17% Similarity=0.119 Sum_probs=175.1
Q ss_pred ChhHHHHHhcCCChhHHHHHHH--------HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCC
Q 043678 2 DLNFFKAASAGNSEPFKDMARD--------VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKG 73 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~--------~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g 73 (303)
.||||+||..|+.++|+.|+.+ |++++..+..|.||||+| +..|+.+++++|++ .|++++.++..|
T Consensus 34 ~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A--~~~g~~~iv~~Ll~----~Gad~n~~~~~g 107 (277)
T d2fo1e1 34 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA--VLARRRRLVAYLMK----AGADPTIYNKSE 107 (277)
T ss_dssp CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHH----TTCCSCCCCTTC
T ss_pred ccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccc--cccccccccccccc----cccccccccccc
Confidence 3899999999999999998766 345566778899999999 99999999999999 799999999999
Q ss_pred CcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHh---HhhCC---
Q 043678 74 DTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKL---KKTNN--- 147 (303)
Q Consensus 74 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~---L~~~~--- 147 (303)
.|||++|+..++.+++.++...+... ..++..+..+.++.+.+...+..+.... +....
T Consensus 108 ~t~l~~a~~~~~~~~~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (277)
T d2fo1e1 108 RSALHQAAANRDFGMMVYMLNSTKLK---------------GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 172 (277)
T ss_dssp CCHHHHHHHTTCHHHHHHHTTSHHHH---------------HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCS
T ss_pred cccccchhhhcchhhhhhhhhccccc---------------ccccccccccchhHHHHHhcccccccccccccccccccc
Confidence 99999999999999999998765432 2245678889999999998887553333 22221
Q ss_pred -----cceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhH
Q 043678 148 -----LILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHL 222 (303)
Q Consensus 148 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~ 222 (303)
......+..+.++++....... .+.++.++...+...+..+..| .||||+
T Consensus 173 ~~~~~~~~~~~~~~g~t~L~~~~~~~~---------~~~~~~~l~~~~~~~~~~d~~g----------------~tpL~~ 227 (277)
T d2fo1e1 173 DYDGAARKDSEKYKGRTALHYAAQVSN---------MPIVKYLVGEKGSNKDKQDEDG----------------KTPIML 227 (277)
T ss_dssp SCCSGGGTSSSSCCCCCTHHHHHSSCC---------HHHHHHHHHHSCCCTTCCCTTC----------------CCHHHH
T ss_pred cccccccccccccCCCCcccccccccc---------ccccccccccccccccccCCCC----------------CCHHHH
Confidence 1133344455555555543322 4566666665555455555544 566999
Q ss_pred HHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhh
Q 043678 223 AAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLE 271 (303)
Q Consensus 223 a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~ 271 (303)
|++.|+.+++++|+++|++ ++.+|..|+||||+|++.|+.++++.|++
T Consensus 228 A~~~g~~~iv~~Ll~~gad-in~~d~~G~T~L~~A~~~~~~~iv~lL~~ 275 (277)
T d2fo1e1 228 AAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDR 275 (277)
T ss_dssp HHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999 58999999999999999999999998876
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.2e-33 Score=212.21 Aligned_cols=198 Identities=18% Similarity=0.149 Sum_probs=164.5
Q ss_pred ChhHHHHHhcCCChhHHHHHH----HHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHH
Q 043678 2 DLNFFKAASAGNSEPFKDMAR----DVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPL 77 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~----~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL 77 (303)
+||||+|+..|+.++++.+++ .+.+++..+..|.||||+| +..|+.+++++|++ .|.+++.++..|.|||
T Consensus 3 ~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A--~~~~~~~iv~~L~~----~g~d~~~~d~~g~t~l 76 (221)
T d1iknd_ 3 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA--VITNQPEIAEALLG----AGCDPELRDFRGNTPL 76 (221)
T ss_dssp CCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHH--HHTTCHHHHHCCCS----CCCCSCCCCTTCCCHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccc--cccccccccccccc----cccccccccccccccc
Confidence 689999999999766665554 4555667788899999999 99999999999988 8999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccc
Q 043678 78 HLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDE 157 (303)
Q Consensus 78 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~ 157 (303)
++|+..++.++++.|++.+....... ........|.||||.|+..++.++++++...+..+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~------- 137 (221)
T d1iknd_ 77 HLACEQGCLASVGVLTQSCTTPHLHS------------ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV------- 137 (221)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSC------------GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-------
T ss_pred ccccccccccccchhhhhcccccccc------------cccccccccchhhhHHhhcCChhheeeecccCccc-------
Confidence 99999999999999999876543221 13456677899999999999999888866554431
Q ss_pred cchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhh
Q 043678 158 KTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIIS 237 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~ 237 (303)
....+. .|.||||+|++.|+.+++++|++
T Consensus 138 -----------------------------------~~~~~~----------------~G~T~L~~A~~~g~~~~v~~Ll~ 166 (221)
T d1iknd_ 138 -----------------------------------NAQEPC----------------NGRTALHLAVDLQNPDLVSLLLK 166 (221)
T ss_dssp -----------------------------------TCCCTT----------------TCCCHHHHHHHTTCHHHHHHHHT
T ss_pred -----------------------------------cccccc----------------CCCCccccccccccHHHHHHHHh
Confidence 111222 35677999999999999999999
Q ss_pred cCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccch
Q 043678 238 ENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLA 276 (303)
Q Consensus 238 ~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~ 276 (303)
+|++ ++.+|..|+||||+|+.+++.++++.|++.....
T Consensus 167 ~gad-~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~ 204 (221)
T d1iknd_ 167 CGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 204 (221)
T ss_dssp TTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred cCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCcc
Confidence 9999 5999999999999999999999999999886543
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.97 E-value=7.6e-31 Score=198.46 Aligned_cols=201 Identities=18% Similarity=0.149 Sum_probs=149.3
Q ss_pred hhHHHHHHHHHHhhh-hcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHH
Q 043678 15 EPFKDMARDVIESLL-TAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLI 93 (303)
Q Consensus 15 ~~v~~ll~~~~~~~~-~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 93 (303)
|+|++|+++|++.+. .|.+|.||||+| +..|+.+++++|++ .|..++.++..+.++++.++..++........
T Consensus 3 ~~v~~Ll~~g~din~~~d~~G~t~L~~A--~~~g~~e~v~~Ll~----~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (209)
T d1ot8a_ 3 QVISDLLAQGAELNATMDKTGETSLHLA--ARFARADAAKRLLD----AGADANSQDNTGRTPLHAAVAADAMGVFQILL 76 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCCcCcCcCCCCCCHHHHH--HHcCCHHHHHHHHh----hccccccccccccccccccccccccccccccc
Confidence 677888888777654 455688888888 78888888888877 67777777777888888887777776665555
Q ss_pred HHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHh
Q 043678 94 ERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRI 173 (303)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (303)
...... .......+.++.+.+.........+.|...+.+
T Consensus 77 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~------------------------ 115 (209)
T d1ot8a_ 77 RNRATN-----------------LNARMHDGTTPLILAARLAIEGMVEDLITADAD------------------------ 115 (209)
T ss_dssp TCTTCC-----------------TTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC------------------------
T ss_pred cccccc-----------------cccccccccccccccccccchhhhhhhhhhccc------------------------
Confidence 432221 123344566677766666666655555444443
Q ss_pred hhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChH
Q 043678 174 QTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNF 253 (303)
Q Consensus 174 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tp 253 (303)
++..+. .|.|||++++..+..++++.+++.+.+ ++..|..|.||
T Consensus 116 -------------------~~~~~~----------------~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~Tp 159 (209)
T d1ot8a_ 116 -------------------INAADN----------------SGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETP 159 (209)
T ss_dssp -------------------TTCBCT----------------TSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred -------------------ccccCC----------------CCCCcchhhcccCcceeeeeecccccc-ccccccccccc
Confidence 223333 445679999999999999999999988 58899999999
Q ss_pred HHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 254 LHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 254 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
||+|+..|+.++++.|++ .|++++.+|..|+||||+|+++|+.||
T Consensus 160 L~~A~~~g~~~~v~~Ll~----~gad~n~~d~~g~Tpl~~A~~~~~~~i 204 (209)
T d1ot8a_ 160 LFLAAREGSYEASKALLD----NFANREITDHMDRLPRDVASERLHHDI 204 (209)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred cchhccccHHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence 999999999988888887 578899999999999999999998764
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.5e-30 Score=199.70 Aligned_cols=187 Identities=24% Similarity=0.236 Sum_probs=158.1
Q ss_pred CchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhh
Q 043678 35 NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFR 114 (303)
Q Consensus 35 ~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 114 (303)
.+|||+| +..|+.++++.|++. .+.+++.+|.+|+||||+|+..|+.+++++|+++|++++.
T Consensus 1 n~pLh~A--~~~g~~~~v~~Ll~~---~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~------------- 62 (229)
T d1ixva_ 1 NYPLHQA--CMENEFFKVQELLHS---KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL------------- 62 (229)
T ss_dssp CCHHHHH--HHHTCHHHHHHHHHH---CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCG-------------
T ss_pred CHhHHHH--HHcCCHHHHHHHHHc---CCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccc-------------
Confidence 4899999 999999999999873 7889999999999999999999999999999999987541
Q ss_pred hhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhc
Q 043678 115 QMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIK 194 (303)
Q Consensus 115 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 194 (303)
.+..+..|.+|+++++..+..++++.+...+..... .
T Consensus 63 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~ 99 (229)
T d1ixva_ 63 --DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-----------------------------------------N 99 (229)
T ss_dssp --GGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCT-----------------------------------------T
T ss_pred --cccccccccccccccccccccccccccccccccccc-----------------------------------------c
Confidence 235678899999999999999988886655442110 0
Q ss_pred hhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhccc
Q 043678 195 ETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNS 274 (303)
Q Consensus 195 ~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~ 274 (303)
..+ ..+.++++.++..++.+++++|+..|.. .+..|..|+||||+|+.+|+.++++.|++..
T Consensus 100 ~~~----------------~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~- 161 (229)
T d1ixva_ 100 KIT----------------NQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLG- 161 (229)
T ss_dssp CCC----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT-
T ss_pred ccc----------------cccccccccccccchhhhhhhhhhhccc-ccccCCCCCCccchhhhcccccccccccccc-
Confidence 111 1456889999999999999999999988 4789999999999999999999999988852
Q ss_pred chhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 275 LARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 275 ~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+.+++.+|..|+||||+|++.|+.++
T Consensus 162 --~~~in~~d~~g~TpLh~A~~~~~~~~ 187 (229)
T d1ixva_ 162 --KSAVNWQDKQGWTPLFHALAEGHGDA 187 (229)
T ss_dssp --CCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred --cccccccccccCCchhhhcccccHHH
Confidence 36789999999999999999998653
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.1e-30 Score=203.70 Aligned_cols=243 Identities=17% Similarity=0.139 Sum_probs=193.6
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||.|+..|+.+++++|++.+......+..+.+|.++| +..+..+...+++. ........+..+.|++++|+
T Consensus 40 ~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~a~ 113 (285)
T d1wdya_ 40 WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA--AIAGSVKLLKLFLS----KGADVNECDFYGFTAFMEAA 113 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHHTCHHHHHHHHH----TTCCTTCBCTTCCBHHHHHH
T ss_pred CCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHH--hhcCCccccchhhh----hcccccccccCCCchhHHHH
Confidence 4799999999999999999999876666666689999999 99999999988888 55666677889999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHh-hCCcceeeecccccch
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKK-TNNLILIFRDSDEKTN 160 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~-~~~~~~~~~~~~~~~~ 160 (303)
..++..++..+++...+....... .......+..|.||||+|+.+|+.+++++|+ ..|+++...+..+..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~ 185 (285)
T d1wdya_ 114 VYGKVKALKFLYKRGANVNLRRKT--------KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185 (285)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCCC--------CHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCH
T ss_pred Hhcchhhhhhhhhhcccccccccc--------hhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcc
Confidence 999999999999876554321110 0112345678999999999999999999987 4578888888877765
Q ss_pred hhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhc-C
Q 043678 161 ILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE-N 239 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~-g 239 (303)
........ .......++++|++++.+ ++..+..| .||||+|++.|+.+++++|++. |
T Consensus 186 ~~~~~~~~-----~~~~~~~i~~~Li~~ga~-~n~~~~~g----------------~t~L~~a~~~~~~~~v~~lL~~~g 243 (285)
T d1wdya_ 186 LIHALLSS-----DDSDVEAITHLLLDHGAD-VNVRGERG----------------KTPLILAVEKKHLGLVQRLLEQEH 243 (285)
T ss_dssp HHHHHHCS-----CTTTHHHHHHHHHHTTCC-SSCCCTTS----------------CCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred cccccccc-----cchHHHHHHHHHHHCCCC-CCccCCCC----------------CCccchhhhcCcHHHHHHHHHcCC
Confidence 54433211 111225688889988776 55555545 5669999999999999999985 6
Q ss_pred CcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCC
Q 043678 240 PKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDA 285 (303)
Q Consensus 240 ~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~ 285 (303)
++ ++.+|..|.||||+|+++|+.++++.|++ .||++|.+|.
T Consensus 244 ~d-in~~d~~G~TpL~~A~~~~~~eiv~~Ll~----~GAd~n~~d~ 284 (285)
T d1wdya_ 244 IE-INDTDSDGKTALLLAVELKLKKIAELLCK----RGASTDCGDL 284 (285)
T ss_dssp CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH----HSSCSCCSSC
T ss_pred CC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCcccC
Confidence 77 68999999999999999999999888888 6888998874
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Probab=99.96 E-value=5.5e-32 Score=219.50 Aligned_cols=234 Identities=13% Similarity=0.059 Sum_probs=161.8
Q ss_pred ChhHHHHHhcCCChhHHH---HHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccc--cCCCcH
Q 043678 2 DLNFFKAASAGNSEPFKD---MARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVN--AKGDTP 76 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~---ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~--~~g~tp 76 (303)
.|||+.|+..|+.+++++ |++.|++.+..+..|+||||+| +..|+.+++++|++ .|.+++..+ .+|.||
T Consensus 91 ~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~A--a~~G~~~~v~~Ll~----~g~~~~~~~~~~~g~t~ 164 (346)
T d2ajaa1 91 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA--AENGHLHVLNRLCE----LAPTEIMAMIQAENYHA 164 (346)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH--HHTTCHHHHHHHHH----SCTTTHHHHHSHHHHHH
T ss_pred CcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHH--HHCCCHHHHHHHHH----cCCCccccccccCCCCh
Confidence 379999999999887766 6788887777777799999999 99999999999999 788887766 459999
Q ss_pred HHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeeccc
Q 043678 77 LHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSD 156 (303)
Q Consensus 77 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~ 156 (303)
||+|+..|+.++|++|++.|+... ..+..+.++.||++.|+.+|+.+++++|++.|+++......
T Consensus 165 L~~Aa~~g~~~iv~~Ll~~~~~~~---------------~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~ 229 (346)
T d2ajaa1 165 FRLAAENGHLHVLNRLCELAPTEA---------------TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH 229 (346)
T ss_dssp HHHHHHTTCHHHHHHHHHSCGGGH---------------HHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHC
T ss_pred hHHHHHHhhHHHHHHHHHcCCccc---------------ccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHH
Confidence 999999999999999999887542 02234456788999999999999999999998875543322
Q ss_pred ccchhhhhhccchhHHhhhhhHHHHHHHHHHhccc------hhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHH
Q 043678 157 EKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKN------LIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDAR 230 (303)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~------~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~ 230 (303)
....... .+.+.++..... .......+|...+.............++++.++..+..+
T Consensus 230 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld 293 (346)
T d2ajaa1 230 EFEYGEK----------------YVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLD 293 (346)
T ss_dssp TTTTTTT----------------THHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHH
T ss_pred HHHcCcH----------------hhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHH
Confidence 2211110 111111111110 011111112111100000000013457889999999999
Q ss_pred HHHHHhhcCCcc----cccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 231 TVERIISENPKC----YELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 231 ~v~~Ll~~g~~~----~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
++++|++.+... .+..+.+|+||||+|++.|+.+++++|++.
T Consensus 294 ~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~ 339 (346)
T d2ajaa1 294 DIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 339 (346)
T ss_dssp HHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred HHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence 999999988643 223445789999999999999999999985
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.1e-29 Score=192.35 Aligned_cols=219 Identities=18% Similarity=0.170 Sum_probs=172.1
Q ss_pred ChhHHHHHhcCCChhHHHHHHH----HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARD----VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPL 77 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL 77 (303)
+||||.||..|+.++++.|++. |++.+..+..|.||||+| +..|+.+++++|++ .|+..+.....|.+++
T Consensus 4 ~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A--~~~~~~~iv~~Ll~----~ga~~~~~~~~~~~~~ 77 (228)
T d1k1aa_ 4 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA--VITTLPSVVRLLVT----AGASPMALDRHGQTAA 77 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHH
T ss_pred ccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceeh--hccccccccccccc----cccccccccccccccc
Confidence 5899999999999999999875 555566777899999999 99999999999999 7999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcce-eeeccc
Q 043678 78 HLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLIL-IFRDSD 156 (303)
Q Consensus 78 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~-~~~~~~ 156 (303)
+.|...++.++++.+........ ...+.......++++.+...........|.....+. ......
T Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 143 (228)
T d1k1aa_ 78 HLACEHRSPTCLRALLDSAAPGT--------------LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS 143 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTS--------------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTT
T ss_pred ccccccccccchhhhhhcccccc--------------ccccccccccccccccccccccchhhhhhhccccccccccccc
Confidence 99999999999998877643321 112345667788999999888888888776555442 333445
Q ss_pred ccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHh
Q 043678 157 EKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERII 236 (303)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll 236 (303)
+..++..+..... ..+.+.++..+.. .+..+. .|.||||+|+..|+.+++++|+
T Consensus 144 ~~~~l~~a~~~~~---------~~~~~~~~~~~~~-~~~~d~----------------~g~t~L~~A~~~g~~~~v~~Ll 197 (228)
T d1k1aa_ 144 GRSPLIHAVENNS---------LSMVQLLLQHGAN-VNAQMY----------------SGSSALHSASGRGLLPLVRTLV 197 (228)
T ss_dssp CCCHHHHHHHTTC---------HHHHHHHHHTTCC-TTCBCT----------------TSCBHHHHHHHHTCHHHHHHHH
T ss_pred hhhHHHHHHHhhh---------hhhhhhhhhhccc-cccccc----------------cCcchHHHHHHcCCHHHHHHHH
Confidence 5555555443222 4566666666554 444444 4557799999999999999999
Q ss_pred hcCCcccccccCCCChHHHHHHHhCCchhhH
Q 043678 237 SENPKCYELVDNRGWNFLHYAMVSFHVGQLR 267 (303)
Q Consensus 237 ~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~ 267 (303)
++|++ ++.+|..|+||||+|+++|+.+++|
T Consensus 198 ~~Gad-~n~~d~~G~TpL~~A~~~~~~divk 227 (228)
T d1k1aa_ 198 RSGAD-SSLKNCHNDTPLMVARSRRVIDILR 227 (228)
T ss_dssp HTTCC-TTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred HCCCC-CCCCCCCCCCHHHHHHhCCCccccC
Confidence 99999 5899999999999999999977764
|
| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: p18ink4C(ink6) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=8.1e-29 Score=178.35 Aligned_cols=153 Identities=18% Similarity=0.160 Sum_probs=119.5
Q ss_pred chhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhh
Q 043678 36 TILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQ 115 (303)
Q Consensus 36 t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~ 115 (303)
++||+| +..|+.+++++|++ .|.+++.+|..|.||||+|+ .|+.+++++|+++|++++
T Consensus 3 ~~Lh~A--a~~g~~~~v~~Ll~----~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~--------------- 60 (156)
T d1ihba_ 3 NELASA--AARGDLEQLTSLLQ----NNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD--------------- 60 (156)
T ss_dssp HHHHHH--HHHTCHHHHHHHTT----SCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT---------------
T ss_pred HHHHHH--HHcCCHHHHHHHHH----CCCCcCccCCcccccccccc-cccccccccccccccccc---------------
Confidence 688888 88888888888887 78888888888888888775 678888888888877643
Q ss_pred hhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhch
Q 043678 116 MIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKE 195 (303)
Q Consensus 116 ~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 195 (303)
..+..+.++++.++..++.+.+++++..+.+ .+.
T Consensus 61 ---~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-------------------------------------------~~~ 94 (156)
T d1ihba_ 61 ---LKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-------------------------------------------VNI 94 (156)
T ss_dssp ---CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------------------------------------------TTC
T ss_pred ---cccccCccccccccccccccccccccccccc-------------------------------------------ccc
Confidence 7777888888888888888777776555442 122
Q ss_pred hhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 196 TDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 196 ~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
.+. .+.+|+++|++.++.+++++|+++++...+.+|..|.||||+|++.++.+++++|++.
T Consensus 95 ~~~----------------~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ 155 (156)
T d1ihba_ 95 EDN----------------EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155 (156)
T ss_dssp CCT----------------TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccc----------------ccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 222 4456688888889999999999888755688888899999999999998888888774
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Probab=99.95 E-value=1.6e-30 Score=210.78 Aligned_cols=236 Identities=12% Similarity=0.052 Sum_probs=160.9
Q ss_pred hhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHH
Q 043678 29 LTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELEN 108 (303)
Q Consensus 29 ~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 108 (303)
.++..|.||||+| +.+|+.++++++.. +...|++++.++.+|+||||+|+..|+.++|++|++.|++++
T Consensus 85 ~~~~~~~t~L~~A--a~~g~~~~~~~~~~-L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~-------- 153 (346)
T d2ajaa1 85 KKGIKSEVICFVA--AITGCSSALDTLCL-LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI-------- 153 (346)
T ss_dssp HHTCCHHHHHHHH--HHHCCHHHHHHHTT-C--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH--------
T ss_pred hccCCCCcHHHHH--HHhCCHHHHHHHHH-HHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc--------
Confidence 4455689999999 99999988877421 122899999999999999999999999999999999998764
Q ss_pred HHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceee---ecccccchhhhhhccchhHHhhhhhHHHHHHHH
Q 043678 109 RIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIF---RDSDEKTNILFKFRHLDLFRIQTNSIYAALPKL 185 (303)
Q Consensus 109 ~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (303)
....+..|.||||+|+.+|+.++|++|++.|..... ....+.++++.+... ...+++++|
T Consensus 154 --------~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~---------g~~~iv~~L 216 (346)
T d2ajaa1 154 --------MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR---------GHHNVINFL 216 (346)
T ss_dssp --------HHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT---------CCHHHHHHH
T ss_pred --------ccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhc---------CHHHHHHHH
Confidence 122345689999999999999999999988865432 223333343333322 225788888
Q ss_pred HHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcc-ccccc-------CCCChHHHHH
Q 043678 186 LEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKC-YELVD-------NRGWNFLHYA 257 (303)
Q Consensus 186 l~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~-~~~~~-------~~g~tpl~~A 257 (303)
++.+.+ ++..+..+.++. ..+.++++.+...+..+....+.....+. .+..+ ..+.++++.|
T Consensus 217 l~~ga~-~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a 286 (346)
T d2ajaa1 217 LDCPVM-LAYAEIHEFEYG---------EKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRR 286 (346)
T ss_dssp TTSHHH-HHHHHHCTTTTT---------TTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCC-cchHHHHHHHcC---------cHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHH
Confidence 877665 333333333221 24556666666655555544444333221 11111 2345788899
Q ss_pred HHhCCchhhHHHhhcccc-hhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 258 MVSFHVGQLRNLLENNSL-ARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 258 ~~~~~~~~~~~ll~~~~~-~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+..++.+++++|++.... .....+..+.+|+||||+|++.|+.++
T Consensus 287 ~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~ 332 (346)
T d2ajaa1 287 NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGA 332 (346)
T ss_dssp CCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTH
T ss_pred hcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHH
Confidence 999999999999986542 223345566789999999999999875
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.95 E-value=3.2e-28 Score=193.32 Aligned_cols=208 Identities=20% Similarity=0.126 Sum_probs=163.1
Q ss_pred CCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHh
Q 043678 34 KNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAF 113 (303)
Q Consensus 34 g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 113 (303)
+.|+|+.| +..|+.+++++|++ .|++++.+|.+|.||||+|+..|+.++|++|+++|++..
T Consensus 40 ~~t~l~~A--~~~G~~~~v~~Ll~----~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~------------- 100 (291)
T d1s70b_ 40 DGAVFLAA--CSSGDTEEVLRLLE----RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN------------- 100 (291)
T ss_dssp HHHHHHHH--HHHTCHHHHHHHHH----HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-------------
T ss_pred CchHHHHH--HHcCCHHHHHHHHH----CCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccc-------------
Confidence 45899999 99999999999998 799999999999999999999999999999999987644
Q ss_pred hhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchh
Q 043678 114 RQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLI 193 (303)
Q Consensus 114 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 193 (303)
..+..+.+||+.++..++.++++.|++.+......+..+.+++..+..... .+.+..++...+...
T Consensus 101 -----~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~---------~~~~~~ll~~~~~~~ 166 (291)
T d1s70b_ 101 -----QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM---------EELLQNEVNRQGVDI 166 (291)
T ss_dssp -----CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHH---------HHHHHHHHHHHTCCH
T ss_pred -----cccccccccccccccccccchhhcccccCcccccccccCcccccccccccc---------chhcccccccccccc
Confidence 677889999999999999999999999998888888888887766543222 455566665544322
Q ss_pred chhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcc
Q 043678 194 KETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENN 273 (303)
Q Consensus 194 ~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~ 273 (303)
......+. .+. .......+...... ....+..|.||||+|+..|+.++++.|++
T Consensus 167 ~~~~~~~~----------------~~~-------~~~~~~~~~~~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-- 220 (291)
T d1s70b_ 167 EAARKEEE----------------RIM-------LRDARQWLNSGHIN-DVRHAKSGGTALHVAAAKGYTEVLKLLIQ-- 220 (291)
T ss_dssp HHHHHHHH----------------HHH-------HHHHHHHHHHTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHT--
T ss_pred cccccccc----------------ccc-------cccchhhhcccccc-cccccCCCCChhhHHHHcCChhhhccccc--
Confidence 22211110 001 11223333344444 45678899999999999999988888887
Q ss_pred cchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 274 SLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 274 ~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
.|++++.+|..|+||||+|++.|+.++
T Consensus 221 --~g~din~~~~~g~TpL~~A~~~g~~~i 247 (291)
T d1s70b_ 221 --ARYDVNIKDYDGWTPLHAAAHWGKEEA 247 (291)
T ss_dssp --TTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred --ceecccccccCCCCHHHHHHHcCCHHH
Confidence 578899999999999999999998764
|
| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: p18ink4C(ink6) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.6e-28 Score=173.53 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=135.0
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~ 82 (303)
+|||.||..|+.++|+.|+++|++++..+..|.||||+| + .|+.+++++|++ .+.+++..+..|.+||+.++.
T Consensus 3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A--~-~~~~ei~~~Ll~----~~a~~~~~~~~~~~~l~~~~~ 75 (156)
T d1ihba_ 3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM--K-LGNPEIARRLLL----RGANPDLKDRTGFAVIHDAAR 75 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHC--C-SSCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCcCccCCccccccccc--c-cccccccccccc----cccccccccccCccccccccc
Confidence 799999999999999999999998888888899999988 6 689999999998 899999999999999999999
Q ss_pred hCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhh
Q 043678 83 FGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNIL 162 (303)
Q Consensus 83 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~ 162 (303)
.+..++++.|++.+.+. +..+..|.+|+++|+..++.+++++|++.+.
T Consensus 76 ~~~~~~~~~l~~~~~~~------------------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~-------------- 123 (156)
T d1ihba_ 76 AGFLDTLQTLLEFQADV------------------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA-------------- 123 (156)
T ss_dssp HTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC--------------
T ss_pred ccccccccccccccccc------------------ccccccccccccccccccccccccccccccc--------------
Confidence 99999999999988664 4788999999999999999988888655443
Q ss_pred hhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcC
Q 043678 163 FKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISEN 239 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g 239 (303)
...+.++.. |.||||+|++.++.+++++|+++|
T Consensus 124 ----------------------------~~~~~~d~~----------------g~TpL~~A~~~~~~~iv~~Ll~~G 156 (156)
T d1ihba_ 124 ----------------------------SNVGHRNHK----------------GDTACDLARLYGRNEVVSLMQANG 156 (156)
T ss_dssp ----------------------------CCTTCCCTT----------------SCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred ----------------------------ccccccCCC----------------CCCHHHHHHHcCCHHHHHHHHhcC
Confidence 223444444 456699999999999999999987
|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: GA bindinig protein (GABP) beta 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=2e-27 Score=170.41 Aligned_cols=146 Identities=19% Similarity=0.175 Sum_probs=118.1
Q ss_pred CcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeee
Q 043678 74 DTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFR 153 (303)
Q Consensus 74 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~ 153 (303)
.||||.|+..|+.++|++|+++|++. ..|..|+||||+|+..++.+++..+.........
T Consensus 3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-------------------~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~- 62 (153)
T d1awcb_ 3 GKKLLEAARAGQDDEVRILMANGAPF-------------------TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA- 62 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCC-------------------CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-
T ss_pred CHHHHHHHHCCCHHHHHHHHHcCCCc-------------------ccccCCCccccccccccccccccccccccccccc-
Confidence 49999999999999999999999864 2688999999999999999988775544332111
Q ss_pred cccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHH
Q 043678 154 DSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVE 233 (303)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~ 233 (303)
.+. .+.++++.++...+.++++
T Consensus 63 ------------------------------------------~~~----------------~~~~~~~~~~~~~~~~~~~ 84 (153)
T d1awcb_ 63 ------------------------------------------RTK----------------VDRTPLHMAASEGHANIVE 84 (153)
T ss_dssp ------------------------------------------CCT----------------TCCCHHHHHHHHTCHHHHH
T ss_pred ------------------------------------------ccc----------------ccccccccccccccceeee
Confidence 111 3446688888888888999
Q ss_pred HHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCCCCCcHHHHHHhcCCCCC
Q 043678 234 RIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDAKGNTPLHVLAAVRPKEF 302 (303)
Q Consensus 234 ~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~~~~~i 302 (303)
+++.+|++ .+.++..|+||||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+.+|+.||
T Consensus 85 ~l~~~~~~-~~~~~~~g~T~L~~A~~~g~~~iv~~ll~----~gad~~~~d~~g~Tpl~~A~~~g~~ei 148 (153)
T d1awcb_ 85 VLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIK----YGADVHTQSKFCKTAFDISIDNGNEDL 148 (153)
T ss_dssp HHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred cccccCCc-cccccccCchHHHhhhhcchhheeeeccc----cccCCcccCCCCCCHHHHHHHcCCHHH
Confidence 99988888 47788889999999999999888887776 577888889999999999998888764
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.94 E-value=6.1e-27 Score=176.73 Aligned_cols=185 Identities=20% Similarity=0.168 Sum_probs=155.2
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.||||+||..|+.+++++|++.|.++...+..+.++++.+ +..++.+....... ............|.++.+.+.
T Consensus 24 ~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 98 (209)
T d1ot8a_ 24 ETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA--VAADAMGVFQILLR---NRATNLNARMHDGTTPLILAA 98 (209)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHT---CTTCCTTCCCTTCCCHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccc--cccccccccccccc---ccccccccccccccccccccc
Confidence 4899999999999999999999888777888899999999 88777766555544 133444456667899999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
........+.|.+.++++ +.++..|.|||++++.++..++++.++..+.+
T Consensus 99 ~~~~~~~~~~L~~~~~~~------------------~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~------------ 148 (209)
T d1ot8a_ 99 RLAIEGMVEDLITADADI------------------NAADNSGKTALHWAAAVNNTEAVNILLMHHAN------------ 148 (209)
T ss_dssp HTTCTTHHHHHHHTTCCT------------------TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC------------
T ss_pred cccchhhhhhhhhhcccc------------------cccCCCCCCcchhhcccCcceeeeeecccccc------------
Confidence 999999999999988764 47889999999999999999988887766554
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPK 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 241 (303)
++..|. .|.||||+|+..|+.+++++|+++|++
T Consensus 149 -------------------------------~~~~d~----------------~g~TpL~~A~~~g~~~~v~~Ll~~gad 181 (209)
T d1ot8a_ 149 -------------------------------RDAQDD----------------KDETPLFLAAREGSYEASKALLDNFAN 181 (209)
T ss_dssp -------------------------------TTCCCT----------------TCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred -------------------------------cccccc----------------ccccccchhccccHHHHHHHHHHCCCC
Confidence 233333 345679999999999999999999999
Q ss_pred ccccccCCCChHHHHHHHhCCchhhHHH
Q 043678 242 CYELVDNRGWNFLHYAMVSFHVGQLRNL 269 (303)
Q Consensus 242 ~~~~~~~~g~tpl~~A~~~~~~~~~~~l 269 (303)
++.+|..|+||||+|+++|+.+++++|
T Consensus 182 -~n~~d~~g~Tpl~~A~~~~~~~iv~lL 208 (209)
T d1ot8a_ 182 -REITDHMDRLPRDVASERLHHDIVRLL 208 (209)
T ss_dssp -TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred -CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence 589999999999999999999998865
|
| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p19ink4D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.9e-27 Score=169.91 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=102.9
Q ss_pred hhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhh
Q 043678 37 ILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQM 116 (303)
Q Consensus 37 ~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~ 116 (303)
.|+.| +..|+.+++++|++ ..+.+++.+|..|+||||+|+ .|+.+++++|++++.+++
T Consensus 5 ~L~~A--a~~g~~~~vk~lL~---~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~---------------- 62 (156)
T d1bd8a_ 5 RLSGA--AARGDVQEVRRLLH---RELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN---------------- 62 (156)
T ss_dssp HHHHH--HHHTCHHHHHHHHH---TTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTT----------------
T ss_pred HHHHH--HHcCCHHHHHHHHH---hCCCCCCccCCCCCccccccc-cccccccccccccccccc----------------
Confidence 47777 77777777777765 246667777777777777765 366777777777665533
Q ss_pred hccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchh
Q 043678 117 IRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKET 196 (303)
Q Consensus 117 ~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 196 (303)
..+..|.+|++.++..++.++++++++.++++ +..
T Consensus 63 --~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~-------------------------------------------n~~ 97 (156)
T d1bd8a_ 63 --VQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-------------------------------------------NVP 97 (156)
T ss_dssp --CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------------------------------------------CCC
T ss_pred --cccccccccccccccccccccccccccccccc-------------------------------------------ccc
Confidence 56666777777777777777776665555432 222
Q ss_pred hhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhc
Q 043678 197 DQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLEN 272 (303)
Q Consensus 197 ~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 272 (303)
+. .|.||||+|++.|+.+++++|+ .|++ ++.+|..|+||||+|++.|+.++++.|+++
T Consensus 98 ~~----------------~~~t~L~~A~~~~~~~i~~~L~-~~~~-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h 155 (156)
T d1bd8a_ 98 DG----------------TGALPIHLAVQEGHTAVVSFLA-AESD-LHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CT----------------TSCCHHHHHHHHTCHHHHHHHH-TTSC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cC----------------CCCeeecccccccccccccccc-cccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence 22 3345577777777888777666 5666 477778888888888888887777777654
|
| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p19ink4D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.4e-27 Score=168.95 Aligned_cols=151 Identities=19% Similarity=0.238 Sum_probs=130.4
Q ss_pred hhHHHHHhcCCChhHHHHHHH-HHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARD-VIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
.+|+.||..|+.++|+.|+++ +.+++..+..|.||||+| +. |+.+++++|++ .+.+++..+..|.+|++.++
T Consensus 4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A--~~-~~~~~v~~Ll~----~~~~~~~~~~~~~~~l~~~~ 76 (156)
T d1bd8a_ 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM--MF-GSTAIALELLK----QGASPNVQDTSGTSPVHDAA 76 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHS--CT-TCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccc--cc-ccccccccccc----cccccccccccccccccccc
Confidence 579999999999999999987 666667788899999999 75 78899999998 78899999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchh
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNI 161 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~ 161 (303)
..++.++++++++.|+++ +.+|..|.||||+|+..|+.+++++|. .+++
T Consensus 77 ~~~~~~~~~~~l~~~~~~------------------n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~------------ 125 (156)
T d1bd8a_ 77 RTGFLDTLKVLVEHGADV------------------NVPDGTGALPIHLAVQEGHTAVVSFLA-AESD------------ 125 (156)
T ss_dssp HTTCHHHHHHHHHTTCCS------------------CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC------------
T ss_pred cccccccccccccccccc------------------ccccCCCCeeecccccccccccccccc-cccc------------
Confidence 999999999999998764 478899999999999999999998865 3333
Q ss_pred hhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhc
Q 043678 162 LFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISE 238 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~ 238 (303)
++..+. .|.||||+|++.|+.+++++|+++
T Consensus 126 -------------------------------~~~~d~----------------~G~TpL~~A~~~g~~~iv~~Ll~h 155 (156)
T d1bd8a_ 126 -------------------------------LHRRDA----------------RGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp -------------------------------TTCCCT----------------TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred -------------------------------ccccCC----------------CCCCHHHHHHHcCCHHHHHHHHhh
Confidence 333344 345669999999999999999986
|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: GA bindinig protein (GABP) beta 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=1.3e-26 Score=166.01 Aligned_cols=150 Identities=21% Similarity=0.248 Sum_probs=122.2
Q ss_pred CchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhh
Q 043678 35 NTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFR 114 (303)
Q Consensus 35 ~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 114 (303)
.||||.| ++.|+.+++++|++ .|++++ .+..|.||||+|+..++.++++.++.......
T Consensus 3 ~t~L~~A--a~~g~~~~v~~LL~----~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~-------------- 61 (153)
T d1awcb_ 3 GKKLLEA--ARAGQDDEVRILMA----NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-------------- 61 (153)
T ss_dssp HHHHHHH--HHHTCHHHHHHHHH----HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT--------------
T ss_pred CHHHHHH--HHCCCHHHHHHHHH----cCCCcc-cccCCCcccccccccccccccccccccccccc--------------
Confidence 3899999 99999999999988 566655 68889999999999999999988887654432
Q ss_pred hhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhc
Q 043678 115 QMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIK 194 (303)
Q Consensus 115 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 194 (303)
..+..+.++++.++...+.++++++...+.+ ..
T Consensus 62 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------------------------------~~ 94 (153)
T d1awcb_ 62 ----ARTKVDRTPLHMAASEGHANIVEVLLKHGAD-------------------------------------------VN 94 (153)
T ss_dssp ----CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-------------------------------------------TT
T ss_pred ----ccccccccccccccccccceeeecccccCCc-------------------------------------------cc
Confidence 5566778899999999998888887666553 22
Q ss_pred hhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHH
Q 043678 195 ETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNL 269 (303)
Q Consensus 195 ~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~l 269 (303)
..+. .|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.+|+.+++++|
T Consensus 95 ~~~~----------------~g~T~L~~A~~~g~~~iv~~ll~~gad-~~~~d~~g~Tpl~~A~~~g~~eiv~lL 152 (153)
T d1awcb_ 95 AKDM----------------LKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CCCT----------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cccc----------------cCchHHHhhhhcchhheeeeccccccC-CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence 2233 455779999999999999999999999 588999999999999999998887654
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=5.9e-27 Score=186.44 Aligned_cols=190 Identities=17% Similarity=0.159 Sum_probs=118.8
Q ss_pred Cchhhhcc-ccCCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcH---
Q 043678 62 CPALLLQV-NAKGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNV--- 137 (303)
Q Consensus 62 ~~~~~~~~-~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~--- 137 (303)
.+.+++.. |..|+||||+|+..|+.++|++|+++|++++ .+|..|+||||.|+..++.
T Consensus 95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~------------------~~d~~G~TpL~~A~~~~~~~~~ 156 (301)
T d1sw6a_ 95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL------------------YGDNMGESCLVKAVKSVNNYDS 156 (301)
T ss_dssp SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------------------BCCTTCCCHHHHHHHSSHHHHT
T ss_pred cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC------------------cCCcccccHHHHhhhcccchhh
Confidence 34556654 7889999999999999999999999888754 7888899999999876652
Q ss_pred ----HHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhh---HHHHHHHHHHhccchhchhhhcCCCcccccccc
Q 043678 138 ----DLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNS---IYAALPKLLEKKKNLIKETDQYGWTPIQSTSNI 210 (303)
Q Consensus 138 ----~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~ 210 (303)
++++++. ..+...+..|+++++............... ...++.+++..+..........+.++
T Consensus 157 ~~~~~ll~~l~---~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------- 226 (301)
T d1sw6a_ 157 GTFEALLDYLY---PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK------- 226 (301)
T ss_dssp TCHHHHHHHHG---GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--------------
T ss_pred hhHHHHHHHHh---hhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccch-------
Confidence 3333333 335566777888877655322211111111 12334444454444333333333322
Q ss_pred cccCCcccHHhHHHhcCCHHH-----HHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCCC
Q 043678 211 ADKDRKMTALHLAAGKGDART-----VERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGDA 285 (303)
Q Consensus 211 ~~~~~~~t~L~~a~~~~~~~~-----v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d~ 285 (303)
++.+........ +..++... +|.+|.+|+||||+|++.|+.+++++|++ .|++++.+|+
T Consensus 227 ---------~~~~~~~~~~~~~~~~~~~~~~~~~---in~~D~~G~TpLh~A~~~g~~~iv~~Ll~----~GAd~~~~n~ 290 (301)
T d1sw6a_ 227 ---------PNDKNGERKDSILENLDLKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLD----YGADPFIANK 290 (301)
T ss_dssp ------------------CHHHHHCSHHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHH----TTCCTTCCCT
T ss_pred ---------hHHHHhcchHHHHHHHhhHHHHhcC---ccCCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCC
Confidence 222222221111 22233322 47789999999999999999999998887 5888999999
Q ss_pred CCCcHHHHHH
Q 043678 286 KGNTPLHVLA 295 (303)
Q Consensus 286 ~g~tpL~~A~ 295 (303)
.|+|||++|+
T Consensus 291 ~G~Tpl~~A~ 300 (301)
T d1sw6a_ 291 SGLRPVDFGA 300 (301)
T ss_dssp TSCCGGGGTC
T ss_pred CCCCHHHHcC
Confidence 9999999986
|
| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myotrophin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.93 E-value=6.2e-28 Score=164.41 Aligned_cols=107 Identities=21% Similarity=0.149 Sum_probs=101.2
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAA 81 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~ 81 (303)
+|||++|+..|+.++|++|+++|++....+..|.||||+| +..|+.+++++|++ .|.+++.+|..|.||||+|+
T Consensus 3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A--~~~~~~~~~~~ll~----~g~din~~d~~g~tpLh~A~ 76 (118)
T d1myoa_ 3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYA--ADCGQLEILEFLLL----KGADINAPDKHHITPLLSAV 76 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHH--HHHSTTTHHHHHHH----SSCTTTCCSSSCSCHHHHHH
T ss_pred ChHHHHHHHCCCHHHHHHHHHhhhcccccccccccccccc--cccccccccccccc----ccceeeecccccccchhhhh
Confidence 6999999999999999999999998888888899999999 99999999999998 89999999999999999999
Q ss_pred HhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHH
Q 043678 82 KFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAV 132 (303)
Q Consensus 82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~ 132 (303)
..|+.+++++|+++|+++ +.+|..|.||||+|.
T Consensus 77 ~~~~~~~v~~Ll~~Gad~------------------~~~d~~G~t~l~~a~ 109 (118)
T d1myoa_ 77 YEGHVSCVKLLLSKGADK------------------TVKGPDGLTALEATD 109 (118)
T ss_dssp TTTCCHHHHHHHTTCCCS------------------SSSSSSTCCCCCTCS
T ss_pred hcCchhhhhhhhcccccc------------------eeeCCCCCCHHHHHh
Confidence 999999999999999875 488999999999984
|
| >d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p16ink4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.1e-26 Score=159.87 Aligned_cols=119 Identities=13% Similarity=0.050 Sum_probs=109.1
Q ss_pred ChhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCC-cHHHHH
Q 043678 2 DLNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGD-TPLHLA 80 (303)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~-tpL~~A 80 (303)
.++||.|+..|+.++|++|+++|++++..+..|.||||+| + .|+.+++++|++ .|.+++.++..|. ||||+|
T Consensus 4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a--~-~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~L~~A 76 (125)
T d1bi7b_ 4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM--M-MGSARVAELLLL----HGAEPNCADPATLTRPVHDA 76 (125)
T ss_dssp TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSS--C-TTCHHHHHHHHT----TTCCCCCCCTTTCCCHHHHH
T ss_pred hhHHHHHHHCCCHHHHHHHHHcCCcccccccccccccccc--c-cccccccccccc----cccccccccccccccccccc
Confidence 4689999999999999999999998888888899999977 5 689999999998 7999999988876 699999
Q ss_pred HHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhh
Q 043678 81 AKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKT 145 (303)
Q Consensus 81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~ 145 (303)
+..|+.+++++|+++|+++ +.+|..|+||||+|+.+|+.+++++|+.
T Consensus 77 ~~~g~~~~v~~Ll~~ga~~------------------~~~d~~G~T~l~~A~~~g~~~~v~~Lls 123 (125)
T d1bi7b_ 77 AREGFLDTLVVLHRAGARL------------------DVRDAWGRLPVDLAEELGHRDVARYLRA 123 (125)
T ss_dssp HHHTCHHHHHHHHHHTCCS------------------SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred ccccccccccccccccccc------------------ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 9999999999999999874 4889999999999999999999999864
|
| >d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p16ink4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5e-26 Score=156.57 Aligned_cols=122 Identities=19% Similarity=0.101 Sum_probs=104.6
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCccee
Q 043678 72 KGDTPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILI 151 (303)
Q Consensus 72 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~ 151 (303)
.+.++||+|+..|+.++|++|+++|++++ .++..|.||+|.|+ .|+.+++++|++.|++++
T Consensus 2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n------------------~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~ 62 (125)
T d1bi7b_ 2 PSADWLATAAARGRVEEVRALLEAGANPN------------------APNSYGRRPIQVMM-MGSARVAELLLLHGAEPN 62 (125)
T ss_dssp CSTTHHHHHHHHTCHHHHHHHHTTTCCTT------------------CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC
T ss_pred CChhHHHHHHHCCCHHHHHHHHHcCCccc------------------cccccccccccccc-cccccccccccccccccc
Confidence 35689999999999999999999998754 88999999999775 689999999888877643
Q ss_pred eecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHH
Q 043678 152 FRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDART 231 (303)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~ 231 (303)
..+. . .+.||||+|++.|+.++
T Consensus 63 ~~~~-------------------------------------------~---------------~~~~~L~~A~~~g~~~~ 84 (125)
T d1bi7b_ 63 CADP-------------------------------------------A---------------TLTRPVHDAAREGFLDT 84 (125)
T ss_dssp CCCT-------------------------------------------T---------------TCCCHHHHHHHHTCHHH
T ss_pred cccc-------------------------------------------c---------------ccccccccccccccccc
Confidence 2221 1 23468999999999999
Q ss_pred HHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhh
Q 043678 232 VERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLE 271 (303)
Q Consensus 232 v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~ 271 (303)
+++|+++|++ ++.+|..|+||||+|+++|+.+++++|+.
T Consensus 85 v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Lls 123 (125)
T d1bi7b_ 85 LVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA 123 (125)
T ss_dssp HHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred cccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 9999999999 58999999999999999999999988864
|
| >d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 53BP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=8.3e-26 Score=156.49 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=106.9
Q ss_pred hhHHHHHhcCCChhHHHHHHHHHHhhhhcccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHH
Q 043678 3 LNFFKAASAGNSEPFKDMARDVIESLLTAKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAK 82 (303)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~ 82 (303)
++|+.|+..|+.++|++|+++|++++..+..|.||||+| +..|+.+++++|++ .|.+++.+|.+|+||||+|+.
T Consensus 3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A--~~~~~~~~~~~ll~----~g~~~~~~d~~g~tpLh~A~~ 76 (130)
T d1ycsb1 3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNA--VCAGHTEIVKFLVQ----FGVNVNAADSDGWTPLHCAAS 76 (130)
T ss_dssp HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHH--HHHTCHHHHHHHHH----HTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccc--cccccccccccccc----cccccccccccCcccccccch
Confidence 578999999999999999999998888888899999999 99999999999998 689999999999999999999
Q ss_pred hCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhcccc-CCCccHHHHH--HhcCcHHHHHhHhhC
Q 043678 83 FGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVN-NEKNTALHEA--VSHGNVDLFKLKKTN 146 (303)
Q Consensus 83 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~~A--~~~~~~~~v~~L~~~ 146 (303)
.|+.+++++|+++|++++ ..+ ..+.||++++ ...|+.+++++|++.
T Consensus 77 ~g~~~~v~~Ll~~ga~v~------------------~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~ 125 (130)
T d1ycsb1 77 CNNVQVCKFLVESGAAVF------------------AMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 125 (130)
T ss_dssp TTCHHHHHHHHHTTCCTT------------------CCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCcc------------------cccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence 999999999999998864 444 3477776654 678899999998754
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=4e-25 Score=175.80 Aligned_cols=181 Identities=15% Similarity=0.100 Sum_probs=115.1
Q ss_pred cccCCchhhhhhhhcccchhhHHHHHHHHHhCchhhhccccCCCcHHHHHHHhCCH---HHHHHHHHHhHHhhcCchHHH
Q 043678 31 AKAKNTILHINIISSERENVSTKFVEEILEKCPALLLQVNAKGDTPLHLAAKFGHF---DIVRVLIERAKLAQRGDEELE 107 (303)
Q Consensus 31 ~~~g~t~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~---~~v~~Ll~~~~~~~~~~~~~~ 107 (303)
|..|+||||+| +..|+.+++++|++ .|++++.+|..|+||||.||..++. ..+..+++...
T Consensus 104 D~~G~T~LH~A--a~~g~~~~v~~Ll~----~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---------- 167 (301)
T d1sw6a_ 104 DEHGNTPLHWL--TSIANLELVKHLVK----HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---------- 167 (301)
T ss_dssp STTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG----------
T ss_pred CCCCCCHHHHH--HHcCCHHHHHHHHH----CCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh----------
Confidence 66699999999 99999999999998 8999999999999999999987752 22333443321
Q ss_pred HHHHHhhhhhccccCCCccHHHHHHhcCc----HHHHH--------hHhhCCcc-eeeecccccchhhhhhccchhHHhh
Q 043678 108 NRIEAFRQMIRMVNNEKNTALHEAVSHGN----VDLFK--------LKKTNNLI-LIFRDSDEKTNILFKFRHLDLFRIQ 174 (303)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~t~l~~A~~~~~----~~~v~--------~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (303)
..+...|..|+||||+++..+. ...++ ++...+.. .........................
T Consensus 168 -------~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
T d1sw6a_ 168 -------PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE 240 (301)
T ss_dssp -------GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHH
T ss_pred -------hhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHH
Confidence 1145778999999998886554 22332 23333322 2222222222222111111000000
Q ss_pred hhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHH
Q 043678 175 TNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFL 254 (303)
Q Consensus 175 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl 254 (303)
...+..++. ..++.+|.+ |.||||+|++.|+.++|++|+++|++ ++++|..|+|||
T Consensus 241 ----~~~~~~~~~---~~in~~D~~----------------G~TpLh~A~~~g~~~iv~~Ll~~GAd-~~~~n~~G~Tpl 296 (301)
T d1sw6a_ 241 ----NLDLKWIIA---NMLNAQDSN----------------GDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPV 296 (301)
T ss_dssp ----HCSHHHHHH---HTTTCCCTT----------------SCCHHHHHHHHCCHHHHHHHHHTTCC-TTCCCTTSCCGG
T ss_pred ----HHhhHHHHh---cCccCCCCC----------------CCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHH
Confidence 011111221 123444544 55669999999999999999999999 599999999999
Q ss_pred HHHH
Q 043678 255 HYAM 258 (303)
Q Consensus 255 ~~A~ 258 (303)
++|+
T Consensus 297 ~~A~ 300 (301)
T d1sw6a_ 297 DFGA 300 (301)
T ss_dssp GGTC
T ss_pred HHcC
Confidence 9986
|
| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myotrophin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.91 E-value=3.1e-25 Score=150.90 Aligned_cols=110 Identities=19% Similarity=0.126 Sum_probs=95.9
Q ss_pred ccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcc
Q 043678 125 NTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPI 204 (303)
Q Consensus 125 ~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l 204 (303)
.|||++|+++|+.++|++|++.|+++ +..+..
T Consensus 3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-------------------------------------------n~~~~~----- 34 (118)
T d1myoa_ 3 DKEFMWALKNGDLDEVKDYVAKGEDV-------------------------------------------NRTLEG----- 34 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTTCCC-------------------------------------------CCCSSS-----
T ss_pred ChHHHHHHHCCCHHHHHHHHHhhhcc-------------------------------------------cccccc-----
Confidence 58999999999999999988887763 333333
Q ss_pred cccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccccccCCCChHHHHHHHhCCchhhHHHhhcccchhcccccCC
Q 043678 205 QSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYELVDNRGWNFLHYAMVSFHVGQLRNLLENNSLARSLIDEGD 284 (303)
Q Consensus 205 ~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~d 284 (303)
|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|++ .|++++.+|
T Consensus 35 -----------g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~~~~~~~~v~~Ll~----~Gad~~~~d 98 (118)
T d1myoa_ 35 -----------GRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLLS----KGADKTVKG 98 (118)
T ss_dssp -----------SCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHHTTTCCHHHHHHHT----TCCCSSSSS
T ss_pred -----------ccccccccccccccccccccccccce-eeecccccccchhhhhhcCchhhhhhhhc----ccccceeeC
Confidence 44669999999999999999999999 58999999999999999999999999988 578899999
Q ss_pred CCCCcHHHHHHhcC
Q 043678 285 AKGNTPLHVLAAVR 298 (303)
Q Consensus 285 ~~g~tpL~~A~~~~ 298 (303)
.+|+||||+|....
T Consensus 99 ~~G~t~l~~a~~~~ 112 (118)
T d1myoa_ 99 PDGLTALEATDNQA 112 (118)
T ss_dssp SSTCCCCCTCSSTT
T ss_pred CCCCCHHHHHhHHH
Confidence 99999999985543
|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Pyk2-associated protein beta species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=2.5e-24 Score=152.72 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=106.1
Q ss_pred hHHHHHhcCCChhHHHHHHHHHHhhh------hcccCCchhhhhhhhc---ccchhhHHHHHHHHHhCchhhhccccCCC
Q 043678 4 NFFKAASAGNSEPFKDMARDVIESLL------TAKAKNTILHINIISS---ERENVSTKFVEEILEKCPALLLQVNAKGD 74 (303)
Q Consensus 4 ~L~~A~~~g~~~~v~~ll~~~~~~~~------~~~~g~t~Lh~A~~~~---~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~ 74 (303)
.|+.|++.+++..+..++..|.+... .+..|.||||+| +. .+..+++++|++ .|.+++.+|..|.
T Consensus 9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A--~~~~~~~~~~iv~~Ll~----~gadin~~d~~g~ 82 (154)
T d1dcqa1 9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLA--VRSVDRTSLHIVDFLVQ----NSGNLDKQTGKGS 82 (154)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHH--HHHCCTTTHHHHHHHHH----HCSCTTCCCTTCC
T ss_pred HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHH--HHhcCCCCHHHHHHHHH----cCCChhhhhhhhc
Confidence 57899999999999999988765432 245689999999 64 467889999998 6899999999999
Q ss_pred cHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCc
Q 043678 75 TPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNL 148 (303)
Q Consensus 75 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~ 148 (303)
||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++.+.
T Consensus 83 TpLh~A~~~~~~~~v~~Ll~~gad~~------------------~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~ 138 (154)
T d1dcqa1 83 TALHYCCLTDNAECLKLLLRGKASIE------------------IANESGETPLDIAKRLKHEHCEELLTQALS 138 (154)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccCcccc------------------ccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence 99999999999999999999998854 889999999999999999999999886543
|
| >d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 53BP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=3.5e-23 Score=143.10 Aligned_cols=120 Identities=20% Similarity=0.168 Sum_probs=100.2
Q ss_pred cHHHHHHHhCCHHHHHHHHHHhHHhhcCchHHHHHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeec
Q 043678 75 TPLHLAAKFGHFDIVRVLIERAKLAQRGDEELENRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRD 154 (303)
Q Consensus 75 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~ 154 (303)
++|+.|+..|+.++|++|+++|+++ +.+|..|+||||+|+..++.+++++|++.|++
T Consensus 3 ~lL~~A~~~G~~~~v~~Ll~~g~d~------------------n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~----- 59 (130)
T d1ycsb1 3 ALLLDSSLEGEFDLVQRIIYEVDDP------------------SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN----- 59 (130)
T ss_dssp HHHHHHHHHTCHHHHHHHTSTTSSC------------------CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-----
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCc------------------cccccccccccccccccccccccccccccccc-----
Confidence 6899999999999999999999874 48899999999999999999999887776664
Q ss_pred ccccchhhhhhccchhHHhhhhhHHHHHHHHHHhccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHH
Q 043678 155 SDEKTNILFKFRHLDLFRIQTNSIYAALPKLLEKKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVER 234 (303)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~ 234 (303)
++..|.+ |.||||+|+.+|+.+++++
T Consensus 60 --------------------------------------~~~~d~~----------------g~tpLh~A~~~g~~~~v~~ 85 (130)
T d1ycsb1 60 --------------------------------------VNAADSD----------------GWTPLHCAASCNNVQVCKF 85 (130)
T ss_dssp --------------------------------------TTCCCTT----------------CCCHHHHHHHTTCHHHHHH
T ss_pred --------------------------------------ccccccc----------------CcccccccchhhHHHHHHH
Confidence 3334444 4566999999999999999
Q ss_pred HhhcCCccccccc-CCCChHHHHH--HHhCCchhhHHHhhc
Q 043678 235 IISENPKCYELVD-NRGWNFLHYA--MVSFHVGQLRNLLEN 272 (303)
Q Consensus 235 Ll~~g~~~~~~~~-~~g~tpl~~A--~~~~~~~~~~~ll~~ 272 (303)
|+++|+++ +..+ ..|+||++++ ++.|+.+++++|+..
T Consensus 86 Ll~~ga~v-~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~ 125 (130)
T d1ycsb1 86 LVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 125 (130)
T ss_dssp HHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred HHHcCCCc-ccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence 99999995 6555 5688887765 577889999998874
|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Pyk2-associated protein beta species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.85 E-value=3.6e-21 Score=136.24 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=99.9
Q ss_pred hhhhhhhhcccchhhHHHHHHHHHhCchhhhcc------ccCCCcHHHHHHHh---CCHHHHHHHHHHhHHhhcCchHHH
Q 043678 37 ILHINIISSERENVSTKFVEEILEKCPALLLQV------NAKGDTPLHLAAKF---GHFDIVRVLIERAKLAQRGDEELE 107 (303)
Q Consensus 37 ~Lh~A~~~~~~~~~~~~~Ll~~~~~~~~~~~~~------~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~ 107 (303)
.|+.| ++.++...+..++. .|.+++.. +..|.||||+|+.. ++.+++++|+++|+++
T Consensus 9 ~L~~A--v~~~dl~~l~~~~~----~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-------- 74 (154)
T d1dcqa1 9 SLCEA--VKTRDIFGLLQAYA----DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-------- 74 (154)
T ss_dssp HHHHH--HHTTCHHHHHHHHH----TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT--------
T ss_pred HHHHH--HHhCCHHHHHHHHH----cCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh--------
Confidence 35566 78888777776665 56655544 67799999999975 6789999999999874
Q ss_pred HHHHHhhhhhccccCCCccHHHHHHhcCcHHHHHhHhhCCcceeeecccccchhhhhhccchhHHhhhhhHHHHHHHHHH
Q 043678 108 NRIEAFRQMIRMVNNEKNTALHEAVSHGNVDLFKLKKTNNLILIFRDSDEKTNILFKFRHLDLFRIQTNSIYAALPKLLE 187 (303)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 187 (303)
+.+|..|+||||+|+..|+.+++++|++.|++
T Consensus 75 ----------n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad-------------------------------------- 106 (154)
T d1dcqa1 75 ----------DKQTGKGSTALHYCCLTDNAECLKLLLRGKAS-------------------------------------- 106 (154)
T ss_dssp ----------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC--------------------------------------
T ss_pred ----------hhhhhhhccccccccccccccccccccccCcc--------------------------------------
Confidence 48999999999999999999999998887775
Q ss_pred hccchhchhhhcCCCcccccccccccCCcccHHhHHHhcCCHHHHHHHhhcCCcccc
Q 043678 188 KKKNLIKETDQYGWTPIQSTSNIADKDRKMTALHLAAGKGDARTVERIISENPKCYE 244 (303)
Q Consensus 188 ~~~~~~~~~~~~g~t~l~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~ 244 (303)
++..|.. |.||||+|++.|+.+++++|++.++...+
T Consensus 107 -----~~~~d~~----------------g~tpL~~A~~~~~~~i~~~L~~~~~~~~~ 142 (154)
T d1dcqa1 107 -----IEIANES----------------GETPLDIAKRLKHEHCEELLTQALSGRFN 142 (154)
T ss_dssp -----TTCCCTT----------------SCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred -----ccccCCC----------------CCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 3333443 45669999999999999999998876543
|