Citrus Sinensis ID: 043683

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFRKMLRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEARTQYFDLRILEDALQETQLLEAALWKEILVCLCSFGFCMKCILNQIHNTYSIKCWR
Secondary Structure (PSIPRED)
cccHHHcccccccccccccccccHHHHHHHccccccccEEEEEEcccccccccccHHHHHccccEEEEcccccccccccccccccEEEEcccccccccccccccccccccEEccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccEEEccHHHHHHHHHccccccEEEEEEEEcccccEccccHHHHHHHHHEEEccccccccccccccHHHHEEEcccccHHHHHccccHHHHHHcccccccccccHcccccHHHHHHHccEEEccccccEEcccccccHHHHcEEcccccHHHcccccccccccEEEccccccHHcccccHHHHHHHHHHHccHccccHcccccHHcHHHHHHHHcccccHHHHHHHHHHHcccccEEcccc
Coil and Loop (DISEMBL)
MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSkvkeihlnpDTFRKMLRYFhwhgcplkslpsnihleklvllemphsnIQQLLDSVRGiltrtpntplgqhlntlvlpenigqlsslgkldlqknnferiPESVIQLSKLGRLCLRYWERlqslpklpcklheldahhcTALESLSGLFSSFEARTQYFDLRILEDALQETQLLEAALWKEILVCLCSFGFCMKCILNQIHNTYSIKCWR
Flexible Loop (DISEMBL)
mgweivrqESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFRKMLRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEARTQYFDLRILEDALQETQLLEAALWKEILVCLCSFGFCMKCILNQIHNTYSIKCWR
Low Complexity Region (SEG)
MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFRKMLRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTAleslsglfssfeARTQYFDLRIledalqetqlleaalWKEILVCLCSFGFCMKCILNQIHNTYSIKCWR
Disordered region (IsUnstruct)
*************LGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFRKMLRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEARTQYFDLRILEDALQETQLLEAALWKEILVCLCSFGFCMKCILNQIHNTYSIKCW*
Disordered Region (DISOPRED)
MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFRKMLRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEARTQYFDLRILEDALQETQLLEAALWKEILVCLCSFGFCMKCILNQIHNTYSIKCWR
Disordered Region (DISEMBL)
MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFRKMLRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEARTQYFDLRILEDALQETQLLEAALWKEILVCLCSFGFCMKCILNQIHNTYSIKCWR
Disordered Region (DISPRO)
*GWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFRKMLRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEARTQYFDLRILEDALQETQLLEAALWKEILVCLCSFGFCMKCILNQIHNTYSIKCWR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFRKMLRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEARTQYFDLRILEDALQETQLLEAALWKEILVCLCSFGFCMKCILNQIHNTYSIKCWR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
O82500	1095	Putative disease resistan	no	no	0.730	0.170	0.277	7e-10
Q40392	1144	TMV resistance protein N	N/A	no	0.0	0.0	0.568	1e-09
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.375	0.050	0.328	1e-07
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.648	0.127	0.276	3e-06
B5DX45	629	Leucine-rich repeat prote	yes	no	0.472	0.192	0.313	0.0002
B4IBI9	683	Leucine-rich repeat prote	N/A	no	0.472	0.177	0.305	0.0003
B3P3E8	644	Leucine-rich repeat prote	N/A	no	0.316	0.125	0.358	0.0003
B4PU77	645	Leucine-rich repeat prote	N/A	no	0.316	0.125	0.358	0.0003
B4QVR7	680	Leucine-rich repeat prote	N/A	no	0.472	0.177	0.305	0.0003
Q9VEK6	641	Leucine-rich repeat prote	yes	no	0.316	0.126	0.358	0.0003

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 44/231 (19%)

Query: 1   MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVK-EIHLNPDTF 59
           +G E+VR++S+ + GKR +L + +++   L++N G   + GI L M ++K E++++  TF
Sbjct: 491 LGKEVVRKQSIYEPGKRQFLMNAKETCGVLSNNTGTGTVLGISLDMCEIKEELYISEKTF 550

Query: 60  RKM----------------------------------LRYFHWHGCPLKSLPSNIHLEKL 85
            +M                                  LR  HW   PL+  PS+   E L
Sbjct: 551 EEMRNLVYLKFYMSSPIDDKMKVKLQLPEEGLSYLPQLRLLHWDAYPLEFFPSSFRPECL 610

Query: 86  VLLEMPHSNIQQLLDSVRGILT-RTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ-KNNF 143
           V L M HS +++L   V+ +   RT N  L    N  +LP N+ + + L +LDL    + 
Sbjct: 611 VELNMSHSKLKKLWSGVQPLRNLRTMN--LNSSRNLEILP-NLMEATKLNRLDLGWCESL 667

Query: 144 ERIPESVIQLSKLGRLCLRYWERLQSLP---KLPCKLHELDAHHCTALESL 191
             +P S+  L  L  L +   ++L+ +P    LP  L  L   +CT L++ 
Sbjct: 668 VELPSSIKNLQHLILLEMSCCKKLEIIPTNINLPS-LEVLHFRYCTRLQTF 717

Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 41/58 (70%)

Query: 123 LPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHEL 180
           LPE IG LSSL KLDL +NNFE +P S+ QL  L  L L+  +RL  LP+LP +L+EL
Sbjct: 850 LPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNEL 907

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 54/128 (42%), Gaps = 32/128 (25%)

Query: 2    GWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFRK 61
            G EIVRQES +  G RS LW+ +       ++ G   IEGI L M  +K    NP+ F K
Sbjct: 1116 GREIVRQESADRPGDRSRLWNADYIRHVFINDTGTSAIEGIFLDMLNLK-FDANPNVFEK 1174

Query: 62   M-------------------------------LRYFHWHGCPLKSLPSNIHLEKLVLLEM 90
            M                               LR  HW   PL SLP + + E LV L +
Sbjct: 1175 MCNLRLLKLYCSKAEEKHGVSFPQGLEYLPSKLRLLHWEYYPLSSLPKSFNPENLVELNL 1234

Query: 91   PHSNIQQL 98
            P S  ++L
Sbjct: 1235 PSSCAKKL 1242

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 92/221 (41%), Gaps = 55/221 (24%)

Query: 1   MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSK---VKEIHLNPD 57
           +G EI R +S  + GKR +L + ED  + +T   G   + GI L   +    + + ++ +
Sbjct: 481 LGREIDRAKSKGNPGKRRFLTNFEDIHEVVTEKTGTETLLGIRLPFEEYFSTRPLLIDKE 540

Query: 58  TFRKM------------------------LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHS 93
           +F+ M                        LR   W  CPLKSLPS    E LV L M +S
Sbjct: 541 SFKGMRNLQYLEIGYYGDLPQSLVYLPLKLRLLDWDDCPLKSLPSTFKAEYLVNLIMKYS 600

Query: 94  NIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ-KNNFERIPE--SV 150
            +++L +   G L      PLG                SL +++L+  NN + IP+    
Sbjct: 601 KLEKLWE---GTL------PLG----------------SLKEMNLRYSNNLKEIPDLSLA 635

Query: 151 IQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESL 191
           I L +L  +  +    L S  +   KL  LD   C  LES 
Sbjct: 636 INLEELDLVGCKSLVTLPSSIQNATKLIYLDMSDCKKLESF 676

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|B5DX45|SUR8_DROPS Leucine-rich repeat protein soc-2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Sur-8 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 13/134 (9%)

Query: 81  HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK 140
            L  L +L +  + I++L  ++  ++  T       HL  L  PE+IG   +L  LDLQ 
Sbjct: 261 QLVNLTMLSLRENKIRELGSAIGALVNLTTLDVSHNHLEHL--PEDIGNCVNLSALDLQH 318

Query: 141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTA----------LES 190
           N    IP+S+  L  L RL LRY  RL S+P        +D  +             L S
Sbjct: 319 NELLDIPDSIGNLKSLVRLGLRY-NRLSSVPATLKNCKSMDEFNVEGNGMTQLPDGMLAS 377

Query: 191 LSGLFSSFEARTQY 204
           LSGL +   +R Q+
Sbjct: 378 LSGLTTITLSRNQF 391

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4IBI9|SUR8_DROSE Leucine-rich repeat protein soc-2 homolog OS=Drosophila sechellia GN=Sur-8 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 13/134 (9%)

Query: 81  HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK 140
            L  L +L +  + I++L  ++  ++  T       HL  L  PE+IG   +L  LDLQ 
Sbjct: 276 QLVNLTMLSLRENKIRELGSAIGALVNLTTLDVSHNHLEHL--PEDIGNCVNLSALDLQH 333

Query: 141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTA----------LES 190
           N    IP+S+  L  L RL +RY  RL S+P        +D  +             L S
Sbjct: 334 NELLDIPDSIGNLKSLVRLGMRY-NRLSSVPATLKNCKSMDEFNVEGNGITQLPDGMLAS 392

Query: 191 LSGLFSSFEARTQY 204
           LSGL +   +R Q+
Sbjct: 393 LSGLTTITLSRNQF 406

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila sechellia (taxid: 7238)

>sp|B3P3E8|SUR8_DROER Leucine-rich repeat protein soc-2 homolog OS=Drosophila erecta GN=Sur-8 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 123 LPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDA 182
           LPE+IG   +L  LDLQ N    IP+S+  L  L RL +RY  RL S+P        +D 
Sbjct: 316 LPEDIGNCVNLSALDLQHNELLDIPDSIGNLKSLVRLGMRY-NRLNSVPATLKNCKSMDE 374

Query: 183 HHCTA----------LESLSGLFSSFEARTQY 204
            +             L SLSGL +   +R Q+
Sbjct: 375 FNVEGNGITQLPDGMLASLSGLTTITLSRNQF 406

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila erecta (taxid: 7220)

>sp|B4PU77|SUR8_DROYA Leucine-rich repeat protein soc-2 homolog OS=Drosophila yakuba GN=Sur-8 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 123 LPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDA 182
           LPE+IG   +L  LDLQ N    IP+S+  L  L RL +RY  RL S+P        +D 
Sbjct: 317 LPEDIGNCVNLSALDLQHNELLDIPDSIGNLKSLVRLGMRY-NRLSSVPATLKNCKSMDE 375

Query: 183 HHCTA----------LESLSGLFSSFEARTQY 204
            +             L SLSGL +   +R Q+
Sbjct: 376 FNVEGNGITQLPDGMLASLSGLTTITLSRNQF 407

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila yakuba (taxid: 7245)

>sp|B4QVR7|SUR8_DROSI Leucine-rich repeat protein soc-2 homolog OS=Drosophila simulans GN=Sur-8 PE=3 SV=2

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 13/134 (9%)

Query: 81  HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK 140
            L  L +L +  + I++L  ++  ++  T       HL  L  PE+IG   +L  LDLQ 
Sbjct: 273 QLVNLTMLSLRENKIRELGSAIGALVNLTTLDVSHNHLEHL--PEDIGNCVNLSALDLQH 330

Query: 141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTA----------LES 190
           N    IP+S+  L  L RL +RY  RL S+P        +D  +             L S
Sbjct: 331 NELLDIPDSIGNLKSLVRLGMRY-NRLSSVPATLKNCKSMDEFNVEGNGITQLPDGMLAS 389

Query: 191 LSGLFSSFEARTQY 204
           LSGL +   +R Q+
Sbjct: 390 LSGLTTITLSRNQF 403

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila simulans (taxid: 7240)

>sp|Q9VEK6|SUR8_DROME Leucine-rich repeat protein soc-2 homolog OS=Drosophila melanogaster GN=Sur-8 PE=2 SV=3

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 123 LPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDA 182
           LPE+IG   +L  LDLQ N    IP+S+  L  L RL +RY  RL S+P        +D 
Sbjct: 313 LPEDIGNCVNLSALDLQHNELLDIPDSIGNLKSLVRLGMRY-NRLSSVPATLKNCKSMDE 371

Query: 183 HHCTA----------LESLSGLFSSFEARTQY 204
            +             L SLSGL +   +R Q+
Sbjct: 372 FNVEGNGITQLPDGMLASLSGLTTITLSRNQF 403

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
255573549	908	ATP binding protein, putative [Ricinus c	0.679	0.191	0.349	6e-24
359493489	1092	PREDICTED: TMV resistance protein N-like	0.667	0.156	0.364	6e-22
356554611	1114	PREDICTED: TMV resistance protein N-like	0.738	0.169	0.316	2e-19
357515077	1266	NBS-LRR resistance-like protein 4G [Medi	0.789	0.159	0.340	6e-19
357471111	1264	NBS-LRR resistance-like protein 4G [Medi	0.789	0.159	0.340	8e-19
255561520	465	conserved hypothetical protein [Ricinus	0.425	0.234	0.388	2e-18
105922468	581	NBS type disease resistance protein [Pop	0.679	0.299	0.331	3e-18
224145028	709	nbs-lrr resistance protein [Populus tric	0.792	0.286	0.300	1e-17
359493273	1233	PREDICTED: TMV resistance protein N-like	0.769	0.159	0.326	2e-17
356506541	913	PREDICTED: TMV resistance protein N-like	0.628	0.176	0.340	3e-17

>gi|255573549|ref|XP_002527699.1| ATP binding protein, putative [Ricinus communis] gi|223532930|gb|EEF34698.1| ATP binding protein, putative [Ricinus communis]

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 110/226 (48%), Gaps = 52/226 (23%)

Query: 1   MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFR 60
           MGWEIVRQES+ + G RS LW+HE+    LTSN G   + GI L +SK+ ++ L+ D+F 
Sbjct: 489 MGWEIVRQESIYEPGSRSRLWNHEEIYHVLTSNKGTGAVRGINLDLSKIHKLCLSSDSFT 548

Query: 61  KM----------------------------------LRYFHWHGCPLKSLPSNIHLEKLV 86
           +M                                  LR  HW   PL SLPSN    +LV
Sbjct: 549 RMGNLKFLKFYTPFSKYWEDDSKLYALEGLAYLPASLRLLHWDRYPLNSLPSNFEPRQLV 608

Query: 87  LLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFERI 146
            L + HS ++ L +  +                  +L  +  +LSSL  LDL+ NNF  I
Sbjct: 609 ELILCHSKLELLWEGAK------------------LLESSFSRLSSLEHLDLRGNNFSNI 650

Query: 147 PESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLS 192
           P  + QL  L  L +     L+SLP+LP  +  ++AH CT+LES+S
Sbjct: 651 PGDIRQLFHLKLLDISSCSNLRSLPELPSHIEYVNAHDCTSLESVS 696

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493489|ref|XP_002264004.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 106/217 (48%), Gaps = 46/217 (21%)

Query: 1   MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFR 60
           MGWEIVRQES+ D GKRS L  HED    LT+N G   +EG+   +S  KE++L+ D F 
Sbjct: 493 MGWEIVRQESIKDPGKRSRLRVHEDIHDVLTTNKGTEAVEGMVFDLSASKELNLSVDAFA 552

Query: 61  KM-----------------------LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQ 97
           KM                       LR  HWHG PLKSLPSN H EKLV L M +S ++Q
Sbjct: 553 KMNKLRLLRFYNLHLSRDFKFPSNNLRSLHWHGYPLKSLPSNFHPEKLVELNMCYSLLKQ 612

Query: 98  LLDSVRGI-------------LTRTPNTPLGQHLNTLVLP---------ENIGQLSSLGK 135
           L +  +               LT+TP+      L  ++L           +IG L  L  
Sbjct: 613 LWEGKKAFEKLKFIKLSHSQHLTKTPDFSAAPKLRRIILNGCTSLVKLHPSIGALKELIF 672

Query: 136 LDLQK-NNFERIPESVIQLSKLGRLCLRYWERLQSLP 171
           L+L+  +  E +P+S+ +L  L  L L    +L+ LP
Sbjct: 673 LNLEGCSKLENLPQSICELISLQTLTLSGCSKLKKLP 709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554611|ref|XP_003545638.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 113/243 (46%), Gaps = 54/243 (22%)

Query: 1   MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFR 60
           MG E+VR+ESM + G+RS LW  E+ I  LT+N G   +EGI L M+++  I+L+   FR
Sbjct: 565 MGREVVREESMKNPGQRSRLWDPEEVIDILTNNGGTDTVEGIWLDMTQISYINLSSKAFR 624

Query: 61  KM---------------------------------LRYFHWHGCPLKSLPSNIHLEKLVL 87
           KM                                 LRY  W+G PL+SLPS+   EKLV 
Sbjct: 625 KMPNMRLLAFQSPKGEFERINSVYLPKGLEFLPKNLRYLGWNGYPLESLPSSFCPEKLVE 684

Query: 88  LEMPHSNIQQLLDSVRGI-------------------LTRTPNTPLGQHLNTLVLPENIG 128
           L MP+SN+++L   V+ +                   L+  PN           LP    
Sbjct: 685 LSMPYSNLEKLWHGVQNLPNLERIDLHGSKHLMECPKLSHAPNLKYVSMRGCESLPYVDE 744

Query: 129 QLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTAL 188
            + SL KL++   N   +PES+  L KL  L +   ++LQ +P LP  L      +C +L
Sbjct: 745 SICSLPKLEIL--NVSGLPESIKDLPKLKVLEVGECKKLQHIPALPRSLQFFLVWNCQSL 802

Query: 189 ESL 191
           +++
Sbjct: 803 QTV 805

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515077|ref|XP_003627827.1| NBS-LRR resistance-like protein 4G [Medicago truncatula] gi|355521849|gb|AET02303.1| NBS-LRR resistance-like protein 4G [Medicago truncatula]

 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 117/241 (48%), Gaps = 39/241 (16%)

Query: 1   MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFR 60
           MG EIVRQES  D G+RS L+ HE+    L +N G   IEGI L +S++K+++L+ D F 
Sbjct: 495 MGREIVRQESTKDPGRRSRLYDHEEVYDVLKNNMGTSAIEGISLDVSQIKDMNLSSDIFV 554

Query: 61  KM------------------------------LRYFHWHGCPLKSLPSNIHLEKLVLLEM 90
           KM                              LRY HW   PLKSLPS+   EKLV L M
Sbjct: 555 KMINLRFLKFYSRSGERCSVSLPAGLKSFSNKLRYLHWSAYPLKSLPSSFSPEKLVELYM 614

Query: 91  PHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK-NNFERIPES 149
           P+S +++L + V+  LT      L    N + LP+     S+L  ++L +      +  S
Sbjct: 615 PNSRVKRLWEGVQD-LTNLKKMDLSCCENLIELPD-FSMASNLQTVNLSRCVRLRHVHAS 672

Query: 150 VIQLSKLGRLCLRYWERLQS-LPKLPCK-LHELDAHHCTALESLSGLFSSFEARTQYFDL 207
           ++ L KL  L L + + L+S L   P   L  L+ + C++L+     FS       Y DL
Sbjct: 673 ILSLQKLVNLNLVWCKNLKSLLSNTPLNSLRILELYGCSSLKE----FSVTSEEMTYLDL 728

Query: 208 R 208
           R
Sbjct: 729 R 729

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357471111|ref|XP_003605840.1| NBS-LRR resistance-like protein 4G [Medicago truncatula] gi|355506895|gb|AES88037.1| NBS-LRR resistance-like protein 4G [Medicago truncatula]

 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 117/241 (48%), Gaps = 39/241 (16%)

Query: 1   MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFR 60
           MG EIVRQES  D G+RS L+ HE+    L +N G   IEGI L +S++K+++L+ D F 
Sbjct: 495 MGREIVRQESTKDPGRRSRLYDHEEVYDVLKNNMGTSAIEGISLDVSQIKDMNLSSDIFV 554

Query: 61  KM------------------------------LRYFHWHGCPLKSLPSNIHLEKLVLLEM 90
           KM                              LRY HW   PLKSLPS+   EKLV L M
Sbjct: 555 KMINLRFLKFYSRSGERCSVSLPAGLKSFSNKLRYLHWSAYPLKSLPSSFSPEKLVELYM 614

Query: 91  PHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK-NNFERIPES 149
           P+S +++L + V+  LT      L    N + LP+     S+L  ++L +      +  S
Sbjct: 615 PNSRVKRLWEGVQD-LTNLKKMDLSCCENLIELPD-FSMASNLQTVNLSRCVRLRHVHAS 672

Query: 150 VIQLSKLGRLCLRYWERLQS-LPKLPCK-LHELDAHHCTALESLSGLFSSFEARTQYFDL 207
           ++ L KL  L L + + L+S L   P   L  L+ + C++L+     FS       Y DL
Sbjct: 673 ILSLQKLVNLNLVWCKNLKSLLSNTPLNSLRILELYGCSSLKE----FSVTSEEMTYLDL 728

Query: 208 R 208
           R
Sbjct: 729 R 729

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561520|ref|XP_002521770.1| conserved hypothetical protein [Ricinus communis] gi|223538983|gb|EEF40580.1| conserved hypothetical protein [Ricinus communis]

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 72/144 (50%), Gaps = 35/144 (24%)

Query: 1   MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFR 60
           MGWE V+QES  + G+RS LWHHED    LT N G   +EGI L +S+ +E+HL  + F+
Sbjct: 303 MGWETVQQESTGEPGERSRLWHHEDIYHVLTKNTGTKAVEGITLDLSETRELHLTSEAFK 362

Query: 61  KM--------------------------------LRYFHWHGCPLKSLPSNIHLEKLVLL 88
           KM                                LRY HW+  P KSLP N   E LV L
Sbjct: 363 KMYNLRLLKFHDSDFEDFCKVHFPDEGLSFHSNKLRYLHWYKYPSKSLPYNFSPENLVEL 422

Query: 89  EMPHSNIQQLLDSVRGILTRTPNT 112
            +P SN++QL    +G+  RT  T
Sbjct: 423 NLPRSNVEQLW---QGVQNRTKGT 443

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922468|gb|ABF81418.1| NBS type disease resistance protein [Populus trichocarpa]

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 96/208 (46%), Gaps = 34/208 (16%)

Query: 1   MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFR 60
           M +EIVRQES+ +LGKRS LW   D  + LT N G   +EGI    SK+KEI L+   F 
Sbjct: 275 MAFEIVRQESIKELGKRSRLWSPRDVNQVLTKNLGTEKVEGIFFDTSKIKEIKLSSKAFA 334

Query: 61  KM-------------------------------LRYFHWHGCPLKSLPSNIHLEKLVLLE 89
           +M                               LRY HW G PLKSLPSN H E LV L 
Sbjct: 335 RMYNLRLLKIYNSEVGKNCKVYLPHGLKSLSDELRYLHWDGYPLKSLPSNFHPENLVELN 394

Query: 90  MPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLV--LPENIGQLSSLGKLDLQK-NNFERI 146
           + HS +++L    +     T +        T +  LP++IG  S L  L+L++      +
Sbjct: 395 LSHSKVRELWKGDQMYPETTEHVMYLNFNETAIKELPQSIGHRSRLVALNLRECKQLGNL 454

Query: 147 PESVIQLSKLGRLCLRYWERLQSLPKLP 174
           PES+  L  +  + +     +   P +P
Sbjct: 455 PESICLLKSIVIVDVSGCSNVTKFPNIP 482

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145028|ref|XP_002325500.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222862375|gb|EEE99881.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 112/256 (43%), Gaps = 53/256 (20%)

Query: 1   MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFR 60
           M +EIVRQES+ +LGKRS LW   D  + LT N G   +EGI    SK+KEI L+   F 
Sbjct: 275 MAFEIVRQESIKELGKRSRLWSPRDVNQVLTKNLGTEKVEGIFFDTSKIKEIKLSSKAFA 334

Query: 61  KM-------------------------------LRYFHWHGCPLKSLPSNIHLEKLVLLE 89
           +M                               LRY HW G PLKSLPSN H E LV L 
Sbjct: 335 RMYNLRLLKIYNSEVGKNCKVYLPHGLKSLSDELRYLHWDGYPLKSLPSNFHPENLVELN 394

Query: 90  MPHSNIQQLLDSVRGILTRTPNTP-----LGQHLNTLVLPENIGQLSSLG---------- 134
           + HS +++L    +   ++            + LN  +   N+   S+L           
Sbjct: 395 LSHSKVRELWKGDQVWFSQYTYAAQAFRVFQESLNRKISALNLSGCSNLKMYPETTEHVM 454

Query: 135 KLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHEL---DAHHCTALESL 191
            L+  +   + +P+S+   S+L  L LR  ++L +LP+  C L  +   D   C+ +   
Sbjct: 455 YLNFNETAIKELPQSIGHRSRLVALNLRECKQLGNLPESICLLKSIVIVDVSGCSNVTK- 513

Query: 192 SGLFSSFEARTQYFDL 207
              F +    T+Y  L
Sbjct: 514 ---FPNIPGNTRYLYL 526

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493273|ref|XP_002272034.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 102/236 (43%), Gaps = 39/236 (16%)

Query: 1   MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFR 60
           MGWEIVRQE   D GK S LW +E     L  N G   IEGI L M + KEI    + F 
Sbjct: 494 MGWEIVRQECPKDPGKWSRLWDYEHIYSVLKKNTGTETIEGIFLDMYRSKEIQFTTEAFA 553

Query: 61  KM---------------------------------LRYFHWHGCPLKSLPSNIHLEKLVL 87
           KM                                 LRY +WHG P  SLPS  H E L+ 
Sbjct: 554 KMNRLRLLKVFNFSGIGKEGYKEPLSVSFEFPSYELRYLYWHGYPFGSLPSKFHSENLIE 613

Query: 88  LEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK-NNFERI 146
           L M +S +++L      +L       L    + + LP N   + +L +L L+       +
Sbjct: 614 LNMCYSYMRELWKG-NEVLDNLNTIELSNSQHLIHLP-NFSSMPNLERLVLEGCTTISEL 671

Query: 147 PESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDA---HHCTALESLSGLFSSFE 199
           P S+  L+ L  L L   +RL+SLP   CKL  L+      C+ LES   +  + E
Sbjct: 672 PFSIGYLTGLILLDLENCKRLKSLPSSICKLKSLETLILSACSKLESFPEIMENME 727

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506541|ref|XP_003522038.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 92/191 (48%), Gaps = 30/191 (15%)

Query: 1   MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFR 60
           MGWEIVRQES+ D G RS LW  +D  + L +N G   I  I   +S ++E+ L+PDTF 
Sbjct: 547 MGWEIVRQESIEDPGSRSRLWDADDIYEVLKNNKGTESIRSIRADLSAIRELKLSPDTFT 606

Query: 61  KM---------------------------LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHS 93
           KM                           LRYF W   PLKSLP N   + LVLL++ +S
Sbjct: 607 KMSKLQFLYFPHQGCVDNFPHRLQSFSVELRYFVWRYFPLKSLPENFSAKNLVLLDLSYS 666

Query: 94  NIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK-NNFERIPESVIQ 152
            +++L D V+  L       +    N   LP N+ + ++L  LD+        +  S+  
Sbjct: 667 RVEKLWDGVQN-LKNLKEVKVSGSKNLKELP-NLSEATNLEVLDISACPQLASVIPSIFS 724

Query: 153 LSKLGRLCLRY 163
           L+KL  + L Y
Sbjct: 725 LNKLKIMKLNY 735

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.277	0.054	0.444	4.4e-14
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.246	0.051	0.523	1.5e-10
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.238	0.053	0.555	1.6e-10
TAIR|locus:2133742	1039	AT4G09430 [Arabidopsis thalian	0.214	0.052	0.454	2e-10
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.484	0.104	0.358	2.5e-09
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.246	0.045	0.428	9.1e-09
TAIR|locus:2205804	1556	AT1G27180 [Arabidopsis thalian	0.246	0.040	0.428	2.4e-08
TAIR|locus:2115870	1234	AT4G08450 [Arabidopsis thalian	0.234	0.048	0.4	6.3e-08
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.464	0.096	0.353	7.2e-08
UNIPROTKB|Q5F4C4	529	SHOC2 "Leucine-rich repeat pro	0.625	0.302	0.283	1.8e-07

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
 Identities = 32/72 (44%), Positives = 47/72 (65%)

Query:   117 HLNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLP-KLPC 175
             ++N   +P +IG L +L +LDL  NNFE IP S+ +L++L RL L   +RLQ+LP +LP 
Sbjct:   964 NMNMTEIPNSIGNLWNLLELDLSGNNFEFIPASIKRLTRLNRLNLNNCQRLQALPDELPR 1023

Query:   176 KLHELDAHHCTA 187
              L  +  H CT+
Sbjct:  1024 GLLYIYIHSCTS 1035

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 33/63 (52%), Positives = 40/63 (63%)

Query:   123 LPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDA 182
             LP+NIG LSSL  L L  NN E +PES  QL+ L    L++ + L+SLP LP  L  LDA
Sbjct:   870 LPDNIGGLSSLQSLCLSGNNIENLPESFNQLNNLKWFDLKFCKMLKSLPVLPQNLQYLDA 929

Query:   183 HHC 185
             H C
Sbjct:   930 HEC 932

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 158 (60.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
 Identities = 35/63 (55%), Positives = 43/63 (68%)

Query:   123 LPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHEL-- 180
             LPE IG LSSL KLDL +NNFE +P S+ QL  L  L L+  +RL  LP+LP +L+EL  
Sbjct:   850 LPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELHV 909

Query:   181 DAH 183
             D H
Sbjct:   910 DCH 912

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2133742 AT4G09430 [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
 Identities = 25/55 (45%), Positives = 36/55 (65%)

Query:   131 SSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHC 185
             +SL  LDL  ++FERIP S+  LS L  LCL+  ++L+ + +LP  L+ L AH C
Sbjct:   872 TSLAYLDLSNHDFERIPTSIRHLSSLNTLCLKNCKKLKYVEELPLSLNHLYAHGC 926

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
 Identities = 48/134 (35%), Positives = 65/134 (48%)

Query:    56 PDTFR--KMLRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLD-SVRGILTRTPNT 112
             P T    K L+    +GC  K L S+  ++ L   E  HS +  L   S+ G LT     
Sbjct:   735 PSTINQLKKLKRLSLNGC--KGLLSD-DIDNLYS-EKSHS-VSLLRPVSLSG-LTYMRIL 788

Query:   113 PLGQ-HLNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLP 171
              LG  +L+  ++PE+IG LS L  LDL+ N+F  +P     L  LG L L    +LQS+ 
Sbjct:   789 SLGYCNLSDELIPEDIGSLSFLRDLDLRGNSFCNLPTDFATLPNLGELLLSDCSKLQSIL 848

Query:   172 KLPCKLHELDAHHC 185
              LP  L  LD   C
Sbjct:   849 SLPRSLLFLDVGKC 862

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query:   123 LPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDA 182
             +P+++ +LS L KL+L  N F  +P S+++LS L  L LR    L+ LP LPCKL +L+ 
Sbjct:  1078 IPDDLEKLSCLMKLNLGNNYFHSLPSSLVKLSNLQELSLRDCRELKRLPPLPCKLEQLNL 1137

Query:   183 HHC 185
              +C
Sbjct:  1138 ANC 1140

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query:   123 LPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDA 182
             +P+++ +LS L KL+L  N F  +P S+++LS L  L LR    L+ LP LPCKL +L+ 
Sbjct:  1252 IPDDLEKLSCLMKLNLGNNYFHSLPSSLVKLSNLQELSLRDCRELKRLPPLPCKLEQLNL 1311

Query:   183 HHC 185
              +C
Sbjct:  1312 ANC 1314

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2115870 AT4G08450 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
 Identities = 24/60 (40%), Positives = 37/60 (61%)

Query:     4 EIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFRKML 63
             EI+R +S +D GKR +L   +D    L + +G   + GI L M +++E+HL  D F+KML
Sbjct:   497 EIIRAQSFDDPGKREFLVDGKDIADVLDNCSGTRKVLGISLDMDEIEELHLQVDAFKKML 556

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 7.2e-08, P = 7.2e-08
 Identities = 46/130 (35%), Positives = 66/130 (50%)

Query:    63 LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVR--GILTRTPNTPLGQHLNT 120
             L +  W  CPLKSLPSN   E LV L M HS +++L +  +  G L    +  L + L  
Sbjct:   741 LTHLRWDFCPLKSLPSNFRQEHLVSLHMTHSKLEKLWEGAQPFGNLVNI-DLSLSEKLKE 799

Query:   121 LVLPENIGQLSSLGKLDLQK-NNFERIPESVIQLSKLGRLCLRYWERLQSLP---KLPCK 176
                P N+ ++++L  LDL    +   +P S+  LSKL  L +R    L++LP    L   
Sbjct:   800 F--P-NLSKVTNLDTLDLYGCKSLVTVPSSIQSLSKLTELNMRRCTGLEALPTDVNLE-S 855

Query:   177 LHELDAHHCT 186
             LH LD   C+
Sbjct:   856 LHTLDLSGCS 865

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|Q5F4C4 SHOC2 "Leucine-rich repeat protein SHOC-2" [Gallus gallus (taxid:9031)]

 Score = 143 (55.4 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 47/166 (28%), Positives = 83/166 (50%)

Query:     9 ESMNDLGKRSWLWHHEDSIKFLTSNAGRIL-IEGICLGMSKVKEIHLNPDTFRKMLRYFH 67
             +S+++L K   L    + ++ + S   R+  +  + L  +++  +  +  T  K L    
Sbjct:   163 DSLDNLKKLRMLDLRHNKLREIPSVVYRLTSLATLYLRFNRITTVEKDIKTLSK-LTMLS 221

Query:    68 WHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPEN 126
                  +K LP+ I  L  L+ L++ H+ ++ L + + G  T+  N  L QH   L LPE 
Sbjct:   222 IRENKIKQLPAEIGELCNLITLDVAHNQLEHLPEEI-GSCTQITNLDL-QHNELLDLPET 279

Query:   127 IGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPK 172
             IG LSSL +L L+ N    IP+S+ + S+L  L L     + +LP+
Sbjct:   280 IGNLSSLSRLGLRYNRLSAIPKSLAKCSELDELNLEN-NNISTLPE 324

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=ISS

GO:0019903 "protein phosphatase binding" evidence=ISS

GO:0000164 "protein phosphatase type 1 complex" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	256
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-17
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-04

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 81.1 bits (200), Expect = 2e-17
 Identities = 69/247 (27%), Positives = 103/247 (41%), Gaps = 59/247 (23%)

Query: 1   MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFR 60
           MG EIVR +S N+ G+R +L   +D    L  N G   + GI L + ++ E+H++ + F+
Sbjct: 497 MGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFK 555

Query: 61  KM---------------------------------LRYFHWHGCPLKSLPSNIHLEKLVL 87
            M                                 LR   W   PL+ +PSN   E LV 
Sbjct: 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVK 615

Query: 88  LEMPHSNIQQLLDSVRGI-------------LTRTPNTPLGQHLNTLV---------LPE 125
           L+M  S +++L D V  +             L   P+  +  +L TL          LP 
Sbjct: 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPS 675

Query: 126 NIGQLSSLGKLDLQK-NNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHH 184
           +I  L+ L  LD+ +  N E +P + I L  L RL L    RL+S P +   +  LD   
Sbjct: 676 SIQYLNKLEDLDMSRCENLEILP-TGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE 734

Query: 185 CTALESL 191
            TA+E  
Sbjct: 735 -TAIEEF 740

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 33/165 (20%)

Query: 73  LKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSS 132
           ++  PSN+ LE L  L +     ++L + V+      P TP    L T++ P       S
Sbjct: 737 IEEFPSNLRLENLDELILCEMKSEKLWERVQ------PLTP----LMTMLSP-------S 779

Query: 133 LGKLDLQKN-NFERIPESVIQLSKLGRLCLRYWERLQSLP---KLPCKLHELDAHHCTAL 188
           L +L L    +   +P S+  L KL  L +     L++LP    L   L  LD   C+ L
Sbjct: 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLE-SLESLDLSGCSRL 838

Query: 189 ESLSGLFSSFEARTQYFDLRILEDALQETQLLEAALWKEILVCLC 233
            +   +       T   DL      L  T + E   W E    L 
Sbjct: 839 RTFPDI------STNISDLN-----LSRTGIEEVPWWIEKFSNLS 872

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.52
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.46
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.43
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.38
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.32
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.2
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.19
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.1
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.06
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.95
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.93
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.86
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.79
PLN03150	623	hypothetical protein; Provisional	98.78
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.65
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.6
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.58
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.54
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.46
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.43
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.42
PLN03150	623	hypothetical protein; Provisional	98.41
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.3
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.25
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.19
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.09
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.01
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.01
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.0
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.74
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.7
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.65
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.56
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.51
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.47
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.36
PRK15386	426	type III secretion protein GogB; Provisional	97.23
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.2
PRK15386	426	type III secretion protein GogB; Provisional	97.01
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.83
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.79
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.57
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.5
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.4
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.08
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.85
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.22
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.13
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.02
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.93
smart00370	26	LRR Leucine-rich repeats, outliers.	93.93
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	93.79
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.74
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	93.67
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.75
KOG2982	418	consensus Uncharacterized conserved protein [Funct	92.66
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	92.29
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.41
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.31
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.57
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	85.02
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	81.37

>PLN03210 Resistant to P

Probab=99.83  E-value=1.1e-20  Score=191.89  Aligned_cols=190  Identities=33%  Similarity=0.544  Sum_probs=133.1

Q ss_pred             ChhhhhhhhcccCCCCccccCCcccHHHHHhhccccCccceeEeeCCCCeeeecChHHHHhh------------------
Q 043683            1 MGWEIVRQESMNDLGKRSWLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFRKM------------------   62 (256)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~l~~l~~~~l~~~~f~~l------------------   62 (256)
                      |||+||++++ .+||+|+|+|.++|++++++.++++..++++.+|++....+.+..++|.+|                  
T Consensus       497 ~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~  575 (1153)
T PLN03210        497 MGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKE  575 (1153)
T ss_pred             HHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccccc
Confidence            8999999998 699999999999999999999999999999999998888888888888777                  


Q ss_pred             ---------------hhhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc--cCcccccc
Q 043683           63 ---------------LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH--LNTLVLPE  125 (256)
Q Consensus        63 ---------------L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~--L~~L~lp~  125 (256)
                                     |+.|++.+|++..+|..+.+.+|++|++++|+++.+|.+...+ ..+..+.+.++  ++  .+| 
T Consensus       576 ~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l-~~Lk~L~Ls~~~~l~--~ip-  651 (1153)
T PLN03210        576 VRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSL-TGLRNIDLRGSKNLK--EIP-  651 (1153)
T ss_pred             ceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccC-CCCCEEECCCCCCcC--cCC-
Confidence                           3444555666777777777788888899888888775443331 11111111111  11  123 


Q ss_pred             ccCCCCCCcEEEcc-CCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccch
Q 043683          126 NIGQLSSLGKLDLQ-KNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLF  195 (256)
Q Consensus       126 ~~~~l~~L~~L~l~-~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~  195 (256)
                      .++.+++|++|+++ |+.+..+|..++.+++|+.|++++|+.++.+|..  +++|++|++++|..+..+|...
T Consensus       652 ~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~  724 (1153)
T PLN03210        652 DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIS  724 (1153)
T ss_pred             ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccccc
Confidence            24556667777766 3445566666666677777777666666666654  5666666666666665555443

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.52  E-value=2.4e-15  Score=138.85  Aligned_cols=179  Identities=19%  Similarity=0.344  Sum_probs=115.0

Q ss_pred             eCCCCeeeecChHHHHhh---------hhhhhccCCCCCccCCcc--ccCCccEEeCcCCcchhhHHHHHHh--------
Q 043683           45 GMSKVKEIHLNPDTFRKM---------LRYFHWHGCPLKSLPSNI--HLEKLVLLEMPHSNIQQLLDSVRGI--------  105 (256)
Q Consensus        45 ~l~~l~~~~l~~~~f~~l---------L~~L~ls~n~l~~lp~~~--~l~~L~~L~L~~n~l~~l~~~L~~L--------  105 (256)
                      .+..+.+++++.+.++..         +-+|++|+|+|..+|..+  +++.|-+||||+|++..+++.++.|        
T Consensus       101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~L  180 (1255)
T KOG0444|consen  101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKL  180 (1255)
T ss_pred             ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhc
Confidence            344444555555555444         455666666666666653  6666667777777666665554443        


Q ss_pred             ---------cccCCCCc------hhhccCcc-ccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcc
Q 043683          106 ---------LTRTPNTP------LGQHLNTL-VLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQS  169 (256)
Q Consensus       106 ---------l~~lp~~~------l~~~L~~L-~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~  169 (256)
                               +..+|...      +++-=+.+ .+|.++..+.+|..+|+|+|++..+|+.+.++.+|+.|++|+ |.+..
T Consensus       181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~-N~ite  259 (1255)
T KOG0444|consen  181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG-NKITE  259 (1255)
T ss_pred             CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc-Cceee
Confidence                     22233210      00001111 678888999999999999999999999999999999999998 55666


Q ss_pred             cCCC---CCCCcEEeccCcccccccccchhchhhhhhcc------CCcccHHHHHHhHHHHHhhh
Q 043683          170 LPKL---PCKLHELDAHHCTALESLSGLFSSFEARTQYF------DLRILEDALQETQLLEAALW  225 (256)
Q Consensus       170 lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l~------~l~~~~~~~~~~~~~~~~~~  225 (256)
                      +...   ..+|+.|+++.| .+..+|..+..++.++.|.      .+..+|++|.++..++....
T Consensus       260 L~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a  323 (1255)
T KOG0444|consen  260 LNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA  323 (1255)
T ss_pred             eeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence            6543   567777888774 4677777777777776553      33556777776665554433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.46  E-value=7.5e-14  Score=140.22  Aligned_cols=189  Identities=19%  Similarity=0.277  Sum_probs=92.8

Q ss_pred             cccCCCCccccCCc-ccHHHHHhhccc--cCccceeEeeCCCCeeeecChHHHHhh--hhhhhccCCCCC-ccCCcc--c
Q 043683           10 SMNDLGKRSWLWHH-EDSIKFLTSNAG--RILIEGICLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLK-SLPSNI--H   81 (256)
Q Consensus        10 ~~~~~~~~~~l~~~-~~~~~~l~~~~~--~~~~~~~~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~-~lp~~~--~   81 (256)
                      +..+|+++.+.|.. .+.+.+ .+..-  ...+..  +|++........+..|..+  |++|++++|.+. .+|..+  .
T Consensus        40 ~~~~~~~~~~~w~~~~~~c~w-~gv~c~~~~~v~~--L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~  116 (968)
T PLN00113         40 SINDPLKYLSNWNSSADVCLW-QGITCNNSSRVVS--IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTT  116 (968)
T ss_pred             hCCCCcccCCCCCCCCCCCcC-cceecCCCCcEEE--EEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhcc
Confidence            33468888888965 444443 22221  233443  4444443333334556666  777777777754 677664  6


Q ss_pred             cCCccEEeCcCCcchhh-----HHHHHHh------c-ccCCCCchhhc--cCcc---------ccccccCCCCCCcEEEc
Q 043683           82 LEKLVLLEMPHSNIQQL-----LDSVRGI------L-TRTPNTPLGQH--LNTL---------VLPENIGQLSSLGKLDL  138 (256)
Q Consensus        82 l~~L~~L~L~~n~l~~l-----~~~L~~L------l-~~lp~~~l~~~--L~~L---------~lp~~~~~l~~L~~L~l  138 (256)
                      +++|++|++++|.+.+.     +++|+.|      + +.+|.. ++.+  |+.|         .+|..++++++|++|++
T Consensus       117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  195 (968)
T PLN00113        117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL  195 (968)
T ss_pred             CCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence            77777777777766532     1222222      0 011110 1111  2222         23444555555555555


Q ss_pred             cCCCCc-cccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhhhh
Q 043683          139 QKNNFE-RIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEART  202 (256)
Q Consensus       139 ~~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~  202 (256)
                      ++|.+. .+|+.++.+++|+.|++++|...+.+|..   +++|++|++++|...+.+|..++++++++
T Consensus       196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  263 (968)
T PLN00113        196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ  263 (968)
T ss_pred             cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence            555544 34455555555555555554433344432   44555555555444344444444444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.43  E-value=1.6e-14  Score=114.60  Aligned_cols=147  Identities=24%  Similarity=0.394  Sum_probs=101.6

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCcc-ccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTL-VLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L-~lp~~~~~l~~L~~L~l~~  140 (256)
                      ++.|.+|+|+++.+|+.| .+.+|+.|++++|++++++.++.++ ..+..+.++  +..| .+|..||.++.|+.||+++
T Consensus        35 ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl-~klr~lnvg--mnrl~~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   35 ITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSL-PKLRILNVG--MNRLNILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhc-hhhhheecc--hhhhhcCccccCCCchhhhhhccc
Confidence            777888888888888888 8888888888888888875554442 000000000  0111 3488888888899999888


Q ss_pred             CCCc--cccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhhhhhcc----CCcccH
Q 043683          141 NNFE--RIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTQYF----DLRILE  211 (256)
Q Consensus       141 n~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l~----~l~~~~  211 (256)
                      |++.  .+|..|..++.|+.|++++ +.+..+|..   +++|+.|.+..+. +-++|..++.++.+.++.    .+..+|
T Consensus       112 nnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnrl~vlp  189 (264)
T KOG0617|consen  112 NNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNRLTVLP  189 (264)
T ss_pred             cccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccceeeecC
Confidence            8876  6787777788888888887 556677765   7778888887765 556788888777777553    344444


Q ss_pred             HHH
Q 043683          212 DAL  214 (256)
Q Consensus       212 ~~~  214 (256)
                      ..+
T Consensus       190 pel  192 (264)
T KOG0617|consen  190 PEL  192 (264)
T ss_pred             hhh
Confidence            443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.38  E-value=9.5e-14  Score=128.45  Aligned_cols=182  Identities=21%  Similarity=0.333  Sum_probs=122.0

Q ss_pred             ceeEeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh----HHHHHHh-------
Q 043683           40 EGICLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL----LDSVRGI-------  105 (256)
Q Consensus        40 ~~~~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l----~~~L~~L-------  105 (256)
                      -.++++++.+.+-.+...-|-++  |-+||+|+|.+..+|+.+ .+.+|+.|.|++|.+...    ++.+++|       
T Consensus       127 n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~  206 (1255)
T KOG0444|consen  127 NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN  206 (1255)
T ss_pred             CcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence            34678999998888888889888  999999999999999999 999999999999987644    3333333       


Q ss_pred             ----cccCCCCchhhc--cCcc--------ccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccC
Q 043683          106 ----LTRTPNTPLGQH--LNTL--------VLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLP  171 (256)
Q Consensus       106 ----l~~lp~~~l~~~--L~~L--------~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp  171 (256)
                          +.++|.. +..+  |..+        .+|+.+-++.+|+.|+||+|+++.+...++.-.+|+.|++|. |.+..+|
T Consensus       207 TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP  284 (1255)
T KOG0444|consen  207 TQRTLDNIPTS-LDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSR-NQLTVLP  284 (1255)
T ss_pred             ccchhhcCCCc-hhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhcccc-chhccch
Confidence                3344431 1111  1111        446777777777777777777777766666667777777776 4566777


Q ss_pred             CC---CCCCcEEeccCccc-ccccccchhchhhhhhc----cCCcccHHHHHHhHHHHHh
Q 043683          172 KL---PCKLHELDAHHCTA-LESLSGLFSSFEARTQY----FDLRILEDALQETQLLEAA  223 (256)
Q Consensus       172 ~~---l~~L~~L~l~~~~~-l~~~p~~~~~l~~l~~l----~~l~~~~~~~~~~~~~~~~  223 (256)
                      +.   ++.|+.|++.+|.. .+-+|++++.+..++.+    +++...|+++..+..+...
T Consensus       285 ~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL  344 (1255)
T KOG0444|consen  285 DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKL  344 (1255)
T ss_pred             HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHh
Confidence            65   56666666655432 34566666666666543    2445555555555444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.32  E-value=1.6e-12  Score=130.72  Aligned_cols=80  Identities=30%  Similarity=0.338  Sum_probs=38.8

Q ss_pred             cccccCCCCCCcEEEccCCCCc-cccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhch
Q 043683          123 LPENIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSF  198 (256)
Q Consensus       123 lp~~~~~l~~L~~L~l~~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l  198 (256)
                      +|..++.+++|++|++++|+++ .+|..++++++|+.|++++|...+.+|..   +++|++|++++|.....+|..+.++
T Consensus       228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  307 (968)
T PLN00113        228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL  307 (968)
T ss_pred             CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence            4445555555555555555554 44455555555555555544433344432   4455555555544444444444444


Q ss_pred             hhhh
Q 043683          199 EART  202 (256)
Q Consensus       199 ~~l~  202 (256)
                      ++++
T Consensus       308 ~~L~  311 (968)
T PLN00113        308 QNLE  311 (968)
T ss_pred             CCCc
Confidence            4333

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.20  E-value=1.8e-12  Score=114.58  Aligned_cols=157  Identities=25%  Similarity=0.334  Sum_probs=113.4

Q ss_pred             eeCCCCeeeecChHHHHhh-hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh------HHHHHHh------cccC
Q 043683           44 LGMSKVKEIHLNPDTFRKM-LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL------LDSVRGI------LTRT  109 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l-L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l------~~~L~~L------l~~l  109 (256)
                      ++++..+..++.+..++-. +..++..+|++..+|+++ .+.+|..+++.+|+++.+      |+.++++      ++.+
T Consensus       119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tl  198 (565)
T KOG0472|consen  119 LDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETL  198 (565)
T ss_pred             hhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcC
Confidence            4555555555555544433 777777788888888877 778888888888887766      4444444      4555


Q ss_pred             CCCchhhc--cCcc--------ccccccCCCCCCcEEEccCCCCcccccccc-CCCCCCEEeeccCcCCcccCCC---CC
Q 043683          110 PNTPLGQH--LNTL--------VLPENIGQLSSLGKLDLQKNNFERIPESVI-QLSKLGRLCLRYWERLQSLPKL---PC  175 (256)
Q Consensus       110 p~~~l~~~--L~~L--------~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~-~l~~L~~L~l~~~~~l~~lp~~---l~  175 (256)
                      |.- ++..  |.-|        .+| +|+++..|.+++++.|+++-+|++++ ++.++..||+.+ ++++++|+.   +.
T Consensus       199 P~~-lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLr  275 (565)
T KOG0472|consen  199 PPE-LGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLR  275 (565)
T ss_pred             Chh-hcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhh
Confidence            532 2222  1111        556 78888888888888888888897765 899999999998 779999997   78


Q ss_pred             CCcEEeccCcccccccccchhchhhhhhcc
Q 043683          176 KLHELDAHHCTALESLSGLFSSFEARTQYF  205 (256)
Q Consensus       176 ~L~~L~l~~~~~l~~~p~~~~~l~~l~~l~  205 (256)
                      +|.+||+++|. +..+|..++++ .+..+.
T Consensus       276 sL~rLDlSNN~-is~Lp~sLgnl-hL~~L~  303 (565)
T KOG0472|consen  276 SLERLDLSNND-ISSLPYSLGNL-HLKFLA  303 (565)
T ss_pred             hhhhhcccCCc-cccCCcccccc-eeeehh
Confidence            99999999854 88899999998 566543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.19  E-value=1.3e-12  Score=120.16  Aligned_cols=158  Identities=20%  Similarity=0.253  Sum_probs=102.6

Q ss_pred             ccccCccceeEeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc--ccCCccEEeCcCCcchhh----HHHHHH
Q 043683           33 NAGRILIEGICLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI--HLEKLVLLEMPHSNIQQL----LDSVRG  104 (256)
Q Consensus        33 ~~~~~~~~~~~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~--~l~~L~~L~L~~n~l~~l----~~~L~~  104 (256)
                      +.+..++.-..++++.+++..+....|.++  |..|.|+.|.++.+|...  .|++|+.|+|..|+|+.+    |.+|.+
T Consensus       167 ~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~S  246 (873)
T KOG4194|consen  167 PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPS  246 (873)
T ss_pred             CCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchh
Confidence            334444444567778888888888888887  888999999999999764  699999999999988755    444333


Q ss_pred             ---h------cccCCCCchhhc-----------------------cCcc------------ccccccCCCCCCcEEEccC
Q 043683          105 ---I------LTRTPNTPLGQH-----------------------LNTL------------VLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus       105 ---L------l~~lp~~~l~~~-----------------------L~~L------------~lp~~~~~l~~L~~L~l~~  140 (256)
                         |      +..+.+-.+..+                       |++|            .=++++...++|++|+|+.
T Consensus       247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~  326 (873)
T KOG4194|consen  247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS  326 (873)
T ss_pred             hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc
Confidence               3      222332111111                       2222            1245556667777777777


Q ss_pred             CCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccccccc
Q 043683          141 NNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESL  191 (256)
Q Consensus       141 n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~  191 (256)
                      |+++++++ .+..|..|++|++++ |.+..+.+.    +++|+.||++.|..-..+
T Consensus       327 N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I  381 (873)
T KOG4194|consen  327 NRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCI  381 (873)
T ss_pred             cccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence            77777764 566777777777776 445555544    667777777766543333

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.10  E-value=2.1e-12  Score=102.56  Aligned_cols=148  Identities=28%  Similarity=0.375  Sum_probs=106.5

Q ss_pred             CCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCc---hhhc-cC
Q 043683           47 SKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTP---LGQH-LN  119 (256)
Q Consensus        47 ~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~---l~~~-L~  119 (256)
                      +.++...+.++ ...+  |++|++++|+++++|..+ .+++|+.|++..|++..++.+.    +.+|.+.   +... |.
T Consensus        41 SHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf----gs~p~levldltynnl~  115 (264)
T KOG0617|consen   41 SHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF----GSFPALEVLDLTYNNLN  115 (264)
T ss_pred             ccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc----CCCchhhhhhccccccc
Confidence            33333334333 3444  899999999999999999 8999999999988876542111    1122111   1111 22


Q ss_pred             ccccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchh
Q 043683          120 TLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFS  196 (256)
Q Consensus       120 ~L~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~  196 (256)
                      +=.+|..|..++.|+-|+++.|.|+-+|++++++++|+.|.+.+ +.+-++|..   ++.|+.|.++++ .+..+|..++
T Consensus       116 e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgn-rl~vlppel~  193 (264)
T KOG0617|consen  116 ENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGN-RLTVLPPELA  193 (264)
T ss_pred             cccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccc-eeeecChhhh
Confidence            22568888888888889999999999999999999999999988 446678876   888899999985 5888998888


Q ss_pred             chhhh
Q 043683          197 SFEAR  201 (256)
Q Consensus       197 ~l~~l  201 (256)
                      ++.-+
T Consensus       194 ~l~l~  198 (264)
T KOG0617|consen  194 NLDLV  198 (264)
T ss_pred             hhhhh
Confidence            76543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.06  E-value=8.2e-11  Score=108.45  Aligned_cols=156  Identities=21%  Similarity=0.304  Sum_probs=96.5

Q ss_pred             eEeeCCCCeeeecChHHHHhh----------hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh----HHHHHHh
Q 043683           42 ICLGMSKVKEIHLNPDTFRKM----------LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL----LDSVRGI  105 (256)
Q Consensus        42 ~~l~l~~l~~~~l~~~~f~~l----------L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l----~~~L~~L  105 (256)
                      .+..+.+++.+++.-+....+          |+.|++|+|.|..+-.+ . ..++|.+|+|++|+|+++    +..|..|
T Consensus       264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L  343 (873)
T KOG4194|consen  264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL  343 (873)
T ss_pred             ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence            334445555555555444433          77777777777766433 3 567777777777777665    2222221


Q ss_pred             cccCCCCchhhc-cCccccccccCCCCCCcEEEccCCCCc-ccc---ccccCCCCCCEEeeccCcCCcccCCC----CCC
Q 043683          106 LTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQKNNFE-RIP---ESVIQLSKLGRLCLRYWERLQSLPKL----PCK  176 (256)
Q Consensus       106 l~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~n~l~-~lp---~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~  176 (256)
                          ..+.++++ +.++ --..|..+.+|++|||+.|.++ .|-   ..+.++++|+.|++.+ |.++++|.-    +.+
T Consensus       344 ----e~LnLs~Nsi~~l-~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~  417 (873)
T KOG4194|consen  344 ----EELNLSHNSIDHL-AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEA  417 (873)
T ss_pred             ----hhhcccccchHHH-HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcc
Confidence                00000100 0000 0234567888999999999887 443   2567789999999988 668888864    888


Q ss_pred             CcEEeccCcccccccccchhchhhhhhc
Q 043683          177 LHELDAHHCTALESLSGLFSSFEARTQY  204 (256)
Q Consensus       177 L~~L~l~~~~~l~~~p~~~~~l~~l~~l  204 (256)
                      |++|++.+|..-..-|+.|..+ .|.+|
T Consensus       418 LE~LdL~~NaiaSIq~nAFe~m-~Lk~L  444 (873)
T KOG4194|consen  418 LEHLDLGDNAIASIQPNAFEPM-ELKEL  444 (873)
T ss_pred             cceecCCCCcceeecccccccc-hhhhh
Confidence            9999998877666667777766 45543

>PLN03210 Resistant to P

Probab=98.95  E-value=6.2e-10  Score=113.88  Aligned_cols=79  Identities=24%  Similarity=0.449  Sum_probs=56.3

Q ss_pred             ccccccCCCCCCcEEEcc-CCCCccccccccCCCCCCEEeeccCcCCcccCCCCCCCcEEeccCcccccccccchhchhh
Q 043683          122 VLPENIGQLSSLGKLDLQ-KNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEA  200 (256)
Q Consensus       122 ~lp~~~~~l~~L~~L~l~-~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~L~~L~l~~~~~l~~~p~~~~~l~~  200 (256)
                      .+|.+++++++|+.|+++ |+.++.+|..+ ++++|+.|++++|+.++.+|....+|+.|+++++ .+..+|.++..+++
T Consensus       793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n-~i~~iP~si~~l~~  870 (1153)
T PLN03210        793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT-GIEEVPWWIEKFSN  870 (1153)
T ss_pred             ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC-CCccChHHHhcCCC
Confidence            468889999999999998 56788898766 7889999999988888777765555555555553 34455555544444


Q ss_pred             hh
Q 043683          201 RT  202 (256)
Q Consensus       201 l~  202 (256)
                      +.
T Consensus       871 L~  872 (1153)
T PLN03210        871 LS  872 (1153)
T ss_pred             CC
Confidence            43

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.93  E-value=1.7e-09  Score=105.29  Aligned_cols=38  Identities=42%  Similarity=0.475  Sum_probs=18.7

Q ss_pred             CCCEEeeccCcCCcccCCCCCCCcEEeccCcccccccccc
Q 043683          155 KLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGL  194 (256)
Q Consensus       155 ~L~~L~l~~~~~l~~lp~~l~~L~~L~l~~~~~l~~~p~~  194 (256)
                      +|+.|++++ +.+..+|..+++|+.|++++|. +..+|..
T Consensus       383 ~L~~LdLs~-N~Lt~LP~l~s~L~~LdLS~N~-LssIP~l  420 (788)
T PRK15387        383 GLKELIVSG-NRLTSLPVLPSELKELMVSGNR-LTSLPML  420 (788)
T ss_pred             ccceEEecC-CcccCCCCcccCCCEEEccCCc-CCCCCcc
Confidence            445555554 2344455444555555555543 4445543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.91  E-value=1.3e-09  Score=88.09  Aligned_cols=98  Identities=28%  Similarity=0.408  Sum_probs=37.2

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN  141 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n  141 (256)
                      ++.|++++|.|+.+..-- .+.+|+.|++++|.|+.+                          +.+..++.|++|++++|
T Consensus        21 ~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--------------------------~~l~~L~~L~~L~L~~N   74 (175)
T PF14580_consen   21 LRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--------------------------EGLPGLPRLKTLDLSNN   74 (175)
T ss_dssp             ---------------S--TT-TT--EEE-TTS--S----------------------------TT----TT--EEE--SS
T ss_pred             cccccccccccccccchhhhhcCCCEEECCCCCCccc--------------------------cCccChhhhhhcccCCC
Confidence            788999999988875332 578899999999988764                          23466788999999999


Q ss_pred             CCccccccc-cCCCCCCEEeeccCcCCcccCCC-----CCCCcEEeccCccc
Q 043683          142 NFERIPESV-IQLSKLGRLCLRYWERLQSLPKL-----PCKLHELDAHHCTA  187 (256)
Q Consensus       142 ~l~~lp~~i-~~l~~L~~L~l~~~~~l~~lp~~-----l~~L~~L~l~~~~~  187 (256)
                      +++++++.+ ..+++|+.|++++ |.+..+.+.     +++|++|++.+|+.
T Consensus        75 ~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   75 RISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             ---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             CCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            999887655 4688999999987 556666554     78889999988774

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.91  E-value=2.3e-10  Score=101.49  Aligned_cols=116  Identities=22%  Similarity=0.377  Sum_probs=97.0

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN  141 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n  141 (256)
                      ...+.+++|.++.+|..+ .+++|..|++++|-+-.+                         |.+++.+..|+.|+++.|
T Consensus       414 vT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-------------------------P~e~~~lv~Lq~LnlS~N  468 (565)
T KOG0472|consen  414 VTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-------------------------PEEMGSLVRLQTLNLSFN  468 (565)
T ss_pred             HHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-------------------------chhhhhhhhhheeccccc
Confidence            667788888888888888 899999999999987654                         888899999999999999


Q ss_pred             CCccccccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccchhchhhhhhcc
Q 043683          142 NFERIPESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGLFSSFEARTQYF  205 (256)
Q Consensus       142 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l~  205 (256)
                      +|..+|+.+..+..|+.+-.++ +.+++++..    +.+|..||+.+| .+..+|..++++++++.+.
T Consensus       469 rFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLe  534 (565)
T KOG0472|consen  469 RFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLE  534 (565)
T ss_pred             ccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCC-chhhCChhhccccceeEEE
Confidence            9999998887777777665554 778888876    778899999875 4889999999999888654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.91  E-value=2.3e-10  Score=101.16  Aligned_cols=79  Identities=20%  Similarity=0.227  Sum_probs=66.5

Q ss_pred             ccCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccchhchhh
Q 043683          126 NIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGLFSSFEA  200 (256)
Q Consensus       126 ~~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~~~~l~~  200 (256)
                      .|..+++|++|++++|+++.|- .+|.++.++++|.+.. |++..+...    +..|+.|++.+|......|..|..+.+
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence            3688999999999999999886 5899999999999998 557777654    789999999998866667888888777


Q ss_pred             hhhcc
Q 043683          201 RTQYF  205 (256)
Q Consensus       201 l~~l~  205 (256)
                      +..++
T Consensus       348 l~~l~  352 (498)
T KOG4237|consen  348 LSTLN  352 (498)
T ss_pred             eeeee
Confidence            77655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.86  E-value=2e-09  Score=104.75  Aligned_cols=69  Identities=29%  Similarity=0.347  Sum_probs=55.6

Q ss_pred             CCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCCCCCCcEEeccCcccccccccchhchhhhhhc
Q 043683          131 SSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEARTQY  204 (256)
Q Consensus       131 ~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l  204 (256)
                      .+|+.|++++|+++.+|..   .++|+.|++++ +.+..+|..+.+|+.|++++|. +..+|..+.++..+..+
T Consensus       382 ~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~-N~LssIP~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~L  450 (788)
T PRK15387        382 SGLKELIVSGNRLTSLPVL---PSELKELMVSG-NRLTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTV  450 (788)
T ss_pred             cccceEEecCCcccCCCCc---ccCCCEEEccC-CcCCCCCcchhhhhhhhhccCc-ccccChHHhhccCCCeE
Confidence            4688999999999988854   36789999998 4578898877789999999865 77899988887766644

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.81  E-value=7e-10  Score=106.80  Aligned_cols=114  Identities=25%  Similarity=0.410  Sum_probs=67.7

Q ss_pred             hhhhhccCCCCCc--cCCccccCCccEEeCcCCcchhh-------HHHHHHhcccCCCCchhhc-cCccccccccCCCCC
Q 043683           63 LRYFHWHGCPLKS--LPSNIHLEKLVLLEMPHSNIQQL-------LDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSS  132 (256)
Q Consensus        63 L~~L~ls~n~l~~--lp~~~~l~~L~~L~L~~n~l~~l-------~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~  132 (256)
                      |+.|++.+|.+++  +|.-.+..+|+.|+|++|++..+       |+.|+.|       .++++ |+  .+|..+..+..
T Consensus       361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL-------~LSGNkL~--~Lp~tva~~~~  431 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEEL-------NLSGNKLT--TLPDTVANLGR  431 (1081)
T ss_pred             HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHH-------hcccchhh--hhhHHHHhhhh
Confidence            6666666666543  33222666777777777766544       2222222       11111 11  12566677777


Q ss_pred             CcEEEccCCCCccccccccCCCCCCEEeeccCcCCcc--cCCC-C-CCCcEEeccCccc
Q 043683          133 LGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQS--LPKL-P-CKLHELDAHHCTA  187 (256)
Q Consensus       133 L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~--lp~~-l-~~L~~L~l~~~~~  187 (256)
                      |++|...+|++..+| ++..+++|+.+|++. |.++.  +|.. + +.|++||+++|..
T Consensus       432 L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  432 LHTLRAHSNQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hHHHhhcCCceeech-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence            888777777887777 777788888888875 33443  2333 3 6788888887764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.81  E-value=3.5e-09  Score=103.17  Aligned_cols=61  Identities=23%  Similarity=0.346  Sum_probs=32.1

Q ss_pred             CCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC-CCCCcEEeccCcccccccccch
Q 043683          131 SSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL-PCKLHELDAHHCTALESLSGLF  195 (256)
Q Consensus       131 ~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L~~L~l~~~~~l~~~p~~~  195 (256)
                      ++|++|++++|.++.+|..+.  ++|+.|++++| .+..+|.. +++|++|++++|. +..+|..+
T Consensus       325 ~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~N~-Lt~LP~~l  386 (754)
T PRK15370        325 PGLKTLEAGENALTSLPASLP--PELQVLDVSKN-QITVLPETLPPTITTLDVSRNA-LTNLPENL  386 (754)
T ss_pred             ccceeccccCCccccCChhhc--CcccEEECCCC-CCCcCChhhcCCcCEEECCCCc-CCCCCHhH
Confidence            355566666666655554442  45666666653 34455543 4456666665543 44455433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.79  E-value=6.6e-09  Score=101.29  Aligned_cols=64  Identities=27%  Similarity=0.392  Sum_probs=45.8

Q ss_pred             CCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC-CCCCcEEeccCcccccccccchhch
Q 043683          131 SSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL-PCKLHELDAHHCTALESLSGLFSSF  198 (256)
Q Consensus       131 ~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L~~L~l~~~~~l~~~p~~~~~l  198 (256)
                      ++|+.|++++|+++.+|..+.  .+|+.|++++| .+..+|.. ..+|+.|++++|. +..+|..+.++
T Consensus       346 ~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N-~Lt~LP~~l~~sL~~LdLs~N~-L~~LP~sl~~~  410 (754)
T PRK15370        346 PELQVLDVSKNQITVLPETLP--PTITTLDVSRN-ALTNLPENLPAALQIMQASRNN-LVRLPESLPHF  410 (754)
T ss_pred             CcccEEECCCCCCCcCChhhc--CCcCEEECCCC-cCCCCCHhHHHHHHHHhhccCC-cccCchhHHHH
Confidence            578888888888888876553  57888888874 46677766 5578888888754 66777765544

>PLN03150 hypothetical protein; Provisional

Probab=98.78  E-value=9.1e-09  Score=99.01  Aligned_cols=106  Identities=25%  Similarity=0.343  Sum_probs=75.7

Q ss_pred             hhhhhccCCCCC-ccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLK-SLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~-~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      ++.|+|++|.+. .+|..+ .+++|+.|+|++|.+.+                        .+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g------------------------~iP~~~~~l~~L~~LdLs~  475 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG------------------------NIPPSLGSITSLEVLDLSY  475 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC------------------------cCChHHhCCCCCCEEECCC
Confidence            556677777754 567777 77888888888877764                        2466677888888888888


Q ss_pred             CCCc-cccccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccc
Q 043683          141 NNFE-RIPESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLS  192 (256)
Q Consensus       141 n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p  192 (256)
                      |+++ .+|+.++++++|+.|++++|+..+.+|..    ..++..+++.+|..+...|
T Consensus       476 N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            8887 67778888888888888887766677765    2345667777666554444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.65  E-value=1.6e-08  Score=81.82  Aligned_cols=95  Identities=22%  Similarity=0.307  Sum_probs=47.9

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCcccccccc-CCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENI-GQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~-~~l~~L~~L~l~~  140 (256)
                      |+.|++++|.++.++ ++ .+++|+.|++++|.|+.+                         ...+ ..+++|++|++++
T Consensus        44 L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i-------------------------~~~l~~~lp~L~~L~L~~   97 (175)
T PF14580_consen   44 LEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSI-------------------------SEGLDKNLPNLQELYLSN   97 (175)
T ss_dssp             --EEE-TTS--S--T-T----TT--EEE--SS---S--------------------------CHHHHHH-TT--EEE-TT
T ss_pred             CCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcc-------------------------ccchHHhCCcCCEEECcC
Confidence            899999999999997 46 899999999999999864                         2222 2478999999999


Q ss_pred             CCCccccc--cccCCCCCCEEeeccCcCCcccCCC-------CCCCcEEeccC
Q 043683          141 NNFERIPE--SVIQLSKLGRLCLRYWERLQSLPKL-------PCKLHELDAHH  184 (256)
Q Consensus       141 n~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~-------l~~L~~L~l~~  184 (256)
                      |++..+.+  .+..+++|+.|++.+|+ +..-+.-       +++|+.||-..
T Consensus        98 N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   98 NKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             S---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence            99987763  57789999999999965 4444542       78899998654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.60  E-value=6.3e-09  Score=95.87  Aligned_cols=136  Identities=26%  Similarity=0.417  Sum_probs=87.0

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |..+.+.+|.+..+|..+ .+..|.+|+|+.|++..++..+-.|  -++.+-+.++ ++  .+|+.++.+..|..||.++
T Consensus       100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l--pLkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~  175 (722)
T KOG0532|consen  100 LESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL--PLKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSK  175 (722)
T ss_pred             HHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC--cceeEEEecCccc--cCCcccccchhHHHhhhhh
Confidence            666677777777777777 7777777777777766542222111  0000000000 11  3377777777888888888


Q ss_pred             CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683          141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEARTQY  204 (256)
Q Consensus       141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l  204 (256)
                      |.+..+|..++.+.+|+.|.+.. +.+..+|..  --.|..||++ |+++..+|-.|.+|+.|+.+
T Consensus       176 nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l  239 (722)
T KOG0532|consen  176 NEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDFS-CNKISYLPVDFRKMRHLQVL  239 (722)
T ss_pred             hhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeecc-cCceeecchhhhhhhhheee
Confidence            88888888888888888888776 445666665  2246777777 45677788888877777654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.58  E-value=7e-09  Score=100.07  Aligned_cols=109  Identities=23%  Similarity=0.317  Sum_probs=66.2

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHH--------HHHh------cccCCCCc-hhhc-cCcc----
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDS--------VRGI------LTRTPNTP-LGQH-LNTL----  121 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~--------L~~L------l~~lp~~~-l~~~-L~~L----  121 (256)
                      |++|...+|.++.+|+.. .+++|+.|+|..|+|..+++.        +..+      +..+|... -..+ |+.|    
T Consensus       289 L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan  368 (1081)
T KOG0618|consen  289 LVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN  368 (1081)
T ss_pred             HHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence            999999999999999988 799999999999999876332        2222      22233211 0000 1111    


Q ss_pred             -----ccccccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCcccCC
Q 043683          122 -----VLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPK  172 (256)
Q Consensus       122 -----~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~  172 (256)
                           ..-..+-++.+|+.|+|++|++.++|+ .+.++..|++|++|+ |+++.+|.
T Consensus       369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~  424 (1081)
T KOG0618|consen  369 NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTLPD  424 (1081)
T ss_pred             CcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chhhhhhH
Confidence                 111223456666666666666666663 455666666666666 44555553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.54  E-value=1.8e-08  Score=86.70  Aligned_cols=113  Identities=20%  Similarity=0.287  Sum_probs=80.3

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN  141 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n  141 (256)
                      |+.+|+|+|.|+.+-.++ -++.++.|++++|.+..+                          .++..+++|+.||+++|
T Consensus       286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--------------------------~nLa~L~~L~~LDLS~N  339 (490)
T KOG1259|consen  286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--------------------------QNLAELPQLQLLDLSGN  339 (490)
T ss_pred             hhhccccccchhhhhhhhhhccceeEEeccccceeee--------------------------hhhhhcccceEeecccc
Confidence            899999999999998888 679999999999998753                          22456777888888888


Q ss_pred             CCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCccccccccc--chhchhhhhh
Q 043683          142 NFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSG--LFSSFEARTQ  203 (256)
Q Consensus       142 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~--~~~~l~~l~~  203 (256)
                      .++.+..+-..+.+.+.|.+++ |.+..+...  +-+|..||+++|. ++.+.+  .++++..+..
T Consensus       340 ~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LSGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~  403 (490)
T KOG1259|consen  340 LLAECVGWHLKLGNIKTLKLAQ-NKIETLSGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLET  403 (490)
T ss_pred             hhHhhhhhHhhhcCEeeeehhh-hhHhhhhhhHhhhhheeccccccc-hhhHHHhcccccccHHHH
Confidence            8777766656677777777776 556665554  5567777777654 443332  4555554443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.46  E-value=1.4e-07  Score=62.69  Aligned_cols=59  Identities=27%  Similarity=0.459  Sum_probs=39.8

Q ss_pred             CCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEee
Q 043683           83 EKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCL  161 (256)
Q Consensus        83 ~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l  161 (256)
                      ++|++|++++|+++.+                        -+..|..+++|++|++++|.++.+|+ .+.++++|++|++
T Consensus         1 p~L~~L~l~~n~l~~i------------------------~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l   56 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEI------------------------PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDL   56 (61)
T ss_dssp             TTESEEEETSSTESEE------------------------CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEE
T ss_pred             CcCcEEECCCCCCCcc------------------------CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeC
Confidence            3567777777776643                        12456677777777777777777763 5677777777777


Q ss_pred             ccCc
Q 043683          162 RYWE  165 (256)
Q Consensus       162 ~~~~  165 (256)
                      ++|+
T Consensus        57 ~~N~   60 (61)
T PF13855_consen   57 SNNN   60 (61)
T ss_dssp             TSSS
T ss_pred             cCCc
Confidence            7643

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.43  E-value=1.2e-07  Score=63.08  Aligned_cols=57  Identities=26%  Similarity=0.512  Sum_probs=49.6

Q ss_pred             hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |++|++++|.+..+|++ | .+++|++|++++|.++.+                        -|..|..+++|++|++++
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i------------------------~~~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI------------------------PPDAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE------------------------ETTTTTTSTTESEEEETS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc------------------------CHHHHcCCCCCCEEeCcC
Confidence            67899999999999976 4 899999999999999764                        246789999999999999


Q ss_pred             CCC
Q 043683          141 NNF  143 (256)
Q Consensus       141 n~l  143 (256)
                      |++
T Consensus        59 N~l   61 (61)
T PF13855_consen   59 NNL   61 (61)
T ss_dssp             SSB
T ss_pred             CcC
Confidence            875

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.42  E-value=1.6e-08  Score=93.34  Aligned_cols=119  Identities=26%  Similarity=0.343  Sum_probs=71.3

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN  141 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n  141 (256)
                      |++|-+++|+++.+|.++ .+..|..|+.+.|.+..++..+..| ..+.++.+.++ +.+.+|++++.+ .|..||++||
T Consensus       145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l-~slr~l~vrRn-~l~~lp~El~~L-pLi~lDfScN  221 (722)
T KOG0532|consen  145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL-TSLRDLNVRRN-HLEDLPEELCSL-PLIRLDFSCN  221 (722)
T ss_pred             ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhH-HHHHHHHHhhh-hhhhCCHHHhCC-ceeeeecccC
Confidence            666666666666666666 5566666666666665553322221 00000000000 000347777755 4888999999


Q ss_pred             CCccccccccCCCCCCEEeeccCcCCcccCCC--CC----CCcEEeccCc
Q 043683          142 NFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PC----KLHELDAHHC  185 (256)
Q Consensus       142 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~----~L~~L~l~~~  185 (256)
                      ++..||-.|.++++|++|.|.+ |-+++=|..  ..    =.++|+...|
T Consensus       222 kis~iPv~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  222 KISYLPVDFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ceeecchhhhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence            9999999999999999998886 547775554  22    2366777666

>PLN03150 hypothetical protein; Provisional

Probab=98.41  E-value=4.1e-07  Score=87.63  Aligned_cols=89  Identities=20%  Similarity=0.302  Sum_probs=78.5

Q ss_pred             ccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCCCc-cccccccCCCCCCEEeecc
Q 043683           85 LVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLGRLCLRY  163 (256)
Q Consensus        85 L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~l~-~lp~~i~~l~~L~~L~l~~  163 (256)
                      ++.|+|++|.+++                        .+|..++.+++|+.|+|++|++. .+|+.++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g------------------------~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~  475 (623)
T PLN03150        420 IDGLGLDNQGLRG------------------------FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY  475 (623)
T ss_pred             EEEEECCCCCccc------------------------cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCC
Confidence            7788899888865                        35888899999999999999998 8999999999999999999


Q ss_pred             CcCCcccCCC---CCCCcEEeccCcccccccccchhc
Q 043683          164 WERLQSLPKL---PCKLHELDAHHCTALESLSGLFSS  197 (256)
Q Consensus       164 ~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~  197 (256)
                      |...+.+|..   +++|++|++++|...+.+|..++.
T Consensus       476 N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~  512 (623)
T PLN03150        476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG  512 (623)
T ss_pred             CCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence            8777788875   889999999999877889988765

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.30  E-value=7.1e-08  Score=83.12  Aligned_cols=35  Identities=17%  Similarity=0.339  Sum_probs=32.1

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL   98 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l   98 (256)
                      +++|++|+|.+..+.+ . .+.+|+.|||++|.+.++
T Consensus       309 ir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~  344 (490)
T KOG1259|consen  309 LRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAEC  344 (490)
T ss_pred             eeEEeccccceeeehh-hhhcccceEeecccchhHhh
Confidence            9999999999998876 5 899999999999999876

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.25  E-value=3.2e-07  Score=91.02  Aligned_cols=97  Identities=28%  Similarity=0.404  Sum_probs=76.3

Q ss_pred             hhhhhccCCC--CCccCCcc--ccCCccEEeCcCCc-chhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEE
Q 043683           63 LRYFHWHGCP--LKSLPSNI--HLEKLVLLEMPHSN-IQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLD  137 (256)
Q Consensus        63 L~~L~ls~n~--l~~lp~~~--~l~~L~~L~L~~n~-l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~  137 (256)
                      |+.|-+..|.  +..++..|  .++.|++|||++|. +.+                         +|.+++.+-+|++|+
T Consensus       547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-------------------------LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-------------------------LPSSIGELVHLRYLD  601 (889)
T ss_pred             cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-------------------------CChHHhhhhhhhccc
Confidence            6677776665  66666654  68888888888763 332                         388888999999999


Q ss_pred             ccCCCCccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccC
Q 043683          138 LQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHH  184 (256)
Q Consensus       138 l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~  184 (256)
                      +++..++.+|.++++|++|.+|++..+..+..+|..   +++|++|.+..
T Consensus       602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            999999999999999999999999887777777665   78889888765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.19  E-value=5.3e-07  Score=81.93  Aligned_cols=97  Identities=28%  Similarity=0.442  Sum_probs=65.4

Q ss_pred             hhhhhccCCCCCccCCcc-ccC-CccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLE-KLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~-~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      ++.|++.+|.+..+|+.. .+. +|+.|++++|.++.+                         |..++.+++|+.|+++.
T Consensus       118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l-------------------------~~~~~~l~~L~~L~l~~  172 (394)
T COG4886         118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL-------------------------PSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeEEecCCcccccCccccccchhhcccccccccchhhh-------------------------hhhhhccccccccccCC
Confidence            788889999999999888 553 899999999998865                         34445566666666666


Q ss_pred             CCCccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCc
Q 043683          141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHC  185 (256)
Q Consensus       141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~  185 (256)
                      |+++.+|...+.+..|+.|++++ +.+..+|..   +..|+.+.++++
T Consensus       173 N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         173 NDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             chhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCC
Confidence            66666665555566666666665 445555553   334666666554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.16  E-value=6.5e-07  Score=79.64  Aligned_cols=55  Identities=16%  Similarity=0.321  Sum_probs=36.0

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcC-Ccchhh
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPH-SNIQQL   98 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~-n~l~~l   98 (256)
                      +++..+++..+.+.+|+.+  ||+|||++|.|+.|-++ | .+++|..|-+.+ |+|+.+
T Consensus        72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l  131 (498)
T KOG4237|consen   72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL  131 (498)
T ss_pred             EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence            3444555566777777776  77777777777776544 4 677766665544 777766

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.10  E-value=3e-06  Score=52.57  Aligned_cols=41  Identities=24%  Similarity=0.403  Sum_probs=33.9

Q ss_pred             CCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCC
Q 043683          131 SSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPK  172 (256)
Q Consensus       131 ~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~  172 (256)
                      ++|++|++++|+++.+|+.+++|++|+.|++++| .+..++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence            4799999999999999988999999999999985 4666653

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.09  E-value=1.1e-06  Score=79.81  Aligned_cols=132  Identities=27%  Similarity=0.417  Sum_probs=81.3

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHH---HHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEE
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLD---SVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLD  137 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~---~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~  137 (256)
                      |+.|++++|.+..+|..+ .+++|+.|++++|++..+..   .+..+    ..+.++++ ++  .+|..+.....|+++.
T Consensus       142 L~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L----~~L~ls~N~i~--~l~~~~~~~~~L~~l~  215 (394)
T COG4886         142 LKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL----NNLDLSGNKIS--DLPPEIELLSALEELD  215 (394)
T ss_pred             cccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhh----hheeccCCccc--cCchhhhhhhhhhhhh
Confidence            888999999999998777 89999999999999887632   11111    00000000 00  1244444455577777


Q ss_pred             ccCCCCccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhhhhh
Q 043683          138 LQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTQ  203 (256)
Q Consensus       138 l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~  203 (256)
                      ++.|....++..+.++.++..+.+.+ +.+..++..   +++++.|++++|. +..++. ++.+..+..
T Consensus       216 ~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~  281 (394)
T COG4886         216 LSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRE  281 (394)
T ss_pred             hcCCcceecchhhhhcccccccccCC-ceeeeccchhccccccceecccccc-cccccc-ccccCccCE
Confidence            77776556666677777777777665 444443333   6678888887754 555655 555554443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.01  E-value=1.9e-06  Score=85.67  Aligned_cols=54  Identities=28%  Similarity=0.503  Sum_probs=44.6

Q ss_pred             eeecChHHHHhh--hhhhhccCCC-CCccCCcc-ccCCccEEeCcCCcchhhHHHHHH
Q 043683           51 EIHLNPDTFRKM--LRYFHWHGCP-LKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRG  104 (256)
Q Consensus        51 ~~~l~~~~f~~l--L~~L~ls~n~-l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~  104 (256)
                      ...++...|..+  |++||+++|. ++.+|..| +|-+|++|++++..++.++.++..
T Consensus       559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~  616 (889)
T KOG4658|consen  559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGN  616 (889)
T ss_pred             hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHH
Confidence            455666668888  9999999887 89999999 899999999999999877443333

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.01  E-value=3.5e-07  Score=70.41  Aligned_cols=76  Identities=21%  Similarity=0.344  Sum_probs=46.8

Q ss_pred             hhhhhccCCCCCccCCcc--ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI--HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~--~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |+..++++|.+..+|+.|  .++.++.|++++|.|.++                         |.++..++.|+.|+++.
T Consensus        55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-------------------------PeE~Aam~aLr~lNl~~  109 (177)
T KOG4579|consen   55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-------------------------PEELAAMPALRSLNLRF  109 (177)
T ss_pred             EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-------------------------hHHHhhhHHhhhccccc
Confidence            555566666666666655  445666666666666543                         55556666666666666


Q ss_pred             CCCccccccccCCCCCCEEeecc
Q 043683          141 NNFERIPESVIQLSKLGRLCLRY  163 (256)
Q Consensus       141 n~l~~lp~~i~~l~~L~~L~l~~  163 (256)
                      |.+...|..|..|.+|..|+..+
T Consensus       110 N~l~~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen  110 NPLNAEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             CccccchHHHHHHHhHHHhcCCC
Confidence            66666666665566666666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.00  E-value=7.1e-06  Score=50.84  Aligned_cols=40  Identities=28%  Similarity=0.524  Sum_probs=34.1

Q ss_pred             CCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCCCcccc
Q 043683           83 EKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFERIP  147 (256)
Q Consensus        83 ~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~l~~lp  147 (256)
                      ++|++|++++|+|+.+                         |..++++++|++|++++|+++.+|
T Consensus         1 ~~L~~L~l~~N~i~~l-------------------------~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDL-------------------------PPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSH-------------------------GGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCccc-------------------------CchHhCCCCCCEEEecCCCCCCCc
Confidence            5799999999999865                         767899999999999999999876

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.76  E-value=1.5e-06  Score=82.71  Aligned_cols=96  Identities=21%  Similarity=0.252  Sum_probs=55.9

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN  141 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n  141 (256)
                      ++.|+|++|++..+- .+ .+++|.+|||++|.++.           +|.++             ..++ .|+.|.+++|
T Consensus       189 le~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~-----------vp~l~-------------~~gc-~L~~L~lrnN  242 (1096)
T KOG1859|consen  189 LESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRH-----------VPQLS-------------MVGC-KLQLLNLRNN  242 (1096)
T ss_pred             hhhhccchhhhhhhH-HHHhcccccccccccchhcc-----------ccccc-------------hhhh-hheeeeeccc
Confidence            666666666666554 34 66666666666666543           23321             1122 2677777777


Q ss_pred             CCccccccccCCCCCCEEeeccCcCCcccCCC-----CCCCcEEeccCcc
Q 043683          142 NFERIPESVIQLSKLGRLCLRYWERLQSLPKL-----PCKLHELDAHHCT  186 (256)
Q Consensus       142 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-----l~~L~~L~l~~~~  186 (256)
                      .++++- ++.+|++|+.||+++ |.+....+.     +..|+.|.+.+|+
T Consensus       243 ~l~tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  243 ALTTLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             HHHhhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            777665 666777777777776 333333222     5566777776654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.74  E-value=2e-05  Score=69.07  Aligned_cols=34  Identities=15%  Similarity=0.144  Sum_probs=19.0

Q ss_pred             hhhhhccCCCCCc-cCCcc-ccCC---ccEEeCcCCcch
Q 043683           63 LRYFHWHGCPLKS-LPSNI-HLEK---LVLLEMPHSNIQ   96 (256)
Q Consensus        63 L~~L~ls~n~l~~-lp~~~-~l~~---L~~L~L~~n~l~   96 (256)
                      |++|++++|.+.. .+..+ .+.+   |++|++++|.+.
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~  121 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG  121 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence            6666666666542 33333 3333   666676666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.72  E-value=2.9e-06  Score=65.41  Aligned_cols=105  Identities=20%  Similarity=0.406  Sum_probs=78.2

Q ss_pred             hhhhhccCCCCCccCCcc----ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccC-CCCCCcEEE
Q 043683           63 LRYFHWHGCPLKSLPSNI----HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIG-QLSSLGKLD  137 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~----~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~-~l~~L~~L~  137 (256)
                      +..++++++++..++.-.    ....|...+|++|.++.+                         |..|. .++.++.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~f-------------------------p~kft~kf~t~t~lN   83 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKF-------------------------PKKFTIKFPTATTLN   83 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhC-------------------------CHHHhhccchhhhhh
Confidence            667788888887776554    456777789999999865                         33333 456789999


Q ss_pred             ccCCCCccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccc
Q 043683          138 LQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGL  194 (256)
Q Consensus       138 l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~  194 (256)
                      +++|.++.+|+++..++.|+.|+++. |.+...|..   +.++..|+..++ ....+|-.
T Consensus        84 l~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d  141 (177)
T KOG4579|consen   84 LANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD  141 (177)
T ss_pred             cchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence            99999999999999999999999998 446666765   556666666653 34445543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.70  E-value=1.8e-05  Score=69.37  Aligned_cols=122  Identities=19%  Similarity=0.221  Sum_probs=64.9

Q ss_pred             hhhhhccCCCCCc-----cCCcc-cc-CCccEEeCcCCcchhh-----HHHHHHhcccCCCCchhhc-cCcc---ccccc
Q 043683           63 LRYFHWHGCPLKS-----LPSNI-HL-EKLVLLEMPHSNIQQL-----LDSVRGILTRTPNTPLGQH-LNTL---VLPEN  126 (256)
Q Consensus        63 L~~L~ls~n~l~~-----lp~~~-~l-~~L~~L~L~~n~l~~l-----~~~L~~Ll~~lp~~~l~~~-L~~L---~lp~~  126 (256)
                      |++|++++|.++.     +...+ .+ ++|+.|++++|.++..     ...+.. +..+..+.+..+ ++.-   .++..
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~~  188 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA-NRDLKELNLANNGIGDAGIRALAEG  188 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHh-CCCcCEEECcCCCCchHHHHHHHHH
Confidence            7888888888662     22334 45 7889999999988732     111111 111222222221 1100   12333


Q ss_pred             cCCCCCCcEEEccCCCCcc-----ccccccCCCCCCEEeeccCcCCccc-----CCC----CCCCcEEeccCcc
Q 043683          127 IGQLSSLGKLDLQKNNFER-----IPESVIQLSKLGRLCLRYWERLQSL-----PKL----PCKLHELDAHHCT  186 (256)
Q Consensus       127 ~~~l~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~l-----p~~----l~~L~~L~l~~~~  186 (256)
                      +..+++|++|++++|.++.     ++..+..+++|++|++++|. +...     ...    .+.|++|++++|.
T Consensus       189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence            4445677777777776642     33345566777777777754 3210     111    2567777777764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=7.9e-05  Score=67.34  Aligned_cols=50  Identities=18%  Similarity=0.310  Sum_probs=32.3

Q ss_pred             CCCeeeecChHHHHhh------------hhhhhccCCCCCccCCc-c--ccCCccEEeCcCCcch
Q 043683           47 SKVKEIHLNPDTFRKM------------LRYFHWHGCPLKSLPSN-I--HLEKLVLLEMPHSNIQ   96 (256)
Q Consensus        47 ~~l~~~~l~~~~f~~l------------L~~L~ls~n~l~~lp~~-~--~l~~L~~L~L~~n~l~   96 (256)
                      .+++.++++.+-|.+.            |+.|+++.|.+...-.+ .  .+.+|+.|.++.|.+.
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls  210 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS  210 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC
Confidence            3445556666655544            77788888876554433 2  5778888888888776

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.56  E-value=5.6e-06  Score=78.86  Aligned_cols=96  Identities=25%  Similarity=0.323  Sum_probs=74.1

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN  141 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n  141 (256)
                      |...++++|.+..+-... -++.|+.|+|++|+++.+                          +.+..++.|+.||+++|
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--------------------------~~Lr~l~~LkhLDlsyN  219 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--------------------------DNLRRLPKLKHLDLSYN  219 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--------------------------HHHHhcccccccccccc
Confidence            666677777777776666 578888888988888764                          23466788999999999


Q ss_pred             CCccccc-cccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcc
Q 043683          142 NFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCT  186 (256)
Q Consensus       142 ~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~  186 (256)
                      .+..+|. ....+. |..|.+.+ |.++++-.+  +.+|+.||+++|-
T Consensus       220 ~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL~gie~LksL~~LDlsyNl  265 (1096)
T KOG1859|consen  220 CLRHVPQLSMVGCK-LQLLNLRN-NALTTLRGIENLKSLYGLDLSYNL  265 (1096)
T ss_pred             hhccccccchhhhh-heeeeecc-cHHHhhhhHHhhhhhhccchhHhh
Confidence            9998884 444554 88899987 667877766  8899999999864

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=1.3e-05  Score=72.37  Aligned_cols=58  Identities=22%  Similarity=0.103  Sum_probs=31.3

Q ss_pred             CCCCCCcEEEccCCC-CccccccccCCCCCCEEeeccCcCCcccCCC-----CCCCcEEeccCcc
Q 043683          128 GQLSSLGKLDLQKNN-FERIPESVIQLSKLGRLCLRYWERLQSLPKL-----PCKLHELDAHHCT  186 (256)
Q Consensus       128 ~~l~~L~~L~l~~n~-l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-----l~~L~~L~l~~~~  186 (256)
                      ..+++|+.|++..|. +........-++.|+.|+|++|+ +..++..     ++.|+.|+++.|.
T Consensus       219 ~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tg  282 (505)
T KOG3207|consen  219 LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTG  282 (505)
T ss_pred             HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhccccC
Confidence            345666666666553 22212233455667777777644 3344432     6666666666553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.47  E-value=6.3e-05  Score=69.09  Aligned_cols=97  Identities=20%  Similarity=0.272  Sum_probs=53.0

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN  141 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n  141 (256)
                      ++.+.+..|.+..+-..+ .+++|..|++.+|+|+++                         ...+..+++|++|++++|
T Consensus        74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-------------------------~~~l~~~~~L~~L~ls~N  128 (414)
T KOG0531|consen   74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-------------------------ENLLSSLVNLQVLDLSFN  128 (414)
T ss_pred             HHhhccchhhhhhhhcccccccceeeeeccccchhhc-------------------------ccchhhhhcchheecccc
Confidence            455555555555543434 566666666666666543                         111344556666666666


Q ss_pred             CCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcc
Q 043683          142 NFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCT  186 (256)
Q Consensus       142 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~  186 (256)
                      .|+.+. .+..+..|+.|++++ |.+..+...  +.+|+.+++++|.
T Consensus       129 ~I~~i~-~l~~l~~L~~L~l~~-N~i~~~~~~~~l~~L~~l~l~~n~  173 (414)
T KOG0531|consen  129 KITKLE-GLSTLTLLKELNLSG-NLISDISGLESLKSLKLLDLSYNR  173 (414)
T ss_pred             cccccc-chhhccchhhheecc-CcchhccCCccchhhhcccCCcch
Confidence            666554 344455566666665 335555544  5556666666544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.36  E-value=4.1e-05  Score=70.31  Aligned_cols=36  Identities=17%  Similarity=0.321  Sum_probs=30.2

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL   98 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l   98 (256)
                      +.+|++.+|.|..+...+ .+++|++|++++|.|+.+
T Consensus        97 l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i  133 (414)
T KOG0531|consen   97 LEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL  133 (414)
T ss_pred             eeeeeccccchhhcccchhhhhcchheeccccccccc
Confidence            888888888888887756 788999999999988765

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.23  E-value=0.00032  Score=63.90  Aligned_cols=87  Identities=20%  Similarity=0.376  Sum_probs=56.0

Q ss_pred             CCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC-CCCCcEEeccCcccccccccchhchhhh-hhccC
Q 043683          129 QLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL-PCKLHELDAHHCTALESLSGLFSSFEAR-TQYFD  206 (256)
Q Consensus       129 ~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L~~L~l~~~~~l~~~p~~~~~l~~l-~~l~~  206 (256)
                      .+.+++.|+++++.++.+| .  -..+|+.|.+++|+.+..+|.. +.+|++|++++|..+..+|..+..+.-. ..+..
T Consensus        50 ~~~~l~~L~Is~c~L~sLP-~--LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n~~~~  126 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP-V--LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPESVRSLEIKGSATDS  126 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC-C--CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccccccceEEeCCCCCcc
Confidence            3567778888877777777 2  2346888888877777777765 5678888888876677777776654310 01123


Q ss_pred             CcccHHHHHHhH
Q 043683          207 LRILEDALQETQ  218 (256)
Q Consensus       207 l~~~~~~~~~~~  218 (256)
                      +..+|..+..+.
T Consensus       127 L~~LPssLk~L~  138 (426)
T PRK15386        127 IKNVPNGLTSLS  138 (426)
T ss_pred             cccCcchHhhee
Confidence            445566555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.20  E-value=0.00041  Score=56.93  Aligned_cols=77  Identities=19%  Similarity=0.258  Sum_probs=41.9

Q ss_pred             hhhhhccCCCCCccCCcc--ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI--HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~--~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |..|.+++|.|+.+-+.+  -+++|..|.+.+|.|.++        +.+..               +..++.|++|.+-+
T Consensus        66 L~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l--------~dl~p---------------La~~p~L~~Ltll~  122 (233)
T KOG1644|consen   66 LHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL--------GDLDP---------------LASCPKLEYLTLLG  122 (233)
T ss_pred             cceEEecCCcceeeccchhhhccccceEEecCcchhhh--------hhcch---------------hccCCccceeeecC
Confidence            556666666666665555  345566666666665542        11111               14455666666666


Q ss_pred             CCCccccc----cccCCCCCCEEeec
Q 043683          141 NNFERIPE----SVIQLSKLGRLCLR  162 (256)
Q Consensus       141 n~l~~lp~----~i~~l~~L~~L~l~  162 (256)
                      |.++..+.    .+..+++|+.||..
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehh
Confidence            66554432    34556666666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.01  E-value=0.00083  Score=61.24  Aligned_cols=60  Identities=17%  Similarity=0.372  Sum_probs=28.7

Q ss_pred             CCcEEEcc-CCCCccccccccCCCCCCEEeeccCcCCcccCCCCCCCcEEeccC--cccccccccchh
Q 043683          132 SLGKLDLQ-KNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHH--CTALESLSGLFS  196 (256)
Q Consensus       132 ~L~~L~l~-~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~L~~L~l~~--~~~l~~~p~~~~  196 (256)
                      +|++|.++ +++++.+|..+  ..+|++|++++|..+..+|.   +|+.|++..  +..+..+|..+.
T Consensus        73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~---sLe~L~L~~n~~~~L~~LPssLk  135 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE---SVRSLEIKGSATDSIKNVPNGLT  135 (426)
T ss_pred             CCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc---ccceEEeCCCCCcccccCcchHh
Confidence            45556665 45555555433  24556666665544544443   244444432  223444554443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.83  E-value=0.0004  Score=67.69  Aligned_cols=76  Identities=20%  Similarity=0.333  Sum_probs=41.2

Q ss_pred             hhhhhccCCC-C-CccCCcc--ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEc
Q 043683           63 LRYFHWHGCP-L-KSLPSNI--HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDL  138 (256)
Q Consensus        63 L~~L~ls~n~-l-~~lp~~~--~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l  138 (256)
                      |++|++++.. + ...|..+  .+++|+.|.+.+-.+..-  ..                     -.-..++++|..||+
T Consensus       124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~--dF---------------------~~lc~sFpNL~sLDI  180 (699)
T KOG3665|consen  124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND--DF---------------------SQLCASFPNLRSLDI  180 (699)
T ss_pred             hhhcCccccchhhccHHHHHhhhCcccceEEecCceecch--hH---------------------HHHhhccCccceeec
Confidence            8888888765 2 2334444  578888888777544211  00                     011134555566666


Q ss_pred             cCCCCccccccccCCCCCCEEeec
Q 043683          139 QKNNFERIPESVIQLSKLGRLCLR  162 (256)
Q Consensus       139 ~~n~l~~lp~~i~~l~~L~~L~l~  162 (256)
                      |+.+++.+ .+++.|++|+.|.+.
T Consensus       181 S~TnI~nl-~GIS~LknLq~L~mr  203 (699)
T KOG3665|consen  181 SGTNISNL-SGISRLKNLQVLSMR  203 (699)
T ss_pred             CCCCccCc-HHHhccccHHHHhcc
Confidence            65555554 355555555555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.79  E-value=0.0026  Score=52.27  Aligned_cols=98  Identities=19%  Similarity=0.204  Sum_probs=62.2

Q ss_pred             hhhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC
Q 043683           63 LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN  142 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~  142 (256)
                      ...+|+++|.+..++.--.++.|..|.+.+|+|+.+-+.|.                        .-+++|+.|.+.+|.
T Consensus        44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~------------------------~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD------------------------TFLPNLKTLILTNNS   99 (233)
T ss_pred             cceecccccchhhcccCCCccccceEEecCCcceeeccchh------------------------hhccccceEEecCcc
Confidence            55677888877766532277888888888888776422221                        134567888888888


Q ss_pred             Cccccc--cccCCCCCCEEeeccCcCCcccCCC-------CCCCcEEeccCc
Q 043683          143 FERIPE--SVIQLSKLGRLCLRYWERLQSLPKL-------PCKLHELDAHHC  185 (256)
Q Consensus       143 l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~-------l~~L~~L~l~~~  185 (256)
                      +.++-+  -+..+++|++|.+-+|+ ......-       +++|+.||.+.-
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence            776642  45567777877776643 3333221       677787777653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.00013  Score=62.61  Aligned_cols=93  Identities=23%  Similarity=0.279  Sum_probs=71.5

Q ss_pred             hhhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC
Q 043683           63 LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN  142 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~  142 (256)
                      .+.|+.-++.+..+.-.-.++.|++|.|+-|+|+.+                          ..+..+++|++|+|..|.
T Consensus        21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL--------------------------~pl~rCtrLkElYLRkN~   74 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL--------------------------APLQRCTRLKELYLRKNC   74 (388)
T ss_pred             hhhhcccCCCccHHHHHHhcccceeEEeeccccccc--------------------------hhHHHHHHHHHHHHHhcc
Confidence            677787788887764333789999999999998764                          234677889999999999


Q ss_pred             Cccccc--cccCCCCCCEEeeccCcCCcccCCC--------CCCCcEEe
Q 043683          143 FERIPE--SVIQLSKLGRLCLRYWERLQSLPKL--------PCKLHELD  181 (256)
Q Consensus       143 l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~--------l~~L~~L~  181 (256)
                      |.++.+  -+.++++|+.|+|..|+-.+.-+..        +++|+.||
T Consensus        75 I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   75 IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            988874  4578999999999887766655443        77888876

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.50  E-value=0.00091  Score=34.80  Aligned_cols=22  Identities=45%  Similarity=0.608  Sum_probs=16.7

Q ss_pred             CCcEEEccCCCCccccccccCC
Q 043683          132 SLGKLDLQKNNFERIPESVIQL  153 (256)
Q Consensus       132 ~L~~L~l~~n~l~~lp~~i~~l  153 (256)
                      +|++||+++|+++.+|+++++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            4788888888888888776553

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.40  E-value=0.003  Score=53.66  Aligned_cols=101  Identities=21%  Similarity=0.162  Sum_probs=61.2

Q ss_pred             hhhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC
Q 043683           63 LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN  142 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~  142 (256)
                      |..|.+.+..++.+-..-.|++|++|.++.|.....        .              .++.....+++|+++++++|+
T Consensus        45 le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~--------~--------------~l~vl~e~~P~l~~l~ls~Nk  102 (260)
T KOG2739|consen   45 LELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVS--------G--------------GLEVLAEKAPNLKVLNLSGNK  102 (260)
T ss_pred             hhhhhhhccceeecccCCCcchhhhhcccCCccccc--------c--------------cceehhhhCCceeEEeecCCc
Confidence            555566655555443222678888888888843311        0              112222445888999999888


Q ss_pred             Ccccc--ccccCCCCCCEEeeccCcCCcccCCC-------CCCCcEEeccCcc
Q 043683          143 FERIP--ESVIQLSKLGRLCLRYWERLQSLPKL-------PCKLHELDAHHCT  186 (256)
Q Consensus       143 l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~~-------l~~L~~L~l~~~~  186 (256)
                      ++.+.  +....+.+|..|++.+|.-.. +-.-       +++|++|+-....
T Consensus       103 i~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  103 IKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             cccccccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence            87432  245567777888888765333 3221       6788888766544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.08  E-value=0.0042  Score=52.77  Aligned_cols=34  Identities=15%  Similarity=0.170  Sum_probs=15.6

Q ss_pred             hhhhhccCC--C-CCccCCcc-ccCCccEEeCcCCcch
Q 043683           63 LRYFHWHGC--P-LKSLPSNI-HLEKLVLLEMPHSNIQ   96 (256)
Q Consensus        63 L~~L~ls~n--~-l~~lp~~~-~l~~L~~L~L~~n~l~   96 (256)
                      |++|.++.|  . ...++.-+ .+++|+++++++|+++
T Consensus        67 LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   67 LKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             hhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            555555555  2 12233333 3455555555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.85  E-value=0.0029  Score=61.78  Aligned_cols=36  Identities=22%  Similarity=0.325  Sum_probs=24.6

Q ss_pred             hhhhhccCCCCC--ccCCcc-ccCCccEEeCcCCcchhh
Q 043683           63 LRYFHWHGCPLK--SLPSNI-HLEKLVLLEMPHSNIQQL   98 (256)
Q Consensus        63 L~~L~ls~n~l~--~lp~~~-~l~~L~~L~L~~n~l~~l   98 (256)
                      |+.|.+++-.+.  ++-.-. ++++|..||+|+++++.+
T Consensus       150 L~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl  188 (699)
T KOG3665|consen  150 LRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL  188 (699)
T ss_pred             cceEEecCceecchhHHHHhhccCccceeecCCCCccCc
Confidence            888888775532  222223 678999999999888754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.22  E-value=0.016  Score=51.31  Aligned_cols=63  Identities=21%  Similarity=0.198  Sum_probs=43.1

Q ss_pred             cccCCCCCCcEEEccCCCCcc-----ccccccCCCCCCEEeeccCcCCcc--------cCCCCCCCcEEeccCccc
Q 043683          125 ENIGQLSSLGKLDLQKNNFER-----IPESVIQLSKLGRLCLRYWERLQS--------LPKLPCKLHELDAHHCTA  187 (256)
Q Consensus       125 ~~~~~l~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~--------lp~~l~~L~~L~l~~~~~  187 (256)
                      ..+..+++|+.|||..|-|+.     +...+..+++|+.|++++|..-..        +-...++|++|.+.+|..
T Consensus       207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence            345678889999999888763     334566778889999988863111        111267788888888753

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.13  E-value=0.0072  Score=52.68  Aligned_cols=36  Identities=14%  Similarity=0.233  Sum_probs=28.4

Q ss_pred             hhhhhccCCCCCccCCc--c--ccCCccEEeCcCCcchhh
Q 043683           63 LRYFHWHGCPLKSLPSN--I--HLEKLVLLEMPHSNIQQL   98 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~--~--~l~~L~~L~L~~n~l~~l   98 (256)
                      ++.||+.+|.|+....-  +  +++.|++|+++.|.+...
T Consensus        73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~  112 (418)
T KOG2982|consen   73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD  112 (418)
T ss_pred             hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc
Confidence            88899999988765432  2  789999999999988654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.02  E-value=0.014  Score=28.28  Aligned_cols=16  Identities=38%  Similarity=0.706  Sum_probs=7.3

Q ss_pred             CCcEEEccCCCCcccc
Q 043683          132 SLGKLDLQKNNFERIP  147 (256)
Q Consensus       132 ~L~~L~l~~n~l~~lp  147 (256)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4666666666665554

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.93  E-value=0.045  Score=29.34  Aligned_cols=21  Identities=33%  Similarity=0.637  Sum_probs=17.3

Q ss_pred             CCCCcEEEccCCCCccccccc
Q 043683          130 LSSLGKLDLQKNNFERIPESV  150 (256)
Q Consensus       130 l~~L~~L~l~~n~l~~lp~~i  150 (256)
                      +++|++|+|++|+++.+|+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467899999999999998654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.93  E-value=0.045  Score=29.34  Aligned_cols=21  Identities=33%  Similarity=0.637  Sum_probs=17.3

Q ss_pred             CCCCcEEEccCCCCccccccc
Q 043683          130 LSSLGKLDLQKNNFERIPESV  150 (256)
Q Consensus       130 l~~L~~L~l~~n~l~~lp~~i  150 (256)
                      +++|++|+|++|+++.+|+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467899999999999998654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=93.79  E-value=0.012  Score=51.38  Aligned_cols=56  Identities=21%  Similarity=0.280  Sum_probs=29.7

Q ss_pred             CCCCCCcEEEcc-CCCCc-cccccccCCCCCCEEeeccCcCCcccCCC------CCCCcEEeccCc
Q 043683          128 GQLSSLGKLDLQ-KNNFE-RIPESVIQLSKLGRLCLRYWERLQSLPKL------PCKLHELDAHHC  185 (256)
Q Consensus       128 ~~l~~L~~L~l~-~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~------l~~L~~L~l~~~  185 (256)
                      ..+++|..|||+ ++.++ ..-..+.++.-|++|.++.|..+  +|..      .++|.+|++.+|
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence            345666666666 34444 22234556666666666665422  2221      456666666654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.74  E-value=0.033  Score=28.78  Aligned_cols=21  Identities=33%  Similarity=0.382  Sum_probs=12.0

Q ss_pred             CCcEEeccCcccccccccchhc
Q 043683          176 KLHELDAHHCTALESLSGLFSS  197 (256)
Q Consensus       176 ~L~~L~l~~~~~l~~~p~~~~~  197 (256)
                      +|++|++++| .+..+|+.+++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTTT
T ss_pred             CccEEECCCC-cCEeCChhhcC
Confidence            3566666666 34466665543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=93.67  E-value=0.011  Score=52.44  Aligned_cols=59  Identities=20%  Similarity=0.209  Sum_probs=36.3

Q ss_pred             cCCCCCCcEEEccCCCCc--c---ccccccCCCCCCEEeeccCcCCcccCC--------CCCCCcEEeccCcc
Q 043683          127 IGQLSSLGKLDLQKNNFE--R---IPESVIQLSKLGRLCLRYWERLQSLPK--------LPCKLHELDAHHCT  186 (256)
Q Consensus       127 ~~~l~~L~~L~l~~n~l~--~---lp~~i~~l~~L~~L~l~~~~~l~~lp~--------~l~~L~~L~l~~~~  186 (256)
                      +...+.|+.+.+..|.+.  .   +-.++..+++|+.||+.+|. ++.--.        .+++|+.|++++|.
T Consensus       181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccc
Confidence            445566777777766654  1   23356678888888888743 322111        14577888888875

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.75  E-value=0.01  Score=51.33  Aligned_cols=66  Identities=20%  Similarity=0.231  Sum_probs=52.8

Q ss_pred             CCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC-----CCCCcEEeccCcccccccccch
Q 043683          128 GQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL-----PCKLHELDAHHCTALESLSGLF  195 (256)
Q Consensus       128 ~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-----l~~L~~L~l~~~~~l~~~p~~~  195 (256)
                      ..++.|++|.|+-|+++++. .+..+++|++|+|.. |.+.++.+.     +++|+.|.+..|+--+.-+...
T Consensus        38 ~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nY  108 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNY  108 (388)
T ss_pred             HhcccceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccchhH
Confidence            56888999999999999886 577899999999987 556666554     7899999999887766555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.66  E-value=0.04  Score=48.14  Aligned_cols=47  Identities=19%  Similarity=0.188  Sum_probs=30.9

Q ss_pred             cccCCCCCCcEEEccCCCCcccc--ccccCCCCCCEEeeccCcCCcccC
Q 043683          125 ENIGQLSSLGKLDLQKNNFERIP--ESVIQLSKLGRLCLRYWERLQSLP  171 (256)
Q Consensus       125 ~~~~~l~~L~~L~l~~n~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp  171 (256)
                      ..+..++.+--|+|+.|++.+..  .++..+++|..|.+++++....+.
T Consensus       218 k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  218 KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence            33455666677777777776543  366777888888888766555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=92.29  E-value=0.0066  Score=52.93  Aligned_cols=39  Identities=26%  Similarity=0.272  Sum_probs=20.9

Q ss_pred             cCCCCCCcEEEcc-CCCCcccc--ccccCCCCCCEEeeccCc
Q 043683          127 IGQLSSLGKLDLQ-KNNFERIP--ESVIQLSKLGRLCLRYWE  165 (256)
Q Consensus       127 ~~~l~~L~~L~l~-~n~l~~lp--~~i~~l~~L~~L~l~~~~  165 (256)
                      +..-.+|+.|+++ +++|++..  --+.+++.|..|+++.|.
T Consensus       230 iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~  271 (419)
T KOG2120|consen  230 IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF  271 (419)
T ss_pred             HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence            3444566666666 55665332  234555566666555543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.41  E-value=0.0054  Score=51.67  Aligned_cols=57  Identities=19%  Similarity=0.169  Sum_probs=36.2

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN  141 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n  141 (256)
                      +..|+++.|.+.-+|.++ .+..++.++++.|..+..                         |.+++..+.++++++..|
T Consensus        67 ~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~-------------------------p~s~~k~~~~k~~e~k~~  121 (326)
T KOG0473|consen   67 LVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQ-------------------------PKSQKKEPHPKKNEQKKT  121 (326)
T ss_pred             HHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhC-------------------------CccccccCCcchhhhccC
Confidence            566666666666666666 666666666666665543                         666666666666666666


Q ss_pred             CCc
Q 043683          142 NFE  144 (256)
Q Consensus       142 ~l~  144 (256)
                      .|.
T Consensus       122 ~~~  124 (326)
T KOG0473|consen  122 EFF  124 (326)
T ss_pred             cch
Confidence            544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.31  E-value=0.043  Score=46.36  Aligned_cols=34  Identities=9%  Similarity=-0.126  Sum_probs=24.4

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcch
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQ   96 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~   96 (256)
                      ++.+++..|+.+..|.++ .+++++++++..|.+.
T Consensus        90 ~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   90 TVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HHHHHhhccchhhCCccccccCCcchhhhccCcch
Confidence            666677777777777777 7777777777777654

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.57  E-value=0.44  Score=25.75  Aligned_cols=18  Identities=33%  Similarity=0.665  Sum_probs=14.0

Q ss_pred             CCCcEEEccCCCCccccc
Q 043683          131 SSLGKLDLQKNNFERIPE  148 (256)
Q Consensus       131 ~~L~~L~l~~n~l~~lp~  148 (256)
                      .+|++|+.++|+++++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            357888888888888885

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=85.02  E-value=1.3  Score=32.95  Aligned_cols=34  Identities=15%  Similarity=0.277  Sum_probs=13.3

Q ss_pred             CCCCCCcEEEccCCCCccccc-cccCCCCCCEEeec
Q 043683          128 GQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLR  162 (256)
Q Consensus       128 ~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~  162 (256)
                      ....+++.+.+.. .+..++. .+..+.+|+.+++.
T Consensus        55 ~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   55 SNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             TT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             ecccccccccccc-cccccccccccccccccccccC
Confidence            3444455555543 3333432 33445555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=81.37  E-value=1.2  Score=38.77  Aligned_cols=36  Identities=31%  Similarity=0.395  Sum_probs=16.5

Q ss_pred             CCCCCCcEEEccCCCCc-ccccc----ccCCCCCCEEeecc
Q 043683          128 GQLSSLGKLDLQKNNFE-RIPES----VIQLSKLGRLCLRY  163 (256)
Q Consensus       128 ~~l~~L~~L~l~~n~l~-~lp~~----i~~l~~L~~L~l~~  163 (256)
                      -+++.|+..+||.|.|. ..|+.    |..-+.|.+|.+++
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~N  129 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNN  129 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeec
Confidence            34445555555555554 33332    22334455555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	256
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 7e-12
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 21/129 (16%)

Query: 63  LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTL 121
           L+        ++SLP++I +L+ L  L++ +S +  L  ++   L           L  L
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI-HHLP---------KLEEL 234

Query: 122 ---------VLPENIGQLSSLGKLDLQ-KNNFERIPESVIQLSKLGRLCLRYWERLQSLP 171
                      P   G  + L +L L+  +N   +P  + +L++L +L LR    L  LP
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

Query: 172 KLPCKLHEL 180
            L  +L   
Sbjct: 295 SLIAQLPAN 303

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 12/141 (8%)

Query: 63  LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTL 121
           L        PL++LP++I  L +L  L +        L         +       +L +L
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 122 --------VLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL 173
                    LP +I  L +L  L ++ +    +  ++  L KL  L LR    L++ P +
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 174 PCK---LHELDAHHCTALESL 191
                 L  L    C+ L +L
Sbjct: 249 FGGRAPLKRLILKDCSNLLTL 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 27/132 (20%)

Query: 63  LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTL 121
                    PL   P     L  L  + +  + + +L                       
Sbjct: 83  RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMEL----------------------- 119

Query: 122 VLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELD 181
             P+ + Q + L  L L +N    +P S+  L++L  L +R    L  LP+         
Sbjct: 120 --PDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 182 A-HHCTALESLS 192
                  L+SL 
Sbjct: 178 EHQGLVNLQSLR 189

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 14/136 (10%)

Query: 63  LRYFHWHGC-PLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTL 121
               ++ G   L+       L +         N                 T  G+ L   
Sbjct: 14  RENLYFQGSTALRPYHD--VLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKAT 71

Query: 122 VLPENIGQLSSLG--KLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLP----KLPC 175
              + +   +  G   L+L+     + P+   +LS L  + +     L  LP    +   
Sbjct: 72  --ADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDA-AGLMELPDTMQQFA- 127

Query: 176 KLHELDAHHCTALESL 191
            L  L       L +L
Sbjct: 128 GLETLTLARN-PLRAL 142

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 44/165 (26%), Positives = 57/165 (34%), Gaps = 35/165 (21%)

Query: 63  LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGI------LTRTPNTPLG 115
           LR     G  L SLP     L +L +   P +++  L   +  +      LT  P  P G
Sbjct: 83  LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPG 142

Query: 116 -QHLNTL-----VLPENIGQL-----------------SSLGKLDLQKNNFERIPESVIQ 152
            Q L+        LP    +L                 S L +L +  N    +P    +
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSE 202

Query: 153 LSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSS 197
           L KL         RL SLP LP  L EL       L SL  L S 
Sbjct: 203 LYKLWAYNN----RLTSLPALPSGLKELIVSGN-RLTSLPVLPSE 242

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 31/129 (24%), Positives = 43/129 (33%), Gaps = 16/129 (12%)

Query: 70  GCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLV-LPENIG 128
              L +LP  +    +  L +P +N+  L      +        L    N L  LP    
Sbjct: 49  ESGLTTLPDCL-PAHITTLVIPDNNLTSLPALPPEL------RTLEVSGNQLTSLPVLPP 101

Query: 129 QLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTAL 188
            L  L        +   +P        L +L +    +L SLP LP  L EL       L
Sbjct: 102 GLLELSIFSNPLTHLPALPSG------LCKLWIFGN-QLTSLPVLPPGLQELSVSDN-QL 153

Query: 189 ESLSGLFSS 197
            SL  L S 
Sbjct: 154 ASLPALPSE 162

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 32/181 (17%), Positives = 54/181 (29%), Gaps = 27/181 (14%)

Query: 63  LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGI------LTRTPNTPLG 115
           L+        L SLP+    L KL       +++  L   ++ +      LT  P  P  
Sbjct: 183 LQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP-- 240

Query: 116 QHLNTL--------VLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRY---- 163
             L  L         LP     L SL    + +N   R+PES+I LS    + L      
Sbjct: 241 SELKELMVSGNRLTSLPMLPSGLLSL---SVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297

Query: 164 ---WERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEARTQYFDLRILEDALQETQLL 220
               + L+ +   P     +         +     +   A   +       +     +  
Sbjct: 298 ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH 357

Query: 221 E 221
            
Sbjct: 358 M 358

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 111 NTPLGQHLNTLVLPENIGQ--LSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQ 168
             P  +      + + +     +    L++ ++    +P+ +   + +  L +     L 
Sbjct: 18  AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDN-NLT 74

Query: 169 SLPKLPCKLHELDAHHCTALESLSGLFSS 197
           SLP LP +L  L+      L SL  L   
Sbjct: 75  SLPALPPELRTLEVSGN-QLTSLPVLPPG 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 38/249 (15%), Positives = 76/249 (30%), Gaps = 68/249 (27%)

Query: 9   ESMNDLGKRSWLWHHEDSIK--------FLTSNAGRILIEGIC-------LGMSKVKEI- 52
           E  + L K  +L      +            S     + +G+        +   K+  I 
Sbjct: 302 EVKSLLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 53  -----HLNPDTFRKMLRYFHWHGCPLKSLPSNIHLEKLVL----LEMPHSNIQQLLDSV- 102
                 L P  +RKM          L   P + H+  ++L     ++  S++  +++ + 
Sbjct: 360 ESSLNVLEPAEYRKMFDR-------LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 103 -RGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCL 161
              ++ + P        +T+ +P     L    KL+                  L R  +
Sbjct: 413 KYSLVEKQPKE------STISIPS--IYLELKVKLE--------------NEYALHRSIV 450

Query: 162 RYWERLQSLPKLPCKLHELD-------AHHCTALESLSGLFSSFEARTQYFDLRILEDAL 214
            ++   ++          LD        HH   +E      + F  R  + D R LE  +
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-HPERMTLF--RMVFLDFRFLEQKI 507

Query: 215 QETQLLEAA 223
           +       A
Sbjct: 508 RHDSTAWNA 516

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 23/155 (14%), Positives = 48/155 (30%), Gaps = 32/155 (20%)

Query: 53  HLNPDTFRKM--LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTP 110
           +++PD  +++  L++       LK  P    +    +          +L+          
Sbjct: 95  YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIF--------FILE---------- 136

Query: 111 NTPLGQHLNTLVLPENI--GQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQ 168
              +  +     +P N   G  +    L L  N F  +       +KL  + L   + L 
Sbjct: 137 ---ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLT 193

Query: 169 SLP-----KLPCKLHELDAHHCTALESL-SGLFSS 197
            +       +      LD    T++ +L S     
Sbjct: 194 VIDKDAFGGVYSGPSLLDVSQ-TSVTALPSKGLEH 227

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 63  LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLV 122
           L +       L+ LP   +L  L  +   ++++++L               L   L ++V
Sbjct: 175 LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL-------------PDLPLSLESIV 221

Query: 123 LPEN-------IGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPC 175
              N       +  L  L  +    N  + +P+    L  L          L  LP+LP 
Sbjct: 222 AGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN----YLTDLPELPQ 277

Query: 176 KLHELDAHHCTALESLSGLFSS 197
            L  LD         LS L  +
Sbjct: 278 SLTFLDVSEN-IFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 33/172 (19%), Positives = 56/172 (32%), Gaps = 34/172 (19%)

Query: 56  PDTFRKMLRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGI----LTRTP 110
            D   +       +   L SLP    HLE LV      + + +L  S++ +         
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA 125

Query: 111 NTPLGQHLNTLVLPEN-------IGQLSSLGKLDLQKNNFERIPES-------------- 149
            + L   L  L +  N       +   S L  +D+  N+ +++P+               
Sbjct: 126 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 185

Query: 150 -----VIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHC--TALESLSGL 194
                +  L  L  +       L+ LP LP  L  + A +     L  L  L
Sbjct: 186 EELPELQNLPFLTAIYADN-NSLKKLPDLPLSLESIVAGNNILEELPELQNL 236

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 26/154 (16%), Positives = 45/154 (29%), Gaps = 39/154 (25%)

Query: 63  LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGI------LTRTPNTPLG 115
           L   +     L  LP     L  L + E   S + +L  ++  +      +    + P  
Sbjct: 259 LEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP-- 316

Query: 116 QHLNTL--------VLPENIGQL-----------------SSLGKLDLQKNNFERIPESV 150
             L  L         LP    +L                  +L +L ++ N     P+  
Sbjct: 317 PSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIP 376

Query: 151 IQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHH 184
             +  L          L  +P+LP  L +L    
Sbjct: 377 ESVEDLRMNS-----HLAEVPELPQNLKQLHVET 405

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 13/115 (11%)

Query: 61  KMLRYFHWHGCP-LKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHL 118
           K L     + CP L  LP+ +  L ++ L+ +   N     + ++       + P+G+ +
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINV-ACNRGISGEQLKDDWQALADAPVGEKI 307

Query: 119 NTLVL----------PENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRY 163
             + +            ++ ++  LG L+   N  E    +     KL  L L Y
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAY 362

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 17/133 (12%), Positives = 40/133 (30%), Gaps = 18/133 (13%)

Query: 61  KMLRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQL-LDSVRGILTRTPNTPLGQHLN 119
           + +    +    LK +P+    + +       S +  +        +             
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAKSV-------SVMSAIDFSYNE--IGSVDGKNFDP--- 424

Query: 120 TLVLPENIGQLSSLGKLDLQKNNFERIPESVIQ-LSKLGRLCLRYWERLQSLPKLPCKLH 178
              L     +  ++  ++L  N   + P+ +    S L  + L     L  +PK   K  
Sbjct: 425 ---LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG-NMLTEIPKNSLKDE 480

Query: 179 ELDAHHCTALESL 191
             +  +   L S+
Sbjct: 481 NENFKNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 15/133 (11%), Positives = 33/133 (24%), Gaps = 9/133 (6%)

Query: 63  LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTL 121
                     +  +   +  L KL    M +S                            
Sbjct: 185 DTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN-----SEYAQQYK 239

Query: 122 VLPENIGQLSSLGKLDLQKNNF-ERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHEL 180
                   L  L  +++       ++P  +  L ++  + +    R  S  +L      L
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC-NRGISGEQLKDDWQAL 298

Query: 181 -DAHHCTALESLS 192
            DA     ++ + 
Sbjct: 299 ADAPVGEKIQIIY 311

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 26/174 (14%), Positives = 52/174 (29%), Gaps = 10/174 (5%)

Query: 20  LWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFRKMLRYFHWHGCPLKSLPSN 79
               E   +   S     +++       +++E+          +        PL      
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 404

Query: 80  I-HLEKLVLLEMPHSNIQQLLDSVRGILTR------TPNTPLGQHLNTLVLPENIGQLSS 132
           + +   L  ++   +     L S   +              L      L +  ++ QL  
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL 464

Query: 133 LGKLDLQKNNFERIPESVIQLSKLGRLCLRY--WERLQSLPKLPCKLHELDAHH 184
           +  LDL  N    +P ++  L  L  L       E +  +  LP +L EL   +
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLP-RLQELLLCN 517

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 33/175 (18%), Positives = 57/175 (32%), Gaps = 24/175 (13%)

Query: 45  GMSKVKEIHLN---------PDTFRKM--LRYFHWHGCP-LKSLPSNI--HLEKLVLLEM 90
           G   +++I ++          D F  +  L          L  +      +L  L  L +
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111

Query: 91  PHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENI--GQLSSLGKLDLQKNNFERIPE 148
            ++ I+ L D  +    +     +  ++N   +  N   G       L L KN  + I  
Sbjct: 112 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171

Query: 149 SVIQLSKLGRLCLRYWERLQSLP-----KLPCKLHELDAHHCTALESL-SGLFSS 197
           S    ++L  L L     L+ LP             LD    T + SL S    +
Sbjct: 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASG-PVILDISR-TRIHSLPSYGLEN 224

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 33/143 (23%), Positives = 49/143 (34%), Gaps = 16/143 (11%)

Query: 56  PDTFRKMLRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLG 115
            +           +   L SLP N+   ++ +LE+  + +  L +     L       L 
Sbjct: 54  KECLINQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLPELPAS-LEY-----LD 106

Query: 116 QHLNTL-VLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLP 174
              N L  LPE    L     LD+  N    +PE    L  +         +L  LP+LP
Sbjct: 107 ACDNRLSTLPELPASLK---HLDVDNNQLTMLPELPALLEYIN---ADN-NQLTMLPELP 159

Query: 175 CKLHELDAHHCTALESLSGLFSS 197
             L  L   +   L  L  L  S
Sbjct: 160 TSLEVLSVRNN-QLTFLPELPES 181

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 6e-05
 Identities = 32/137 (23%), Positives = 48/137 (35%), Gaps = 18/137 (13%)

Query: 56  PDTFRKMLRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGI------LTR 108
           PD     +         L SLP     LE L   +   S + +L  S++ +      LT 
Sbjct: 75  PDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTM 134

Query: 109 TPNTPLGQHLNTLVLPENI-----GQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRY 163
            P  P    L  +    N         +SL  L ++ N    +PE       L  L +  
Sbjct: 135 LPELP--ALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE---LPESLEALDVST 189

Query: 164 WERLQSLPKLPCKLHEL 180
              L+SLP +P + H  
Sbjct: 190 -NLLESLPAVPVRNHHS 205

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 7/123 (5%)

Query: 76  LPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTR-TPNTPLGQHLNTLVLPENIGQLSSLG 134
           LP N +          ++ I            +       G++ N  V       ++   
Sbjct: 5   LPINNNFSLSQNSF--YNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFS 62

Query: 135 KLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGL 194
           +L L + N   +P+++    ++  L +     L SLP+LP  L  LDA     L +L  L
Sbjct: 63  ELQLNRLNLSSLPDNL--PPQITVLEITQ-NALISLPELPASLEYLDACDN-RLSTLPEL 118

Query: 195 FSS 197
            +S
Sbjct: 119 PAS 121

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 9/127 (7%)

Query: 54  LNPDTFRKM--LRYFHWHGCPLKSLPSNI--HLEKLVLLEMPHSNIQQLLDSVRGILTRT 109
           +    ++ +  L      G P++SL       L  L  L    +N+  L +   G L   
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 110 PNTPLGQ-HLNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQ-LSKLGRLCLRYW--- 164
               +    + +  LPE    L++L  LDL  N  + I  + ++ L ++  L L      
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 165 ERLQSLP 171
             +  + 
Sbjct: 187 NPMNFIQ 193

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 29/164 (17%)

Query: 53  HLNPDTFRKM--LRYFHWHGCPLKSLPSNI--HLEKLVLLEMPHSNIQQLLDSVRGILTR 108
            +    F  +  LR       P++S+PS     +  L+ L++      +L     G    
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK--KLEYISEGAFEG 194

Query: 109 TPNTPLGQHLNTLVLPEN-------IGQLSSLGKLDLQKNNFERIPESVIQ-LSKLGRLC 160
             N      L  L L          +  L  L +L++  N+F  I       LS L +L 
Sbjct: 195 LFN------LKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 161 LRYWERLQSLPK-----LPCKLHELDAHHCTALESLS-GLFSSF 198
           +    ++  + +     L   L EL+  H   L SL   LF+  
Sbjct: 249 VMN-SQVSLIERNAFDGLA-SLVELNLAHN-NLSSLPHDLFTPL 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 31/167 (18%)

Query: 53  HLNPDTFRKM--LRYFHWHGCPLKSLPSNI--HLEKLVLLEMPHSNIQQLLDSV-RGILT 107
            +    F  +  L+       P++S+PS     +  L  L++        L  +  G   
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK---RLSYISEGAFE 182

Query: 108 RTPNTPLGQHLNTLVLPEN-------IGQLSSLGKLDLQKNNFERIPESVIQ-LSKLGRL 159
              N      L  L L          +  L  L +LDL  N+   I     Q L  L +L
Sbjct: 183 GLSN------LRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236

Query: 160 CLRYWERLQSLPK-----LPCKLHELDAHHCTALESLS-GLFSSFEA 200
            +    ++Q + +     L   L E++  H   L  L   LF+    
Sbjct: 237 WMIQ-SQIQVIERNAFDNLQ-SLVEINLAHN-NLTLLPHDLFTPLHH 280

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 22/134 (16%)

Query: 73  LKSLPSNI--HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPEN---- 126
           ++  P+ +      +  + + ++ +  + ++                L T+ L  N    
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT--YLLTTIDLRFNKLTS 742

Query: 127 ------IGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQS---LPKLPCKL 177
                    L  L  +D+  N F   P   +  S+L    +R+    +    L + P  +
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802

Query: 178 HELDAHHCTALESL 191
                  C +L  L
Sbjct: 803 -----TTCPSLIQL 811

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 15/111 (13%), Positives = 31/111 (27%), Gaps = 10/111 (9%)

Query: 61  KMLRYFHWHGCPLKSLPSNIH---LEKLVLLEMPHSNIQQLLDSVRG-----ILTRTPNT 112
            +L         L SL  +     L  L  +++ ++                        
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787

Query: 113 PLGQHLNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRY 163
               +      P  I    SL +L +  N+  ++ E +    +L  L +  
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIAD 836

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 10/125 (8%)

Query: 54  LNPDTFRKM--LRYFHWHGCPLKSLPSNI--HLEKLVLLEMPHSNIQQLLDSVRGILTRT 109
           L    F+++  L         L++LP  +   L  L  L +  + ++ L   V   LT+ 
Sbjct: 76  LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135

Query: 110 PNTPLGQHLNTL-VLPENI-GQLSSLGKLDLQKNNFERIPESVI-QLSKLGRLCLRYWER 166
             T L    N L  LP+ +  +L+SL +L L  N  +R+PE    +L++L  L L    +
Sbjct: 136 --TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN-NQ 192

Query: 167 LQSLP 171
           L+ +P
Sbjct: 193 LKRVP 197

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 123 LPENIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLGRLCLRY 163
           +P+ + Q+ +L  LD   N     +P S+  L  L  +    
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 25/175 (14%), Positives = 60/175 (34%), Gaps = 11/175 (6%)

Query: 19  WLWHHEDSIKFLTSNAGRILIEGICLGMSKVKEIHLNPDTFRKMLRYFHWHGCPLKSLPS 78
            L     +++ +          G     + +  + L+ + F++ +    +       + S
Sbjct: 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243

Query: 79  -NIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTL-VLPENI-GQLSSLGK 135
             +     +     H+N +   +     L  +         + +  L +++    + L +
Sbjct: 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303

Query: 136 LDLQKNNFERIPESV-IQLSKLGRLCLRYWERLQSLP-----KLPCKLHELDAHH 184
           L L +N   +I ++    L+ L +L L     L S+       L  KL  LD  +
Sbjct: 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQ-NFLGSIDSRMFENLD-KLEVLDLSY 356

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 18/134 (13%)

Query: 73  LKSLPSNI--HLEKLVLLEMPHSN-IQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQ 129
           L +LP ++      L L      N +     +     TR   T L      L   +  G 
Sbjct: 22  LTALPPDLPKDTTILHL----SENLLYTFSLATLMPYTRL--TQLNLDRAELTKLQVDGT 75

Query: 130 LSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLP-----KLPCKLHELDAHH 184
           L  LG LDL  N  + +P     L  L  L + +  RL SLP      L  +L EL    
Sbjct: 76  LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLG-ELQELYLKG 133

Query: 185 CTALESL-SGLFSS 197
              L++L  GL + 
Sbjct: 134 -NELKTLPPGLLTP 146

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 32/134 (23%), Positives = 46/134 (34%), Gaps = 24/134 (17%)

Query: 53  HLNPDTFRKM--LRYFHWHGCPLKSLPSNI--HLEKLVLLEMPHSNIQQLLDSVRGILTR 108
            ++P TF  +  L   H   C L+ L   +   L  L  L +  + +Q L D        
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD---DTFRD 151

Query: 109 TPNTPLGQHLNTLVLPEN---------IGQLSSLGKLDLQKNNFERIPESVIQ-LSKLGR 158
             N      L  L L  N            L SL +L L +N    +     + L +L  
Sbjct: 152 LGN------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 159 LCLRYWERLQSLPK 172
           L L     L +LP 
Sbjct: 206 LYLFA-NNLSALPT 218

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 53  HLNPDTFRKM--LRYFHWHGCPLKSLPSNI--HLEKLVLLEMPHSNIQQLLDSVRGILTR 108
            +    ++ +  L      G P++SL       L  L  L    +N+  L +   G L  
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 109 TPNTPLGQ-HLNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQ-LSKLGRLCLR 162
                +    + +  LPE    L++L  LDL  N  + I  + ++ L ++  L L 
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 16/146 (10%), Positives = 41/146 (28%), Gaps = 36/146 (24%)

Query: 29  FLTSNAGRILIEGICLGMSKVKEIHL---------NPDTFRKM--LRYFHWHGCPLKSLP 77
           +L +N   +L +      S+V+ + L           +       L + +     +  + 
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185

Query: 78  SNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLD 137
             +   KL  L++  + +  +                                + +  + 
Sbjct: 186 GQVVFAKLKTLDLSSNKLAFM-------------------------GPEFQSAAGVTWIS 220

Query: 138 LQKNNFERIPESVIQLSKLGRLCLRY 163
           L+ N    I +++     L    LR 
Sbjct: 221 LRNNKLVLIEKALRFSQNLEHFDLRG 246

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	256
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.64
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.62
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.49
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.48
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.48
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.46
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.46
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.43
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.42
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.42
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.41
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.4
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.4
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.4
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.4
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.39
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.39
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.39
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.39
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.39
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.38
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.38
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.38
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.38
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.37
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.37
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.36
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.36
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.36
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.36
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.36
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.35
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.34
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.33
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.33
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.33
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.33
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.32
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.31
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.31
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.3
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.3
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.3
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.29
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.29
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.28
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.28
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.28
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.28
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.28
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.27
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.26
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.25
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.25
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.25
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.24
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.22
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.22
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.21
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.2
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.2
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.2
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.16
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.13
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.03
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.01
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.01
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.98
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.98
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.94
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.92
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.86
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.75
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.69
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.58
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.58
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.57
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.46
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.45
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.38
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.15
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.15
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.82
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.76
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.75
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.73
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.54
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.46
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.35
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.29
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.88
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.74
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.1
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.53
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	94.86
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	92.8
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	92.79
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.44
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	91.6
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	89.6
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	88.89
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	87.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	86.38

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.64  E-value=2.6e-16  Score=138.27  Aligned_cols=164  Identities=21%  Similarity=0.309  Sum_probs=115.0

Q ss_pred             CccceeEeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHH------h--
Q 043683           37 ILIEGICLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRG------I--  105 (256)
Q Consensus        37 ~~~~~~~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~------L--  105 (256)
                      ..+..+.+.-..+.  .+... +..+  |++|++++|.+..+|..+ .+++|++|++++|.++.++..+..      |  
T Consensus        81 ~~l~~L~L~~n~l~--~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP--QFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS--SCCSC-GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch--hcChh-hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            44454444333333  34332 3334  899999999988999888 899999999999988866333222      2  


Q ss_pred             -----cccCCCCchh---------hc--cCcc--------ccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEee
Q 043683          106 -----LTRTPNTPLG---------QH--LNTL--------VLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCL  161 (256)
Q Consensus       106 -----l~~lp~~~l~---------~~--L~~L--------~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l  161 (256)
                           ++.+|.. ++         ++  |+.|        .+|..++.+++|++|++++|+++.+|+.++.+++|++|++
T Consensus       158 ~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L  236 (328)
T 4fcg_A          158 RACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL  236 (328)
T ss_dssp             EEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred             CCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence                 2334432 11         11  3333        5677788888888888888888888888888888888888


Q ss_pred             ccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683          162 RYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTQY  204 (256)
Q Consensus       162 ~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l  204 (256)
                      ++|+..+.+|..   +++|++|++++|...+.+|..++++++++.+
T Consensus       237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L  282 (328)
T 4fcg_A          237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL  282 (328)
T ss_dssp             TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred             cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence            888877777765   7788888888888888888888777776654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.62  E-value=1.5e-16  Score=139.74  Aligned_cols=145  Identities=25%  Similarity=0.356  Sum_probs=116.2

Q ss_pred             HHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh----------------HHHHHHh------cccCCCCc
Q 043683           59 FRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL----------------LDSVRGI------LTRTPNTP  113 (256)
Q Consensus        59 f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l----------------~~~L~~L------l~~lp~~~  113 (256)
                      |.++  |++|++++|.+..+|..+ .+++|++|++++|++.+.                +++|+.|      ++.+|.. 
T Consensus       123 ~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-  201 (328)
T 4fcg_A          123 MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-  201 (328)
T ss_dssp             GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-
T ss_pred             HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh-
Confidence            4444  999999999998999888 899999999998754432                1223333      4445542 


Q ss_pred             hhhc--cCcc--------ccccccCCCCCCcEEEccCCCCc-cccccccCCCCCCEEeeccCcCCcccCCC---CCCCcE
Q 043683          114 LGQH--LNTL--------VLPENIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHE  179 (256)
Q Consensus       114 l~~~--L~~L--------~lp~~~~~l~~L~~L~l~~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~  179 (256)
                      ++.+  |+.|        .+|..++.+++|++|++++|++. .+|..++.+++|++|++++|+..+.+|..   +++|++
T Consensus       202 l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~  281 (328)
T 4fcg_A          202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK  281 (328)
T ss_dssp             GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred             hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence            3333  4444        57888999999999999987776 88999999999999999999999999976   899999


Q ss_pred             EeccCcccccccccchhchhhhhhc
Q 043683          180 LDAHHCTALESLSGLFSSFEARTQY  204 (256)
Q Consensus       180 L~l~~~~~l~~~p~~~~~l~~l~~l  204 (256)
                      |++++|+.++.+|..+++++++..+
T Consensus       282 L~L~~n~~~~~iP~~l~~L~~L~~l  306 (328)
T 4fcg_A          282 LDLRGCVNLSRLPSLIAQLPANCII  306 (328)
T ss_dssp             EECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred             EeCCCCCchhhccHHHhhccCceEE
Confidence            9999999999999999998877654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.49  E-value=2.1e-14  Score=139.50  Aligned_cols=129  Identities=16%  Similarity=0.091  Sum_probs=84.9

Q ss_pred             ccccccCCCCCCcEEEccCCCCc-cccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhc
Q 043683          122 VLPENIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSS  197 (256)
Q Consensus       122 ~lp~~~~~l~~L~~L~l~~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~  197 (256)
                      .+|..++.+++|++||+++|+++ .+|.+++++++|+.|++++|...+.+|..   +++|+.|++++|...+.+|..++.
T Consensus       623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~  702 (768)
T 3rgz_A          623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA  702 (768)
T ss_dssp             ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence            35667788899999999999998 88999999999999999998777788876   889999999999888899999998


Q ss_pred             hhhhhhcc----CC-cccHHHHHHhHHHH-HhhhhhhhccccccCceecccCCccccceeecc
Q 043683          198 FEARTQYF----DL-RILEDALQETQLLE-AALWKEILVCLCSFGFCMKCILNQIHNTYSIKC  254 (256)
Q Consensus       198 l~~l~~l~----~l-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~  254 (256)
                      ++.++.+.    .+ ..+|..- ..+... ..+..+...|...  .. .|.++...+|..+.+
T Consensus       703 l~~L~~L~ls~N~l~g~iP~~~-~~~~~~~~~~~gN~~Lcg~~--l~-~C~~~~~~~~~~~~~  761 (768)
T 3rgz_A          703 LTMLTEIDLSNNNLSGPIPEMG-QFETFPPAKFLNNPGLCGYP--LP-RCDPSNADGYAHHQR  761 (768)
T ss_dssp             CCCCSEEECCSSEEEEECCSSS-SGGGSCGGGGCSCTEEESTT--SC-CCCSCC---------
T ss_pred             CCCCCEEECcCCcccccCCCch-hhccCCHHHhcCCchhcCCC--Cc-CCCCCccCCCCCCCC
Confidence            88877554    12 2233221 111111 1122233445322  22 566777777876654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.48  E-value=4.2e-14  Score=122.10  Aligned_cols=157  Identities=20%  Similarity=0.176  Sum_probs=93.1

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCc
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNT  120 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~  120 (256)
                      ++++++....+.+..|.++  |++|++++|.++.+|....+++|++|++++|.++.+...+.. +..+..+.++++ ++.
T Consensus        36 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-l~~L~~L~l~~N~l~~  114 (290)
T 1p9a_G           36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT-LPALTVLDVSFNRLTS  114 (290)
T ss_dssp             EECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTT-CTTCCEEECCSSCCCC
T ss_pred             EEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhcc-CCCCCEEECCCCcCcc
Confidence            3444444444444445544  666666666665555433555666666666655433110000 000000000000 000


Q ss_pred             cccccccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccch
Q 043683          121 LVLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGLF  195 (256)
Q Consensus       121 L~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~~  195 (256)
                       ..|..|+.+++|++|++++|+++.+|+ .+..+++|+.|++++ +.++.+|..    +++|++|++++|. +..+|..+
T Consensus       115 -l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~  191 (290)
T 1p9a_G          115 -LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGF  191 (290)
T ss_dssp             -CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred             -cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCCCc-CCccChhh
Confidence             113567888999999999999998875 467889999999998 457788764    6789999998864 77888887


Q ss_pred             hchhhhhhc
Q 043683          196 SSFEARTQY  204 (256)
Q Consensus       196 ~~l~~l~~l  204 (256)
                      .....++.+
T Consensus       192 ~~~~~L~~l  200 (290)
T 1p9a_G          192 FGSHLLPFA  200 (290)
T ss_dssp             TTTCCCSEE
T ss_pred             cccccCCeE
Confidence            766555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.48  E-value=1.3e-13  Score=116.08  Aligned_cols=136  Identities=24%  Similarity=0.310  Sum_probs=97.1

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccC
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLN  119 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~  119 (256)
                      ++++++....+.+..|.++  |++|++++|.++.+++. + .+++|++|++++|.++.+                     
T Consensus        40 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------------   98 (251)
T 3m19_A           40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL---------------------   98 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC---------------------
T ss_pred             EEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc---------------------
Confidence            4555555555666666666  88888888888877765 5 788888888888887653                     


Q ss_pred             ccccccccCCCCCCcEEEccCCCCcccccc-ccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccc
Q 043683          120 TLVLPENIGQLSSLGKLDLQKNNFERIPES-VIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGL  194 (256)
Q Consensus       120 ~L~lp~~~~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~  194 (256)
                         .+..++.+++|++|++++|+++.+|+. +..+++|++|++++| .++.+|..    +++|++|++++|......+..
T Consensus        99 ---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  174 (251)
T 3m19_A           99 ---PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA  174 (251)
T ss_dssp             ---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             ---ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence               134567788888888888888887754 578888888888874 56677653    678888888887543333335


Q ss_pred             hhchhhhhhc
Q 043683          195 FSSFEARTQY  204 (256)
Q Consensus       195 ~~~l~~l~~l  204 (256)
                      +..+++++.+
T Consensus       175 ~~~l~~L~~L  184 (251)
T 3m19_A          175 FDRLGKLQTI  184 (251)
T ss_dssp             TTTCTTCCEE
T ss_pred             HhCCCCCCEE
Confidence            6666666544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.46  E-value=5.4e-14  Score=121.44  Aligned_cols=136  Identities=21%  Similarity=0.259  Sum_probs=100.5

Q ss_pred             hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEcc
Q 043683           63 LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQ  139 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~  139 (256)
                      +++|++++|.++.+++ .+ .+++|++|++++|.++.+... .. +..+..+.++++ ++  .+|..+..+++|++|+++
T Consensus        33 l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~-l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~  108 (290)
T 1p9a_G           33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GT-LPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVS  108 (290)
T ss_dssp             CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SC-CTTCCEEECCSSCCS--SCCCCTTTCTTCCEEECC
T ss_pred             CCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CC-CCcCCEEECCCCcCC--cCchhhccCCCCCEEECC
Confidence            8999999999998865 46 899999999999998865110 00 111111111111 22  447778899999999999


Q ss_pred             CCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccc-hhchhhhhhc
Q 043683          140 KNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGL-FSSFEARTQY  204 (256)
Q Consensus       140 ~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~-~~~l~~l~~l  204 (256)
                      +|+++.+| ..+..+++|++|++++| .++.+|..    +++|+.|++++|. +..+|.. +..+++++.+
T Consensus       109 ~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L  177 (290)
T 1p9a_G          109 FNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTL  177 (290)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEE
T ss_pred             CCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEE
Confidence            99999888 56899999999999984 57777764    6899999999875 6677664 4666666644

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.46  E-value=2e-13  Score=113.82  Aligned_cols=98  Identities=21%  Similarity=0.268  Sum_probs=50.8

Q ss_pred             hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |++|++++|.+..+++ .+ .+++|++|++++|.++.+                        .+..+..+++|++|++++
T Consensus        42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i------------------------~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL------------------------PVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------------------------CTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc------------------------ChhhcccCCCcCEEECCC
Confidence            5666666666555532 34 566666666666665432                        012234555555555555


Q ss_pred             CCCcccccc-ccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCc
Q 043683          141 NNFERIPES-VIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHC  185 (256)
Q Consensus       141 n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~  185 (256)
                      |+++.+|.. +..+++|++|++++ +.+..+|..   +++|++|++++|
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN  145 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS
T ss_pred             CcCCccChhHhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCC
Confidence            555555432 34555555555554 334455543   455555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.43  E-value=6.7e-13  Score=112.98  Aligned_cols=157  Identities=24%  Similarity=0.349  Sum_probs=101.9

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc--ccCCccEEeCcCCcchhhHHHH-HHhcccCCCCchhhc-
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI--HLEKLVLLEMPHSNIQQLLDSV-RGILTRTPNTPLGQH-  117 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~--~l~~L~~L~L~~n~l~~l~~~L-~~Ll~~lp~~~l~~~-  117 (256)
                      ++++......+.+..|.++  |++|++++|.++.+|..+  .+++|++|++++|.++.+.... .. +..+..+.++++ 
T Consensus        42 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~  120 (270)
T 2o6q_A           42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ-LVNLAELRLDRNQ  120 (270)
T ss_dssp             EECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT-CSSCCEEECCSSC
T ss_pred             EECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc-ccCCCEEECCCCc
Confidence            4445554445555556555  888888888888887764  6888888888888876541100 00 001111111111 


Q ss_pred             cCccccccccCCCCCCcEEEccCCCCcccccc-ccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccc
Q 043683          118 LNTLVLPENIGQLSSLGKLDLQKNNFERIPES-VIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLS  192 (256)
Q Consensus       118 L~~L~lp~~~~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p  192 (256)
                      ++. ..+..++.+++|++|++++|.++.+|.. ++.+++|+.|++++| .+..+|..    +++|++|++++|. +..+|
T Consensus       121 l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~  197 (270)
T 2o6q_A          121 LKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKRVP  197 (270)
T ss_dssp             CCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSCCC
T ss_pred             cCe-eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCc-CCcCC
Confidence            111 1244578899999999999999988854 788999999999984 56777653    6889999999875 55565


Q ss_pred             c-chhchhhhhhc
Q 043683          193 G-LFSSFEARTQY  204 (256)
Q Consensus       193 ~-~~~~l~~l~~l  204 (256)
                      . .+..+++++.+
T Consensus       198 ~~~~~~l~~L~~L  210 (270)
T 2o6q_A          198 EGAFDSLEKLKML  210 (270)
T ss_dssp             TTTTTTCTTCCEE
T ss_pred             HHHhccccCCCEE
Confidence            5 46666666544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.42  E-value=3e-13  Score=127.02  Aligned_cols=131  Identities=22%  Similarity=0.255  Sum_probs=78.9

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccC
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLN  119 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~  119 (256)
                      +|++.+++..+.+..|.++  |++|++++|.++.+|++ | ++++|++|+|++|+++.+                     
T Consensus        57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l---------------------  115 (635)
T 4g8a_A           57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL---------------------  115 (635)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE---------------------
T ss_pred             EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC---------------------
Confidence            4444444444555555555  56666666665555543 3 556666666666655432                     


Q ss_pred             ccccccccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCccc--CCC---CCCCcEEeccCccccccccc
Q 043683          120 TLVLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSL--PKL---PCKLHELDAHHCTALESLSG  193 (256)
Q Consensus       120 ~L~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~l--p~~---l~~L~~L~l~~~~~l~~~p~  193 (256)
                         .+..|+++++|++|++++|+++.+|+ .++++++|++|++++|. +..+  |..   +++|++|++++|......|.
T Consensus       116 ---~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          116 ---ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             ---CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             ---CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccc
Confidence               12456778888888888888877764 57788888888887743 4433  333   67788888877654333445


Q ss_pred             chhchh
Q 043683          194 LFSSFE  199 (256)
Q Consensus       194 ~~~~l~  199 (256)
                      .+..+.
T Consensus       192 ~l~~L~  197 (635)
T 4g8a_A          192 DLRVLH  197 (635)
T ss_dssp             GGHHHH
T ss_pred             cccchh
Confidence            554443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.42  E-value=6.6e-13  Score=113.63  Aligned_cols=55  Identities=16%  Similarity=0.285  Sum_probs=31.8

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCcc-CCcc-ccCCccEEeCcCCc-chhh
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSL-PSNI-HLEKLVLLEMPHSN-IQQL   98 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~l-p~~~-~l~~L~~L~L~~n~-l~~l   98 (256)
                      +++++.....+.+..|.++  |++|++++|.++.+ |..+ .+++|++|++++|. ++.+
T Consensus        37 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~   96 (285)
T 1ozn_A           37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV   96 (285)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred             EEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc
Confidence            3444444444444455554  77777777776666 3345 66777777777775 5443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.41  E-value=4e-13  Score=122.11  Aligned_cols=150  Identities=23%  Similarity=0.344  Sum_probs=81.8

Q ss_pred             eeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh----HHH---HHHh-c------ccCCCC
Q 043683           51 EIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL----LDS---VRGI-L------TRTPNT  112 (256)
Q Consensus        51 ~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l----~~~---L~~L-l------~~lp~~  112 (256)
                      ...+....|.++  |++|++++|.++.+|+. | .+++|++|++++|.++.+    +.+   |+.| +      ..++.-
T Consensus       100 i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~  179 (440)
T 3zyj_A          100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG  179 (440)
T ss_dssp             CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred             CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc
Confidence            333444455555  77777777777777664 4 677777777777776654    112   2221 1      111111


Q ss_pred             chhhc--cCcc--------ccccccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCcccCCC----CCCC
Q 043683          113 PLGQH--LNTL--------VLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSLPKL----PCKL  177 (256)
Q Consensus       113 ~l~~~--L~~L--------~lp~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L  177 (256)
                      .+.++  |+.|        .+| .+..+++|++|++++|+++.+ |..+.++++|+.|++++| .+..++..    +++|
T Consensus       180 ~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L  257 (440)
T 3zyj_A          180 AFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSL  257 (440)
T ss_dssp             TTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTC
T ss_pred             hhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCC
Confidence            11111  2222        233 355666677777777776655 456667777777777763 34444432    5677


Q ss_pred             cEEeccCccccccccc-chhchhhhhh
Q 043683          178 HELDAHHCTALESLSG-LFSSFEARTQ  203 (256)
Q Consensus       178 ~~L~l~~~~~l~~~p~-~~~~l~~l~~  203 (256)
                      ++|++++|. +..+|. .+..+.+++.
T Consensus       258 ~~L~L~~N~-l~~~~~~~~~~l~~L~~  283 (440)
T 3zyj_A          258 VEINLAHNN-LTLLPHDLFTPLHHLER  283 (440)
T ss_dssp             CEEECTTSC-CCCCCTTTTSSCTTCCE
T ss_pred             CEEECCCCC-CCccChhHhccccCCCE
Confidence            777777764 444443 4455555443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.41  E-value=4.2e-14  Score=123.26  Aligned_cols=147  Identities=16%  Similarity=0.272  Sum_probs=102.8

Q ss_pred             HHHHhh--hhhhhccCCCCC-ccCCcc-ccCCccEEeCcCCcchhh----HHHHHHh---------cc-cCCCCchhhc-
Q 043683           57 DTFRKM--LRYFHWHGCPLK-SLPSNI-HLEKLVLLEMPHSNIQQL----LDSVRGI---------LT-RTPNTPLGQH-  117 (256)
Q Consensus        57 ~~f~~l--L~~L~ls~n~l~-~lp~~~-~l~~L~~L~L~~n~l~~l----~~~L~~L---------l~-~lp~~~l~~~-  117 (256)
                      ..|.++  |++|++++|.+. .+|..+ .+++|++|++++|.+++.    +.++..|         +. .+|.. ++.+ 
T Consensus        95 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~  173 (313)
T 1ogq_A           95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFS  173 (313)
T ss_dssp             GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCC
T ss_pred             hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-Hhhhh
Confidence            345555  888888888876 677777 888888888888887743    2222222         11 23321 2221 


Q ss_pred             --cCcc---------ccccccCCCCCCcEEEccCCCCc-cccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEecc
Q 043683          118 --LNTL---------VLPENIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAH  183 (256)
Q Consensus       118 --L~~L---------~lp~~~~~l~~L~~L~l~~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~  183 (256)
                        |+.|         .+|..++.+. |++|++++|.++ .+|..++.+++|+.|++++|.....+|..  +++|++|+++
T Consensus       174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls  252 (313)
T 1ogq_A          174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR  252 (313)
T ss_dssp             TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECC
T ss_pred             hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECc
Confidence              3333         4677777776 888888888887 55677889999999999986654455554  7889999999


Q ss_pred             Ccccccccccchhchhhhhhcc
Q 043683          184 HCTALESLSGLFSSFEARTQYF  205 (256)
Q Consensus       184 ~~~~l~~~p~~~~~l~~l~~l~  205 (256)
                      +|...+.+|..+..+++++.+.
T Consensus       253 ~N~l~~~~p~~l~~l~~L~~L~  274 (313)
T 1ogq_A          253 NNRIYGTLPQGLTQLKFLHSLN  274 (313)
T ss_dssp             SSCCEECCCGGGGGCTTCCEEE
T ss_pred             CCcccCcCChHHhcCcCCCEEE
Confidence            9876668898888887777553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.40  E-value=2.4e-13  Score=124.07  Aligned_cols=77  Identities=29%  Similarity=0.400  Sum_probs=51.4

Q ss_pred             ccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccccccccc-chhchh
Q 043683          126 NIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSG-LFSSFE  199 (256)
Q Consensus       126 ~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~-~~~~l~  199 (256)
                      .+..+++|++|++++|.++.+ |..+.++++|+.|++++|. +..++..    +++|++|++++|. +..+|. .+..+.
T Consensus       213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~  290 (452)
T 3zyi_A          213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLR  290 (452)
T ss_dssp             CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCT
T ss_pred             cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCc-CCccChHHhcccc
Confidence            356677777777777777755 4567788888888888744 4554332    6788888888875 445543 455565


Q ss_pred             hhhhc
Q 043683          200 ARTQY  204 (256)
Q Consensus       200 ~l~~l  204 (256)
                      +++.+
T Consensus       291 ~L~~L  295 (452)
T 3zyi_A          291 YLVEL  295 (452)
T ss_dssp             TCCEE
T ss_pred             CCCEE
Confidence            55543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.40  E-value=8.1e-13  Score=109.44  Aligned_cols=114  Identities=24%  Similarity=0.327  Sum_probs=61.4

Q ss_pred             hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      +++|++++|.++.+|+. | .+++|++|++++|.++.+                        .|..|.++++|++|++++
T Consensus        34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~------------------------~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL------------------------APDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE------------------------CTTTTTTCSSCCEEECCS
T ss_pred             CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc------------------------CHHHhhCCcCCCEEECCC
Confidence            56666666666666553 4 566666666666665532                        244555566666666666


Q ss_pred             CCCcccccc-ccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccc-cchhchhhhh
Q 043683          141 NNFERIPES-VIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLS-GLFSSFEART  202 (256)
Q Consensus       141 n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p-~~~~~l~~l~  202 (256)
                      |+++.+|.. +..+++|++|++++| .+..++..    +++|++|++++|. +..++ ..+..+.+++
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~  155 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQ  155 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCC
T ss_pred             CcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCC
Confidence            666655543 455666666666653 34444322    4556666666544 33333 2344444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.40  E-value=2.2e-12  Score=105.39  Aligned_cols=117  Identities=24%  Similarity=0.344  Sum_probs=67.0

Q ss_pred             eCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCc
Q 043683           45 GMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNT  120 (256)
Q Consensus        45 ~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~  120 (256)
                      +++++....+....|.++  |++|++++|.++.+|.. + .+++|++|++++|.++.+                      
T Consensus        34 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------   91 (208)
T 2o6s_A           34 DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL----------------------   91 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----------------------
T ss_pred             EcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc----------------------
Confidence            333333334444444444  66666666666666554 3 566666666666665432                      


Q ss_pred             cccccccCCCCCCcEEEccCCCCcccccc-ccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcc
Q 043683          121 LVLPENIGQLSSLGKLDLQKNNFERIPES-VIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCT  186 (256)
Q Consensus       121 L~lp~~~~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~  186 (256)
                        .+..++.+++|++|++++|+++.+|+. +..+++|++|++++| .+..+|..    +++|++|++++|+
T Consensus        92 --~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           92 --PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             --CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             --CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence              122346666777777777777666543 566677777777663 34555542    5667777776664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.40  E-value=2.5e-13  Score=123.53  Aligned_cols=159  Identities=17%  Similarity=0.257  Sum_probs=105.3

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhH-------HHHHHh------c
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLL-------DSVRGI------L  106 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~-------~~L~~L------l  106 (256)
                      ++++.++...+....|.++  |++|++++|.+..++.. | .+++|++|++++|+++.+.       ++|+.|      +
T Consensus        69 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i  148 (440)
T 3zyj_A           69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI  148 (440)
T ss_dssp             EECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred             EEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence            5556655556666667776  99999999999888754 5 8999999999999888662       223332      3


Q ss_pred             ccCCCCchhhc--cCcc---------ccc-cccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCC-C
Q 043683          107 TRTPNTPLGQH--LNTL---------VLP-ENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPK-L  173 (256)
Q Consensus       107 ~~lp~~~l~~~--L~~L---------~lp-~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~  173 (256)
                      ..++...+..+  |+.|         .++ ..|.++++|++|++++|+++.+| .+..+++|+.|++++| .+..++. .
T Consensus       149 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~  226 (440)
T 3zyj_A          149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGN-HLSAIRPGS  226 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTS-CCCEECTTT
T ss_pred             cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCC-ccCccChhh
Confidence            33333223322  3333         122 35677888888888888888777 4777888888888875 4555533 2


Q ss_pred             ---CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683          174 ---PCKLHELDAHHCTALESLSGLFSSFEARTQY  204 (256)
Q Consensus       174 ---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l  204 (256)
                         +++|++|++++|......+..+..+++|+.+
T Consensus       227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  260 (440)
T 3zyj_A          227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI  260 (440)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred             hccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence               6788888888776544445566666666543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.39  E-value=3.8e-13  Score=116.23  Aligned_cols=141  Identities=25%  Similarity=0.280  Sum_probs=93.0

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhH-----H---HHHHh------cccCCCCchhhc--cCcc----
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLL-----D---SVRGI------LTRTPNTPLGQH--LNTL----  121 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~-----~---~L~~L------l~~lp~~~l~~~--L~~L----  121 (256)
                      |++|++++|.+..+|..+ .+++|++|++++|.++.+.     .   +|+.|      +...+.-.++.+  |+.|    
T Consensus        80 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  159 (306)
T 2z66_A           80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG  159 (306)
T ss_dssp             CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred             cCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence            777777777777777767 7777777777777766541     1   12221      111111112211  3333    


Q ss_pred             ------ccccccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccc
Q 043683          122 ------VLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALES  190 (256)
Q Consensus       122 ------~lp~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~  190 (256)
                            .+|..++.+++|++|++++|+++.+ |..+..+++|+.|++++| .+..++..    +++|++|++++|.....
T Consensus       160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCccc
Confidence                  2577788888999999998888866 567888899999999884 46666653    67899999998876666


Q ss_pred             cccchhch-hhhhhc
Q 043683          191 LSGLFSSF-EARTQY  204 (256)
Q Consensus       191 ~p~~~~~l-~~l~~l  204 (256)
                      .|..+..+ +++..+
T Consensus       239 ~~~~~~~~~~~L~~L  253 (306)
T 2z66_A          239 KKQELQHFPSSLAFL  253 (306)
T ss_dssp             SSSSCCCCCTTCCEE
T ss_pred             CHHHHHhhhccCCEE
Confidence            67676665 355543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.39  E-value=2.8e-13  Score=119.57  Aligned_cols=134  Identities=17%  Similarity=0.227  Sum_probs=77.3

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccC
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLN  119 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~  119 (256)
                      +++++++...+....|.++  |++|++++|.++.+++. + .+++|++|++++|.++.+                     
T Consensus        57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------------  115 (353)
T 2z80_A           57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL---------------------  115 (353)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC---------------------
T ss_pred             EECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC---------------------
Confidence            3444444444444455555  77777777776666543 5 677777777777776643                     


Q ss_pred             ccccccc-cCCCCCCcEEEccCCCCccccc--cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccc
Q 043683          120 TLVLPEN-IGQLSSLGKLDLQKNNFERIPE--SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLS  192 (256)
Q Consensus       120 ~L~lp~~-~~~l~~L~~L~l~~n~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p  192 (256)
                          |.. ++.+++|++|++++|+++.+|.  .+..+++|++|++++|+.++.++..    +++|++|++++|......|
T Consensus       116 ----~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (353)
T 2z80_A          116 ----SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP  191 (353)
T ss_dssp             ----CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             ----CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence                322 5566666666666666666654  4566666666666665445555432    4556666666655434445


Q ss_pred             cchhchhhhh
Q 043683          193 GLFSSFEART  202 (256)
Q Consensus       193 ~~~~~l~~l~  202 (256)
                      ..++.+++++
T Consensus       192 ~~l~~l~~L~  201 (353)
T 2z80_A          192 KSLKSIQNVS  201 (353)
T ss_dssp             TTTTTCSEEE
T ss_pred             HHHhccccCC
Confidence            5555544444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.39  E-value=7e-13  Score=120.92  Aligned_cols=159  Identities=16%  Similarity=0.228  Sum_probs=89.2

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh----H---HHHHHh------c
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL----L---DSVRGI------L  106 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l----~---~~L~~L------l  106 (256)
                      ++++++....+.+..|.++  |++|++++|.++.+++. | .+++|++|+|++|.++.+    +   ++|+.|      +
T Consensus        80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  159 (452)
T 3zyi_A           80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI  159 (452)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC
T ss_pred             EECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc
Confidence            4445444444555555555  66666666666655533 4 566666666666665544    1   122222      2


Q ss_pred             ccCCCCchhhc--cCcc---------ccc-cccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCC-C
Q 043683          107 TRTPNTPLGQH--LNTL---------VLP-ENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPK-L  173 (256)
Q Consensus       107 ~~lp~~~l~~~--L~~L---------~lp-~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~  173 (256)
                      ..+|...+..+  |+.|         .++ ..+..+++|++|++++|+++.+| .+..+.+|+.|++++|. +..++. .
T Consensus       160 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~  237 (452)
T 3zyi_A          160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNH-FPEIRPGS  237 (452)
T ss_dssp             CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSC-CSEECGGG
T ss_pred             ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCc-CcccCccc
Confidence            22222212222  2222         122 24667778888888888877776 56777788888888744 444433 2


Q ss_pred             ---CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683          174 ---PCKLHELDAHHCTALESLSGLFSSFEARTQY  204 (256)
Q Consensus       174 ---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l  204 (256)
                         +++|++|++++|......|..+..+.+++.+
T Consensus       238 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  271 (452)
T 3zyi_A          238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL  271 (452)
T ss_dssp             GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence               6778888887766544445566666655543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.39  E-value=3.3e-13  Score=114.97  Aligned_cols=159  Identities=24%  Similarity=0.360  Sum_probs=94.0

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh----HHH---HHHh------c
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL----LDS---VRGI------L  106 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l----~~~---L~~L------l  106 (256)
                      ++++++....+....|.++  |++|++++|.++.+++. + .+++|++|++++|.++.+    +.+   |+.|      +
T Consensus        33 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  112 (276)
T 2z62_A           33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL  112 (276)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCc
Confidence            4445555445555556555  77777777777777653 5 677777777777777654    122   2222      2


Q ss_pred             ccCCCCchhhc--cCcc----------ccccccCCCCCCcEEEccCCCCcccc-ccccCCCCCC----EEeeccCcCCcc
Q 043683          107 TRTPNTPLGQH--LNTL----------VLPENIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLG----RLCLRYWERLQS  169 (256)
Q Consensus       107 ~~lp~~~l~~~--L~~L----------~lp~~~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~----~L~l~~~~~l~~  169 (256)
                      ..++...++.+  |+.|          .+|..++.+++|++|++++|+++.++ ..+..+.+|+    .|++++ +.+..
T Consensus       113 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~-n~l~~  191 (276)
T 2z62_A          113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNF  191 (276)
T ss_dssp             CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS-SCCCE
T ss_pred             cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC-Ccccc
Confidence            22222222222  2222          35677777777777777777777665 3555555555    677776 34556


Q ss_pred             cCCC---CCCCcEEeccCcccccccccc-hhchhhhhhc
Q 043683          170 LPKL---PCKLHELDAHHCTALESLSGL-FSSFEARTQY  204 (256)
Q Consensus       170 lp~~---l~~L~~L~l~~~~~l~~~p~~-~~~l~~l~~l  204 (256)
                      +|..   ..+|++|++++|. +..+|.. +..+++++.+
T Consensus       192 ~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  229 (276)
T 2z62_A          192 IQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKI  229 (276)
T ss_dssp             ECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEE
T ss_pred             cCccccCCCcccEEECCCCc-eeecCHhHhcccccccEE
Confidence            6554   4478899998876 5566554 4666666544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.39  E-value=8.8e-13  Score=109.23  Aligned_cols=119  Identities=21%  Similarity=0.257  Sum_probs=97.7

Q ss_pred             EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCcc-CCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhcc
Q 043683           43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSL-PSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHL  118 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~l-p~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L  118 (256)
                      .+++++++...+.+..|.++  |++|++++|.++.+ |..| .+++|++|+|++|.++.+                    
T Consensus        36 ~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l--------------------   95 (220)
T 2v9t_B           36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL--------------------   95 (220)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC--------------------
T ss_pred             EEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc--------------------
Confidence            34556666566666677776  99999999999988 5567 999999999999998753                    


Q ss_pred             Ccccccc-ccCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccc
Q 043683          119 NTLVLPE-NIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTA  187 (256)
Q Consensus       119 ~~L~lp~-~~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~  187 (256)
                           |. .|..+++|++|++++|+++.++ ..+..+++|+.|++++ +.+..++..    +++|++|++++|+.
T Consensus        96 -----~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           96 -----PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             -----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             -----CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence                 43 4688999999999999999775 6799999999999998 457777753    78999999998763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.38  E-value=2.1e-13  Score=116.32  Aligned_cols=139  Identities=24%  Similarity=0.362  Sum_probs=84.3

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHH-HHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEcc
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDS-VRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQ  139 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~-L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~  139 (256)
                      |++|++++|.+..++ .+ .+++|++|++++|.++++.+. +.. +..+..+.++++ ++. ..+..++.+++|++|+++
T Consensus        65 L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~  141 (272)
T 3rfs_A           65 VRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDK-LTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLA  141 (272)
T ss_dssp             CCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred             CcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcC-CcCCCEEECCCCcCCc-cCHHHhccCCCCCEEECC
Confidence            666666666666554 44 666666666666665543110 000 000011111111 110 123446888999999999


Q ss_pred             CCCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccchhchhhhhhcc
Q 043683          140 KNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGLFSSFEARTQYF  205 (256)
Q Consensus       140 ~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l~  205 (256)
                      +|+++.+|+ .++.+++|+.|++++|. +..+|..    +++|++|++++|......|..++.+++++.+.
T Consensus       142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  211 (272)
T 3rfs_A          142 HNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW  211 (272)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEE
Confidence            999998875 46889999999999854 6666653    78899999998764444444567776666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.38  E-value=2e-13  Score=131.95  Aligned_cols=110  Identities=19%  Similarity=0.255  Sum_probs=91.4

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN  141 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n  141 (256)
                      |++|++++|.+..+|..+ .+++|++|+|++|.|+.                         +|.+|+.+++|++|+|++|
T Consensus       226 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~-------------------------lp~~~~~l~~L~~L~Ls~N  280 (727)
T 4b8c_D          226 WHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTE-------------------------LPAEIKNLSNLRVLDLSHN  280 (727)
T ss_dssp             CCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSC-------------------------CCGGGGGGTTCCEEECTTS
T ss_pred             CcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcc-------------------------cChhhhCCCCCCEEeCcCC
Confidence            777778777777777776 77778888888777763                         4888899999999999999


Q ss_pred             CCccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhch
Q 043683          142 NFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSF  198 (256)
Q Consensus       142 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l  198 (256)
                      .++.+|..++.+++|++|+|++| .++.+|..   +++|++|++++|...+.+|..+..+
T Consensus       281 ~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~  339 (727)
T 4b8c_D          281 RLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK  339 (727)
T ss_dssp             CCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred             cCCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence            99999999999999999999984 57899875   7899999999988666777777543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.38  E-value=9.4e-13  Score=112.25  Aligned_cols=125  Identities=27%  Similarity=0.338  Sum_probs=88.7

Q ss_pred             hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHH-HHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEc
Q 043683           63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDS-VRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDL  138 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~-L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l  138 (256)
                      |++|++++|.++.+|+. + .+++|++|++++|.++.+.+. +.. +..+..+.++++ ++. ..+..++.+++|++|++
T Consensus        87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A           87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK-LTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc-CCCCCEEECCCCccCc-cCHHHhccCccCCEEEC
Confidence            89999999999888876 4 789999999999988765211 111 111111111111 111 12344688999999999


Q ss_pred             cCCCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccc
Q 043683          139 QKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALES  190 (256)
Q Consensus       139 ~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~  190 (256)
                      ++|+++.+|+ .++.+++|++|++++|. +..+|..    +++|++|++++|+....
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCcccc
Confidence            9999998875 46899999999999855 6666653    78999999999875443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.38  E-value=9.6e-13  Score=123.54  Aligned_cols=118  Identities=24%  Similarity=0.258  Sum_probs=99.3

Q ss_pred             hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      +++|++++|.|+.+|+. | ++++|++|+|++|+|+.+                        .|.+|+++++|++|+|++
T Consensus        54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i------------------------~~~~f~~L~~L~~L~Ls~  109 (635)
T 4g8a_A           54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------------------------EDGAYQSLSHLSTLILTG  109 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE------------------------CTTTTTTCTTCCEEECTT
T ss_pred             CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc------------------------ChhHhcCCCCCCEEEccC
Confidence            89999999999999864 7 999999999999998764                        245689999999999999


Q ss_pred             CCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccccc-ccccchhchhhhhhcc
Q 043683          141 NNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALE-SLSGLFSSFEARTQYF  205 (256)
Q Consensus       141 n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~-~~p~~~~~l~~l~~l~  205 (256)
                      |+++.+|+ .|.++++|++|++++| .+..+|..    +++|++|++++|.... .+|..++.++.++.+.
T Consensus       110 N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  179 (635)
T 4g8a_A          110 NPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD  179 (635)
T ss_dssp             CCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             CcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc
Confidence            99999985 6899999999999985 57778764    7899999999976432 4577778777776543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.37  E-value=2e-12  Score=105.67  Aligned_cols=117  Identities=27%  Similarity=0.400  Sum_probs=95.5

Q ss_pred             hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      +++|++++|.++.+|+. + .+++|++|++++|+++.+                        .+..+..+++|++|++++
T Consensus        30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL------------------------PNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC------------------------CTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc------------------------ChhhcCCCCCcCEEECCC
Confidence            89999999999999876 5 899999999999998753                        133468899999999999


Q ss_pred             CCCcccccc-ccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccccccccc-chhchhhhhhcc
Q 043683          141 NNFERIPES-VIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSG-LFSSFEARTQYF  205 (256)
Q Consensus       141 n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~-~~~~l~~l~~l~  205 (256)
                      |+++.+|.. ++.+++|++|++++| .+..+|..    +++|++|++++|. +..+|. .+..+++++.+.
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~  154 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIW  154 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEE
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEE
Confidence            999988854 789999999999985 57777763    7899999999976 555555 467777766543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.37  E-value=1.8e-12  Score=107.88  Aligned_cols=120  Identities=21%  Similarity=0.301  Sum_probs=100.6

Q ss_pred             EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhcc
Q 043683           43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHL  118 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L  118 (256)
                      .++++++....+.+..|.++  |++|++++|.++.+|.. + .+++|++|+|++|.++.+                    
T Consensus        44 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l--------------------  103 (229)
T 3e6j_A           44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL--------------------  103 (229)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--------------------
T ss_pred             EEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc--------------------
Confidence            35556666666666667776  99999999999999976 4 899999999999998753                    


Q ss_pred             CccccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccc
Q 043683          119 NTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTA  187 (256)
Q Consensus       119 ~~L~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~  187 (256)
                          .+..+..+++|++|++++|+++.+|..+..+++|+.|++++ +.+..+|..    +++|+.|++++|+.
T Consensus       104 ----~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          104 ----PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             ----CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             ----ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence                13446889999999999999999999999999999999998 567788754    78999999998764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.36  E-value=2.2e-12  Score=106.83  Aligned_cols=117  Identities=14%  Similarity=0.180  Sum_probs=71.8

Q ss_pred             hhhhhccCCCCCccCC-c-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEcc
Q 043683           63 LRYFHWHGCPLKSLPS-N-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ  139 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~-~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~  139 (256)
                      +++|++++|.++.+++ . | .+++|++|++++|.++.+                        .+..|+.+++|++|+++
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i------------------------~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI------------------------EEGAFEGASGVNEILLT   89 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE------------------------CTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE------------------------CHHHhCCCCCCCEEECC
Confidence            5677777777776643 2 4 677777777777776643                        13355667777777777


Q ss_pred             CCCCccccc-cccCCCCCCEEeeccCcCCcccC-CC---CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683          140 KNNFERIPE-SVIQLSKLGRLCLRYWERLQSLP-KL---PCKLHELDAHHCTALESLSGLFSSFEARTQY  204 (256)
Q Consensus       140 ~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp-~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l  204 (256)
                      +|+++.+|+ .++.+++|++|++++|. +..++ ..   +++|++|++++|......|..+..+++++.+
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  158 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL  158 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence            777776654 46667777777777633 44443 22   5667777777655333335566665555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.36  E-value=4.4e-13  Score=115.79  Aligned_cols=159  Identities=19%  Similarity=0.231  Sum_probs=101.6

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCcc---CCcc-ccCCccEEeCcCCcchhh------HHHHHHh------
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSL---PSNI-HLEKLVLLEMPHSNIQQL------LDSVRGI------  105 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~l---p~~~-~l~~L~~L~L~~n~l~~l------~~~L~~L------  105 (256)
                      +++++.....+....|.++  |++|++++|.++.+   |..+ .+++|++|++++|.++.+      +++|+.|      
T Consensus        33 L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~  112 (306)
T 2z66_A           33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN  112 (306)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE
T ss_pred             EECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc
Confidence            4555555556666667666  89999999988765   4555 789999999999988765      2233333      


Q ss_pred             cccCCCC-chhhc--cCcc---------ccccccCCCCCCcEEEccCCCCcc--ccccccCCCCCCEEeeccCcCCccc-
Q 043683          106 LTRTPNT-PLGQH--LNTL---------VLPENIGQLSSLGKLDLQKNNFER--IPESVIQLSKLGRLCLRYWERLQSL-  170 (256)
Q Consensus       106 l~~lp~~-~l~~~--L~~L---------~lp~~~~~l~~L~~L~l~~n~l~~--lp~~i~~l~~L~~L~l~~~~~l~~l-  170 (256)
                      +..++.. .+..+  |+.|         ..|..++.+++|++|++++|.++.  +|..+..+++|++|++++|. +..+ 
T Consensus       113 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~  191 (306)
T 2z66_A          113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLS  191 (306)
T ss_dssp             EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEEC
T ss_pred             ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcC
Confidence            2333321 12222  3433         345557777888888888887764  67777888888888888754 4555 


Q ss_pred             CCC---CCCCcEEeccCcccccccccchhchhhhhh
Q 043683          171 PKL---PCKLHELDAHHCTALESLSGLFSSFEARTQ  203 (256)
Q Consensus       171 p~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~  203 (256)
                      |..   +++|++|++++|......+..+..+.+++.
T Consensus       192 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  227 (306)
T 2z66_A          192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  227 (306)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred             HHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence            333   677888888876533333335555555553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.36  E-value=1.9e-12  Score=108.93  Aligned_cols=119  Identities=25%  Similarity=0.321  Sum_probs=96.7

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccC
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLN  119 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~  119 (256)
                      +++++++...+.+..|.++  |++|++++|.++.+|+. + .+++|++|++++|.++.+                     
T Consensus        64 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------------  122 (251)
T 3m19_A           64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL---------------------  122 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------------
T ss_pred             EECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCc---------------------
Confidence            4455555555555556666  99999999999999876 4 899999999999998753                     


Q ss_pred             ccccccccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccc
Q 043683          120 TLVLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTA  187 (256)
Q Consensus       120 ~L~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~  187 (256)
                         .+..++.+++|++|++++|+++.+|+ .++.+++|++|++++| .+..+|..    +++|++|++++|+.
T Consensus       123 ---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          123 ---PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             ---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             ---ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence               13346889999999999999999886 6899999999999985 56777753    78999999999764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.36  E-value=1.4e-13  Score=119.84  Aligned_cols=163  Identities=19%  Similarity=0.235  Sum_probs=91.8

Q ss_pred             CccceeEeeCCCCeeeecChHHHHhh--hhhhhccC-CCC-CccCCcc-ccCCccEEeCcCCcchhh-HHHHHHhcccCC
Q 043683           37 ILIEGICLGMSKVKEIHLNPDTFRKM--LRYFHWHG-CPL-KSLPSNI-HLEKLVLLEMPHSNIQQL-LDSVRGILTRTP  110 (256)
Q Consensus        37 ~~~~~~~l~l~~l~~~~l~~~~f~~l--L~~L~ls~-n~l-~~lp~~~-~l~~L~~L~L~~n~l~~l-~~~L~~Ll~~lp  110 (256)
                      +.+..+.+.-..+.....-+..|.++  |++|++++ |.+ +.+|..+ .+++|++|++++|.+++. +..+.. +..+.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-CCCCC
Confidence            45555554433332110234566666  99999995 775 4788889 999999999999999743 222222 11111


Q ss_pred             CCchhhc-cCccccccccCCCCCCcEEEccCCCCc-cccccccCCC-CCCEEeeccCcCCcccCCC---CCCCcEEeccC
Q 043683          111 NTPLGQH-LNTLVLPENIGQLSSLGKLDLQKNNFE-RIPESVIQLS-KLGRLCLRYWERLQSLPKL---PCKLHELDAHH  184 (256)
Q Consensus       111 ~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~n~l~-~lp~~i~~l~-~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~  184 (256)
                      .+.++++ ++. .+|..++.+++|++|++++|+++ .+|..++.+. +|++|++++|...+.+|..   +. |++|++++
T Consensus       129 ~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             EEeCCCCccCC-cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            1111111 000 24556666666666666666666 6666666665 6666666664433344443   22 56666665


Q ss_pred             cccccccccchhchhhhh
Q 043683          185 CTALESLSGLFSSFEART  202 (256)
Q Consensus       185 ~~~l~~~p~~~~~l~~l~  202 (256)
                      |......|..+..+++++
T Consensus       207 N~l~~~~~~~~~~l~~L~  224 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQ  224 (313)
T ss_dssp             SEEEECCGGGCCTTSCCS
T ss_pred             CcccCcCCHHHhcCCCCC
Confidence            544444555555444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.36  E-value=1.9e-12  Score=107.22  Aligned_cols=120  Identities=18%  Similarity=0.220  Sum_probs=96.8

Q ss_pred             EeeCCCCeeeecC-hHHHHhh--hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc
Q 043683           43 CLGMSKVKEIHLN-PDTFRKM--LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH  117 (256)
Q Consensus        43 ~l~l~~l~~~~l~-~~~f~~l--L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~  117 (256)
                      .++++.++...+. ...|.++  |++|++++|.++.+++ .| .+++|++|++++|.++.+                   
T Consensus        36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-------------------   96 (220)
T 2v70_A           36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-------------------   96 (220)
T ss_dssp             EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-------------------
T ss_pred             EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-------------------
Confidence            3555555554542 3446666  9999999999999987 46 899999999999999764                   


Q ss_pred             cCccccccccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCccc-CCC---CCCCcEEeccCccc
Q 043683          118 LNTLVLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSL-PKL---PCKLHELDAHHCTA  187 (256)
Q Consensus       118 L~~L~lp~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~l-p~~---l~~L~~L~l~~~~~  187 (256)
                           .|..|+.+++|++|++++|+++.+ |..+..+++|+.|++++| .+..+ |..   +++|++|++++|+.
T Consensus        97 -----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           97 -----QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             -----CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             -----CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCC
Confidence                 245578999999999999999977 578999999999999985 46666 443   78999999998764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.36  E-value=1e-12  Score=106.78  Aligned_cols=135  Identities=17%  Similarity=0.234  Sum_probs=76.8

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |++|++++|.++.+| .+ .+++|++|++++|.++.+ +.+.. +..+..+.++++ ++. ..|..++.+++|++|++++
T Consensus        46 L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~-~~l~~-l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           46 LTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY-NPISG-LSNLERLRIMGKDVTS-DKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             CCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC-GGGTT-CTTCCEEEEECTTCBG-GGSCCCTTCTTCCEEECCS
T ss_pred             ccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc-hhhhc-CCCCCEEEeECCccCc-ccChhhcCCCCCCEEEecC
Confidence            555556655555555 44 555666666655544322 00000 000000000000 000 1356677888888888888


Q ss_pred             CCCcc-ccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhhh
Q 043683          141 NNFER-IPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEARTQ  203 (256)
Q Consensus       141 n~l~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~  203 (256)
                      |+++. .|..++.+++|++|++++|..++.+|..  +++|++|++++|. +..++ .+..+++++.
T Consensus       122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~  185 (197)
T 4ezg_A          122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQ  185 (197)
T ss_dssp             SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCE
T ss_pred             CccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH-HhccCCCCCE
Confidence            88874 5667888888888888886557777754  7788888888765 45555 4445544443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.35  E-value=6.6e-13  Score=116.00  Aligned_cols=157  Identities=18%  Similarity=0.316  Sum_probs=88.1

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCcc-CCcc-ccCCccEEeCcCCcchhh----HHHHHHh------cccC
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSL-PSNI-HLEKLVLLEMPHSNIQQL----LDSVRGI------LTRT  109 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~l-p~~~-~l~~L~~L~L~~n~l~~l----~~~L~~L------l~~l  109 (256)
                      +++++++...+.+..|.++  |++|++++|.++.+ |..+ .+++|++|++++|.++.+    +++|+.|      ++.+
T Consensus        57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~  136 (330)
T 1xku_A           57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV  136 (330)
T ss_dssp             EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBB
T ss_pred             EECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCccccc
Confidence            4555555555555556665  88888888887776 5556 778888888888877654    2223332      1111


Q ss_pred             C-----------CCc---------------hhhc--cCcc--------ccccccCCCCCCcEEEccCCCCccc-cccccC
Q 043683          110 P-----------NTP---------------LGQH--LNTL--------VLPENIGQLSSLGKLDLQKNNFERI-PESVIQ  152 (256)
Q Consensus       110 p-----------~~~---------------l~~~--L~~L--------~lp~~~~~l~~L~~L~l~~n~l~~l-p~~i~~  152 (256)
                      +           .+.               ++++  |+.|        .+|..+.  ++|++|++++|+++.+ |..+..
T Consensus       137 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~  214 (330)
T 1xku_A          137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKG  214 (330)
T ss_dssp             CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTT
T ss_pred             CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcC
Confidence            1           000               1111  2222        2233222  4566666666666644 356667


Q ss_pred             CCCCCEEeeccCcCCcccCC-C---CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683          153 LSKLGRLCLRYWERLQSLPK-L---PCKLHELDAHHCTALESLSGLFSSFEARTQY  204 (256)
Q Consensus       153 l~~L~~L~l~~~~~l~~lp~-~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l  204 (256)
                      +++|+.|++++|. +..++. .   +++|++|++++|. +..+|..+..+++++.+
T Consensus       215 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L  268 (330)
T 1xku_A          215 LNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVV  268 (330)
T ss_dssp             CTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEE
T ss_pred             CCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEE
Confidence            7777777777643 444443 2   5677777777753 55677766666555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.34  E-value=3.1e-12  Score=103.91  Aligned_cols=99  Identities=19%  Similarity=0.291  Sum_probs=84.2

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN  141 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n  141 (256)
                      +++|++++|.++.+|..+ .+++|++|++++|.++.+                        .+..|.++++|++|++++|
T Consensus        33 l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i------------------------~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL------------------------SNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             CCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC------------------------CTTTTTTCTTCCEEECCSS
T ss_pred             CCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe------------------------CHhHccCCCCCCEEECCCC
Confidence            889999999999999888 899999999999998753                        2456788999999999999


Q ss_pred             CCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcc
Q 043683          142 NFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCT  186 (256)
Q Consensus       142 ~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~  186 (256)
                      +++.+|+ .+..+++|+.|++++ +.+..+|..    +++|++|++++|+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence            9998874 688999999999998 557778764    7789999999875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.34  E-value=2e-12  Score=121.66  Aligned_cols=120  Identities=19%  Similarity=0.217  Sum_probs=68.3

Q ss_pred             EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhcc
Q 043683           43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHL  118 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L  118 (256)
                      .++++++....+.+..|.++  |++|++++|.++.+++ .| .+++|++|++++|.++.+                    
T Consensus        36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~--------------------   95 (606)
T 3vq2_A           36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF--------------------   95 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC--------------------
T ss_pred             EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc--------------------
Confidence            34556665556666667766  8888888888877754 46 788888888888887653                    


Q ss_pred             CccccccccCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCc-ccCCC---CCCCcEEeccCcc
Q 043683          119 NTLVLPENIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQ-SLPKL---PCKLHELDAHHCT  186 (256)
Q Consensus       119 ~~L~lp~~~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~-~lp~~---l~~L~~L~l~~~~  186 (256)
                          .|.+|+++++|++|++++|+++.+| ..++++++|++|++++|.... .+|..   +++|++|++++|.
T Consensus        96 ----~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A           96 ----SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             ----CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             ----ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence                1334444455555555555444443 344445555555554432111 23332   4444555554443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.33  E-value=2.7e-12  Score=109.76  Aligned_cols=156  Identities=22%  Similarity=0.304  Sum_probs=94.9

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCC-CCccC-Ccc-ccCCccEEeCcCCcchhhHH-HHHHhcccCCCCchhhc
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCP-LKSLP-SNI-HLEKLVLLEMPHSNIQQLLD-SVRGILTRTPNTPLGQH  117 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~-l~~lp-~~~-~l~~L~~L~L~~n~l~~l~~-~L~~Ll~~lp~~~l~~~  117 (256)
                      ++++++....+.+..|.++  |++|++++|. ++.++ ..+ .+++|++|++++|.++.+.+ .+.. +..+..+.++++
T Consensus        61 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n  139 (285)
T 1ozn_A           61 LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG-LAALQYLYLQDN  139 (285)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECCSS
T ss_pred             EECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC-CcCCCEEECCCC
Confidence            3444444444555566666  9999999997 88884 456 89999999999998876411 0111 011111111111


Q ss_pred             -cCccccc-cccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCccc-CCC---CCCCcEEeccCcccccc
Q 043683          118 -LNTLVLP-ENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSL-PKL---PCKLHELDAHHCTALES  190 (256)
Q Consensus       118 -L~~L~lp-~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~l-p~~---l~~L~~L~l~~~~~l~~  190 (256)
                       ++  .+| ..++.+++|++|++++|+++.+|. .+..+++|+.|++++|. +..+ |..   +++|++|++++|. +..
T Consensus       140 ~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~  215 (285)
T 1ozn_A          140 ALQ--ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN-LSA  215 (285)
T ss_dssp             CCC--CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSC
T ss_pred             ccc--ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCc-CCc
Confidence             11  122 346777788888888888877765 47777888888888754 4444 433   6678888888765 333


Q ss_pred             cc-cchhchhhhhhc
Q 043683          191 LS-GLFSSFEARTQY  204 (256)
Q Consensus       191 ~p-~~~~~l~~l~~l  204 (256)
                      +| ..+..+++++.+
T Consensus       216 ~~~~~~~~l~~L~~L  230 (285)
T 1ozn_A          216 LPTEALAPLRALQYL  230 (285)
T ss_dssp             CCHHHHTTCTTCCEE
T ss_pred             CCHHHcccCcccCEE
Confidence            44 446666555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.33  E-value=3.8e-13  Score=116.10  Aligned_cols=130  Identities=19%  Similarity=0.320  Sum_probs=71.1

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |++|++++|.++.+++ + .+++|++|++++|.++.+. .+.. +..+..+.++++ ++.+   ..++.+++|++|++++
T Consensus        70 L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~-l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~  143 (291)
T 1h6t_A           70 VTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKD-LKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGN  143 (291)
T ss_dssp             CCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTT-CTTCCEEECTTSCCCCC---GGGGGCTTCCEEECCS
T ss_pred             CCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hhcc-CCCCCEEECCCCcCCCC---hhhcCCCCCCEEEccC
Confidence            8888888888888776 6 7888888888888876641 1111 111111112221 1111   2345556666666666


Q ss_pred             CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhh
Q 043683          141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEART  202 (256)
Q Consensus       141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~  202 (256)
                      |+++.+ +.++.+++|+.|++++| .+..++..  +++|++|++++|. +..+|. +..+++++
T Consensus       144 n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L~~N~-i~~l~~-l~~l~~L~  203 (291)
T 1h6t_A          144 NKITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLD  203 (291)
T ss_dssp             SCCCCC-GGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCS
T ss_pred             CcCCcc-hhhccCCCCCEEEccCC-ccccchhhcCCCccCEEECCCCc-CCCChh-hccCCCCC
Confidence            666655 35566666666666653 34444333  5566666666543 444443 34443333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.33  E-value=1e-12  Score=114.95  Aligned_cols=71  Identities=23%  Similarity=0.281  Sum_probs=41.3

Q ss_pred             CCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccchhchhhhhh
Q 043683          131 SSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGLFSSFEARTQ  203 (256)
Q Consensus       131 ~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~  203 (256)
                      ++|++|++++|.++.++ ..+..+++|+.|++++| .+..++..    +++|++|++++|. +..+|..+..+++++.
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~  268 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQV  268 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCE
T ss_pred             CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCE
Confidence            35556666666665544 45666666666666663 34444432    5666777776653 5566666665555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.33  E-value=3.2e-12  Score=103.57  Aligned_cols=101  Identities=20%  Similarity=0.254  Sum_probs=81.6

Q ss_pred             hhhhhccCCCCCccCCc--c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEcc
Q 043683           63 LRYFHWHGCPLKSLPSN--I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ  139 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~--~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~  139 (256)
                      +++|++++|.++.+++.  + .+++|++|++++|.++++                        .|..|+.+++|++|+++
T Consensus        31 l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------------------~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI------------------------EPNAFEGASHIQELQLG   86 (192)
T ss_dssp             CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB------------------------CTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc------------------------CHhHcCCcccCCEEECC
Confidence            88899999999888864  6 889999999999988753                        36678889999999999


Q ss_pred             CCCCccccc-cccCCCCCCEEeeccCcCCccc-CCC---CCCCcEEeccCcccc
Q 043683          140 KNNFERIPE-SVIQLSKLGRLCLRYWERLQSL-PKL---PCKLHELDAHHCTAL  188 (256)
Q Consensus       140 ~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~l-p~~---l~~L~~L~l~~~~~l  188 (256)
                      +|+++.++. .+..+++|++|++++|. +..+ |..   +++|++|++++|+..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            999997764 58889999999999855 4444 543   778999999987643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.33  E-value=8.1e-13  Score=124.38  Aligned_cols=105  Identities=25%  Similarity=0.306  Sum_probs=89.6

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN  141 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n  141 (256)
                      |++|++++|.++.+|. + .+++|++|++++|.++.                         +|..++.+++|++|++++|
T Consensus       443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~-------------------------lp~~~~~l~~L~~L~Ls~N  496 (567)
T 1dce_A          443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA-------------------------LPPALAALRCLEVLQASDN  496 (567)
T ss_dssp             CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCC-------------------------CCGGGGGCTTCCEEECCSS
T ss_pred             ceEEEecCCCCCCCcC-ccccccCcEeecCcccccc-------------------------cchhhhcCCCCCEEECCCC
Confidence            7789999999999987 8 89999999999999874                         3888899999999999999


Q ss_pred             CCccccccccCCCCCCEEeeccCcCCccc--CCC---CCCCcEEeccCcccccccccchh
Q 043683          142 NFERIPESVIQLSKLGRLCLRYWERLQSL--PKL---PCKLHELDAHHCTALESLSGLFS  196 (256)
Q Consensus       142 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~l--p~~---l~~L~~L~l~~~~~l~~~p~~~~  196 (256)
                      +++.+| .++.+++|+.|++++| .+..+  |..   +++|+.|++++|. +..+|+...
T Consensus       497 ~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~  553 (567)
T 1dce_A          497 ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQE  553 (567)
T ss_dssp             CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTT
T ss_pred             CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHH
Confidence            999998 8999999999999985 46666  654   8899999999976 555655443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.33  E-value=8.6e-13  Score=122.58  Aligned_cols=136  Identities=19%  Similarity=0.252  Sum_probs=92.0

Q ss_pred             EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhcc
Q 043683           43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHL  118 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L  118 (256)
                      .++++.++...+.+..|.++  |++|++++|.++.+++ .| .+++|++|++++|.++++                    
T Consensus        30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------------------   89 (549)
T 2z81_A           30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL--------------------   89 (549)
T ss_dssp             EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC--------------------
T ss_pred             EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc--------------------
Confidence            34555555555555666666  9999999999888775 46 889999999999988764                    


Q ss_pred             CccccccccCCCCCCcEEEccCCCCcc--ccccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccc
Q 043683          119 NTLVLPENIGQLSSLGKLDLQKNNFER--IPESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLS  192 (256)
Q Consensus       119 ~~L~lp~~~~~l~~L~~L~l~~n~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p  192 (256)
                          .|..++.+++|++|++++|.++.  +|..++++++|++|++++|..++.+|..    +++|++|++++|......|
T Consensus        90 ----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A           90 ----SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             ----CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             ----CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence                13336677777777777777763  3456777777777777766556666532    5667777777666555566


Q ss_pred             cchhchhhhh
Q 043683          193 GLFSSFEART  202 (256)
Q Consensus       193 ~~~~~l~~l~  202 (256)
                      ..++.+++++
T Consensus       166 ~~l~~l~~L~  175 (549)
T 2z81_A          166 QSLKSIRDIH  175 (549)
T ss_dssp             TTTTTCSEEE
T ss_pred             hhhhccccCc
Confidence            6665555444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.32  E-value=1.5e-12  Score=119.28  Aligned_cols=55  Identities=20%  Similarity=0.326  Sum_probs=27.0

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCcc-CCcc-ccCCccEEeCcCCcchhh
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSL-PSNI-HLEKLVLLEMPHSNIQQL   98 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~l-p~~~-~l~~L~~L~L~~n~l~~l   98 (256)
                      +++++++...+.+..|.++  |++|++++|.++.+ |..| .+++|++|++++|.++.+
T Consensus        37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~   95 (477)
T 2id5_A           37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI   95 (477)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred             EECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc
Confidence            3444444444444445444  55555555555544 3334 555555555555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.32  E-value=3.1e-12  Score=120.30  Aligned_cols=161  Identities=20%  Similarity=0.211  Sum_probs=98.7

Q ss_pred             EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh----HH---HHHHh-c-----
Q 043683           43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL----LD---SVRGI-L-----  106 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l----~~---~L~~L-l-----  106 (256)
                      .++++++....+.+..|.++  |++|++++|.++.+|..+ .+++|++|++++|.++.+    +.   +|+.| +     
T Consensus       258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  337 (606)
T 3t6q_A          258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK  337 (606)
T ss_dssp             EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred             EEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence            45666666666777777776  999999999999999998 899999999999998865    22   22222 1     


Q ss_pred             -ccCCCCchhhc--cCcc-----------ccccccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCcccC
Q 043683          107 -TRTPNTPLGQH--LNTL-----------VLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSLP  171 (256)
Q Consensus       107 -~~lp~~~l~~~--L~~L-----------~lp~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp  171 (256)
                       ..+|.-.++.+  |+.|           ..|..++.+++|++|++++|.++.+ |..++.+++|+.|++++|......|
T Consensus       338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  417 (606)
T 3t6q_A          338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA  417 (606)
T ss_dssp             CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred             ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence             12332222222  3333           1145566677777777777766644 3456666677777766644322222


Q ss_pred             CC----CCCCcEEeccCcccccccccchhchhhhhh
Q 043683          172 KL----PCKLHELDAHHCTALESLSGLFSSFEARTQ  203 (256)
Q Consensus       172 ~~----l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~  203 (256)
                      ..    +++|++|++++|......|..++.+++++.
T Consensus       418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  453 (606)
T 3t6q_A          418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH  453 (606)
T ss_dssp             CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred             chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence            21    556666666665544444555555544443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.32  E-value=7.2e-13  Score=115.45  Aligned_cols=158  Identities=16%  Similarity=0.170  Sum_probs=94.3

Q ss_pred             EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh--HHHHHHh------------
Q 043683           43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL--LDSVRGI------------  105 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l--~~~L~~L------------  105 (256)
                      .+++++++...+.+..|.++  |++|++++|.+..+++ + .+++|++|++++|.++++  .++|+.|            
T Consensus        38 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~  116 (317)
T 3o53_A           38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC  116 (317)
T ss_dssp             EEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEE
T ss_pred             EEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCc
Confidence            45666666667777778777  8999999998877665 6 888899999988888765  2333332            


Q ss_pred             ---------------cccCCCCchhhc--cCcc---------cccccc-CCCCCCcEEEccCCCCccccccccCCCCCCE
Q 043683          106 ---------------LTRTPNTPLGQH--LNTL---------VLPENI-GQLSSLGKLDLQKNNFERIPESVIQLSKLGR  158 (256)
Q Consensus       106 ---------------l~~lp~~~l~~~--L~~L---------~lp~~~-~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~  158 (256)
                                     ++.++...++.+  |+.|         ..|..+ ..+++|++|++++|.++.+|.. ..+++|++
T Consensus       117 ~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~  195 (317)
T 3o53_A          117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKT  195 (317)
T ss_dssp             CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCE
T ss_pred             cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCE
Confidence                           111111111111  2222         112333 3456666666666666665532 24666777


Q ss_pred             EeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683          159 LCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTQY  204 (256)
Q Consensus       159 L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l  204 (256)
                      |++++ +.+..+|..   +++|++|++++|. +..+|..+..+++++.+
T Consensus       196 L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L  242 (317)
T 3o53_A          196 LDLSS-NKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHF  242 (317)
T ss_dssp             EECCS-SCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEE
T ss_pred             EECCC-CcCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEE
Confidence            77766 335555543   5677777777753 55667666666655543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.31  E-value=1.6e-12  Score=100.57  Aligned_cols=113  Identities=19%  Similarity=0.279  Sum_probs=88.1

Q ss_pred             hhhhhccCCCCC--ccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEcc
Q 043683           63 LRYFHWHGCPLK--SLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ  139 (256)
Q Consensus        63 L~~L~ls~n~l~--~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~  139 (256)
                      +++|++++|.++  .+|..+ .+++|++|++++|.++.+                          ..++.+++|++|+++
T Consensus        19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------------~~~~~l~~L~~L~Ls   72 (149)
T 2je0_A           19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--------------------------ANLPKLNKLKKLELS   72 (149)
T ss_dssp             CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------------------------TTCCCCTTCCEEECC
T ss_pred             CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------------------------hhhhcCCCCCEEECC
Confidence            888999999987  888887 899999999999988641                          345788899999999


Q ss_pred             CCCCcc-ccccccCCCCCCEEeeccCcCCcccC--CC---CCCCcEEeccCccccccccc----chhchhhhhh
Q 043683          140 KNNFER-IPESVIQLSKLGRLCLRYWERLQSLP--KL---PCKLHELDAHHCTALESLSG----LFSSFEARTQ  203 (256)
Q Consensus       140 ~n~l~~-lp~~i~~l~~L~~L~l~~~~~l~~lp--~~---l~~L~~L~l~~~~~l~~~p~----~~~~l~~l~~  203 (256)
                      +|.++. +|..++.+++|++|++++|. +..+|  ..   +++|++|++++|. +..+|.    .+..+++++.
T Consensus        73 ~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~  144 (149)
T 2je0_A           73 DNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTY  144 (149)
T ss_dssp             SSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCE
T ss_pred             CCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccc
Confidence            999986 77777889999999999854 66654  32   7889999999875 555554    4555555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.31  E-value=1e-12  Score=123.64  Aligned_cols=43  Identities=21%  Similarity=0.207  Sum_probs=33.4

Q ss_pred             hHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh
Q 043683           56 PDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL   98 (256)
Q Consensus        56 ~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l   98 (256)
                      +..|.++  |++|++++|.+..+|..+ .+++|++|++++|.+.+.
T Consensus       369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~  414 (606)
T 3vq2_A          369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV  414 (606)
T ss_dssp             CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEEST
T ss_pred             hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCc
Confidence            3445555  888888888888888777 888888888888887654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.31  E-value=2.1e-12  Score=115.29  Aligned_cols=78  Identities=23%  Similarity=0.290  Sum_probs=54.9

Q ss_pred             cccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhh
Q 043683          125 ENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEA  200 (256)
Q Consensus       125 ~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~  200 (256)
                      ..++.+++|++|++++|.++.+ |..++.+++|++|++++ +.+..+|..   +++|++|++++|. +..+|..+..+++
T Consensus       242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~  319 (390)
T 3o6n_A          242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDR  319 (390)
T ss_dssp             GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTT
T ss_pred             HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCc
Confidence            3456677888888888888754 56777888888888887 446666654   6778888888764 6677777766665


Q ss_pred             hhhc
Q 043683          201 RTQY  204 (256)
Q Consensus       201 l~~l  204 (256)
                      ++.+
T Consensus       320 L~~L  323 (390)
T 3o6n_A          320 LENL  323 (390)
T ss_dssp             CSEE
T ss_pred             CCEE
Confidence            5543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.31  E-value=2e-12  Score=102.15  Aligned_cols=58  Identities=26%  Similarity=0.284  Sum_probs=28.3

Q ss_pred             cCCCCCCcEEEccCCCCcccc--ccccCCCCCCEEeeccCcCCcccCC----C---CCCCcEEeccCc
Q 043683          127 IGQLSSLGKLDLQKNNFERIP--ESVIQLSKLGRLCLRYWERLQSLPK----L---PCKLHELDAHHC  185 (256)
Q Consensus       127 ~~~l~~L~~L~l~~n~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~----~---l~~L~~L~l~~~  185 (256)
                      ++.+++|++|++++|.++.+|  ..+..+++|+.|++++| .+..+|.    .   +++|++|++++|
T Consensus        91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence            334455555555555555444  34555555555555543 2344443    1   445555555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.30  E-value=8.1e-12  Score=101.15  Aligned_cols=115  Identities=20%  Similarity=0.279  Sum_probs=93.3

Q ss_pred             hhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCcccccc--ccCCCCCCcEEEccCC
Q 043683           64 RYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPE--NIGQLSSLGKLDLQKN  141 (256)
Q Consensus        64 ~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~--~~~~l~~L~~L~l~~n  141 (256)
                      +++++++|.++.+|..+ ..++++|++++|.++.+                         +.  .++.+++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~-------------------------~~~~~~~~l~~L~~L~Ls~N   64 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRI-------------------------SSDGLFGRLPHLVKLELKRN   64 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSB-------------------------CCSCSGGGCTTCCEEECCSS
T ss_pred             CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCcc-------------------------CCccccccCCCCCEEECCCC
Confidence            56789999999999887 23899999999998753                         33  3788999999999999


Q ss_pred             CCccc-cccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccchhchhhhhhcc
Q 043683          142 NFERI-PESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGLFSSFEARTQYF  205 (256)
Q Consensus       142 ~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l~  205 (256)
                      +++.+ |..++.+++|++|++++| .+..++..    +++|++|++++|......|..+..+++++.+.
T Consensus        65 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           65 QLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            99977 678999999999999984 46666653    78999999999876666688888877776543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.30  E-value=2.3e-12  Score=101.77  Aligned_cols=114  Identities=20%  Similarity=0.295  Sum_probs=94.6

Q ss_pred             hhhhhccCCCCC--ccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEcc
Q 043683           63 LRYFHWHGCPLK--SLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ  139 (256)
Q Consensus        63 L~~L~ls~n~l~--~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~  139 (256)
                      +++|++++|.+.  .+|..+ .+++|++|++++|.++.+                          ..++.+++|++|+++
T Consensus        26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--------------------------~~~~~l~~L~~L~Ls   79 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--------------------------SNLPKLPKLKKLELS   79 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--------------------------SSCCCCSSCCEEEEE
T ss_pred             CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--------------------------hhhccCCCCCEEECc
Confidence            899999999988  899888 999999999999998641                          456889999999999


Q ss_pred             CCCCcc-ccccccCCCCCCEEeeccCcCCcccCC--C---CCCCcEEeccCccccccccc----chhchhhhhhc
Q 043683          140 KNNFER-IPESVIQLSKLGRLCLRYWERLQSLPK--L---PCKLHELDAHHCTALESLSG----LFSSFEARTQY  204 (256)
Q Consensus       140 ~n~l~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~--~---l~~L~~L~l~~~~~l~~~p~----~~~~l~~l~~l  204 (256)
                      +|+++. +|..++.+++|++|++++| .+..+|.  .   +++|++|++++|. +..+|.    .+..+++++.+
T Consensus        80 ~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L  152 (168)
T 2ell_A           80 ENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYL  152 (168)
T ss_dssp             SCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEE
T ss_pred             CCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEe
Confidence            999997 7777788999999999985 5777763  2   7899999999976 566665    56666666544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.30  E-value=5e-12  Score=109.81  Aligned_cols=137  Identities=18%  Similarity=0.155  Sum_probs=69.0

Q ss_pred             hhhhhccCCCCCccC-Ccc-ccCCccEEeCcCCcchhhHHHHHHh----cccCCCCchhhc-cCcc-ccc-cccCCCCCC
Q 043683           63 LRYFHWHGCPLKSLP-SNI-HLEKLVLLEMPHSNIQQLLDSVRGI----LTRTPNTPLGQH-LNTL-VLP-ENIGQLSSL  133 (256)
Q Consensus        63 L~~L~ls~n~l~~lp-~~~-~l~~L~~L~L~~n~l~~l~~~L~~L----l~~lp~~~l~~~-L~~L-~lp-~~~~~l~~L  133 (256)
                      |++|++++|.++.++ ..+ .+++|++|++++|++.+..+-...+    +..+..+.++++ ++.+ .++ ..+..+++|
T Consensus       151 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L  230 (312)
T 1wwl_A          151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL  230 (312)
T ss_dssp             CCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred             CcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence            777888888877776 445 7888888888888764421101010    111111112222 2211 111 122345566


Q ss_pred             cEEEccCCCCcccc--ccccCCCCCCEEeeccCcCCcccCCC-CCCCcEEeccCcccccccccchhchhhhh
Q 043683          134 GKLDLQKNNFERIP--ESVIQLSKLGRLCLRYWERLQSLPKL-PCKLHELDAHHCTALESLSGLFSSFEART  202 (256)
Q Consensus       134 ~~L~l~~n~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L~~L~l~~~~~l~~~p~~~~~l~~l~  202 (256)
                      ++|++++|+++..+  +.+..+++|++|++++| .++.+|.. .++|++|++++|. +..+|. +..+++++
T Consensus       231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~  299 (312)
T 1wwl_A          231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLPAKLSVLDLSYNR-LDRNPS-PDELPQVG  299 (312)
T ss_dssp             SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCCSEEEEEECCSSC-CCSCCC-TTTSCEEE
T ss_pred             CEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhccCCceEEECCCCC-CCCChh-HhhCCCCC
Confidence            66666666665433  23445566666666653 34455554 3456666666543 444444 44444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.29  E-value=9.7e-13  Score=121.55  Aligned_cols=157  Identities=16%  Similarity=0.155  Sum_probs=87.1

Q ss_pred             EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh--HHHHHHh------cccC--
Q 043683           43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL--LDSVRGI------LTRT--  109 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l--~~~L~~L------l~~l--  109 (256)
                      .++++++....+.+..|.++  |++|++++|.++.+++ + .+++|++|++++|.++.+  .++|+.|      +..+  
T Consensus        38 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~  116 (487)
T 3oja_A           38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC  116 (487)
T ss_dssp             EEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEE
T ss_pred             EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCc
Confidence            45666666666777777777  9999999999877665 7 888999999999888765  2333333      1110  


Q ss_pred             ---CC---Cc-------------hhhc--cCcc---------ccccccC-CCCCCcEEEccCCCCccccccccCCCCCCE
Q 043683          110 ---PN---TP-------------LGQH--LNTL---------VLPENIG-QLSSLGKLDLQKNNFERIPESVIQLSKLGR  158 (256)
Q Consensus       110 ---p~---~~-------------l~~~--L~~L---------~lp~~~~-~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~  158 (256)
                         +.   +.             ++.+  |+.|         ..|..+. .+++|++|++++|.++.+|. ...+++|+.
T Consensus       117 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~  195 (487)
T 3oja_A          117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKT  195 (487)
T ss_dssp             CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCE
T ss_pred             cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCE
Confidence               00   00             1111  1111         1233333 45555555555555554442 223555556


Q ss_pred             EeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhhhhh
Q 043683          159 LCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTQ  203 (256)
Q Consensus       159 L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~  203 (256)
                      |++++| .+..+|..   +++|+.|++++|. +..+|..+..++.+..
T Consensus       196 L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~  241 (487)
T 3oja_A          196 LDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEH  241 (487)
T ss_dssp             EECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCE
T ss_pred             EECCCC-CCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCE
Confidence            666553 34444443   5566666666643 4456666555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.29  E-value=9.9e-12  Score=100.89  Aligned_cols=113  Identities=21%  Similarity=0.338  Sum_probs=94.1

Q ss_pred             hhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCCC
Q 043683           64 RYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNF  143 (256)
Q Consensus        64 ~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~l  143 (256)
                      +++++++|.++.+|..+ .++|++|++++|.++.+                         |..+..+++|++|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~i-------------------------p~~~~~l~~L~~L~Ls~N~i   66 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLV-------------------------PKELSNYKHLTLIDLSNNRI   66 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSC-------------------------CGGGGGCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchh-------------------------HHHhhcccCCCEEECCCCcC
Confidence            46788999999999876 46899999999998753                         77889999999999999999


Q ss_pred             cccc-ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccccccccc-chhchhhhhhc
Q 043683          144 ERIP-ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSG-LFSSFEARTQY  204 (256)
Q Consensus       144 ~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~-~~~~l~~l~~l  204 (256)
                      +.++ ..+.++++|++|++++ +.+..+|..    +++|++|++++|. +..+|. .+..+.++..+
T Consensus        67 ~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L  131 (193)
T 2wfh_A           67 STLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHL  131 (193)
T ss_dssp             CCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEE
T ss_pred             CEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEE
Confidence            9887 4699999999999998 557777753    7899999999976 666666 47677666654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.29  E-value=4.4e-12  Score=123.14  Aligned_cols=79  Identities=18%  Similarity=0.193  Sum_probs=53.0

Q ss_pred             cccccCCCCCCcEEEccCCCCc-cccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhch
Q 043683          123 LPENIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSF  198 (256)
Q Consensus       123 lp~~~~~l~~L~~L~l~~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l  198 (256)
                      +|..++.+++|++|++++|+++ .+|.+++.+++|++|++++|...+.+|..   +++|++|++++|...+.+|..+...
T Consensus       482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~  561 (768)
T 3rgz_A          482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ  561 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred             CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence            4666677777777777777776 66667777777777777776555566654   6677777777776666677766554


Q ss_pred             hhh
Q 043683          199 EAR  201 (256)
Q Consensus       199 ~~l  201 (256)
                      ..+
T Consensus       562 ~~~  564 (768)
T 3rgz_A          562 SGK  564 (768)
T ss_dssp             TTC
T ss_pred             cch
Confidence            433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.29  E-value=1.1e-11  Score=117.89  Aligned_cols=74  Identities=20%  Similarity=0.279  Sum_probs=60.4

Q ss_pred             ccccccC--CCCCCcEEEccCCCCccccccccCCCCCCEEeec------cCcCCcccCCC---CCCCcEEeccCcccccc
Q 043683          122 VLPENIG--QLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLR------YWERLQSLPKL---PCKLHELDAHHCTALES  190 (256)
Q Consensus       122 ~lp~~~~--~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~------~~~~l~~lp~~---l~~L~~L~l~~~~~l~~  190 (256)
                      .+|..+.  .+++|++|++++|+++.+|..++.+++|+.|+++      +|...+.+|..   +++|++|++++|. ++.
T Consensus       502 ~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~  580 (636)
T 4eco_A          502 KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRK  580 (636)
T ss_dssp             BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCB
T ss_pred             ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCc
Confidence            3477776  8899999999999999899899999999999994      45556777865   7889999999876 488


Q ss_pred             cccchh
Q 043683          191 LSGLFS  196 (256)
Q Consensus       191 ~p~~~~  196 (256)
                      +|..+.
T Consensus       581 ip~~~~  586 (636)
T 4eco_A          581 VNEKIT  586 (636)
T ss_dssp             CCSCCC
T ss_pred             cCHhHh
Confidence            888755

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.29  E-value=1.1e-12  Score=123.78  Aligned_cols=78  Identities=23%  Similarity=0.271  Sum_probs=55.2

Q ss_pred             cccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhh
Q 043683          125 ENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEA  200 (256)
Q Consensus       125 ~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~  200 (256)
                      ..++.+++|++|++++|.++.+ |..++.+++|+.|++++| .+..+|..   +++|++|++++|. +..+|..+..+++
T Consensus       248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~  325 (597)
T 3oja_B          248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDR  325 (597)
T ss_dssp             GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTT
T ss_pred             hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCC
Confidence            4566778888888888888744 567788888888888874 45666654   6778888888764 5577777766665


Q ss_pred             hhhc
Q 043683          201 RTQY  204 (256)
Q Consensus       201 l~~l  204 (256)
                      +..|
T Consensus       326 L~~L  329 (597)
T 3oja_B          326 LENL  329 (597)
T ss_dssp             CSEE
T ss_pred             CCEE
Confidence            5543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.29  E-value=1.3e-11  Score=98.51  Aligned_cols=103  Identities=21%  Similarity=0.277  Sum_probs=84.6

Q ss_pred             hhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCCC
Q 043683           64 RYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNF  143 (256)
Q Consensus        64 ~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~l  143 (256)
                      +.+++++|.++.+|..+. ++|++|++++|+++++                        .|..|+.+++|++|++++|++
T Consensus        15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~------------------------~~~~~~~l~~L~~L~Ls~N~l   69 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKL------------------------EPGVFDHLVNLQQLYFNSNKL   69 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCC------------------------CTTTTTTCTTCCEEECCSSCC
T ss_pred             cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCcccc------------------------CHHHhcCCcCCCEEECCCCCC
Confidence            467889999999998773 8999999999998763                        256778999999999999999


Q ss_pred             cccccc-ccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccccccccc
Q 043683          144 ERIPES-VIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSG  193 (256)
Q Consensus       144 ~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~  193 (256)
                      +.+|.. +..+++|++|++++ +.++.+|..    +++|++|++++|+ +...+.
T Consensus        70 ~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~  122 (174)
T 2r9u_A           70 TAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR  122 (174)
T ss_dssp             CCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred             CccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence            999865 58999999999998 557788764    7899999999875 444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.28  E-value=2.7e-12  Score=111.53  Aligned_cols=132  Identities=20%  Similarity=0.294  Sum_probs=91.7

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |++|++++|.+..+++ + .+++|++|++++|.++.+. .+.. +..+..+.++++ ++.  ++ .++.+++|++|++++
T Consensus        65 L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~-l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~l~~  138 (308)
T 1h6u_A           65 LIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAG-LQSIKTLDLTSTQITD--VT-PLAGLSNLQVLYLDL  138 (308)
T ss_dssp             CCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTT-CTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECCS
T ss_pred             CCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcC-CCCCCEEECCCCCCCC--ch-hhcCCCCCCEEECCC
Confidence            8888999888888887 7 8889999999998877641 1111 111122222222 222  23 378889999999999


Q ss_pred             CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683          141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEARTQY  204 (256)
Q Consensus       141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l  204 (256)
                      |.++.++. ++.+++|+.|++++| .+..++..  +++|++|++++|. +..++. +..+++++.+
T Consensus       139 n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L  200 (308)
T 1h6u_A          139 NQITNISP-LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNK-ISDISP-LASLPNLIEV  200 (308)
T ss_dssp             SCCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEE
T ss_pred             CccCcCcc-ccCCCCccEEEccCC-cCCCChhhcCCCCCCEEECCCCc-cCcChh-hcCCCCCCEE
Confidence            99988875 888999999999985 46666654  7889999999875 555654 5555555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.28  E-value=5.1e-12  Score=100.74  Aligned_cols=114  Identities=17%  Similarity=0.140  Sum_probs=85.2

Q ss_pred             hhhhhccCCCCCccCCcccc-CCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683           63 LRYFHWHGCPLKSLPSNIHL-EKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN  141 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~~l-~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n  141 (256)
                      |++|++++|.++.+|....+ ++|++|++++|.++.+                          ..++.+++|++|++++|
T Consensus        21 L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--------------------------~~l~~l~~L~~L~Ls~N   74 (176)
T 1a9n_A           21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--------------------------DGFPLLRRLKTLLVNNN   74 (176)
T ss_dssp             CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--------------------------CCCCCCSSCCEEECCSS
T ss_pred             ceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--------------------------cccccCCCCCEEECCCC
Confidence            78888888888888653344 4899999999888642                          34577888999999999


Q ss_pred             CCccccccc-cCCCCCCEEeeccCcCCcccCC--C---CCCCcEEeccCcccccccccc----hhchhhhhhc
Q 043683          142 NFERIPESV-IQLSKLGRLCLRYWERLQSLPK--L---PCKLHELDAHHCTALESLSGL----FSSFEARTQY  204 (256)
Q Consensus       142 ~l~~lp~~i-~~l~~L~~L~l~~~~~l~~lp~--~---l~~L~~L~l~~~~~l~~~p~~----~~~l~~l~~l  204 (256)
                      +++.+|+.+ +.+++|++|++++| .++.+|.  .   +++|++|++++|+ +..+|..    +..++.++.+
T Consensus        75 ~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~L  145 (176)
T 1a9n_A           75 RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVL  145 (176)
T ss_dssp             CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEE
T ss_pred             cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCcccee
Confidence            988888655 88889999999874 4677776  2   7788999998875 5566664    5555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.28  E-value=1.5e-12  Score=112.97  Aligned_cols=136  Identities=18%  Similarity=0.191  Sum_probs=84.3

Q ss_pred             hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh--HH-HH--HHhcccCCCCchhhc-cCcc-ccccc-cCCCCC
Q 043683           63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL--LD-SV--RGILTRTPNTPLGQH-LNTL-VLPEN-IGQLSS  132 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l--~~-~L--~~Ll~~lp~~~l~~~-L~~L-~lp~~-~~~l~~  132 (256)
                      |++|++++|.+..+|+. + .+++|++|++++|++.+.  .. ..  .. +..+..+.++++ ++.+ .++.. ++.+++
T Consensus       147 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~  225 (310)
T 4glp_A          147 LKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK-FPAIQNLALRNTGMETPTGVCAALAAAGVQ  225 (310)
T ss_dssp             CCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS-SCCCCSCBCCSSCCCCHHHHHHHHHHHTCC
T ss_pred             CCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc-CCCCCEEECCCCCCCchHHHHHHHHhcCCC
Confidence            88899999998877754 5 889999999999987542  00 00  00 122222333333 2222 11122 356778


Q ss_pred             CcEEEccCCCCccc-cccccCC---CCCCEEeeccCcCCcccCCC-CCCCcEEeccCcccccccccchhchhhhh
Q 043683          133 LGKLDLQKNNFERI-PESVIQL---SKLGRLCLRYWERLQSLPKL-PCKLHELDAHHCTALESLSGLFSSFEART  202 (256)
Q Consensus       133 L~~L~l~~n~l~~l-p~~i~~l---~~L~~L~l~~~~~l~~lp~~-l~~L~~L~l~~~~~l~~~p~~~~~l~~l~  202 (256)
                      |++|++++|+++.+ |+.++.+   ++|++|++++ +.++.+|.. .++|++|++++|. +..+|. +..++.++
T Consensus       226 L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~  297 (310)
T 4glp_A          226 PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLPAKLRVLDLSSNR-LNRAPQ-PDELPEVD  297 (310)
T ss_dssp             CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCCSCCSCEECCSCC-CCSCCC-TTSCCCCS
T ss_pred             CCEEECCCCCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhcCCCCEEECCCCc-CCCCch-hhhCCCcc
Confidence            88888888888755 6666665   5888888887 446677776 6688888888764 455544 34444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.28  E-value=1.5e-12  Score=108.72  Aligned_cols=54  Identities=15%  Similarity=0.224  Sum_probs=38.2

Q ss_pred             eCCCCeeeecChHHHHhh--hhhhhccCCC-CCccCCc-c-ccCCccEEeCcC-Ccchhh
Q 043683           45 GMSKVKEIHLNPDTFRKM--LRYFHWHGCP-LKSLPSN-I-HLEKLVLLEMPH-SNIQQL   98 (256)
Q Consensus        45 ~l~~l~~~~l~~~~f~~l--L~~L~ls~n~-l~~lp~~-~-~l~~L~~L~L~~-n~l~~l   98 (256)
                      ++++++...+.+..|.++  |++|++++|. ++.+|+. | .+++|++|++++ |.++.+
T Consensus        37 ~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i   96 (239)
T 2xwt_C           37 KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI   96 (239)
T ss_dssp             EEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred             EEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence            334444445555566666  8888888886 8888764 5 788888888887 877654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.28  E-value=6.4e-12  Score=117.02  Aligned_cols=132  Identities=23%  Similarity=0.258  Sum_probs=78.2

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccC
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLN  119 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~  119 (256)
                      ++++.+....+.+..|.++  |++|++++|.++.+++. | .+++|++|++++|.++.+                     
T Consensus        33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~---------------------   91 (570)
T 2z63_A           33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL---------------------   91 (570)
T ss_dssp             EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE---------------------
T ss_pred             EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc---------------------
Confidence            5566666556666677776  88899998888888655 5 788999999998887653                     


Q ss_pred             ccccccccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCcc--cCCC---CCCCcEEeccCccccccccc
Q 043683          120 TLVLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQS--LPKL---PCKLHELDAHHCTALESLSG  193 (256)
Q Consensus       120 ~L~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--lp~~---l~~L~~L~l~~~~~l~~~p~  193 (256)
                         .|..|+++++|++|++++|+++.+|. .++++++|++|++++|. +..  +|..   +++|++|++++|......|.
T Consensus        92 ---~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~  167 (570)
T 2z63_A           92 ---ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (570)
T ss_dssp             ---CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred             ---CHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHH
Confidence               12344555555555555555555543 45555555555555532 222  3432   45555555555443322333


Q ss_pred             chhchhh
Q 043683          194 LFSSFEA  200 (256)
Q Consensus       194 ~~~~l~~  200 (256)
                      .++.++.
T Consensus       168 ~~~~l~~  174 (570)
T 2z63_A          168 DLRVLHQ  174 (570)
T ss_dssp             GGHHHHT
T ss_pred             Hccchhc
Confidence            4443333

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.28  E-value=1.2e-12  Score=124.52  Aligned_cols=132  Identities=23%  Similarity=0.355  Sum_probs=75.5

Q ss_pred             hhhhhccCCC-CCccCCcc-ccCCccEEeCcCCc-chh--hHHHHHH---------h---------cccCCCC-chhhc-
Q 043683           63 LRYFHWHGCP-LKSLPSNI-HLEKLVLLEMPHSN-IQQ--LLDSVRG---------I---------LTRTPNT-PLGQH-  117 (256)
Q Consensus        63 L~~L~ls~n~-l~~lp~~~-~l~~L~~L~L~~n~-l~~--l~~~L~~---------L---------l~~lp~~-~l~~~-  117 (256)
                      |++|++++|. .+.+|..+ .+++|++|++++|+ +++  ++..+..         |         ++.+|.. .++.+ 
T Consensus       251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~  330 (636)
T 4eco_A          251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK  330 (636)
T ss_dssp             CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCT
T ss_pred             CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCC
Confidence            9999999998 66789888 99999999999998 875  4333332         1         2223320 12221 


Q ss_pred             -cCcc---------ccccccCCCCCCcEEEccCCCCccccccccCCCC-CCEEeeccCcCCcccCCC-----CCCCcEEe
Q 043683          118 -LNTL---------VLPENIGQLSSLGKLDLQKNNFERIPESVIQLSK-LGRLCLRYWERLQSLPKL-----PCKLHELD  181 (256)
Q Consensus       118 -L~~L---------~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~-L~~L~l~~~~~l~~lp~~-----l~~L~~L~  181 (256)
                       |+.|         .+| .++.+++|++|++++|+++.+|+.++.+++ |++|++++|. +..+|..     +++|++|+
T Consensus       331 ~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~  408 (636)
T 4eco_A          331 KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAID  408 (636)
T ss_dssp             TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEE
T ss_pred             CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEE
Confidence             2222         334 444445555555555555555555555555 5555555533 4455543     22455666


Q ss_pred             ccCcccccccccchh
Q 043683          182 AHHCTALESLSGLFS  196 (256)
Q Consensus       182 l~~~~~l~~~p~~~~  196 (256)
                      +++|...+..|..+.
T Consensus       409 Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          409 FSYNEIGSVDGKNFD  423 (636)
T ss_dssp             CCSSCTTTTTTCSSC
T ss_pred             CcCCcCCCcchhhhc
Confidence            665554444555444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.28  E-value=5.6e-12  Score=118.57  Aligned_cols=135  Identities=19%  Similarity=0.201  Sum_probs=91.7

Q ss_pred             EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCcc-CCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhcc
Q 043683           43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSL-PSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHL  118 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~l-p~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L  118 (256)
                      .++++++....+.+..|.++  |++|++++|.+..+ |..| .+++|++|++++|.++.+                    
T Consensus        37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------------------   96 (606)
T 3t6q_A           37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM--------------------   96 (606)
T ss_dssp             EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE--------------------
T ss_pred             EEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc--------------------
Confidence            45566666566666667766  88888888887766 4456 788888888888877653                    


Q ss_pred             CccccccccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCccc--CCC--CCCCcEEeccCccccccccc
Q 043683          119 NTLVLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSL--PKL--PCKLHELDAHHCTALESLSG  193 (256)
Q Consensus       119 ~~L~lp~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~l--p~~--l~~L~~L~l~~~~~l~~~p~  193 (256)
                          .|..++.+++|++|++++|+++.+ |..++++++|++|++++|. +..+  |..  +++|++|++++|......|.
T Consensus        97 ----~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  171 (606)
T 3t6q_A           97 ----AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE  171 (606)
T ss_dssp             ----CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred             ----ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChh
Confidence                255667777777777777777766 4567777777777777744 4444  433  66777777777654444455


Q ss_pred             chhchhhhh
Q 043683          194 LFSSFEART  202 (256)
Q Consensus       194 ~~~~l~~l~  202 (256)
                      .++.+++++
T Consensus       172 ~~~~l~~L~  180 (606)
T 3t6q_A          172 DMSSLQQAT  180 (606)
T ss_dssp             HHHTTTTCC
T ss_pred             hhhhhcccc
Confidence            566655554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.28  E-value=3.3e-12  Score=116.89  Aligned_cols=142  Identities=24%  Similarity=0.391  Sum_probs=80.5

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh----HHH---HHHh------c
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL----LDS---VRGI------L  106 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l----~~~---L~~L------l  106 (256)
                      ++++++....+.+..|.++  |++|++++|.++.+|.. | .+++|++|++++|.++.+    +.+   |+.|      +
T Consensus        61 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l  140 (477)
T 2id5_A           61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL  140 (477)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC
T ss_pred             EECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcc
Confidence            3444444445555667666  99999999999999876 5 899999999999988765    222   2222      1


Q ss_pred             ccCCCCchhhc--cCcc--------ccc-cccCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC-
Q 043683          107 TRTPNTPLGQH--LNTL--------VLP-ENIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL-  173 (256)
Q Consensus       107 ~~lp~~~l~~~--L~~L--------~lp-~~~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~-  173 (256)
                      ..++.-.++++  |+.|        .+| ..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|+.+..+|.. 
T Consensus       141 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  220 (477)
T 2id5_A          141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC  220 (477)
T ss_dssp             CEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT
T ss_pred             ceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc
Confidence            11111112222  3333        122 23555666666666666665544 24556666666666655544444432 


Q ss_pred             --CCCCcEEeccCc
Q 043683          174 --PCKLHELDAHHC  185 (256)
Q Consensus       174 --l~~L~~L~l~~~  185 (256)
                        ..+|++|++++|
T Consensus       221 ~~~~~L~~L~l~~n  234 (477)
T 2id5_A          221 LYGLNLTSLSITHC  234 (477)
T ss_dssp             TTTCCCSEEEEESS
T ss_pred             ccCccccEEECcCC
Confidence              224444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.28  E-value=5.1e-12  Score=112.14  Aligned_cols=132  Identities=19%  Similarity=0.208  Sum_probs=97.8

Q ss_pred             EeeCCCCeeeecChHHHH-hh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc
Q 043683           43 CLGMSKVKEIHLNPDTFR-KM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH  117 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~-~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~  117 (256)
                      .+++++++...+....|. ++  |++|++++|.++.+++. | .+++|++|+|++|+++.+                   
T Consensus        43 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-------------------  103 (361)
T 2xot_A           43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-------------------  103 (361)
T ss_dssp             EEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------------------
T ss_pred             EEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-------------------
Confidence            355666665556666565 44  88888888888888765 5 788888888888887653                   


Q ss_pred             cCccccccccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCcccCCC-------CCCCcEEeccCccccc
Q 043683          118 LNTLVLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSLPKL-------PCKLHELDAHHCTALE  189 (256)
Q Consensus       118 L~~L~lp~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~-------l~~L~~L~l~~~~~l~  189 (256)
                           .+..|..+++|++|++++|+++.+ |..+..+++|+.|++++ +.+..+|..       +++|++|++++|. +.
T Consensus       104 -----~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~  176 (361)
T 2xot_A          104 -----DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNK-LK  176 (361)
T ss_dssp             -----CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSC-CC
T ss_pred             -----CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCC-CC
Confidence                 134578889999999999999977 46788999999999998 557777753       6789999999865 56


Q ss_pred             cccc-chhchhh
Q 043683          190 SLSG-LFSSFEA  200 (256)
Q Consensus       190 ~~p~-~~~~l~~  200 (256)
                      .+|. .+..+..
T Consensus       177 ~l~~~~~~~l~~  188 (361)
T 2xot_A          177 KLPLTDLQKLPA  188 (361)
T ss_dssp             CCCHHHHHHSCH
T ss_pred             ccCHHHhhhccH
Confidence            6653 4544443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.27  E-value=3e-12  Score=102.06  Aligned_cols=97  Identities=18%  Similarity=0.264  Sum_probs=84.7

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccc-cCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPEN-IGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~-~~~l~~L~~L~l~~  140 (256)
                      |++|++++|.++.+ +.+ .+++|++|++++|.++.+                         |.. ++.+++|++|++++
T Consensus        44 L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~-------------------------~~~~~~~l~~L~~L~L~~   97 (176)
T 1a9n_A           44 FDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRI-------------------------GEGLDQALPDLTELILTN   97 (176)
T ss_dssp             CSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEE-------------------------CSCHHHHCTTCCEEECCS
T ss_pred             CCEEECCCCCCCcc-cccccCCCCCEEECCCCccccc-------------------------CcchhhcCCCCCEEECCC
Confidence            99999999999998 567 999999999999998754                         433 37889999999999


Q ss_pred             CCCccccc--cccCCCCCCEEeeccCcCCcccCC-----C--CCCCcEEeccCcc
Q 043683          141 NNFERIPE--SVIQLSKLGRLCLRYWERLQSLPK-----L--PCKLHELDAHHCT  186 (256)
Q Consensus       141 n~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~-----~--l~~L~~L~l~~~~  186 (256)
                      |.++.+|.  .++.+++|+.|++++|. +..+|.     .  +++|++|+++.|.
T Consensus        98 N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           98 NSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            99999997  89999999999999854 677886     2  8899999998865

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.26  E-value=6.3e-12  Score=102.03  Aligned_cols=145  Identities=12%  Similarity=0.151  Sum_probs=88.5

Q ss_pred             eecChHHHHhhhhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCC
Q 043683           52 IHLNPDTFRKMLRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQL  130 (256)
Q Consensus        52 ~~l~~~~f~~lL~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l  130 (256)
                      ..+....|...++.. +..+....+  .. .+++|++|++++|.++.+. .+.. +..+..+.++++  .+..+..+..+
T Consensus        15 ~~~pd~~~~~~~~~~-~~~~~~~~i--~~~~l~~L~~L~l~~n~i~~l~-~l~~-l~~L~~L~l~~n--~~~~~~~l~~l   87 (197)
T 4ezg_A           15 VNIPDSTFKAYLNGL-LGQSSTANI--TEAQMNSLTYITLANINVTDLT-GIEY-AHNIKDLTINNI--HATNYNPISGL   87 (197)
T ss_dssp             CCCCCHHHHHHHHHH-HTCCTTCCC--BHHHHHTCCEEEEESSCCSCCT-TGGG-CTTCSEEEEESC--CCSCCGGGTTC
T ss_pred             eecCcHHHHHHHHHH-hCCCccccC--ChhhcCCccEEeccCCCccChH-HHhc-CCCCCEEEccCC--CCCcchhhhcC
Confidence            445556666553322 233333333  33 7899999999999987542 2222 122222222222  11223467788


Q ss_pred             CCCcEEEccCCCCcc-ccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683          131 SSLGKLDLQKNNFER-IPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTQY  204 (256)
Q Consensus       131 ~~L~~L~l~~n~l~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l  204 (256)
                      ++|++|++++|+++. .|..++.+++|++|++++|......|..   +++|++|++++|..+..+| .+..+++++.+
T Consensus        88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L  164 (197)
T 4ezg_A           88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL  164 (197)
T ss_dssp             TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEE
T ss_pred             CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEE
Confidence            888888888888874 6677888888888888885533333332   7788888888876566666 45555555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.26  E-value=2.7e-12  Score=126.13  Aligned_cols=129  Identities=22%  Similarity=0.347  Sum_probs=73.1

Q ss_pred             hhhhhccCCC-CCccCCcc-ccCCccEEeCcCCc-chh--hHHHHHHh------cccCCCCchhhc-cCcccccc--ccC
Q 043683           63 LRYFHWHGCP-LKSLPSNI-HLEKLVLLEMPHSN-IQQ--LLDSVRGI------LTRTPNTPLGQH-LNTLVLPE--NIG  128 (256)
Q Consensus        63 L~~L~ls~n~-l~~lp~~~-~l~~L~~L~L~~n~-l~~--l~~~L~~L------l~~lp~~~l~~~-L~~L~lp~--~~~  128 (256)
                      |++|++++|. .+.+|..+ .+++|++|++++|+ +++  ++..+..+      +..+..+.++++ ++  .+|.  .++
T Consensus       493 L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~  570 (876)
T 4ecn_A          493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQ  570 (876)
T ss_dssp             CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHT
T ss_pred             CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhh
Confidence            9999999998 67889888 99999999999998 875  43333321      112222222222 22  3344  555


Q ss_pred             CCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC---CCC-CcEEeccCcccccccccchh
Q 043683          129 QLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCK-LHELDAHHCTALESLSGLFS  196 (256)
Q Consensus       129 ~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~-L~~L~l~~~~~l~~~p~~~~  196 (256)
                      .+++|++|++++|+++.+| .++.+++|+.|++++|. +..+|..   +++ |++|++++|. +..+|..+.
T Consensus       571 ~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~  639 (876)
T 4ecn_A          571 KMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFN  639 (876)
T ss_dssp             TCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCC
T ss_pred             cCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCchhhh
Confidence            5555555555555555555 55555555555555533 3355543   344 5555555543 334444433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.26  E-value=2.2e-11  Score=113.03  Aligned_cols=149  Identities=11%  Similarity=0.184  Sum_probs=84.0

Q ss_pred             ecChHHHHhh--hhhhhccCCCCCc-cC---Ccc-ccCCccEEeCcCCcchhhHH---HHHHhcccCCCCchhhc-cCcc
Q 043683           53 HLNPDTFRKM--LRYFHWHGCPLKS-LP---SNI-HLEKLVLLEMPHSNIQQLLD---SVRGILTRTPNTPLGQH-LNTL  121 (256)
Q Consensus        53 ~l~~~~f~~l--L~~L~ls~n~l~~-lp---~~~-~l~~L~~L~L~~n~l~~l~~---~L~~Ll~~lp~~~l~~~-L~~L  121 (256)
                      .+....|.++  |++|++++|.+.. +|   ..+ .+++|++|++++|.++.+..   .+.. +..+..+.++++ ++  
T Consensus       324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-l~~L~~L~Ls~N~l~--  400 (549)
T 2z81_A          324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT-LKNLTSLDISRNTFH--  400 (549)
T ss_dssp             CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG-CTTCCEEECTTCCCC--
T ss_pred             cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc-CCCCCEEECCCCCCc--
Confidence            3444444444  6777777777554 22   224 56777777777777654421   1111 122222222222 22  


Q ss_pred             ccccccCCCCCCcEEEccCCCCccccccc------------------cCCCCCCEEeeccCcCCcccCCC--CCCCcEEe
Q 043683          122 VLPENIGQLSSLGKLDLQKNNFERIPESV------------------IQLSKLGRLCLRYWERLQSLPKL--PCKLHELD  181 (256)
Q Consensus       122 ~lp~~~~~l~~L~~L~l~~n~l~~lp~~i------------------~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~  181 (256)
                      .+|..++.+++|++|++++|+++.+|..+                  +.+++|++|++++| .++.+|..  +++|++|+
T Consensus       401 ~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~  479 (549)
T 2z81_A          401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMK  479 (549)
T ss_dssp             CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEE
T ss_pred             cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCcccCccCCEEe
Confidence            34555666666666666666665554332                  25677888888874 46677765  77888888


Q ss_pred             ccCcccccccccchhchhhhhhcc
Q 043683          182 AHHCTALESLSGLFSSFEARTQYF  205 (256)
Q Consensus       182 l~~~~~l~~~p~~~~~l~~l~~l~  205 (256)
                      +++|......|..++.+++++.+.
T Consensus       480 Ls~N~l~~~~~~~~~~l~~L~~L~  503 (549)
T 2z81_A          480 ISRNQLKSVPDGIFDRLTSLQKIW  503 (549)
T ss_dssp             CCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred             cCCCccCCcCHHHHhcCcccCEEE
Confidence            888764444455577776666443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.26  E-value=1.9e-11  Score=97.11  Aligned_cols=98  Identities=24%  Similarity=0.339  Sum_probs=83.6

Q ss_pred             hhhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC
Q 043683           63 LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN  142 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~  142 (256)
                      .+.+++++|.++.+|..+ .++|++|++++|.++++                        .|..|+.+++|++|++++|+
T Consensus        11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~------------------------~~~~~~~l~~L~~L~Ls~N~   65 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKL------------------------EPGVFDRLTQLTRLDLDNNQ   65 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCC------------------------CTTTTTTCTTCSEEECCSSC
T ss_pred             CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCcc------------------------ChhhhcCcccCCEEECCCCC
Confidence            467889999999999877 48899999999998763                        25668899999999999999


Q ss_pred             Ccccccc-ccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcc
Q 043683          143 FERIPES-VIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCT  186 (256)
Q Consensus       143 l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~  186 (256)
                      ++.+|+. +..+++|++|++++ +.++.+|..    +++|++|++++|+
T Consensus        66 l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           66 LTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCccChhhccCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            9998864 68999999999998 557778763    7899999999876

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.26  E-value=2e-11  Score=106.56  Aligned_cols=128  Identities=18%  Similarity=0.310  Sum_probs=89.2

Q ss_pred             hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh------HHHHHHh---------cccCCCCchhhccCcc----
Q 043683           63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL------LDSVRGI---------LTRTPNTPLGQHLNTL----  121 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l------~~~L~~L---------l~~lp~~~l~~~L~~L----  121 (256)
                      |++|++++|.++.++.. + .+++|++|++++|.++..      +.++..|         ++.+|.. +...|+.|    
T Consensus       123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~  201 (330)
T 1xku_A          123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-LPPSLTELHLDG  201 (330)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-CCTTCSEEECTT
T ss_pred             ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-ccccCCEEECCC
Confidence            77777777777776654 4 677777777777766431      2222222         3333332 11224444    


Q ss_pred             -----ccccccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccc
Q 043683          122 -----VLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLS  192 (256)
Q Consensus       122 -----~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p  192 (256)
                           ..|..++.+++|++|++++|.++.++. .+..+++|++|++++| .+..+|..   +++|++|++++|. +..+|
T Consensus       202 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~  279 (330)
T 1xku_A          202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIG  279 (330)
T ss_dssp             SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccC
Confidence                 236778999999999999999997764 7899999999999985 57788875   7899999999876 55555


Q ss_pred             c
Q 043683          193 G  193 (256)
Q Consensus       193 ~  193 (256)
                      .
T Consensus       280 ~  280 (330)
T 1xku_A          280 S  280 (330)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.25  E-value=4.5e-12  Score=110.35  Aligned_cols=152  Identities=13%  Similarity=0.168  Sum_probs=105.9

Q ss_pred             CCeeeecChHHHHhh-------hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhh-HHHHH-HhcccCCCCchhh
Q 043683           48 KVKEIHLNPDTFRKM-------LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQL-LDSVR-GILTRTPNTPLGQ  116 (256)
Q Consensus        48 ~l~~~~l~~~~f~~l-------L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l-~~~L~-~Ll~~lp~~~l~~  116 (256)
                      +++.+.+..+.+.+.       |++|++++|.++.+++ .+ .+++|++|++++|.++.+ +..+. . +..+..+.+++
T Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-l~~L~~L~L~~  178 (317)
T 3o53_A          100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS-SDTLEHLNLQY  178 (317)
T ss_dssp             TCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGG-TTTCCEEECTT
T ss_pred             CcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhc-cCcCCEEECCC
Confidence            344455544444333       8889999999888765 45 789999999999988764 11111 1 11122222222


Q ss_pred             c-cCccccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccc-ccc
Q 043683          117 H-LNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTAL-ESL  191 (256)
Q Consensus       117 ~-L~~L~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l-~~~  191 (256)
                      + ++.+  | ....+++|++|++++|+++.+|+.+..+++|+.|++++| .+..+|..   +++|++|++++|+.. ..+
T Consensus       179 N~l~~~--~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~  254 (317)
T 3o53_A          179 NFIYDV--K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTL  254 (317)
T ss_dssp             SCCCEE--E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred             CcCccc--c-cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCH
Confidence            2 2222  2 224589999999999999999988999999999999985 57788876   789999999998765 467


Q ss_pred             ccchhchhhhhhc
Q 043683          192 SGLFSSFEARTQY  204 (256)
Q Consensus       192 p~~~~~l~~l~~l  204 (256)
                      |.++..+..++.+
T Consensus       255 ~~~~~~~~~L~~l  267 (317)
T 3o53_A          255 RDFFSKNQRVQTV  267 (317)
T ss_dssp             HHHHHTCHHHHHH
T ss_pred             HHHHhccccceEE
Confidence            7777776665544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.25  E-value=8e-12  Score=110.16  Aligned_cols=117  Identities=19%  Similarity=0.234  Sum_probs=98.7

Q ss_pred             hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |++|++++|.++.+|. .+ .+++|++|++++|.++++                        .|..++.+++|++|++++
T Consensus        54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------------~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI------------------------EEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE------------------------CTTTTTTCTTCCEEECCS
T ss_pred             CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc------------------------CHhhcCCCCCCCEEECCC
Confidence            9999999999999988 46 899999999999998753                        256688999999999999


Q ss_pred             CCCcccccc-ccCCCCCCEEeeccCcCCcccCC--C---CCCCcEEeccCccccccc-ccchhchhhhhhc
Q 043683          141 NNFERIPES-VIQLSKLGRLCLRYWERLQSLPK--L---PCKLHELDAHHCTALESL-SGLFSSFEARTQY  204 (256)
Q Consensus       141 n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~--~---l~~L~~L~l~~~~~l~~~-p~~~~~l~~l~~l  204 (256)
                      |+++.+|.. ++++++|++|++++| .++.+|.  .   +++|++|++++|..+..+ |..++.+++++.+
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  179 (353)
T 2z80_A          110 NYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL  179 (353)
T ss_dssp             SCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred             CcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence            999999865 899999999999984 5778887  2   889999999998666666 4567776666644

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.25  E-value=1.8e-11  Score=104.12  Aligned_cols=136  Identities=21%  Similarity=0.250  Sum_probs=74.8

Q ss_pred             hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHH-HHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEc
Q 043683           63 LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLD-SVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDL  138 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~-~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l  138 (256)
                      +++|++++|.++.++. .+ .+++|++|++++|.++.+.. .+.. +..+..+.++++ ++. ..+..+..+++|++|++
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEEC
T ss_pred             ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC-CcCCCEEECCCCccCc-cChhhhcCCccccEEEC
Confidence            9999999999999987 56 89999999999999876411 0000 001111111111 110 11244555666666666


Q ss_pred             cCCCCccccc-cccCCCCCCEEeeccCcCCcc--cCCC---CCCCcEEeccCcccccccccchhchhhh
Q 043683          139 QKNNFERIPE-SVIQLSKLGRLCLRYWERLQS--LPKL---PCKLHELDAHHCTALESLSGLFSSFEAR  201 (256)
Q Consensus       139 ~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l  201 (256)
                      ++|+++.++. .++.+++|++|++++|. +..  +|..   +++|++|++++|......+..+..+..+
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  175 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence            6666665543 45566666666666533 333  3333   5566666666654322223344444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.25  E-value=1.9e-11  Score=103.93  Aligned_cols=139  Identities=26%  Similarity=0.352  Sum_probs=96.9

Q ss_pred             eCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHH-HHHhcccCCCCchhhc-c
Q 043683           45 GMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDS-VRGILTRTPNTPLGQH-L  118 (256)
Q Consensus        45 ~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~-L~~Ll~~lp~~~l~~~-L  118 (256)
                      +++++....+....|.++  |++|++++|.++.+|.. + .+++|++|++++|.++.+.+. +.. +..+..+.++++ +
T Consensus        67 ~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l  145 (270)
T 2o6q_A           67 YLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-LTKLTYLSLGYNEL  145 (270)
T ss_dssp             ECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCC
T ss_pred             ECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-CcCCCEEECCCCcC
Confidence            334444444445555555  99999999999998876 4 789999999999988765111 111 111111111111 1


Q ss_pred             Cccccc-cccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccc
Q 043683          119 NTLVLP-ENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTA  187 (256)
Q Consensus       119 ~~L~lp-~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~  187 (256)
                      +  .+| ..++.+++|++|++++|+++.+|+ .+..+++|++|++++| .+..+|..    +++|++|++++|+.
T Consensus       146 ~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          146 Q--SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             C--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             C--ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence            1  223 347889999999999999998885 5889999999999985 57778764    78999999998763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.25  E-value=6.1e-12  Score=109.27  Aligned_cols=135  Identities=17%  Similarity=0.278  Sum_probs=85.8

Q ss_pred             HHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCc
Q 043683           59 FRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLG  134 (256)
Q Consensus        59 f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~  134 (256)
                      |.++  |++|++++|.++.+| .+ .+++|++|++++|.++.+.. +.. +..+..+.++++ ++  .++. ++.+++|+
T Consensus        81 ~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~-l~~L~~L~l~~n~l~--~~~~-l~~l~~L~  154 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAG-LSNLQVLYLDLNQIT--NISP-LAGLTNLQ  154 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTT-CTTCCEEECCSSCCC--CCGG-GGGCTTCC
T ss_pred             HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcC-CCCCCEEECCCCccC--cCcc-ccCCCCcc
Confidence            4444  899999999988886 46 88999999999998876511 111 111111112211 11  1122 56777888


Q ss_pred             EEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhhh
Q 043683          135 KLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEARTQ  203 (256)
Q Consensus       135 ~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~  203 (256)
                      +|++++|+++.++. +..+++|+.|++++| .+..++..  +++|++|++++|. +..++. +..+++++.
T Consensus       155 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~  221 (308)
T 1h6u_A          155 YLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFI  221 (308)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCE
T ss_pred             EEEccCCcCCCChh-hcCCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCCc-cCcccc-ccCCCCCCE
Confidence            88888888877775 777888888888774 45666554  6778888887764 444542 455554443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.24  E-value=1.3e-11  Score=107.92  Aligned_cols=144  Identities=22%  Similarity=0.322  Sum_probs=98.1

Q ss_pred             CCCCeeeecChHHHHhh-------hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh------HH--HHHHh---
Q 043683           46 MSKVKEIHLNPDTFRKM-------LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL------LD--SVRGI---  105 (256)
Q Consensus        46 l~~l~~~~l~~~~f~~l-------L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l------~~--~L~~L---  105 (256)
                      +.+++.+++..+.+..+       |++|++++|.++.+|.. + .+++|++|++++|.++..      +.  +|+.|   
T Consensus       101 l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~  180 (332)
T 2ft3_A          101 LRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS  180 (332)
T ss_dssp             CTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCC
T ss_pred             cCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECc
Confidence            34445555444433332       99999999999999886 5 899999999999988642      11  22332   


Q ss_pred             ---cccCCCCchhhccCcc---------ccccccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCcccCC
Q 043683          106 ---LTRTPNTPLGQHLNTL---------VLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPK  172 (256)
Q Consensus       106 ---l~~lp~~~l~~~L~~L---------~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~  172 (256)
                         ++.+|.. +...|+.|         ..|..+..+++|++|++++|+++.+++ .++.+++|++|++++| .+..+|.
T Consensus       181 ~n~l~~l~~~-~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~  258 (332)
T 2ft3_A          181 EAKLTGIPKD-LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPA  258 (332)
T ss_dssp             SSBCSSCCSS-SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCT
T ss_pred             CCCCCccCcc-ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecCh
Confidence               3333321 11223444         224667888888899998888887764 6888888999998874 5778887


Q ss_pred             C---CCCCcEEeccCcccccccc
Q 043683          173 L---PCKLHELDAHHCTALESLS  192 (256)
Q Consensus       173 ~---l~~L~~L~l~~~~~l~~~p  192 (256)
                      .   +++|++|++++|. +..+|
T Consensus       259 ~l~~l~~L~~L~l~~N~-l~~~~  280 (332)
T 2ft3_A          259 GLPDLKLLQVVYLHTNN-ITKVG  280 (332)
T ss_dssp             TGGGCTTCCEEECCSSC-CCBCC
T ss_pred             hhhcCccCCEEECCCCC-CCccC
Confidence            5   7788888888865 44444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.24  E-value=3.1e-11  Score=107.73  Aligned_cols=55  Identities=9%  Similarity=0.154  Sum_probs=43.1

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhh
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQL   98 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l   98 (256)
                      +++++.....+....|.++  |++|++++|.++.+|+ .+ .+++|++|++++|.++.+
T Consensus        50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~  108 (390)
T 3o6n_A           50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL  108 (390)
T ss_dssp             EEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             EEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC
Confidence            3444455556777778877  9999999999988876 56 899999999999988764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.24  E-value=3.1e-11  Score=118.68  Aligned_cols=73  Identities=19%  Similarity=0.276  Sum_probs=59.2

Q ss_pred             cccccC--CCCCCcEEEccCCCCccccccccCCCCCCEEeecc------CcCCcccCCC---CCCCcEEeccCccccccc
Q 043683          123 LPENIG--QLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRY------WERLQSLPKL---PCKLHELDAHHCTALESL  191 (256)
Q Consensus       123 lp~~~~--~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~------~~~l~~lp~~---l~~L~~L~l~~~~~l~~~  191 (256)
                      +|..+.  .+++|+.|++++|+++.+|..++.+++|+.|++++      |...+.+|..   +++|+.|++++|. ++.+
T Consensus       743 lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~I  821 (876)
T 4ecn_A          743 LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKV  821 (876)
T ss_dssp             CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBC
T ss_pred             chHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCcc
Confidence            477776  88899999999999988888888999999999876      5556677765   7889999999876 4888


Q ss_pred             ccchh
Q 043683          192 SGLFS  196 (256)
Q Consensus       192 p~~~~  196 (256)
                      |..+.
T Consensus       822 p~~l~  826 (876)
T 4ecn_A          822 DEKLT  826 (876)
T ss_dssp             CSCCC
T ss_pred             CHhhc
Confidence            88754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.24  E-value=1.3e-11  Score=114.01  Aligned_cols=128  Identities=21%  Similarity=0.156  Sum_probs=92.0

Q ss_pred             EeeCCCCeeeecChHHHHhhhhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCc
Q 043683           43 CLGMSKVKEIHLNPDTFRKMLRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNT  120 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~~lL~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~  120 (256)
                      .+|++++....+....+ .-+++|++++|.+..+++ .| .+++|++|++++|+++++                      
T Consensus         4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------   60 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL----------------------   60 (520)
T ss_dssp             EEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE----------------------
T ss_pred             eEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCc----------------------
Confidence            34555544434433222 338888888888888774 46 788888888888888653                      


Q ss_pred             cccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcc--cCCC---CCCCcEEeccCcccccccccch
Q 043683          121 LVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQS--LPKL---PCKLHELDAHHCTALESLSGLF  195 (256)
Q Consensus       121 L~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~--lp~~---l~~L~~L~l~~~~~l~~~p~~~  195 (256)
                        .|..|+.+++|++|++++|+++.+|..  .+++|++|++++|. +..  +|..   +++|++|++++|....   ..+
T Consensus        61 --~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~  132 (520)
T 2z7x_B           61 --DISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK---SSV  132 (520)
T ss_dssp             --EGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG---GGG
T ss_pred             --ChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccch---hhc
Confidence              367788999999999999999999877  89999999999855 444  4544   8899999999876332   344


Q ss_pred             hchhhh
Q 043683          196 SSFEAR  201 (256)
Q Consensus       196 ~~l~~l  201 (256)
                      ..++.+
T Consensus       133 ~~l~~L  138 (520)
T 2z7x_B          133 LPIAHL  138 (520)
T ss_dssp             GGGTTS
T ss_pred             cccccc
Confidence            455544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.24  E-value=1.4e-11  Score=115.82  Aligned_cols=110  Identities=15%  Similarity=0.211  Sum_probs=92.0

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCc
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNT  120 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~  120 (256)
                      ++++++....+..  |.++  |++|++++|.++.+|..+ .+++|++|+|++|.++++                      
T Consensus       446 L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l----------------------  501 (567)
T 1dce_A          446 LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV----------------------  501 (567)
T ss_dssp             EECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC----------------------
T ss_pred             EEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC----------------------
Confidence            5566655555543  6666  999999999999999999 999999999999999753                      


Q ss_pred             cccccccCCCCCCcEEEccCCCCccc--cccccCCCCCCEEeeccCcCCcccCCC-------CCCCcEEec
Q 043683          121 LVLPENIGQLSSLGKLDLQKNNFERI--PESVIQLSKLGRLCLRYWERLQSLPKL-------PCKLHELDA  182 (256)
Q Consensus       121 L~lp~~~~~l~~L~~L~l~~n~l~~l--p~~i~~l~~L~~L~l~~~~~l~~lp~~-------l~~L~~L~l  182 (256)
                         | .++.+++|++|++++|+++.+  |..++.+++|+.|++++|. +..+|+.       +++|+.|++
T Consensus       502 ---p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          502 ---D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             ---G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             ---c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence               6 779999999999999999988  8899999999999999955 6666553       678888753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.23  E-value=3.3e-11  Score=95.94  Aligned_cols=100  Identities=25%  Similarity=0.339  Sum_probs=78.7

Q ss_pred             hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      +++|++++|.++.+|+. + .+++|++|++++|.++.+                        .+..++.+++|++|++++
T Consensus        30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL------------------------PDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC------------------------CTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe------------------------ChhHccCCCccCEEECCC
Confidence            88888988888888775 4 788999999999888653                        123457888899999999


Q ss_pred             CCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccc
Q 043683          141 NNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTA  187 (256)
Q Consensus       141 n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~  187 (256)
                      |+++.+|+ .+..+++|++|++++| .+..+|..    +++|++|++++|+.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence            99988775 4678899999999884 56777764    67888999988753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.23  E-value=2.4e-11  Score=110.22  Aligned_cols=115  Identities=23%  Similarity=0.288  Sum_probs=69.7

Q ss_pred             hhhhhccCCCCCccC-Ccc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLP-SNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp-~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |++|++++|.+..++ ..+ .+++|++|++++|.++++                        .|..++.+++|++|++++
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------------------------~~~~~~~l~~L~~L~Ls~  332 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI------------------------DDNAFWGLTHLLKLNLSQ  332 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE------------------------CTTTTTTCTTCCEEECCS
T ss_pred             ceEEEecCccccccchhhcccCCCCCEEECCCCccccc------------------------ChhHhcCcccCCEEECCC
Confidence            778888888876654 445 778888888888877653                        244556666666666666


Q ss_pred             CCCccc-cccccCCCCCCEEeeccCcCCccc-CCC---CCCCcEEeccCccccccccc-chhchhhhhh
Q 043683          141 NNFERI-PESVIQLSKLGRLCLRYWERLQSL-PKL---PCKLHELDAHHCTALESLSG-LFSSFEARTQ  203 (256)
Q Consensus       141 n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~l-p~~---l~~L~~L~l~~~~~l~~~p~-~~~~l~~l~~  203 (256)
                      |.++.+ |..++.+++|++|++++|. +..+ |..   +++|++|++++|. +..+|. .+..+++++.
T Consensus       333 N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~  399 (455)
T 3v47_A          333 NFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQK  399 (455)
T ss_dssp             SCCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCE
T ss_pred             CccCCcChhHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccE
Confidence            666654 3455666666666666643 3333 332   5666666666654 333443 3345544443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.22  E-value=4.2e-11  Score=113.00  Aligned_cols=55  Identities=9%  Similarity=0.154  Sum_probs=43.2

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhh
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQL   98 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l   98 (256)
                      +++++.....+.+..|.++  |++|++++|.++.+|+ .| .+++|++|++++|.++.+
T Consensus        56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  114 (597)
T 3oja_B           56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL  114 (597)
T ss_dssp             EEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             EEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC
Confidence            3444555556667777777  9999999999988876 56 899999999999998764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.22  E-value=2.4e-11  Score=103.30  Aligned_cols=108  Identities=23%  Similarity=0.255  Sum_probs=66.3

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCcc--------ccccccCCCCCC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTL--------VLPENIGQLSSL  133 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L--------~lp~~~~~l~~L  133 (256)
                      |++|++++|.++.+|+ + .+++|++|++++|+++.+           |.+.. ..|+.|        .+ ..++.+++|
T Consensus        65 L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l-----------~~~~~-~~L~~L~L~~N~l~~~-~~l~~l~~L  130 (263)
T 1xeu_A           65 LKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNL-----------NGIPS-ACLSRLFLDNNELRDT-DSLIHLKNL  130 (263)
T ss_dssp             CCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCC-----------TTCCC-SSCCEEECCSSCCSBS-GGGTTCTTC
T ss_pred             CCEEECCCCccCCChh-hccCCCCCEEECCCCccCCc-----------Ccccc-CcccEEEccCCccCCC-hhhcCcccc
Confidence            7777777777777766 6 777777777777776543           21110 111222        11 245667777


Q ss_pred             cEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcc
Q 043683          134 GKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCT  186 (256)
Q Consensus       134 ~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~  186 (256)
                      ++|++++|+++.+| .++.+++|+.|++++| .+..++..  +++|++|++++|.
T Consensus       131 ~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          131 EILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             CEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBCTTSTTCCCCCEEEEEEEE
T ss_pred             cEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcchHHhccCCCCCEEeCCCCc
Confidence            77777777777665 5667777777777763 34454433  6677777777654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.21  E-value=3.6e-12  Score=106.33  Aligned_cols=114  Identities=17%  Similarity=0.234  Sum_probs=67.7

Q ss_pred             eeecChHHHHhh--hhhhhccC-CCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCcccccc
Q 043683           51 EIHLNPDTFRKM--LRYFHWHG-CPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPE  125 (256)
Q Consensus        51 ~~~l~~~~f~~l--L~~L~ls~-n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~  125 (256)
                      ...+.+..|.++  |++|++++ |.++.+|+. | .+++|++|++++|.++.+                         |.
T Consensus        68 l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~l-------------------------p~  122 (239)
T 2xwt_C           68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF-------------------------PD  122 (239)
T ss_dssp             CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSC-------------------------CC
T ss_pred             cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccc-------------------------cc
Confidence            334555556555  99999998 899999865 5 899999999999998753                         22


Q ss_pred             ccCCCCCCc---EEEccCC-CCccccc-cccCCCCCC-EEeeccCcCCcccCCC---CCCCcEEeccCccccccc
Q 043683          126 NIGQLSSLG---KLDLQKN-NFERIPE-SVIQLSKLG-RLCLRYWERLQSLPKL---PCKLHELDAHHCTALESL  191 (256)
Q Consensus       126 ~~~~l~~L~---~L~l~~n-~l~~lp~-~i~~l~~L~-~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~  191 (256)
                       ++.+++|+   +|++++| +++.+|+ .+.++++|+ .|++++| .+..+|..   .++|++|++++|..+..+
T Consensus       123 -~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i  195 (239)
T 2xwt_C          123 -LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVI  195 (239)
T ss_dssp             -CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEE
T ss_pred             -cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccC
Confidence             34444444   5555555 5554443 244555555 5555542 23444433   234555555554323333

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.21  E-value=2.1e-11  Score=103.64  Aligned_cols=133  Identities=23%  Similarity=0.376  Sum_probs=85.4

Q ss_pred             HHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCc
Q 043683           59 FRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLG  134 (256)
Q Consensus        59 f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~  134 (256)
                      +.++  |++|++++|.++.+| .+ .+++|++|++++|.++.+.+ +.. +..+..+.++++ ++.  +|.. .. ++|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~-l~~L~~L~L~~N~l~~--l~~~-~~-~~L~  109 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKD-LTKLEELSVNRNRLKN--LNGI-PS-ACLS  109 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTT-CSSCCEEECCSSCCSC--CTTC-CC-SSCC
T ss_pred             hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hcc-CCCCCEEECCCCccCC--cCcc-cc-Cccc
Confidence            4555  999999999999998 67 89999999999999887522 111 122222222222 222  2222 22 6777


Q ss_pred             EEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhh
Q 043683          135 KLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEART  202 (256)
Q Consensus       135 ~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~  202 (256)
                      +|++++|+++.+| .++.+++|+.|++++ +.++.+|..  +++|++|++++|. +..+ ..+..+.+++
T Consensus       110 ~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~  175 (263)
T 1xeu_A          110 RLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVMLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVN  175 (263)
T ss_dssp             EEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGGGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCC
T ss_pred             EEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChHHccCCCCCEEECCCCc-Ccch-HHhccCCCCC
Confidence            7777777777765 577777888888877 446666644  6778888887764 3434 4444444444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.20  E-value=1.6e-11  Score=118.78  Aligned_cols=115  Identities=18%  Similarity=0.091  Sum_probs=87.3

Q ss_pred             hhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC
Q 043683           64 RYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN  142 (256)
Q Consensus        64 ~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~  142 (256)
                      ..++++.|.+...|..+ .+++|+.|+|++|.+..+                         |..+..+++|++|+|++|.
T Consensus       204 ~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-------------------------~~~~~~l~~L~~L~Ls~N~  258 (727)
T 4b8c_D          204 DEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNI-------------------------SANIFKYDFLTRLYLNGNS  258 (727)
T ss_dssp             ------------------CCCCCCEEECTTSCCSCC-------------------------CGGGGGCCSCSCCBCTTSC
T ss_pred             cCccccccceecChhhhccCCCCcEEECCCCCCCCC-------------------------ChhhcCCCCCCEEEeeCCc
Confidence            33344444445445567 899999999999998753                         7777889999999999999


Q ss_pred             CccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhhhhhcc
Q 043683          143 FERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTQYF  205 (256)
Q Consensus       143 l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l~  205 (256)
                      ++.+|..++.+++|++|+|++|. +..+|..   +++|++|++++|. +..+|..++.+++|..|.
T Consensus       259 l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~  322 (727)
T 4b8c_D          259 LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLG  322 (727)
T ss_dssp             CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEE
T ss_pred             CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEe
Confidence            99999999999999999999854 7799986   8899999999974 789999999988887654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.20  E-value=8.5e-12  Score=96.48  Aligned_cols=96  Identities=24%  Similarity=0.301  Sum_probs=82.4

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN  141 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n  141 (256)
                      |++|++++|.++.+ ..+ .+++|++|++++|.++..                        +|..++.+++|++|++++|
T Consensus        44 L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~------------------------~~~~~~~l~~L~~L~ls~N   98 (149)
T 2je0_A           44 LEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG------------------------LEVLAEKCPNLTHLNLSGN   98 (149)
T ss_dssp             CCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC------------------------THHHHHHCTTCCEEECTTS
T ss_pred             CcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch------------------------HHHHhhhCCCCCEEECCCC
Confidence            99999999999988 667 899999999999999762                        2555667899999999999


Q ss_pred             CCcccc--ccccCCCCCCEEeeccCcCCcccCC----C---CCCCcEEeccC
Q 043683          142 NFERIP--ESVIQLSKLGRLCLRYWERLQSLPK----L---PCKLHELDAHH  184 (256)
Q Consensus       142 ~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~----~---l~~L~~L~l~~  184 (256)
                      .++.+|  ..++.+++|++|++++| .+..+|.    .   +++|++|++++
T Consensus        99 ~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           99 KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence            999876  78999999999999985 5777776    2   88999998863

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.20  E-value=1.6e-11  Score=105.83  Aligned_cols=117  Identities=24%  Similarity=0.363  Sum_probs=89.5

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |++|++++|.++.+|. + .+++|++|++++|.++.+ +.+.. +..+..+.++++ ++.+   ..++.+++|++|++++
T Consensus        92 L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~-l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~  165 (291)
T 1h6t_A           92 LGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVH-LPQLESLYLGNNKITDI---TVLSRLTKLDTLSLED  165 (291)
T ss_dssp             CCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC-GGGGG-CTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCS
T ss_pred             CCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCC-hhhcC-CCCCCEEEccCCcCCcc---hhhccCCCCCEEEccC
Confidence            9999999999998875 6 899999999999998765 11222 122222222222 2222   4678899999999999


Q ss_pred             CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCccc
Q 043683          141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTA  187 (256)
Q Consensus       141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~  187 (256)
                      |+++.+++ +..+++|+.|++++| .+..+|..  +++|+.|++++|+.
T Consensus       166 N~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          166 NQISDIVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred             Cccccchh-hcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCcc
Confidence            99998886 999999999999985 57778765  88999999998763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.19  E-value=4.1e-11  Score=106.21  Aligned_cols=115  Identities=17%  Similarity=0.177  Sum_probs=93.6

Q ss_pred             hhhhhccCCCCCccCCcc---ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEcc
Q 043683           63 LRYFHWHGCPLKSLPSNI---HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ  139 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~---~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~  139 (256)
                      +++|++++|.++.++...   .+++|++|+|++|+++.+                        .|..|..+++|++|+++
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i------------------------~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI------------------------SSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE------------------------CTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc------------------------ChhhccCCCCCCEEECC
Confidence            899999999999998764   689999999999999764                        24568899999999999


Q ss_pred             CCCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccch----hchhhhhh
Q 043683          140 KNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGLF----SSFEARTQ  203 (256)
Q Consensus       140 ~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~~----~~l~~l~~  203 (256)
                      +|+++.+|+ .+..+.+|+.|++++|. +..++..    +++|++|++++|. +..+|...    ..+.+++.
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~  167 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLML  167 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCE
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCE
Confidence            999998875 68999999999999854 6666442    7899999999975 67777754    44555553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.19  E-value=4.9e-11  Score=113.67  Aligned_cols=148  Identities=20%  Similarity=0.236  Sum_probs=82.7

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc--
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH--  117 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~--  117 (256)
                      ++++.+....+.+..|.++  |++|++++|.+..+++. + .+++|++|++++|.++.+           |.-.++++  
T Consensus        30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-----------~~~~~~~l~~   98 (680)
T 1ziw_A           30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-----------SDKTFAFCTN   98 (680)
T ss_dssp             EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-----------CTTTTTTCTT
T ss_pred             EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-----------ChhhhccCCC
Confidence            3444444444555555555  66666666666555433 4 566666666666665433           11001111  


Q ss_pred             cCcc--------c-cccccCCCCCCcEEEccCCCCccc-cccccCCCCCCEEeeccCcCCcccCCC------CCCCcEEe
Q 043683          118 LNTL--------V-LPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLCLRYWERLQSLPKL------PCKLHELD  181 (256)
Q Consensus       118 L~~L--------~-lp~~~~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~------l~~L~~L~  181 (256)
                      |+.|        . .|..|+.+++|++|++++|.++.+ |..++++++|++|++++|. +..++..      .++|++|+
T Consensus        99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~  177 (680)
T 1ziw_A           99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLE  177 (680)
T ss_dssp             CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEE
T ss_pred             CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEE
Confidence            1111        1 134567777777777777777744 3556777777777777643 4444432      36777777


Q ss_pred             ccCcccccccccchhchhhhhh
Q 043683          182 AHHCTALESLSGLFSSFEARTQ  203 (256)
Q Consensus       182 l~~~~~l~~~p~~~~~l~~l~~  203 (256)
                      +++|......|..+..+..+..
T Consensus       178 L~~n~l~~~~~~~~~~l~~L~~  199 (680)
T 1ziw_A          178 LSSNQIKEFSPGCFHAIGRLFG  199 (680)
T ss_dssp             CTTCCCCCBCTTGGGGSSEECE
T ss_pred             CCCCcccccChhhhhhhhhhhh
Confidence            7776544445555655555544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.18  E-value=4.9e-11  Score=113.68  Aligned_cols=141  Identities=18%  Similarity=0.202  Sum_probs=98.8

Q ss_pred             EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHH-HHHHhcccCCCCchhhc
Q 043683           43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLD-SVRGILTRTPNTPLGQH  117 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~-~L~~Ll~~lp~~~l~~~  117 (256)
                      .++++.+....+.+..|.++  |++|++++|.+..+|+. | .+++|++|++++|.++.+.+ .+.. +..+..+.++++
T Consensus        53 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n  131 (680)
T 1ziw_A           53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK-QKNLITLDLSHN  131 (680)
T ss_dssp             EEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTT-CTTCCEEECCSS
T ss_pred             EEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccc-cCCCCEEECCCC
Confidence            34556555566667788887  99999999999999985 7 89999999999999876411 1111 111111111111


Q ss_pred             -cCccccccccCCCCCCcEEEccCCCCccccc-cc--cCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcc
Q 043683          118 -LNTLVLPENIGQLSSLGKLDLQKNNFERIPE-SV--IQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCT  186 (256)
Q Consensus       118 -L~~L~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i--~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~  186 (256)
                       ++. ..|..++.+++|++|++++|.++.+++ .+  ..+++|+.|++++|. +..++..    +.+|+.|++.++.
T Consensus       132 ~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~  206 (680)
T 1ziw_A          132 GLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQ  206 (680)
T ss_dssp             CCSC-CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCC
T ss_pred             cccc-cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-ccccChhhhhhhhhhhhhhccccc
Confidence             111 236678899999999999999997764 33  356899999999864 5555543    6788999988765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.18  E-value=3.2e-11  Score=111.38  Aligned_cols=128  Identities=20%  Similarity=0.169  Sum_probs=98.8

Q ss_pred             EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCcc-CCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhcc
Q 043683           43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSL-PSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHL  118 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~l-p~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L  118 (256)
                      .++++++....+.+..|.++  |++|++++|.++.+ |..| .+++|++|++++|+++.+                    
T Consensus        25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l--------------------   84 (520)
T 2z7x_B           25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI--------------------   84 (520)
T ss_dssp             EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEE--------------------
T ss_pred             EEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeec--------------------
Confidence            45667777677777888887  99999999999888 5567 999999999999998754                    


Q ss_pred             CccccccccCCCCCCcEEEccCCCCcc--ccccccCCCCCCEEeeccCcCCcccCCC-CCCC--cEEeccCccc--cccc
Q 043683          119 NTLVLPENIGQLSSLGKLDLQKNNFER--IPESVIQLSKLGRLCLRYWERLQSLPKL-PCKL--HELDAHHCTA--LESL  191 (256)
Q Consensus       119 ~~L~lp~~~~~l~~L~~L~l~~n~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L--~~L~l~~~~~--l~~~  191 (256)
                           |..  .+++|++|++++|.++.  +|..++++++|++|++++|. +....-. +++|  ++|++++|..  ....
T Consensus        85 -----p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~  156 (520)
T 2z7x_B           85 -----SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKSSVLPIAHLNISKVLLVLGETYGEKED  156 (520)
T ss_dssp             -----ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGGGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred             -----Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchhhccccccceeeEEEeecccccccccc
Confidence                 555  78889999999998885  56788999999999998854 4332111 6667  8888888765  4556


Q ss_pred             ccchhch
Q 043683          192 SGLFSSF  198 (256)
Q Consensus       192 p~~~~~l  198 (256)
                      |..+..+
T Consensus       157 ~~~l~~l  163 (520)
T 2z7x_B          157 PEGLQDF  163 (520)
T ss_dssp             TTTTTTC
T ss_pred             ccccccc
Confidence            6666553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.18  E-value=2.2e-11  Score=112.41  Aligned_cols=150  Identities=13%  Similarity=0.182  Sum_probs=103.1

Q ss_pred             CCeeeecChHHHHhh-------hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhh-HHHHH-HhcccCCCCchhh
Q 043683           48 KVKEIHLNPDTFRKM-------LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQL-LDSVR-GILTRTPNTPLGQ  116 (256)
Q Consensus        48 ~l~~~~l~~~~f~~l-------L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l-~~~L~-~Ll~~lp~~~l~~  116 (256)
                      +++.++++.+.+.+.       |++|++++|.++.+++ .+ .+++|++|++++|.++.+ +..+. . +..+..+.+++
T Consensus       100 ~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~-l~~L~~L~Ls~  178 (487)
T 3oja_A          100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS-SDTLEHLNLQY  178 (487)
T ss_dssp             TCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG-TTTCCEEECTT
T ss_pred             CcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhh-CCcccEEecCC
Confidence            344444444444333       8888999998887644 56 788999999999988764 22221 1 11222222222


Q ss_pred             c-cCccccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccc-ccc
Q 043683          117 H-LNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTAL-ESL  191 (256)
Q Consensus       117 ~-L~~L~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l-~~~  191 (256)
                      + ++.+  | ....+++|++|++++|.++.+|+.++.+++|+.|++++ +.+..+|..   +++|+.|++++|+.. ..+
T Consensus       179 N~l~~~--~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          179 NFIYDV--K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             SCCCEE--E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred             Cccccc--c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence            2 2211  2 23468999999999999999998999999999999998 457788876   789999999998755 466


Q ss_pred             ccchhchhhhh
Q 043683          192 SGLFSSFEART  202 (256)
Q Consensus       192 p~~~~~l~~l~  202 (256)
                      |.++..+..+.
T Consensus       255 ~~~~~~l~~L~  265 (487)
T 3oja_A          255 RDFFSKNQRVQ  265 (487)
T ss_dssp             HHHHTTCHHHH
T ss_pred             HHHHHhCCCCc
Confidence            66666655544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.17  E-value=5.5e-11  Score=110.64  Aligned_cols=146  Identities=22%  Similarity=0.289  Sum_probs=91.2

Q ss_pred             HHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHH--HHHHhcccCCCCchhhccCccccccccCCCC
Q 043683           57 DTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLD--SVRGILTRTPNTPLGQHLNTLVLPENIGQLS  131 (256)
Q Consensus        57 ~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~--~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~  131 (256)
                      ..|.++  |++|++++|.+..+|+.+ .+++|++|++++|.+....+  .+.. +..+..+.++++--.-..|..++.++
T Consensus       367 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~  445 (570)
T 2z63_A          367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLS  445 (570)
T ss_dssp             HHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTT-CTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             ccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhc-CCCCCEEeCcCCcccccchhhhhcCC
Confidence            344444  777788877777777667 77788888888777654310  0000 01111111111100003466778888


Q ss_pred             CCcEEEccCCCCc--cccccccCCCCCCEEeeccCcCCccc-CCC---CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683          132 SLGKLDLQKNNFE--RIPESVIQLSKLGRLCLRYWERLQSL-PKL---PCKLHELDAHHCTALESLSGLFSSFEARTQY  204 (256)
Q Consensus       132 ~L~~L~l~~n~l~--~lp~~i~~l~~L~~L~l~~~~~l~~l-p~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l  204 (256)
                      +|++|++++|.++  .+|..++.+++|++|++++|. +..+ |..   +++|++|++++|......|..+..+++++.+
T Consensus       446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  523 (570)
T 2z63_A          446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI  523 (570)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence            8888888888886  578888888888888888865 4444 544   6788888888876444444556666666644

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.17  E-value=5e-11  Score=108.13  Aligned_cols=128  Identities=19%  Similarity=0.229  Sum_probs=71.0

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCC-ccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhcc
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLK-SLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHL  118 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~-~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L  118 (256)
                      ++++++....+.+..|.++  |++|++++|.+. .+|+ .| .+++|++|++++|.++.+                    
T Consensus        35 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--------------------   94 (455)
T 3v47_A           35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL--------------------   94 (455)
T ss_dssp             EECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE--------------------
T ss_pred             EEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc--------------------
Confidence            4445555445555556655  777888777754 5544 35 778888888888777543                    


Q ss_pred             CccccccccCCCCCCcEEEccCCCCcc-cccc--ccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccccccc
Q 043683          119 NTLVLPENIGQLSSLGKLDLQKNNFER-IPES--VIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESL  191 (256)
Q Consensus       119 ~~L~lp~~~~~l~~L~~L~l~~n~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~  191 (256)
                          .|..++.+++|++|++++|+++. +|..  ++.+++|++|++++|......|..    +++|++|++++|......
T Consensus        95 ----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  170 (455)
T 3v47_A           95 ----ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC  170 (455)
T ss_dssp             ----CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred             ----ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence                24445555566666666555552 3322  555566666666554322222331    455566666555433333


Q ss_pred             ccch
Q 043683          192 SGLF  195 (256)
Q Consensus       192 p~~~  195 (256)
                      |..+
T Consensus       171 ~~~l  174 (455)
T 3v47_A          171 EEDL  174 (455)
T ss_dssp             TTTS
T ss_pred             hhhh
Confidence            4333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.17  E-value=6.8e-11  Score=110.56  Aligned_cols=128  Identities=20%  Similarity=0.182  Sum_probs=96.7

Q ss_pred             EeeCCCCeeeecChHHHHhhhhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCc
Q 043683           43 CLGMSKVKEIHLNPDTFRKMLRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNT  120 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~~lL~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~  120 (256)
                      .+|+++.....+....+ .-+++|++++|.+..+|+ .| .+++|++|++++|.++.+                      
T Consensus        35 ~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------------------   91 (562)
T 3a79_B           35 MVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL----------------------   91 (562)
T ss_dssp             EEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE----------------------
T ss_pred             EEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC----------------------
Confidence            45666655444443222 338999999999998885 56 899999999999998753                      


Q ss_pred             cccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccC--CC---CCCCcEEeccCcccccccccch
Q 043683          121 LVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLP--KL---PCKLHELDAHHCTALESLSGLF  195 (256)
Q Consensus       121 L~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp--~~---l~~L~~L~l~~~~~l~~~p~~~  195 (256)
                        .|..|+.+++|++|++++|+++.+|..  .+++|++|++++|. +..+|  ..   +++|++|++++|.. ..  ..+
T Consensus        92 --~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l-~~--~~~  163 (562)
T 3a79_B           92 --DFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKF-RQ--LDL  163 (562)
T ss_dssp             --CTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBC-CT--TTT
T ss_pred             --CHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcc-cc--Cch
Confidence              366789999999999999999999977  89999999999854 66655  33   88999999998653 32  334


Q ss_pred             hchhhh
Q 043683          196 SSFEAR  201 (256)
Q Consensus       196 ~~l~~l  201 (256)
                      ..++.+
T Consensus       164 ~~l~~L  169 (562)
T 3a79_B          164 LPVAHL  169 (562)
T ss_dssp             GGGTTS
T ss_pred             hhhhhc
Confidence            444444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.16  E-value=2.6e-11  Score=118.83  Aligned_cols=150  Identities=17%  Similarity=0.133  Sum_probs=70.5

Q ss_pred             eCCCCeeeecChHHHHhh--hhhhhccCCC-CCcc-CCcc-ccCCccEEeCcCCcchhh-HHHHHHhcccCCCCchhhc-
Q 043683           45 GMSKVKEIHLNPDTFRKM--LRYFHWHGCP-LKSL-PSNI-HLEKLVLLEMPHSNIQQL-LDSVRGILTRTPNTPLGQH-  117 (256)
Q Consensus        45 ~l~~l~~~~l~~~~f~~l--L~~L~ls~n~-l~~l-p~~~-~l~~L~~L~L~~n~l~~l-~~~L~~Ll~~lp~~~l~~~-  117 (256)
                      |++.+.+..+.+..|.++  |++|++++|. +..+ |..| .+++|++|+|++|.++.+ +..+.. +..+..+.++++ 
T Consensus        30 dLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~n~  108 (844)
T 3j0a_A           30 LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHLFELRLYFCG  108 (844)
T ss_dssp             EEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS-CSSCCCEECTTCC
T ss_pred             ECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC-CcccCEeeCcCCC
Confidence            334444444445555555  7888887774 5666 4446 778888888888777653 000000 000111111111 


Q ss_pred             cCccccccc--cCCCCCCcEEEccCCCCcccc--ccccCCCCCCEEeeccCcCCcccCCC---C--CCCcEEeccCcccc
Q 043683          118 LNTLVLPEN--IGQLSSLGKLDLQKNNFERIP--ESVIQLSKLGRLCLRYWERLQSLPKL---P--CKLHELDAHHCTAL  188 (256)
Q Consensus       118 L~~L~lp~~--~~~l~~L~~L~l~~n~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~~---l--~~L~~L~l~~~~~l  188 (256)
                      ++. .+|..  ++.+++|++|++++|.++.++  +.++++++|++|++++|..-...|..   +  ++|+.|+++.|...
T Consensus       109 l~~-~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~  187 (844)
T 3j0a_A          109 LSD-AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY  187 (844)
T ss_dssp             CSS-CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred             CCc-ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence            000 01222  455555555555555555332  34555555555555553322222222   2  45555555555444


Q ss_pred             cccccchh
Q 043683          189 ESLSGLFS  196 (256)
Q Consensus       189 ~~~p~~~~  196 (256)
                      ...|..++
T Consensus       188 ~~~~~~~~  195 (844)
T 3j0a_A          188 SRVSVDWG  195 (844)
T ss_dssp             CCCCCCCC
T ss_pred             cccccchh
Confidence            44444433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.16  E-value=3.6e-11  Score=105.35  Aligned_cols=117  Identities=16%  Similarity=0.254  Sum_probs=58.5

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |++|++++|.++.+|. + .+++|++|++++|.++.+. .+.. +..+..+.++++ ++  .++. +..+++|++|++++
T Consensus        68 L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~-l~~L~~L~l~~n~i~--~~~~-~~~l~~L~~L~l~~  141 (347)
T 4fmz_A           68 LEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQN-LTNLRELYLNEDNIS--DISP-LANLTKMYSLNLGA  141 (347)
T ss_dssp             CCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTT-CTTCSEEECTTSCCC--CCGG-GTTCTTCCEEECTT
T ss_pred             ccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcC-CCcCCEEECcCCccc--Cchh-hccCCceeEEECCC
Confidence            7888888888777776 6 7788888888888776530 0000 000000111111 00  1122 44555555555555


Q ss_pred             CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcc
Q 043683          141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCT  186 (256)
Q Consensus       141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~  186 (256)
                      |.....++.+..+++|++|++++|. +..++..  +++|++|++++|.
T Consensus       142 n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          142 NHNLSDLSPLSNMTGLNYLTVTESK-VKDVTPIANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             CTTCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECTTSC
T ss_pred             CCCcccccchhhCCCCcEEEecCCC-cCCchhhccCCCCCEEEccCCc
Confidence            5333222235555555555555533 3333332  5556666666543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.15  E-value=1.8e-10  Score=91.59  Aligned_cols=116  Identities=27%  Similarity=0.343  Sum_probs=92.5

Q ss_pred             hhhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC
Q 043683           63 LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN  142 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~  142 (256)
                      .+.+++++|.++.+|..+ .++|++|++++|.++++                        .+..++.+++|++|++++|+
T Consensus         9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~l~~n~   63 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSL------------------------PHGVFDKLTQLTKLSLSQNQ   63 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCC------------------------CTTTTTTCTTCSEEECCSSC
T ss_pred             CCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEe------------------------CHHHhcCcccccEEECCCCc
Confidence            356788899999999765 47999999999998753                        13456889999999999999


Q ss_pred             Cccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccc-hhchhhhhhcc
Q 043683          143 FERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGL-FSSFEARTQYF  205 (256)
Q Consensus       143 l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~-~~~l~~l~~l~  205 (256)
                      ++.+|+ .++.+++|++|++++| .++.+|..    +++|++|++++|. +..+|.. +..+++++.+.
T Consensus        64 l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           64 IQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEE
T ss_pred             ceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEE
Confidence            998885 4689999999999984 57777763    7899999999975 5667664 46676666543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.14  E-value=6.9e-11  Score=110.52  Aligned_cols=128  Identities=21%  Similarity=0.224  Sum_probs=100.8

Q ss_pred             EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhcc
Q 043683           43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHL  118 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L  118 (256)
                      .++++++....+.+..|.++  |++|++++|.++.+++ .| .+++|++|++++|.++.+                    
T Consensus        56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l--------------------  115 (562)
T 3a79_B           56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI--------------------  115 (562)
T ss_dssp             EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEE--------------------
T ss_pred             EEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCcc--------------------
Confidence            45667776667777788877  9999999999998854 57 899999999999998754                    


Q ss_pred             CccccccccCCCCCCcEEEccCCCCcccc--ccccCCCCCCEEeeccCcCCcccCCC-CCCC--cEEeccCccc--cccc
Q 043683          119 NTLVLPENIGQLSSLGKLDLQKNNFERIP--ESVIQLSKLGRLCLRYWERLQSLPKL-PCKL--HELDAHHCTA--LESL  191 (256)
Q Consensus       119 ~~L~lp~~~~~l~~L~~L~l~~n~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L--~~L~l~~~~~--l~~~  191 (256)
                           |..  .+++|++|++++|+++.+|  ..++++++|++|++++|. +....-. +++|  ++|++++|..  ....
T Consensus       116 -----p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~  187 (562)
T 3a79_B          116 -----SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDLLPVAHLHLSCILLDLVSYHIKGGE  187 (562)
T ss_dssp             -----CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTTTGGGTTSCEEEEEEEESSCCCCSSS
T ss_pred             -----Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCchhhhhhceeeEEEeecccccccccC
Confidence                 655  7899999999999998765  689999999999999854 4443222 5566  9999998765  4555


Q ss_pred             ccchhch
Q 043683          192 SGLFSSF  198 (256)
Q Consensus       192 p~~~~~l  198 (256)
                      |..+..+
T Consensus       188 ~~~l~~l  194 (562)
T 3a79_B          188 TESLQIP  194 (562)
T ss_dssp             CCEEEEC
T ss_pred             ccccccc
Confidence            6666553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.14  E-value=2e-11  Score=107.74  Aligned_cols=148  Identities=19%  Similarity=0.211  Sum_probs=77.2

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCC-CccCCc-c-ccCCccE-EeCcCCcchhh----HH---HHHHh-----
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPL-KSLPSN-I-HLEKLVL-LEMPHSNIQQL----LD---SVRGI-----  105 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l-~~lp~~-~-~l~~L~~-L~L~~n~l~~l----~~---~L~~L-----  105 (256)
                      ++++++++..+.+++|.++  |++|++++|.+ +.+|.+ | +++++.+ +.+.+|+++.+    +.   +|+.|     
T Consensus        35 L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n  114 (350)
T 4ay9_X           35 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT  114 (350)
T ss_dssp             EEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE
T ss_pred             EEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc
Confidence            3444555556666777777  88888888875 456654 4 6666654 44555666654    22   22222     


Q ss_pred             -cccCCCCchhhc----------------------------cCcc--------ccccccCCCCCCcEEEcc-CCCCcccc
Q 043683          106 -LTRTPNTPLGQH----------------------------LNTL--------VLPENIGQLSSLGKLDLQ-KNNFERIP  147 (256)
Q Consensus       106 -l~~lp~~~l~~~----------------------------L~~L--------~lp~~~~~l~~L~~L~l~-~n~l~~lp  147 (256)
                       +..+|.......                            ++.|        .+|..+...++|++++++ +|.++.+|
T Consensus       115 ~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~  194 (350)
T 4ay9_X          115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP  194 (350)
T ss_dssp             CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCC
T ss_pred             ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCC
Confidence             333333221111                            1111        333333344455555554 45555555


Q ss_pred             c-cccCCCCCCEEeeccCcCCcccCCC-CCCCcEEeccCcccccccc
Q 043683          148 E-SVIQLSKLGRLCLRYWERLQSLPKL-PCKLHELDAHHCTALESLS  192 (256)
Q Consensus       148 ~-~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L~~L~l~~~~~l~~~p  192 (256)
                      + .+..+++|+.|++++ +.++.+|.. +.+|+.|.+.++..++.+|
T Consensus       195 ~~~f~~l~~L~~LdLs~-N~l~~lp~~~~~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          195 NDVFHGASGPVILDISR-TRIHSLPSYGLENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             TTTTTTEECCSEEECTT-SCCCCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred             HHHhccCcccchhhcCC-CCcCccChhhhccchHhhhccCCCcCcCC
Confidence            3 345556666666665 345555554 5556666555555555555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.14  E-value=6.7e-11  Score=112.09  Aligned_cols=115  Identities=22%  Similarity=0.315  Sum_probs=55.1

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |+.|++++|.+..+|+ + .+++|+.|+|++|.++.+. .+.. +..+..+.++++ +..   ...+..+++|+.|+|++
T Consensus        67 L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~-l~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~Ls~  140 (605)
T 1m9s_A           67 VTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKD-LKKLKSLSLEHNGISD---INGLVHLPQLESLYLGN  140 (605)
T ss_dssp             CCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTT-CTTCCEEECTTSCCCC---CGGGGGCTTCSEEECCS
T ss_pred             CCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhcc-CCCCCEEEecCCCCCC---CccccCCCccCEEECCC
Confidence            7777777777766665 5 6777777777777665431 0100 111111111111 111   12244455555555555


Q ss_pred             CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCc
Q 043683          141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHC  185 (256)
Q Consensus       141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~  185 (256)
                      |.++.+ +.+..+++|+.|++++|. +..++..  +++|+.|++++|
T Consensus       141 N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          141 NKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKN  185 (605)
T ss_dssp             SCCCCC-GGGGSCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSS
T ss_pred             CccCCc-hhhcccCCCCEEECcCCc-CCCchhhccCCCCCEEECcCC
Confidence            555544 345555555555555432 3333222  455555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.14  E-value=7e-11  Score=108.16  Aligned_cols=117  Identities=23%  Similarity=0.353  Sum_probs=61.1

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhH---HHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEE
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLL---DSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLD  137 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~---~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~  137 (256)
                      |++|++++|.++.+| ++ .+++|++|++++|+++++.   .+|+.|       .++++ ++  .+| +++.+++|++|+
T Consensus       133 L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L-------~L~~n~l~--~l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          133 LEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI-------AAGNNQLE--ELP-ELQNLPFLTAIY  201 (454)
T ss_dssp             CCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEE-------ECCSSCCS--SCC-CCTTCTTCCEEE
T ss_pred             CCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCcccccEE-------ECcCCcCC--cCc-cccCCCCCCEEE
Confidence            666666666666666 35 6666777777666665421   111111       01111 11  123 355666666666


Q ss_pred             ccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccch
Q 043683          138 LQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLF  195 (256)
Q Consensus       138 l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~  195 (256)
                      +++|+++.+|...   .+|++|++++| .+..+|..  +++|++|++++|. +..+|..+
T Consensus       202 l~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~l~~N~-l~~l~~~~  256 (454)
T 1jl5_A          202 ADNNSLKKLPDLP---LSLESIVAGNN-ILEELPELQNLPFLTTIYADNNL-LKTLPDLP  256 (454)
T ss_dssp             CCSSCCSSCCCCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CSSCCSCC
T ss_pred             CCCCcCCcCCCCc---CcccEEECcCC-cCCcccccCCCCCCCEEECCCCc-CCcccccc
Confidence            6666666555432   35666666653 34455544  5666666666643 44455433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.13  E-value=5.2e-11  Score=112.82  Aligned_cols=132  Identities=16%  Similarity=0.240  Sum_probs=97.8

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |+.|++++|.+..+| .+ .+++|+.|+|++|.+..+.+ +.. +..+..+.++++ ++.   +..++.+++|++|+|++
T Consensus        45 L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~-l~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           45 IDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTN-LKNLGWLFLDENKIKD---LSSLKDLKKLKSLSLEH  118 (605)
T ss_dssp             CCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGG-CTTCCEEECCSSCCCC---CTTSTTCTTCCEEECTT
T ss_pred             CCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hcc-CCCCCEEECcCCCCCC---ChhhccCCCCCEEEecC
Confidence            899999999999998 47 99999999999999887632 222 222222222222 221   23678999999999999


Q ss_pred             CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhhhc
Q 043683          141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEARTQY  204 (256)
Q Consensus       141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l  204 (256)
                      |.++.+| .+..+++|+.|++++| .+..++..  +++|+.|++++|. +..++. +..+++|..|
T Consensus       119 N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L  180 (605)
T 1m9s_A          119 NGISDIN-GLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNL  180 (605)
T ss_dssp             SCCCCCG-GGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred             CCCCCCc-cccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEE
Confidence            9999876 6889999999999985 46666554  8899999999976 455544 6666666644

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.12  E-value=3.5e-11  Score=104.26  Aligned_cols=139  Identities=15%  Similarity=0.192  Sum_probs=93.4

Q ss_pred             eCCCCeeeecChHHHHhh--hhhhhccCCCCCc---cCC--cc-ccCCccEEeCcCCcchhhHHHHHHh---cccCCCCc
Q 043683           45 GMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKS---LPS--NI-HLEKLVLLEMPHSNIQQLLDSVRGI---LTRTPNTP  113 (256)
Q Consensus        45 ~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~---lp~--~~-~l~~L~~L~L~~n~l~~l~~~L~~L---l~~lp~~~  113 (256)
                      +++++....+.+..|.++  |++|++++|.+..   ++.  .+ .+++|++|++++|+++.+......+   +..+..+.
T Consensus       151 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~  230 (310)
T 4glp_A          151 SIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLD  230 (310)
T ss_dssp             EEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEE
T ss_pred             EeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEE
Confidence            334444444445555555  9999999998653   432  23 7889999999999987542211111   23333333


Q ss_pred             hhhc-cCccccccccCCC---CCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCccc
Q 043683          114 LGQH-LNTLVLPENIGQL---SSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTA  187 (256)
Q Consensus       114 l~~~-L~~L~lp~~~~~l---~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~  187 (256)
                      ++++ ++. ..|..++.+   ++|++|++++|+++.+|..+.  ++|+.|++++| .+..+|..  +++|+.|++++|+.
T Consensus       231 Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          231 LSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             CTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTTT
T ss_pred             CCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCCC
Confidence            3333 221 135556665   699999999999999998775  89999999984 56776654  89999999998763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.11  E-value=1.1e-10  Score=106.97  Aligned_cols=121  Identities=18%  Similarity=0.250  Sum_probs=71.9

Q ss_pred             HHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh-HHHHHHhcccCCCCchhhc-cCccccccccCCCCCC
Q 043683           59 FRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL-LDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSL  133 (256)
Q Consensus        59 f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l-~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L  133 (256)
                      |..+  |++|++++|.++.+|  + .+++|++|++++|.++++ +.++    ..+..+.++++ ++.  +|  ++.+++|
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l----~~L~~L~L~~N~l~~--l~--~~~l~~L  129 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLDVTPL----TKLTYLNCDTNKLTK--LD--VSQNPLL  129 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTC----TTCCEEECCSSCCSC--CC--CTTCTTC
T ss_pred             hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceeecCCC----CcCCEEECCCCcCCe--ec--CCCCCcC
Confidence            4444  899999999988886  7 889999999999988764 1111    11111111111 111  12  5666677


Q ss_pred             cEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC-CCCCcEEeccCcccccccc
Q 043683          134 GKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL-PCKLHELDAHHCTALESLS  192 (256)
Q Consensus       134 ~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L~~L~l~~~~~l~~~p  192 (256)
                      ++|++++|+++.+|  ++.+++|++|++++|..++.++-. +++|++|++++|. +..+|
T Consensus       130 ~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~-l~~l~  186 (457)
T 3bz5_A          130 TYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK-ITELD  186 (457)
T ss_dssp             CEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC-CCCCC
T ss_pred             CEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc-cceec
Confidence            77777777666654  556666666666665555555333 5566666666543 33343

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.11  E-value=8.1e-11  Score=111.82  Aligned_cols=71  Identities=28%  Similarity=0.316  Sum_probs=59.2

Q ss_pred             CCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCCCCCCcEEeccCcccccccccchhchhhhhhcc
Q 043683          130 LSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEARTQYF  205 (256)
Q Consensus       130 l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l~  205 (256)
                      +++|++|++++|+++.+|   ..+++|+.|++++| .+..+|..+++|++|++++|. +..+|..+.+++++..+.
T Consensus       220 ~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          220 PSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVN  290 (622)
T ss_dssp             CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEE
T ss_pred             CCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCC-CCcCCHHHhhccccCEEE
Confidence            477899999999999888   45688999999984 678888888899999999975 678999888888777553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.11  E-value=9.2e-11  Score=107.44  Aligned_cols=128  Identities=22%  Similarity=0.221  Sum_probs=91.5

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |++|++++|.++.+| .+ .+++|++|++++|.++++.  +.. +..+..+.++++ ++.  +|  ++.+++|++|++++
T Consensus        44 L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~-l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~  115 (457)
T 3bz5_A           44 LTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQ-NTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDT  115 (457)
T ss_dssp             CCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTT-CTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCS
T ss_pred             CCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--ccc-CCCCCEEECcCCCCce--ee--cCCCCcCCEEECCC
Confidence            999999999999997 67 9999999999999988651  111 111111212222 222  22  67888999999999


Q ss_pred             CCCccccccccCCCCCCEEeeccCcCCcccCCC-CCCCcEEeccCcccccccccchhchhhhhh
Q 043683          141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL-PCKLHELDAHHCTALESLSGLFSSFEARTQ  203 (256)
Q Consensus       141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~  203 (256)
                      |+++.+|  ++.+++|++|++++| .+..++-. +++|++|++++|..++.+  .++.+++++.
T Consensus       116 N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~  174 (457)
T 3bz5_A          116 NKLTKLD--VSQNPLLTYLNCARN-TLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT  174 (457)
T ss_dssp             SCCSCCC--CTTCTTCCEEECTTS-CCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred             CcCCeec--CCCCCcCCEEECCCC-ccceeccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence            9988876  788899999999884 46666644 888999999988766666  3455555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.09  E-value=1.3e-10  Score=113.98  Aligned_cols=133  Identities=19%  Similarity=0.181  Sum_probs=70.1

Q ss_pred             hhhhhccCCCCCcc-CCcc-ccCCccEEeCcCCcch-hh-HHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEE
Q 043683           63 LRYFHWHGCPLKSL-PSNI-HLEKLVLLEMPHSNIQ-QL-LDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLD  137 (256)
Q Consensus        63 L~~L~ls~n~l~~l-p~~~-~l~~L~~L~L~~n~l~-~l-~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~  137 (256)
                      +++|++++|.++.+ |..| .+++|++|++++|... .+ ...+.. +..+..+.++++ ++. ..|.+|+++++|++|+
T Consensus        26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~-L~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN-LPNLRILDLGSSKIYF-LHPDAFQGLFHLFELR  103 (844)
T ss_dssp             CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSS-CTTCCEEECTTCCCCE-ECTTSSCSCSSCCCEE
T ss_pred             cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcC-CCCCCEEECCCCcCcc-cCHhHccCCcccCEee
Confidence            99999999999887 4567 9999999999999542 21 000000 000000111111 000 1255555666666666


Q ss_pred             ccCCCCcc-cccc--ccCCCCCCEEeeccCcCCccc-CC-C---CCCCcEEeccCcccccccccchhch
Q 043683          138 LQKNNFER-IPES--VIQLSKLGRLCLRYWERLQSL-PK-L---PCKLHELDAHHCTALESLSGLFSSF  198 (256)
Q Consensus       138 l~~n~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~l-p~-~---l~~L~~L~l~~~~~l~~~p~~~~~l  198 (256)
                      +++|.++. +|..  ++++++|++|++++|. +..+ |. .   +++|++|++++|......|..+..+
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence            66665552 3432  5566666666666533 2222 21 1   5556666666554444444444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.09  E-value=9.4e-11  Score=102.66  Aligned_cols=133  Identities=18%  Similarity=0.224  Sum_probs=74.1

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |++|++++|.+..++. + .+++|++|++++|.+..+.. +.. +..+..+.++++ ++  .++. +..+++|++|++++
T Consensus       179 L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~-~~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~l~~  252 (347)
T 4fmz_A          179 LYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VAN-MTRLNSLKIGNNKIT--DLSP-LANLSQLTWLEIGT  252 (347)
T ss_dssp             CSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGG-CTTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCS
T ss_pred             CCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhc-CCcCCEEEccCCccC--CCcc-hhcCCCCCEEECCC
Confidence            8889999998888876 6 88889999998888765411 111 111111111111 11  1122 45566666666666


Q ss_pred             CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhhh
Q 043683          141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEARTQ  203 (256)
Q Consensus       141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~  203 (256)
                      |.++.++ .+..+++|++|++++| .+..+|..  +++|++|++++|......|..++.+++++.
T Consensus       253 n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          253 NQISDIN-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             SCCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             CccCCCh-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence            6666553 4556666666666653 34444433  556666666665544444445555444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.07  E-value=2.4e-10  Score=107.51  Aligned_cols=126  Identities=21%  Similarity=0.292  Sum_probs=85.5

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |++|++++|.++.+|. + .  +|++|++++|.++.+...    +..+..+.++++ ++  .+|.   .+++|++|++++
T Consensus       102 L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~~----l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~  169 (571)
T 3cvr_A          102 LEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPEL----PALLEYINADNNQLT--MLPE---LPTSLEVLSVRN  169 (571)
T ss_dssp             CCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCS--CCCC---CCTTCCEEECCS
T ss_pred             CCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCCc----CccccEEeCCCCccC--cCCC---cCCCcCEEECCC
Confidence            8888888888888887 6 4  888888888887764221    111111112222 22  2344   467888999998


Q ss_pred             CCCccccccccCCCCCCEEeeccCcCCcccCCCCCCC-------cEEeccCcccccccccchhchhhhhhcc
Q 043683          141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKL-------HELDAHHCTALESLSGLFSSFEARTQYF  205 (256)
Q Consensus       141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~L-------~~L~l~~~~~l~~~p~~~~~l~~l~~l~  205 (256)
                      |+++.+|. +.  ++|+.|++++| .++.+|....+|       +.|++++|. +..+|..+..++++..+.
T Consensus       170 N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~  236 (571)
T 3cvr_A          170 NQLTFLPE-LP--ESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTII  236 (571)
T ss_dssp             SCCSCCCC-CC--TTCCEEECCSS-CCSSCCCCC--------CCEEEECCSSC-CCCCCGGGGGSCTTEEEE
T ss_pred             CCCCCcch-hh--CCCCEEECcCC-CCCchhhHHHhhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEE
Confidence            88888887 65  88999999874 577887743366       889998864 677888887777766543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.07  E-value=1.8e-10  Score=105.46  Aligned_cols=59  Identities=29%  Similarity=0.392  Sum_probs=39.4

Q ss_pred             cccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCCCCCCcEEeccCcc
Q 043683          123 LPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCT  186 (256)
Q Consensus       123 lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~L~~L~l~~~~  186 (256)
                      +| .++.+++|++|++++|+++.+|..   +.+|+.|++++| .+..+|..+++|++|++++|.
T Consensus       230 lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N-~l~~l~~~~~~L~~L~ls~N~  288 (454)
T 1jl5_A          230 LP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDN-YLTDLPELPQSLTFLDVSENI  288 (454)
T ss_dssp             CC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC
T ss_pred             cc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCC-cccccCcccCcCCEEECcCCc
Confidence            45 366777777777777777777643   367777777763 355666666677777777754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.07  E-value=4.6e-11  Score=113.50  Aligned_cols=65  Identities=35%  Similarity=0.382  Sum_probs=41.2

Q ss_pred             CCCcEEEccCCCCccccccccC-----------------CCCCCEEeeccCcCCcccCCCCCCCcEEeccCccccccccc
Q 043683          131 SSLGKLDLQKNNFERIPESVIQ-----------------LSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSG  193 (256)
Q Consensus       131 ~~L~~L~l~~n~l~~lp~~i~~-----------------l~~L~~L~l~~~~~l~~lp~~l~~L~~L~l~~~~~l~~~p~  193 (256)
                      ++|++|++++|+++.+|..+..                 +++|+.|++++| .++.+|..+++|+.|++++| .+..+|.
T Consensus       181 ~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N-~L~~lp~  258 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGN-RLTSLPM  258 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCC
T ss_pred             CCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCC-CCCcCCc
Confidence            5666666666666665543221                 256777777763 56667755778888888876 4667776


Q ss_pred             chhc
Q 043683          194 LFSS  197 (256)
Q Consensus       194 ~~~~  197 (256)
                      .+.+
T Consensus       259 ~~~~  262 (622)
T 3g06_A          259 LPSG  262 (622)
T ss_dssp             CCTT
T ss_pred             cccc
Confidence            4333

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.07  E-value=5e-11  Score=103.50  Aligned_cols=139  Identities=17%  Similarity=0.238  Sum_probs=92.4

Q ss_pred             eCCCCeeeecChHHHHhh--hhhhhccCCCCCc---cCCc--c-ccCCccEEeCcCCcchhh---HHHHHHhcccCCCCc
Q 043683           45 GMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKS---LPSN--I-HLEKLVLLEMPHSNIQQL---LDSVRGILTRTPNTP  113 (256)
Q Consensus        45 ~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~---lp~~--~-~l~~L~~L~L~~n~l~~l---~~~L~~Ll~~lp~~~  113 (256)
                      ++++++...+.+..|.++  |++|++++|.+..   +|..  + .+++|++|++++|.++.+   ...+..-+..+..+.
T Consensus       155 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~  234 (312)
T 1wwl_A          155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD  234 (312)
T ss_dssp             EEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEE
T ss_pred             EeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEE
Confidence            334444444555556555  8999999988543   2322  2 688999999999988743   222211012222222


Q ss_pred             hhhc-cCccccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcc
Q 043683          114 LGQH-LNTLVLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCT  186 (256)
Q Consensus       114 l~~~-L~~L~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~  186 (256)
                      ++++ ++.......+..+++|++|++++|+++.+|..+.  ++|++|++++ +.++.+|..  +++|++|++++|+
T Consensus       235 Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred             CCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence            2322 2221111345668999999999999999998877  8999999998 557777875  8899999999875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.05  E-value=6.3e-13  Score=108.08  Aligned_cols=107  Identities=14%  Similarity=0.193  Sum_probs=86.6

Q ss_pred             HHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCc
Q 043683           58 TFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLG  134 (256)
Q Consensus        58 ~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~  134 (256)
                      .|..+  |++|++++|.++.+| .+ .+++|++|++++|.++.+                         |..++.+++|+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l-------------------------~~~~~~~~~L~   96 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKI-------------------------ENLDAVADTLE   96 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSC-------------------------SSHHHHHHHCS
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccc-------------------------cchhhcCCcCC
Confidence            67776  999999999998888 77 899999999999988743                         55556678899


Q ss_pred             EEEccCCCCccccccccCCCCCCEEeeccCcCCcccCC---C--CCCCcEEeccCcccccccc
Q 043683          135 KLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPK---L--PCKLHELDAHHCTALESLS  192 (256)
Q Consensus       135 ~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~---~--l~~L~~L~l~~~~~l~~~p  192 (256)
                      +|++++|+++.+| .++.+++|++|++++| .+..+|.   .  +++|++|++++|+.....|
T Consensus        97 ~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A           97 ELWISYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             EEEEEEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             EEECcCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence            9999999999888 6888999999999984 4666654   1  7889999999886544444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.03  E-value=7.6e-10  Score=97.08  Aligned_cols=95  Identities=23%  Similarity=0.267  Sum_probs=78.1

Q ss_pred             hhccCC-CCCccCCcc-ccCCccEEeCcC-CcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC
Q 043683           66 FHWHGC-PLKSLPSNI-HLEKLVLLEMPH-SNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN  142 (256)
Q Consensus        66 L~ls~n-~l~~lp~~~-~l~~L~~L~L~~-n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~  142 (256)
                      ++.+++ .+..+|. + .+++|++|+|++ |.++.+                        .|..|+.+++|++|+|++|+
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~------------------------~~~~~~~l~~L~~L~l~~N~   67 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHL------------------------ELRDLRGLGELRNLTIVKSG   67 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEE------------------------CGGGSCSCCCCSEEECCSSC
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCc------------------------ChhHhccccCCCEEECCCCc
Confidence            467777 7999999 8 899999999996 988764                        23678899999999999999


Q ss_pred             Cccccc-cccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcc
Q 043683          143 FERIPE-SVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCT  186 (256)
Q Consensus       143 l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~  186 (256)
                      ++.+|+ .|+++++|++|+|++ |.+..+|..   ..+|+.|++.+|.
T Consensus        68 l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           68 LRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             CCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             cceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcccCCceEEEeeCCC
Confidence            997764 679999999999998 557888865   2349999998865

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.01  E-value=4e-10  Score=89.85  Aligned_cols=101  Identities=17%  Similarity=0.235  Sum_probs=77.6

Q ss_pred             eeCCCCeeeecChHHHHhhhhhhhccCCCCCccCC-cc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCcc
Q 043683           44 LGMSKVKEIHLNPDTFRKMLRYFHWHGCPLKSLPS-NI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTL  121 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~lL~~L~ls~n~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L  121 (256)
                      +++++.+...+....+ .-|++|++++|.+..+++ .| .+++|++|+|++|+++.+                       
T Consensus        17 l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----------------------   72 (174)
T 2r9u_A           17 VNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-----------------------   72 (174)
T ss_dssp             EECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-----------------------
T ss_pred             EEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-----------------------
Confidence            4555444333332211 229999999999999865 46 899999999999998754                       


Q ss_pred             cccc-ccCCCCCCcEEEccCCCCcccccc-ccCCCCCCEEeeccCcCCcccC
Q 043683          122 VLPE-NIGQLSSLGKLDLQKNNFERIPES-VIQLSKLGRLCLRYWERLQSLP  171 (256)
Q Consensus       122 ~lp~-~~~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp  171 (256)
                        |. .|+.+++|++|++++|+++.+|+. +..+++|++|++++|. +...+
T Consensus        73 --~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~  121 (174)
T 2r9u_A           73 --PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCEC  121 (174)
T ss_dssp             --CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTB
T ss_pred             --ChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCC-ccccc
Confidence              44 358899999999999999999975 8999999999999854 44433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.01  E-value=4.3e-10  Score=89.21  Aligned_cols=79  Identities=19%  Similarity=0.288  Sum_probs=69.1

Q ss_pred             hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      +++|++++|.++.+++. | .+++|++|+|++|+++.+                        .+..|..+++|++|++++
T Consensus        32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l------------------------~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL------------------------PAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC------------------------CTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc------------------------ChhhccCCCCCCEEECCC
Confidence            89999999999998554 6 899999999999998764                        134468999999999999


Q ss_pred             CCCccccc-cccCCCCCCEEeeccCc
Q 043683          141 NNFERIPE-SVIQLSKLGRLCLRYWE  165 (256)
Q Consensus       141 n~l~~lp~-~i~~l~~L~~L~l~~~~  165 (256)
                      |+++.+|+ .+..+++|++|++++|.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            99999986 58999999999999854

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.00  E-value=5.8e-10  Score=101.91  Aligned_cols=130  Identities=25%  Similarity=0.319  Sum_probs=74.6

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQK  140 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~  140 (256)
                      |++|++++|.+..+++ + .+++|++|++++|.++.+.+ +.. +..+..+.++++ ++.  ++. ++.+++|++|++++
T Consensus       245 L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~-l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~L~~  318 (466)
T 1o6v_A          245 LTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAG-LTALTNLELNENQLED--ISP-ISNLKNLTYLTLYF  318 (466)
T ss_dssp             CSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTT-CTTCSEEECCSSCCSC--CGG-GGGCTTCSEEECCS
T ss_pred             CCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccC-CCccCeEEcCCCcccC--chh-hcCCCCCCEEECcC
Confidence            8888888888887766 6 78888888888888775421 111 111111111111 111  121 45666777777777


Q ss_pred             CCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhh
Q 043683          141 NNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEART  202 (256)
Q Consensus       141 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~  202 (256)
                      |+++.+++ ++.+++|+.|++++| .+..++..  +++|+.|++++|...+..|  +..++.++
T Consensus       319 n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  378 (466)
T 1o6v_A          319 NNISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRIT  378 (466)
T ss_dssp             SCCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred             CcCCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence            76665554 566677777777664 34444443  6667777777665433333  44444444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.98  E-value=4.7e-10  Score=102.54  Aligned_cols=72  Identities=19%  Similarity=0.324  Sum_probs=38.7

Q ss_pred             cCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhh
Q 043683          127 IGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEART  202 (256)
Q Consensus       127 ~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~  202 (256)
                      ++.+++|++|++++|+++.+++ ++.+++|+.|++++|. +..++..  +++|++|++++|. +..+ ..+..+++++
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~  356 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNNK-VSDV-SSLANLTNIN  356 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSSC-CCCC-GGGTTCTTCC
T ss_pred             ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCCc-cCCc-hhhccCCCCC
Confidence            4555666666666666665553 5566666666666643 3333322  5666666666653 3333 2344444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.98  E-value=5.4e-10  Score=105.10  Aligned_cols=123  Identities=20%  Similarity=0.194  Sum_probs=92.0

Q ss_pred             hhhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccCC
Q 043683           63 LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQKN  141 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~n  141 (256)
                      |++|++++|.++.+|.  .+++|++|++++|.++.+...    +..+..+.++++ ++  .+|. +.  ++|++|++++|
T Consensus       122 L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~~----l~~L~~L~Ls~N~L~--~lp~-l~--~~L~~L~Ls~N  190 (571)
T 3cvr_A          122 LKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLT--FLPE-LP--ESLEALDVSTN  190 (571)
T ss_dssp             CCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCS--CCCC-CC--TTCCEEECCSS
T ss_pred             CCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCCc----CCCcCEEECCCCCCC--Ccch-hh--CCCCEEECcCC
Confidence            8999999999999988  688999999999998764221    111111222222 22  2465 55  89999999999


Q ss_pred             CCccccccccCCCCC-------CEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhh
Q 043683          142 NFERIPESVIQLSKL-------GRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEA  200 (256)
Q Consensus       142 ~l~~lp~~i~~l~~L-------~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~  200 (256)
                      +++.+|. +..  +|       +.|++++ |.+..+|..   +++|++|++++|+..+.+|..+..+..
T Consensus       191 ~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          191 LLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             CCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            9999998 655  77       9999998 568889985   889999999999877888888877655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.94  E-value=3.8e-10  Score=98.21  Aligned_cols=148  Identities=15%  Similarity=0.167  Sum_probs=97.8

Q ss_pred             hHHHHhh----hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh--HHHHHHhcccCCCCchhhc-cCcccccccc
Q 043683           56 PDTFRKM----LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL--LDSVRGILTRTPNTPLGQH-LNTLVLPENI  127 (256)
Q Consensus        56 ~~~f~~l----L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l--~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~  127 (256)
                      +..+..+    +++|++++|.+...++.+ .+++|++|++++|.+...  ...+.. +..+..+.+.++ +.. ..|..+
T Consensus        61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~-~~~L~~L~L~~~~l~~-~~~~~l  138 (336)
T 2ast_B           61 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ-CSKLQNLSLEGLRLSD-PIVNTL  138 (336)
T ss_dssp             HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTT-BCCCSEEECTTCBCCH-HHHHHH
T ss_pred             HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhh-CCCCCEEeCcCcccCH-HHHHHH
Confidence            4455544    888999999988777777 899999999999988642  111222 222222222222 000 235667


Q ss_pred             CCCCCCcEEEccCC-CCc--cccccccCCCCCCEEeeccCcCCcc--cCCC---CC-CCcEEeccCcc-cc--cccccch
Q 043683          128 GQLSSLGKLDLQKN-NFE--RIPESVIQLSKLGRLCLRYWERLQS--LPKL---PC-KLHELDAHHCT-AL--ESLSGLF  195 (256)
Q Consensus       128 ~~l~~L~~L~l~~n-~l~--~lp~~i~~l~~L~~L~l~~~~~l~~--lp~~---l~-~L~~L~l~~~~-~l--~~~p~~~  195 (256)
                      +.+++|++|++++| .++  .+|..+..+++|++|++++|..+..  ++..   ++ +|++|++++|. .+  ..+|..+
T Consensus       139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~  218 (336)
T 2ast_B          139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV  218 (336)
T ss_dssp             TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred             hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence            78888999999887 677  4777788888999999988734543  3443   67 89999998874 23  4566666


Q ss_pred             hchhhhhhcc
Q 043683          196 SSFEARTQYF  205 (256)
Q Consensus       196 ~~l~~l~~l~  205 (256)
                      ..+++++.+.
T Consensus       219 ~~~~~L~~L~  228 (336)
T 2ast_B          219 RRCPNLVHLD  228 (336)
T ss_dssp             HHCTTCSEEE
T ss_pred             hhCCCCCEEe
Confidence            6666666543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.92  E-value=1.8e-10  Score=100.22  Aligned_cols=139  Identities=14%  Similarity=0.171  Sum_probs=90.6

Q ss_pred             hhhhhccCCCCC-ccCCcc-ccCCccEEeCcCC-cchhh--HHHHHHhcccCCCCchhhc--cCccccccccCCCC-CCc
Q 043683           63 LRYFHWHGCPLK-SLPSNI-HLEKLVLLEMPHS-NIQQL--LDSVRGILTRTPNTPLGQH--LNTLVLPENIGQLS-SLG  134 (256)
Q Consensus        63 L~~L~ls~n~l~-~lp~~~-~l~~L~~L~L~~n-~l~~l--~~~L~~Ll~~lp~~~l~~~--L~~L~lp~~~~~l~-~L~  134 (256)
                      |++|++++|.++ ..|..+ .+++|++|++++| .++..  ...+.. +..+..+.++++  ++.-.++..++.++ +|+
T Consensus       120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~  198 (336)
T 2ast_B          120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-CSRLDELNLSWCFDFTEKHVQVAVAHVSETIT  198 (336)
T ss_dssp             CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred             CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-CCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence            999999999876 456667 8999999999999 67642  111222 222222222222  11112456677788 999


Q ss_pred             EEEccCCC--C--ccccccccCCCCCCEEeeccCcCCc-ccCCC---CCCCcEEeccCccccccccc---chhchhhhhh
Q 043683          135 KLDLQKNN--F--ERIPESVIQLSKLGRLCLRYWERLQ-SLPKL---PCKLHELDAHHCTALESLSG---LFSSFEARTQ  203 (256)
Q Consensus       135 ~L~l~~n~--l--~~lp~~i~~l~~L~~L~l~~~~~l~-~lp~~---l~~L~~L~l~~~~~l~~~p~---~~~~l~~l~~  203 (256)
                      +|++++|.  +  ..+|..+..+++|++|++++|..+. ..+..   +++|++|++++|.  ...+.   .+.++++++.
T Consensus       199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~  276 (336)
T 2ast_B          199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKT  276 (336)
T ss_dssp             EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCE
T ss_pred             EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCE
Confidence            99999884  4  4677778889999999999876443 23322   7889999999886  22334   3444555544


Q ss_pred             c
Q 043683          204 Y  204 (256)
Q Consensus       204 l  204 (256)
                      +
T Consensus       277 L  277 (336)
T 2ast_B          277 L  277 (336)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.86  E-value=6.2e-10  Score=99.16  Aligned_cols=35  Identities=11%  Similarity=0.091  Sum_probs=26.7

Q ss_pred             hhhhhccCCCCCc-----cCCcc-ccCCccEEeCcCCcchh
Q 043683           63 LRYFHWHGCPLKS-----LPSNI-HLEKLVLLEMPHSNIQQ   97 (256)
Q Consensus        63 L~~L~ls~n~l~~-----lp~~~-~l~~L~~L~L~~n~l~~   97 (256)
                      |++|++++|.++.     +|..+ .+++|++|++++|.+..
T Consensus        96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  136 (386)
T 2ca6_A           96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP  136 (386)
T ss_dssp             CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred             ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence            7888888888765     66666 77888888888888764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.82  E-value=3.2e-11  Score=97.91  Aligned_cols=104  Identities=15%  Similarity=0.279  Sum_probs=83.3

Q ss_pred             CCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCCCcccccccc
Q 043683           73 LKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFERIPESVI  151 (256)
Q Consensus        73 l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~  151 (256)
                      ++.+|..+ .+++|++|++++|.++.+                         | .++.+++|++|++++|.++.+|..+.
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~l-------------------------~-~~~~l~~L~~L~l~~n~l~~l~~~~~   90 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEKI-------------------------S-SLSGMENLRILSLGRNLIKKIENLDA   90 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESCC-------------------------C-CHHHHTTCCEEEEEEEEECSCSSHHH
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCccc-------------------------c-ccccCCCCCEEECCCCCcccccchhh
Confidence            44455578 899999999999998753                         5 66788999999999999999998888


Q ss_pred             CCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCccccccccc--chhchhhhhhc
Q 043683          152 QLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSG--LFSSFEARTQY  204 (256)
Q Consensus       152 ~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~--~~~~l~~l~~l  204 (256)
                      .+++|++|++++| .+..+|..  +++|++|++++|. +..+|.  .+..+++++.+
T Consensus        91 ~~~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L  145 (198)
T 1ds9_A           91 VADTLEELWISYN-QIASLSGIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             HHHHCSEEEEEEE-ECCCHHHHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred             cCCcCCEEECcCC-cCCcCCccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEE
Confidence            8999999999985 57777754  7899999999875 555554  55566555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.75  E-value=6.8e-09  Score=91.40  Aligned_cols=118  Identities=22%  Similarity=0.244  Sum_probs=72.5

Q ss_pred             hhhhhccC-CCCCccCCc-c-cc-CCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc--cCccccc-cccCCCCCCcE
Q 043683           63 LRYFHWHG-CPLKSLPSN-I-HL-EKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH--LNTLVLP-ENIGQLSSLGK  135 (256)
Q Consensus        63 L~~L~ls~-n~l~~lp~~-~-~l-~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~--L~~L~lp-~~~~~l~~L~~  135 (256)
                      +..|++.+ +.+..+|.. | .+ ..+++|++++|+++.+....... ..+..+.+.++  ++  .+| ..|+.+++|++
T Consensus       130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~--~i~~~~f~~l~~L~~  206 (350)
T 4ay9_X          130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLE--ELPNDVFHGASGPVI  206 (350)
T ss_dssp             CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCC--CCCTTTTTTEECCSE
T ss_pred             hhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccc-cchhHHhhccCCccc--CCCHHHhccCcccch
Confidence            44555544 346666654 3 33 35666777777665541111000 00000000000  00  234 35689999999


Q ss_pred             EEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCc
Q 043683          136 LDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHC  185 (256)
Q Consensus       136 L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~  185 (256)
                      |++++|+++.+|..  .+.+|+.|.+.+++.++.+|..  +++|+.+++.+.
T Consensus       207 LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          207 LDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP  256 (350)
T ss_dssp             EECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred             hhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence            99999999999964  4677788888778889999986  899999998753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.69  E-value=1.6e-08  Score=88.54  Aligned_cols=79  Identities=22%  Similarity=0.208  Sum_probs=67.5

Q ss_pred             hhhhhccC-CCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEcc
Q 043683           63 LRYFHWHG-CPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ  139 (256)
Q Consensus        63 L~~L~ls~-n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~  139 (256)
                      |++|+|++ |.++.+|+. | .+++|++|+|++|+|+++                        .|..|+.+++|++|+|+
T Consensus        33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~------------------------~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV------------------------APDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE------------------------CTTGGGSCSCCCEEECC
T ss_pred             eeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee------------------------CHHHhcCCcCCCEEeCC
Confidence            99999996 999999865 6 899999999999999864                        35678999999999999


Q ss_pred             CCCCccccccccCCCCCCEEeeccCc
Q 043683          140 KNNFERIPESVIQLSKLGRLCLRYWE  165 (256)
Q Consensus       140 ~n~l~~lp~~i~~l~~L~~L~l~~~~  165 (256)
                      +|+|+.+|+.+....+|+.|++++|.
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             CCccceeCHHHcccCCceEEEeeCCC
Confidence            99999999765444449999999854

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.58  E-value=4.2e-08  Score=86.64  Aligned_cols=55  Identities=16%  Similarity=0.042  Sum_probs=28.7

Q ss_pred             CCCcEEEccCCCCcc-----ccccccCC-CCCCEEeeccCcCCcccCC--------CCCCCcEEeccCcc
Q 043683          131 SSLGKLDLQKNNFER-----IPESVIQL-SKLGRLCLRYWERLQSLPK--------LPCKLHELDAHHCT  186 (256)
Q Consensus       131 ~~L~~L~l~~n~l~~-----lp~~i~~l-~~L~~L~l~~~~~l~~lp~--------~l~~L~~L~l~~~~  186 (256)
                      ++|++|++++|.++.     ++..+..+ ++|++|++++| .++..+.        .+++|++|++++|.
T Consensus       196 ~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            356666666666554     44444442 36666666653 2333322        14556666666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.58  E-value=4.5e-08  Score=87.01  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=25.3

Q ss_pred             hhhhhccCCCCC--ccC---Ccc-ccCCccEEeCcCCcch
Q 043683           63 LRYFHWHGCPLK--SLP---SNI-HLEKLVLLEMPHSNIQ   96 (256)
Q Consensus        63 L~~L~ls~n~l~--~lp---~~~-~l~~L~~L~L~~n~l~   96 (256)
                      |++|++++|.++  .+|   ..+ .+++|++|++++|.++
T Consensus       161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  200 (386)
T 2ca6_A          161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR  200 (386)
T ss_dssp             CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred             CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            788888888875  344   345 6778888888888876

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.57  E-value=8.4e-09  Score=91.17  Aligned_cols=55  Identities=13%  Similarity=0.079  Sum_probs=34.5

Q ss_pred             EeeCCCCeeeecChHHHHhh-------hhhhhccCCCCCccCCc-c-----c-cCCccEEeCcCCcchh
Q 043683           43 CLGMSKVKEIHLNPDTFRKM-------LRYFHWHGCPLKSLPSN-I-----H-LEKLVLLEMPHSNIQQ   97 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~~l-------L~~L~ls~n~l~~lp~~-~-----~-l~~L~~L~L~~n~l~~   97 (256)
                      .++++++.........+...       |++|++++|.++..+.. +     . .++|++|++++|.++.
T Consensus        84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A           84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence            34555555444444444332       78888888887776643 2     1 3588888888888773

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.46  E-value=4.5e-08  Score=88.58  Aligned_cols=123  Identities=20%  Similarity=0.278  Sum_probs=70.8

Q ss_pred             hhhhhccCCCCC-----ccCCcc-ccCCccEEeCcCCcchhh-HHHHHHhcc----cCCCCchhhc-cCcc---cccccc
Q 043683           63 LRYFHWHGCPLK-----SLPSNI-HLEKLVLLEMPHSNIQQL-LDSVRGILT----RTPNTPLGQH-LNTL---VLPENI  127 (256)
Q Consensus        63 L~~L~ls~n~l~-----~lp~~~-~l~~L~~L~L~~n~l~~l-~~~L~~Ll~----~lp~~~l~~~-L~~L---~lp~~~  127 (256)
                      |++|++++|.++     .++..+ .+++|++|++++|.+... ...+...+.    .+..+.++++ ++..   .+|..+
T Consensus        30 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l  109 (461)
T 1z7x_W           30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL  109 (461)
T ss_dssp             CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT
T ss_pred             ccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHH
Confidence            778888887776     345555 677888888888877653 222211011    1222222222 1111   236667


Q ss_pred             CCCCCCcEEEccCCCCccc-cccc-----cCCCCCCEEeeccCcCCcc-----cCCC---CCCCcEEeccCcc
Q 043683          128 GQLSSLGKLDLQKNNFERI-PESV-----IQLSKLGRLCLRYWERLQS-----LPKL---PCKLHELDAHHCT  186 (256)
Q Consensus       128 ~~l~~L~~L~l~~n~l~~l-p~~i-----~~l~~L~~L~l~~~~~l~~-----lp~~---l~~L~~L~l~~~~  186 (256)
                      ..+++|++|++++|.++.. +..+     ...++|++|++++|. +..     ++..   +++|++|++++|.
T Consensus       110 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND  181 (461)
T ss_dssp             TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence            7788888888888877632 2222     224578888888754 332     2222   5778888888766

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.45  E-value=2.7e-08  Score=90.05  Aligned_cols=72  Identities=17%  Similarity=0.125  Sum_probs=38.2

Q ss_pred             CCCcEEEccCCCCcc-----ccccccCCCCCCEEeeccCcCCcccC-C--------CCCCCcEEeccCccccc----ccc
Q 043683          131 SSLGKLDLQKNNFER-----IPESVIQLSKLGRLCLRYWERLQSLP-K--------LPCKLHELDAHHCTALE----SLS  192 (256)
Q Consensus       131 ~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~lp-~--------~l~~L~~L~l~~~~~l~----~~p  192 (256)
                      ++|++|++++|.++.     ++..+..+++|++|++++|. ++... .        ..++|++|++++|....    .+|
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  391 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  391 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence            466666666666653     34455566666666666642 32211 0        02366666666654322    455


Q ss_pred             cchhchhhhhh
Q 043683          193 GLFSSFEARTQ  203 (256)
Q Consensus       193 ~~~~~l~~l~~  203 (256)
                      ..+..+++++.
T Consensus       392 ~~l~~~~~L~~  402 (461)
T 1z7x_W          392 ATLLANHSLRE  402 (461)
T ss_dssp             HHHHHCCCCCE
T ss_pred             HHHHhCCCccE
Confidence            55555444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.38  E-value=3.1e-07  Score=79.92  Aligned_cols=147  Identities=16%  Similarity=0.212  Sum_probs=94.7

Q ss_pred             ecChHHHHh--------h--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh----HHHHHHh-----------
Q 043683           53 HLNPDTFRK--------M--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL----LDSVRGI-----------  105 (256)
Q Consensus        53 ~l~~~~f~~--------l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l----~~~L~~L-----------  105 (256)
                      .+...+|.+        +  |+.+++.+ .++.+++. | ++++|+.+++++|.+..+    |.+...+           
T Consensus        83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~  161 (329)
T 3sb4_A           83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY  161 (329)
T ss_dssp             EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred             ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh
Confidence            567788888        6  99999998 88999877 5 899999999999987544    2111111           


Q ss_pred             --cccCCCCchhhc--cC--------------------------cccccccc---------CCCCCCcEEEccCCCCccc
Q 043683          106 --LTRTPNTPLGQH--LN--------------------------TLVLPENI---------GQLSSLGKLDLQKNNFERI  146 (256)
Q Consensus       106 --l~~lp~~~l~~~--L~--------------------------~L~lp~~~---------~~l~~L~~L~l~~n~l~~l  146 (256)
                        ...+.+..+.+|  |+                          .+.+...+         ..+++|++++++.|+++.|
T Consensus       162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I  241 (329)
T 3sb4_A          162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTI  241 (329)
T ss_dssp             HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEE
T ss_pred             hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCccee
Confidence              011111111111  11                          00000000         1267899999998889988


Q ss_pred             cc-cccCCCCCCEEeeccCcCCcccCCC----CCCCc-EEeccCcccccccc-cchhchhhhhhc
Q 043683          147 PE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLH-ELDAHHCTALESLS-GLFSSFEARTQY  204 (256)
Q Consensus       147 p~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~-~L~l~~~~~l~~~p-~~~~~l~~l~~l  204 (256)
                      |+ .|.++.+|+.+++.++  +..++..    +.+|+ .+++..  .+..++ ..|..+.+|+.+
T Consensus       242 ~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          242 PDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEE
T ss_pred             cHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEE
Confidence            85 6888999999999873  7788775    67788 888876  455554 466666665544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.28  E-value=1.1e-06  Score=76.49  Aligned_cols=76  Identities=18%  Similarity=0.110  Sum_probs=60.1

Q ss_pred             cccCCCCCCcEEEccCCCCccccc-cccCCCCCC-EEeeccCcCCcccCCC----CCCCcEEeccCccccccccc-chhc
Q 043683          125 ENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLG-RLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSG-LFSS  197 (256)
Q Consensus       125 ~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~-~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~-~~~~  197 (256)
                      ..|.++++|+.+++..| ++.|++ +|.++.+|+ .+++.+  .+..++..    +++|+.+++..+ .+..++. .|.+
T Consensus       244 ~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~  319 (329)
T 3sb4_A          244 FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGN  319 (329)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCT
T ss_pred             hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcC
Confidence            35788999999999987 888884 789999999 999986  57788765    789999999764 4666655 6666


Q ss_pred             hhhhhhc
Q 043683          198 FEARTQY  204 (256)
Q Consensus       198 l~~l~~l  204 (256)
                      +.+|+.+
T Consensus       320 ~~~L~~l  326 (329)
T 3sb4_A          320 GVPSKLI  326 (329)
T ss_dssp             TCCCCEE
T ss_pred             Ccchhhh
Confidence            6666544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.15  E-value=3.7e-07  Score=81.33  Aligned_cols=123  Identities=15%  Similarity=0.186  Sum_probs=68.2

Q ss_pred             hhhhhccCCCCCccC-Ccc--ccCCccEEeCcCCcchhh-HHHHHHhc----ccCCCCchhhc-cCcc---ccccccCCC
Q 043683           63 LRYFHWHGCPLKSLP-SNI--HLEKLVLLEMPHSNIQQL-LDSVRGIL----TRTPNTPLGQH-LNTL---VLPENIGQL  130 (256)
Q Consensus        63 L~~L~ls~n~l~~lp-~~~--~l~~L~~L~L~~n~l~~l-~~~L~~Ll----~~lp~~~l~~~-L~~L---~lp~~~~~l  130 (256)
                      |++|++++|.++... ..+  .+++|++|+|++|.++.. ...+...+    ..+..+.+++| ++..   .++..+...
T Consensus       103 L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~  182 (372)
T 3un9_A          103 LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN  182 (372)
T ss_dssp             EEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTC
T ss_pred             ceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcC
Confidence            666777777665321 112  456677777777776543 11111111    11222222222 1110   234445667


Q ss_pred             CCCcEEEccCCCCcc-----ccccccCCCCCCEEeeccCcCCccc-----CCC---CCCCcEEeccCcc
Q 043683          131 SSLGKLDLQKNNFER-----IPESVIQLSKLGRLCLRYWERLQSL-----PKL---PCKLHELDAHHCT  186 (256)
Q Consensus       131 ~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~l-----p~~---l~~L~~L~l~~~~  186 (256)
                      ++|++|+|++|.++.     ++..+...++|+.|++++|. ++..     +..   .++|++|++++|.
T Consensus       183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            788888888888763     34566777788888888754 4432     111   4778888888875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.15  E-value=1.2e-06  Score=81.72  Aligned_cols=60  Identities=22%  Similarity=0.087  Sum_probs=26.2

Q ss_pred             ccccCCCCCCcEEEccCCCCc--cccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEecc
Q 043683          124 PENIGQLSSLGKLDLQKNNFE--RIPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAH  183 (256)
Q Consensus       124 p~~~~~l~~L~~L~l~~n~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~  183 (256)
                      |..+..+++|++|++++|.++  .++..+..+++|+.|+++++..-..++..   +++|++|+++
T Consensus       286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence            333444455555555544443  12223345555555555422111111111   4556666666

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.86  E-value=1.5e-05  Score=67.77  Aligned_cols=63  Identities=25%  Similarity=0.240  Sum_probs=34.1

Q ss_pred             CCCCCcEEEccCCCCcccc---ccccCCCCCCEEeeccCcCCcccCCC--CC--CCcEEeccCcccccccc
Q 043683          129 QLSSLGKLDLQKNNFERIP---ESVIQLSKLGRLCLRYWERLQSLPKL--PC--KLHELDAHHCTALESLS  192 (256)
Q Consensus       129 ~l~~L~~L~l~~n~l~~lp---~~i~~l~~L~~L~l~~~~~l~~lp~~--l~--~L~~L~l~~~~~l~~~p  192 (256)
                      ++++|++|+|++|+++.++   ..+..+++|+.|+|++ |.+..+...  +.  +|+.|++++|+....+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCcCccccC
Confidence            3455666666666665433   3445666666666665 334444322  22  56666666665444444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.82  E-value=7.3e-06  Score=76.34  Aligned_cols=101  Identities=15%  Similarity=0.117  Sum_probs=49.4

Q ss_pred             hhhhhccCCC-CC--ccCCcc-ccCCccEEeCcCCcchhh-HHHHHHh---cccCCCCchhhc-cCcc---ccccccCCC
Q 043683           63 LRYFHWHGCP-LK--SLPSNI-HLEKLVLLEMPHSNIQQL-LDSVRGI---LTRTPNTPLGQH-LNTL---VLPENIGQL  130 (256)
Q Consensus        63 L~~L~ls~n~-l~--~lp~~~-~l~~L~~L~L~~n~l~~l-~~~L~~L---l~~lp~~~l~~~-L~~L---~lp~~~~~l  130 (256)
                      |++|++++|. +.  .++..+ .+++|++|++++|.+... ...+..+   +..+..+.+..+ ++..   .++..+..+
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            7777777665 22  122223 567777777777765322 0001111   111111111111 0000   123334456


Q ss_pred             CCCcEEEccCCCCccccccccCCCCCCEEeecc
Q 043683          131 SSLGKLDLQKNNFERIPESVIQLSKLGRLCLRY  163 (256)
Q Consensus       131 ~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~  163 (256)
                      ++|++|++++|.+..+|..+..+++|++|+++.
T Consensus       220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred             CCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence            677777777766666666666666666666653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.76  E-value=1.1e-05  Score=71.69  Aligned_cols=102  Identities=15%  Similarity=0.174  Sum_probs=67.0

Q ss_pred             hhhhhccCCCCCccCCc-----c--ccCCccEEeCcCCcchhh-HHH----HHHhcccCCCCchhhc-cCcc---ccccc
Q 043683           63 LRYFHWHGCPLKSLPSN-----I--HLEKLVLLEMPHSNIQQL-LDS----VRGILTRTPNTPLGQH-LNTL---VLPEN  126 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~-----~--~l~~L~~L~L~~n~l~~l-~~~----L~~Ll~~lp~~~l~~~-L~~L---~lp~~  126 (256)
                      |++|++++|.++.....     +  ..++|++|+|++|.++.. ...    +.. ...+..+.++++ +...   .++..
T Consensus       128 L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             EEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             ccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            88899999988654321     1  247899999999998753 122    222 223333333333 1111   23555


Q ss_pred             cCCCCCCcEEEccCCCCcc-----ccccccCCCCCCEEeeccCc
Q 043683          127 IGQLSSLGKLDLQKNNFER-----IPESVIQLSKLGRLCLRYWE  165 (256)
Q Consensus       127 ~~~l~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~~  165 (256)
                      +...++|++|++++|.++.     ++..+...++|++|++++|.
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            6777899999999999974     44566678999999999864

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.75  E-value=2.5e-06  Score=79.41  Aligned_cols=31  Identities=10%  Similarity=0.087  Sum_probs=15.0

Q ss_pred             hhhhhccCCCCCcc-CCcc--ccCCccEEeCcCC
Q 043683           63 LRYFHWHGCPLKSL-PSNI--HLEKLVLLEMPHS   93 (256)
Q Consensus        63 L~~L~ls~n~l~~l-p~~~--~l~~L~~L~L~~n   93 (256)
                      |++|++++|.++.. +..+  .+++|++|++++|
T Consensus       107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B          107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            55555555554321 1222  3455556655555

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.73  E-value=3.2e-05  Score=69.42  Aligned_cols=39  Identities=18%  Similarity=0.246  Sum_probs=22.7

Q ss_pred             cChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcC
Q 043683           54 LNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPH   92 (256)
Q Consensus        54 l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~   92 (256)
                      +...+|.++  |+.+++++|.+..+|... ...+|+.+.+..
T Consensus       171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~  212 (401)
T 4fdw_A          171 LKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV  212 (401)
T ss_dssp             ECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred             ehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence            444455554  666666666666666554 445666666653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.54  E-value=3.4e-05  Score=61.61  Aligned_cols=102  Identities=11%  Similarity=0.110  Sum_probs=66.8

Q ss_pred             hhhhhccCC-CCCc-----cCCcc-ccCCccEEeCcCCcchhh-HHHHHHhcccCCCCchhhccCccccccccCCCCCCc
Q 043683           63 LRYFHWHGC-PLKS-----LPSNI-HLEKLVLLEMPHSNIQQL-LDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLG  134 (256)
Q Consensus        63 L~~L~ls~n-~l~~-----lp~~~-~l~~L~~L~L~~n~l~~l-~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~  134 (256)
                      |++|++++| .++.     +...+ ..++|++|+|++|.+... ...+                     ...+...++|+
T Consensus        38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l---------------------~~~L~~n~~L~   96 (185)
T 1io0_A           38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL---------------------AEMLKVNNTLK   96 (185)
T ss_dssp             CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH---------------------HHHHHHCSSCC
T ss_pred             CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH---------------------HHHHHhCCCcC
Confidence            777888877 6654     33333 467889999999988642 1111                     12223446788


Q ss_pred             EEEccCCCCcc-----ccccccCCCCCCEEee--ccCcCCcc-----cCCC---CCCCcEEeccCcc
Q 043683          135 KLDLQKNNFER-----IPESVIQLSKLGRLCL--RYWERLQS-----LPKL---PCKLHELDAHHCT  186 (256)
Q Consensus       135 ~L~l~~n~l~~-----lp~~i~~l~~L~~L~l--~~~~~l~~-----lp~~---l~~L~~L~l~~~~  186 (256)
                      +|+|++|.+..     +...+...++|++|++  ++| .++.     +...   .++|++|++++|.
T Consensus        97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           97 SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            99999988874     4567777888999999  553 3433     1111   4678999988764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.46  E-value=9.3e-05  Score=62.80  Aligned_cols=58  Identities=21%  Similarity=0.194  Sum_probs=37.1

Q ss_pred             cccccCCCCCCcEEEccCCCCccccccccCCC--CCCEEeeccCcCCcccCCC----------CCCCcEEe
Q 043683          123 LPENIGQLSSLGKLDLQKNNFERIPESVIQLS--KLGRLCLRYWERLQSLPKL----------PCKLHELD  181 (256)
Q Consensus       123 lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~--~L~~L~l~~~~~l~~lp~~----------l~~L~~L~  181 (256)
                      +|..++.+++|+.|+|++|+++.+. .+..+.  +|++|++++|+..+.+|..          +++|+.||
T Consensus       188 l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          188 MSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             chhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            4555667777888888877777663 344444  7777777776654445521          66677665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.46  E-value=0.00013  Score=65.50  Aligned_cols=46  Identities=13%  Similarity=0.201  Sum_probs=33.7

Q ss_pred             eecChHHHHhh-hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh
Q 043683           52 IHLNPDTFRKM-LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL   98 (256)
Q Consensus        52 ~~l~~~~f~~l-L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l   98 (256)
                      ..+...+|.+. |+.+.+.+ .+..++.. | ++.+|+.+++++|.++.+
T Consensus       147 ~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I  195 (401)
T 4fdw_A          147 KSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKL  195 (401)
T ss_dssp             CEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEE
T ss_pred             cEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEe
Confidence            34555666665 77777764 67777765 5 889999999999887765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.35  E-value=0.0001  Score=58.57  Aligned_cols=92  Identities=17%  Similarity=0.158  Sum_probs=58.2

Q ss_pred             ccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC-CCcccc-cccc
Q 043683           75 SLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN-NFERIP-ESVI  151 (256)
Q Consensus        75 ~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n-~l~~lp-~~i~  151 (256)
                      .+|... .-.+|++||++++.++..  ++                      ..+..+++|+.|+|+++ .++.-- ..+.
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~--GL----------------------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~  107 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSI--GF----------------------DHMEGLQYVEKIRLCKCHYIEDGCLERLS  107 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGG--GG----------------------GGGTTCSCCCEEEEESCTTCCHHHHHHHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHH--HH----------------------HHhcCCCCCCEEEeCCCCccCHHHHHHHH
Confidence            455544 445788888888877542  11                      12367788888888844 566211 2344


Q ss_pred             CC----CCCCEEeeccCcCCcc--cCCC--CCCCcEEeccCcccccc
Q 043683          152 QL----SKLGRLCLRYWERLQS--LPKL--PCKLHELDAHHCTALES  190 (256)
Q Consensus       152 ~l----~~L~~L~l~~~~~l~~--lp~~--l~~L~~L~l~~~~~l~~  190 (256)
                      .+    ++|++|++++|..++.  +...  +++|++|++++|+.+..
T Consensus       108 ~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          108 QLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             hcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            43    4688899988876543  1111  67888999988876553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.29  E-value=0.00017  Score=57.46  Aligned_cols=83  Identities=17%  Similarity=0.188  Sum_probs=61.9

Q ss_pred             hhhhhccCCCCCc-----cCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEE
Q 043683           63 LRYFHWHGCPLKS-----LPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKL  136 (256)
Q Consensus        63 L~~L~ls~n~l~~-----lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L  136 (256)
                      |++|++++|.++.     +...+ ..++|++|+|++|.+...  +...                  +...+...++|++|
T Consensus        67 L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~--g~~~------------------l~~~L~~n~~L~~L  126 (185)
T 1io0_A           67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS--GILA------------------LVEALQSNTSLIEL  126 (185)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH--HHHH------------------HHHGGGGCSSCCEE
T ss_pred             cCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH--HHHH------------------HHHHHHhCCCceEE
Confidence            9999999999875     33344 568999999999999753  1111                  13344566789999


Q ss_pred             Ec--cCCCCcc-----ccccccCCCCCCEEeeccCc
Q 043683          137 DL--QKNNFER-----IPESVIQLSKLGRLCLRYWE  165 (256)
Q Consensus       137 ~l--~~n~l~~-----lp~~i~~l~~L~~L~l~~~~  165 (256)
                      ++  ++|.+..     +.+.+...++|++|++++|.
T Consensus       127 ~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          127 RIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             ECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             EecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            99  8899873     45566777999999999854

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.25  E-value=2.2e-05  Score=73.00  Aligned_cols=62  Identities=26%  Similarity=0.236  Sum_probs=40.1

Q ss_pred             cccccCCCCCCcEEEccCCCCcc--ccccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccC
Q 043683          123 LPENIGQLSSLGKLDLQKNNFER--IPESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHH  184 (256)
Q Consensus       123 lp~~~~~l~~L~~L~l~~n~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~  184 (256)
                      +|..+..+++|++|++++|.++.  ++..+..+++|+.|++++|..-..++..   +++|++|++.+
T Consensus       281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~  347 (594)
T 2p1m_B          281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP  347 (594)
T ss_dssp             GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEec
Confidence            34444467888999998877762  3344668888999998876211122221   67888888844

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.88  E-value=0.00036  Score=55.41  Aligned_cols=83  Identities=12%  Similarity=0.155  Sum_probs=58.7

Q ss_pred             hhhhhccCCCCCccC-Ccc-ccCCccEEeCcCCc-chhhHHHHHHhcccCCCCchhhccCccccccccCCC----CCCcE
Q 043683           63 LRYFHWHGCPLKSLP-SNI-HLEKLVLLEMPHSN-IQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQL----SSLGK  135 (256)
Q Consensus        63 L~~L~ls~n~l~~lp-~~~-~l~~L~~L~L~~n~-l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l----~~L~~  135 (256)
                      |+.||++++.++..- ..+ .+++|++|+|++|. ++.-  ++..                      ++.+    ++|++
T Consensus        63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~--gL~~----------------------L~~~~~~~~~L~~  118 (176)
T 3e4g_A           63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG--CLER----------------------LSQLENLQKSMLE  118 (176)
T ss_dssp             EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH--HHHH----------------------HHTCHHHHHHCCE
T ss_pred             EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH--HHHH----------------------HHhcccccCCCCE
Confidence            888999998876532 224 78999999999994 6542  1111                      1222    36999


Q ss_pred             EEcc-CCCCcccc-ccccCCCCCCEEeeccCcCCcc
Q 043683          136 LDLQ-KNNFERIP-ESVIQLSKLGRLCLRYWERLQS  169 (256)
Q Consensus       136 L~l~-~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~  169 (256)
                      |+++ |.+++.-- ..+..+++|+.|++++|..++.
T Consensus       119 L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          119 MEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             EEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             EEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            9999 55687321 3567899999999999987654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.74  E-value=0.00081  Score=59.45  Aligned_cols=58  Identities=17%  Similarity=0.136  Sum_probs=30.9

Q ss_pred             CCCCCcEEEccC--CC------Cccccccc--cCCCCCCEEeeccCcCCcc----cC--CCCCCCcEEeccCcc
Q 043683          129 QLSSLGKLDLQK--NN------FERIPESV--IQLSKLGRLCLRYWERLQS----LP--KLPCKLHELDAHHCT  186 (256)
Q Consensus       129 ~l~~L~~L~l~~--n~------l~~lp~~i--~~l~~L~~L~l~~~~~l~~----lp--~~l~~L~~L~l~~~~  186 (256)
                      .+++|+.|+|+.  |.      +..+...+  +.+++|+.|++.+|.....    +-  ..+++|++|+++.|.
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            567777777752  11      22222222  2467788888876542211    11  115678888887654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.10  E-value=0.0056  Score=45.84  Aligned_cols=55  Identities=24%  Similarity=0.316  Sum_probs=37.7

Q ss_pred             hhhccCCCCC--ccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC
Q 043683           65 YFHWHGCPLK--SLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN  142 (256)
Q Consensus        65 ~L~ls~n~l~--~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~  142 (256)
                      +++.+++.++  .+|..+ ..+|++|+|++|+|+.+           |             +..|..+++|++|+|++|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l-----------~-------------~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTAL-----------P-------------PGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSC-----------C-------------TTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCcc-----------C-------------hhhhhhccccCEEEecCCC
Confidence            3466777777  788765 34688888888887653           1             2335667788888888876


Q ss_pred             Cc
Q 043683          143 FE  144 (256)
Q Consensus       143 l~  144 (256)
                      +.
T Consensus        67 ~~   68 (130)
T 3rfe_A           67 WR   68 (130)
T ss_dssp             CB
T ss_pred             ee
Confidence            54

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.53  E-value=0.02  Score=42.72  Aligned_cols=35  Identities=23%  Similarity=0.172  Sum_probs=25.2

Q ss_pred             CCCcEEEccCCCCccccc-cccCCCCCCEEeeccCc
Q 043683          131 SSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWE  165 (256)
Q Consensus       131 ~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~  165 (256)
                      .+|++|+|++|+|+.+|. .+..+.+|+.|+|++|+
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            357788888888887774 45677777777777643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=94.86  E-value=0.03  Score=49.24  Aligned_cols=59  Identities=19%  Similarity=0.216  Sum_probs=39.2

Q ss_pred             CCCCcEEEccCCCCcc-cccccc--CCCCCCEEeeccC--cC-----Ccc---c-CCC-CCCCcEEeccCcccc
Q 043683          130 LSSLGKLDLQKNNFER-IPESVI--QLSKLGRLCLRYW--ER-----LQS---L-PKL-PCKLHELDAHHCTAL  188 (256)
Q Consensus       130 l~~L~~L~l~~n~l~~-lp~~i~--~l~~L~~L~l~~~--~~-----l~~---l-p~~-l~~L~~L~l~~~~~l  188 (256)
                      +++|+.|++..+.+.. .-..+.  .+++|+.|+|+.+  +.     +..   + ... +++|++|++.+|...
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~  265 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ  265 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc
Confidence            7899999999887752 222343  7899999998531  11     111   1 111 689999999987644

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=92.80  E-value=0.081  Score=46.54  Aligned_cols=54  Identities=20%  Similarity=0.184  Sum_probs=28.4

Q ss_pred             cCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEecc
Q 043683          127 IGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAH  183 (256)
Q Consensus       127 ~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~  183 (256)
                      +..+.+|+.+.+..+ ++.++ .++.++.+|+.+++..  .+..++..    +.+|+.+++.
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp  351 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP  351 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence            445556666655432 55554 3455666666666642  24455443    4556665554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=92.79  E-value=0.18  Score=44.23  Aligned_cols=111  Identities=14%  Similarity=0.231  Sum_probs=64.2

Q ss_pred             eeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh----HHHHHHh--------cccCCCCc
Q 043683           50 KEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL----LDSVRGI--------LTRTPNTP  113 (256)
Q Consensus        50 ~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l----~~~L~~L--------l~~lp~~~  113 (256)
                      .+..+...+|.+.  |+.+.+.. .++.++.. | ++++|+.+++..+ ++.+    |.+...|        +..+..-.
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~a  135 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEA  135 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeeccee
Confidence            4667888899887  88888864 48888766 5 7899999998765 3322    3222222        11222211


Q ss_pred             hhhc-cCcc-------cc-ccccCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeecc
Q 043683          114 LGQH-LNTL-------VL-PENIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRY  163 (256)
Q Consensus       114 l~~~-L~~L-------~l-p~~~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~  163 (256)
                      +.++ +...       .+ ..+|.++.+|+.+.+..+ +..++ ..+.++.+|+.+.+..
T Consensus       136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred             eecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC
Confidence            2222 1111       11 234566777777777643 34455 3566677777766653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.44  E-value=0.33  Score=42.55  Aligned_cols=55  Identities=15%  Similarity=0.285  Sum_probs=27.1

Q ss_pred             cCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccC
Q 043683          127 IGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHH  184 (256)
Q Consensus       127 ~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~  184 (256)
                      |.++.+|+.+++..+ ++.|. .+|.++.+|+.+.+..  .+..+...    ..+|+.+++.+
T Consensus       307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred             ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence            445555555555432 44444 2455555666555542  14444432    44555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=91.60  E-value=0.2  Score=43.57  Aligned_cols=54  Identities=17%  Similarity=0.204  Sum_probs=30.8

Q ss_pred             cCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEec
Q 043683          127 IGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDA  182 (256)
Q Consensus       127 ~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l  182 (256)
                      |.++.+|+.+.+..+.++.|+ .+|.++.+|+.+.+..  .++.+...    ..+|+.+.+
T Consensus       282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred             cccccccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence            455666676666666666665 3566666676666653  24445443    344554444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=89.60  E-value=0.5  Score=37.79  Aligned_cols=102  Identities=12%  Similarity=0.095  Sum_probs=56.9

Q ss_pred             hhhhhccCC-CCCc-----cCCcc-ccCCccEEeCcCCcchhh-HHHHHHhcccCCCCchhhccCccccccccCCCCCCc
Q 043683           63 LRYFHWHGC-PLKS-----LPSNI-HLEKLVLLEMPHSNIQQL-LDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLG  134 (256)
Q Consensus        63 L~~L~ls~n-~l~~-----lp~~~-~l~~L~~L~L~~n~l~~l-~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~  134 (256)
                      |+.|+|++| .++.     +-..+ .-+.|+.|+|++|.+... ...+                     -+.+..=+.|+
T Consensus        43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~al---------------------A~aL~~N~tL~  101 (197)
T 1pgv_A           43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL---------------------IELIETSPSLR  101 (197)
T ss_dssp             CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH---------------------HHHHHHCSSCC
T ss_pred             ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHH---------------------HHHHhcCCccC
Confidence            666666664 4543     22222 346788888888887643 0001                     11122235688


Q ss_pred             EEEccCCCCcc-----ccccccCCCCCCEEeeccCc--CCcc-----cCCC---CCCCcEEeccCc
Q 043683          135 KLDLQKNNFER-----IPESVIQLSKLGRLCLRYWE--RLQS-----LPKL---PCKLHELDAHHC  185 (256)
Q Consensus       135 ~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~~--~l~~-----lp~~---l~~L~~L~l~~~  185 (256)
                      +|+|+.|.|..     |-+.+..-+.|++|+++++.  .++.     +-..   -++|+.|+++.+
T Consensus       102 ~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          102 VLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             EEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             eEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            88888888762     33455556678888887532  2221     1111   357888888754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=88.89  E-value=0.58  Score=40.95  Aligned_cols=98  Identities=14%  Similarity=0.270  Sum_probs=60.0

Q ss_pred             ecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc--cCccccc--
Q 043683           53 HLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH--LNTLVLP--  124 (256)
Q Consensus        53 ~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~--L~~L~lp--  124 (256)
                      .+...+|.+.  |+.+.+..+ ...++.. | +..+|+.+.+..+ +           +.+++-.+.+|  |+++.+|  
T Consensus       255 ~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~-i-----------~~I~~~aF~~c~~L~~i~lp~~  321 (394)
T 4gt6_A          255 RIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSR-I-----------TELPESVFAGCISLKSIDIPEG  321 (394)
T ss_dssp             EECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-C-----------CEECTTTTTTCTTCCEEECCTT
T ss_pred             EcccceeeecccccEEecccc-cceecCcccccccccccccCCCc-c-----------cccCceeecCCCCcCEEEeCCc
Confidence            4555666665  666555433 2334433 3 5666777666532 2           22333333333  4444333  


Q ss_pred             ------cccCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeeccC
Q 043683          125 ------ENIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYW  164 (256)
Q Consensus       125 ------~~~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~  164 (256)
                            .+|.++.+|+.+.+.. .++.|. .+|.++.+|+.+++.++
T Consensus       322 v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          322 ITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred             ccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCc
Confidence                  3467889999999975 478887 47899999999999874

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=87.11  E-value=0.47  Score=37.94  Aligned_cols=33  Identities=15%  Similarity=0.177  Sum_probs=16.2

Q ss_pred             CCCcEEEccCCCCcc-----ccccccCCCCCCEEeecc
Q 043683          131 SSLGKLDLQKNNFER-----IPESVIQLSKLGRLCLRY  163 (256)
Q Consensus       131 ~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~  163 (256)
                      +.|+.|+|++|++..     |-+.+..-+.|+.|+|+.
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~  107 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES  107 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence            445555555555541     222333445555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=86.38  E-value=0.43  Score=41.35  Aligned_cols=38  Identities=11%  Similarity=0.093  Sum_probs=30.2

Q ss_pred             cccCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeecc
Q 043683          125 ENIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRY  163 (256)
Q Consensus       125 ~~~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~  163 (256)
                      .+|.++.+|+.+++..+ ++.|. .+|.++.+|+.+.+..
T Consensus       304 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          304 RVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             hhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            45778899999999754 78887 4788999999887753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	256
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.34
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.31
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.31
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.27
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.26
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.26
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.25
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.23
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.19
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.14
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.13
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.11
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.11
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.1
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.09
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.07
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.03
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.99
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.96
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.83
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.8
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.71
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.7
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.62
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.31
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.09
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.77
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.6
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.33
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.16
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.11
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.03
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.22
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.89
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	87.9
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	86.65

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=7.8e-14  Score=103.90  Aligned_cols=95  Identities=25%  Similarity=0.349  Sum_probs=83.4

Q ss_pred             hhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCC
Q 043683           64 RYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNN  142 (256)
Q Consensus        64 ~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~  142 (256)
                      |+|++++|.++.+|. + .+++|++|++++|.++.+                         |..++.+++|++|++++|.
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~l-------------------------p~~~~~l~~L~~L~l~~N~   54 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRAL-------------------------PPALAALRCLEVLQASDNA   54 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCC-------------------------CGGGGGCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcc-------------------------hhhhhhhhccccccccccc
Confidence            678999999999974 7 899999999999999754                         7778899999999999999


Q ss_pred             CccccccccCCCCCCEEeeccCcCCcccCCC-----CCCCcEEeccCcc
Q 043683          143 FERIPESVIQLSKLGRLCLRYWERLQSLPKL-----PCKLHELDAHHCT  186 (256)
Q Consensus       143 l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-----l~~L~~L~l~~~~  186 (256)
                      ++.+| +++.+++|+.|++++ +.+..+|..     +++|++|++++|+
T Consensus        55 i~~l~-~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          55 LENVD-GVANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CCCCG-GGTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             ccccC-ccccccccCeEECCC-CccCCCCCchhhcCCCCCCEEECCCCc
Confidence            99997 589999999999998 567777753     7899999999876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.1e-13  Score=115.81  Aligned_cols=156  Identities=20%  Similarity=0.205  Sum_probs=111.2

Q ss_pred             EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCccccCCccEEeCcCCcchhh---HHHHHHhcccCCCCchhhc
Q 043683           43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQL---LDSVRGILTRTPNTPLGQH  117 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l---~~~L~~Ll~~lp~~~l~~~  117 (256)
                      .+++++++...+....|.++  |++|++++|.++.+|....+++|++|++++|+++..   +.++..|    ..+.+..+
T Consensus        35 ~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L----~~L~l~~~  110 (266)
T d1p9ag_          35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL----TVLDVSFN  110 (266)
T ss_dssp             EEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTC----CEEECCSS
T ss_pred             EEECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccc
Confidence            45666666666777778777  999999999998887544788999999999988654   1111111    00000000


Q ss_pred             -cCccccccccCCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccccccc
Q 043683          118 -LNTLVLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESL  191 (256)
Q Consensus       118 -L~~L~lp~~~~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~  191 (256)
                       ... ..+..+..+.++++|++++|.++.+|+ .+..+.+|+.+++++| .+..+|..    +++|++|++++|. +..+
T Consensus       111 ~~~~-~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~l  187 (266)
T d1p9ag_         111 RLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LYTI  187 (266)
T ss_dssp             CCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCCC
T ss_pred             ccce-eeccccccccccccccccccccceeccccccccccchhcccccc-cccccCccccccccccceeecccCC-Cccc
Confidence             000 123456778899999999999998885 5678999999999984 57777753    7899999999975 7899


Q ss_pred             ccchhchhhhhhcc
Q 043683          192 SGLFSSFEARTQYF  205 (256)
Q Consensus       192 p~~~~~l~~l~~l~  205 (256)
                      |+.+..+.+++.+.
T Consensus       188 p~~~~~~~~L~~L~  201 (266)
T d1p9ag_         188 PKGFFGSHLLPFAF  201 (266)
T ss_dssp             CTTTTTTCCCSEEE
T ss_pred             ChhHCCCCCCCEEE
Confidence            99888777766543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.3e-13  Score=105.04  Aligned_cols=117  Identities=18%  Similarity=0.146  Sum_probs=93.1

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN  141 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n  141 (256)
                      +|+|++++|.|+.+|..+ .+++|++|++++|.++.+                          +.+..+++|++|++++|
T Consensus        20 lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--------------------------~~~~~l~~L~~L~ls~N   73 (162)
T d1a9na_          20 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--------------------------DGFPLLRRLKTLLVNNN   73 (162)
T ss_dssp             CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--------------------------CCCCCCSSCCEEECCSS
T ss_pred             CcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--------------------------CCcccCcchhhhhcccc
Confidence            789999999999998766 899999999999998753                          23578899999999999


Q ss_pred             CCccccccc-cCCCCCCEEeeccCcCCcccCCC-----CCCCcEEeccCccccccccc----chhchhhhhhccCC
Q 043683          142 NFERIPESV-IQLSKLGRLCLRYWERLQSLPKL-----PCKLHELDAHHCTALESLSG----LFSSFEARTQYFDL  207 (256)
Q Consensus       142 ~l~~lp~~i-~~l~~L~~L~l~~~~~l~~lp~~-----l~~L~~L~l~~~~~l~~~p~----~~~~l~~l~~l~~l  207 (256)
                      +++.+|+.+ ..+++|+.|++++| .+..+++.     +++|++|++++|+ +...|.    .+..+++++.+...
T Consensus        74 ~i~~l~~~~~~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          74 RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cccCCCccccccccccccceeccc-cccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCC
Confidence            999998754 67999999999984 56776652     7899999999986 555554    34555555555433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=1.8e-12  Score=96.25  Aligned_cols=108  Identities=16%  Similarity=0.234  Sum_probs=86.1

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCc
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNT  120 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~  120 (256)
                      +|+++++...+..  +.++  |++|++++|.++.+|+.+ .+++|++|++++|.++.+                      
T Consensus         3 L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l----------------------   58 (124)
T d1dcea3           3 LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV----------------------   58 (124)
T ss_dssp             EECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC----------------------
T ss_pred             EEcCCCCCCCCcc--cccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc----------------------
Confidence            5666665555542  5555  999999999999999888 999999999999999753                      


Q ss_pred             cccccccCCCCCCcEEEccCCCCcccc--ccccCCCCCCEEeeccCcCCcccCCC-------CCCCcEE
Q 043683          121 LVLPENIGQLSSLGKLDLQKNNFERIP--ESVIQLSKLGRLCLRYWERLQSLPKL-------PCKLHEL  180 (256)
Q Consensus       121 L~lp~~~~~l~~L~~L~l~~n~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~~-------l~~L~~L  180 (256)
                         | .++.+++|++|++++|+++.+|  ..++.+++|+.|++++|+ +...+..       +++|+.+
T Consensus        59 ---~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~-i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          59 ---D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ---G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred             ---C-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCc-CCcCccHHHHHHHHCcCcceE
Confidence               3 4689999999999999999887  468899999999999854 5554432       5666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.2e-12  Score=109.26  Aligned_cols=118  Identities=26%  Similarity=0.300  Sum_probs=89.7

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh----HHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEE
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL----LDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKL  136 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l----~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L  136 (256)
                      |++|++++|.+..+|..+ .+++|++|++++|.+.++    +..+..+    ..+.+.++ ++.+ .+..+..+++|+++
T Consensus        79 L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l----~~L~l~~n~l~~l-~~~~~~~l~~l~~l  153 (266)
T d1p9ag_          79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL----QELYLKGNELKTL-PPGLLTPTPKLEKL  153 (266)
T ss_dssp             CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC----CEEECTTSCCCCC-CTTTTTTCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccccccccceeecccccccccc----cccccccccccee-ccccccccccchhc
Confidence            999999999999999888 999999999999988765    1111111    11111111 1111 13455778999999


Q ss_pred             EccCCCCccccc-cccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcc
Q 043683          137 DLQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCT  186 (256)
Q Consensus       137 ~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~  186 (256)
                      ++++|+++.+|. .++.+++|++|++++ +.++.+|..   +++|+.|++++|+
T Consensus       154 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         154 SLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccccccccccCccccccccccceeeccc-CCCcccChhHCCCCCCCEEEecCCC
Confidence            999999998874 588999999999998 458899976   7899999999876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.31  E-value=1e-12  Score=111.93  Aligned_cols=42  Identities=24%  Similarity=0.469  Sum_probs=34.3

Q ss_pred             HHHHhh--hhhhhccC-CCC-CccCCcc-ccCCccEEeCcCCcchhh
Q 043683           57 DTFRKM--LRYFHWHG-CPL-KSLPSNI-HLEKLVLLEMPHSNIQQL   98 (256)
Q Consensus        57 ~~f~~l--L~~L~ls~-n~l-~~lp~~~-~l~~L~~L~L~~n~l~~l   98 (256)
                      ..+.++  |++|++++ |.+ +.+|+.| ++++|++|++++|++.++
T Consensus        70 ~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~  116 (313)
T d1ogqa_          70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA  116 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred             hHHhcCccccccccccccccccccccccccccccchhhhcccccccc
Confidence            445555  99999986 664 5899999 999999999999988765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.27  E-value=1.8e-12  Score=103.80  Aligned_cols=129  Identities=19%  Similarity=0.321  Sum_probs=86.2

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh--HHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEcc
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL--LDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ  139 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l--~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~  139 (256)
                      |++|++++|.++.+++ + .+++|++|++++|.+..+  +.++..|    ..+.++++-  ..-...+..+++|++|+++
T Consensus        64 L~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L----~~L~l~~~~--~~~~~~~~~l~~L~~L~l~  136 (199)
T d2omxa2          64 LTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNL----TGLTLFNNQ--ITDIDPLKNLTNLNRLELS  136 (199)
T ss_dssp             CCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTC----SEEECCSSC--CCCCGGGTTCTTCSEEECC
T ss_pred             cCcCccccccccCccc-ccCCccccccccccccccccccccccccc----ccccccccc--cccccccchhhhhHHhhhh
Confidence            8888898888888775 6 888899999988877654  1111111    001011110  0112346778889999999


Q ss_pred             CCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhh
Q 043683          140 KNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEART  202 (256)
Q Consensus       140 ~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~  202 (256)
                      +|++..+| .+..+.+|++|++++| .+..++..  +++|++|++++|. +..++ .+..+++|+
T Consensus       137 ~n~l~~~~-~l~~~~~L~~L~l~~n-~l~~l~~l~~l~~L~~L~ls~N~-i~~i~-~l~~L~~L~  197 (199)
T d2omxa2         137 SNTISDIS-ALSGLTSLQQLNFSSN-QVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLE  197 (199)
T ss_dssp             SSCCCCCG-GGTTCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCS
T ss_pred             hhhhcccc-cccccccccccccccc-cccCCccccCCCCCCEEECCCCC-CCCCc-cccCCCCCC
Confidence            88888776 5788889999999874 56677654  7889999999874 66665 344554443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.26  E-value=3.9e-12  Score=107.78  Aligned_cols=149  Identities=17%  Similarity=0.275  Sum_probs=106.7

Q ss_pred             EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh----HHHHHHh------ccc
Q 043683           43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL----LDSVRGI------LTR  108 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l----~~~L~~L------l~~  108 (256)
                      .++++++++..+.+..|.++  |++|++++|.+..+++. | .+++|++|++++|+++.+    +..+..+      +..
T Consensus        35 ~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~  114 (305)
T d1xkua_          35 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITK  114 (305)
T ss_dssp             EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCB
T ss_pred             EEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhh
Confidence            46677777777777778877  99999999998888654 6 899999999999988765    1111211      000


Q ss_pred             ----------------------------------CCCC---chhhc------------cCcc---------ccccccCCC
Q 043683          109 ----------------------------------TPNT---PLGQH------------LNTL---------VLPENIGQL  130 (256)
Q Consensus       109 ----------------------------------lp~~---~l~~~------------L~~L---------~lp~~~~~l  130 (256)
                                                        ++.+   .+..+            |+.|         ..+..+..+
T Consensus       115 l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  194 (305)
T d1xkua_         115 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGL  194 (305)
T ss_dssp             BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTC
T ss_pred             hhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhcc
Confidence                                              0000   00000            2222         446778888


Q ss_pred             CCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCccccccccc
Q 043683          131 SSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSG  193 (256)
Q Consensus       131 ~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~  193 (256)
                      +.+++|++++|.++.++ ..+.++++|++|++++| .++.+|..   +++|++|++++|. +..++.
T Consensus       195 ~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~  259 (305)
T d1xkua_         195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGS  259 (305)
T ss_dssp             TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCT
T ss_pred             ccccccccccccccccccccccccccceeeecccc-cccccccccccccCCCEEECCCCc-cCccCh
Confidence            99999999999999775 57889999999999985 68888875   7899999999864 777754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.26  E-value=6.4e-12  Score=99.87  Aligned_cols=100  Identities=18%  Similarity=0.214  Sum_probs=83.6

Q ss_pred             hhhhhccCCCCCc-cCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEcc
Q 043683           63 LRYFHWHGCPLKS-LPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ  139 (256)
Q Consensus        63 L~~L~ls~n~l~~-lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~  139 (256)
                      +++|++++|.++. ++.. | .+++|++|++++|.+..+                        .+..+..+++|++|+++
T Consensus        31 l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~------------------------~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI------------------------EPNAFEGASHIQELQLG   86 (192)
T ss_dssp             CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB------------------------CTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCCcccccccccCCCceEeeeeccccccccc------------------------cccccccccccceeeec
Confidence            8899999999875 5444 5 799999999999988753                        35677889999999999


Q ss_pred             CCCCccccc-cccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccc
Q 043683          140 KNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTA  187 (256)
Q Consensus       140 ~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~  187 (256)
                      +|+++.+|+ .|.++++|++|++++ +.++.+|..    +++|++|++++++.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccccccCHHHHhCCCcccccccCC-ccccccCHHHhcCCccccccccccccc
Confidence            999998875 688999999999998 568888764    78899999998753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=7.8e-12  Score=99.36  Aligned_cols=116  Identities=19%  Similarity=0.272  Sum_probs=93.8

Q ss_pred             hhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCCC
Q 043683           64 RYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNF  143 (256)
Q Consensus        64 ~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~l  143 (256)
                      +.++.+++.++.+|.++ .+++++|+|++|+|+..                       .-+..|+.+++|++|++++|++
T Consensus        11 ~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~-----------------------~~~~~f~~l~~L~~L~L~~N~i   66 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRI-----------------------SSDGLFGRLPHLVKLELKRNQL   66 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSB-----------------------CCSCSGGGCTTCCEEECCSSCC
T ss_pred             CEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCccc-----------------------ccccccCCCceEeeeecccccc
Confidence            45678889999999987 47899999999999642                       1145668899999999999999


Q ss_pred             cccc-ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccc-cchhchhhhhhcc
Q 043683          144 ERIP-ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLS-GLFSSFEARTQYF  205 (256)
Q Consensus       144 ~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p-~~~~~l~~l~~l~  205 (256)
                      ..++ ..+..+++|++|++++ +.+..+|..    +++|++|++++|. +..+| ..+..+.++..+.
T Consensus        67 ~~~~~~~~~~~~~L~~L~Ls~-N~l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~  132 (192)
T d1w8aa_          67 TGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEE
T ss_pred             ccccccccccccccceeeecc-ccccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCccccccc
Confidence            9776 6788999999999998 568888764    8899999999976 56664 4677777776543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=9.8e-12  Score=104.43  Aligned_cols=36  Identities=14%  Similarity=0.317  Sum_probs=24.6

Q ss_pred             hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh
Q 043683           63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL   98 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l   98 (256)
                      +++|++++|+++.+|+. | ++++|++|++++|.++.+
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i   71 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI   71 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCEEECcCCcCCCCCHHHhhcccccccccccccccccc
Confidence            66777777777777654 4 677777777777766554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=5.5e-12  Score=101.73  Aligned_cols=132  Identities=19%  Similarity=0.262  Sum_probs=81.8

Q ss_pred             hhhhhccCCCCCccCCccccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhc-cCccccccccCCCCCCcEEEccCC
Q 043683           63 LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQH-LNTLVLPENIGQLSSLGKLDLQKN  141 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~-L~~L~lp~~~~~l~~L~~L~l~~n  141 (256)
                      |++|++++|.++.+++.-.+++|++|++++|+++.+. .+.. +..+..+.+.++ .   .-...+..+++++++++++|
T Consensus        70 L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~-~l~~-l~~L~~L~l~~~~~---~~~~~l~~l~~l~~l~~~~n  144 (210)
T d1h6ta2          70 VTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS-SLKD-LKKLKSLSLEHNGI---SDINGLVHLPQLESLYLGNN  144 (210)
T ss_dssp             CCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG-GGTT-CTTCCEEECTTSCC---CCCGGGGGCTTCCEEECCSS
T ss_pred             CCEEeCCCccccCccccccCccccccccccccccccc-cccc-cccccccccccccc---cccccccccccccccccccc
Confidence            8899999999888874338899999999999887641 1111 011111111111 0   01234566777788887777


Q ss_pred             CCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchhhhhh
Q 043683          142 NFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEARTQ  203 (256)
Q Consensus       142 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~  203 (256)
                      .++.++ .+..+++|+.+++++| .+..++..  +++|++|++++|. +..+| .+..+++|+.
T Consensus       145 ~l~~~~-~~~~l~~L~~l~l~~n-~l~~i~~l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~  204 (210)
T d1h6ta2         145 KITDIT-VLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDV  204 (210)
T ss_dssp             CCCCCG-GGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSE
T ss_pred             cccccc-cccccccccccccccc-cccccccccCCCCCCEEECCCCC-CCCCh-hhcCCCCCCE
Confidence            777654 5667788888888874 45566543  7788888888764 56665 3555554443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.14  E-value=1.3e-11  Score=100.45  Aligned_cols=132  Identities=17%  Similarity=0.230  Sum_probs=86.4

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh--HHHHHHhcccCCCCchhhc-------------cCcc-----
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL--LDSVRGILTRTPNTPLGQH-------------LNTL-----  121 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l--~~~L~~Ll~~lp~~~l~~~-------------L~~L-----  121 (256)
                      |++|++++|.+..+++ + .+++|+++++++|.++.+  +.+++.|    ..+.+..+             +..+     
T Consensus        65 L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L----~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~  139 (227)
T d1h6ua2          65 LIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSI----KTLDLTSTQITDVTPLAGLSNLQVLYLDLN  139 (227)
T ss_dssp             CCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTC----CEEECTTSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             CcEeecCCceeecccc-ccccccccccccccccccccccccccccc----cccccccccccccchhccccchhhhhchhh
Confidence            7777777777766654 4 677777777777766544  1222221    10111111             1111     


Q ss_pred             --ccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhc
Q 043683          122 --VLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSS  197 (256)
Q Consensus       122 --~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~  197 (256)
                        .....+...++|++|++++|.++.++ .++++++|+.|++++| .+..+|..  +++|++|++++|. +..++. +++
T Consensus       140 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n-~l~~l~~l~~l~~L~~L~Ls~N~-lt~i~~-l~~  215 (227)
T d1h6ua2         140 QITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ-ISDVSP-LAN  215 (227)
T ss_dssp             CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC-CCBCGG-GTT
T ss_pred             hhchhhhhccccccccccccccccccch-hhcccccceecccCCC-ccCCChhhcCCCCCCEEECcCCc-CCCCcc-ccc
Confidence              22334677888999999999888766 4889999999999985 57788765  8899999999984 777764 555


Q ss_pred             hhhhhh
Q 043683          198 FEARTQ  203 (256)
Q Consensus       198 l~~l~~  203 (256)
                      +++|..
T Consensus       216 l~~L~~  221 (227)
T d1h6ua2         216 TSNLFI  221 (227)
T ss_dssp             CTTCCE
T ss_pred             CCCCCE
Confidence            555543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.13  E-value=1.8e-11  Score=104.09  Aligned_cols=115  Identities=20%  Similarity=0.252  Sum_probs=90.2

Q ss_pred             hhhhhccCCCCC---ccCCcc-ccCCccEEeCcC-CcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEE
Q 043683           63 LRYFHWHGCPLK---SLPSNI-HLEKLVLLEMPH-SNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLD  137 (256)
Q Consensus        63 L~~L~ls~n~l~---~lp~~~-~l~~L~~L~L~~-n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~  137 (256)
                      ++.|++++|.+.   .+|+.+ .+++|++|+|++ |.+.+                        .+|.+|+++++|++|+
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g------------------------~iP~~i~~L~~L~~L~  107 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG------------------------PIPPAIAKLTQLHYLY  107 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES------------------------CCCGGGGGCTTCSEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCcccccccccccccccc------------------------ccccccccccccchhh
Confidence            777899998865   589999 999999999987 77764                        2477788888888888


Q ss_pred             ccCCCCcccc-ccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcccccccccchhchhhh
Q 043683          138 LQKNNFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEAR  201 (256)
Q Consensus       138 l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~~l~~~p~~~~~l~~l  201 (256)
                      +++|++..++ ..+..+.+|+.+++++|.....+|..   ++.++.+++++|.....+|..+..+..+
T Consensus       108 Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l  175 (313)
T d1ogqa_         108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL  175 (313)
T ss_dssp             EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred             hccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccc
Confidence            8888888554 56778888888888887767777765   7778888888877666777777766554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.11  E-value=1.8e-11  Score=98.65  Aligned_cols=113  Identities=25%  Similarity=0.350  Sum_probs=83.4

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh--HHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEcc
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL--LDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ  139 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l--~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~  139 (256)
                      |++|++++|.++.+|. + .+++|+.|++++|.+..+  +.++..+    ..+.++.+  .+.-+..+..+++|++++++
T Consensus        92 L~~L~l~~n~i~~l~~-l~~l~~L~~L~l~~~~~~~~~~l~~l~~l----~~l~~~~n--~l~~~~~~~~l~~L~~l~l~  164 (210)
T d1h6ta2          92 LGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQL----ESLYLGNN--KITDITVLSRLTKLDTLSLE  164 (210)
T ss_dssp             CCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTC----CEEECCSS--CCCCCGGGGGCTTCSEEECC
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccccccccc----cccccccc--cccccccccccccccccccc
Confidence            9999999999999984 6 899999999999987653  1111111    00000000  00113345778999999999


Q ss_pred             CCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccC
Q 043683          140 KNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHH  184 (256)
Q Consensus       140 ~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~  184 (256)
                      +|+++.++ .+.++++|+.|++++| .++.+|..  +++|++|++++
T Consensus       165 ~n~l~~i~-~l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         165 DNQISDIV-PLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             SSCCCCCG-GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEE
T ss_pred             cccccccc-cccCCCCCCEEECCCC-CCCCChhhcCCCCCCEEEccC
Confidence            99999887 4889999999999985 57888865  88999999864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3e-11  Score=93.65  Aligned_cols=113  Identities=17%  Similarity=0.211  Sum_probs=90.0

Q ss_pred             EeeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccC
Q 043683           43 CLGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLN  119 (256)
Q Consensus        43 ~l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~  119 (256)
                      .+|++++++..+. +.+..+  |++|++++|.++.++ .+ .+++|++|++++|+++.+                     
T Consensus        22 ~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l---------------------   78 (162)
T d1a9na_          22 ELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRI---------------------   78 (162)
T ss_dssp             EEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEE---------------------
T ss_pred             EEECCCCCCCccC-ccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCC---------------------
Confidence            3666776666564 344444  999999999999996 57 899999999999999764                     


Q ss_pred             ccccccc-cCCCCCCcEEEccCCCCccccc--cccCCCCCCEEeeccCcCCcccCCC-------CCCCcEEecc
Q 043683          120 TLVLPEN-IGQLSSLGKLDLQKNNFERIPE--SVIQLSKLGRLCLRYWERLQSLPKL-------PCKLHELDAH  183 (256)
Q Consensus       120 ~L~lp~~-~~~l~~L~~L~l~~n~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~-------l~~L~~L~l~  183 (256)
                          |.. +..+++|++|++++|+++.+++  .+..+++|++|++++|+ +...|..       +++|++||-.
T Consensus        79 ----~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          79 ----GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             ----CSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ----CccccccccccccceeccccccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCC
Confidence                333 3568999999999999998874  68899999999999954 6777752       7899998744

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1e-10  Score=98.06  Aligned_cols=81  Identities=19%  Similarity=0.194  Sum_probs=57.8

Q ss_pred             ccccCCCCCCcEEEccCCCCcccc-ccccCCCCCCEEeeccCcCCccc-CCC---CCCCcEEeccCcccccccccchhch
Q 043683          124 PENIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLCLRYWERLQSL-PKL---PCKLHELDAHHCTALESLSGLFSSF  198 (256)
Q Consensus       124 p~~~~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~l-p~~---l~~L~~L~l~~~~~l~~~p~~~~~l  198 (256)
                      +..|..+++|+.|++++|+++.+| ..+.++++|+++++++|. +..+ |..   +++|++|++++|......|..++.+
T Consensus       146 ~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~  224 (284)
T d1ozna_         146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL  224 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred             hhHhccccchhhcccccCcccccchhhhccccccchhhhhhcc-ccccChhHhhhhhhcccccccccccccccccccccc
Confidence            345677888888888888888776 467788888888888755 4444 443   6788888888876555555667777


Q ss_pred             hhhhhcc
Q 043683          199 EARTQYF  205 (256)
Q Consensus       199 ~~l~~l~  205 (256)
                      .+++.+.
T Consensus       225 ~~L~~L~  231 (284)
T d1ozna_         225 RALQYLR  231 (284)
T ss_dssp             TTCCEEE
T ss_pred             cccCEEE
Confidence            6666543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.09  E-value=6.8e-11  Score=100.64  Aligned_cols=65  Identities=25%  Similarity=0.399  Sum_probs=48.2

Q ss_pred             CCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCCCCCCcEEeccCcccccccccchhch
Q 043683          129 QLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSF  198 (256)
Q Consensus       129 ~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~L~~L~l~~~~~l~~~p~~~~~l  198 (256)
                      .+++|++|++++|+++.+|+.   +++|+.|++++| .++.+|..+++|++|++++|+ +..+|.....+
T Consensus       282 ~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~L~~l~~~~~~L~~L~L~~N~-L~~lp~~~~~L  346 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLKQLHVEYNP-LREFPDIPESV  346 (353)
T ss_dssp             CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSSCCCCCTTC
T ss_pred             cCCCCCEEECCCCccCccccc---cCCCCEEECCCC-cCCccccccCCCCEEECcCCc-CCCCCcccccc
Confidence            356788888888888888854   567888888874 577888777788888888875 77777655444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.07  E-value=1.9e-10  Score=97.04  Aligned_cols=141  Identities=15%  Similarity=0.216  Sum_probs=91.8

Q ss_pred             hhhhhccCCCCCccCCc-c-ccCCccEEeCcCCcchhh----HHHHHHh---------cccCCCCchhhc---------c
Q 043683           63 LRYFHWHGCPLKSLPSN-I-HLEKLVLLEMPHSNIQQL----LDSVRGI---------LTRTPNTPLGQH---------L  118 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l----~~~L~~L---------l~~lp~~~l~~~---------L  118 (256)
                      +++|++++|.++.+|+. | .+++|++|++++|.+..+    +.++..|         ++.+|......+         +
T Consensus        33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l  112 (305)
T d1xkua_          33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI  112 (305)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCC
T ss_pred             CCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccch
Confidence            99999999999999974 7 899999999999998876    3344433         444543211110         0


Q ss_pred             Ccc-------------------------ccccccCC---------------------CCCCcEEEccCCCCc-ccccccc
Q 043683          119 NTL-------------------------VLPENIGQ---------------------LSSLGKLDLQKNNFE-RIPESVI  151 (256)
Q Consensus       119 ~~L-------------------------~lp~~~~~---------------------l~~L~~L~l~~n~l~-~lp~~i~  151 (256)
                      ..+                         ..+..+..                     +++|+.|++++|... ..+..+.
T Consensus       113 ~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~  192 (305)
T d1xkua_         113 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLK  192 (305)
T ss_dssp             CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGT
T ss_pred             hhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhh
Confidence            000                         11122222                     455666666665555 3345667


Q ss_pred             CCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCcccccccccchhchhhhhhcc
Q 043683          152 QLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESLSGLFSSFEARTQYF  205 (256)
Q Consensus       152 ~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~p~~~~~l~~l~~l~  205 (256)
                      +++.++.|++++| .+..++..    +++|++|++++| .+..+|..+..+++++.+.
T Consensus       193 ~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~  248 (305)
T d1xkua_         193 GLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVY  248 (305)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEE
T ss_pred             ccccccccccccc-cccccccccccccccceeeecccc-cccccccccccccCCCEEE
Confidence            7777788888774 45666543    678889999887 4778888887777766543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.3e-10  Score=85.85  Aligned_cols=98  Identities=19%  Similarity=0.196  Sum_probs=81.4

Q ss_pred             hhhhccCCCCCccCCcc-ccCCccEEeCcCC-cchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCC
Q 043683           64 RYFHWHGCPLKSLPSNI-HLEKLVLLEMPHS-NIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKN  141 (256)
Q Consensus        64 ~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n-~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n  141 (256)
                      ..++.+++.+..+|..+ .+++|++|++++| .++.+                        -+.+|.++++|+.|++++|
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i------------------------~~~~f~~l~~L~~L~Ls~N   66 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHL------------------------ELRDLRGLGELRNLTIVKS   66 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEE------------------------CGGGSCSCCCCSEEECCSS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCcccccc------------------------CchhhccccccCcceeecc
Confidence            34567788888899898 8999999999766 47653                        1356789999999999999


Q ss_pred             CCcccc-ccccCCCCCCEEeeccCcCCcccCCC---CCCCcEEeccCcc
Q 043683          142 NFERIP-ESVIQLSKLGRLCLRYWERLQSLPKL---PCKLHELDAHHCT  186 (256)
Q Consensus       142 ~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~---l~~L~~L~l~~~~  186 (256)
                      +++.++ .+|..+++|++|++++ +.++.+|..   ..+|++|++++|+
T Consensus        67 ~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          67 GLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             CCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             ccCCcccccccccccccceeccC-CCCcccChhhhccccccccccCCCc
Confidence            999996 5689999999999998 668899876   4579999999875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.99  E-value=3.2e-12  Score=102.47  Aligned_cols=104  Identities=13%  Similarity=0.202  Sum_probs=83.1

Q ss_pred             hHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCC
Q 043683           56 PDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSS  132 (256)
Q Consensus        56 ~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~  132 (256)
                      +..|..+  |++|++++|.++.++ .+ .+++|++|++++|.++.+                         |..+..+++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i-------------------------~~~~~~~~~   94 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKI-------------------------ENLDAVADT   94 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSC-------------------------SSHHHHHHH
T ss_pred             hhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccc-------------------------ccccccccc
Confidence            4567777  999999999999996 57 899999999999998753                         333334457


Q ss_pred             CcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC-----CCCCcEEeccCccc
Q 043683          133 LGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL-----PCKLHELDAHHCTA  187 (256)
Q Consensus       133 L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-----l~~L~~L~l~~~~~  187 (256)
                      |++|++++|+++.++ .+..+++|+.|++++ +.+..++..     +++|++|++++|+.
T Consensus        95 L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_          95 LEELWISYNQIASLS-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             CCEEECSEEECCCHH-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccccccccc-ccccccccccccccc-chhccccccccccCCCccceeecCCCcc
Confidence            899999999999876 578899999999998 446666532     78899999998763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.97  E-value=5.3e-10  Score=88.97  Aligned_cols=35  Identities=11%  Similarity=0.290  Sum_probs=31.1

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL   98 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l   98 (256)
                      +++|++++|.+..++ ++ .+++|++|++++|+++.+
T Consensus        42 l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~   77 (199)
T d2omxa2          42 VTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDI   77 (199)
T ss_dssp             CCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC
T ss_pred             CCEEECCCCCCCCcc-ccccCCCcCcCccccccccCc
Confidence            889999999999885 57 899999999999998764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.96  E-value=2.2e-10  Score=98.89  Aligned_cols=135  Identities=24%  Similarity=0.329  Sum_probs=82.9

Q ss_pred             hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhh--H---HHHHHh------cccCCCCchhhc--cCcc-------
Q 043683           63 LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQL--L---DSVRGI------LTRTPNTPLGQH--LNTL-------  121 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l--~---~~L~~L------l~~lp~~~l~~~--L~~L-------  121 (256)
                      |++|++++|.++.+| .+ .+++|+.|++++|.++++  +   ++|+.+      +..++.+  ..+  ++.+       
T Consensus       221 L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~~~l~~l~~~~n~l  297 (384)
T d2omza2         221 LDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL--AGLTALTNLELNENQL  297 (384)
T ss_dssp             CCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGG--TTCTTCSEEECCSSCC
T ss_pred             CCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCcc--cccccccccccccccc
Confidence            666666666666654 33 566666666666665543  1   112211      1111110  000  1111       


Q ss_pred             ccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCcccccccccchhchh
Q 043683          122 VLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFE  199 (256)
Q Consensus       122 ~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~~~l~~~p~~~~~l~  199 (256)
                      .-...+..++++++|++++|+++.++ .+..+++|++|++++| .++.++..  +++|++|++++|. +..++. +.+++
T Consensus       298 ~~~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n-~l~~l~~l~~l~~L~~L~l~~N~-l~~l~~-l~~l~  373 (384)
T d2omza2         298 EDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANN-KVSDVSSLANLTNINWLSAGHNQ-ISDLTP-LANLT  373 (384)
T ss_dssp             SCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSC-CCBCGG-GTTCT
T ss_pred             ccccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCC-CCCCChhHcCCCCCCEEECCCCc-CCCChh-hccCC
Confidence            11234677888999999999998886 4788999999999985 57777755  8899999998875 555653 56665


Q ss_pred             hhhhc
Q 043683          200 ARTQY  204 (256)
Q Consensus       200 ~l~~l  204 (256)
                      +|+.|
T Consensus       374 ~L~~L  378 (384)
T d2omza2         374 RITQL  378 (384)
T ss_dssp             TCSEE
T ss_pred             CCCEe
Confidence            55544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.89  E-value=4.5e-10  Score=90.95  Aligned_cols=137  Identities=19%  Similarity=0.340  Sum_probs=93.9

Q ss_pred             CCCCeeeecChHHHH------hh--hhhhhccCCCCCccCCccccCCccEEeCcCCcchhh--H---HHHHHh-c--ccC
Q 043683           46 MSKVKEIHLNPDTFR------KM--LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQL--L---DSVRGI-L--TRT  109 (256)
Q Consensus        46 l~~l~~~~l~~~~f~------~l--L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l--~---~~L~~L-l--~~l  109 (256)
                      +++++.++++.+.+.      ++  ++++++++|.++.++.-..+++|++++++++....+  +   ..+..+ +  ..+
T Consensus        62 l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~  141 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQI  141 (227)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             CCCCcEeecCCceeeccccccccccccccccccccccccccccccccccccccccccccccchhccccchhhhhchhhhh
Confidence            455556655554433      33  899999999998887423899999999999876654  1   111111 0  001


Q ss_pred             CC-Cchhhc--cCcc-------ccccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCC
Q 043683          110 PN-TPLGQH--LNTL-------VLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKL  177 (256)
Q Consensus       110 p~-~~l~~~--L~~L-------~lp~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L  177 (256)
                      .. ..+..+  |+.|       .-...++++++|++|++++|+++.+| .++++++|++|++++| .++.++..  +++|
T Consensus       142 ~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~-~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L  219 (227)
T d1h6ua2         142 TNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNN-QISDVSPLANTSNL  219 (227)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTS-CCCBCGGGTTCTTC
T ss_pred             chhhhhccccccccccccccccccchhhcccccceecccCCCccCCCh-hhcCCCCCCEEECcCC-cCCCCcccccCCCC
Confidence            00 001111  4444       11244789999999999999999987 4889999999999996 58888765  8999


Q ss_pred             cEEeccC
Q 043683          178 HELDAHH  184 (256)
Q Consensus       178 ~~L~l~~  184 (256)
                      ++|++++
T Consensus       220 ~~L~lsn  226 (227)
T d1h6ua2         220 FIVTLTN  226 (227)
T ss_dssp             CEEEEEE
T ss_pred             CEEEeeC
Confidence            9999863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.83  E-value=1e-09  Score=94.61  Aligned_cols=120  Identities=18%  Similarity=0.252  Sum_probs=84.9

Q ss_pred             hhhhhccCCCCCccCCccccCCccEEeCcCCcchhh--HHHHHHh---------cccCCCCchhhccCcc--------cc
Q 043683           63 LRYFHWHGCPLKSLPSNIHLEKLVLLEMPHSNIQQL--LDSVRGI---------LTRTPNTPLGQHLNTL--------VL  123 (256)
Q Consensus        63 L~~L~ls~n~l~~lp~~~~l~~L~~L~L~~n~l~~l--~~~L~~L---------l~~lp~~~l~~~L~~L--------~l  123 (256)
                      |++|++++|.+..+++...+++|++|++++|.++.+  +.++..+         +..++.+.-...++.|        .+
T Consensus       243 L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l  322 (384)
T d2omza2         243 LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI  322 (384)
T ss_dssp             CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC
T ss_pred             cchhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCC
Confidence            888999999988877533888999999999888765  2222221         1111111000002222        22


Q ss_pred             ccccCCCCCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCC--CCCCcEEeccCc
Q 043683          124 PENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKL--PCKLHELDAHHC  185 (256)
Q Consensus       124 p~~~~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~--l~~L~~L~l~~~  185 (256)
                      + .+..+++|++|++++|+++.+| .++++++|++|++++| .+..+++.  +++|+.|++++|
T Consensus       323 ~-~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         323 S-PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             G-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCCE
T ss_pred             c-ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCC-cCCCChhhccCCCCCEeeCCCC
Confidence            2 3788999999999999999887 6999999999999985 57777655  889999999875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.2e-09  Score=87.21  Aligned_cols=158  Identities=16%  Similarity=0.193  Sum_probs=94.9

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCc-cCCc-c-ccCCccEEeCcC-Ccchhh----H---HHHHHh-----
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKS-LPSN-I-HLEKLVLLEMPH-SNIQQL----L---DSVRGI-----  105 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~-lp~~-~-~l~~L~~L~L~~-n~l~~l----~---~~L~~L-----  105 (256)
                      ++++++.+..+...+|.++  |++|++++|.+.. +|.. | .+++++++.+.. |.+...    +   ++|+.+     
T Consensus        34 L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          34 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT  113 (242)
T ss_dssp             EEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESC
T ss_pred             EECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchh
Confidence            3444444445566667776  7888888777543 4443 4 677777776643 444432    1   223332     


Q ss_pred             -cccCCCCchhhccCcc-----------cc-ccccCCC-CCCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccC
Q 043683          106 -LTRTPNTPLGQHLNTL-----------VL-PENIGQL-SSLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLP  171 (256)
Q Consensus       106 -l~~lp~~~l~~~L~~L-----------~l-p~~~~~l-~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp  171 (256)
                       +...+.......++.+           .+ +..+..+ ..++.|++++|+++.++.......++..+....++.++.+|
T Consensus       114 ~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~  193 (242)
T d1xwdc1         114 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP  193 (242)
T ss_dssp             CCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCC
T ss_pred             hhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhcccccccccccccc
Confidence             2222222111112222           22 2334444 46888999999999888777777777777665567788888


Q ss_pred             CC----CCCCcEEeccCccccccccc-chhchhhhh
Q 043683          172 KL----PCKLHELDAHHCTALESLSG-LFSSFEART  202 (256)
Q Consensus       172 ~~----l~~L~~L~l~~~~~l~~~p~-~~~~l~~l~  202 (256)
                      ..    +++|++|++++|. +..+|. .+.++..++
T Consensus       194 ~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~  228 (242)
T d1xwdc1         194 NDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLR  228 (242)
T ss_dssp             TTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEE
T ss_pred             HHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccc
Confidence            64    7899999999865 667765 355555444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.71  E-value=1.5e-10  Score=92.44  Aligned_cols=94  Identities=21%  Similarity=0.206  Sum_probs=75.1

Q ss_pred             eeCCCCeeeecChHHHHhh--hhhhhccCCCCCccCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCc
Q 043683           44 LGMSKVKEIHLNPDTFRKM--LRYFHWHGCPLKSLPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNT  120 (256)
Q Consensus        44 l~l~~l~~~~l~~~~f~~l--L~~L~ls~n~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~  120 (256)
                      ++++++++..+.  .|.++  |++|++++|.++.+|..+ .+++|++|++++|.++.+                      
T Consensus        53 L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l----------------------  108 (198)
T d1m9la_          53 LALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL----------------------  108 (198)
T ss_dssp             EECSEEEESCCC--CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH----------------------
T ss_pred             eECcccCCCCcc--cccCCccccChhhccccccccccccccccccccccccccccccc----------------------
Confidence            445555554553  37776  999999999999998766 678999999999998764                      


Q ss_pred             cccccccCCCCCCcEEEccCCCCcccc--ccccCCCCCCEEeeccCc
Q 043683          121 LVLPENIGQLSSLGKLDLQKNNFERIP--ESVIQLSKLGRLCLRYWE  165 (256)
Q Consensus       121 L~lp~~~~~l~~L~~L~l~~n~l~~lp--~~i~~l~~L~~L~l~~~~  165 (256)
                          ..+..+++|++|++++|+++.++  ..+..+++|+.|++++|+
T Consensus       109 ----~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         109 ----SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ----HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ----ccccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence                12355678999999999999887  368899999999999865

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=7.9e-09  Score=79.09  Aligned_cols=79  Identities=22%  Similarity=0.212  Sum_probs=67.5

Q ss_pred             hhhhhccCCC-CCccCCc-c-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEcc
Q 043683           63 LRYFHWHGCP-LKSLPSN-I-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ  139 (256)
Q Consensus        63 L~~L~ls~n~-l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~  139 (256)
                      +++|++++|+ ++.++.. | .+++|+.|++++|+|+.+                        -|.+|..+++|++|+|+
T Consensus        33 l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i------------------------~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV------------------------APDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE------------------------CTTGGGSCSCCCEEECC
T ss_pred             cCeeecCCCccccccCchhhccccccCcceeeccccCCc------------------------ccccccccccccceecc
Confidence            8888997765 9999876 6 899999999999999764                        25668899999999999


Q ss_pred             CCCCccccccccCCCCCCEEeeccCc
Q 043683          140 KNNFERIPESVIQLSKLGRLCLRYWE  165 (256)
Q Consensus       140 ~n~l~~lp~~i~~l~~L~~L~l~~~~  165 (256)
                      +|+++.+|..+....+|+.|++++|+
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             CCCCcccChhhhccccccccccCCCc
Confidence            99999999876666689999999854

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.62  E-value=4.4e-08  Score=82.70  Aligned_cols=52  Identities=29%  Similarity=0.361  Sum_probs=35.3

Q ss_pred             CCcEEEccCCCCccccccccCCCCCCEEeeccCcCCcccCCCCCCCcEEeccCc
Q 043683          132 SLGKLDLQKNNFERIPESVIQLSKLGRLCLRYWERLQSLPKLPCKLHELDAHHC  185 (256)
Q Consensus       132 ~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~L~~L~l~~~  185 (256)
                      .|++|++++|.++.+|+ ++.+++|+.|+++++ .+...|.....+..+.+..+
T Consensus        99 ~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~-~~~~~~~~~~~l~~l~~~~~  150 (353)
T d1jl5a_          99 LLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGNN  150 (353)
T ss_dssp             TCCEEECCSSCCSSCCC-CTTCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS
T ss_pred             ccccccccccccccccc-hhhhccceeeccccc-cccccccccccccchhhccc
Confidence            57788888888877773 567778888888764 35555555566666666543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.1e-08  Score=81.24  Aligned_cols=130  Identities=20%  Similarity=0.230  Sum_probs=84.6

Q ss_pred             hhhhhccC-CCCCccCCc-c-ccCCccEEeCcCCcchhh-----HHHHHHh---------cccCCCCchhhc---cCcc-
Q 043683           63 LRYFHWHG-CPLKSLPSN-I-HLEKLVLLEMPHSNIQQL-----LDSVRGI---------LTRTPNTPLGQH---LNTL-  121 (256)
Q Consensus        63 L~~L~ls~-n~l~~lp~~-~-~l~~L~~L~L~~n~l~~l-----~~~L~~L---------l~~lp~~~l~~~---L~~L-  121 (256)
                      ++++.+.. |.+..++.. + ++++|+++++++|.++..     +..++.+         +..++.-.+.++   ++.+ 
T Consensus        80 l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~  159 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW  159 (242)
T ss_dssp             CCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred             cccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeee
Confidence            67777654 567776655 5 899999999999988754     1122222         222222112111   1112 


Q ss_pred             -------ccccccCCCCCCcEEE-ccCCCCccccc-cccCCCCCCEEeeccCcCCcccCCC-CCCCcEEeccCccccccc
Q 043683          122 -------VLPENIGQLSSLGKLD-LQKNNFERIPE-SVIQLSKLGRLCLRYWERLQSLPKL-PCKLHELDAHHCTALESL  191 (256)
Q Consensus       122 -------~lp~~~~~l~~L~~L~-l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~-l~~L~~L~l~~~~~l~~~  191 (256)
                             .++......++++.+. +++|+++.+|. .+.++++|++|++++ +.++.+|.. +.+|..|..-++..++.+
T Consensus       160 l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~l~~~~l~~l  238 (242)
T d1xwdc1         160 LNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSYGLENLKKLRARSTYNLKKL  238 (242)
T ss_dssp             CCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT-SCCCCCCSSSCTTCCEEESSSEESSSCS
T ss_pred             cccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCC-CcCCccCHHHHcCCcccccCcCCCCCcC
Confidence                   3455445566666664 56889999986 478999999999998 558899886 777777766555666666


Q ss_pred             cc
Q 043683          192 SG  193 (256)
Q Consensus       192 p~  193 (256)
                      |.
T Consensus       239 p~  240 (242)
T d1xwdc1         239 PT  240 (242)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.3e-07  Score=77.30  Aligned_cols=125  Identities=16%  Similarity=0.240  Sum_probs=64.7

Q ss_pred             hhhhhccCCCCCc-cCCcc-ccCCccEEeCcCC-cchhh-HHHH-HHhcccCCCCchhhc--cCccccccccC-CCCCCc
Q 043683           63 LRYFHWHGCPLKS-LPSNI-HLEKLVLLEMPHS-NIQQL-LDSV-RGILTRTPNTPLGQH--LNTLVLPENIG-QLSSLG  134 (256)
Q Consensus        63 L~~L~ls~n~l~~-lp~~~-~l~~L~~L~L~~n-~l~~l-~~~L-~~Ll~~lp~~~l~~~--L~~L~lp~~~~-~l~~L~  134 (256)
                      |++|+++++.+.. .+..+ .+++|++|+++++ .++.. +..+ +. +..+..+.+++|  ++.-.+...+. ..++|+
T Consensus        73 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~-~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~  151 (284)
T d2astb2          73 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-CSRLDELNLSWCFDFTEKHVQVAVAHVSETIT  151 (284)
T ss_dssp             CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred             cccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHH-HHhccccccccccccccccchhhhcccccccc
Confidence            7888888877543 33445 6778888888875 55432 1111 11 122222222222  11001111122 235677


Q ss_pred             EEEccCC--CCc--cccccccCCCCCCEEeeccCcCCcc--cCCC--CCCCcEEeccCcccc
Q 043683          135 KLDLQKN--NFE--RIPESVIQLSKLGRLCLRYWERLQS--LPKL--PCKLHELDAHHCTAL  188 (256)
Q Consensus       135 ~L~l~~n--~l~--~lp~~i~~l~~L~~L~l~~~~~l~~--lp~~--l~~L~~L~l~~~~~l  188 (256)
                      .|++++.  .++  .+......+++|++|++++|..++.  +...  +++|++|++++|..+
T Consensus       152 ~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i  213 (284)
T d2astb2         152 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI  213 (284)
T ss_dssp             EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred             hhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCC
Confidence            7777742  333  2333345677788888877665542  2222  667888888877654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.6e-06  Score=72.01  Aligned_cols=100  Identities=14%  Similarity=0.206  Sum_probs=66.3

Q ss_pred             hhhhhccCCCCCc--cCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEcc
Q 043683           63 LRYFHWHGCPLKS--LPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQ  139 (256)
Q Consensus        63 L~~L~ls~n~l~~--lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~  139 (256)
                      |++|+++++.+..  ++.-+ .+++|++|++++|.+...                        .+..++.+++|++|+++
T Consensus        48 L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~------------------------~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          48 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP------------------------IVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH------------------------HHHHHTTCTTCSEEECT
T ss_pred             CCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcH------------------------HHHHHhcCCCCcCcccc
Confidence            7777777766542  33334 677777777777766431                        13445778889999998


Q ss_pred             C-CCCc--cccccccCCCCCCEEeeccCcCCcc--cCCC----CCCCcEEeccCcc
Q 043683          140 K-NNFE--RIPESVIQLSKLGRLCLRYWERLQS--LPKL----PCKLHELDAHHCT  186 (256)
Q Consensus       140 ~-n~l~--~lp~~i~~l~~L~~L~l~~~~~l~~--lp~~----l~~L~~L~l~~~~  186 (256)
                      + +.++  .+..-...+++|++|++++|..+..  +...    .++|+.|++++|.
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            5 5676  3443456788999999998866532  1111    4689999998763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.6e-06  Score=66.16  Aligned_cols=37  Identities=27%  Similarity=0.201  Sum_probs=17.0

Q ss_pred             CCCCCCcEEEccCCCCccccc-cccCCCCCCEEeeccC
Q 043683          128 GQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLCLRYW  164 (256)
Q Consensus       128 ~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~  164 (256)
                      ..+++|+.|++++|.++.+++ ......+|+.|++++|
T Consensus        88 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~N  125 (162)
T d1koha1          88 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN  125 (162)
T ss_dssp             HHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTS
T ss_pred             hhCCcccccccccCccccchhhhhhhccccceeecCCC
Confidence            344555555555555555443 1122234455555553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=9.2e-06  Score=61.73  Aligned_cols=63  Identities=25%  Similarity=0.246  Sum_probs=50.5

Q ss_pred             CCCCCCcEEEccCCCCcccc---ccccCCCCCCEEeeccCcCCcccCCC----CCCCcEEeccCccccccc
Q 043683          128 GQLSSLGKLDLQKNNFERIP---ESVIQLSKLGRLCLRYWERLQSLPKL----PCKLHELDAHHCTALESL  191 (256)
Q Consensus       128 ~~l~~L~~L~l~~n~l~~lp---~~i~~l~~L~~L~l~~~~~l~~lp~~----l~~L~~L~l~~~~~l~~~  191 (256)
                      ..+++|++|++++|+++.++   ..+..+++|+.|++++ |.++.+++.    ...|+.|++++|+.....
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCCcCcCc
Confidence            45788999999999998765   3567899999999998 668888764    457899999998754433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.33  E-value=0.00014  Score=61.13  Aligned_cols=35  Identities=11%  Similarity=0.091  Sum_probs=25.0

Q ss_pred             hhhhhccCCCCCc-----cCCcc-ccCCccEEeCcCCcchh
Q 043683           63 LRYFHWHGCPLKS-----LPSNI-HLEKLVLLEMPHSNIQQ   97 (256)
Q Consensus        63 L~~L~ls~n~l~~-----lp~~~-~l~~L~~L~L~~n~l~~   97 (256)
                      |+.|++++|.++.     +...+ ..++|++|++++|.+..
T Consensus        95 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~  135 (344)
T d2ca6a1          95 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP  135 (344)
T ss_dssp             CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred             cccccccccccccccccchhhhhcccccchheecccccccc
Confidence            8888888887654     22333 56888888888887753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00025  Score=60.69  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=51.4

Q ss_pred             hhhhhccCCCCCc-----cCCcc-ccCCccEEeCcCCcchhh-HHHHHHhcccCCCCchhhccCccccccccC-CCCCCc
Q 043683           63 LRYFHWHGCPLKS-----LPSNI-HLEKLVLLEMPHSNIQQL-LDSVRGILTRTPNTPLGQHLNTLVLPENIG-QLSSLG  134 (256)
Q Consensus        63 L~~L~ls~n~l~~-----lp~~~-~l~~L~~L~L~~n~l~~l-~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~-~l~~L~  134 (256)
                      +++|+|++|.++.     ++..+ ..++|++|+|++|.++.. +..+.                     ..+. ...+|+
T Consensus        29 l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~---------------------~~l~~~~~~L~   87 (460)
T d1z7xw1          29 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL---------------------QGLQTPSCKIQ   87 (460)
T ss_dssp             CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH---------------------HTTCSTTCCCC
T ss_pred             CCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHH---------------------HHHhcCCCCCC
Confidence            7888888887653     34445 677888888888887642 11111                     1111 224677


Q ss_pred             EEEccCCCCcc-----ccccccCCCCCCEEeeccC
Q 043683          135 KLDLQKNNFER-----IPESVIQLSKLGRLCLRYW  164 (256)
Q Consensus       135 ~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~  164 (256)
                      +|++++|+++.     ++..+..+++|++|++++|
T Consensus        88 ~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          88 KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             EEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             EEECCCCCccccccccccchhhccccccccccccc
Confidence            88888777753     3455667778888887764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.11  E-value=0.00037  Score=58.43  Aligned_cols=104  Identities=22%  Similarity=0.229  Sum_probs=59.7

Q ss_pred             hhhhhccCCCCCc-----cCCcc-ccCCccEEeCcCCcchhhHHHHHHhcccCCCCchhhccCccccccccCCCCCCcEE
Q 043683           63 LRYFHWHGCPLKS-----LPSNI-HLEKLVLLEMPHSNIQQLLDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKL  136 (256)
Q Consensus        63 L~~L~ls~n~l~~-----lp~~~-~l~~L~~L~L~~n~l~~l~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L  136 (256)
                      |+.+.+++|.++.     +...+ ..+.|++|++++|.+...  +...                 .+...+...++|+.|
T Consensus       160 L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~--g~~~-----------------~l~~~l~~~~~L~~L  220 (344)
T d2ca6a1         160 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE--GIEH-----------------LLLEGLAYCQELKVL  220 (344)
T ss_dssp             CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH--HHHH-----------------HHHTTGGGCTTCCEE
T ss_pred             cceeecccccccccccccccchhhhhhhhccccccccccccc--cccc-----------------chhhhhcchhhhccc
Confidence            6777777776643     22233 567888888888877542  0000                 001223456677777


Q ss_pred             EccCCCCcc-----ccccccCCCCCCEEeeccCcCCccc---------CCC-CCCCcEEeccCcc
Q 043683          137 DLQKNNFER-----IPESVIQLSKLGRLCLRYWERLQSL---------PKL-PCKLHELDAHHCT  186 (256)
Q Consensus       137 ~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~l---------p~~-l~~L~~L~l~~~~  186 (256)
                      ++++|.++.     +...+..+++|++|++++|. ++.-         ... ..+|++|++++|.
T Consensus       221 ~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         221 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             ccccccccccccccccccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            777777642     33455667777777777754 2221         111 2457777777764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=6e-05  Score=64.81  Aligned_cols=103  Identities=16%  Similarity=0.206  Sum_probs=57.9

Q ss_pred             CCccEEeCcCCcchhh-HHHHHHhcccCCCCchhhc-cCcc---ccccccCCCCCCcEEEccCCCCcc-----cccccc-
Q 043683           83 EKLVLLEMPHSNIQQL-LDSVRGILTRTPNTPLGQH-LNTL---VLPENIGQLSSLGKLDLQKNNFER-----IPESVI-  151 (256)
Q Consensus        83 ~~L~~L~L~~n~l~~l-~~~L~~Ll~~lp~~~l~~~-L~~L---~lp~~~~~l~~L~~L~l~~n~l~~-----lp~~i~-  151 (256)
                      .+|++||+++|+++.. |..+-..++.+..+.+.+| ++.-   .+...+...++|++|+|++|+++.     +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            3688999999998764 2221111222222222222 1111   234455677888888888888753     222222 


Q ss_pred             CCCCCCEEeeccCcCCcc-----cCCC---CCCCcEEeccCcc
Q 043683          152 QLSKLGRLCLRYWERLQS-----LPKL---PCKLHELDAHHCT  186 (256)
Q Consensus       152 ~l~~L~~L~l~~~~~l~~-----lp~~---l~~L~~L~l~~~~  186 (256)
                      ...+|+.|++++|. ++.     ++..   .++|++|++++|.
T Consensus        82 ~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          82 PSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             CCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence            23478888888764 432     2221   5678888888765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.22  E-value=0.018  Score=42.77  Aligned_cols=34  Identities=15%  Similarity=0.129  Sum_probs=19.5

Q ss_pred             CCCCcEEEccCCCCcc-----ccccccCCCCCCEEeecc
Q 043683          130 LSSLGKLDLQKNNFER-----IPESVIQLSKLGRLCLRY  163 (256)
Q Consensus       130 l~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~  163 (256)
                      .+.|++|++++|.++.     +-..+..-++|++|++++
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  109 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCC
Confidence            3456666666666652     122445556677777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.89  E-value=0.0075  Score=45.07  Aligned_cols=14  Identities=14%  Similarity=0.235  Sum_probs=6.5

Q ss_pred             CCccEEeCcCCcch
Q 043683           83 EKLVLLEMPHSNIQ   96 (256)
Q Consensus        83 ~~L~~L~L~~n~l~   96 (256)
                      +.|++|++++|.+.
T Consensus        72 ~~L~~L~L~~n~i~   85 (167)
T d1pgva_          72 PSLRVLNVESNFLT   85 (167)
T ss_dssp             SSCCEEECCSSBCC
T ss_pred             ccccceeeehhhcc
Confidence            44444444444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=87.90  E-value=0.24  Score=36.08  Aligned_cols=84  Identities=11%  Similarity=0.097  Sum_probs=47.5

Q ss_pred             ccCCccEEeCcCCcchhh-HHHHHHhcccCCCCchhhccCccccccccCCCCCCcEEEccCCCCc-----cccccccCCC
Q 043683           81 HLEKLVLLEMPHSNIQQL-LDSVRGILTRTPNTPLGQHLNTLVLPENIGQLSSLGKLDLQKNNFE-----RIPESVIQLS  154 (256)
Q Consensus        81 ~l~~L~~L~L~~n~l~~l-~~~L~~Ll~~lp~~~l~~~L~~L~lp~~~~~l~~L~~L~l~~n~l~-----~lp~~i~~l~  154 (256)
                      ..++|++|++++|.+... ...+..                     .+...++++.++++++.+.     .+-..+...+
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~---------------------~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~  102 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAE---------------------MLKVNNTLKSLNVESNFISGSGILALVEALQSNT  102 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHH---------------------HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCS
T ss_pred             cCCccCeeeccCCcccHHHHHHHHH---------------------HHhhcccchhhhhccccccchhHHHHHHHHHhCc
Confidence            356788888888877543 111111                     1233456788888877764     2334566777


Q ss_pred             CCCEEeeccC-cCCcc-----cCCC---CCCCcEEeccCc
Q 043683          155 KLGRLCLRYW-ERLQS-----LPKL---PCKLHELDAHHC  185 (256)
Q Consensus       155 ~L~~L~l~~~-~~l~~-----lp~~---l~~L~~L~l~~~  185 (256)
                      +|+.++++.+ +.++.     +...   .++|+.|+++.+
T Consensus       103 ~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         103 SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             cccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            7877666532 22222     1111   567888887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=86.65  E-value=0.18  Score=36.80  Aligned_cols=37  Identities=11%  Similarity=0.037  Sum_probs=21.7

Q ss_pred             CCCCCCcEEEccCCCCcc-----ccccccCCCCCCEEeeccC
Q 043683          128 GQLSSLGKLDLQKNNFER-----IPESVIQLSKLGRLCLRYW  164 (256)
Q Consensus       128 ~~l~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~  164 (256)
                      ...++|++|++++|.++.     +-..+...++++.+++++|
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence            445667777777666642     2224445566777776654