Citrus Sinensis ID: 043728


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------
MAKFTTTFALLFAFFILFAAFDVPMAEAKVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC
ccHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccEEEEEccccccHHHHHHHccccccccccccccEEEEEEccc
ccHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccccccccccHHHHHHHHccccccccccccccEEEEEccc
MAKFTTTFALLFAFFILFAAFDVPMAEAKVCQLRsktwsglclntgncsrqckqqedarfgachrqgigfacfcyfkc
MAKFTTTFALLFAFFILFAAFDVPMAEAKVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC
MAKftttfallfaffilfaafDVPMAEAKVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC
***FTTTFALLFAFFILFAAFDVPMAEAKVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFK*
***FTTTFALLFAFFILFAAFDVPMAEAKVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC
MAKFTTTFALLFAFFILFAAFDVPMAEAKVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC
*AKFTTTFALLFAFFILFAAFDVPMAEAKVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAKFTTTFALLFAFFILFAAFDVPMAEAKVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query78 2.2.26 [Sep-21-2011]
Q3931379 Defensin-like protein 3 O N/A no 1.0 0.987 0.468 1e-13
P6924180 Defensin-like protein 1 O N/A no 1.0 0.975 0.5 1e-13
O2433279 Defensin-like protein 3 O N/A no 1.0 0.987 0.468 1e-13
P8278778 Defensin-like protein 19 yes no 1.0 1.0 0.474 3e-13
Q9FI2380 Defensin-like protein 16 no no 1.0 0.975 0.462 1e-12
P3023080 Defensin-like protein 2 O N/A no 1.0 0.975 0.475 1e-12
O2433180 Defensin-like protein 4 O N/A no 1.0 0.975 0.475 3e-12
O8099480 Putative defensin-like pr no no 1.0 0.975 0.437 7e-12
Q9FI2280 Defensin-like protein 17 no no 1.0 0.975 0.45 3e-11
O8099580 Defensin-like protein 14 no no 1.0 0.975 0.45 3e-11
>sp|Q39313|DEF3_BRANA Defensin-like protein 3 OS=Brassica napus GN=AFP3 PE=3 SV=1 Back     alignment and function desciption
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 1/79 (1%)

Query: 1  MAKFTTTFALLFAFFILFAAFDVP-MAEAKVCQLRSKTWSGLCLNTGNCSRQCKQQEDAR 59
          MAKF +   LLFA  ++FAAF+ P M EAK+C+  S TWSG+C N   C  QC + E A+
Sbjct: 1  MAKFASIITLLFAALVVFAAFEAPTMVEAKLCERSSGTWSGVCGNNNACKNQCIRLEGAQ 60

Query: 60 FGACHRQGIGFACFCYFKC 78
           G+C+       C CYF C
Sbjct: 61 HGSCNYVFPAHKCICYFPC 79




Possesses antifungal activity sensitive to inorganic cations.
Brassica napus (taxid: 3708)
>sp|P69241|DEF1_RAPSA Defensin-like protein 1 OS=Raphanus sativus GN=AFP1 PE=1 SV=1 Back     alignment and function description
>sp|O24332|DEF3_RAPSA Defensin-like protein 3 OS=Raphanus sativus GN=AFP3 PE=3 SV=1 Back     alignment and function description
>sp|P82787|DEF19_ARATH Defensin-like protein 19 OS=Arabidopsis thaliana GN=PDF1.4 PE=3 SV=2 Back     alignment and function description
>sp|Q9FI23|DEF16_ARATH Defensin-like protein 16 OS=Arabidopsis thaliana GN=PDF1.2A PE=2 SV=1 Back     alignment and function description
>sp|P30230|DEF2_RAPSA Defensin-like protein 2 OS=Raphanus sativus GN=AFP2 PE=1 SV=4 Back     alignment and function description
>sp|O24331|DEF4_RAPSA Defensin-like protein 4 OS=Raphanus sativus GN=AFP4 PE=3 SV=1 Back     alignment and function description
>sp|O80994|DEF15_ARATH Putative defensin-like protein 15 OS=Arabidopsis thaliana GN=PDF1.2B PE=3 SV=1 Back     alignment and function description
>sp|Q9FI22|DEF17_ARATH Defensin-like protein 17 OS=Arabidopsis thaliana GN=PDF1.2C PE=2 SV=1 Back     alignment and function description
>sp|O80995|DEF14_ARATH Defensin-like protein 14 OS=Arabidopsis thaliana GN=PDF1.3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query78
388514949136 unknown [Medicago truncatula] 0.948 0.544 0.597 2e-16
22545821382 PREDICTED: defensin-like protein 19 [Vit 0.961 0.914 0.513 5e-13
1138664079 RecName: Full=Defensin-like protein 3; A 1.0 0.987 0.468 5e-12
25553871279 Low-molecular-weight cysteine-rich prote 0.730 0.721 0.631 5e-12
5979899280 RecName: Full=Defensin-like protein 1; A 1.0 0.975 0.5 6e-12
1138662879 RecName: Full=Defensin-like protein 3; A 1.0 0.987 0.468 6e-12
29780520078 hypothetical protein ARALYDRAFT_915784 [ 1.0 1.0 0.448 6e-12
6282300980 antifungal protein [Sinapis alba] 1.0 0.975 0.487 6e-12
29785034878 low-molecular-weight cysteine-rich 78 [A 1.0 1.0 0.487 7e-12
24272402180 defensin [Orychophragmus violaceus] 1.0 0.975 0.5 1e-11
>gi|388514949|gb|AFK45536.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 52/77 (67%), Gaps = 3/77 (3%)

Query: 2  AKFTTTFALLFAFFILFAAFDVPMAEAKVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFG 61
          +KF T F  +   F+  +  +V   EAK+CQ RS TWSG CLNTGNC RQC   E A FG
Sbjct: 6  SKFYTIFIFVCLAFLFISTSEV---EAKLCQKRSTTWSGPCLNTGNCKRQCINVEHATFG 62

Query: 62 ACHRQGIGFACFCYFKC 78
          ACHRQG GFACFCY KC
Sbjct: 63 ACHRQGFGFACFCYKKC 79




Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458213|ref|XP_002281189.1| PREDICTED: defensin-like protein 19 [Vitis vinifera] gi|147772111|emb|CAN64556.1| hypothetical protein VITISV_040160 [Vitis vinifera] Back     alignment and taxonomy information
>gi|11386640|sp|Q39313.1|DEF3_BRANA RecName: Full=Defensin-like protein 3; AltName: Full=Cysteine-rich antifungal protein 3; Short=AFP3; Flags: Precursor gi|1399230|gb|AAB03224.1| antifungal protein [Brassica napus] gi|60686419|gb|AAX35338.1| defensin 1.2 [Brassica napus] gi|151382079|gb|ABS11037.1| defensin [Brassica oleracea var. gemmifera] gi|218436744|dbj|BAH03381.1| plant defensin [Brassica rapa subsp. chinensis] gi|244539519|dbj|BAH82667.1| defensin 1.2 [Brassica rapa subsp. chinensis] Back     alignment and taxonomy information
>gi|255538712|ref|XP_002510421.1| Low-molecular-weight cysteine-rich protein LCR78 precursor, putative [Ricinus communis] gi|223551122|gb|EEF52608.1| Low-molecular-weight cysteine-rich protein LCR78 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|59798992|sp|P69241.1|DEF1_RAPSA RecName: Full=Defensin-like protein 1; AltName: Full=Cysteine-rich antifungal protein 1; Short=AFP1; Flags: Precursor gi|609322|gb|AAA69541.1| antifungal protein 1 preprotein [Raphanus sativus] gi|115529964|gb|ABJ09663.1| antifungal rafp1 [Raphanus sativus] Back     alignment and taxonomy information
>gi|11386628|sp|O24332.1|DEF3_RAPSA RecName: Full=Defensin-like protein 3; AltName: Full=Cysteine-rich antifungal protein 3; Short=AFP3; Flags: Precursor gi|1655685|emb|CAA65984.1| antifungal protein 3 [Raphanus sativus] Back     alignment and taxonomy information
>gi|297805200|ref|XP_002870484.1| hypothetical protein ARALYDRAFT_915784 [Arabidopsis lyrata subsp. lyrata] gi|297316320|gb|EFH46743.1| hypothetical protein ARALYDRAFT_915784 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|62823009|gb|AAY15221.1| antifungal protein [Sinapis alba] Back     alignment and taxonomy information
>gi|297850348|ref|XP_002893055.1| low-molecular-weight cysteine-rich 78 [Arabidopsis lyrata subsp. lyrata] gi|297338897|gb|EFH69314.1| low-molecular-weight cysteine-rich 78 [Arabidopsis lyrata subsp. lyrata] gi|410066987|emb|CCN97876.1| defensin [Arabidopsis halleri subsp. halleri] Back     alignment and taxonomy information
>gi|242724021|gb|ACS93640.1| defensin [Orychophragmus violaceus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query78
TAIR|locus:201318478 PDF1.4 "AT1G19610" [Arabidopsi 0.666 0.666 0.596 8.8e-15
TAIR|locus:220436580 LCR67 "AT1G75830" [Arabidopsis 1.0 0.975 0.362 3.6e-09
TAIR|locus:205744880 PDF1.3 "AT2G26010" [Arabidopsi 1.0 0.975 0.35 7.6e-09
UNIPROTKB|P8697250 P86972 "Defensin D1" [Nigella 0.641 1.0 0.42 1.6e-08
TAIR|locus:205743780 PDF1.2b "AT2G26020" [Arabidops 1.0 0.975 0.35 2e-08
TAIR|locus:216342180 PDF1.2 "AT5G44420" [Arabidopsi 1.0 0.975 0.35 2e-08
UNIPROTKB|P8697350 P86973 "Defensin D2" [Nigella 0.641 1.0 0.42 2.6e-08
TAIR|locus:216343180 PDF1.2c "AT5G44430" [Arabidops 1.0 0.975 0.337 4.2e-08
TAIR|locus:100902318280 LCR73 "low-molecular-weight cy 0.730 0.712 0.350 5.5e-06
TAIR|locus:201105580 PDF1.5 "AT1G55010" [Arabidopsi 0.679 0.662 0.339 9e-06
TAIR|locus:2013184 PDF1.4 "AT1G19610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 31/52 (59%), Positives = 36/52 (69%)

Query:    27 EAKVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC 78
             E ++C+ RSKTW+G C NT  C  QCK+ E A  GACH Q  GFACFCYF C
Sbjct:    27 EGRICERRSKTWTGFCGNTRGCDSQCKRWERASHGACHAQFPGFACFCYFNC 78




GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0006952 "defense response" evidence=IEA;ISS
TAIR|locus:2204365 LCR67 "AT1G75830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057448 PDF1.3 "AT2G26010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P86972 P86972 "Defensin D1" [Nigella sativa (taxid:555479)] Back     alignment and assigned GO terms
TAIR|locus:2057437 PDF1.2b "AT2G26020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163421 PDF1.2 "AT5G44420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P86973 P86973 "Defensin D2" [Nigella sativa (taxid:555479)] Back     alignment and assigned GO terms
TAIR|locus:2163431 PDF1.2c "AT5G44430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1009023182 LCR73 "low-molecular-weight cysteine-rich 73" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011055 PDF1.5 "AT1G55010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P82787DEF19_ARATHNo assigned EC number0.47431.01.0yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query78
pfam0030447 pfam00304, Gamma-thionin, Gamma-thionin family 9e-08
>gnl|CDD|109365 pfam00304, Gamma-thionin, Gamma-thionin family Back     alignment and domain information
 Score = 43.4 bits (103), Expect = 9e-08
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 29 KVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC 78
          + C+  S T+ G C +  NC++ C+ +  A  G C   G    CFC   C
Sbjct: 1  RTCESPSGTFKGPCFSDSNCAKVCRNEGFAG-GHCS--GFRRRCFCTKPC 47


Length = 47

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 78
PF0030447 Gamma-thionin: Gamma-thionin family; InterPro: IPR 99.69
smart0050545 Knot1 Knottins. Knottins, representing plant lecti 99.0
cd0010733 Knot1 The "knottin" fold is stable cysteine-rich s 98.69
PF1086890 DUF2667: Protein of unknown function (DUF2667); In 98.28
PF0109734 Defensin_2: Arthropod defensin; InterPro: IPR00154 97.14
PF0053754 Toxin_3: Scorpion toxin-like domain ; InterPro: IP 96.66
PF0712754 Nodulin_late: Late nodulin protein; InterPro: IPR0 96.33
PF0733358 SLR1-BP: S locus-related glycoprotein 1 binding po 95.79
PF0045132 Toxin_2: Scorpion short toxin, BmKK2; InterPro: IP 95.45
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 92.81
PF0687667 SCRL: Plant self-incompatibility response (SCRL) p 89.26
PF1486656 Toxin_38: Potassium channel toxin 89.04
PF0808641 Toxin_17: Ergtoxin family; InterPro: IPR012622 The 85.74
PF0811937 Toxin_31: Scorpion acidic alpha-KTx toxin family; 84.07
>PF00304 Gamma-thionin: Gamma-thionin family; InterPro: IPR008176 The following small plant proteins are evolutionary related: Gamma-thionins from Triticum aestivum (Wheat) endosperm (gamma-purothionins) and gamma-hordothionins from Hordeum vulgare(Barley) are toxic to animal cells and inhibit protein synthesis in cell free systems [] Back     alignment and domain information
Probab=99.69  E-value=2.5e-18  Score=93.62  Aligned_cols=47  Identities=36%  Similarity=0.771  Sum_probs=41.3

Q ss_pred             hhhhhcCCcceeecCCccccHHHhcccCCCCCceeecCCCCcceEeecCC
Q 043728           29 KVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC   78 (78)
Q Consensus        29 ~~C~~~s~~~~G~C~~~~~C~~~C~~~eg~~~G~C~~~~~~~~C~C~~~C   78 (78)
                      |+|+++|++|+|+|+++++|+++|++ ||+.+|+|++  +.++|+|++||
T Consensus         1 k~C~~~S~tf~G~C~~~~~C~~~C~~-eg~~~G~C~~--~~~~C~C~~~C   47 (47)
T PF00304_consen    1 KTCERPSGTFKGLCFSDSNCANVCIN-EGFTGGKCSG--PLRRCFCTKPC   47 (47)
T ss_dssp             EEEEEESSSS-SS-SSHHHHHHHHHH-CTSSEEEEET--TTTEEEEEEEE
T ss_pred             CcccccCCCceeECCCcchhhHHhcc-CCCCCCEeCC--CCceEEEeCcC
Confidence            57999999999999999999999998 9999999996  34899999997



A flower-specific thionin (FST) from Nicotiana tabacum (Common Tobacco)[]. Antifungal proteins (AFP) from the seeds of Brassicaceae species such as radish, mustard, turnip and Arabidopsis thaliana (Thale Cress)[]. Inhibitors of insect alpha-amylases from sorghum []. Probable protease inhibitor P322 from Solanum tuberosum (Potato). A germination-related protein from Vigna unguiculata (Cowpea) []. Anther-specific protein SF18 from sunflower. SF18 is a protein that contains a gamma-thionin domain at its N terminus and a proline-rich C-terminal domain. Glycine max (Soybean) sulphur-rich protein SE60 []. Vicia faba (Broad bean) antibacterial peptides fabatin-1 and -2. In their mature form, these proteins generally consist of about 45 to 50 amino-acid residues. As shown in the following schematic representation, these peptides contain eight conserved cysteines involved in disulphide bonds. +-------------------------------------------+ | +-------------------+ | | | | | xxCxxxxxxxxxxCxxxxxCxxxCxxxxxxxxxCxxxxxxCxCxxxC | | | | +---|----------------+ | +------------------+ 'C': conserved cysteine involved in a disulphide bond. The folded structure of Gamma-purothionin is characterised by a well-defined 3-stranded anti-parallel beta-sheet and a short alpha-helix []. Three disulphide bridges are located in the hydrophobic core between the helix and sheet, forming a cysteine-stabilised alpha-helical motif. This structure differs from that of the plant alpha- and beta- thionins, but is analogous to scorpion toxins and insect defensins.; GO: 0006952 defense response; PDB: 4AB0_A 4AAZ_B 1N4N_A 2KPY_A 1JKZ_A 1AYJ_A 1GPT_A 1BK8_A 2GL1_A 1GPS_A ....

>smart00505 Knot1 Knottins Back     alignment and domain information
>cd00107 Knot1 The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the macrocycle made by two other disulfide bridges and the connecting backbone segments Back     alignment and domain information
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana Back     alignment and domain information
>PF01097 Defensin_2: Arthropod defensin; InterPro: IPR001542 Arthropod defensins are a family of insect and scorpion cysteine-rich antibacterial peptides, primarily active against Gram-positive bacteria [, , , , ] Back     alignment and domain information
>PF00537 Toxin_3: Scorpion toxin-like domain ; InterPro: IPR002061 Scorpion toxins, which may be mammal or insect specific, bind to sodium channels, inhibiting the inactivation of activated channels and blocking neuronal transmission Back     alignment and domain information
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein Back     alignment and domain information
>PF07333 SLR1-BP: S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP); InterPro: IPR010851 This entry consists of a number of cysteine rich SLR1 binding pollen coat like proteins Back     alignment and domain information
>PF00451 Toxin_2: Scorpion short toxin, BmKK2; InterPro: IPR001947 Scorpion venoms contain a variety of peptides toxic to mammals, insects and crustaceans Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information
>PF06876 SCRL: Plant self-incompatibility response (SCRL) protein; InterPro: IPR010682 This family consists of several plant self-incompatibility response (SCRL) proteins Back     alignment and domain information
>PF14866 Toxin_38: Potassium channel toxin Back     alignment and domain information
>PF08086 Toxin_17: Ergtoxin family; InterPro: IPR012622 The Ergtoxin (ErgTx) family is a class of peptides from scorpion venom that specifically block ERG (ether-a-go-go-related gene) K+ channels of the nerve, heart and endocrine cells [, , ] Back     alignment and domain information
>PF08119 Toxin_31: Scorpion acidic alpha-KTx toxin family; InterPro: IPR012635 This entry represents proteins that are acidic alpha-KTx short chain scorpion toxins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query78
1bk8_A50 Determination Of The Three-Dimensional Solution Str 8e-08
1ayj_A51 Determination Of The Three-Dimensional Solution Str 5e-06
>pdb|1BK8|A Chain A, Determination Of The Three-Dimensional Solution Structure Of Aesculus Hippocastanum Antimicrobial Protein 1 (Ah- Amp1) By 1h Nmr, 25 Structures Length = 50 Back     alignment and structure

Iteration: 1

Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 23/44 (52%), Positives = 30/44 (68%) Query: 35 SKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC 78 S+TWSG C NT +C +QC+ E A GACH++ + CFCYF C Sbjct: 7 SQTWSGNCGNTAHCDKQCQDWEKASHGACHKRENHWKCFCYFNC 50
>pdb|1AYJ|A Chain A, Determination Of The Three-Dimensional Solution Structure Of Raphanus Sativus Antifungal Protein 1 (Rs-Afp1) By 1h Nmr, 20 Structures Length = 51 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query78
2kpy_A108 Major pollen allergen ART V 1; defensin-like, poly 4e-17
1ayj_A51 RS-AFP1, antifungal protein 1; fungicide, plant de 3e-13
1bk8_A50 AH-AMP1, antimicrobial protein 1; plant defensin, 2e-12
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108 Back     alignment and structure
 Score = 68.7 bits (167), Expect = 4e-17
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 26 AEAKVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGF-ACFCYFKC 78
          A +K+C+  SKT+SG C N   C ++C + E A+ GACH++  G  +CFCYF C
Sbjct: 1  AGSKLCEKTSKTYSGKCDNK-KCDKKCIEWEKAQHGACHKREAGKESCFCYFDC 53


>1ayj_A RS-AFP1, antifungal protein 1; fungicide, plant defensin, cysteine-stabilized ALFA/beta motif; HET: PCA; NMR {Raphanus sativus var} SCOP: g.3.7.5 Length = 51 Back     alignment and structure
>1bk8_A AH-AMP1, antimicrobial protein 1; plant defensin, cysteine-stabilized ALFA/ beta motif; NMR {Aesculus hippocastanum} SCOP: g.3.7.5 Length = 50 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query78
2ksk_A71 Sugarcane defensin 5; csalphabeta motif, antimicro 99.84
1ayj_A51 RS-AFP1, antifungal protein 1; fungicide, plant de 99.81
1bk8_A50 AH-AMP1, antimicrobial protein 1; plant defensin, 99.77
3psm_A47 Defensin, SPE10; dimer, antimicrobial protein; 0.9 99.76
2kpy_A108 Major pollen allergen ART V 1; defensin-like, poly 99.76
1n4n_A47 PHD1, floral defensin-like protein 1; cysteine-sta 99.75
1mr4_A47 Nicotiana alata plant defensin 1 (NAD1); cysteine- 99.75
1gps_A47 Gamma-1-P thionin; plant toxin; NMR {Triticum turg 99.74
1jkz_A46 PSD1, defense-related peptide 1; plant defensin, C 99.74
2lr3_A47 Defensin; fungal disease, antifungal agent, antifu 99.72
1ti5_A46 Plant defensin; insecticidal activity, MUNG bean, 99.71
1myn_A44 Drosomycin; insect immunity, antifungal, csalpha-b 99.15
1i2u_A44 Defensin heliomicin; alpha-beta protein, CSAB moti 98.36
1jxc_A68 Putative trypsin inhibitor ATTI-2; chymotrypsin in 97.44
2lr5_A38 Micasin; antimicrobial protein; NMR {Arthroderma o 96.25
1zfu_A40 Plectasin; defensin,antimicrobial peptide,cysteine 97.11
1fjn_A39 Defensin MGD-1; cystine stabilized alpha-beta moti 96.99
2k9o_A36 VM24 scorpion toxin; ALFA/beta scaffold, beta shee 96.98
1wmt_A41 ISTX; neurotoxin, potassium channel blocker, solut 96.93
1c49_A35 Toxin K-beta; scorpion toxin, potassium channels b 96.93
2b68_A43 Defensin; antibacterial peptide, cysteine-rich pep 96.91
1ica_A40 Insect defensin A; antibacterial protein; NMR {Pro 96.8
1brz_A54 Brazzein; sweet protein, cysteine-stabilized alpha 96.8
2e3g_A40 Defensin, mutant DEF-DAA; insect defensin, CSAB mo 96.79
1wt7_A41 BUTX-MTX; maurotoxin, butantoxin, scorpion toxin, 96.79
2e3e_A45 Defensin, mutant DEF-BBB; insect defensin, CSAB mo 96.75
1quz_A35 HSTX1 toxin; scorpion toxin, alpha beta, molecular 96.57
1aho_A64 Toxin II; scorpion, AB initio phasing, neurotoxin; 96.55
1kv0_A66 BMK M7, BMKM7, alpha-like toxin BMK-M7; non-prolyl 96.53
2yeo_A65 Alpha-insect toxin lqhait; defense response; HET: 96.52
1snb_A64 Neurotoxin BMK M8; sodium channel inhibitor, scorp 96.48
1dq7_A64 Neurotoxin; 2.20A {Mesobuthus tamulus} SCOP: g.3.7 96.48
1nra_A63 Neurotoxin V, CSE-V; NMR {Centruroides sculpturatu 96.46
1qky_A38 PI7, toxin 7 from pandinus imperator; neurotoxin; 96.46
1n8m_A38 PI4, potassium channel blocking toxin 4; potassium 96.36
1t1t_A63 Kurtoxin, KTX; cysteine stabilized alpha-beta; NMR 96.34
1wz5_A35 Potassium channel blocking toxin 1; ionic channel 96.31
1i6f_A60 Neurotoxin V-5, CSE-V5; scorpion, sodium channel, 96.3
1c55_A40 Butantoxin; structure; NMR {Tityus serrulatus} SCO 96.26
2i61_A62 Insect toxin 2; scorpion toxin, depressant, anti-i 96.16
1j5j_A36 BEKM-1 toxin; alpha-beta motif, cysteine-knot moti 96.15
1bmr_A68 LQH III alpha-like toxin; scorpion toxin, sodium c 96.11
2axk_A38 Discrepin; scorpion toxin, A-current, K+-channel,; 96.04
1cmr_A31 Charybdotoxin, alpha chimera; antagonist of nicoti 95.99
1hly_A39 Hongotoxin 1; scorpion, centruroides limbatus HGTX 95.97
1hp2_A37 Tityustoxin K alpha; K+ channel, scorpion toxin, a 95.96
1big_A37 Toxin BMTX1; scorpion, neurotoxin, structure, larg 95.94
2ln4_A44 Coprisin; antimicrobial protein, defensin-like pep 95.93
2koz_A33 Nasonin-1; alpha/beta structure, disulfide bonds, 95.87
1bah_A37 Charybdotoxin, chabii; neurotoxin, potassium chann 95.84
1agt_A38 Agitoxin 2; potassium channel blocker, neurotoxin; 95.77
1m2s_A37 Toxin BMTX3, neurotoxin TX3; alpha/beta scaffold; 95.72
1npi_A61 Toxin VII, TSTX-VII; xcitatory neurotoxin; 1.16A { 95.61
1b3c_A64 Protein (neurotoxin CSE-I); scorpion neurotoxin, N 95.58
1t0z_A72 Insect neurotoxin; alpha-beta; 2.60A {Mesobuthus m 95.54
2sn3_A65 Scorpion neurotoxin (variant 3); 1.20A {Centruroid 95.51
1pe4_A67 Neurotoxin CN11, CN12; scorpion toxin, sodium chan 95.49
2ljm_A82 CSS II, cssii, beta-mammal toxin CSS2; CS ALFA bet 95.34
2yc1_C66 Beta-mammal toxin CN2; immune system-toxin complex 95.13
2ddl_A33 Leiurotoxin, LEI4P; scorpion toxin analog; NMR {Sy 94.81
1tsk_A35 TS KAPA; scorpion, toxin, potassium channel, neuro 94.68
1pjv_A32 Cobatoxin 1, COTX1, GTIX; scorpion toxin, centuroi 94.55
1r1g_A31 Neurotoxin BMK37, BMBKTTX1; siras from S atoms, sc 94.51
1bcg_A77 Toxin BJXTR-IT; excitatory neurotoxin; 2.10A {Hott 94.5
2lt8_A42 Eurocin; A/B-fold, cysteine stabilised, antimicrob 88.76
1ne5_A42 Ergtoxin, cnerg1, ERGTX; alpha-helix, triple-stran 86.85
1pvz_A31 K+ toxin-like peptide; alpha/beta scaffold; NMR {M 85.89
2k35_A60 Hydramacin-1; antimicrobial protein; NMR {Hydra} 80.85
>2ksk_A Sugarcane defensin 5; csalphabeta motif, antimicrobial protein; NMR {Saccharum officinarum} Back     alignment and structure
Probab=99.84  E-value=3.3e-22  Score=116.50  Aligned_cols=54  Identities=26%  Similarity=0.635  Sum_probs=50.3

Q ss_pred             hhhhhhhhhcCCcceeecCCccccHHHhccc-CCCCCceeecCCCCcceEeecCC
Q 043728           25 MAEAKVCQLRSKTWSGLCLNTGNCSRQCKQQ-EDARFGACHRQGIGFACFCYFKC   78 (78)
Q Consensus        25 ~~ea~~C~~~s~~~~G~C~~~~~C~~~C~~~-eg~~~G~C~~~~~~~~C~C~~~C   78 (78)
                      ++||++|+++|++|+|+|+++.+|+++|+++ |||.+|+|++++|.++|+||++|
T Consensus         3 ~aEAr~C~s~S~~fkG~C~~~~nC~~vC~~~~Egf~~G~C~g~~~~rrC~Ctk~C   57 (71)
T 2ksk_A            3 PTPTPICKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC   57 (71)
T ss_dssp             CCSSCCEEEECSSSCSSCCCHHHHHHHHHHHCSSCCEEEEECCSSSCEEEEEECC
T ss_pred             cccchhhhccCCCCeEEcCCCccHHHhccCcCCCCCCCCcCCCCCCceEEEECCc
Confidence            5899999999999999999999999999976 99999999987567899999998



>1ayj_A RS-AFP1, antifungal protein 1; fungicide, plant defensin, cysteine-stabilized ALFA/beta motif; HET: PCA; NMR {Raphanus sativus var} SCOP: g.3.7.5 Back     alignment and structure
>1bk8_A AH-AMP1, antimicrobial protein 1; plant defensin, cysteine-stabilized ALFA/ beta motif; NMR {Aesculus hippocastanum} SCOP: g.3.7.5 Back     alignment and structure
>3psm_A Defensin, SPE10; dimer, antimicrobial protein; 0.98A {Pachyrhizus erosus} SCOP: g.3.7.5 PDB: 2gl1_A 2lj7_A Back     alignment and structure
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Back     alignment and structure
>1n4n_A PHD1, floral defensin-like protein 1; cysteine-stabilised alpha-beta motif, fifth disulfide bond, plant protein; NMR {Petunia x hybrida} SCOP: g.3.7.5 Back     alignment and structure
>1mr4_A Nicotiana alata plant defensin 1 (NAD1); cysteine-stabilized alpha-beta motif, plant defensin fold, plant protein; NMR {Nicotiana tabacum} SCOP: g.3.7.5 PDB: 4aaz_A 4ab0_A Back     alignment and structure
>1gps_A Gamma-1-P thionin; plant toxin; NMR {Triticum turgidum} SCOP: g.3.7.5 PDB: 1gpt_A Back     alignment and structure
>1jkz_A PSD1, defense-related peptide 1; plant defensin, Cys-rich, antifungal, antifungal protein; NMR {Pisum sativum} SCOP: g.3.7.5 Back     alignment and structure
>2lr3_A Defensin; fungal disease, antifungal agent, antifungal protein; NMR {Medicago truncatula} Back     alignment and structure
>1ti5_A Plant defensin; insecticidal activity, MUNG bean, plant protein; NMR {Vigna radiata} Back     alignment and structure
>1myn_A Drosomycin; insect immunity, antifungal, csalpha-beta motif, signal protein; NMR {Drosophila melanogaster} SCOP: g.3.7.4 Back     alignment and structure
>1i2u_A Defensin heliomicin; alpha-beta protein, CSAB motif (cysteine stabilized alpha- helix beta-sheet motif), antifungal protein; NMR {Heliothis virescens} SCOP: g.3.7.4 PDB: 1ozz_A 1i2v_A 1p0a_A 1p00_A Back     alignment and structure
>1jxc_A Putative trypsin inhibitor ATTI-2; chymotrypsin inhibitor, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: g.3.7.5 Back     alignment and structure
>2lr5_A Micasin; antimicrobial protein; NMR {Arthroderma otae} Back     alignment and structure
>1zfu_A Plectasin; defensin,antimicrobial peptide,cysteine stabilized alpha- beta motif, antimicrobial protein; NMR {Pseudoplectania nigrella} PDB: 3e7r_L 3e7u_X Back     alignment and structure
>1fjn_A Defensin MGD-1; cystine stabilized alpha-beta motif, antibacterial, disulfide bond, synthesis, antimicrobial protein; NMR {Synthetic} SCOP: g.3.7.3 Back     alignment and structure
>2k9o_A VM24 scorpion toxin; ALFA/beta scaffold, beta sheet, ALFA helix, scorpion K+ toxin; NMR {Synthetic} Back     alignment and structure
>1wmt_A ISTX; neurotoxin, potassium channel blocker, solution structure, alpha-K toxin family, scorpion toxin; NMR {Synthetic} SCOP: g.3.7.2 Back     alignment and structure
>1c49_A Toxin K-beta; scorpion toxin, potassium channels blockers, alpha-K toxin family, neurotoxin, solution structure; NMR {Pandinus imperator} SCOP: g.3.7.2 PDB: 2pta_A Back     alignment and structure
>2b68_A Defensin; antibacterial peptide, cysteine-rich peptide, antimicrobial protein; NMR {Crassostrea gigas} Back     alignment and structure
>1ica_A Insect defensin A; antibacterial protein; NMR {Protophormia terraenovae} SCOP: g.3.7.4 PDB: 1l4v_A 2lld_A 2ny8_X Back     alignment and structure
>1brz_A Brazzein; sweet protein, cysteine-stabilized alpha-beta; HET: PCA; NMR {Pentadiplandra brazzeana} SCOP: g.3.7.5 PDB: 2brz_A* 2kgq_A 2kyq_A Back     alignment and structure
>2e3g_A Defensin, mutant DEF-DAA; insect defensin, CSAB motif, antibacterial, antimicrobial protein; NMR {Anopheles gambiae} PDB: 2nz3_A Back     alignment and structure
>1wt7_A BUTX-MTX; maurotoxin, butantoxin, scorpion toxin, K+ channels, molecular contacts, toxin affinity; NMR {Synthetic} SCOP: g.3.7.2 PDB: 2z3s_A Back     alignment and structure
>2e3e_A Defensin, mutant DEF-BBB; insect defensin, CSAB motif, antibacterial, antimicrobial protein; NMR {Anopheles gambiae} PDB: 2e3f_A 2ny9_X Back     alignment and structure
>1quz_A HSTX1 toxin; scorpion toxin, alpha beta, molecular modeling, potassium channel; NMR {Synthetic} SCOP: k.23.1.1 PDB: 1y2p_A 1wpd_A Back     alignment and structure
>1aho_A Toxin II; scorpion, AB initio phasing, neurotoxin; 0.96A {Androctonus australis} SCOP: g.3.7.1 PDB: 1ptx_A 4aei_A* 1seg_A 2kbh_A 2kbj_A Back     alignment and structure
>1kv0_A BMK M7, BMKM7, alpha-like toxin BMK-M7; non-prolyl CIS peptide bond, CIS/trans isomerization, dimeric structure, scorpion toxin; 1.40A {Mesobuthus martensii} SCOP: g.3.7.1 Back     alignment and structure
>2yeo_A Alpha-insect toxin lqhait; defense response; HET: DR8 DR0 EDO; 1.08A {Leiurus quinquestriatus hebraeus} PDB: 1lqh_A 1lqi_A 2asc_A* 2atb_A 1lqq_A 1t7e_A 1djt_A 1sn1_A 1zvg_A 1t7b_A 1zut_A 1t7a_A 1zu3_A 1chz_A 1zve_A 1zyv_A 1zyw_A 1omy_A 2e0h_A 2kbk_A ... Back     alignment and structure
>1snb_A Neurotoxin BMK M8; sodium channel inhibitor, scorpion; 1.90A {Mesobuthus martensii} SCOP: g.3.7.1 Back     alignment and structure
>1dq7_A Neurotoxin; 2.20A {Mesobuthus tamulus} SCOP: g.3.7.1 PDB: 2a7t_A Back     alignment and structure
>1nra_A Neurotoxin V, CSE-V; NMR {Centruroides sculpturatus} SCOP: g.3.7.1 PDB: 1nrb_A Back     alignment and structure
>1qky_A PI7, toxin 7 from pandinus imperator; neurotoxin; NMR {Pandinus imperator} SCOP: g.3.7.2 Back     alignment and structure
>1n8m_A PI4, potassium channel blocking toxin 4; potassium channel blocker, disulfide bridge stabilized alpha beta motif; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1v56_A 1txm_A Back     alignment and structure
>1t1t_A Kurtoxin, KTX; cysteine stabilized alpha-beta; NMR {Parabuthus transvaalicus} Back     alignment and structure
>1wz5_A Potassium channel blocking toxin 1; ionic channel inhibitor; HET: ABA; NMR {Pandinus imperator} Back     alignment and structure
>1i6f_A Neurotoxin V-5, CSE-V5; scorpion, sodium channel, alpha helix, beta sheet, disulfide linkages; NMR {Centruroides sculpturatus} SCOP: g.3.7.1 PDB: 1i6g_A 1nh5_A Back     alignment and structure
>1c55_A Butantoxin; structure; NMR {Tityus serrulatus} SCOP: g.3.7.2 PDB: 1c56_A Back     alignment and structure
>2i61_A Insect toxin 2; scorpion toxin, depressant, anti-insect, sodium channel modifer; 1.20A {Leiurus quinquestriatus hebraeus} Back     alignment and structure
>1j5j_A BEKM-1 toxin; alpha-beta motif, cysteine-knot motif; NMR {Mesobuthus eupeus} SCOP: g.3.7.2 PDB: 1lgl_A Back     alignment and structure
>1bmr_A LQH III alpha-like toxin; scorpion toxin, sodium channel inhibitor; NMR {Leiurus quinquestriatus hebraeus} SCOP: g.3.7.1 PDB: 1fh3_A Back     alignment and structure
>2axk_A Discrepin; scorpion toxin, A-current, K+-channel,; HET: PCA; NMR {Synthetic} Back     alignment and structure
>1cmr_A Charybdotoxin, alpha chimera; antagonist of nicotinic acetylcholine receptor, curaremimetic protein; NMR {Synthetic} SCOP: g.3.7.2 Back     alignment and structure
>1hly_A Hongotoxin 1; scorpion, centruroides limbatus HGTX1, potassium channel; NMR {Centruroides limbatus} SCOP: g.3.7.2 PDB: 1mtx_A 1sxm_A Back     alignment and structure
>1hp2_A Tityustoxin K alpha; K+ channel, scorpion toxin, alpha-K toxin,; NMR {Tityus serrulatus} SCOP: g.3.7.2 Back     alignment and structure
>1big_A Toxin BMTX1; scorpion, neurotoxin, structure, large conductance potassium channel, voltage gated potassium channel; HET: PCA; NMR {Mesobuthus martensii} SCOP: g.3.7.2 PDB: 2bmt_A* Back     alignment and structure
>2ln4_A Coprisin; antimicrobial protein, defensin-like peptide; NMR {Copris tripartitus} Back     alignment and structure
>2koz_A Nasonin-1; alpha/beta structure, disulfide bonds, de novo protein; NMR {Synthetic construct} PDB: 2kp0_A Back     alignment and structure
>1bah_A Charybdotoxin, chabii; neurotoxin, potassium channel inhibitor; HET: PCA ABA; NMR {Leiurus quinquestriatus} SCOP: g.3.7.2 PDB: 2a9h_E* 2crd_A* 1lir_A* Back     alignment and structure
>1agt_A Agitoxin 2; potassium channel blocker, neurotoxin; NMR {Leiurus quinquestriatus hebraeus} SCOP: g.3.7.2 PDB: 1xsw_A 2ktx_A 2uvs_A 3odv_A* 1ktx_A 2ck4_A 1sco_A 2k4u_A 1bkt_A 2ck5_A 2kir_A Back     alignment and structure
>1m2s_A Toxin BMTX3, neurotoxin TX3; alpha/beta scaffold; NMR {Mesobuthus martensii} SCOP: g.3.7.2 Back     alignment and structure
>1npi_A Toxin VII, TSTX-VII; xcitatory neurotoxin; 1.16A {Tityus serrulatus} SCOP: g.3.7.1 PDB: 1b7d_A Back     alignment and structure
>1b3c_A Protein (neurotoxin CSE-I); scorpion neurotoxin, NEW world toxin; NMR {Centruroides sculpturatus} SCOP: g.3.7.1 PDB: 2b3c_A Back     alignment and structure
>1t0z_A Insect neurotoxin; alpha-beta; 2.60A {Mesobuthus martensii} SCOP: g.3.7.1 PDB: 1wwn_A Back     alignment and structure
>2sn3_A Scorpion neurotoxin (variant 3); 1.20A {Centruroides exilicauda} SCOP: g.3.7.1 PDB: 1jza_A 1jzb_A 1vna_A 1vnb_A 2kja_A Back     alignment and structure
>1pe4_A Neurotoxin CN11, CN12; scorpion toxin, sodium channels alpha toxin; NMR {Centruroides noxius} SCOP: g.3.7.1 Back     alignment and structure
>2ljm_A CSS II, cssii, beta-mammal toxin CSS2; CS ALFA beta; NMR {Centruroides suffusus suffusus} Back     alignment and structure
>2yc1_C Beta-mammal toxin CN2; immune system-toxin complex, scorpion toxin; 1.90A {Centruroides noxius hoffmann} PDB: 2ybr_C 1cn2_A 2li7_A Back     alignment and structure
>2ddl_A Leiurotoxin, LEI4P; scorpion toxin analog; NMR {Synthetic} Back     alignment and structure
>1tsk_A TS KAPA; scorpion, toxin, potassium channel, neurotoxin; NMR {Tityus serrulatus} SCOP: g.3.7.2 Back     alignment and structure
>1pjv_A Cobatoxin 1, COTX1, GTIX; scorpion toxin, centuroides noxius, K+ channel, chemical synthesis, 3-D structure, 1H-spectroscopy, circular dichroism; NMR {Synthetic} SCOP: g.3.7.2 Back     alignment and structure
>1r1g_A Neurotoxin BMK37, BMBKTTX1; siras from S atoms, scorpion toxin, reductive dimethylation; HET: MLY; 1.72A {Synthetic} SCOP: g.3.7.2 PDB: 1q2k_A 3e8y_X Back     alignment and structure
>1bcg_A Toxin BJXTR-IT; excitatory neurotoxin; 2.10A {Hottentotta judaicus} SCOP: g.3.7.1 Back     alignment and structure
>2lt8_A Eurocin; A/B-fold, cysteine stabilised, antimicrobial protein; NMR {Eurotium amstelodami} Back     alignment and structure
>1ne5_A Ergtoxin, cnerg1, ERGTX; alpha-helix, triple-stranded beta-sheet; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1px9_A Back     alignment and structure
>1pvz_A K+ toxin-like peptide; alpha/beta scaffold; NMR {Mesobuthus martensii} SCOP: g.3.7.2 Back     alignment and structure
>2k35_A Hydramacin-1; antimicrobial protein; NMR {Hydra} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 78
d1ayja_51 g.3.7.5 (A:) Antifungal protein 1 (RS-AFP1) {Radis 1e-14
d1bk8a_50 g.3.7.5 (A:) Antimicrobial protein 1 (AH-AMP1) {Ho 1e-13
d1gpsa_47 g.3.7.5 (A:) gamma-Thionin {English wheat (Triticu 0.001
d1jkza_46 g.3.7.5 (A:) Defensin 1 (PSD1) {Pea (Pisum sativum 0.002
>d1ayja_ g.3.7.5 (A:) Antifungal protein 1 (RS-AFP1) {Radish (Raphanus sativus) [TaxId: 3726]} Length = 51 Back     information, alignment and structure

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Scorpion toxin-like
family: Plant defensins
domain: Antifungal protein 1 (RS-AFP1)
species: Radish (Raphanus sativus) [TaxId: 3726]
 Score = 59.1 bits (143), Expect = 1e-14
 Identities = 22/50 (44%), Positives = 27/50 (54%)

Query: 29 KVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC 78
          K+C+  S TWSG+C N   C  QC   E AR G+C+       C CYF C
Sbjct: 2  KLCERPSGTWSGVCGNNNACKNQCINLEKARHGSCNYVFPAHKCICYFPC 51


>d1bk8a_ g.3.7.5 (A:) Antimicrobial protein 1 (AH-AMP1) {Horse chestnut (Aesculus hippocastanum) [TaxId: 43364]} Length = 50 Back     information, alignment and structure
>d1gpsa_ g.3.7.5 (A:) gamma-Thionin {English wheat (Triticum turgidum) [TaxId: 4571]} Length = 47 Back     information, alignment and structure
>d1jkza_ g.3.7.5 (A:) Defensin 1 (PSD1) {Pea (Pisum sativum) [TaxId: 3888]} Length = 46 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query78
d1ayja_51 Antifungal protein 1 (RS-AFP1) {Radish (Raphanus s 99.82
d1bk8a_50 Antimicrobial protein 1 (AH-AMP1) {Horse chestnut 99.79
d1gpsa_47 gamma-Thionin {English wheat (Triticum turgidum) [ 99.74
d1mr4a_47 Floral defensin 1 {Common tobacco (Nicotiana tabac 99.74
d1n4na_47 Floral defensin 1 {Garden petunia (Petunia x hybri 99.72
d1jkza_46 Defensin 1 (PSD1) {Pea (Pisum sativum) [TaxId: 388 99.54
d1myna_44 Drosomycin {Fruit fly (Drosophila melanogaster) [T 98.5
d1jxca_68 Trypsin/chymotrypsin inhibitor ATT {Mouse-ear cres 97.62
d1kv0a_66 Tx10 alpha-like toxin {Chinese scorpion (Buthus ma 97.16
d2asca165 alpha toxin {Scorpion (Leiurus quinquestriatus heb 97.02
d1fjna_39 Defensin MGD-1 {Mediterranean mussel (Mytilus gall 96.88
d1snba_64 Scorpion toxin {Scorpion (Buthus martensii), toxin 96.83
d1ahoa_64 Scorpion toxin {Scorpion (Androctonus australis he 96.75
d1ozza_44 Defensin ARD1 {Archaeoprepona demophon [TaxId: 191 96.73
d1dq7a_64 Scorpion toxin {Indian red scorpion (Buthus tamulu 96.69
d1nraa_63 Scorpion toxin {Centruroides sculpturatus, variant 96.68
d1bmra_67 LQH III alpha-like toxin, LQH {Hebraei scorpion (L 96.47
d1nh5a_60 Scorpion toxin {Bark scorpion (Centruroides sculpt 96.27
d1r1ga_31 Neurotoxin bmk37 {Chinese scorpion (Buthus martens 96.26
d1pjva_32 Cobatoxin 1 {Scorpion (Centruroides noxius) [TaxId 96.03
d1icaa_40 Defensin A {Flesh fly (Phormia terranovae) [TaxId: 95.97
d1npia_61 Scorpion toxin {Brazilian scorpion (Tityus serrula 95.49
d1t0za_72 Scorpion toxin {Scorpion (Buthus martensii), BmK I 94.98
d1tska_35 Toxin ts kappa {Scorpion (Tityus serrulatus) [TaxI 94.65
d1bcga_74 Scorpion toxin {Scorpion (Buthotus judaicus), BJXT 94.62
d2b3ca_64 Scorpion toxin {Centruroides sculpturatus, beta [T 93.49
d2sn3a_65 Scorpion toxin {Centruroides sculpturatus, variant 93.43
d1cn2a_66 Scorpion toxin {Mexican scorpion (Centruroides nox 93.23
d1wmta_41 Istx {Scorpion (Opisthacanthus madagascariensis) [ 92.69
d1pe4a_67 Scorpion toxin {Mexican scorpion (Centruroides nox 92.61
d1m2sa_37 Bmtx3 {Buthus martensii karsch [TaxId: 34649]} 90.97
d1sxma_39 Noxiustoxin {Mexican scorpion (Centruroides noxius 90.38
d2ptaa_35 Pandinus toxin {Emperor scorpion (Pandinus imperat 89.84
d1wpda_34 Maurotoxin {Scorpion (Scorpio maurus) [TaxId: 5395 89.1
d1agta_38 Agitoxin {Scorpion (Leiurus quinquestriatus hebrae 88.6
d1biga_37 Bmtx1 {Buthus martensii [TaxId: 34649]} 88.44
d1cmra_31 Charybdotoxin {Scorpion (Leiurus quinquestriatus h 87.84
d2crda_37 Charybdotoxin {Scorpion (Leiurus quinquestriatus h 87.55
d1c55a_40 Butantoxin {Brazilian scorpion (Tityus serrulatus) 87.44
d1hp2a_37 alpha-KTX, K+-channel blocker {Brazilian scorpion 87.1
d1j5ja_36 Bekm-1 {Lesser asian scorpion (Buthus eupeus) [Tax 86.3
d1jlza_26 alpha-KTX, K+-channel blocker {Scorpion (Tityus ca 85.43
d1px9a_42 Ergtoxin (HERG specific toxin CnErg1) {Scorpion (C 83.29
d1brza_54 Brazzein {J'oublie (Pentadiplandra brazzeana) [Tax 82.16
>d1ayja_ g.3.7.5 (A:) Antifungal protein 1 (RS-AFP1) {Radish (Raphanus sativus) [TaxId: 3726]} Back     information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Scorpion toxin-like
family: Plant defensins
domain: Antifungal protein 1 (RS-AFP1)
species: Radish (Raphanus sativus) [TaxId: 3726]
Probab=99.82  E-value=8.7e-22  Score=105.48  Aligned_cols=50  Identities=44%  Similarity=0.987  Sum_probs=48.4

Q ss_pred             hhhhhcCCcceeecCCccccHHHhcccCCCCCceeecCCCCcceEeecCC
Q 043728           29 KVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC   78 (78)
Q Consensus        29 ~~C~~~s~~~~G~C~~~~~C~~~C~~~eg~~~G~C~~~~~~~~C~C~~~C   78 (78)
                      ++|+++|+||+|.|.+++.|+++|+++||+.+|.|+..+|.++|+|||||
T Consensus         2 klCer~S~TWsG~Cgn~~~C~~qC~~~E~A~hGaCh~~f~~~~CfCYF~C   51 (51)
T d1ayja_           2 KLCERPSGTWSGVCGNNNACKNQCINLEKARHGSCNYVFPAHKCICYFPC   51 (51)
T ss_dssp             CCEEEECSSCCSCCSCHHHHHHHHHHHSCCSCEEEECCSSSCEEEEEECC
T ss_pred             chhcccCCceeeccCCchHHHHHHHhhhhccccccccccCCccEEEeccC
Confidence            68999999999999999999999999999999999999999999999998



>d1bk8a_ g.3.7.5 (A:) Antimicrobial protein 1 (AH-AMP1) {Horse chestnut (Aesculus hippocastanum) [TaxId: 43364]} Back     information, alignment and structure
>d1gpsa_ g.3.7.5 (A:) gamma-Thionin {English wheat (Triticum turgidum) [TaxId: 4571]} Back     information, alignment and structure
>d1mr4a_ g.3.7.5 (A:) Floral defensin 1 {Common tobacco (Nicotiana tabacum), NAD1 [TaxId: 4097]} Back     information, alignment and structure
>d1n4na_ g.3.7.5 (A:) Floral defensin 1 {Garden petunia (Petunia x hybrida), PHD1 [TaxId: 4102]} Back     information, alignment and structure
>d1jkza_ g.3.7.5 (A:) Defensin 1 (PSD1) {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1myna_ g.3.7.4 (A:) Drosomycin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1jxca_ g.3.7.5 (A:) Trypsin/chymotrypsin inhibitor ATT {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1kv0a_ g.3.7.1 (A:) Tx10 alpha-like toxin {Chinese scorpion (Buthus martensii) [TaxId: 34649]} Back     information, alignment and structure
>d2asca1 g.3.7.1 (A:1-65) alpha toxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]} Back     information, alignment and structure
>d1fjna_ g.3.7.3 (A:) Defensin MGD-1 {Mediterranean mussel (Mytilus galloprovincialis) [TaxId: 29158]} Back     information, alignment and structure
>d1snba_ g.3.7.1 (A:) Scorpion toxin {Scorpion (Buthus martensii), toxin m8 [TaxId: 34649]} Back     information, alignment and structure
>d1ahoa_ g.3.7.1 (A:) Scorpion toxin {Scorpion (Androctonus australis hector), Toxin II [TaxId: 70175]} Back     information, alignment and structure
>d1ozza_ g.3.7.4 (A:) Defensin ARD1 {Archaeoprepona demophon [TaxId: 191427]} Back     information, alignment and structure
>d1dq7a_ g.3.7.1 (A:) Scorpion toxin {Indian red scorpion (Buthus tamulus), neurotoxin [TaxId: 34647]} Back     information, alignment and structure
>d1nraa_ g.3.7.1 (A:) Scorpion toxin {Centruroides sculpturatus, variant V [TaxId: 218467]} Back     information, alignment and structure
>d1bmra_ g.3.7.1 (A:) LQH III alpha-like toxin, LQH {Hebraei scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]} Back     information, alignment and structure
>d1nh5a_ g.3.7.1 (A:) Scorpion toxin {Bark scorpion (Centruroides sculpturatus), cse-v5 [TaxId: 218467]} Back     information, alignment and structure
>d1r1ga_ g.3.7.2 (A:) Neurotoxin bmk37 {Chinese scorpion (Buthus martensi karsch) [TaxId: 34649]} Back     information, alignment and structure
>d1pjva_ g.3.7.2 (A:) Cobatoxin 1 {Scorpion (Centruroides noxius) [TaxId: 6878]} Back     information, alignment and structure
>d1icaa_ g.3.7.4 (A:) Defensin A {Flesh fly (Phormia terranovae) [TaxId: 34676]} Back     information, alignment and structure
>d1npia_ g.3.7.1 (A:) Scorpion toxin {Brazilian scorpion (Tityus serrulatus) [TaxId: 6887]} Back     information, alignment and structure
>d1t0za_ g.3.7.1 (A:) Scorpion toxin {Scorpion (Buthus martensii), BmK IT-AP [TaxId: 34649]} Back     information, alignment and structure
>d1tska_ g.3.7.2 (A:) Toxin ts kappa {Scorpion (Tityus serrulatus) [TaxId: 6887]} Back     information, alignment and structure
>d1bcga_ g.3.7.1 (A:) Scorpion toxin {Scorpion (Buthotus judaicus), BJXTR-IT [TaxId: 6863]} Back     information, alignment and structure
>d2b3ca_ g.3.7.1 (A:) Scorpion toxin {Centruroides sculpturatus, beta [TaxId: 218467]} Back     information, alignment and structure
>d2sn3a_ g.3.7.1 (A:) Scorpion toxin {Centruroides sculpturatus, variant 3 [TaxId: 218467]} Back     information, alignment and structure
>d1cn2a_ g.3.7.1 (A:) Scorpion toxin {Mexican scorpion (Centruroides noxius), toxin II [TaxId: 6878]} Back     information, alignment and structure
>d1wmta_ g.3.7.2 (A:) Istx {Scorpion (Opisthacanthus madagascariensis) [TaxId: 167108]} Back     information, alignment and structure
>d1pe4a_ g.3.7.1 (A:) Scorpion toxin {Mexican scorpion (Centruroides noxius) [TaxId: 6878]} Back     information, alignment and structure
>d1m2sa_ g.3.7.2 (A:) Bmtx3 {Buthus martensii karsch [TaxId: 34649]} Back     information, alignment and structure
>d1sxma_ g.3.7.2 (A:) Noxiustoxin {Mexican scorpion (Centruroides noxius) [TaxId: 6878]} Back     information, alignment and structure
>d2ptaa_ g.3.7.2 (A:) Pandinus toxin {Emperor scorpion (Pandinus imperator), PITX-Ka [TaxId: 55084]} Back     information, alignment and structure
>d1wpda_ g.3.7.2 (A:) Maurotoxin {Scorpion (Scorpio maurus) [TaxId: 53956]} Back     information, alignment and structure
>d1agta_ g.3.7.2 (A:) Agitoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]} Back     information, alignment and structure
>d1biga_ g.3.7.2 (A:) Bmtx1 {Buthus martensii [TaxId: 34649]} Back     information, alignment and structure
>d1cmra_ g.3.7.2 (A:) Charybdotoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]} Back     information, alignment and structure
>d2crda_ g.3.7.2 (A:) Charybdotoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]} Back     information, alignment and structure
>d1c55a_ g.3.7.2 (A:) Butantoxin {Brazilian scorpion (Tityus serrulatus) [TaxId: 6887]} Back     information, alignment and structure
>d1hp2a_ g.3.7.2 (A:) alpha-KTX, K+-channel blocker {Brazilian scorpion (Tityus serrulatus), Tstx-k alpha [TaxId: 6887]} Back     information, alignment and structure
>d1j5ja_ g.3.7.2 (A:) Bekm-1 {Lesser asian scorpion (Buthus eupeus) [TaxId: 34648]} Back     information, alignment and structure
>d1jlza_ g.3.7.2 (A:) alpha-KTX, K+-channel blocker {Scorpion (Tityus cambridgei) [TaxId: 184226]} Back     information, alignment and structure
>d1px9a_ g.3.7.2 (A:) Ergtoxin (HERG specific toxin CnErg1) {Scorpion (Centruroides noxius) [TaxId: 6878]} Back     information, alignment and structure
>d1brza_ g.3.7.5 (A:) Brazzein {J'oublie (Pentadiplandra brazzeana) [TaxId: 43545]} Back     information, alignment and structure