Citrus Sinensis ID: 043741

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWNEAVSKSPKKPCDDQSHES
Secondary Structure (PSIPRED)
cEEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
iavvkdsndpyEDFRRSMLQMIMEKEIYSNDDLKELLNCFlqlnspsnhDVIVQAFTGVWneavskspkkpcddqshes
Flexible Loop (DISEMBL)
iavvkdsndpyedFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGvwneavskspkkpcddqshes
Low Complexity Region (SEG)
IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWNEAVSKSPKKPCDDQSHES
Disordered region (IsUnstruct)
******************LQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWNE*****************
Disordered Region (DISOPRED)
IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWNE*****************
Disordered Region (DISEMBL)
********DPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWNEA****************
Disordered Region (DISPRO)
IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWNEAVSKS************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWNEAVSKSPKKPCDDQSHES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
255565747	175	hypothetical protein RCOM_1282480 [Ricin	0.898	0.405	0.716	1e-23
224102859	185	predicted protein [Populus trichocarpa]	0.911	0.389	0.698	4e-22
255578595	209	conserved hypothetical protein [Ricinus	0.822	0.311	0.738	2e-21
356500619	169	PREDICTED: uncharacterized protein LOC10	0.822	0.384	0.723	2e-20
358343549	199	hypothetical protein MTR_013s0006 [Medic	0.898	0.356	0.661	2e-20
356534528	177	PREDICTED: uncharacterized protein LOC10	0.822	0.367	0.707	5e-20
356570887	204	PREDICTED: uncharacterized protein LOC10	0.822	0.318	0.707	6e-20
356503837	158	PREDICTED: uncharacterized protein LOC10	0.822	0.411	0.707	7e-20
224088412	116	predicted protein [Populus trichocarpa]	0.822	0.560	0.692	9e-20
449437852	167	PREDICTED: uncharacterized protein LOC10	0.974	0.461	0.532	1e-18

>gi|255565747|ref|XP_002523863.1| hypothetical protein RCOM_1282480 [Ricinus communis] gi|223536951|gb|EEF38589.1| hypothetical protein RCOM_1282480 [Ricinus communis]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 63/74 (85%), Gaps = 3/74 (4%)

Query: 1   IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 60
           IAVVKDSNDPY+DF+ SMLQMI EKEIYS DDL+ELLNCFL+LNSP +H +IVQAFT +W
Sbjct: 97  IAVVKDSNDPYQDFKHSMLQMIFEKEIYSADDLQELLNCFLKLNSPRHHGLIVQAFTEIW 156

Query: 61  NEAVSKS---PKKP 71
           N+ +SK    P+KP
Sbjct: 157 NDVISKKLMDPQKP 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102859|ref|XP_002312831.1| predicted protein [Populus trichocarpa] gi|222849239|gb|EEE86786.1| predicted protein [Populus trichocarpa]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 62/73 (84%), Gaps = 1/73 (1%)

Query: 1   IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 60
           IAVVK SNDP++DF+ SMLQM++EK IYS +DL+ELLNCFL+LNSP +H VIVQAFT +W
Sbjct: 109 IAVVKYSNDPFQDFKHSMLQMVVEKNIYSRNDLEELLNCFLELNSPCHHSVIVQAFTEIW 168

Query: 61  NEAVSKS-PKKPC 72
           NE +SK   KKPC
Sbjct: 169 NEIISKRIVKKPC 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578595|ref|XP_002530159.1| conserved hypothetical protein [Ricinus communis] gi|223530320|gb|EEF32214.1| conserved hypothetical protein [Ricinus communis]

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 55/65 (84%)

Query: 1   IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 60
           +AV KDS+DPY DFR SMLQMI+EKEIYS DDLKELLNCFLQLNSP +H +IV+AFT +W
Sbjct: 114 VAVEKDSDDPYLDFRHSMLQMILEKEIYSKDDLKELLNCFLQLNSPYHHGIIVRAFTEIW 173

Query: 61  NEAVS 65
           N   S
Sbjct: 174 NGVYS 178

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500619|ref|XP_003519129.1| PREDICTED: uncharacterized protein LOC100818531 [Glycine max]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 54/65 (83%)

Query: 1   IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 60
           +AV KDS+DPY DFR SMLQMI+E EIYS DDL+ELLNCFLQLNSP +H VIV+AFT +W
Sbjct: 86  VAVEKDSDDPYLDFRHSMLQMILENEIYSKDDLRELLNCFLQLNSPDHHGVIVRAFTEIW 145

Query: 61  NEAVS 65
           N   S
Sbjct: 146 NGVFS 150

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358343549|ref|XP_003635863.1| hypothetical protein MTR_013s0006 [Medicago truncatula] gi|355501798|gb|AES83001.1| hypothetical protein MTR_013s0006 [Medicago truncatula]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 54/71 (76%)

Query: 1   IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 60
           +AV KDS DPY DFR SMLQMI+E EIYS DDL+ELLNCFLQLN+P +H VIV+AFT +W
Sbjct: 112 VAVEKDSEDPYLDFRHSMLQMILENEIYSKDDLRELLNCFLQLNAPYHHGVIVRAFTEIW 171

Query: 61  NEAVSKSPKKP 71
           N      P  P
Sbjct: 172 NGVSIMRPSSP 182

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534528|ref|XP_003535805.1| PREDICTED: uncharacterized protein LOC100786450 [Glycine max]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 54/65 (83%)

Query: 1   IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 60
           +AV KDS+DPY DFR SMLQMI+E EIYS +DL+ELLNCFLQLNSP +H VIV+AFT +W
Sbjct: 93  VAVEKDSDDPYLDFRHSMLQMILENEIYSKEDLRELLNCFLQLNSPDHHGVIVRAFTEIW 152

Query: 61  NEAVS 65
           N   S
Sbjct: 153 NGVFS 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570887|ref|XP_003553615.1| PREDICTED: uncharacterized protein LOC100785434 [Glycine max]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 53/65 (81%)

Query: 1   IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 60
           +AV KDS+DPY DFR SMLQMI+E EIYS  DL+ELLNCFLQLNSP +H VIV+AFT +W
Sbjct: 126 VAVEKDSDDPYLDFRHSMLQMILENEIYSKQDLRELLNCFLQLNSPHHHGVIVRAFTEIW 185

Query: 61  NEAVS 65
           N   S
Sbjct: 186 NAVFS 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503837|ref|XP_003520709.1| PREDICTED: uncharacterized protein LOC100804319 [Glycine max]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 53/65 (81%)

Query: 1   IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 60
           +AV KDS+DPY DFR SMLQMI+E EIYS  DL+ELLNCFLQLNSP +H VIV+AFT +W
Sbjct: 80  VAVEKDSDDPYLDFRHSMLQMILENEIYSKQDLRELLNCFLQLNSPHHHGVIVRAFTEIW 139

Query: 61  NEAVS 65
           N   S
Sbjct: 140 NGVFS 144

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088412|ref|XP_002308445.1| predicted protein [Populus trichocarpa] gi|222854421|gb|EEE91968.1| predicted protein [Populus trichocarpa]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 54/65 (83%)

Query: 1  IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 60
          +AV KDS+DPY DFR SMLQMI+EKEIYS DDL++LL+CFLQLNSP  H VI++AFT +W
Sbjct: 32 VAVEKDSDDPYLDFRHSMLQMILEKEIYSKDDLRQLLDCFLQLNSPYYHGVIIRAFTEIW 91

Query: 61 NEAVS 65
          N   S
Sbjct: 92 NGVFS 96

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437852|ref|XP_004136704.1| PREDICTED: uncharacterized protein LOC101216629 [Cucumis sativus] gi|449515141|ref|XP_004164608.1| PREDICTED: uncharacterized protein LOC101226992 [Cucumis sativus]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 1   IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 60
           +AV KDSNDPY DFR+SMLQMI+E EIY+ + L+ELL+CFL LNSP NH +I++AF  +W
Sbjct: 85  VAVEKDSNDPYVDFRQSMLQMILENEIYTQEGLRELLSCFLHLNSPCNHGIIIRAFAEIW 144

Query: 61  NEAVSKSPKKPCDDQSH 77
           +         P   + H
Sbjct: 145 DSVFCARSAAPARQRRH 161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
TAIR|locus:4515102951	183	AT2G36026 "AT2G36026" [Arabido	0.886	0.382	0.557	2.2e-18
TAIR|locus:504955854	159	OFP6 "ovate family protein 6"	0.822	0.408	0.6	1.6e-17
TAIR|locus:2183209	221	OFP8 "ovate family protein 8"	0.746	0.266	0.559	1.3e-13
TAIR|locus:2046308	315	OFP7 "ovate family protein 7"	0.759	0.190	0.516	2.2e-13
TAIR|locus:2033060	315	OFP4 "ovate family protein 4"	0.835	0.209	0.439	1.4e-11
TAIR|locus:2161198	296	OFP3 "ovate family protein 3"	0.746	0.199	0.508	1.5e-11
TAIR|locus:2117079	349	OFP5 "ovate family protein 5"	0.772	0.174	0.524	4.2e-11
TAIR|locus:2176297	196	OFP10 [Arabidopsis thaliana (t	0.746	0.301	0.474	7.4e-11
TAIR|locus:2064382	320	OFP2 "ovate family protein 2"	0.746	0.184	0.474	4.2e-10
TAIR|locus:2180977	270	OFP1 "ovate family protein 1"	0.746	0.218	0.491	9e-10

TAIR|locus:4515102951 AT2G36026 "AT2G36026" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 39/70 (55%), Positives = 56/70 (80%)

Query:     1 IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 60
             +AV KDS+DPY DFR+SMLQMI+E EIYS +DL+ELL+CFL LN P +H +I++AF+ +W
Sbjct:    88 VAVEKDSDDPYLDFRQSMLQMILENEIYSKNDLRELLHCFLSLNEPYHHGIIIRAFSEIW 147

Query:    61 NEAVSKSPKK 70
             +   S + ++
Sbjct:   148 DGVFSAAKRR 157

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955854 OFP6 "ovate family protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 39/65 (60%), Positives = 52/65 (80%)

Query:     1 IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 60
             +AV KDS+DPY DFR+SMLQMI+E +IYS D+L+ELL CFL LNS  +H +IV+AF+ +W
Sbjct:    68 VAVEKDSDDPYLDFRQSMLQMILENQIYSKDELRELLQCFLSLNSHYHHGIIVRAFSEIW 127

Query:    61 NEAVS 65
              +  S
Sbjct:   128 EDVSS 132

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2183209 OFP8 "ovate family protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 33/59 (55%), Positives = 46/59 (77%)

Query:     2 AVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 60
             AVVK S DPYEDFR SM++MI+E++I++  +L++LL CFL LNS  +H VIVQ F  ++
Sbjct:   157 AVVKKSKDPYEDFRTSMVEMIVERQIFAPAELQQLLQCFLSLNSRQHHKVIVQVFLEIY 215

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2046308 OFP7 "ovate family protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 31/60 (51%), Positives = 48/60 (80%)

Query:     1 IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 60
             +AVVK S DPYEDF+ SM++MI+EK+++   +L++LL+CFL LN+  +H  IV+AF+ +W
Sbjct:   228 VAVVKKSEDPYEDFKGSMMEMIVEKKMFEVAELEQLLSCFLSLNAKRHHRAIVRAFSEIW 287

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2033060 OFP4 "ovate family protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 29/66 (43%), Positives = 46/66 (69%)

Query:     2 AVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWN 61
             AV+K S DP +DFR SM++MI E  I +++D+++LL C+L LN    HD+I++ F  VW 
Sbjct:   246 AVIKSSIDPSKDFRESMVEMIAENNIRTSNDMEDLLVCYLTLNPKEYHDLIIKVFVQVWL 305

Query:    62 EAVSKS 67
             E ++ +
Sbjct:   306 EVINST 311

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2161198 OFP3 "ovate family protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 30/59 (50%), Positives = 41/59 (69%)

Query:     2 AVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 60
             A+V  S DP +DFR SM++MIME ++    DL++LL C+L LNS   HDVI++AF   W
Sbjct:   227 AIVLSSVDPEKDFRESMVEMIMENKMREQKDLEDLLACYLSLNSSEYHDVIIKAFENTW 285

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2117079 OFP5 "ovate family protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 4.2e-11, P = 4.2e-11
 Identities = 32/61 (52%), Positives = 44/61 (72%)

Query:     2 AVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWN 61
             AVVK S+DP +DFR SM++MIME  I   ++LKELL C+L+LN+   HD+I+  F  V N
Sbjct:   285 AVVKCSSDPQKDFRDSMIEMIMENGINHPEELKELLVCYLRLNTDEYHDMIISVFQQVHN 344

Query:    62 E 62
             +
Sbjct:   345 D 345

GO:0005634 "nucleus" evidence=ISM

GO:0005730 "nucleolus" evidence=IDA

GO:0030863 "cortical cytoskeleton" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2176297 OFP10 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 28/59 (47%), Positives = 43/59 (72%)

Query:     1 IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGV 59
             +A+ K+S +P+ED+++SM QMI E+ I +  +LKELL CFL +N    H++IV+AF  V
Sbjct:    98 VAMAKESINPFEDYKKSMNQMIEERYIETESELKELLRCFLDINPSPQHNLIVRAFVDV 156

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2064382 OFP2 "ovate family protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 4.2e-10, P = 4.2e-10
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query:     2 AVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 60
             AV+K S DP +DFR SM++MI E  I ++ DL++LL C+L LN    HD+I+  F  +W
Sbjct:   255 AVMKRSVDPKKDFRESMIEMIEENNIRASKDLEDLLACYLTLNPKEYHDLIIHVFEQIW 313

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048513 "organ development" evidence=RCA

TAIR|locus:2180977 OFP1 "ovate family protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 9.0e-10, P = 9.0e-10
 Identities = 29/59 (49%), Positives = 38/59 (64%)

Query:     2 AVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVW 60
             AVVK S DP  DF+ SM +MI E +I +  DL+ELL C+L LNS   H +I+  F  +W
Sbjct:   201 AVVKASVDPKRDFKESMEEMIAENKIRATKDLEELLACYLCLNSDEYHAIIINVFKQIW 259

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0051510 "regulation of unidimensional cell growth" evidence=IMP

GO:0048513 "organ development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	79
pfam04844	60	pfam04844, Ovate, Transcriptional repressor, ovate	3e-26
TIGR01568	66	TIGR01568, A_thal_3678, uncharacterized plant-spec	1e-19

>gnl|CDD|191110 pfam04844, Ovate, Transcriptional repressor, ovate

 Score = 90.7 bits (226), Expect = 3e-26
 Identities = 32/59 (54%), Positives = 41/59 (69%)

Query: 7  SNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWNEAVS 65
          S+DPYEDFRRSM++MI+E  I   DDL+ELL C+L LN+  +H  IV AF  VW    +
Sbjct: 1  SSDPYEDFRRSMVEMIVENGIRDWDDLEELLACYLSLNAKEHHRAIVAAFADVWVALFA 59

This is a family of transcriptional repressors. In plants, these proteins are important regulators of growth and development. Length = 60

>gnl|CDD|130631 TIGR01568, A_thal_3678, uncharacterized plant-specific domain TIGR01568

 Score = 74.3 bits (183), Expect = 1e-19
 Identities = 31/61 (50%), Positives = 43/61 (70%), Gaps = 1/61 (1%)

Query: 1  IAVVKDSNDPYEDFRRSMLQMIMEKEIY-SNDDLKELLNCFLQLNSPSNHDVIVQAFTGV 59
          +AV K+S+DPYEDFRRSM +MI E+E+     +L+ELL C+L LN   +H  IV+AF  +
Sbjct: 1  VAVAKESDDPYEDFRRSMEEMIEERELEADWKELEELLACYLDLNPKKSHRFIVRAFVDI 60

Query: 60 W 60
           
Sbjct: 61 L 61

This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
TIGR01568	66	A_thal_3678 uncharacterized plant-specific domain	100.0
PF04844	59	Ovate: Transcriptional repressor, ovate; InterPro:	100.0
smart00544	113	MA3 Domain in DAP-5, eIF4G, MA-3 and other protein	86.67

>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568

Probab=100.00  E-value=2.7e-40  Score=207.25  Aligned_cols=65  Identities=49%  Similarity=0.835  Sum_probs=62.9

Q ss_pred             CeeeccccChHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHHHhhc
Q 043741            1 IAVVKDSNDPYEDFRRSMLQMIMEKEIY-SNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWNEAVS   65 (79)
Q Consensus         1 vAVvk~S~DPy~DFR~SM~EMI~e~~i~-~~~dLeeLL~cYL~LN~~~~H~~I~~aF~dl~~~l~~   65 (79)
                      |||+|+|.|||+|||+||+|||+++|+. +|++|||||+|||+||+++||++|++||+|||.+|++
T Consensus         1 vAv~k~S~DPy~DFr~SM~EMI~~~~i~~~w~~LeeLL~cYL~LN~~~~H~~Iv~AF~dl~~~L~~   66 (66)
T TIGR01568         1 VAVAKESDDPYEDFRRSMEEMIEERELEADWKELEELLACYLDLNPKKSHRFIVRAFVDILSALLS   66 (66)
T ss_pred             CeeeeCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhC
Confidence            7999999999999999999999999995 7999999999999999999999999999999999985

This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.

>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length

Probab=100.00  E-value=4.8e-38  Score=193.31  Aligned_cols=59  Identities=59%  Similarity=0.980  Sum_probs=57.8

Q ss_pred             ccChHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHHHhhc
Q 043741            7 SNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWNEAVS   65 (79)
Q Consensus         7 S~DPy~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~~H~~I~~aF~dl~~~l~~   65 (79)
                      |.|||+|||+||+|||+++|+.+|++|||||+|||+||+|+||++|++||+|||.++++
T Consensus         1 S~DP~~DFr~SM~EMI~~~~i~~~~~LeeLL~cYL~LN~~~~H~~Iv~aF~dv~~~l~s   59 (59)
T PF04844_consen    1 SSDPYEDFRESMVEMIEENGIRDWDDLEELLACYLSLNSPEHHKFIVEAFVDVWVELFS   59 (59)
T ss_pred             CCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHhC
Confidence            78999999999999999999999999999999999999999999999999999999985

At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.

>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins

Probab=86.67  E-value=1.7  Score=27.54  Aligned_cols=46  Identities=24%  Similarity=0.471  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHH
Q 043741           14 FRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGVWN   61 (79)
Q Consensus        14 FR~SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~~H~~I~~aF~dl~~   61 (79)
                      ||+++...|.+-  .+..|.+|...|...||.|.+|+.+++.....+.
T Consensus         1 ~~k~i~~~l~ey--~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~l   46 (113)
T smart00544        1 LKKKIFLIIEEY--LSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCAL   46 (113)
T ss_pred             ChhHHHHHHHHH--HHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence            466666666542  1225788889999999988777777766555443

Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	79
2ion_A	152	PDCD4, programmed cell death 4, PDCD4; alpha-helic	3e-04
2nsz_A	129	Programmed cell death protein 4; PDCD4, tumor supp	3e-04
2rg8_A	165	Programmed cell death protein 4; MA3 domain, heat	9e-04

>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152

 Score = 36.0 bits (83), Expect = 3e-04
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 10 PYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQ 54
          P     + +  ++  KE   + D+ E  +C  +L  P  H  +V 
Sbjct: 4  PVNHLVKEIDMLL--KEYLLSGDISEAEHCLKELEVPHFHHELVY 46

>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129

 Score = 35.6 bits (82), Expect = 3e-04
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 10 PYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQ 54
          P     + +  ++  KE   + D+ E  +C  +L  P  H  +V 
Sbjct: 2  PVNHLVKEIDMLL--KEYLLSGDISEAEHCLKELEVPHFHHELVY 44

>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A Length = 165

 Score = 34.5 bits (79), Expect = 9e-04
 Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 12 EDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQ 54
            F +++  +I  +E + + D  E+      LN       +  
Sbjct: 7  RAFEKTLTPII--QEYFEHGDTNEVAEMLRDLNLGEMKSGVPV 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	79
2rg8_A	165	Programmed cell death protein 4; MA3 domain, heat	89.75
2nsz_A	129	Programmed cell death protein 4; PDCD4, tumor supp	87.88
2ion_A	152	PDCD4, programmed cell death 4, PDCD4; alpha-helic	87.18

>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A

Probab=89.75  E-value=0.34  Score=32.94  Aligned_cols=47  Identities=15%  Similarity=0.207  Sum_probs=38.0

Q ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 043741           10 PYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTG   58 (79)
Q Consensus        10 Py~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~~H~~I~~aF~d   58 (79)
                      +-++|++.+...|.|-  ..-.|++|.+.|.-.||+|.+|..+++-...
T Consensus         5 s~ee~~kk~~~ii~EY--f~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~   51 (165)
T 2rg8_A            5 DERAFEKTLTPIIQEY--FEHGDTNEVAEMLRDLNLGEMKSGVPVLAVS   51 (165)
T ss_dssp             SHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHTCSGGGGHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence            4678999999999874  2224789999999999999999988876654

>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A

Probab=87.88  E-value=0.36  Score=31.41  Aligned_cols=45  Identities=20%  Similarity=0.345  Sum_probs=35.4

Q ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCchHhHHHHH
Q 043741           10 PYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAF   56 (79)
Q Consensus        10 Py~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~~H~~I~~aF   56 (79)
                      |-++|++.|...|.|--  .-.|++|-..|.-.||.|.+|..+++-.
T Consensus         2 p~eel~kki~~ll~EY~--~~~D~~Ea~~cl~eL~~p~f~~e~V~~~   46 (129)
T 2nsz_A            2 PVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEA   46 (129)
T ss_dssp             CCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHhCCCccHHHHHHHH
Confidence            66789999999998742  2247899999999999998888666543

>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A

Probab=87.18  E-value=0.43  Score=32.11  Aligned_cols=47  Identities=19%  Similarity=0.333  Sum_probs=37.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCchHhHHHHHH
Q 043741            9 DPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFT   57 (79)
Q Consensus         9 DPy~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~~H~~I~~aF~   57 (79)
                      .|-.+|++.|..+|.|--  .-.|++|-..|.-.||.|.+|..+++-..
T Consensus         3 ~~~eel~kki~~lL~EY~--~~~D~~EA~~cl~EL~~p~f~~e~V~~~i   49 (152)
T 2ion_A            3 QPVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAI   49 (152)
T ss_dssp             CCCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            577899999999998741  12488999999999999998876665433

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	79
d1ug3a1	193	a.118.1.14 (A:1235-1427) Eukaryotic initiation fac	2e-04
d2nsza1	129	a.118.1.14 (A:322-450) Programmed cell death 4, PD	5e-04

>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 12 EDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQ 54
          E+  +    +I  +E    +D+KE + C  +L SPS   + V+
Sbjct: 7  EELEKKSKAII--EEYLHLNDMKEAVQCVQELASPSLLFIFVR 47

>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 5e-04
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 10 PYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQ 54
          P     + +  ++  KE   + D+ E  +C  +L  P  H  +V 
Sbjct: 2  PVNHLVKEIDMLL--KEYLLSGDISEAEHCLKELEVPHFHHELVY 44

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	79
d2nsza1	129	Programmed cell death 4, PDCD4 {Mouse (Mus musculu	86.37

>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.37  E-value=0.29  Score=30.39  Aligned_cols=47  Identities=19%  Similarity=0.303  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 043741           10 PYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTG   58 (79)
Q Consensus        10 Py~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~~H~~I~~aF~d   58 (79)
                      |-..+++.|..||.|--  +-.|++|...|.-.||+|.+|..+++-...
T Consensus         2 pv~~l~kk~~~ll~EY~--~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~   48 (129)
T d2nsza1           2 PVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIV   48 (129)
T ss_dssp             CCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence            44568889999998743  346788999999999999988776654443