Citrus Sinensis ID: 043758
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 918 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LVA2 | 982 | Pentatricopeptide repeat- | yes | no | 0.960 | 0.898 | 0.390 | 0.0 | |
| Q9CA58 | 763 | Putative pentatricopeptid | no | no | 0.737 | 0.887 | 0.252 | 4e-55 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.598 | 0.605 | 0.278 | 2e-52 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.706 | 0.820 | 0.229 | 3e-52 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.838 | 0.790 | 0.227 | 5e-51 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.720 | 0.722 | 0.240 | 2e-49 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.591 | 0.861 | 0.253 | 6e-49 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.486 | 0.603 | 0.288 | 2e-48 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.729 | 0.769 | 0.238 | 2e-48 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.571 | 0.834 | 0.240 | 4e-48 |
| >sp|Q9LVA2|PP443_ARATH Pentatricopeptide repeat-containing protein At5g62370 OS=Arabidopsis thaliana GN=At5g62370 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/934 (39%), Positives = 539/934 (57%), Gaps = 52/934 (5%)
Query: 2 QLINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQS 61
+L RGL+ SA++VI+R+I S+S+S+A ADFA G+ DS Y AL++KL + GQ
Sbjct: 52 KLGRRGLLDSAREVIRRVIDGSSSISEAALVADFAVDNGIELDSSCYGALIRKLTEMGQP 111
Query: 62 QSALLLYQNDFVALGNIED-------------------ALRHFDRLISKNIVPIKLACVS 102
A Y + G + D A H DR+I+ P + +
Sbjct: 112 GVAETFYNQRVIGNGIVPDSSVLDSMVFCLVKLRRFDEARAHLDRIIASGYAPSRNSSSL 171
Query: 103 ILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKK 162
++ L +++FLEAF F ++ G L W L GLC G L+E + +++ +
Sbjct: 172 VVDELCNQDRFLEAFHCFEQVKERGSGLWLWCCKRLFKGLCGHGHLNEAIGMLDTLCGMT 231
Query: 163 GLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMA 222
+ ++ YKSLFY CK EAE+ ME G+YVDK+MYT L+ YC + NM MA
Sbjct: 232 RMPLPVNLYKSLFYCFCKRGCAAEAEALFDHMEVDGYYVDKVMYTCLMKEYCKDNNMTMA 291
Query: 223 MRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISN 282
MRL+ RM++ E D NTLIHGF K+G+ DKG V++SQM G Q N+ T IMI +
Sbjct: 292 MRLYLRMVERSFELDPCIFNTLIHGFMKLGMLDKGRVMFSQMIKKGVQSNVFTYHIMIGS 351
Query: 283 YCREGEVDAALML-LNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAP 341
YC+EG VD AL L +N+ S +++ +VHCYT LI YK + + +L +ML N + P
Sbjct: 352 YCKEGNVDYALRLFVNNTGSEDISRNVHCYTNLIFGFYKKGGMDKAVDLLMRMLDNGIVP 411
Query: 342 DHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLL 401
DH+ F+LLK P+ EL++A+++L GCGI+P ++ G++ ++E LL
Sbjct: 412 DHITYFVLLKMLPKCHELKYAMVILQSILDNGCGINP------PVIDDLGNIEVKVESLL 465
Query: 402 RKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQV 461
+I + D LA V + +ALC Y A + ++VN G PL F+ N++IKC +Q
Sbjct: 466 GEIARKDANLAAVGLAVVTTALCSQRNYIAALSRIEKMVNLGCTPLPFSYNSVIKCLFQE 525
Query: 462 GFLEGANAIVELMQDTE-------------GNCKWGNLDSALDILDQMEVRGPKPSVAIY 508
+E ++V ++Q+ + CK + D+A I+D ME G +P+VAIY
Sbjct: 526 NIIEDLASLVNIIQELDFVPDVDTYLIVVNELCKKNDRDAAFAIIDAMEELGLRPTVAIY 585
Query: 509 DAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKE 568
+IIG L K+ R++EAE+ F +ML++GI PDE+ + MIN Y +N + EA +L E++ +
Sbjct: 586 SSIIGSLGKQGRVVEAEETFAKMLESGIQPDEIAYMIMINTYARNGRIDEANELVEEVVK 645
Query: 569 NSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEF 628
+ ++P S+ YT LISG VK GM++ GC YLD+ML DG PNVVLYTALI HFL+ G+F+F
Sbjct: 646 HFLRPSSFTYTVLISGFVKMGMMEKGCQYLDKMLEDGLSPNVVLYTALIGHFLKKGDFKF 705
Query: 629 ASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTL 688
+ L LM N I+ D IAYI L+SG+ R + +KK + + GKE L +L +
Sbjct: 706 SFTLFGLMGENDIKHDHIAYITLLSGLWRAMARKKKRQVI---VEPGKEKLLQRL----I 758
Query: 689 VTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHF 748
T+ + S++ + G K +++ KVK +PNLYL+N I C GR+D+AY+H
Sbjct: 759 RTKPLVSIPSSLGNYGSKSFAMEVIGKVKK-SIIPNLYLHNTIITGYCAAGRLDEAYNHL 817
Query: 749 QMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQA 808
+ M++EG+ PN VT+ IL+ HI AG+I+ AI LF N C PD+ +Y+TLLKGLC
Sbjct: 818 ESMQKEGIVPNLVTYTILMKSHIEAGDIESAIDLFEGTN---CEPDQVMYSTLLKGLCDF 874
Query: 809 GRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNC 868
R ++ M K G P K +YE LL+C C + L++ A + K+M D P N
Sbjct: 875 KRPLDALALMLEMQKSGINPNKDSYEKLLQCLCYSRLTMEAVKVVKDMAALDIWPRSINH 934
Query: 869 NWLLNILCQEKHFHEAQIVLDVMHKRGR--LPCT 900
WL+ ILC+EK EA+ + +M + GR L CT
Sbjct: 935 TWLIYILCEEKKLREARALFAIMVQSGRSLLNCT 968
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (552), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 191/756 (25%), Positives = 328/756 (43%), Gaps = 79/756 (10%)
Query: 150 EVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREM-ESQGFYVDKLMYTS 208
+ LE+ N MRK+ G L Y+S+ L + E +M E+ G ++ + +Y
Sbjct: 22 KALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVG 81
Query: 209 LINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWG 268
+ Y ++ A+ +F RM CEP ++ N ++ G FD+ +Y +M D G
Sbjct: 82 AMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRG 141
Query: 269 FQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVD 328
P++ + I + ++C+ AAL LLN+ S +V Y ++ Y+ N E
Sbjct: 142 ITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGY 201
Query: 329 ELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLN 388
EL+ KMLA+ V+ LL+ + +++ LL + K G L + L
Sbjct: 202 ELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGV----LPNLFTYNLF 257
Query: 389 PTGDLCQEIEL-----LLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFG 443
G LCQ EL ++ +++ PK + + I LCK K+++A V L ++VN G
Sbjct: 258 IQG-LCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEG 316
Query: 444 YRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKP 503
P +T NTLI G CK G + A I+ G P
Sbjct: 317 LEPDSYTYNTLIA----------------------GYCKGGMVQLAERIVGDAVFNGFVP 354
Query: 504 SVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLF 563
Y ++I LC E A +F L GI P+ + + T+I G +EA QL
Sbjct: 355 DQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLA 414
Query: 564 EKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRA 623
+M E + P + L++GL K G V + M++ G+ P++ + LI+ +
Sbjct: 415 NEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQ 474
Query: 624 GEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKL 683
+ E A + ++M+ N ++ D+ Y +L++G+C+ K+ DV ++ K M+
Sbjct: 475 LKMENALEILDVMLDNGVDPDVYTYNSLLNGLCK----TSKFEDV---METYKTMV---- 523
Query: 684 QQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDD 743
+KG PNL+ +N + LC ++D+
Sbjct: 524 ---------------------EKGCA-------------PNLFTFNILLESLCRYRKLDE 549
Query: 744 AYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKT-VYNTLL 802
A + MK + + P+ VTF LI+G G++D A LF +M V T YN ++
Sbjct: 550 ALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIII 609
Query: 803 KGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHV 862
+ ++ +F M R P TY +++ FC + EM+ + +
Sbjct: 610 HAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFI 669
Query: 863 PCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRLP 898
P L+ ++N LC E +EA ++ M ++G +P
Sbjct: 670 PSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVP 705
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 159/571 (27%), Positives = 253/571 (44%), Gaps = 22/571 (3%)
Query: 56 IKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLE 115
++F S++A+ G IE+AL R++ + P +++ L KF E
Sbjct: 326 LRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHE 385
Query: 116 AFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175
A F ++ G+ N +Y++LID C +G LD L + M GL +++PY SL
Sbjct: 386 AELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEM-VDTGLKLSVYPYNSLI 444
Query: 176 YALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCE 235
CK AE F EM ++ + YTSL+ GYCS + A+RL+ M G
Sbjct: 445 NGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIA 504
Query: 236 PDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALML 295
P YT TL+ G F+ GL L+++M++W +PN VT +MI YC EG++ A
Sbjct: 505 PSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEF 564
Query: 296 LNSKVSSNLAPSVHCYTVLIDALYKHNRLME----VDELYKKMLANRVAPDHLLSFILLK 351
L + P + Y LI L + E VD L+K N + + +L
Sbjct: 565 LKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHK---GNCELNEICYTGLLHG 621
Query: 352 NCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKL 411
C EG +L+ AL + E + G +D + + + + LL+++ K
Sbjct: 622 FCREG-KLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKP 680
Query: 412 ANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIV 471
+V +T I A K G +++A+ ++N G P T +I + GF+ A +
Sbjct: 681 DDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLC 740
Query: 472 ELMQDTEGNCKWGNLDSALDILDQMEV-------------RGPKPSVAIYDAIIGHLCKE 518
MQ LDIL + EV +G + A Y+ +I C++
Sbjct: 741 SKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQ 800
Query: 519 KRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPY 578
RI EA ++ RM+ G+ PD + +TTMIN + +A +L+ M E ++P Y
Sbjct: 801 GRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAY 860
Query: 579 TALISGLVKKGMVDLGCMYLDRMLADGFVPN 609
LI G G + + ML G +PN
Sbjct: 861 NTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (527), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 175/764 (22%), Positives = 317/764 (41%), Gaps = 115/764 (15%)
Query: 72 FVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIK-ICNAGVDL 130
F ALGN+ I K +A +L+GL A+++ +A D ++ + G
Sbjct: 107 FAALGNV----------IKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIP 156
Query: 131 NCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKG--LVPALHPYKSLFYALCKNIRTVEAE 188
N +SYN+L+ GLC + E LE++++M +G P + Y ++ K + +A
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216
Query: 189 SFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGF 248
S EM +G D + Y S+I C + M AM + M+K G PD T N+++HG+
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276
Query: 249 FKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSV 308
G + +M G +P++VT +++ C+ G A + +S L P +
Sbjct: 277 CSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEI 336
Query: 309 HCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCE 368
Y L+ L+E+ L M+ N + PDH + IL+ + ++ A+++ +
Sbjct: 337 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSK 396
Query: 369 FAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGK 428
+ G LNP V + I LCK G+
Sbjct: 397 MRQQG-------------LNPNA----------------------VTYGAVIGILCKSGR 421
Query: 429 YEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDS 488
E A + Q+++ G P N+LI G C +
Sbjct: 422 VEDAMLYFEQMIDEGLSPGNIVYNSLI----------------------HGLCTCNKWER 459
Query: 489 ALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMIN 548
A +++ +M RG + +++II CKE R++E+E +F+ M++ G+ P+ + + T+IN
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLIN 519
Query: 549 GYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVP 608
GY K EA +L M ++P + Y+ LI+G K ++ + M + G P
Sbjct: 520 GYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSP 579
Query: 609 NVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDV 668
+++ Y ++ + A L + + + +L Y ++ G+C+
Sbjct: 580 DIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCK----------- 628
Query: 669 NRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLY 728
N+ +D +M F N L + D++ +
Sbjct: 629 NKLTDDALQM----------------------FQN----------LCLMDLKLEAR--TF 654
Query: 729 NDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNA 788
N + L VGR D+A D F GL PN T+ ++ I G +++ LF M
Sbjct: 655 NIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMED 714
Query: 789 DGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKAT 832
+GC D + N +++ L Q G ++ + + ++ F + +T
Sbjct: 715 NGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEAST 758
|
Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 203 bits (517), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 200/881 (22%), Positives = 341/881 (38%), Gaps = 111/881 (12%)
Query: 59 GQSQSALL--LYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEA 116
G+S +L + + ++A G IE+A+ F + +VP C +L L +
Sbjct: 146 GKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLF 205
Query: 117 FDYFIKICNAGVDLNCWSYNVLIDGLCYKG---------------FLDEVLEVVNIMRKK 161
+D + + V + +Y++LI C G F L V ++ K
Sbjct: 206 WDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLK 265
Query: 162 -----KGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSN 216
KGLVP + Y L LCK R +A+S EM+S G +D Y+ LI+G
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG 325
Query: 217 RNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTD 276
RN A L M+ G Y + I K G+ +K L+ M G P
Sbjct: 326 RNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385
Query: 277 LIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLA 336
+I YCRE V LL N+ S + Y ++ + L + K+M+A
Sbjct: 386 ASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIA 445
Query: 337 NRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQE 396
+ P+ ++ L+K + + A+ +L E + G D
Sbjct: 446 SGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFC---------------- 489
Query: 397 IELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIK 456
+ I L K + ++A L ++V G +P FT I
Sbjct: 490 -------------------YNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFIS 530
Query: 457 CFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLC 516
+ + A+ V+ M++ G P+ + +I C
Sbjct: 531 GYIEASEFASADKYVKEMREC----------------------GVLPNKVLCTGLINEYC 568
Query: 517 KEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSY 576
K+ +++EA ++ M+ GI D +T ++NG +N K +A ++F +M+ + P +
Sbjct: 569 KKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVF 628
Query: 577 PYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLM 636
Y LI+G K G + D M+ +G PNV++Y L+ F R+GE E A L + M
Sbjct: 629 SYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEM 688
Query: 637 VTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSG---KEMLFHKLQQGTLVTRTK 693
+ + + Y ++ G C+ + + + G ++ L G
Sbjct: 689 SVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDV 748
Query: 694 STAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIF------LLLCGVGR-MDDAYD 746
A + +F KKG P L N +F L + R MD ++D
Sbjct: 749 ERAIT-IFGTNKKGCASSTA---------PFNALINWVFKFGKTELKTEVLNRLMDGSFD 798
Query: 747 HFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLC 806
F +PN VT+ I+I+ G ++ A LF+QM +P Y +LL G
Sbjct: 799 RFG-------KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYD 851
Query: 807 QAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVP--- 863
+ GR + +F VF G P Y ++ F ++ A + +M + V
Sbjct: 852 KMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGC 911
Query: 864 --CLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRLPCTST 902
+S C LL+ + A+ V++ M + +P ++T
Sbjct: 912 KLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSAT 952
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 176/732 (24%), Positives = 307/732 (41%), Gaps = 71/732 (9%)
Query: 135 YNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREM 194
YN L++ L G +DE+ +V M + K + P ++ Y + CK EA + ++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDK-VCPNIYTYNKMVNGYCKLGNVEEANQYVSKI 244
Query: 195 ESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLF 254
G D YTSLI GYC +++ A ++F M GC + LIHG
Sbjct: 245 VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRI 304
Query: 255 DKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVL 314
D+ L+ +M D P + T ++I + C AL L+ + + P++H YTVL
Sbjct: 305 DEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVL 364
Query: 315 IDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGC 374
ID+L + + EL +ML + P+ + L+ C+ I
Sbjct: 365 IDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALING-------------YCKRGMIED 411
Query: 375 GIDPLARSISATLNPTGDLCQEI-----------------ELLLRKIVKSDPKLANVAFT 417
+D + S L+P E+ ++L RK++ P + V +
Sbjct: 412 AVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVL---PDV--VTYN 466
Query: 418 IYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDT 477
I C+ G ++ AY L + + G P +T ++I
Sbjct: 467 SLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSL------------------- 507
Query: 478 EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGID 537
CK ++ A D+ D +E +G P+V +Y A+I CK ++ EA M ++ML
Sbjct: 508 ---CKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCL 564
Query: 538 PDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMY 597
P+ + F +I+G + K EA L EKM + +QP T LI L+K G D
Sbjct: 565 PNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSR 624
Query: 598 LDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCR 657
+ML+ G P+ YT I + R G A + M N + DL Y +L+ G
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGD 684
Query: 658 RITGRKKWLDVNRCSDSGKE--------MLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTV 709
+ + R D+G E ++ H L+ + A+ + + TV
Sbjct: 685 LGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTV 744
Query: 710 QKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRM---DDAYDHFQMMKREGLRPNQVTFCIL 766
+++ K+ + PN Y + L +C VG + + +DH Q + EG+ P+++ F L
Sbjct: 745 VELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQ--RNEGISPSELVFNAL 802
Query: 767 INGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGF 826
++ + ++A + + M G +P L+ GL + G SVF ++ + G+
Sbjct: 803 LSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGY 862
Query: 827 VPKKATYEHLLE 838
+ ++ +++
Sbjct: 863 YEDELAWKIIID 874
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (499), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 155/612 (25%), Positives = 253/612 (41%), Gaps = 69/612 (11%)
Query: 222 AMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMIS 281
A+ LF M+K+ P + L+ KM FD L QM + G N+ T I+I+
Sbjct: 65 AVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILIN 124
Query: 282 NYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAP 341
+CR ++ AL +L + P + L++ NR+ + L +M+ P
Sbjct: 125 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQP 184
Query: 342 DHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISAT-LNPTGDLCQEIELL 400
D L+ A+ L+ GC D + I L GD+ + LL
Sbjct: 185 DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLL 244
Query: 401 LRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQ 460
+K+ + + V + I ALC A ++ N G RP V T N+LI+C
Sbjct: 245 -KKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL-- 301
Query: 461 VGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKR 520
C +G A +L M R P+V + A+I KE +
Sbjct: 302 --------------------CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 341
Query: 521 ILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTA 580
++EAE ++ M+K IDPD ++++ING+ + + EA +FE M P Y
Sbjct: 342 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 401
Query: 581 LISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQ 640
LI G K VD G M G V N V YT LI+ F +A E + A + MV++
Sbjct: 402 LIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDG 461
Query: 641 IEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAV 700
+ D++ Y L+ G+C
Sbjct: 462 VLPDIMTYSILLDGLC-------------------------------------------- 477
Query: 701 FSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQ 760
+NGK T + ++ + P++Y YN + +C G+++D +D F + +G++PN
Sbjct: 478 -NNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV 536
Query: 761 VTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYS 820
VT+ +++G G ++A LF +M +G +PD YNTL++ + G + +
Sbjct: 537 VTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIRE 596
Query: 821 MHKRGFVPKKAT 832
M FV +T
Sbjct: 597 MRSCRFVGDAST 608
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 141/488 (28%), Positives = 232/488 (47%), Gaps = 41/488 (8%)
Query: 413 NVA-FTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIV 471
NVA + I I +C+ G+ ++A+ L + GY P V + +T++
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVV---------------- 288
Query: 472 ELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRM 531
G C++G LD +++ M+ +G KP+ IY +IIG LC+ ++ EAE+ F M
Sbjct: 289 ------NGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEM 342
Query: 532 LKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKG-M 590
++ GI PD V +TT+I+G+ + A + F +M + P YTA+ISG + G M
Sbjct: 343 IRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 402
Query: 591 VDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIA 650
V+ G ++ + M G P+ V +T LIN + +AG + A R+ N M+ +++ Y
Sbjct: 403 VEAGKLFHE-MFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTT 461
Query: 651 LVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQ 710
L+ G+C+ D++ ++ EM LQ T S V K G ++
Sbjct: 462 LIDGLCKE-------GDLDSANELLHEMWKIGLQPNIF------TYNSIVNGLCKSGNIE 508
Query: 711 KIVLKVKDIE---FMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILI 767
+ V V + E + Y + C G MD A + + M +GL+P VTF +L+
Sbjct: 509 EAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLM 568
Query: 768 NGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFV 827
NG G ++ L N M A G P+ T +N+L+K C L +++ M RG
Sbjct: 569 NGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVG 628
Query: 828 PKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIV 887
P TYE+L++ C A+ +F+EM +S + L+ + K F EA+ V
Sbjct: 629 PDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREV 688
Query: 888 LDVMHKRG 895
D M + G
Sbjct: 689 FDQMRREG 696
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 170/714 (23%), Positives = 306/714 (42%), Gaps = 44/714 (6%)
Query: 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMS 265
YT+LI + + + M + LF +M + G EP + TLI GF K G D L +M
Sbjct: 171 YTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMK 230
Query: 266 DWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLM 325
++V + I ++ + G+VD A + ++ L P YT +I L K NRL
Sbjct: 231 SSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLD 290
Query: 326 EVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARS-IS 384
E E+++ + NR P ++ + A LL G +A + I
Sbjct: 291 EAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCIL 350
Query: 385 ATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGY 444
L G + + +++ + P L+ + I I LC+ GK + A+ + G
Sbjct: 351 TCLRKMGKVDEALKVFEEMKKDAAPNLS--TYNILIDMLCRAGKLDTAFELRDSMQKAGL 408
Query: 445 RPLVFTCNTLIKCFYQVGFLEGANAIVELMQDT-------------EGNCKWGNLDSALD 491
P V T N ++ + L+ A A+ E M +G K G +D A
Sbjct: 409 FPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYK 468
Query: 492 ILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYL 551
+ ++M + + +Y ++I + R + ++K M+ PD T ++
Sbjct: 469 VYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMF 528
Query: 552 QNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVV 611
+ +P + +FE++K P + Y+ LI GL+K G + M G V +
Sbjct: 529 KAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTR 588
Query: 612 LYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRC 671
Y +I+ F + G+ A +L M T E ++ Y +++ G+ + ++R
Sbjct: 589 AYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAK----------IDRL 638
Query: 672 SDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSN-GKKGTVQKIVLKVKDI---EFMPNLYL 727
++ MLF + + + +S++ GK G + + L ++++ PNLY
Sbjct: 639 DEA--YMLFEEAKSKRI--ELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYT 694
Query: 728 YNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMN 787
+N + L +++A FQ MK PNQVT+ ILING + ++A + +M
Sbjct: 695 WNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQ 754
Query: 788 ADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSI 847
G P Y T++ GL +AG ++ ++F G VP A Y ++E ++
Sbjct: 755 KQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAM 814
Query: 848 PAFNMFKE-----MIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGR 896
AF++F+E + +H+ C LL+ L + +A IV V+ + G+
Sbjct: 815 DAFSLFEETRRRGLPIHNKT-----CVVLLDTLHKNDCLEQAAIVGAVLRETGK 863
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 194 bits (492), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 151/627 (24%), Positives = 257/627 (40%), Gaps = 102/627 (16%)
Query: 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMS 265
+ L++ + + L RM D Y+ N LI+ F + + +M
Sbjct: 83 FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 142
Query: 266 DWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLM 325
G++P++VT +++ YC + A+ L++ P+ + LI L+ HN+
Sbjct: 143 KLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKAS 202
Query: 326 EVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISA 385
E L +M+A PD L ++ GT + LC+ I +
Sbjct: 203 EAVALIDRMVARGCQPD-LFTY--------GTVVNG----LCKRGDIDLALS-------- 241
Query: 386 TLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYR 445
LL+K+ K + V +T I ALC A ++ N G R
Sbjct: 242 --------------LLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIR 287
Query: 446 PLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSV 505
P V T N+LI+C C +G A +L M R P+V
Sbjct: 288 PNVVTYNSLIRCL----------------------CNYGRWSDASRLLSDMIERKINPNV 325
Query: 506 AIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEK 565
+ A+I KE +++EAE ++ M+K IDPD ++++ING+ + + EA +FE
Sbjct: 326 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 385
Query: 566 MKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGE 625
M P Y LI G K V+ G M G V N V Y LI +AG+
Sbjct: 386 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 445
Query: 626 FEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQ 685
+ A ++ MV++ + D+I Y L+ G+C+ + KL++
Sbjct: 446 CDMAQKIFKKMVSDGVPPDIITYSILLDGLCK----------------------YGKLEK 483
Query: 686 GTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAY 745
+ VF +K ++ P++Y YN + +C G+++D +
Sbjct: 484 ALV-----------VFEYLQKSKME------------PDIYTYNIMIEGMCKAGKVEDGW 520
Query: 746 DHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGL 805
D F + +G++PN + + +I+G G ++A LF +M DG +P+ YNTL++
Sbjct: 521 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRAR 580
Query: 806 CQAGRLSHVFSVFYSMHKRGFVPKKAT 832
+ G + + M GFV +T
Sbjct: 581 LRDGDKAASAELIKEMRSCGFVGDAST 607
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 918 | ||||||
| 359490245 | 1101 | PREDICTED: pentatricopeptide repeat-cont | 0.978 | 0.815 | 0.523 | 0.0 | |
| 296084128 | 970 | unnamed protein product [Vitis vinifera] | 0.771 | 0.729 | 0.549 | 0.0 | |
| 297797201 | 983 | pentatricopeptide repeat-containing prot | 0.960 | 0.897 | 0.388 | 0.0 | |
| 15241801 | 982 | pentatricopeptide repeat-containing prot | 0.960 | 0.898 | 0.390 | 1e-180 | |
| 224132330 | 893 | predicted protein [Populus trichocarpa] | 0.867 | 0.891 | 0.399 | 1e-176 | |
| 449460864 | 693 | PREDICTED: pentatricopeptide repeat-cont | 0.679 | 0.900 | 0.488 | 1e-169 | |
| 449499684 | 693 | PREDICTED: pentatricopeptide repeat-cont | 0.679 | 0.900 | 0.487 | 1e-168 | |
| 357140804 | 926 | PREDICTED: pentatricopeptide repeat-cont | 0.901 | 0.894 | 0.367 | 1e-149 | |
| 17047023 | 949 | Putative PPR-repeat protein [Oryza sativ | 0.893 | 0.864 | 0.338 | 1e-135 | |
| 125573832 | 906 | hypothetical protein OsJ_30529 [Oryza sa | 0.864 | 0.876 | 0.332 | 1e-127 |
| >gi|359490245|ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containing protein At5g62370-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/931 (52%), Positives = 634/931 (68%), Gaps = 33/931 (3%)
Query: 1 DQLINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQ 60
D+LI RG+++ QQV++R+I S S+SDA+ A +FAA RG+ DS Y L++KL+ G+
Sbjct: 48 DRLIRRGVLSLGQQVVRRMIKQSPSVSDAILAVEFAAARGLELDSCGYGVLLRKLVGSGE 107
Query: 61 SQSALLLYQNDFVA-------------------LGNIEDALRHFDRLISKNIVPIKLACV 101
+ A +Y++ +A LG +E+A+ HFDRL + P K AC
Sbjct: 108 HRFAEAVYRDYVIARGIIPDSETLNSMVICYCNLGKLEEAMAHFDRLFEVDSFPCKPACN 167
Query: 102 SILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKK 161
++LR L A E+ LEAFDYF++I + G+ + W +N LIDGLC KG +DE + + MR++
Sbjct: 168 AMLRELCARERVLEAFDYFVRINDVGILMGLWCFNRLIDGLCDKGHVDEAFYMFDTMRER 227
Query: 162 KGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKM 221
GL +H YK+LFY LC+ R EAE F EMES+G ++DK+MYTSLI+GYC + M+
Sbjct: 228 TGLPATIHLYKTLFYGLCRQERVEEAELFVGEMESEGHFIDKMMYTSLIHGYCRGKKMRT 287
Query: 222 AMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMIS 281
AMR+F RMLK GC+PD+YT NTLIHGF K+GLFDKGW+L++QMS+WG QPN+VT IMI
Sbjct: 288 AMRVFLRMLKMGCDPDTYTYNTLIHGFVKLGLFDKGWILHNQMSEWGLQPNVVTYHIMIR 347
Query: 282 NYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAP 341
YC EG+VD AL LL+S S NL PSVH YTVLI ALYK NRL+EV+ELYKKML V P
Sbjct: 348 RYCEEGKVDCALTLLSSMSSFNLTPSVHSYTVLITALYKENRLVEVEELYKKMLDIGVVP 407
Query: 342 DHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLL 401
DH+L F L++ P+G EL AL +L AK GC +D S SAT +PT D+ QEIE LL
Sbjct: 408 DHVLFFTLMQKQPKGHELHLALKILQAIAKNGCNLDLCLLSTSATHSPTQDVEQEIECLL 467
Query: 402 RKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQV 461
+IV+ + LA+VAF I+ISALC GK + A + + ++V+ G RPL+ T N+LIKC +Q
Sbjct: 468 GEIVRRNFALADVAFGIFISALCAAGKTDAALLFMDKMVSLGCRPLLSTYNSLIKCLFQE 527
Query: 462 GFLEGANAIVELMQD-------------TEGNCKWGNLDSALDILDQMEVRGPKPSVAIY 508
+E A ++++LMQ+ +C G+L SA +LDQM RG KPSVAIY
Sbjct: 528 RLVEDAKSLIDLMQENGIVPDLATYLIMVHEHCNHGDLASAFGLLDQMNERGLKPSVAIY 587
Query: 509 DAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKE 568
D+IIG L + KRILEAE++FK ML+AG+DPD + + TMI+GY +NR+ IEA QLF+KM E
Sbjct: 588 DSIIGCLSRRKRILEAENVFKMMLEAGVDPDAIIYVTMISGYSKNRRAIEARQLFDKMIE 647
Query: 569 NSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEF 628
+ QP S+ YTA+ISGLVK+ M+D GC YL ML DGFVPN VLYT+LIN FLR GE EF
Sbjct: 648 HGFQPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFVPNTVLYTSLINQFLRKGELEF 707
Query: 629 ASRLENLMVTNQIEFDLIAYIALVSGVCRRITG-RKKWLDVNRCSDSGKEMLFHKLQQGT 687
A RL +LM NQIE D+I IALVSGV R IT R++W V S +E+L H L Q
Sbjct: 708 AFRLVDLMDRNQIECDMITCIALVSGVSRNITPVRRRWYHVKSGSARVREILLHLLHQSF 767
Query: 688 LVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDH 747
++ R + +F K ++ K+K FMPNLYLYN I C + DAY+H
Sbjct: 768 VIPRENNLSFPRGSPRKIKYFALNLMQKIKGSSFMPNLYLYNGIISGFCRANMIQDAYNH 827
Query: 748 FQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQ 807
F++M+ EG+ PNQVTF ILINGH GEID AIGLFN+MNADG PD YN L+KGLC+
Sbjct: 828 FELMQTEGVCPNQVTFTILINGHTRFGEIDHAIGLFNKMNADGLAPDGITYNALIKGLCK 887
Query: 808 AGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSN 867
AGRL SV ++MHKRG P K++YE LL+C CA+ L + AF +F+EM+ HD+VPC N
Sbjct: 888 AGRLLDALSVSHTMHKRGLFPNKSSYEKLLKCLCASHLGVHAFKIFEEMLSHDYVPCWYN 947
Query: 868 CNWLLNILCQEKHFHEAQIVLDVMHKRGRLP 898
CNWLL ILC+E +HEA IV DVM K+ + P
Sbjct: 948 CNWLLCILCEEHRWHEAHIVFDVMLKQRKYP 978
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084128|emb|CBI24516.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/722 (54%), Positives = 502/722 (69%), Gaps = 14/722 (1%)
Query: 138 LIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQ 197
LIDGLC KG +DE + + MR++ GL +H YK+LFY LC+ R EAE F EMES+
Sbjct: 84 LIDGLCDKGHVDEAFYMFDTMRERTGLPATIHLYKTLFYGLCRQERVEEAELFVGEMESE 143
Query: 198 GFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKG 257
G ++DK+MYTSLI+GYC + M+ AMR+F RMLK GC+PD+YT NTLIHGF K+GLFDKG
Sbjct: 144 GHFIDKMMYTSLIHGYCRGKKMRTAMRVFLRMLKMGCDPDTYTYNTLIHGFVKLGLFDKG 203
Query: 258 WVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDA 317
W+L++QMS+WG QPN+VT IMI YC EG+VD AL LL+S S NL PSVH YTVLI A
Sbjct: 204 WILHNQMSEWGLQPNVVTYHIMIRRYCEEGKVDCALTLLSSMSSFNLTPSVHSYTVLITA 263
Query: 318 LYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGID 377
LYK NRL+EV+ELYKKML V PDH+L F L++ P+G EL AL +L AK GC +D
Sbjct: 264 LYKENRLVEVEELYKKMLDIGVVPDHVLFFTLMQKQPKGHELHLALKILQAIAKNGCNLD 323
Query: 378 PLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLF 437
S SAT +PT D+ QEIE LL +IV+ + LA+VAF I+ISALC GK + A + +
Sbjct: 324 LCLLSTSATHSPTQDVEQEIECLLGEIVRRNFALADVAFGIFISALCAAGKTDAALLFMD 383
Query: 438 QLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQD-------------TEGNCKWG 484
++V+ G RPL+ T N+LIKC +Q +E A ++++LMQ+ +C G
Sbjct: 384 KMVSLGCRPLLSTYNSLIKCLFQERLVEDAKSLIDLMQENGIVPDLATYLIMVHEHCNHG 443
Query: 485 NLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFT 544
+L SA +LDQM RG KPSVAIYD+IIG L + KRILEAE++FK ML+AG+DPD + +
Sbjct: 444 DLASAFGLLDQMNERGLKPSVAIYDSIIGCLSRRKRILEAENVFKMMLEAGVDPDAIIYV 503
Query: 545 TMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLAD 604
TMI+GY +NR+ IEA QLF+KM E+ QP S+ YTA+ISGLVK+ M+D GC YL ML D
Sbjct: 504 TMISGYSKNRRAIEARQLFDKMIEHGFQPSSHSYTAVISGLVKENMIDKGCSYLSDMLKD 563
Query: 605 GFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITG-RK 663
GFVPN VLYT+LIN FLR GE EFA RL +LM NQIE D+I IALVSGV R IT R+
Sbjct: 564 GFVPNTVLYTSLINQFLRKGELEFAFRLVDLMDRNQIECDMITCIALVSGVSRNITPVRR 623
Query: 664 KWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMP 723
+W V S +E+L H L Q ++ R + +F K ++ K+K FMP
Sbjct: 624 RWYHVKSGSARVREILLHLLHQSFVIPRENNLSFPRGSPRKIKYFALNLMQKIKGSSFMP 683
Query: 724 NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLF 783
NLYLYN I C + DAY+HF++M+ EG+ PNQVTF ILINGH GEID AIGLF
Sbjct: 684 NLYLYNGIISGFCRANMIQDAYNHFELMQTEGVCPNQVTFTILINGHTRFGEIDHAIGLF 743
Query: 784 NQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCAN 843
N+MNADG PD YN L+KGLC+AGRL SV ++MHKRG P K++YE LL+C CA+
Sbjct: 744 NKMNADGLAPDGITYNALIKGLCKAGRLLDALSVSHTMHKRGLFPNKSSYEKLLKCLCAS 803
Query: 844 CL 845
L
Sbjct: 804 HL 805
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797201|ref|XP_002866485.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297312320|gb|EFH42744.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/934 (38%), Positives = 541/934 (57%), Gaps = 52/934 (5%)
Query: 2 QLINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQS 61
+L RGL+ SA++VI+R+I +S+S+A S ADFA G+ DS AL++KL + GQ
Sbjct: 53 KLGRRGLVNSAREVIRRVIDGCSSISEAASVADFAVNNGIELDSCCCGALIRKLTEMGQP 112
Query: 62 QSALLLYQNDFVALGNIED-------------------ALRHFDRLISKNIVPIKLACVS 102
A Y + G + D A H DR+I+ P + +
Sbjct: 113 GLAETFYNQRVIGNGIVPDSSVLDSMVFCLVKLRRFDEARAHLDRIIASGYAPSRDSSSL 172
Query: 103 ILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKK 162
++ L +++FLEAF F ++ G L W L GLC G LDE + +++ + +
Sbjct: 173 VVDELCNQDRFLEAFHCFEQVKERGSGLWLWCCKRLFKGLCGHGHLDEAIGMLDTLCEMT 232
Query: 163 GLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMA 222
+ ++ YKSLFY C+ EAE+ ME G++VDK+MYT L+ YC + NM MA
Sbjct: 233 RMPLPVNLYKSLFYCFCRRGCAAEAEALFDHMEVDGYFVDKVMYTCLMREYCKDNNMTMA 292
Query: 223 MRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISN 282
MRL+ RM++ CE D NTLIHGF K+G+ DKG V++SQM G Q N+ T +MI +
Sbjct: 293 MRLYLRMVERSCELDPCIFNTLIHGFMKLGMLDKGRVMFSQMIKRGVQSNVFTYHVMIGS 352
Query: 283 YCREGEVDAALMLL-NSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAP 341
YC+EG VD AL L N+ +++ +VHCYT LI YK + + +L +ML N + P
Sbjct: 353 YCKEGNVDYALRLFENNTGVEDISRNVHCYTTLISGFYKKGGMDKAVDLLMRMLDNGIVP 412
Query: 342 DHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLL 401
DH+ F+LLK P+ EL++A+++L GCGIDP ++ G++ ++E LL
Sbjct: 413 DHITYFVLLKMLPKCHELKYAMVILQSILDNGCGIDP------PVIDDLGNIEVKVESLL 466
Query: 402 RKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQV 461
+I + D LA V + +ALC Y A + ++VN G PL F+ N++IKC +Q
Sbjct: 467 EEIARKDANLAAVGLAVVTTALCSQRNYIAALSRIEKMVNLGCTPLPFSYNSVIKCLFQE 526
Query: 462 GFLEGANAIVELMQDTE-------------GNCKWGNLDSALDILDQMEVRGPKPSVAIY 508
+E ++V L+Q+ + CK + D+A ++D ME G +P+VAIY
Sbjct: 527 NIIEDLGSLVNLIQELDFVPDVDTYLIVVNELCKNNDRDAAFSVIDVMEELGLRPTVAIY 586
Query: 509 DAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKE 568
+IIG L K+ R++EAE+ F +ML++GI PDE+ + MIN Y +N + EA +L E++ +
Sbjct: 587 SSIIGSLGKQGRVVEAEETFAKMLESGIQPDEIAYMIMINAYARNGRIDEANELVEEVVK 646
Query: 569 NSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEF 628
+ V+P S+ YT LISG VK GM++ GC YLD+ML DG PN VLYT+LI HFL+ G+F+F
Sbjct: 647 HFVRPSSFTYTVLISGFVKMGMMEKGCQYLDKMLEDGLSPNAVLYTSLIGHFLKKGDFKF 706
Query: 629 ASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTL 688
+ L LM N I+ D IAYI L+SG+ R + +KK + + GKE L +L Q
Sbjct: 707 SFTLFGLMGENGIKHDHIAYITLLSGLWRAMARKKKRQVI---VEPGKEKLLQRLLQ--- 760
Query: 689 VTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHF 748
T+ + S++ + G K +++ KVK +PNLYL+N I C GR+D+AY+H
Sbjct: 761 -TKPIVSISSSLCNYGSKSFAMEVIGKVKK-SIIPNLYLHNTIVTGYCAAGRLDEAYNHL 818
Query: 749 QMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQA 808
+ M++EG+ PNQVT+ IL+ HI AG+I+ AI LF + C PD+ + +TLLKGLC++
Sbjct: 819 ESMQKEGIVPNQVTYTILMKSHIEAGDIESAIDLFEETK---CEPDQVMCSTLLKGLCES 875
Query: 809 GRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNC 868
R ++ M K+G P K +YE LL+C C + L++ AF + K+M D P N
Sbjct: 876 ERPLDALALMLEMQKKGIYPNKDSYEKLLQCLCYSRLTMEAFKVVKDMAALDIWPRSINH 935
Query: 869 NWLLNILCQEKHFHEAQIVLDVMHKRGR--LPCT 900
WL+ ILC+EK EA+ + +M + GR L CT
Sbjct: 936 TWLIYILCEEKKLREARALFAIMVQSGRSLLNCT 969
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241801|ref|NP_201043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75180621|sp|Q9LVA2.1|PP443_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g62370 gi|8809650|dbj|BAA97201.1| unnamed protein product [Arabidopsis thaliana] gi|332010218|gb|AED97601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 365/934 (39%), Positives = 539/934 (57%), Gaps = 52/934 (5%)
Query: 2 QLINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQS 61
+L RGL+ SA++VI+R+I S+S+S+A ADFA G+ DS Y AL++KL + GQ
Sbjct: 52 KLGRRGLLDSAREVIRRVIDGSSSISEAALVADFAVDNGIELDSSCYGALIRKLTEMGQP 111
Query: 62 QSALLLYQNDFVALGNIED-------------------ALRHFDRLISKNIVPIKLACVS 102
A Y + G + D A H DR+I+ P + +
Sbjct: 112 GVAETFYNQRVIGNGIVPDSSVLDSMVFCLVKLRRFDEARAHLDRIIASGYAPSRNSSSL 171
Query: 103 ILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKK 162
++ L +++FLEAF F ++ G L W L GLC G L+E + +++ +
Sbjct: 172 VVDELCNQDRFLEAFHCFEQVKERGSGLWLWCCKRLFKGLCGHGHLNEAIGMLDTLCGMT 231
Query: 163 GLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMA 222
+ ++ YKSLFY CK EAE+ ME G+YVDK+MYT L+ YC + NM MA
Sbjct: 232 RMPLPVNLYKSLFYCFCKRGCAAEAEALFDHMEVDGYYVDKVMYTCLMKEYCKDNNMTMA 291
Query: 223 MRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISN 282
MRL+ RM++ E D NTLIHGF K+G+ DKG V++SQM G Q N+ T IMI +
Sbjct: 292 MRLYLRMVERSFELDPCIFNTLIHGFMKLGMLDKGRVMFSQMIKKGVQSNVFTYHIMIGS 351
Query: 283 YCREGEVDAALML-LNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAP 341
YC+EG VD AL L +N+ S +++ +VHCYT LI YK + + +L +ML N + P
Sbjct: 352 YCKEGNVDYALRLFVNNTGSEDISRNVHCYTNLIFGFYKKGGMDKAVDLLMRMLDNGIVP 411
Query: 342 DHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLL 401
DH+ F+LLK P+ EL++A+++L GCGI+P ++ G++ ++E LL
Sbjct: 412 DHITYFVLLKMLPKCHELKYAMVILQSILDNGCGINP------PVIDDLGNIEVKVESLL 465
Query: 402 RKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQV 461
+I + D LA V + +ALC Y A + ++VN G PL F+ N++IKC +Q
Sbjct: 466 GEIARKDANLAAVGLAVVTTALCSQRNYIAALSRIEKMVNLGCTPLPFSYNSVIKCLFQE 525
Query: 462 GFLEGANAIVELMQDTE-------------GNCKWGNLDSALDILDQMEVRGPKPSVAIY 508
+E ++V ++Q+ + CK + D+A I+D ME G +P+VAIY
Sbjct: 526 NIIEDLASLVNIIQELDFVPDVDTYLIVVNELCKKNDRDAAFAIIDAMEELGLRPTVAIY 585
Query: 509 DAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKE 568
+IIG L K+ R++EAE+ F +ML++GI PDE+ + MIN Y +N + EA +L E++ +
Sbjct: 586 SSIIGSLGKQGRVVEAEETFAKMLESGIQPDEIAYMIMINTYARNGRIDEANELVEEVVK 645
Query: 569 NSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEF 628
+ ++P S+ YT LISG VK GM++ GC YLD+ML DG PNVVLYTALI HFL+ G+F+F
Sbjct: 646 HFLRPSSFTYTVLISGFVKMGMMEKGCQYLDKMLEDGLSPNVVLYTALIGHFLKKGDFKF 705
Query: 629 ASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTL 688
+ L LM N I+ D IAYI L+SG+ R + +KK + + GKE L +L +
Sbjct: 706 SFTLFGLMGENDIKHDHIAYITLLSGLWRAMARKKKRQVI---VEPGKEKLLQRL----I 758
Query: 689 VTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHF 748
T+ + S++ + G K +++ KVK +PNLYL+N I C GR+D+AY+H
Sbjct: 759 RTKPLVSIPSSLGNYGSKSFAMEVIGKVKK-SIIPNLYLHNTIITGYCAAGRLDEAYNHL 817
Query: 749 QMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQA 808
+ M++EG+ PN VT+ IL+ HI AG+I+ AI LF N C PD+ +Y+TLLKGLC
Sbjct: 818 ESMQKEGIVPNLVTYTILMKSHIEAGDIESAIDLFEGTN---CEPDQVMYSTLLKGLCDF 874
Query: 809 GRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNC 868
R ++ M K G P K +YE LL+C C + L++ A + K+M D P N
Sbjct: 875 KRPLDALALMLEMQKSGINPNKDSYEKLLQCLCYSRLTMEAVKVVKDMAALDIWPRSINH 934
Query: 869 NWLLNILCQEKHFHEAQIVLDVMHKRGR--LPCT 900
WL+ ILC+EK EA+ + +M + GR L CT
Sbjct: 935 TWLIYILCEEKKLREARALFAIMVQSGRSLLNCT 968
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132330|ref|XP_002328242.1| predicted protein [Populus trichocarpa] gi|222837757|gb|EEE76122.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust.
Identities = 370/926 (39%), Positives = 510/926 (55%), Gaps = 130/926 (14%)
Query: 3 LINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQ 62
L+ RGL++SAQQV+QR IA+S ++ DA+SA +FA+ GM G L++KL+ G
Sbjct: 48 LLRRGLLSSAQQVVQRFIASSPTVHDAISAVEFASASGMDLGPGISGELIRKLVDLGHPL 107
Query: 63 SALLLYQNDFVA-------------------LGNIEDALRHFDRLI-SKNIVPIKLACVS 102
SA Y + VA LG ++DA++ FDR I S + + AC +
Sbjct: 108 SAREFYHDLVVARGIEPDSNIVNSLVICLAKLGKLDDAVKLFDRHIGSGDCLVSNAACST 167
Query: 103 ILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKK 162
IL+G + ++KF+EAFDYF++I +A V L W+YNVLIDGLC +G++ E +EV++IM +
Sbjct: 168 ILKGFYEQDKFVEAFDYFVRISDANVKLGMWAYNVLIDGLCQQGYVGEAIEVLDIMCRIT 227
Query: 163 GLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMA 222
GL P LH K+LFY LCK ++EAE EME+QGF+VDK+MYTSL+N Y ++ MKMA
Sbjct: 228 GLPPTLHMLKTLFYGLCKRGWSIEAEWIFEEMEAQGFFVDKVMYTSLMNAYGRDKKMKMA 287
Query: 223 MRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISN 282
+R++FRMLK G +PD TCNTLI+GF KMGLFDK WVLY+ M+D G QPN VT IMI N
Sbjct: 288 LRVYFRMLKNGYDPDICTCNTLIYGFSKMGLFDKAWVLYNLMNDLGIQPNEVTYSIMIHN 347
Query: 283 YCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPD 342
YC++G++D A+ LLNS NL P VHCYT ++ LYK NR +EVDE ++ML + + PD
Sbjct: 348 YCKKGKLDCAMSLLNSMAPCNLTPCVHCYTPIMVTLYKLNRCLEVDEWCERMLESGIVPD 407
Query: 343 HLLSFILLKNCPEGT--ELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELL 400
H+L F+L+KN P+G ELQ L++L AK GCG+D + + S +N T L QEIELL
Sbjct: 408 HVLFFVLMKNKPKGLGFELQLCLLMLQAIAKNGCGLDCSSLTNSDKINSTLALEQEIELL 467
Query: 401 LRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQ 460
LR+I +SD L NVA GG Y A
Sbjct: 468 LREIARSDLNLGNVA----------GGIYVSAL--------------------------- 490
Query: 461 VGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKR 520
C+ G +SALD L+ M G P + ++++I L ++
Sbjct: 491 --------------------CEGGKTESALDCLENMVNAGCVPLLFTFNSLIKRLFQDGL 530
Query: 521 ILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTA 580
+ + + + M GI P+ + M+N Y + A + E+M E ++P Y
Sbjct: 531 SEDVKSLIEIMQNWGISPNLETYLIMVNEYCKQEDLALAFGILEQMDEMGLKPSVAIYDC 590
Query: 581 LISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQ 640
+I+ L ++ + RML +G P+ V Y +IN + R G+ A L +M+ N
Sbjct: 591 IIACLSQQRRISEAETLFCRMLENGVDPDEVAYMTMINAYARNGKGVKALHLFEMMIKNA 650
Query: 641 IEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAV 700
I+ +Y ALV+G + + A
Sbjct: 651 IQPSSYSYTALVAG-------------------------------------NRRLSIEAH 673
Query: 701 FSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQ 760
N + G FMPNLYLYN C V ++DAY ++M+ EGL PN+
Sbjct: 674 AENKRTG-------------FMPNLYLYNVTVSGFCWVNLIEDAYHQLRLMQEEGLLPNE 720
Query: 761 VTFCILINGHIAAGEIDQAIGLFNQMNADGC-VPDKTVYNTLLKGLCQAGRLSHVFSVFY 819
VTF ILI H AGEID+AIGLFN+MNADGC PD+ YNTLLK LC++GR S+ +
Sbjct: 721 VTFTILIGAHGRAGEIDRAIGLFNRMNADGCSTPDRCTYNTLLKSLCRSGRELDALSLVH 780
Query: 820 SMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEK 879
++ KRGF P + YE FCA +SIPAF +F+EM+ + VP L N LL ILC+EK
Sbjct: 781 TISKRGFFPNRLAYEKSHHYFCAGHMSIPAFRIFEEMVACNLVPGLYRRNLLLYILCEEK 840
Query: 880 HFHEAQIVLDVMHKRGRLPCTSTRGF 905
HEA DVM +RG LP S F
Sbjct: 841 KLHEAYRASDVMFERGFLPDESVMRF 866
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460864|ref|XP_004148164.1| PREDICTED: pentatricopeptide repeat-containing protein At5g62370-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 321/657 (48%), Positives = 434/657 (66%), Gaps = 33/657 (5%)
Query: 1 DQLINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQ 60
+QLI RG AQQVIQR++ S+S+S+A+S +FAA G+ D ++ L ++L+ F +
Sbjct: 37 EQLIRRGFFFQAQQVIQRIVTQSSSISEAISIVNFAAEWGLELDLATHGLLCRQLV-FSK 95
Query: 61 SQSALLLYQNDFVA-------------------LGNIEDALRHFDRLISKNIVPIKLACV 101
Q + LY FV LG E+AL HF+RL+S N VP K++
Sbjct: 96 PQLSEFLYNRKFVVGGAEPDVLLLDSMVSCFCRLGKFEEALSHFNRLLSLNYVPSKVSFN 155
Query: 102 SILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKK 161
+I R L A+ + LEAF+YF+++ AG+ L CW +NVL+DGLC +GF+ E LE+ +IM+
Sbjct: 156 AIFRELCAQGRVLEAFNYFVRVNGAGIYLGCWCFNVLMDGLCNQGFMGEALELFDIMQST 215
Query: 162 KGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKM 221
G P LH +K+LFY LCK+ VEAE REME + Y DK MYTSLI+GYC +R MKM
Sbjct: 216 NGYPPTLHLFKTLFYGLCKSGWLVEAELLIREMEFRSLYPDKTMYTSLIHGYCRDRKMKM 275
Query: 222 AMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMIS 281
AM+ FRM+K GC+PD++T N+LIHGF K+GL +KGW++Y M DWG QP++VT IMI
Sbjct: 276 AMQALFRMVKIGCKPDTFTLNSLIHGFVKLGLVEKGWLVYKLMEDWGIQPDVVTFHIMIG 335
Query: 282 NYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAP 341
YC+EG+VD+ALM+LNS VSSNL+PSVHCYTVL ALY++ RL EVD L K ML N + P
Sbjct: 336 KYCQEGKVDSALMILNSMVSSNLSPSVHCYTVLSSALYRNGRLEEVDGLLKGMLDNGIIP 395
Query: 342 DHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLL 401
DH+L L+K P+G ELQ AL +L K GCG DP SA + +L Q+ E++L
Sbjct: 396 DHVLFLTLMKMYPKGHELQLALNILETIVKNGCGCDPSVILASAEWQTSSNLEQKFEIVL 455
Query: 402 RKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQV 461
++I SD LA VAF+I ISALC+ + A L +V+ G +PL+FT N+LI+ +
Sbjct: 456 KEISISDLNLAGVAFSIVISALCETENFCYALDYLHNMVSLGCKPLLFTYNSLIRRLCKE 515
Query: 462 GFLEGANAIVELMQD-------------TEGNCKWGNLDSALDILDQMEVRGPKPSVAIY 508
E A ++++ M+D C+ GN+ +A IL +M G KPSVAIY
Sbjct: 516 RLFEDAMSLIDHMKDYSLFPNTTTYLIIVNEYCRQGNVTAAYHILRKMRQVGLKPSVAIY 575
Query: 509 DAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKE 568
D+II L +EKRI EAE +FK ML+AG+DPD+ F+ TMI GY +N + +EAC+LFE+M E
Sbjct: 576 DSIIRCLSREKRICEAEVVFKMMLEAGMDPDKKFYLTMIKGYSKNGRILEACELFEQMVE 635
Query: 569 NSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGE 625
NS+ P S+ YTALI GL K M D GC+YL +M +GF+PNVVLY+ L+NH+LR GE
Sbjct: 636 NSIPPSSHIYTALIRGLGMKNMTDKGCLYLGKMSRNGFLPNVVLYSTLMNHYLRVGE 692
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449499684|ref|XP_004160885.1| PREDICTED: pentatricopeptide repeat-containing protein At5g62370-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1546), Expect = e-168, Method: Compositional matrix adjust.
Identities = 320/657 (48%), Positives = 433/657 (65%), Gaps = 33/657 (5%)
Query: 1 DQLINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQ 60
+QLI RG AQQVIQR++ S+S+S+A+S +FAA G+ D ++ L ++L+ F +
Sbjct: 37 EQLIRRGFFFQAQQVIQRIVTQSSSISEAISIVNFAAEWGLELDLATHGLLCRQLV-FSK 95
Query: 61 SQSALLLYQNDFVA-------------------LGNIEDALRHFDRLISKNIVPIKLACV 101
Q + LY FV LG E+AL HF+RL+S N VP K++
Sbjct: 96 PQLSEFLYNRKFVVGGAEPDVLLLDSMVSCFCRLGKFEEALSHFNRLLSLNYVPSKVSFN 155
Query: 102 SILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKK 161
+I R L A+ + LEAF+YF+++ AG+ L CW +NVL+DGLC +GF+ E LE+ +IM+
Sbjct: 156 AIFRELCAQGRVLEAFNYFVRVNGAGIYLGCWCFNVLMDGLCNQGFMGEALELFDIMQST 215
Query: 162 KGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKM 221
G P LH +K+LFY LCK+ VEAE REME + Y DK MYTSLI+GYC +R MKM
Sbjct: 216 NGYPPTLHLFKTLFYGLCKSGWLVEAELLIREMEFRSLYPDKTMYTSLIHGYCRDRKMKM 275
Query: 222 AMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMIS 281
AM+ FRM+K GC+PD++T N+LIHGF K+GL +KGW++Y M DWG QP++VT IMI
Sbjct: 276 AMQALFRMVKIGCKPDTFTLNSLIHGFVKLGLVEKGWLVYKLMEDWGIQPDVVTFHIMIG 335
Query: 282 NYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAP 341
YC+EG+VD+ALM+LNS VSSNL+PSVHCYTVL ALY++ RL EVD L K ML N + P
Sbjct: 336 KYCQEGKVDSALMILNSMVSSNLSPSVHCYTVLSSALYRNGRLEEVDGLLKGMLDNGIIP 395
Query: 342 DHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLL 401
DH+L L+K P+G ELQ AL +L K GCG DP SA + +L Q+ E++L
Sbjct: 396 DHVLFLTLMKMYPKGHELQLALNILETIVKNGCGCDPSVILASAEWQTSSNLEQKFEIVL 455
Query: 402 RKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQV 461
++I SD LA VAF+I ISALC+ + A L +V+ G +PL+FT N+LI+ +
Sbjct: 456 KEISISDLNLAGVAFSIVISALCETENFCYALDYLHNMVSLGCKPLLFTYNSLIRRLCKE 515
Query: 462 GFLEGANAIVELMQD-------------TEGNCKWGNLDSALDILDQMEVRGPKPSVAIY 508
E A ++++ M+D C+ GN+ +A L +M G KPSVAIY
Sbjct: 516 RLFEDAMSLIDHMKDYSLFPNTTTYLIIVNEYCRQGNVTAAYHTLRKMRQVGLKPSVAIY 575
Query: 509 DAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKE 568
D+II L +EKRI EAE +FK ML+AG+DPD+ F+ TMI GY +N + +EAC+LFE+M E
Sbjct: 576 DSIIRCLSREKRICEAEVVFKMMLEAGMDPDKKFYLTMIKGYSKNGRILEACELFEQMVE 635
Query: 569 NSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGE 625
NS+ P S+ YTALI GL K M D GC+YL +M +GF+PNVVLY+ L+NH+LR GE
Sbjct: 636 NSIPPSSHIYTALIRGLGMKNMTDKGCLYLGKMSRNGFLPNVVLYSTLMNHYLRVGE 692
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357140804|ref|XP_003571953.1| PREDICTED: pentatricopeptide repeat-containing protein At5g62370-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 310/843 (36%), Positives = 462/843 (54%), Gaps = 15/843 (1%)
Query: 75 LGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWS 134
LGNI AL FD LI VP + ++LR + A + E D F+ A L
Sbjct: 56 LGNIASALTCFDHLIESRYVPSPASSAALLRAMCAASMYSEVVDLFVLWEGAPSPLPVSK 115
Query: 135 YNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREM 194
+ LI GLC KG +D+ + ++M GL P + YKSL + CK R++EA+ M
Sbjct: 116 FPFLIHGLCSKGAVDKARFLFDVMLGL-GLAPPVRVYKSLVFTYCKARRSLEADEMCCLM 174
Query: 195 ESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRM-LKTGCEPDSYTCNTLIHGFFKMGL 253
G Y+D+++ T+L+ G C +++AM +F RM + G + D+Y T+I G F+ G
Sbjct: 175 VKNGMYLDRMLGTALVKGLCQEGRLELAMDVFNRMRVNEGAQLDAYAYTTMIGGLFEHGY 234
Query: 254 FDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTV 313
D GW LY +M D G +P VT +M+ YC+ V AA+ L N V ++P + CYT+
Sbjct: 235 VDHGWELYQEMKDRGMEPTPVTYNVMMWWYCKNKWVGAAMELYNVMVRGGVSPDLRCYTM 294
Query: 314 LIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIG 373
L+ +L K +L+E ++L+ KML V PDH+L + + P+G E+ L AK+
Sbjct: 295 LMTSLCKEGKLVEAEQLFTKMLERGVFPDHVLFISIARFFPKGWEVVFVRKALKAVAKLD 354
Query: 374 CGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAY 433
C + L S A+ L QE E LL ++++S+ + + I A+C G+ + +Y
Sbjct: 355 CSGELLELSSLASGCSNMSLQQEAERLLDEMMRSNLLPIDAILNMMIIAMCSEGRLDVSY 414
Query: 434 VCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQ------DTEGN------- 480
L +LV +GY P V T N +IK + ++ A ++ LMQ D N
Sbjct: 415 YLLDKLVAYGYEPSVLTYNIVIKYLCRQKRMDDARTLINLMQSRGVRPDMSTNSIMVTAY 474
Query: 481 CKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDE 540
CK G+++SAL + D+M G +PS+A+YD+II LC+ EAE ++M++AG+ PDE
Sbjct: 475 CKIGDIESALSLFDEMAKDGLEPSIAVYDSIIACLCRLGHFKEAEFTLRQMIEAGLVPDE 534
Query: 541 VFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDR 600
V +TT++NGY R AC++F++M E +QPGS+ Y ALI+GLVK + YL+R
Sbjct: 535 VIYTTLLNGYSTMRHTKAACRVFDEMLERGLQPGSHAYGALINGLVKDNKIRKALHYLER 594
Query: 601 MLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRIT 660
ML +GF V+YT LIN F R GE L +LM+ N +E DLI Y ALV+G+CR I
Sbjct: 595 MLEEGFATQTVIYTMLINQFFRKGEEWLGLDLVDLMMKNHVEPDLITYGALVTGICRNID 654
Query: 661 GRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIE 720
R + D + MLF L Q + TR + S K Q I+ + +
Sbjct: 655 RRDMRPSLAAKLDEARYMLFRLLPQISFGTRKGKQKKKRMSSEEKIDLAQNIIQDLVESG 714
Query: 721 FMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAI 780
MP+L++YN + LC +MDDAY+ +M++ G+ PN VT+ IL+N I G+ ++AI
Sbjct: 715 MMPDLHIYNGMLNGLCRAQKMDDAYNLLSLMEQSGVLPNHVTYTILMNNDIRLGDSNRAI 774
Query: 781 GLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECF 840
LFN +N+DG V D VYNT +KGL A R S F M KRGFVP KA Y+ ++E
Sbjct: 775 QLFNSLNSDGHVFDDVVYNTFIKGLSLARRTKEALSFFLMMQKRGFVPSKAAYDKIMEQL 834
Query: 841 CANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRLPCT 900
A + A N+F +M H ++P SN + LL +L ++ + E V +M ++GR T
Sbjct: 835 LAENSTDLALNIFDDMFCHGYIPRYSNYSSLLLVLAKDNQWREVDRVFMMMLEKGRSLDT 894
Query: 901 STR 903
T+
Sbjct: 895 ETK 897
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|17047023|gb|AAL34928.1|AC079037_1 Putative PPR-repeat protein [Oryza sativa] gi|31429883|gb|AAP51872.1| hypothetical protein LOC_Os10g02650 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 284/838 (33%), Positives = 452/838 (53%), Gaps = 18/838 (2%)
Query: 75 LGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWS 134
LG+I AL HF RL+ P + ++LR + + EA D + L
Sbjct: 60 LGDISSALSHFHRLVQSGAAPSPASTAALLRAMCSASMSTEAMDVLVLSMGNPSPLPVSD 119
Query: 135 YNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREM 194
+ +LI GLC +G +D+ + + M + GL P + Y+SL +A CK R+++A + M
Sbjct: 120 FALLIPGLCSEGAVDKARFLFDAMLRS-GLTPPVRVYRSLAFAYCKARRSLDASDMCQLM 178
Query: 195 ESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRML-KTGCEPDSYTCNTLIHGFFKMGL 253
+G Y+D+ + T+LI +C ++ A+ +F RM + D+Y T+I G F+ G
Sbjct: 179 LIKGMYLDRELSTALIRVFCREGRLEPALDVFRRMKGDEHVQLDAYAYTTMIWGLFEHGR 238
Query: 254 FDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTV 313
D G +Y +M D G QP+ T +MI YC+ V AA+ + + + +AP + CYT+
Sbjct: 239 VDHGLQMYHEMIDRGIQPDAATYNVMIRWYCKSKWVGAAMDIYKVMIRTGVAPDLRCYTI 298
Query: 314 LIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIG 373
L+ +L K +L E + L+ KML + + PDH++ + + P+G + L AK+
Sbjct: 299 LMASLCKDGKLGEAENLFDKMLESGLFPDHVMFISIARFFPKGWVVLFVRKALKAVAKLD 358
Query: 374 CGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAY 433
CG L S A L +E + LL +IV S+ N+ + I A+C G+ + +Y
Sbjct: 359 CGAKLLELSSLAGGCSNMSLQKEADHLLDEIVTSNVLPVNIVLNLMIIAMCSEGRLDVSY 418
Query: 434 VCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQ------DTEGN------- 480
L +LV +G P V T N +IKC + ++ A A++ +MQ D N
Sbjct: 419 YLLGKLVAYGCEPSVLTYNIVIKCLCEQNRMDDARALITIMQSRGVRPDMSTNSIMVTAY 478
Query: 481 CKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDE 540
CK G ++SAL + +M G +PS+A+YD+II LC+ +R+ EAE ++M++ G+ PDE
Sbjct: 479 CKIGEIESALHLFGEMAKDGIEPSIAVYDSIIVCLCRMRRLKEAEATLRQMIREGLAPDE 538
Query: 541 VFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDR 600
+ +T++INGY R+ C++F++M + +QPG + Y +LI+GLVK + YL+R
Sbjct: 539 IIYTSLINGYSLTRQTRNVCRIFDEMLKRGLQPGPHAYGSLINGLVKGNKIRKALGYLER 598
Query: 601 MLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRIT 660
ML +G P V+YT LIN F R G+ L LM+ + DLI Y ALV+G+CR I
Sbjct: 599 MLEEGIAPQTVIYTMLINQFFRKGDVRLGLDLVVLMMKTNVAPDLITYGALVTGICRNIA 658
Query: 661 GRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIE 720
R + + + MLF L Q + TR + + + Q I+ +++
Sbjct: 659 RRGMRPSLAKKLKEARYMLFRMLPQ-IIDTRNGKQKDNQICTEEMIQVAQGIIQDLEENG 717
Query: 721 FMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAI 780
+P+L++YN + LC +MDDAY +M + G+ PN VT+ IL+N I G+I+ AI
Sbjct: 718 MVPDLHIYNGMINGLCRANKMDDAYSLLSVMDQTGILPNHVTYTILMNNQIRLGDINHAI 777
Query: 781 GLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECF 840
LFN +N+DGCV DK YNT +KGL AGR+ S MHKRGFVP KA+Y+ L+E
Sbjct: 778 QLFNSLNSDGCVFDKITYNTFIKGLSLAGRMKEALSFLLMMHKRGFVPSKASYDKLMELL 837
Query: 841 CA-NCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRL 897
A N + I +F++M+ + P +N LL +L ++ + EA + +M K+ ++
Sbjct: 838 LAENAIDI-VLQLFEDMLFQGYTPRYANYTSLLLVLAKDGRWSEADRIFTMMLKKRKM 894
|
Source: Oryza sativa Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125573832|gb|EAZ15116.1| hypothetical protein OsJ_30529 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 278/835 (33%), Positives = 437/835 (52%), Gaps = 41/835 (4%)
Query: 75 LGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWS 134
LG+I AL HF RL+ P + ++LR + + EA D + L
Sbjct: 60 LGDISSALSHFHRLVQSGAAPSPASTAALLRAMCSASMSTEAMDVLVLSMGNPSPLPVSD 119
Query: 135 YNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREM 194
+ +LI GLC +G +D+ + + M + GL P + Y+SL +A CK R+++A + M
Sbjct: 120 FALLIPGLCSEGAVDKARFLFDAML-RSGLTPPVRVYRSLAFAYCKARRSLDASDMCQLM 178
Query: 195 ESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRML-KTGCEPDSYTCNTLIHGFFKMGL 253
+G Y+D+ + T+LI +C ++ A+ +F RM + D+Y T+I G F+ G
Sbjct: 179 LIKGMYLDRELSTALIRVFCREGRLEPALDVFRRMKGDEHVQLDAYAYTTMIWGLFEHGR 238
Query: 254 FDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTV 313
D G +Y +M D G QP+ T +MI YC+ V AA+
Sbjct: 239 VDHGLQMYHEMIDRGIQPDAATYNVMIRWYCKSKWVGAAM-------------------- 278
Query: 314 LIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIG 373
+YK +L E + L+ KML + + PDH++ + + P+G + L AK+
Sbjct: 279 ---DIYKDGKLGEAENLFDKMLESGLFPDHVMFISIARFFPKGWVVLFVRKALKAVAKLD 335
Query: 374 CGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAY 433
CG L S A L +E + LL +IV S+ N+ + I A+C G+ + +Y
Sbjct: 336 CGAKLLELSSLAGGCSNMSLQKEADHLLDEIVTSNVLPVNIVLNLMIIAMCSEGRLDVSY 395
Query: 434 VCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQ------DTEGN------- 480
L +LV +G P V T N +IKC + ++ A A++ +MQ D N
Sbjct: 396 YLLGKLVAYGCEPSVLTYNIVIKCLCEQNRMDDARALITIMQSRGVRPDMSTNSIMVTAY 455
Query: 481 CKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDE 540
CK G ++SAL + +M G +PS+A+YD+II LC+ +R+ EAE ++M++ G+ PDE
Sbjct: 456 CKIGEIESALHLFGEMAKDGIEPSIAVYDSIIVCLCRMRRLKEAEATLRQMIREGLAPDE 515
Query: 541 VFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDR 600
+ +T++INGY R+ C++F++M + +QPG + Y +LI+GLVK + YL+R
Sbjct: 516 IIYTSLINGYSLTRQTRNVCRIFDEMLKRGLQPGPHAYGSLINGLVKGNKIRKALGYLER 575
Query: 601 MLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRIT 660
ML +G P V+YT LIN F R G+ L LM+ + DLI Y ALV+G+CR I
Sbjct: 576 MLEEGIAPQTVIYTMLINQFFRKGDVRLGLDLVVLMMKTNVAPDLITYGALVTGICRNIA 635
Query: 661 GRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIE 720
R + + + MLF L Q + TR + + + Q I+ +++
Sbjct: 636 RRGMRPSLAKKLKEARYMLFRMLPQ-IIDTRNGKQKDNQICTEEMIQVAQGIIQDLEENG 694
Query: 721 FMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAI 780
+P+L++YN + LC +MDDAY +M + G+ PN VT+ IL+N I G+I+ AI
Sbjct: 695 MVPDLHIYNGMINGLCRANKMDDAYSLLSVMDQTGILPNHVTYTILMNNQIRLGDINHAI 754
Query: 781 GLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECF 840
LFN +N+DGCV DK YNT +KGL AGR+ S MHKRGFVP KA+Y+ L+E
Sbjct: 755 QLFNSLNSDGCVFDKITYNTFIKGLSLAGRMKEALSFLLMMHKRGFVPSKASYDKLMELL 814
Query: 841 CA-NCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKR 894
A N + I +F++M+ + P +N LL +L ++ + EA + +M K+
Sbjct: 815 LAENAIDI-VLQLFEDMLFQGYTPRYANYTSLLLVLAKDGRWSEADRIFTMMLKK 868
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 918 | ||||||
| TAIR|locus:2167898 | 982 | AT5G62370 [Arabidopsis thalian | 0.883 | 0.825 | 0.400 | 3.8e-156 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.593 | 0.600 | 0.281 | 1.1e-47 | |
| TAIR|locus:2098495 | 880 | AT3G07290 "AT3G07290" [Arabido | 0.581 | 0.606 | 0.278 | 1.5e-46 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.820 | 0.677 | 0.237 | 3.8e-45 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.839 | 0.885 | 0.234 | 9.9e-44 | |
| TAIR|locus:2082727 | 851 | AT3G54980 [Arabidopsis thalian | 0.625 | 0.674 | 0.247 | 1.9e-43 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.728 | 0.876 | 0.252 | 8.8e-42 | |
| TAIR|locus:2084978 | 602 | AT3G04760 [Arabidopsis thalian | 0.498 | 0.760 | 0.294 | 1e-41 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.458 | 0.768 | 0.274 | 2.6e-40 | |
| TAIR|locus:2015218 | 590 | AT1G63070 [Arabidopsis thalian | 0.448 | 0.698 | 0.295 | 3.4e-40 |
| TAIR|locus:2167898 AT5G62370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1522 (540.8 bits), Expect = 3.8e-156, P = 3.8e-156
Identities = 338/844 (40%), Positives = 497/844 (58%)
Query: 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNC 132
V L ++A H DR+I+ P + + ++ L +++FLEAF F ++ G L
Sbjct: 142 VKLRRFDEARAHLDRIIASGYAPSRNSSSLVVDELCNQDRFLEAFHCFEQVKERGSGLWL 201
Query: 133 WSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAR 192
W L GLC G L+E + +++ + + ++ YKSLFY CK EAE+
Sbjct: 202 WCCKRLFKGLCGHGHLNEAIGMLDTLCGMTRMPLPVNLYKSLFYCFCKRGCAAEAEALFD 261
Query: 193 EMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMG 252
ME G+YVDK+MYT L+ YC + NM MAMRL+ RM++ E D NTLIHGF K+G
Sbjct: 262 HMEVDGYYVDKVMYTCLMKEYCKDNNMTMAMRLYLRMVERSFELDPCIFNTLIHGFMKLG 321
Query: 253 LFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALML-LNSKVSSNLAPSVHCY 311
+ DKG V++SQM G Q N+ T IMI +YC+EG VD AL L +N+ S +++ +VHCY
Sbjct: 322 MLDKGRVMFSQMIKKGVQSNVFTYHIMIGSYCKEGNVDYALRLFVNNTGSEDISRNVHCY 381
Query: 312 TVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAK 371
T LI YK + + +L +ML N + PDH+ F+LLK P+ EL++A+++L
Sbjct: 382 TNLIFGFYKKGGMDKAVDLLMRMLDNGIVPDHITYFVLLKMLPKCHELKYAMVILQSILD 441
Query: 372 IGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEK 431
GCGI+P ++ G++ ++E LL +I + D LA V + +ALC Y
Sbjct: 442 NGCGINP------PVIDDLGNIEVKVESLLGEIARKDANLAAVGLAVVTTALCSQRNYIA 495
Query: 432 AYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEG-----------N 480
A + ++VN G PL F+ N++IKC +Q +E ++V ++Q+ + N
Sbjct: 496 ALSRIEKMVNLGCTPLPFSYNSVIKCLFQENIIEDLASLVNIIQELDFVPDVDTYLIVVN 555
Query: 481 --CKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDP 538
CK + D+A I+D ME G +P+VAIY +IIG L K+ R++EAE+ F +ML++GI P
Sbjct: 556 ELCKKNDRDAAFAIIDAMEELGLRPTVAIYSSIIGSLGKQGRVVEAEETFAKMLESGIQP 615
Query: 539 DEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYL 598
DE+ + MIN Y +N + EA +L E++ ++ ++P S+ YT LISG VK GM++ GC YL
Sbjct: 616 DEIAYMIMINTYARNGRIDEANELVEEVVKHFLRPSSFTYTVLISGFVKMGMMEKGCQYL 675
Query: 599 DRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRR 658
D+ML DG PNVVLYTALI HFL+ G+F+F+ L LM N I+ D IAYI L+SG+ R
Sbjct: 676 DKMLEDGLSPNVVLYTALIGHFLKKGDFKFSFTLFGLMGENDIKHDHIAYITLLSGLWRA 735
Query: 659 ITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKD 718
+ RKK V + GKE L +L + T+ + S++ + G K +++ KVK
Sbjct: 736 MA-RKKKRQV--IVEPGKEKLLQRL----IRTKPLVSIPSSLGNYGSKSFAMEVIGKVKK 788
Query: 719 IEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQ 778
+PNLYL+N I C GR+D+AY+H + M++EG+ PN VT+ IL+ HI AG+I+
Sbjct: 789 -SIIPNLYLHNTIITGYCAAGRLDEAYNHLESMQKEGIVPNLVTYTILMKSHIEAGDIES 847
Query: 779 AIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLE 838
AI LF N C PD+ +Y+TLLKGLC R ++ M K G P K +YE LL+
Sbjct: 848 AIDLFEGTN---CEPDQVMYSTLLKGLCDFKRPLDALALMLEMQKSGINPNKDSYEKLLQ 904
Query: 839 CFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGR-- 896
C C + L++ A + K+M D P N WL+ ILC+EK EA+ + +M + GR
Sbjct: 905 CLCYSRLTMEAVKVVKDMAALDIWPRSINHTWLIYILCEEKKLREARALFAIMVQSGRSL 964
Query: 897 LPCT 900
L CT
Sbjct: 965 LNCT 968
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 527 (190.6 bits), Expect = 1.1e-47, P = 1.1e-47
Identities = 162/575 (28%), Positives = 254/575 (44%)
Query: 56 IKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLE 115
++F S++A+ G IE+AL R++ + P +++ L KF E
Sbjct: 326 LRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHE 385
Query: 116 AFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175
A F ++ G+ N +Y++LID C +G LD L + M GL +++PY SL
Sbjct: 386 AELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEM-VDTGLKLSVYPYNSLI 444
Query: 176 YALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCE 235
CK AE F EM ++ + YTSL+ GYCS + A+RL+ M G
Sbjct: 445 NGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIA 504
Query: 236 PDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALML 295
P YT TL+ G F+ GL L+++M++W +PN VT +MI YC EG++ A
Sbjct: 505 PSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEF 564
Query: 296 LNSKVSSNLAPSVHCYTVLIDALYKHNRLME----VDELYKKMLANRVAPDHLLSFILLK 351
L + P + Y LI L + E VD L+K N + + +L
Sbjct: 565 LKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHK---GNCELNEICYTGLLHG 621
Query: 352 NCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKS--DP 409
C EG +L+ AL + E + G +D + + G L + L ++K D
Sbjct: 622 FCREG-KLEEALSVCQEMVQRGVDLDLVCYGVLID----GSLKHKDRKLFFGLLKEMHDR 676
Query: 410 KLA--NVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGA 467
L +V +T I A K G +++A+ ++N G P T +I + GF+ A
Sbjct: 677 GLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEA 736
Query: 468 NAIVELMQDTEGNCKWGNLDSALDILDQMEV-------------RGPKPSVAIYDAIIGH 514
+ MQ LDIL + EV +G + A Y+ +I
Sbjct: 737 EVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRG 796
Query: 515 LCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPG 574
C++ RI EA ++ RM+ G+ PD + +TTMIN + +A +L+ M E ++P
Sbjct: 797 FCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPD 856
Query: 575 SYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPN 609
Y LI G G + + ML G +PN
Sbjct: 857 RVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891
|
|
| TAIR|locus:2098495 AT3G07290 "AT3G07290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 498 (180.4 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 157/563 (27%), Positives = 263/563 (46%)
Query: 112 KFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPY 171
K + FD ++ G LN Y+ L+ L K L + V + G V + Y
Sbjct: 142 KLMYCFDELREVF--GFRLNYPCYSSLLMSLA-KLDLGFLAYVTYRRMEADGFVVGMIDY 198
Query: 172 KSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLK 231
+++ ALCKN T AE F ++ GF +D + TSL+ G+C N++ A+++F M K
Sbjct: 199 RTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSK 258
Query: 232 -TGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVD 290
C P+S + + LIHG ++G ++ + L QM + G QP+ T ++I C G +D
Sbjct: 259 EVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLID 318
Query: 291 AALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILL 350
A L + + P+VH YTVLID L + ++ E + + +KM+ +R+ P ++++ L
Sbjct: 319 KAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPS-VITYNAL 377
Query: 351 KN--CPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNP---TGDLCQEIELLLRKIV 405
N C +G + A LL K C P R+ + + G + + LL R +
Sbjct: 378 INGYCKDGRVVP-AFELLTVMEKRAC--KPNVRTFNELMEGLCRVGKPYKAVHLLKRMLD 434
Query: 406 KS-DPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFL 464
P + V++ + I LC+ G AY L + F P T +I F + G
Sbjct: 435 NGLSPDI--VSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKA 492
Query: 465 EGANAIVELM--------QDT-----EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAI 511
+ A+A + LM + T +G CK G AL IL+ + + + I
Sbjct: 493 DVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVI 552
Query: 512 IGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSV 571
+ L K ++ E M ++ K G+ P V +TT+++G +++ + ++ E MK +
Sbjct: 553 LDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGC 612
Query: 572 QPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASR 631
P YPYT +I+GL + G V+ L M G PN V YT ++ ++ G+ + A
Sbjct: 613 LPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALE 672
Query: 632 LENLMVTNQIEFDLIAYIALVSG 654
MV E + Y +L+ G
Sbjct: 673 TVRAMVERGYELNDRIYSSLLQG 695
|
|
| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 507 (183.5 bits), Expect = 3.8e-45, P = 3.8e-45
Identities = 193/811 (23%), Positives = 352/811 (43%)
Query: 85 FDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYF-IKICNAGVDLNCWSYNVLIDGLC 143
F+++ + P ++ +++L F++ + L++ F ++ G + ++ +L+D LC
Sbjct: 316 FEKMKTGRHKPDRVTYITLL-DRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALC 374
Query: 144 YKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDK 203
G E + +++MR + G++P LH Y +L L + R +A MES G
Sbjct: 375 KAGNFGEAFDTLDVMRDQ-GILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTA 433
Query: 204 LMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQ 263
Y I+ Y + + A+ F +M G P+ CN ++ K G + ++
Sbjct: 434 YTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYG 493
Query: 264 MSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNR 323
+ D G P+ VT +M+ Y + GE+D A+ LL+ + + P V LI+ LYK +R
Sbjct: 494 LKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADR 553
Query: 324 LMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSI 383
+ E +++ +M ++ P + LL + ++Q A+ L + GC + +
Sbjct: 554 VDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTI---- 609
Query: 384 SATLNPTGD-LCQ--EIELLLRKIVKS-DPKLANVAFTI--YISALCKGGKYEKAYVCLF 437
T N D LC+ E+ L L+ + K D FT I L K G+ ++A +C F
Sbjct: 610 --TFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEA-MCFF 666
Query: 438 -QLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELM----QDTEGNCKWGNL------ 486
Q+ Y V C TL+ + +E A I+ D N W +L
Sbjct: 667 HQMKKLVYPDFVTLC-TLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILA 725
Query: 487 ----DSALDILDQMEVRGP-KPSVAIYDAIIGHLCKEKRILEAEDMFKRMLK-AGIDPDE 540
D+A+ +++ G + +I II + CK + A +F++ K G+ P
Sbjct: 726 EAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKL 785
Query: 541 VFFTTMINGYLQNRKPIEACQ-LFEKMKENSVQPGSYPYTALISGLVKKGMVD-LGCMYL 598
+ +I G L+ IE Q +F ++K P Y L+ K G +D L +Y
Sbjct: 786 PTYNLLIGGLLE-ADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYK 844
Query: 599 DRMLADGFVPNVVLYTALINHFLRAGEFEFASRLE-NLMVTNQIEFDLIAYIALVSGVCR 657
+ M N + + +I+ ++AG + A L +LM Y L+ G+ +
Sbjct: 845 E-MSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSK 903
Query: 658 RITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSN-GKKGTVQKIVLKV 716
+GR K++ L G R ++ + + GK G
Sbjct: 904 --SGRLY---------EAKQLFEGMLDYGC---RPNCAIYNILINGFGKAGEADAACALF 949
Query: 717 KDIE---FMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAA 773
K + P+L Y+ + LC VGR+D+ +F+ +K GL P+ V + ++ING +
Sbjct: 950 KRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKS 1009
Query: 774 GEIDQAIGLFNQMNAD-GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKAT 832
+++A+ LFN+M G PD YN+L+ L AG + ++ + + G P T
Sbjct: 1010 HRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFT 1069
Query: 833 YEHLLECFCANCLSIPAFNMFKEMIVHDHVP 863
+ L+ + + A+ +++ M+ P
Sbjct: 1070 FNALIRGYSLSGKPEHAYAVYQTMVTGGFSP 1100
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 491 (177.9 bits), Expect = 9.9e-44, P = 9.9e-44
Identities = 192/820 (23%), Positives = 349/820 (42%)
Query: 101 VSILRGLFAEEKFLEAFDYFIKICNAGVDLNC-WSYN--VLIDGLCYKGF--LDEVLEVV 155
+ +LR L + +E F ++ + +C SYN +L+ C + F LD++L +
Sbjct: 69 IGVLRRLKDVNRAIEYFRWYERRTELP---HCPESYNSLLLVMARC-RNFDALDQILGEM 124
Query: 156 NIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCS 215
++ G P+++ + K + E + M F YT+LI + +
Sbjct: 125 SVA----GFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSA 180
Query: 216 NRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVT 275
+ M + LF +M + G EP + TLI GF K G D L +M ++V
Sbjct: 181 VNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVL 240
Query: 276 DLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKML 335
+ I ++ + G+VD A + ++ L P YT +I L K NRL E E+++ +
Sbjct: 241 YNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLE 300
Query: 336 ANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISAT-LNPTGDLC 394
NR P ++ + A LL G +A + T L G +
Sbjct: 301 KNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVD 360
Query: 395 QEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTL 454
+ +++ + P L+ + I I LC+ GK + A+ + G P V T N +
Sbjct: 361 EALKVFEEMKKDAAPNLST--YNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIM 418
Query: 455 IKCFYQVGFLEGANAIVELMQ------DT-------EGNCKWGNLDSALDILDQMEVRGP 501
+ + L+ A A+ E M D +G K G +D A + ++M
Sbjct: 419 VDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDC 478
Query: 502 KPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQ 561
+ + +Y ++I + R + ++K M+ PD T ++ + +P +
Sbjct: 479 RTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRA 538
Query: 562 LFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFL 621
+FE++K P + Y+ LI GL+K G + M G V + Y +I+ F
Sbjct: 539 MFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFC 598
Query: 622 RAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFH 681
+ G+ A +L M T E ++ Y +++ G+ + ++R ++ MLF
Sbjct: 599 KCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAK----------IDRLDEA--YMLFE 646
Query: 682 KLQQGTLVTRTKSTAFSAVFSN-GKKGTVQKIVLKVKDIE---FMPNLYLYNDIFLLLCG 737
+ + + +S++ GK G + + L ++++ PNLY +N + L
Sbjct: 647 EAKSKRIELNV--VIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVK 704
Query: 738 VGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTV 797
+++A FQ MK PNQVT+ ILING + ++A + +M G P
Sbjct: 705 AEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTIS 764
Query: 798 YNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMI 857
Y T++ GL +AG ++ ++F G VP A Y ++E ++ AF++F+E
Sbjct: 765 YTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETR 824
Query: 858 VHDHVPCLSN-CNWLLNILCQEKHFHEAQIVLDVMHKRGR 896
+P + C LL+ L + +A IV V+ + G+
Sbjct: 825 RRG-LPIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRETGK 863
|
|
| TAIR|locus:2082727 AT3G54980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.9e-43, P = 1.9e-43
Identities = 149/603 (24%), Positives = 280/603 (46%)
Query: 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNC 132
V ++ +A + R+++ + + ++R EEK EA + + G + +
Sbjct: 209 VQRNSLTEAKELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDS 268
Query: 133 WSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAR 192
Y++ + C L ++ M++KK VP+ Y S+ A K +A
Sbjct: 269 LLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKD 328
Query: 193 EMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMG 252
EM S G ++ + TSLI G+C N ++ A+ LF +M K G P+S T + LI F K G
Sbjct: 329 EMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNG 388
Query: 253 LFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYT 312
+K Y +M G P++ +I + + + + AL L + + LA C T
Sbjct: 389 EMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFVCNT 448
Query: 313 VLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSF--ILLKNCPEGTELQHALMLLCEFA 370
+L L K + E EL KM + + P+ ++S+ ++L +C + + A ++
Sbjct: 449 IL-SWLCKQGKTDEATELLSKMESRGIGPN-VVSYNNVMLGHCRQ-KNMDLARIVFSNIL 505
Query: 371 KIGCGIDPLARSISATLNP---TGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGG 427
+ G + P + S ++ D +E++ + S+ ++ V + I+ LCK G
Sbjct: 506 EKG--LKPNNYTYSILIDGCFRNHDEQNALEVV-NHMTSSNIEVNGVVYQTIINGLCKVG 562
Query: 428 KYEKAYVCLFQLVNFGYRPLVFTC---NTLIKCFYQVGFLEGANAIVELMQDT------- 477
+ KA L ++ + L +C N++I F++ G ++ A A E M
Sbjct: 563 QTSKARELLANMIE--EKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVI 620
Query: 478 ------EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRM 531
G CK +D AL++ D+M+ +G K + Y A+I CK + A +F +
Sbjct: 621 TYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSEL 680
Query: 532 LKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMV 591
L+ G++P + + ++I+G+ + A L++KM ++ ++ YT LI GL+K G +
Sbjct: 681 LEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNL 740
Query: 592 DLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIAL 651
L M A G VP+ ++YT ++N + G+F ++ M N + +++ Y A+
Sbjct: 741 ILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAV 800
Query: 652 VSG 654
++G
Sbjct: 801 IAG 803
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 8.8e-42, P = 8.8e-42
Identities = 179/709 (25%), Positives = 308/709 (43%)
Query: 143 CYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREM-ESQGFYV 201
C K + + LE+ N MRK+ G L Y+S+ L + E +M E+ G ++
Sbjct: 16 CQKDPM-KALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHM 74
Query: 202 DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLY 261
+ +Y + Y ++ A+ +F RM CEP ++ N ++ G FD+ +Y
Sbjct: 75 LEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVY 134
Query: 262 SQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKH 321
+M D G P++ + I + ++C+ AAL LLN+ S +V Y ++ Y+
Sbjct: 135 MRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEE 194
Query: 322 NRLMEVDELYKKMLANRVAPDHLLSF--ILLKNCPEGTELQHALMLLCEFAKIGCGIDPL 379
N E EL+ KMLA+ V+ L +F +L C +G +++ LL + K G L
Sbjct: 195 NFKAEGYELFGKMLASGVSLC-LSTFNKLLRVLCKKG-DVKECEKLLDKVIKRGV----L 248
Query: 380 ARSISATLNPTGDLCQEIEL--LLRKI---VKSDPKLANVAFTIYISALCKGGKYEKAYV 434
+ L G LCQ EL +R + ++ PK + + I LCK K+++A V
Sbjct: 249 PNLFTYNLFIQG-LCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEV 307
Query: 435 CLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVE------LMQDT-------EGNC 481
L ++VN G P +T NTLI + + G ++ A IV + D +G C
Sbjct: 308 YLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLC 367
Query: 482 KWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEV 541
G + AL + ++ +G KP+V +Y+ +I L + ILEA + M + G+ P+
Sbjct: 368 HEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQ 427
Query: 542 FFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRM 601
F ++NG + +A L + M P + + LI G + ++ LD M
Sbjct: 428 TFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVM 487
Query: 602 LADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITG 661
L +G P+V Y +L+N + +FE MV +L + L+ +CR
Sbjct: 488 LDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRY--- 544
Query: 662 RKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDI-E 720
RK LD +EM + + T T NG + K+++ +
Sbjct: 545 RK--LD--EALGLLEEMKNKSVNPDAV---TFGTLIDGFCKNGDLDGAYTLFRKMEEAYK 597
Query: 721 FMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAI 780
+ YN I + A FQ M L P+ T+ ++++G G ++
Sbjct: 598 VSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGY 657
Query: 781 GLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK 829
+M +G +P T ++ LC R+ + + M ++G VP+
Sbjct: 658 KFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPE 706
|
|
| TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 451 (163.8 bits), Expect = 1.0e-41, P = 1.0e-41
Identities = 142/482 (29%), Positives = 226/482 (46%)
Query: 174 LFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTG 233
+F+ C++ +E+ M +G+ D ++ T LI G+ + RN+ A+R+ + K G
Sbjct: 95 IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG 154
Query: 234 CEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAAL 293
+PD + N LI+GF KM D + +M F P+ VT IMI + C G++D AL
Sbjct: 155 -QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLAL 213
Query: 294 MLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKN- 352
+LN +S N P+V YT+LI+A + E +L +ML+ + PD +++
Sbjct: 214 KVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGM 273
Query: 353 CPEGTELQHALMLLCEFAKIGCGIDPLARSI--SATLNPTGDLCQEIELLLRKIV--KSD 408
C EG + A ++ GC D ++ +I A LN G +E E L+ K+ K D
Sbjct: 274 CKEGM-VDRAFEMVRNLELKGCEPDVISYNILLRALLNQ-GKW-EEGEKLMTKMFSEKCD 330
Query: 409 PKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGAN 468
P + V ++I I+ LC+ GK E+A L + G P ++ + LI F + G L+ A
Sbjct: 331 PNV--VTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAI 388
Query: 469 AIVELM-QD------TEGN------CKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHL 515
+E M D N CK G D AL+I ++ G P+ + Y+ + L
Sbjct: 389 EFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 448
Query: 516 CKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGS 575
+ A M M+ GIDPDE+ + +MI+ + EA +L M+ P
Sbjct: 449 WSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSV 508
Query: 576 YPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENL 635
Y ++ G K ++ L+ M+ +G PN YT LI AG A L N
Sbjct: 509 VTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELAND 568
Query: 636 MV 637
+V
Sbjct: 569 LV 570
|
|
| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 438 (159.2 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 123/448 (27%), Positives = 213/448 (47%)
Query: 400 LLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCF- 458
L +VKS P + V F +SA+ K KY+ ++ G R ++T N +I CF
Sbjct: 72 LFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFC 131
Query: 459 --YQVGF-LEGANAIVELMQDTE---------GNCKWGNLDSALDILDQMEVRGPKPSVA 506
+QV L +++L + + G C+ + A+ ++D+M G KP +
Sbjct: 132 CCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIV 191
Query: 507 IYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKM 566
Y+AII LCK KR+ +A D FK + + GI P+ V +T ++NG + + +A +L M
Sbjct: 192 AYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM 251
Query: 567 KENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEF 626
+ + P Y+AL+ VK G V + M+ P++V Y++LIN
Sbjct: 252 IKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRI 311
Query: 627 EFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQG 686
+ A+++ +LMV+ D+++Y L++G C+ R D K LF ++ Q
Sbjct: 312 DEANQMFDLMVSKGCLADVVSYNTLINGFCK----------AKRVEDGMK--LFREMSQR 359
Query: 687 TLV--TRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDA 744
LV T T +T F G Q+ ++ P+++ YN + LC G ++ A
Sbjct: 360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKA 419
Query: 745 YDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKG 804
F+ M++ + + VT+ +I G G++++A LF ++ G PD Y T++ G
Sbjct: 420 LVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSG 479
Query: 805 LCQAGRLSHVFSVFYSMHKRGFVPKKAT 832
LC G L V +++ M + G + T
Sbjct: 480 LCTKGLLHEVEALYTKMKQEGLMKNDCT 507
|
|
| TAIR|locus:2015218 AT1G63070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 437 (158.9 bits), Expect = 3.4e-40, P = 3.4e-40
Identities = 125/423 (29%), Positives = 194/423 (45%)
Query: 481 CKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDE 540
C+ L AL IL +M G PS+ ++++ C RI EA + +M++ G PD
Sbjct: 121 CRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDT 180
Query: 541 VFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDR 600
V FTT+++G Q+ K EA L E+M QP Y A+I+GL K+G DL L++
Sbjct: 181 VTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNK 240
Query: 601 MLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRIT 660
M +VV+Y +I+ + + A L N M T I+ D+ Y L+S +C
Sbjct: 241 MEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNY-- 298
Query: 661 GRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLK-VKDI 719
GR W D +R +ML + + AF GK +K+ + VK
Sbjct: 299 GR--WSDASRLLS---DMLEKNINPDLVFFNALIDAF---VKEGKLVEAEKLYDEMVKSK 350
Query: 720 EFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQA 779
P++ YN + C R+++ + F+ M + GL N VT+ LI+G A + D A
Sbjct: 351 HCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNA 410
Query: 780 IGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLEC 839
+F QM +DG PD YN LL GLC G + VF M KR TY ++E
Sbjct: 411 QMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEA 470
Query: 840 FCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRLPC 899
C +++F + + P + +++ C++ EA + M + G LP
Sbjct: 471 LCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPN 530
Query: 900 TST 902
+ T
Sbjct: 531 SGT 533
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LVA2 | PP443_ARATH | No assigned EC number | 0.3907 | 0.9607 | 0.8981 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 918 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 6e-16
Identities = 85/404 (21%), Positives = 148/404 (36%), Gaps = 76/404 (18%)
Query: 406 KSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLE 465
K+D KL +T IS K GK + + ++VN G V T LI
Sbjct: 469 KADCKL----YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI---------- 514
Query: 466 GANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAE 525
+G + G + A M + KP +++A+I + + A
Sbjct: 515 ------------DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562
Query: 526 DMFKRMLKAG---IDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALI 582
D+ M KA IDPD + ++ + A ++++ + E +++ YT +
Sbjct: 563 DVLAEM-KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621
Query: 583 SGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIE 642
+ +KG D D M G P+ V ++AL++ AG+ + A + I+
Sbjct: 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681
Query: 643 FDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFS 702
++Y +L+ G C KK L++
Sbjct: 682 LGTVSYSSLM-GACSNAKNWKKALELYE-------------------------------- 708
Query: 703 NGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVT 762
+K I+ P + N + LC ++ A + MKR GL PN +T
Sbjct: 709 ------------DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756
Query: 763 FCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLC 806
+ IL+ + D + L +Q DG P+ + + GLC
Sbjct: 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 8e-16
Identities = 101/426 (23%), Positives = 169/426 (39%), Gaps = 60/426 (14%)
Query: 484 GNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFF 543
G + +D+L+ ME RG IY A CK++R ++ + F R K +P F
Sbjct: 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVK--EAF-RFAKLIRNPTLSTF 440
Query: 544 TTMINGYLQNRKPIE-ACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRML 602
M+ + + I+ A ++ ++E ++ YT LIS K G VD M+
Sbjct: 441 N-MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 603 ADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGR 662
G NV + ALI+ RAG+ A +M + ++ D + + AL+S
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA-------- 551
Query: 663 KKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFM 722
C SG V R AF V + K T I+
Sbjct: 552 --------CGQSGA------------VDR----AFD-VLAEMKAET--------HPID-- 576
Query: 723 PNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGL 782
P+ + G++D A + +QM+ ++ + I +N G+ D A+ +
Sbjct: 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636
Query: 783 FNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCA 842
++ M G PD+ ++ L+ AG L F + K+G +Y L+ C+
Sbjct: 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA-CS 695
Query: 843 NCLSIPAFNMFKEMIVHDHV------PCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGR 896
N A N K + +++ + P +S N L+ LC+ +A VL M + G
Sbjct: 696 N-----AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750
Query: 897 LPCTST 902
P T T
Sbjct: 751 CPNTIT 756
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 2e-15
Identities = 87/343 (25%), Positives = 159/343 (46%), Gaps = 39/343 (11%)
Query: 499 RGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIE 558
G V++ +++I EAE +F RM D V +T MI+GY +N P +
Sbjct: 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDK 372
Query: 559 ACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALIN 618
A + + M++++V P +++S G +D+G + G + VV+ ALI
Sbjct: 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432
Query: 619 HFLRAGEFEFASRLENLMVTNQI-EFDLIAYIALVSGVCRRITGRKKWLDVNRCSDS--- 674
+ + + A L V + I E D+I++ ++++G+ NRC ++
Sbjct: 433 MYSKCKCIDKA-----LEVFHNIPEKDVISWTSIIAGLRLN----------NRCFEALIF 477
Query: 675 GKEMLFH-KLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLK--VKDIEFMPNLYLYNDI 731
++ML K TL+ + A GK+ + VL+ + F+PN L D+
Sbjct: 478 FRQMLLTLKPNSVTLIAALSACARIGALMCGKE--IHAHVLRTGIGFDGFLPNALL--DL 533
Query: 732 FLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGC 791
+ + C GRM+ A++ F +++ V++ IL+ G++A G+ A+ LFN+M G
Sbjct: 534 Y-VRC--GRMNYAWNQFNSHEKD-----VVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585
Query: 792 VPDKTVYNTLLKGLCQAGRLSHVFSVFYSM-HKRGFVPKKATY 833
PD+ + +LL ++G ++ F+SM K P Y
Sbjct: 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 4e-13
Identities = 105/507 (20%), Positives = 184/507 (36%), Gaps = 113/507 (22%)
Query: 161 KKGLVPALHPYKSLFYALCKNIRTV-EAESFAREMESQGFYVDKLMYTSLINGYCSNRNM 219
K+GL+ Y + F+ CK R V EA FA KL+ RN
Sbjct: 398 KRGLLDMDKIYHAKFFKACKKQRAVKEAFRFA-----------KLI-----------RNP 435
Query: 220 KMAMRLFFRMLKTGCEPDSYTCNTL-IHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLI 278
++ F ML + C ++ I G + VL + + G + +
Sbjct: 436 TLST---FNMLMSVC------ASSQDIDGALR--------VL-RLVQEAGLKADCKLYTT 477
Query: 279 MISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANR 338
+IS + G+VDA + + V++ + +VH + LID + ++ + Y M +
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 339 VAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIE 398
V PD ++ L+ C + + A +L E IDP ++ A
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA------------- 584
Query: 399 LLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCF 458
+ A G+ ++A + + +
Sbjct: 585 --------------------LMKACANAGQVDRAKEVYQMIHEYNIK------------- 611
Query: 459 YQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAII---GHL 515
G E V G+ D AL I D M+ +G KP + A++ GH
Sbjct: 612 ---GTPEVYTIAVNSCSQK------GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH- 661
Query: 516 CKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIE-ACQLFEKMKENSVQPG 574
+ +A ++ + K GI V +++++ G N K + A +L+E +K ++P
Sbjct: 662 --AGDLDKAFEILQDARKQGIKLGTVSYSSLM-GACSNAKNWKKALELYEDIKSIKLRPT 718
Query: 575 SYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLEN 634
ALI+ L + + L M G PN + Y+ L+ R + +
Sbjct: 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG----- 773
Query: 635 LMVTNQIEFDLIAYIALVSGVCRRITG 661
L + +Q + D I +CR ITG
Sbjct: 774 LDLLSQAKED---GIKPNLVMCRCITG 797
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 5e-13
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFK 250
Y +LI+GYC ++ A++LF M K G +P+ YT + LI G K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 8e-13
Identities = 93/464 (20%), Positives = 179/464 (38%), Gaps = 72/464 (15%)
Query: 177 ALCKNI-------RTVEAESFAREMESQG-FYVDKLMYTSLINGYCSNRNMKMAMRLFFR 228
+LC I R EA +E+ F + Y +L+ + ++++ +++
Sbjct: 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWH 148
Query: 229 MLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGE 288
+ +G EPD Y N ++ K G+ L+ +M + N+ + +I G
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGN 204
Query: 289 VDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFI 348
A L + V++ A
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAG---------------------------- 236
Query: 349 LLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSD 408
L + G +L C K G D +S L C +IE R +
Sbjct: 237 -LGSARAGQQLH------CCVLKTGVVGD---TFVSCALIDMYSKCGDIEDA-RCVFDGM 285
Query: 409 PKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGA- 467
P+ VA+ ++ G E+A +++ + G FT + +I+ F ++ LE A
Sbjct: 286 PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345
Query: 468 NAIVELMQ-----DTEGN-------CKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHL 515
A L++ D N KWG ++ A ++ D+M P+ ++ ++A+I
Sbjct: 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM----PRKNLISWNALIAGY 401
Query: 516 CKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKEN-SVQPG 574
R +A +MF+RM+ G+ P+ V F +++ + + ++F+ M EN ++P
Sbjct: 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461
Query: 575 SYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALIN 618
+ Y +I L ++G++D + R F P V ++ AL+
Sbjct: 462 AMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLT 502
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 2e-12
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 758 PNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQ 807
P+ VT+ LI+G+ G++++A+ LFN+M G P+ Y+ L+ GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 2e-12
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 236 PDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCR 285
PD T NTLI G+ K G ++ L+++M G +PN+ T I+I C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 4e-11
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 538 PDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVK 587
PD V + T+I+GY + K EA +LF +MK+ ++P Y Y+ LI GL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 8e-11
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 503 PSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGY 550
P V Y+ +I CK+ ++ EA +F M K GI P+ ++ +I+G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 1e-09
Identities = 90/394 (22%), Positives = 150/394 (38%), Gaps = 71/394 (18%)
Query: 505 VAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFE 564
V + +A+I K ++ A +F RM + D + + MI+GY +N + +E +LF
Sbjct: 222 VDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFF 277
Query: 565 KMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAG 624
M+E SV P T++IS G LG ++ GF +V + +LI +L G
Sbjct: 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337
Query: 625 EFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNR-------------- 670
+ A ++ + M T D +++ A++SG + K L+
Sbjct: 338 SWGEAEKVFSRMETK----DAVSWTAMISG-YEKNGLPDKALETYALMEQDNVSPDEITI 392
Query: 671 ------CSDSG---KEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEF 721
C+ G + H+L + + A + + K + K L+V
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK-ALEV--FHN 449
Query: 722 MP--NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTF------CILINGHIAA 773
+P ++ + I L R +A F+ M L+PN VT C I +
Sbjct: 450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCG 508
Query: 774 GEIDQAIGLFNQMNADGCVP-------------------------DKTVYNTLLKGLCQA 808
EI A L + DG +P D +N LL G
Sbjct: 509 KEI-HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAH 567
Query: 809 GRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCA 842
G+ S +F M + G P + T+ LL C C+
Sbjct: 568 GKGSMAVELFNRMVESGVNPDEVTFISLL-CACS 600
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 7e-09
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 723 PNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGH 770
P++ YN + C G++++A F MK+ G++PN T+ ILI+G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 79/432 (18%), Positives = 159/432 (36%), Gaps = 69/432 (15%)
Query: 465 EGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGP-KPSVAIYDAIIGHLCKEKRILE 523
+ + V L E G AL++ + +E P + YDA++ K I
Sbjct: 82 QIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRC 141
Query: 524 AEDMFKRMLKAGIDPDE-------------------------------VFFTTMINGYLQ 552
+ ++ + +G +PD+ + T+I G +
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVD 201
Query: 553 NRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVL 612
EA LF +M E+ + ++ G G +L G V + +
Sbjct: 202 AGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261
Query: 613 YTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCS 672
ALI+ + + G+ E A + + M E +A+ ++++G ++ S
Sbjct: 262 SCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYA-----------LHGYS 306
Query: 673 DSGKEMLFH------KLQQGTLVTRTKSTAFSAVFSNGKK---GTVQKIVLKVKDIEFMP 723
+ + + + Q T + + A+ + K+ G ++ ++ +
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF----PLDIVA 362
Query: 724 NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLF 783
N L + L GRM+DA + F M R+ N +++ LI G+ G +A+ +F
Sbjct: 363 NTALVD----LYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMF 414
Query: 784 NQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHK-RGFVPKKATYEHLLECFCA 842
+M A+G P+ + +L +G + +F SM + P+ Y ++E
Sbjct: 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474
Query: 843 NCLSIPAFNMFK 854
L A+ M +
Sbjct: 475 EGLLDEAYAMIR 486
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 92/470 (19%), Positives = 155/470 (32%), Gaps = 143/470 (30%)
Query: 392 DLCQE-IELLLRKIVKS-DPKLANVAFTIYISALC---KGGKYEKAYVCLFQLVNFGYRP 446
C E +EL S DP L + I L + G+ YV V G+
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV-----VKTGFAV 321
Query: 447 LVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNL----------DSALDILDQM 496
V CN+LI+ + +G A + M +T+ W + D AL+ M
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRM-ETKDAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 497 EVRGPKPS-----------------------------------VAIYDAIIGHLCKEKRI 521
E P V + +A+I K K I
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440
Query: 522 LEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTAL 581
+A ++F + + D + +T++I G N + EA F +M +++P S A
Sbjct: 441 DKALEVFHNI----PEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAA 495
Query: 582 ISGLVKKGMVDLGCMYLDRML-----ADGFVPN-------------------------VV 611
+S + G + G +L DGF+PN VV
Sbjct: 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVV 555
Query: 612 LYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRC 671
+ L+ ++ G+ A L N MV + + D + +I+L+ R +
Sbjct: 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL------ 609
Query: 672 SDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDI 731
FH +++ +T PNL Y +
Sbjct: 610 ------EYFHSMEEKYSIT--------------------------------PNLKHYACV 631
Query: 732 FLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILING-----HIAAGEI 776
LL G++ +AY+ M + P+ + L+N H+ GE+
Sbjct: 632 VDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGEL 678
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 8e-08
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 3/165 (1%)
Query: 145 KGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKL 204
KG D L + + M KKKG+ P + +L +A ++ QG + +
Sbjct: 627 KGDWDFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685
Query: 205 MYTSLINGYCSN-RNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQ 263
Y+SL+ G CSN +N K A+ L+ + P T N LI + K + S+
Sbjct: 686 SYSSLM-GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744
Query: 264 MSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSV 308
M G PN +T I++ R+ + D L LL+ + P++
Sbjct: 745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-07
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 271 PNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK 320
P++VT +I YC++G+V+ AL L N + P+V+ Y++LID L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 793 PDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFC 841
PD YNTL+ G C+ G++ +F M KRG P TY L++ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 4e-07
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 134 SYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCK 180
+YN LIDG C KG ++E L++ N M KK+G+ P ++ Y L LCK
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEM-KKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 9e-07
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 573 PGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHF 620
P Y LI G KKG V+ + M G PNV Y+ LI+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDS 238
Y +LI+G C ++ A+ LF M + G EPD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-06
Identities = 62/278 (22%), Positives = 122/278 (43%), Gaps = 15/278 (5%)
Query: 76 GNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSY 135
G+IEDA FD + K V A S+L G EA + ++ ++GV ++ +++
Sbjct: 273 GDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328
Query: 136 NVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREME 195
+++I + + L E + + + G + +L K R +A + M
Sbjct: 329 SIMI-RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
Query: 196 SQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFD 255
+ + + +LI GY ++ A+ +F RM+ G P+ T ++ GL +
Sbjct: 388 RKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443
Query: 256 KGWVLYSQMS-DWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVL 314
+GW ++ MS + +P + MI REG +D A ++ + P+V+ + L
Sbjct: 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR---RAPFKPTVNMWAAL 500
Query: 315 IDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKN 352
+ A H L +K+ + P+ L ++++L N
Sbjct: 501 LTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLN 536
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-06
Identities = 97/454 (21%), Positives = 174/454 (38%), Gaps = 74/454 (16%)
Query: 481 CKWGNLDSALDILDQM-EVRGPKPSVAIYDAIIGHLCKEKRILEA-EDMFKRMLKAGIDP 538
C G L+ AL +L+ M E+R P Y A+ LC+ KR +E + R L +
Sbjct: 62 CSHGQLEQALKLLESMQELRVP-VDEDAYVALF-RLCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 539 DEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLG-CMY 597
M++ +++ + + A +F KM E + + + L+ G K G D C+Y
Sbjct: 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPERDL----FSWNVLVGGYAKAGYFDEALCLY 175
Query: 598 LDRMLADGFVPNV-----VLYT------------------------------ALINHFLR 622
RML G P+V VL T ALI +++
Sbjct: 176 -HRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 623 AGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHK 682
G+ A + + M D I++ A++SG + + C G E+ F
Sbjct: 235 CGDVVSARLVFDRMPRR----DCISWNAMISG----------YFENGEC-LEGLELFFTM 279
Query: 683 LQ---QGTLVTRTKSTAFSAVFSNGKKGT-VQKIVLKVKDIEFMPNLYLYNDIFLLLCGV 738
+ L+T T + + + + G + V+K F ++ + N + + +
Sbjct: 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG---FAVDVSVCNSLIQMYLSL 336
Query: 739 GRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVY 798
G +A F M+ + V++ +I+G+ G D+A+ + M D PD+
Sbjct: 337 GSWGEAEKVFSRMETKDA----VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392
Query: 799 NTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSI-PAFNMFKEMI 857
++L G L + ++G + L+E + + C I A +F +
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY-SKCKCIDKALEVFHNIP 451
Query: 858 VHDHVPCLSNCNWL-LNILCQEKHFHEAQIVLDV 890
D + S L LN C E Q++L +
Sbjct: 452 EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL 485
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 4e-06
Identities = 75/338 (22%), Positives = 142/338 (42%), Gaps = 32/338 (9%)
Query: 24 ASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQ-SQSALLLYQNDFVALGNIEDAL 82
AS DAL A A++ +R Y + + Q + +LL V G + DA
Sbjct: 123 ASTYDALVEA-CIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH---VKCGMLIDAR 178
Query: 83 RHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLID-- 140
R FD + +N+ +I+ GL + EAF F ++ G D ++ V++
Sbjct: 179 RLFDEMPERNLASWG----TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234
Query: 141 ---GLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSL--FYALCKNIRTVEAESFAREME 195
G G + L + K G+V +L Y+ C +I +A M
Sbjct: 235 AGLGSARAG---QQLHCCVL---KTGVVGDTFVSCALIDMYSKCGDIE--DARCVFDGMP 286
Query: 196 SQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFD 255
+ + + S++ GY + + A+ L++ M +G D +T + +I F ++ L +
Sbjct: 287 EK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342
Query: 256 KGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLI 315
++ + GF ++V + ++ Y + G ++ A + + NL + LI
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS----WNALI 398
Query: 316 DALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNC 353
H R + E++++M+A VAP+H+ +L C
Sbjct: 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 7e-06
Identities = 70/303 (23%), Positives = 111/303 (36%), Gaps = 48/303 (15%)
Query: 117 FDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFY 176
F+ F ++ NAGV+ N ++ LIDG G + + IMR K + P + +F
Sbjct: 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-----VKPDRVVFN 546
Query: 177 AL---CKNIRTVE-AESFAREMESQGFYVD-------KLM-------------------- 205
AL C V+ A EM+++ +D LM
Sbjct: 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606
Query: 206 ----------YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFD 255
YT +N + A+ ++ M K G +PD + L+ G D
Sbjct: 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666
Query: 256 KGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLI 315
K + + G + V+ ++ AL L S L P+V LI
Sbjct: 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726
Query: 316 DALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCG 375
AL + N+L + E+ +M + P+ + ILL + L LL + AK G
Sbjct: 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ-AKED-G 784
Query: 376 IDP 378
I P
Sbjct: 785 IKP 787
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 7e-06
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 797 VYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP 828
YNTL+ GLC+AGR+ +F M +RG P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 8e-06
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 755 GLRPNQVTFCILINGHIAAGEIDQAIGLFNQM 786
GL+P+ VT+ LI+G AG +D+A+ L ++M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 58/272 (21%), Positives = 91/272 (33%), Gaps = 63/272 (23%)
Query: 44 DSGSYSALMKKLIKFGQSQSALLLYQ------------------NDFVALGNIEDALRHF 85
D + ALMK GQ A +YQ N G+ + AL +
Sbjct: 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637
Query: 86 DRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYK 145
D + K + P +E F A L+D +
Sbjct: 638 DDMKKKGVKP--------------DEVFFSA---------------------LVDVAGHA 662
Query: 146 GFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVE-AESFAREMESQGFYVDKL 204
G LD+ E++ RK+ G+ Y SL A C N + + A +++S
Sbjct: 663 GDLDKAFEILQDARKQ-GIKLGTVSYSSLMGA-CSNAKNWKKALELYEDIKSIKLRPTVS 720
Query: 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQM 264
+LI C + A+ + M + G P++ T + L+ + D G L SQ
Sbjct: 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA 780
Query: 265 SDWGFQPN--MVTDLI-----MISNYCREGEV 289
+ G +PN M + C GE
Sbjct: 781 KEDGIKPNLVMCRCITGLCLRRFEKACALGEP 812
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 13/208 (6%)
Query: 131 NCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESF 190
+C S+N +I G G E LE+ MR+ + P L S+ A C+ + E
Sbjct: 252 DCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISA-CE---LLGDERL 306
Query: 191 AREMES----QGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIH 246
REM GF VD + SLI Y S + A ++F RM D+ + +I
Sbjct: 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMIS 362
Query: 247 GFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAP 306
G+ K GL DK Y+ M P+ +T ++S G++D + L L
Sbjct: 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422
Query: 307 SVHCYTVLIDALYKHNRLMEVDELYKKM 334
V LI+ K + + E++ +
Sbjct: 423 YVVVANALIEMYSKCKCIDKALEVFHNI 450
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 1e-05
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 608 PNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCR 657
P+VV Y LI+ + + G+ E A +L N M I+ ++ Y L+ G+C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 1e-05
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 233 GCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMS 265
G +PD T NTLI G + G D+ L +M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-05
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 239 YTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN 272
T NTLI G K G ++ L+ +M + G +P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 3e-05
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 22/72 (30%)
Query: 446 PLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSV 505
P V T NTLI + CK G ++ AL + ++M+ RG KP+V
Sbjct: 1 PDVVTYNTLIDGY----------------------CKKGKVEEALKLFNEMKKRGIKPNV 38
Query: 506 AIYDAIIGHLCK 517
Y +I LCK
Sbjct: 39 YTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 3e-05
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 789 DGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSM 821
G PD YNTL+ GLC+AGR+ + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTGC 234
Y SLI+GYC ++ A+ LF M + G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 507 IYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDE 540
Y+ +I LCK R+ EA ++FK M + GI+PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 8e-05
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 209 LINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSD-W 267
L+ GY ++ MA+ LF RM+++G PD T +L+ + G+ +G + M + +
Sbjct: 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619
Query: 268 GFQPNMVTDLIMISNYCREGEVDAALMLLN 297
PN+ ++ R G++ A +N
Sbjct: 620 SITPNLKHYACVVDLLGRAGKLTEAYNFIN 649
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 8e-05
Identities = 51/226 (22%), Positives = 84/226 (37%), Gaps = 40/226 (17%)
Query: 202 DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKG---- 257
D + +TS+I G N A+ +FFR + +P+S T + ++G G
Sbjct: 454 DVISWTSIIAGLRLNNRCFEAL-IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIH 512
Query: 258 -WVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLID 316
VL + + GF PN + DL Y R G ++ A NS V + +L+
Sbjct: 513 AHVLRTGIGFDGFLPNALLDL-----YVRCGRMNYAWNQFNSH-----EKDVVSWNILLT 562
Query: 317 ALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKI---- 372
H + EL+ +M+ + V PD + LL C + L F +
Sbjct: 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY---FHSMEEKY 619
Query: 373 ---------GCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDP 409
C +D L R+ G L + + + + DP
Sbjct: 620 SITPNLKHYACVVDLLGRA--------GKLTEAYNFINKMPITPDP 657
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 8e-05
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 127 GVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMR 159
G+ + +YN LIDGLC G +DE +E+++ M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 1e-04
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 102 SILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLC 143
+++ G + K EA F ++ G+ N ++Y++LIDGLC
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 541 VFFTTMINGYLQNRKPIEACQLFEKMKENSV 571
V + ++I+GY + K EA +LF++MKE V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 761 VTFCILINGHIAAGEIDQAIGLFNQMNADGCVPD 794
VT+ LI+G AG +++A+ LF +M G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 3e-04
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 306 PSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPD 342
P V Y LID K ++ E +L+ +M + P+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPN 37
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 578 YTALISGLVKKGMVDLGCMYLDRMLADGFVPNV 610
Y LI GL K G V+ M G P+V
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 76/467 (16%), Positives = 165/467 (35%), Gaps = 105/467 (22%)
Query: 430 EKAYVCLFQLVNF--GYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLD 487
E AYV LF+L + C+ + +G + NA++ + ++G L
Sbjct: 86 EDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG-VRLGNAMLSMF------VRFGELV 138
Query: 488 SALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFF---- 543
A + +M P+ + ++ ++G K EA ++ RML AG+ PD F
Sbjct: 139 HAWYVFGKM----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194
Query: 544 -------------------------------TTMINGYLQNRKPIEACQLFEKMKENSVQ 572
+I Y++ + A +F++M
Sbjct: 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC- 253
Query: 573 PGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRL 632
+ A+ISG + G G M P+++ T++I+ G+ +
Sbjct: 254 ---ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310
Query: 633 ENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRT 692
+V + VS VC + + +L + ++ E +F +++ V+ T
Sbjct: 311 HGYVVKT-------GFAVDVS-VCNSLI--QMYLSLGSWGEA--EKVFSRMETKDAVSWT 358
Query: 693 KSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMK 752
M + Y N G D A + + +M+
Sbjct: 359 A----------------------------MISGYEKN---------GLPDKALETYALME 381
Query: 753 REGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLS 812
++ + P+++T +++ G++D + L G + V N L++ + +
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441
Query: 813 HVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVH 859
VF+++ ++ + ++ ++ N A F++M++
Sbjct: 442 KALEVFHNIPEKDVI----SWTSIIAGLRLNNRCFEALIFFRQMLLT 484
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 4e-04
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 535 GIDPDEVFFTTMINGYLQNRKPIEACQLFEKMK 567
G+ PD V + T+I+G + + EA +L ++M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 6e-04
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 797 VYNTLLKGLCQAGRLSHVFSVFYSMHKRGF 826
YN+L+ G C+AG+L +F M ++G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.001
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCF 458
V + I CK GK E+A ++ G +P V+T + LI
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 543 FTTMINGYLQNRKPIEACQLFEKMKENSVQP 573
+ T+I+G + + EA +LF++MKE ++P
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEP 236
Y +L+ + +A+ + M +G +P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 234 CEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAAL 293
E D + N L+ G+ G L+++M + G P+ VT + ++ R G V L
Sbjct: 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609
Query: 294 MLLNS-KVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKN 352
+S + ++ P++ Y ++D L + +L E KM + PD + LL
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNA 666
Query: 353 C 353
C
Sbjct: 667 C 667
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 134 SYNVLIDGLCYKGFLDEVLEVVNIMRKK 161
+YN LI G C G L+E LE+ M++K
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 918 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.81 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.75 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.71 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.67 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.66 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.66 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.62 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.6 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.55 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.55 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.55 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.5 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.49 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.48 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.47 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.47 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.45 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.45 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.43 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.43 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.42 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.4 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.39 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.38 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.37 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.35 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.35 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.33 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.32 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.31 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.31 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.27 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.26 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.25 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.24 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.19 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.17 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.16 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.15 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.14 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.14 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.13 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.11 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.08 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.06 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.02 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.01 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.0 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.0 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.99 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.91 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.9 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.89 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.87 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.87 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.87 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.86 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.84 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.83 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.82 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.79 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.71 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.69 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.66 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.61 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.61 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.55 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.53 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.51 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.51 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.5 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.48 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.44 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.44 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.42 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.41 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.39 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.35 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.33 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.32 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.31 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.3 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.28 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.27 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.26 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.23 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.22 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.19 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.18 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.15 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.14 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.13 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.12 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.1 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.07 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.05 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.98 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.83 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.8 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.79 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.74 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.73 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.72 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.7 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.7 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.68 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.66 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.61 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.61 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.61 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.59 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.59 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.59 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.54 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.52 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.52 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.48 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.48 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.47 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.44 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.43 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.4 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.4 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.39 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.38 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.35 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.33 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.3 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.3 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.28 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.26 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.24 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.24 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.24 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.23 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.21 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.21 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.18 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.17 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.16 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.15 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.15 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.12 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.11 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.11 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.1 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.1 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.09 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.07 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.06 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.05 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.04 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.03 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.01 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.01 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.89 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.89 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.87 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.85 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.85 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.85 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.83 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.72 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.7 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.61 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.48 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.46 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.42 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.35 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.34 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.33 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.2 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.03 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.0 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.0 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.88 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.88 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.84 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.77 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.61 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.58 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.52 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.51 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.41 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.33 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.3 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.27 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.22 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.18 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.12 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.08 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.06 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.06 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.03 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.0 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.95 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.93 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.89 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.79 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.7 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.69 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.64 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.51 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 94.41 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.38 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.37 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.35 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.13 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.12 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.01 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.94 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.89 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.85 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.8 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.7 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.69 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.56 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.36 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.34 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.19 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.1 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.1 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.05 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.77 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.72 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.64 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.58 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.53 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.38 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.19 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.15 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.08 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.08 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.07 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.88 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.87 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.56 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.36 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.31 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.04 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.91 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.49 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.46 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.8 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.74 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.67 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.65 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.25 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.08 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.08 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.41 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.33 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.97 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.97 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 87.61 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 86.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.64 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 86.48 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.21 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 86.06 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 85.5 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.49 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 85.36 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.81 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.1 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.03 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.72 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.36 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.33 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.28 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 81.89 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.84 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.62 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.81 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.58 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.53 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-82 Score=737.20 Aligned_cols=680 Identities=17% Similarity=0.209 Sum_probs=646.4
Q ss_pred CCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHH
Q 043758 94 VPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKS 173 (918)
Q Consensus 94 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 173 (918)
.|+..+++.++.+|++.|++++|..+|+.|.+.|++|+..+|..++.+|.+.+..+.+.+++..+.+ .+..++...+++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~n~ 126 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS-SHPSLGVRLGNA 126 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHH-cCCCCCchHHHH
Confidence 4677799999999999999999999999999999999999999999999999999999999999998 788899999999
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 043758 174 LFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGL 253 (918)
Q Consensus 174 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 253 (918)
++.+|++.|+++.|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 99999999999999999999975 49999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 043758 254 FDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKK 333 (918)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (918)
+..+.+++..|.+.|+.||..++++|+.+|++.|+++.|.++|++|. .||..+||.+|.+|++.|++++|+++|++
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 48999999999999999999999999999
Q ss_pred HHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCch
Q 043758 334 MLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLAN 413 (918)
Q Consensus 334 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 413 (918)
|...|+.||..||+.++.+|.+.++.+.+.+++..+.+.|..+ +.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-----------------------------------d~ 323 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV-----------------------------------DV 323 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc-----------------------------------ch
Confidence 9999999999999999999999999988888887777766544 45
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDIL 493 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 493 (918)
.+|+.++.+|++.|++++|..+|++|. .||..+|+.++.+|.+.| ++++|..+|
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g----------------------~~~~A~~lf 377 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNG----------------------LPDKALETY 377 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCC----------------------CHHHHHHHH
Confidence 889999999999999999999999996 589999999999987654 677888899
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 043758 494 DQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQP 573 (918)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 573 (918)
++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ +
T Consensus 378 ~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~ 453 (857)
T PLN03077 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----K 453 (857)
T ss_pred HHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999974 6
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 043758 574 GSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVS 653 (918)
Q Consensus 574 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 653 (918)
|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|.+.|+.+.+.+++..+.+.|+.+|..++++|+.
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~ 532 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence 889999999999999999999999999986 5899999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 043758 654 GVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFL 733 (918)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 733 (918)
+|++. |++++|.++|+.+ .||..+||++|.
T Consensus 533 ~y~k~---------------------------------------------G~~~~A~~~f~~~-----~~d~~s~n~lI~ 562 (857)
T PLN03077 533 LYVRC---------------------------------------------GRMNYAWNQFNSH-----EKDVVSWNILLT 562 (857)
T ss_pred HHHHc---------------------------------------------CCHHHHHHHHHhc-----CCChhhHHHHHH
Confidence 98874 9999999999876 689999999999
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCChh
Q 043758 734 LLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNA-DGCVPDKTVYNTLLKGLCQAGRLS 812 (918)
Q Consensus 734 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~ 812 (918)
+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|+++
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999999994 599999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 813 HVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMH 892 (918)
Q Consensus 813 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 892 (918)
+|.+++++|. +.|+..+|++|+.+|...|+.+.+....+++.+.. |.++..|..|+++|...|+|++|.++++.|+
T Consensus 643 eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~-p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 643 EAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999994 89999999999999999999999999999999886 8889999999999999999999999999999
Q ss_pred hCCCCCCccc
Q 043758 893 KRGRLPCTST 902 (918)
Q Consensus 893 ~~~~~~~~~~ 902 (918)
+.|+.+.+..
T Consensus 719 ~~g~~k~~g~ 728 (857)
T PLN03077 719 ENGLTVDPGC 728 (857)
T ss_pred HcCCCCCCCc
Confidence 9999987654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-77 Score=693.58 Aligned_cols=713 Identities=18% Similarity=0.184 Sum_probs=650.2
Q ss_pred CcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHH
Q 043758 42 RFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFI 121 (918)
Q Consensus 42 ~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 121 (918)
.++..+++.++..+ .+.|++++|..+|+.+.+.+..|+..+|..+++++.+.+.++.+..++.
T Consensus 48 ~~~~~~~n~~i~~l-----------------~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 110 (857)
T PLN03077 48 SSSTHDSNSQLRAL-----------------CSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCS 110 (857)
T ss_pred ccchhhHHHHHHHH-----------------HhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHH
Confidence 44555677777777 5666677777778999998988999999999999999999999999999
Q ss_pred HHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCC
Q 043758 122 KICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYV 201 (918)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 201 (918)
.+...+..++...++.++..|++.|+.+.|.++|+.|.+ ||..+|+.++.+|++.|++++|.++|++|...|+.|
T Consensus 111 ~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P 185 (857)
T PLN03077 111 RALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185 (857)
T ss_pred HHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 999999889999999999999999999999999999964 799999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHH
Q 043758 202 DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMIS 281 (918)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 281 (918)
|..||+.++.++...+++..+.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++|++|. .||..+|++++.
T Consensus 186 d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~ 261 (857)
T PLN03077 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMIS 261 (857)
T ss_pred ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997 578899999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHH
Q 043758 282 NYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQH 361 (918)
Q Consensus 282 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 361 (918)
+|++.|++++|.++|++|...|+.||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.++.++.+.|+++.
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 043758 362 ALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVN 441 (918)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 441 (918)
|.++++.+.. ++..+|+.+|.+|++.|++++|+.+|++|.+
T Consensus 342 A~~vf~~m~~---------------------------------------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 342 AEKVFSRMET---------------------------------------KDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHhhCCC---------------------------------------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7776665432 2347899999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 043758 442 FGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRI 521 (918)
Q Consensus 442 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 521 (918)
.|+.||..+|+.++.+|++. |+++.|.++++.+.+.|+.|+..+|++|+.+|+++|++
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~----------------------g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 383 DNVSPDEITIASVLSACACL----------------------GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred hCCCCCceeHHHHHHHHhcc----------------------chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 99999999999999998765 46778888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 043758 522 LEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRM 601 (918)
Q Consensus 522 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 601 (918)
++|.++|++|. .+|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+
T Consensus 441 ~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 441 DKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred HHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 99999999996 46889999999999999999999999999986 58999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHH
Q 043758 602 LADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFH 681 (918)
Q Consensus 602 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (918)
.+.|+.++..++++|+++|.+.|++++|.++|+.+ .||..+|++++.+|++.
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~----------------------- 567 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAH----------------------- 567 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHc-----------------------
Confidence 99999999999999999999999999999999987 78999999999999875
Q ss_pred HhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH-HcCCCCcH
Q 043758 682 KLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMK-REGLRPNQ 760 (918)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~ 760 (918)
|+.++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|. ..|+.|+.
T Consensus 568 ----------------------G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 568 ----------------------GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred ----------------------CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 9999999999999999999999999999999999999999999999999 67999999
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 043758 761 VTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKK-ATYEHLLEC 839 (918)
Q Consensus 761 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 839 (918)
.+|+.++++|++.|++++|.+++++|. ++||..+|++|+.+|...|+.+.+....+++.+ +.|+. ..|..+...
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ 700 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNL 700 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHH
Confidence 999999999999999999999999983 789999999999999999999999999988886 56754 456666679
Q ss_pred HHccCChhhHHHHHHHHHhCCCCCCcccHHHHH----HHHHhcC----C----HHHHHHHHHHHHhCCCCCCcc
Q 043758 840 FCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLL----NILCQEK----H----FHEAQIVLDVMHKRGRLPCTS 901 (918)
Q Consensus 840 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g----~----~~~A~~~~~~~~~~~~~~~~~ 901 (918)
|...|++++|.++.+.|.+.|+.+++.....-+ ..+...+ + ++.-.++..+|++.|..|+..
T Consensus 701 ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 701 YADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred HHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 999999999999999999999888764322111 1111111 1 233345777889999998754
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=581.08 Aligned_cols=544 Identities=19% Similarity=0.223 Sum_probs=421.3
Q ss_pred CcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCC-CCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHH
Q 043758 130 LNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKG-LVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTS 208 (918)
Q Consensus 130 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (918)
++...|..++..|++.|++++|+++|+.|.+ .+ ..++..+++.++.+|.+.|.+++|..+|+.|.. ||..+|+.
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~-~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEK-RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 4555666666666666777777777777766 34 344555556666666666677777766666654 46677777
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC
Q 043758 209 LINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGE 288 (918)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 288 (918)
++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 77777777777777777777776666677777777777777777777777777777766666777777777777777777
Q ss_pred HHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCChhhHHHHHhhCCCCccHHHHHHHH
Q 043758 289 VDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLA--NRVAPDHLLSFILLKNCPEGTELQHALMLL 366 (918)
Q Consensus 289 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 366 (918)
+++|.++|+.|...|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||.
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~----------------------- 579 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH----------------------- 579 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-----------------------
Confidence 777777777776666667777777777777777777777777777654 3455554
Q ss_pred HHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 043758 367 CEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRP 446 (918)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 446 (918)
.+|+.+|.+|++.|++++|.++|+.|.+.|+.|
T Consensus 580 -----------------------------------------------vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 580 -----------------------------------------------ITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred -----------------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 556788888899999999999999999999999
Q ss_pred CcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043758 447 LVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAED 526 (918)
Q Consensus 447 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 526 (918)
+..+|+.+|.+|++. |++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 613 ~~~tynsLI~ay~k~----------------------G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 613 TPEVYTIAVNSCSQK----------------------GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred ChHHHHHHHHHHHhc----------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999988655 4667788888888888999999999999999999999999999
Q ss_pred HHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043758 527 MFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGF 606 (918)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 606 (918)
+|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999998899
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcC
Q 043758 607 VPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQG 686 (918)
Q Consensus 607 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (918)
.||..+|+.++.+|.+.|++++|.++++.|.+.|+.||..+|++++..|.+
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~----------------------------- 801 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR----------------------------- 801 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998855332
Q ss_pred cccccchhhhHHHHHhCCChhHHHHHHHHHH--hcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHH
Q 043758 687 TLVTRTKSTAFSAVFSNGKKGTVQKIVLKVK--DIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFC 764 (918)
Q Consensus 687 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 764 (918)
.++++.++.+.+. +.+...+.. +..+.|+.+|++|++.|+.||..+|+
T Consensus 802 ------------------~y~ka~~l~~~v~~f~~g~~~~~n------------~w~~~Al~lf~eM~~~Gi~Pd~~T~~ 851 (1060)
T PLN03218 802 ------------------RFEKACALGEPVVSFDSGRPQIEN------------KWTSWALMVYRETISAGTLPTMEVLS 851 (1060)
T ss_pred ------------------HHHHHhhhhhhhhhhhcccccccc------------chHHHHHHHHHHHHHCCCCCCHHHHH
Confidence 1111221111111 011111112 23456999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 043758 765 ILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKA 831 (918)
Q Consensus 765 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 831 (918)
.++.++++.+..+.+..+++.|...+..|+..+|+.+++++.+. .++|..++++|.+.|+.|+..
T Consensus 852 ~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 852 QVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99988888889999999999888888888999999999987432 468999999999999999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-65 Score=578.03 Aligned_cols=548 Identities=17% Similarity=0.217 Sum_probs=461.1
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHH
Q 043758 200 YVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGC-EPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLI 278 (918)
Q Consensus 200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (918)
.++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|..++|..+++.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 34667788888888888888888888888887774 45666777788888888888888888887763 78888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCcc
Q 043758 279 MISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTE 358 (918)
Q Consensus 279 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 358 (918)
++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvT------------- 509 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT------------- 509 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH-------------
Confidence 8888888888888888888888888888888888888888888888888888888888877777644
Q ss_pred HHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHH
Q 043758 359 LQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQ 438 (918)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (918)
|+.+|.+|++.|++++|..+|+.
T Consensus 510 ---------------------------------------------------------ynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 510 ---------------------------------------------------------FGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred ---------------------------------------------------------HHHHHHHHHHCcCHHHHHHHHHH
Confidence 47777888888888888888888
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHH
Q 043758 439 LVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEV--RGPKPSVAIYDAIIGHLC 516 (918)
Q Consensus 439 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~ 516 (918)
|.+.|+.||..+|+.+|.+|++.| ++++|.++|++|.. .|+.||..+|++++.+|+
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G----------------------~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSG----------------------AVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 888888888888888888887654 55666677777765 567889999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHH
Q 043758 517 KEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCM 596 (918)
Q Consensus 517 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 596 (918)
+.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhh
Q 043758 597 YLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGK 676 (918)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 676 (918)
+|+.|.+.|+.|+..+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~------------------ 732 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG------------------ 732 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC------------------
Confidence 99999999999999999999999999999999999999998888999999999999888775
Q ss_pred HHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 043758 677 EMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGL 756 (918)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 756 (918)
|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.+++++|.+.|+
T Consensus 733 ---------------------------G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 733 ---------------------------NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred ---------------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 88888999999998899999999999999999999999999999999999999
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 043758 757 RPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHL 836 (918)
Q Consensus 757 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 836 (918)
.||..+|+.++..|. +.+++|..+.+.+..- .+ .......+..++|..+|++|.+.|+.||..||..+
T Consensus 786 ~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f--~~--------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v 853 (1060)
T PLN03218 786 KPNLVMCRCITGLCL--RRFEKACALGEPVVSF--DS--------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQV 853 (1060)
T ss_pred CCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh--hc--------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 999999999987654 3566666665544432 10 01111122345699999999999999999999999
Q ss_pred HHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCccc
Q 043758 837 LECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRLPCTST 902 (918)
Q Consensus 837 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 902 (918)
+.++++.+....+..+++.+...+.+|+..+|+.|++++.+. .++|..++++|.+.|+.|+..+
T Consensus 854 L~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~ 917 (1060)
T PLN03218 854 LGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSF 917 (1060)
T ss_pred HHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCccc
Confidence 999999999999999999988777789999999999998432 4689999999999999999874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-60 Score=537.60 Aligned_cols=479 Identities=18% Similarity=0.219 Sum_probs=427.1
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHH
Q 043758 200 YVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTG-CEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLI 278 (918)
Q Consensus 200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (918)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3466789999999999999999999999998754 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCcc
Q 043758 279 MISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTE 358 (918)
Q Consensus 279 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 358 (918)
++.+|++.|+++.|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll-------- 231 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML-------- 231 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH--------
Confidence 99999999999999999999974 899999999999999999999999999998777766665553333
Q ss_pred HHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHH
Q 043758 359 LQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQ 438 (918)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (918)
.++.+.|..
T Consensus 232 --------------------------------------------------------------~a~~~~~~~--------- 240 (697)
T PLN03081 232 --------------------------------------------------------------RASAGLGSA--------- 240 (697)
T ss_pred --------------------------------------------------------------HHHhcCCcH---------
Confidence 333333333
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043758 439 LVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKE 518 (918)
Q Consensus 439 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 518 (918)
+.+.+++..+.+.|..||..+|++++.+|+++
T Consensus 241 ------------------------------------------------~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 272 (697)
T PLN03081 241 ------------------------------------------------RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272 (697)
T ss_pred ------------------------------------------------HHHHHHHHHHHHhCCCccceeHHHHHHHHHHC
Confidence 33344444555556677777888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHH
Q 043758 519 KRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYL 598 (918)
Q Consensus 519 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 598 (918)
|++++|.++|++|. .+|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++
T Consensus 273 g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 273 GDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred CCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 88888888888885 46889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHH
Q 043758 599 DRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEM 678 (918)
Q Consensus 599 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (918)
..|.+.|+.||..+|+.|+++|.+.|++++|.++|++|.
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----------------------------------------- 387 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----------------------------------------- 387 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-----------------------------------------
Confidence 999999999999999999999999999999999988874
Q ss_pred HHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 043758 679 LFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRP 758 (918)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 758 (918)
.||..+||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 388 -------------------------------------------~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 388 -------------------------------------------RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred -------------------------------------------CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4688899999999999999999999999999999999
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043758 759 NQVTFCILINGHIAAGEIDQAIGLFNQMNAD-GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLL 837 (918)
Q Consensus 759 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 837 (918)
|..||+.++.+|++.|++++|.++|+.|.+. |+.|+..+|++++++|++.|++++|.+++++| ++.|+..+|+.++
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll 501 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALL 501 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHH
Confidence 9999999999999999999999999999875 99999999999999999999999999999887 5899999999999
Q ss_pred HHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc
Q 043758 838 ECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRLPCTS 901 (918)
Q Consensus 838 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 901 (918)
.+|+..|+++.|...++++.+.+ |.+...|..|+++|.+.|+|++|.++++.|++.|+.+.+.
T Consensus 502 ~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 502 TACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999998776 7778999999999999999999999999999999865433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-58 Score=521.32 Aligned_cols=513 Identities=19% Similarity=0.280 Sum_probs=435.2
Q ss_pred CChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC-CCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHH
Q 043758 95 PIKLACVSILRGLFAEEKFLEAFDYFIKICNAG-VDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKS 173 (918)
Q Consensus 95 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 173 (918)
++...|+.++..|.+.|++++|+++|+.|...+ +.||..+|+.++.+|.+.++.+.|.+++..|.+ .|+.||..+|+.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-~g~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-SGFEPDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCcchHHHHH
Confidence 456689999999999999999999999998754 678999999999999999999999999999998 899999999999
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 043758 174 LFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGL 253 (918)
Q Consensus 174 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 253 (918)
++.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999975 59999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 043758 254 FDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKK 333 (918)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (918)
.+.+.+++..+.+.|+.||..++++|+.+|+++|++++|.++|++|. ++|+.+||.|+.+|++.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 47899999999999999999999999999
Q ss_pred HHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCch
Q 043758 334 MLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLAN 413 (918)
Q Consensus 334 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 413 (918)
|.+.|+.||..||
T Consensus 316 M~~~g~~pd~~t~------------------------------------------------------------------- 328 (697)
T PLN03081 316 MRDSGVSIDQFTF------------------------------------------------------------------- 328 (697)
T ss_pred HHHcCCCCCHHHH-------------------------------------------------------------------
Confidence 9999999988665
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDIL 493 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 493 (918)
+.++.+|++.|++++|..++..|.+.|+.||..++++++.+|++.| ++++|..+|
T Consensus 329 ---~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G----------------------~~~~A~~vf 383 (697)
T PLN03081 329 ---SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG----------------------RMEDARNVF 383 (697)
T ss_pred ---HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC----------------------CHHHHHHHH
Confidence 6667788888899999999999999998888888888888876655 455555566
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh-CCCC
Q 043758 494 DQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKE-NSVQ 572 (918)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~ 572 (918)
++|. .||..+||+++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.
T Consensus 384 ~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~ 459 (697)
T PLN03081 384 DRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459 (697)
T ss_pred HhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 6553 3578888888888888888888888888888888888888888888888888888888888888875 5888
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 043758 573 PGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALV 652 (918)
Q Consensus 573 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 652 (918)
|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|..+++++.+. .
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~---------- 524 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--G---------- 524 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--C----------
Confidence 88888888888888888888888887765 56788888888888888888888888877776421 1
Q ss_pred HHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 043758 653 SGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIF 732 (918)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 732 (918)
+.+..+|..++
T Consensus 525 ---------------------------------------------------------------------p~~~~~y~~L~ 535 (697)
T PLN03081 525 ---------------------------------------------------------------------PEKLNNYVVLL 535 (697)
T ss_pred ---------------------------------------------------------------------CCCCcchHHHH
Confidence 22467889999
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCcHH-hHHHH-------HHH---HHh-cCCHHHHHHHHHHHHhCCCCCCHH
Q 043758 733 LLLCGVGRMDDAYDHFQMMKREGLRPNQV-TFCIL-------ING---HIA-AGEIDQAIGLFNQMNADGCVPDKT 796 (918)
Q Consensus 733 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l-------i~~---~~~-~g~~~~A~~~~~~~~~~~~~p~~~ 796 (918)
+.|++.|++++|.+++++|.+.|+++... +|..+ +.+ +.. ..-++...++..+|.+.|..|+..
T Consensus 536 ~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 536 NLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999998764332 22111 000 000 011334456677777777777653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=442.54 Aligned_cols=839 Identities=12% Similarity=0.019 Sum_probs=548.8
Q ss_pred hhhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhh-----------
Q 043758 2 QLINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQN----------- 70 (918)
Q Consensus 2 ~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~----------- 70 (918)
.++.+|++.+|...|++++...|....+ +..+..++...|++++|...|..
T Consensus 31 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 92 (899)
T TIGR02917 31 SYLQKNKYKAAIIQLKNALQKDPNDAEA------------------RFLLGKIYLALGDYAAAEKELRKALSLGYPKNQV 92 (899)
T ss_pred HHHHcCChHhHHHHHHHHHHhCCCCHHH------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhh
Confidence 3567788888888888888877774443 33333444444444444443333
Q ss_pred ------hhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc
Q 043758 71 ------DFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY 144 (918)
Q Consensus 71 ------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 144 (918)
++...|++++|...+..............+..+...+...|++++|...|+++.+.. +.+...+..++..+..
T Consensus 93 ~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 171 (899)
T TIGR02917 93 LPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALA 171 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHH
Confidence 335566666666666554322222344455566666666666666666666666554 3344556666666666
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 043758 145 KGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMR 224 (918)
Q Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 224 (918)
.|++++|.++++.+.+ ..+++...+..+...+...|++++|...|++..+..+. +..++..++..+...|++++|..
T Consensus 172 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~ 248 (899)
T TIGR02917 172 ENRFDEARALIDEVLT--ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN-NPAVLLALATILIEAGEFEEAEK 248 (899)
T ss_pred CCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666654 22334455555556666666666666666666655432 55566666666666666666666
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 043758 225 LFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNL 304 (918)
Q Consensus 225 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 304 (918)
.++++.+... .+...+......+...|++++|...++.+.+.+ +.+...+..+...+...|+++.|...|+.+....
T Consensus 249 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~- 325 (899)
T TIGR02917 249 HADALLKKAP-NSPLAHYLKALVDFQKKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA- 325 (899)
T ss_pred HHHHHHHhCC-CCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 6666665421 122222233334445666666666666666543 2222333344455566666666666666665543
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHH
Q 043758 305 APSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSIS 384 (918)
Q Consensus 305 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 384 (918)
+.+...+..+...+...|++++|...+..+.... +.+...+..+...+...|+++.|...+..+.+..... .......
T Consensus 326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l 403 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN-AAARTQL 403 (899)
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHH
Confidence 3344455556666666666666666666665432 2233445555555566666666666666665543322 1222222
Q ss_pred hhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh
Q 043758 385 ATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFL 464 (918)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 464 (918)
+......+..+++...+..+....+... .....++..+.+.|++++|+.+++.+.... +++..++..+...+...|++
T Consensus 404 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 481 (899)
T TIGR02917 404 GISKLSQGDPSEAIADLETAAQLDPELG-RADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDL 481 (899)
T ss_pred HHHHHhCCChHHHHHHHHHHHhhCCcch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCH
Confidence 2222233345556666666655544332 344455666667777777777777666542 34555666666667777777
Q ss_pred hhHHHHHHHhhcc------------cCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 465 EGANAIVELMQDT------------EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRML 532 (918)
Q Consensus 465 ~~a~~~~~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 532 (918)
++|...++.+.+. ..+...|++++|...++++...++. +..++..+...+.+.|++++|...++++.
T Consensus 482 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 560 (899)
T TIGR02917 482 AKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAA 560 (899)
T ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776665443 3345567777788888777776433 66777777778888888888888888877
Q ss_pred HCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 043758 533 KAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVL 612 (918)
Q Consensus 533 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 612 (918)
+.+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..+..++...|++++|...|+.+.+.. +.+...
T Consensus 561 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 637 (899)
T TIGR02917 561 ELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALA 637 (899)
T ss_pred HhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 654 4455667777777888888888888888877653 4456677777778888888888888888877653 445667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCccccc
Q 043758 613 YTALINHFLRAGEFEFASRLENLMVTNQIEF-DLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTR 691 (918)
Q Consensus 613 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (918)
+..+..++.+.|++++|...++++.+. .| +..++..+...+...+.. ......+.......+....
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~-----------~~A~~~~~~~~~~~~~~~~ 704 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRT-----------ESAKKIAKSLQKQHPKAAL 704 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHhhCcCChH
Confidence 777777788888888888888877753 33 345555565555544321 1222223333333444455
Q ss_pred chhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 043758 692 TKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHI 771 (918)
Q Consensus 692 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 771 (918)
........+...|++++|.+.++.+.+.. |+...+..++.++.+.|++++|...++++.+.. +.+...+..+...|.
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYL 781 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 55666777888899999999999887654 444777888999999999999999999998753 446668888888999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHH
Q 043758 772 AAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFN 851 (918)
Q Consensus 772 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~ 851 (918)
..|++++|.+.|+++.+.. +.++..++.+...+...|+ .+|+.+++++.+. .+.+..++..+..++.+.|++++|..
T Consensus 782 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred HCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998863 3477889999999999999 8899999999864 23355577778888999999999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 852 MFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 893 (918)
.++++++.+ |.++.++..++.+|.+.|++++|.+++++|++
T Consensus 859 ~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 859 LLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 999999987 77999999999999999999999999999864
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=419.77 Aligned_cols=815 Identities=13% Similarity=0.027 Sum_probs=657.9
Q ss_pred HHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCC
Q 043758 49 SALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGV 128 (918)
Q Consensus 49 ~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 128 (918)
..+-+++...+...++...++.++.+.|++++|...|+.+.+.++. +...+..++.++...|++++|+..+........
T Consensus 43 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~ 121 (899)
T TIGR02917 43 IQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-KNQVLPLLARAYLLQGKFQQVLDELPGKTLLDD 121 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hhhhHHHHHHHHHHCCCHHHHHHhhcccccCCc
Confidence 3344444555566666666666779999999999999999988764 455667788899999999999999987653333
Q ss_pred CCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHH
Q 043758 129 DLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTS 208 (918)
Q Consensus 129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (918)
+.....+..+...+...|++++|.+.|+.+.+ . .+.+...+..+...+...|++++|..+++++.+..+ ++...+..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 198 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALA-I-DPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP-GNVDALLL 198 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHH
Confidence 45556788888889999999999999999986 2 234556778888889999999999999999988754 37788888
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC
Q 043758 209 LINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGE 288 (918)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 288 (918)
+...+...|++++|...|++..+.. +.+..++..++..+...|++++|...++.+.+.. +.+...+......+...|+
T Consensus 199 ~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 276 (899)
T TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKN 276 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcC
Confidence 9999999999999999999998764 3456678888888999999999999999998764 3344445555566778899
Q ss_pred HHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHH
Q 043758 289 VDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCE 368 (918)
Q Consensus 289 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 368 (918)
+++|...|+.+.+.+ +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++.+...+..
T Consensus 277 ~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (899)
T TIGR02917 277 YEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSP 354 (899)
T ss_pred HHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999988765 2334455566778889999999999999988753 23344556666777889999999999998
Q ss_pred HHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCc
Q 043758 369 FAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLV 448 (918)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 448 (918)
+........ ......+......+..+++...++.+...++. +...+..+...+...|++++|+..|+.+.+.. +...
T Consensus 355 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 431 (899)
T TIGR02917 355 ALGLDPDDP-AALSLLGEAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELG 431 (899)
T ss_pred HHhcCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-Ccch
Confidence 877654433 33333333334455678899999988877654 45677888889999999999999999988764 2234
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhcc------------cCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043758 449 FTCNTLIKCFYQVGFLEGANAIVELMQDT------------EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLC 516 (918)
Q Consensus 449 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 516 (918)
.....++..+.+.|++++|..+++.+... ..+...|++++|...|+++.+..+. +...+..++..+.
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 510 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDI 510 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHH
Confidence 45566778889999999999999888654 5566889999999999999887543 6777888899999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHH
Q 043758 517 KEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCM 596 (918)
Q Consensus 517 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 596 (918)
..|++++|.+.|+++.+.. +.+..++..+...+...|+.++|...++++.+.+ +.+...+..++..+...|++++|..
T Consensus 511 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998864 5577888899999999999999999999998764 4556778888999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhh
Q 043758 597 YLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGK 676 (918)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 676 (918)
+++.+.+.. +.+..+|..+..++.+.|++++|+..|+.+.+.. ..+...+..+...+...+.. ....
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~-----------~~A~ 655 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY-----------AKAI 655 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH-----------HHHH
Confidence 999998753 5678899999999999999999999999998643 22344566666666554321 2233
Q ss_pred HHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 043758 677 EMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGL 756 (918)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 756 (918)
..+.+.+...+............+...|+++.|.++++.+.+.. +++...+..+...+...|++++|...|+++...
T Consensus 656 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-- 732 (899)
T TIGR02917 656 TSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR-- 732 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 44455566677777788888999999999999999999998665 567788899999999999999999999999985
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 043758 757 RPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHL 836 (918)
Q Consensus 757 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 836 (918)
.|+..++..++.++.+.|++++|.+.++++.+. .+.+...+..+...|...|++++|...++++.+. .+++...+..+
T Consensus 733 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l 810 (899)
T TIGR02917 733 APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-APDNAVVLNNL 810 (899)
T ss_pred CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 466577788899999999999999999999886 3347788999999999999999999999999875 35577789999
Q ss_pred HHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043758 837 LECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 837 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 897 (918)
...+.+.|+ .+|+..++++.... |.++..+..++.+|...|++++|..+++++.+.+..
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999 88999999999876 778888999999999999999999999999998854
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-26 Score=277.81 Aligned_cols=657 Identities=11% Similarity=-0.000 Sum_probs=382.5
Q ss_pred HHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhh----------------HHHHHHHhhchhc
Q 043758 49 SALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLA----------------CVSILRGLFAEEK 112 (918)
Q Consensus 49 ~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~g~ 112 (918)
..+-+.+...++..+++.....+..+.|+.++|.+.++++.+..+. ++.+ ...+++.+...|+
T Consensus 49 ~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~ 127 (1157)
T PRK11447 49 QSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGR 127 (1157)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 3333444444444444444444446667777777777777666533 2222 2344556778888
Q ss_pred HHHHHHHHHHHhhcCCCCcch-hHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHH
Q 043758 113 FLEAFDYFIKICNAGVDLNCW-SYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFA 191 (918)
Q Consensus 113 ~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 191 (918)
+++|+..|+.+.... +++.. ............|+.++|++.|+++.+. .+.+...+..+...+...|++++|...+
T Consensus 128 ~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~~~~~~LA~ll~~~g~~~eAl~~l 204 (1157)
T PRK11447 128 TEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNTGLRNTLALLLFSSGRRDEGFAVL 204 (1157)
T ss_pred HHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 888888888887664 33322 1111222233458888888888888862 2444556677778888888888888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043758 192 REMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSY-TCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQ 270 (918)
Q Consensus 192 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 270 (918)
+++.+... . +...+...++.+...+..+... .+...+..+-.....+.+...+..+......
T Consensus 205 ~~~~~~~~--~---------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 205 EQMAKSPA--G---------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHhhCCC--c---------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 88866421 1 0111222222222221111111 2222222222222344556666655443223
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHH
Q 043758 271 PNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDH-LLSFIL 349 (918)
Q Consensus 271 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l 349 (918)
|+.. .......+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+....... ..+..+
T Consensus 268 p~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 268 PAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred cchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 3322 2234566778999999999999988875 457788899999999999999999999998865322111 111111
Q ss_pred HhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCCh
Q 043758 350 LKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKY 429 (918)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 429 (918)
+... .-.........+.+.|++
T Consensus 346 l~~~----------------------------------------------------------~~~~~~~~g~~~~~~g~~ 367 (1157)
T PRK11447 346 LKVN----------------------------------------------------------RYWLLIQQGDAALKANNL 367 (1157)
T ss_pred HHhh----------------------------------------------------------hHHHHHHHHHHHHHCCCH
Confidence 0000 001112234566788899
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 043758 430 EKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYD 509 (918)
Q Consensus 430 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 509 (918)
++|+..|+++.+.. +.+...+..+..++.. .|++++|...|+++.+..+. +...+.
T Consensus 368 ~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~----------------------~g~~~eA~~~y~~aL~~~p~-~~~a~~ 423 (1157)
T PRK11447 368 AQAERLYQQARQVD-NTDSYAVLGLGDVAMA----------------------RKDYAAAERYYQQALRMDPG-NTNAVR 423 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH----------------------CCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 99999999888763 2333444445555444 45666777777777765433 555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--------CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHH
Q 043758 510 AIIGHLCKEKRILEAEDMFKRMLKAGI--------DPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTAL 581 (918)
Q Consensus 510 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 581 (918)
.+...+. .++.++|..+++.+..... ......+..+...+...|++++|++.|++.++.. +-+...+..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~L 501 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRL 501 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 6666664 4577888888776543210 0012234556677888999999999999998864 2245566778
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhccc
Q 043758 582 ISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITG 661 (918)
Q Consensus 582 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 661 (918)
...|...|++++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++......-+.
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~-------- 572 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ-------- 572 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh--------
Confidence 888999999999999999988753 33555555566667788999999998887653322222111100000
Q ss_pred ccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 043758 662 RKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRM 741 (918)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 741 (918)
..........+...|+.++|.++++. .++++..+..+...+.+.|++
T Consensus 573 ----------------------------~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~ 619 (1157)
T PRK11447 573 ----------------------------SDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDY 619 (1157)
T ss_pred ----------------------------hhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCH
Confidence 00012233445555666666666651 233445555566666666666
Q ss_pred hHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 043758 742 DDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTLLKGLCQAGRLSHVFSVFYS 820 (918)
Q Consensus 742 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 820 (918)
++|+..|++..+.. +.+...+..++..+...|++++|++.++.+.+. .| +...+..+..++...|++++|.+++++
T Consensus 620 ~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 620 AAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66666666666531 223445556666666666666666666655543 22 334455555666666666666666666
Q ss_pred HHhCCC--CC---CHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 043758 821 MHKRGF--VP---KKATYEHLLECFCANCLSIPAFNMFKEMI 857 (918)
Q Consensus 821 ~~~~~~--~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 857 (918)
+.+..- .| +...+..+...+...|++++|...+++.+
T Consensus 697 al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 697 LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 654211 11 11234444555566666666666666654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-25 Score=267.05 Aligned_cols=469 Identities=15% Similarity=0.040 Sum_probs=287.7
Q ss_pred hhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHh----------------h
Q 043758 4 INRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALL----------------L 67 (918)
Q Consensus 4 ~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~----------------~ 67 (918)
..+++.+.|++.+++++...|+...++.....+.....+++ .+-..+-+.....++..++.. .
T Consensus 39 ~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~-~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 39 EATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSD-GAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred HhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHH
Confidence 35678888888888888888777776655444333322222 233334444444555444422 2
Q ss_pred hhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCC
Q 043758 68 YQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGF 147 (918)
Q Consensus 68 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 147 (918)
..+++.+.|++++|...|+.+...++.........+.......|+.++|+..|+++.... +.+...+..+...+...|+
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCC
Confidence 234568889999999999998876543221121111222234588999999999998875 5567778888888999999
Q ss_pred hhHHHHHHHHHHhcC---------------CCCCCc---ccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 043758 148 LDEVLEVVNIMRKKK---------------GLVPAL---HPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSL 209 (918)
Q Consensus 148 ~~~A~~~~~~~~~~~---------------~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 209 (918)
.++|++.++++.+.. ...++. ..+...+..+-.....+.|...+.+.......|+.. ....
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~ 275 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQ 275 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHH
Confidence 999999998875411 112222 233334444444445667777777766543333322 2344
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHh------------hH
Q 043758 210 INGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQP-NMV------------TD 276 (918)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~------------~~ 276 (918)
...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|++..+..... ... ..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 567778999999999999998763 2356788888889999999999999999988764211 111 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHhhCCC
Q 043758 277 LIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDH-LLSFILLKNCPE 355 (918)
Q Consensus 277 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~ 355 (918)
......+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++.+.. |+. ..+..+...+.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-
Confidence 233567888999999999999998875 4566777888899999999999999999998743 332 23333333332
Q ss_pred CccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHH
Q 043758 356 GTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVC 435 (918)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (918)
.++.++|...+..+..... ......... .....+..+...+...|++++|+..
T Consensus 431 ~~~~~~A~~~l~~l~~~~~--------------------~~~~~~~~~-------l~~~~~~~~a~~~~~~g~~~eA~~~ 483 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQR--------------------RSIDDIERS-------LQNDRLAQQAEALENQGKWAQAAEL 483 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHH--------------------HHHHHHHHH-------hhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 3355666555543222100 000000000 0012345566667777777777777
Q ss_pred HHHHHHCCCCCC-cccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043758 436 LFQLVNFGYRPL-VFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGH 514 (918)
Q Consensus 436 ~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 514 (918)
|++..+.. |+ ...+..+...+... |++++|...++++.+..+. +...+..+...
T Consensus 484 ~~~Al~~~--P~~~~~~~~LA~~~~~~----------------------G~~~~A~~~l~~al~~~P~-~~~~~~a~al~ 538 (1157)
T PRK11447 484 QRQRLALD--PGSVWLTYRLAQDLRQA----------------------GQRSQADALMRRLAQQKPN-DPEQVYAYGLY 538 (1157)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHc----------------------CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 77777642 33 33333444444333 4555555566665554322 44444444445
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 043758 515 LCKEKRILEAEDMFKRML 532 (918)
Q Consensus 515 ~~~~~~~~~a~~~~~~~~ 532 (918)
+...++.++|...++.+.
T Consensus 539 l~~~~~~~~Al~~l~~l~ 556 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLP 556 (1157)
T ss_pred HHhCCCHHHHHHHHHhCC
Confidence 556677777777666554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-23 Score=236.55 Aligned_cols=266 Identities=9% Similarity=-0.022 Sum_probs=175.2
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 043758 574 GSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVS 653 (918)
Q Consensus 574 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 653 (918)
+...|..+..++.. ++.++|...+...... .|+......+...+...|++++|...|+++... .|+...+..+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~l-- 548 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAA-- 548 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHH--
Confidence 34455555555554 6666677766666554 344333333344445677777777777766432 1221111111
Q ss_pred HHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 043758 654 GVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFL 733 (918)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 733 (918)
...+...|+.+.|...++...+.. +++...+..+..
T Consensus 549 -------------------------------------------a~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~ 584 (987)
T PRK09782 549 -------------------------------------------ANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHA 584 (987)
T ss_pred -------------------------------------------HHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 122334477777777777666543 223333333444
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChh
Q 043758 734 LLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTLLKGLCQAGRLS 812 (918)
Q Consensus 734 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 812 (918)
.+...|++++|...+++..+ +.|+...+..+..++.+.|++++|+..+++.... .| +...++.+..++...|+++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHH
Confidence 44556888888888888877 4566667777788888888888888888888774 34 4567777777888888888
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 043758 813 HVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVM 891 (918)
Q Consensus 813 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 891 (918)
+|+..+++..+ ..| +...+..+..++...|++++|+..+++.+... |.+..+....+++..+..+++.|.+-+.+.
T Consensus 661 eAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 661 QSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888888876 344 55577777778888888888888888888776 666777888888888888888888877776
Q ss_pred HhCCCC
Q 043758 892 HKRGRL 897 (918)
Q Consensus 892 ~~~~~~ 897 (918)
-..++.
T Consensus 738 ~~~~~~ 743 (987)
T PRK09782 738 WTFSFD 743 (987)
T ss_pred hhcCcc
Confidence 555443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-23 Score=232.67 Aligned_cols=684 Identities=11% Similarity=-0.026 Sum_probs=398.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
...|++++|...|+.+++.+|. ++.++..+.+.|...|++++|+..+++..+.. |+...|..++..+ ++.++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHH
Confidence 5569999999999999999876 58889999999999999999999999999875 3444444444333 9999999
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHH--------HhccCchHHHHHHHHHHHhCCCCCChhhHHHH-HHHHhcCCChHHHH
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYA--------LCKNIRTVEAESFAREMESQGFYVDKLMYTSL-INGYCSNRNMKMAM 223 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~ 223 (918)
++++++.+. .+.+..++..+... |.+. ++|.+.++ .....+.|++.+.... ...|.+.|++++|+
T Consensus 129 ~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 129 TTVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 999999973 23334555444444 5544 66666666 4443344455555555 89999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 224 RLFFRMLKTGCEPDSYTCNTLIHGFFK-MGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 224 ~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
.++.++.+.+. .+......+..+|.. .++ +.+..+++. .++.++..+..+...|.+.|+.++|.++++++...
T Consensus 203 ~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 203 TLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 99999999852 344456666667776 466 777777553 33467888999999999999999999999998765
Q ss_pred CCC-CCcchHHHHHHHHHhcCChh-HHHHHHHHHHhCCCCCChh-hHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChh
Q 043758 303 NLA-PSVHCYTVLIDALYKHNRLM-EVDELYKKMLANRVAPDHL-LSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPL 379 (918)
Q Consensus 303 ~~~-~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 379 (918)
... |...+|..+ +.+.+... .|..-|.+ ...++.. .....+..+.+.++++.+.++.. +.+...
T Consensus 277 ~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 343 (987)
T PRK09782 277 FTTDAQEKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANE 343 (987)
T ss_pred ccCCCccHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcch
Confidence 322 444555433 33434332 11111111 0111111 11122455566677765554421 222222
Q ss_pred hhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHC-C-CCCCcccHHHHHHH
Q 043758 380 ARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNF-G-YRPLVFTCNTLIKC 457 (918)
Q Consensus 380 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~li~~ 457 (918)
............+...++......+....+.. ......+.-...+.|+.++|..+|++.... + ..++......++..
T Consensus 344 ~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 344 MLEERYAVSVATRNKAEALRLARLLYQQEPAN-LTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASL 422 (987)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHH
Confidence 22222222223344455566666666654422 244555556677899999999999998763 1 12233344467777
Q ss_pred HHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-
Q 043758 458 FYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKA-G- 535 (918)
Q Consensus 458 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~- 535 (918)
+...+......++... . .+++...- +.-.|+..++...++..... +
T Consensus 423 ~~~~~~~~~~~~~~~l-------------------~-------~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~ 470 (987)
T PRK09782 423 LESHPYLATPAKVAIL-------------------S-------KPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGD 470 (987)
T ss_pred HHhCCcccchHHHHHh-------------------c-------cccccchh------HHHHhhhhhhhhhHHHHHHhccc
Confidence 7776653322222111 1 00010000 00111222222222211110 0
Q ss_pred CCC--cHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 043758 536 IDP--DEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLY 613 (918)
Q Consensus 536 ~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 613 (918)
.++ +...|..+..++.. +++++|+..+.+.... .|+......+..++...|++++|...|+.+... +|+...+
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~ 545 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDL 545 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHH
Confidence 022 33344444444333 4444455544444433 233222222223333455555555555544332 2222333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccch
Q 043758 614 TALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTK 693 (918)
Q Consensus 614 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (918)
..+..++.+.|++++|...++...+.. |+.......
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~------------------------------------------ 581 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWW------------------------------------------ 581 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHH------------------------------------------
Confidence 334444445555555555555544321 211110000
Q ss_pred hhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHh
Q 043758 694 STAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN-QVTFCILINGHIA 772 (918)
Q Consensus 694 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 772 (918)
+.......|++++|...+++..+. .|+...|..+..++.+.|++++|+..+++..+. .|+ ...++.+..++..
T Consensus 582 --La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~ 655 (987)
T PRK09782 582 --LHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWD 655 (987)
T ss_pred --HHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 001111225555555555544433 345677778888888888888888888888874 454 4466777778888
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChhhHH
Q 043758 773 AGEIDQAIGLFNQMNADGCVP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKK-ATYEHLLECFCANCLSIPAF 850 (918)
Q Consensus 773 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~ 850 (918)
.|+.++|++.+++..+. .| +...+..+..++...|++++|+..+++..+ ..|+. .+.........+..+++.|.
T Consensus 656 ~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 656 SGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHH
Confidence 88888888888888874 33 567788888888888888888888888875 45654 34445555566777788888
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCCH
Q 043758 851 NMFKEMIVHDHVPCLSNCNWLLNILCQEKHF 881 (918)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 881 (918)
+.+++.... .|+..+....+.++...+++
T Consensus 732 ~~~~r~~~~--~~~~~a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 732 EEVGRRWTF--SFDSSIGLRSGAMSTANNNV 760 (987)
T ss_pred HHHHHHhhc--CccchhccccchHhhhcccc
Confidence 888877665 34444666666666655543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-18 Score=183.10 Aligned_cols=728 Identities=14% Similarity=0.082 Sum_probs=451.5
Q ss_pred HHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCC----CCCC--h-hhHHHHHHHhhchh----------
Q 043758 49 SALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKN----IVPI--K-LACVSILRGLFAEE---------- 111 (918)
Q Consensus 49 ~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~--~-~~~~~l~~~~~~~g---------- 111 (918)
+.++.+|...+...+++..+..-+.+.|+.++.+.+++...... ..+. . .+++.+...+...+
T Consensus 28 ~ev~~IL~~e~a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~ 107 (1018)
T KOG2002|consen 28 TEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKD 107 (1018)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 45667777777777777777777788888888888888776211 1111 1 12223333332222
Q ss_pred -cHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCC--hhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHH
Q 043758 112 -KFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGF--LDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAE 188 (918)
Q Consensus 112 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 188 (918)
.+..|..+|..+.......+.. +..-...|...|+ ++.|.+.|....+ .-+++...+..-.......+++-.|.
T Consensus 108 e~~~~at~~~~~A~ki~m~~~~~-l~~~~~~~l~~~~~~~~~A~a~F~~Vl~--~sp~Nil~LlGkA~i~ynkkdY~~al 184 (1018)
T KOG2002|consen 108 ELFDKATLLFDLADKIDMYEDSH-LLVQRGFLLLEGDKSMDDADAQFHFVLK--QSPDNILALLGKARIAYNKKDYRGAL 184 (1018)
T ss_pred HHHHHHHHHhhHHHHhhccCcch-hhhhhhhhhhcCCccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHhccccHHHHH
Confidence 3455666666655444322222 2222222333443 5888888888886 23455555544445555678999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHH---hcCChhHHHHHHHHH
Q 043758 189 SFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDS-YTCNTLIHGFF---KMGLFDKGWVLYSQM 264 (918)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~---~~g~~~~a~~~~~~~ 264 (918)
.+|.......+.-.+...-.+...+.+.|+.+.|+..|.+..+. .|+. .++..|...-. ....+..+..++...
T Consensus 185 ~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~a 262 (1018)
T KOG2002|consen 185 KYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRA 262 (1018)
T ss_pred HHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 99999666533322222333345566889999999999999886 3432 23333322212 223455666777766
Q ss_pred HhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 043758 265 SDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLA--PSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPD 342 (918)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 342 (918)
...+ +.++...+.|...|.-.|++..++.+...+...... .-..+|..+.++|-..|++++|...|-+..+. .+|
T Consensus 263 y~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d 339 (1018)
T KOG2002|consen 263 YKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DND 339 (1018)
T ss_pred Hhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCC
Confidence 6554 567888888999999999999999998887764311 12345778889999999999999998776653 444
Q ss_pred hhh--HHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHH
Q 043758 343 HLL--SFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYI 420 (918)
Q Consensus 343 ~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 420 (918)
..+ +..+...+...|+++.+...++.+.+...... .+...+.
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~------------------------------------etm~iLG 383 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY------------------------------------ETMKILG 383 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchH------------------------------------HHHHHHH
Confidence 433 33345556666666666655555555432221 3334444
Q ss_pred HHHHccC----ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHH
Q 043758 421 SALCKGG----KYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQM 496 (918)
Q Consensus 421 ~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 496 (918)
..|...+ ..+.|..++....+.- +.|...|..+...+-.. +...+... +..|..+ +
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~---------------~~~A~d~---L 443 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDA---------------YGNALDI---L 443 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHH---------------HHHHHHH---H
Confidence 4444443 4566666666665442 34445555554444332 21111221 1222222 3
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCcH------HHHHHHHHHHHcCCChHHHHHHHHHHH
Q 043758 497 EVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKA---GIDPDE------VFFTTMINGYLQNRKPIEACQLFEKMK 567 (918)
Q Consensus 497 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~ 567 (918)
...+..+.+...|.+...+...|+++.|...|...... ...++. .+-..+....-..++++.|.+.|..+.
T Consensus 444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il 523 (1018)
T KOG2002|consen 444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL 523 (1018)
T ss_pred HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34455578889999999999999999999999988764 112222 222334445556789999999999999
Q ss_pred hCCCCCCch-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CccH
Q 043758 568 ENSVQPGSY-PYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQI-EFDL 645 (918)
Q Consensus 568 ~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~ 645 (918)
+. .|+-. .|..+.-.....+...+|...++.....+ ..++..+..+...+.+...+..|.+-|....+... .+|.
T Consensus 524 ke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~ 600 (1018)
T KOG2002|consen 524 KE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDA 600 (1018)
T ss_pred HH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCch
Confidence 87 35432 23333322223577889999999988764 55777888888899999999999998887766543 3566
Q ss_pred HHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCCh
Q 043758 646 IAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNL 725 (918)
Q Consensus 646 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 725 (918)
++..+|-+.|......... ..--..+..++|.++++++.... +-|.
T Consensus 601 YsliaLGN~~~~~l~~~~r---------------------------------n~ek~kk~~~KAlq~y~kvL~~d-pkN~ 646 (1018)
T KOG2002|consen 601 YSLIALGNVYIQALHNPSR---------------------------------NPEKEKKHQEKALQLYGKVLRND-PKNM 646 (1018)
T ss_pred hHHHHhhHHHHHHhccccc---------------------------------ChHHHHHHHHHHHHHHHHHHhcC-cchh
Confidence 6666666533332111000 00122366778888888777333 5577
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNAD-GCVPDKTVYNTLLKG 804 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~ 804 (918)
.+-|-+.-+++..|++.+|..+|.+..+... .+..+|-.+..+|...|++..|+++|+...+. .-+-+..+...|..+
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 7888888888888999999999988887643 23346777888888889999999988887776 545577888888888
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH
Q 043758 805 LCQAGRLSHVFSVFYSMHKRGFVPKKAT--YEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFH 882 (918)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 882 (918)
+.+.|.+.+|.+.+..... ..|...+ ++..+.. .++-+..++. ++ .++=.+....+..+
T Consensus 726 ~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a~v~----------kkla~s~lr~--~k-----~t~eev~~a~~~le 786 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKARH--LAPSNTSVKFNLALVL----------KKLAESILRL--EK-----RTLEEVLEAVKELE 786 (1018)
T ss_pred HHHhhhHHHHHHHHHHHHH--hCCccchHHhHHHHHH----------HHHHHHHHhc--cc-----ccHHHHHHHHHHHH
Confidence 8888888888888777664 3443332 2222211 1111222221 11 12334445556678
Q ss_pred HHHHHHHHHHhCCCC
Q 043758 883 EAQIVLDVMHKRGRL 897 (918)
Q Consensus 883 ~A~~~~~~~~~~~~~ 897 (918)
.|.+++..|...+-.
T Consensus 787 ~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 787 EARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHhcCCC
Confidence 888888888877644
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-18 Score=182.40 Aligned_cols=442 Identities=12% Similarity=0.087 Sum_probs=260.6
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCC----CCcc---hhHHHHHHHHHcCC-----------ChhHHHHHHHHH
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNAGV----DLNC---WSYNVLIDGLCYKG-----------FLDEVLEVVNIM 158 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~g-----------~~~~A~~~~~~~ 158 (918)
..+|..+...|..+|+.++.+.+++.-..... .++. ..++.+..-++..+ ....|.-.|+..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 34899999999999999999999987651110 1111 12333333332211 223344455554
Q ss_pred HhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc--CCCC
Q 043758 159 RKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT--GCEP 236 (918)
Q Consensus 159 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p 236 (918)
-+..-..+...+............+++.|.+.|....+..+. +....-.-.......|++..|+.+|+..... ..+|
T Consensus 121 ~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~a 199 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKA 199 (1018)
T ss_pred HHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCC
Confidence 431112222222222222222222358888899888887443 4444444444555678999999999997654 2344
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCcchHHH
Q 043758 237 DSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREG---EVDAALMLLNSKVSSNLAPSVHCYTV 313 (918)
Q Consensus 237 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ 313 (918)
|+. ..+..++.+.|+.+.|...|....+.+ +-++.++..|...-.... .+..+..++...-..+ +-|+.+.+.
T Consensus 200 D~r--Igig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~ 275 (1018)
T KOG2002|consen 200 DVR--IGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNH 275 (1018)
T ss_pred Ccc--chhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHH
Confidence 443 233355678899999999999988764 223334444433333333 3566777777766655 467788888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCCh
Q 043758 314 LIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDL 393 (918)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (918)
|...|.-.|+++.+..+...+......-..
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~-------------------------------------------------- 305 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSI-------------------------------------------------- 305 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHH--------------------------------------------------
Confidence 999999999999999988887653210000
Q ss_pred HHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHH--HHHHHHhcCChhhHHHHH
Q 043758 394 CQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNT--LIKCFYQVGFLEGANAIV 471 (918)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--li~~~~~~~~~~~a~~~~ 471 (918)
-..+|-.+..+|...|++++|...|.+.... .++.+++.. +...+
T Consensus 306 ------------------~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~------------- 352 (1018)
T KOG2002|consen 306 ------------------KAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMY------------- 352 (1018)
T ss_pred ------------------HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHH-------------
Confidence 0134556677778888888888887776654 344433322 23333
Q ss_pred HHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 043758 472 ELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEK----RILEAEDMFKRMLKAGIDPDEVFFTTMI 547 (918)
Q Consensus 472 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 547 (918)
.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+.
T Consensus 353 ---------i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~la 421 (1018)
T KOG2002|consen 353 ---------IKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELA 421 (1018)
T ss_pred ---------HHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHH
Confidence 34456666666777776653 335666666666666654 4566666666666542 34555665555
Q ss_pred HHHHcCCChHHHHHHHHHHH----hCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCH------HHHH
Q 043758 548 NGYLQNRKPIEACQLFEKMK----ENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLAD---GFVPNV------VLYT 614 (918)
Q Consensus 548 ~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~ 614 (918)
..+-.. ++..++..|..+. ..+-.+.....|.+.......|+++.|...|...... ...++. .+--
T Consensus 422 ql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 422 QLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 555443 3333365555543 3343456667777777777788888887777776554 111222 1222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 043758 615 ALINHFLRAGEFEFASRLENLMVT 638 (918)
Q Consensus 615 ~l~~~~~~~g~~~~a~~~~~~~~~ 638 (918)
.+..++...++.+.|.+.|..+++
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHH
Confidence 355556666777888888877775
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-20 Score=182.77 Aligned_cols=354 Identities=15% Similarity=0.115 Sum_probs=246.3
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDIL 493 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 493 (918)
.+|..+..++...|+.+.|...|.+.+.. .|+.....+-+..+.+ ..|++++|...+
T Consensus 151 da~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlk---------------------a~Grl~ea~~cY 207 (966)
T KOG4626|consen 151 DAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLK---------------------AEGRLEEAKACY 207 (966)
T ss_pred HHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHH---------------------hhcccchhHHHH
Confidence 44555566666666666666666666543 3443333332222211 235566666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 043758 494 DQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQP 573 (918)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 573 (918)
.+.++..+. -..+|+.|...+...|+...|+..|++..+.. +.-...|-.+...|...+.+++|+..|.+.... .|
T Consensus 208 lkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 208 LKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 666654322 44567777777788888888888888887753 223566777888888888888888888777765 34
Q ss_pred C-chhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 043758 574 G-SYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALV 652 (918)
Q Consensus 574 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 652 (918)
+ ...+..+.-.|..+|.++.|+..|++.++.. +--+..|+.|..++-..|+..+|...|.+.+...
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~------------ 350 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC------------ 350 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC------------
Confidence 4 3556666666777888888888888887752 2235678888888888888888888877775310
Q ss_pred HHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 043758 653 SGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIF 732 (918)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 732 (918)
+......+.|.
T Consensus 351 ---------------------------------------------------------------------p~hadam~NLg 361 (966)
T KOG4626|consen 351 ---------------------------------------------------------------------PNHADAMNNLG 361 (966)
T ss_pred ---------------------------------------------------------------------CccHHHHHHHH
Confidence 22345667778
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCC
Q 043758 733 LLLCGVGRMDDAYDHFQMMKREGLRPNQV-TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDK-TVYNTLLKGLCQAGR 810 (918)
Q Consensus 733 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 810 (918)
..|...|.+++|..+|....+ +.|... .++.|...|-.+|++++|+..|++.++ ++|+. ..|+.+...|...|+
T Consensus 362 ni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhh
Confidence 888888888888888888777 556543 677788888888888888888888877 67764 778888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 043758 811 LSHVFSVFYSMHKRGFVPKKA-TYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHE 883 (918)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 883 (918)
.+.|+..+.+... +.|... ..+.|...|--.|+..+|+..+++.++.. |.-+.++..++.++.-.-+|.+
T Consensus 438 v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHHHHHhcccc
Confidence 8888888888874 567554 66778888888888888888888888765 4446677777766554444433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-19 Score=179.98 Aligned_cols=460 Identities=15% Similarity=0.110 Sum_probs=305.4
Q ss_pred HHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCC
Q 043758 49 SALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGV 128 (918)
Q Consensus 49 ~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 128 (918)
+.+++-+.+....+.+..-+..-+.+.|++.+|.+.-...-..++. +....-.+-..+.+..+.+.....-....+..
T Consensus 35 ~~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~- 112 (966)
T KOG4626|consen 35 SSVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN- 112 (966)
T ss_pred hHHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-
Confidence 3444444444444444444444446778888888777766655532 22222233344555555655544433344333
Q ss_pred CCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCC-CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhh-H
Q 043758 129 DLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVP-ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLM-Y 206 (918)
Q Consensus 129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~ 206 (918)
+.-..+|..+...+...|++.+|+..++.+++ ..| ....|..+..++...|+.+.|.+.|.+..+.+ |+... .
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aie---l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~ 187 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIE---LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCAR 187 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHh---cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhh
Confidence 33456777888888888888888888888876 334 46677778888888888888888887777752 23332 2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHh
Q 043758 207 TSLINGYCSNRNMKMAMRLFFRMLKTGCEPD-SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCR 285 (918)
Q Consensus 207 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (918)
+-+....-..|+.++|...|.+..+. .|. ...|+.|.-.+-..|+...|++.|++.++.. +.-...|..|...|..
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKE 264 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHH
Confidence 23334444577788888888777765 343 3467777777777888888888888877653 2235567777778888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHH
Q 043758 286 EGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALML 365 (918)
Q Consensus 286 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 365 (918)
.+.++.|...+.+..... +....++..+...|..+|..+-|++.|++.++. .|+-
T Consensus 265 ~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F---------------------- 319 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNF---------------------- 319 (966)
T ss_pred HhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCc----------------------
Confidence 888888888887776654 345566777777777888888888888777653 2221
Q ss_pred HHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCC
Q 043758 366 LCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYR 445 (918)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (918)
+.+|+.+..++...|+..+|...|.+.+... +
T Consensus 320 -----------------------------------------------~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p 351 (966)
T KOG4626|consen 320 -----------------------------------------------PDAYNNLANALKDKGSVTEAVDCYNKALRLC-P 351 (966)
T ss_pred -----------------------------------------------hHHHhHHHHHHHhccchHHHHHHHHHHHHhC-C
Confidence 2667888888888888888888888877653 2
Q ss_pred CCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043758 446 PLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAE 525 (918)
Q Consensus 446 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 525 (918)
.-..+.+.+...+...| .+++|..++....+..+. -....+.|...|-..|++++|+
T Consensus 352 ~hadam~NLgni~~E~~----------------------~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQG----------------------KIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred ccHHHHHHHHHHHHHhc----------------------cchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHH
Confidence 22345566666665444 445555555555554222 3456778888888889999999
Q ss_pred HHHHHHHHCCCCCc-HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-chhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 526 DMFKRMLKAGIDPD-EVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPG-SYPYTALISGLVKKGMVDLGCMYLDRMLA 603 (918)
Q Consensus 526 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 603 (918)
.-|++..+. .|+ ...|+.+...|-..|+...|++.+.+.+..+ |. ...++.|...|-..|++.+|+.-|+...+
T Consensus 409 ~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 409 MCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 999888875 454 5678888888888899999999888888763 33 35677788888889999999998888887
Q ss_pred CCCCCC-HHHHHHHHHHH
Q 043758 604 DGFVPN-VVLYTALINHF 620 (918)
Q Consensus 604 ~~~~~~-~~~~~~l~~~~ 620 (918)
. .|| +..|-.++.++
T Consensus 485 l--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 485 L--KPDFPDAYCNLLHCL 500 (966)
T ss_pred c--CCCCchhhhHHHHHH
Confidence 6 333 33444455544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-16 Score=166.10 Aligned_cols=297 Identities=13% Similarity=0.031 Sum_probs=214.5
Q ss_pred hhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHH
Q 043758 3 LINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDAL 82 (918)
Q Consensus 3 ~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~ 82 (918)
++.+|++++|.+++..++++.|. .+.+|.+|..++ -.+|+.+++.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~------------------~~~ay~tL~~Iy-----------------EqrGd~eK~l 193 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPR------------------NPIAYYTLGEIY-----------------EQRGDIEKAL 193 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCcc------------------chhhHHHHHHHH-----------------HHcccHHHHH
Confidence 34556677777777777666665 444555566655 5556666666
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcC
Q 043758 83 RHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKK 162 (918)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 162 (918)
..+--+...++. |...|..+.....+.|++++|.-.|.+++... |++...+..-+..|.+.|+...|.+.|.++.. .
T Consensus 194 ~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~-~ 270 (895)
T KOG2076|consen 194 NFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQ-L 270 (895)
T ss_pred HHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHh-h
Confidence 666666666655 66789999888899999999999999999887 67777788888899999999999999999987 2
Q ss_pred CCCCCcccHHHH----HHHHhccCchHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC--
Q 043758 163 GLVPALHPYKSL----FYALCKNIRTVEAESFAREMESQG-FYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCE-- 235 (918)
Q Consensus 163 ~~~~~~~~~~~l----l~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-- 235 (918)
..+.+..-...+ +..+...++-+.|.+.++...+.+ -..+...++.++..|.+...++.|......+......
T Consensus 271 ~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d 350 (895)
T KOG2076|consen 271 DPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKD 350 (895)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCC
Confidence 212222222223 344556666788888888877732 1235667889999999999999999888877651111
Q ss_pred --------------------CChhhHH----HHHHHHHhcCChhHHHHHHHHHHhCCC--CccHhhHHHHHHHHHhcCCH
Q 043758 236 --------------------PDSYTCN----TLIHGFFKMGLFDKGWVLYSQMSDWGF--QPNMVTDLIMISNYCREGEV 289 (918)
Q Consensus 236 --------------------p~~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 289 (918)
|+...|. .+.-++.+....+....+...+....+ ..++..|.-+..+|...|++
T Consensus 351 ~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~ 430 (895)
T KOG2076|consen 351 DSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY 430 (895)
T ss_pred hhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH
Confidence 1111111 233345566666666666666666653 34466788899999999999
Q ss_pred HHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 290 DAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 290 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
..|..+|..+.......+...|-.+..+|...|.+++|.+.|...+..
T Consensus 431 ~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 431 KEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999988765567789999999999999999999999998763
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=186.40 Aligned_cols=236 Identities=14% Similarity=0.087 Sum_probs=102.4
Q ss_pred HHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC----cccHHHHH
Q 043758 100 CVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA----LHPYKSLF 175 (918)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ll 175 (918)
+..++..|...|++++|+.+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+ .+..+. ...+..+.
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEK-LGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHH
Confidence 3444444444555555555555444332 23334444444455555555555555554443 111110 01122333
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFD 255 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 255 (918)
..+.+.|++++|...|+++.+..+. +...+..+...|.+.|++++|.+.|+++.+.+......+++.+..++...|+++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 3444445555555555554443211 233444444444455555555555555443311111223444444444555555
Q ss_pred HHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh---cCChhHHHHHHH
Q 043758 256 KGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK---HNRLMEVDELYK 332 (918)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~ 332 (918)
+|...++.+.+. .|+...+..++..+.+.|++++|..+++.+.+. .|+...++.++..+.. .|+..++..+++
T Consensus 267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 555555544443 233333344444444555555555555444433 2444444444444332 234444555555
Q ss_pred HHHhCCCCCC
Q 043758 333 KMLANRVAPD 342 (918)
Q Consensus 333 ~~~~~~~~~~ 342 (918)
+|.+.++.|+
T Consensus 343 ~~~~~~~~~~ 352 (389)
T PRK11788 343 DLVGEQLKRK 352 (389)
T ss_pred HHHHHHHhCC
Confidence 4444444333
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-18 Score=179.33 Aligned_cols=306 Identities=13% Similarity=0.085 Sum_probs=185.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC---chhHHHHHHHHHhc
Q 043758 512 IGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPG---SYPYTALISGLVKK 588 (918)
Q Consensus 512 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 588 (918)
...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 345677899999999999999874 44566888889999999999999999999987532221 24567788889999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccc
Q 043758 589 GMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDV 668 (918)
Q Consensus 589 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 668 (918)
|+++.|..+|+.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 99999999999998753 45678899999999999999999999999876432221100
Q ss_pred cccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 043758 669 NRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHF 748 (918)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 748 (918)
....+..+...+.+.|++++|...|
T Consensus 179 -------------------------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 179 -------------------------------------------------------IAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 0112233444444555555555555
Q ss_pred HHHHHcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 043758 749 QMMKREGLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFV 827 (918)
Q Consensus 749 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 827 (918)
+++.+. .|+ ...+..+...+.+.|++++|.+.|+++.+.+......+++.++.+|...|++++|...++++.+. .
T Consensus 204 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 204 KKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 555442 122 22444444555555555555555555554311111234445555555555555555555555432 3
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCcc
Q 043758 828 PKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQ---EKHFHEAQIVLDVMHKRGRLPCTS 901 (918)
Q Consensus 828 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 901 (918)
|+...+..+...+.+.|++++|...++++.+. .|+...+..+...+.. .|+..+|..++++|.++++.|++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 44444444455555555555555555555443 2333344433433332 335555555555555555544444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-13 Score=139.04 Aligned_cols=615 Identities=11% Similarity=0.031 Sum_probs=409.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHH
Q 043758 74 ALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLE 153 (918)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 153 (918)
..+++..|.-++....+.+|. ++..|.+-.+.--..|++..|..+..+=.+.- +.+...|-. ++ +....+.|..
T Consensus 263 dl~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLe---ai-RLhp~d~aK~ 336 (913)
T KOG0495|consen 263 DLEDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLE---AI-RLHPPDVAKT 336 (913)
T ss_pred cHHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHH---HH-hcCChHHHHH
Confidence 344567788888888887765 66677777776677777777776665433331 233333332 22 3445555666
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 043758 154 VVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTG 233 (918)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 233 (918)
+.-...+ ..+.++..|..-. --..+...=.+++....+. ++.++..|-..+ ...+.+.|.-++.+..+.
T Consensus 337 vvA~Avr--~~P~Sv~lW~kA~---dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAvec- 405 (913)
T KOG0495|consen 337 VVANAVR--FLPTSVRLWLKAA---DLESDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVEC- 405 (913)
T ss_pred HHHHHHH--hCCCChhhhhhHH---hhhhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHh-
Confidence 6666554 1222223322111 1112333345566666665 222555555443 344556677777777764
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHh----hCCCCCCcc
Q 043758 234 CEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKV----SSNLAPSVH 309 (918)
Q Consensus 234 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ 309 (918)
-|... -|..++++..-++.|..++....+. ++-+...|.+-...--..|+.+...+++.+-. ..|+..+..
T Consensus 406 -cp~s~---dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rd 480 (913)
T KOG0495|consen 406 -CPQSM---DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRD 480 (913)
T ss_pred -ccchH---HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHH
Confidence 23321 1233455566677777777777654 45566666666666666677776666665432 233334444
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCC
Q 043758 310 CYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNP 389 (918)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (918)
.|-.=...+-..|-.-.+..+....+.-|+. ...
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvE-----------------------------------eed----------- 514 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVE-----------------------------------EED----------- 514 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccc-----------------------------------cch-----------
Confidence 4433333333333333333333333222221 110
Q ss_pred CCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHH
Q 043758 390 TGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANA 469 (918)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 469 (918)
-..+|..-...|.+.+.++-|..+|...+.-- +.+...|......--
T Consensus 515 ----------------------~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek---------- 561 (913)
T KOG0495|consen 515 ----------------------RKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEK---------- 561 (913)
T ss_pred ----------------------hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHH----------
Confidence 01567888888889999999999998887642 334445544443322
Q ss_pred HHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 043758 470 IVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMING 549 (918)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (918)
..|..+.-..+|.+....-+ .....|-....-+-..|+...|..++..+.+.. +.+...|-..+..
T Consensus 562 ------------~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKl 627 (913)
T KOG0495|consen 562 ------------SHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKL 627 (913)
T ss_pred ------------hcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 23566777778888887633 366677777777888899999999999998875 4467788888888
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043758 550 YLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFA 629 (918)
Q Consensus 550 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 629 (918)
-..+..++.|..+|.+.... .|+...|.--+...--.++.++|++++++.++. ++.-...|..+.+.+-+.++.+.|
T Consensus 628 e~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred hhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHH
Confidence 89999999999999998865 577778877777667788999999999988875 344456777777788888888888
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHH
Q 043758 630 SRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTV 709 (918)
Q Consensus 630 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a 709 (918)
...|..-.+
T Consensus 705 R~aY~~G~k----------------------------------------------------------------------- 713 (913)
T KOG0495|consen 705 REAYLQGTK----------------------------------------------------------------------- 713 (913)
T ss_pred HHHHHhccc-----------------------------------------------------------------------
Confidence 777665431
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 710 QKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNAD 789 (918)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 789 (918)
.++..+..|-++...--+.|.+-.|..++++..-.+ +-|...|...|..-.+.|+.+.|..+..++++.
T Consensus 714 ----------~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 714 ----------KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred ----------cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223356778888888888889999999999887654 335668888899999999999999998888876
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHH
Q 043758 790 GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCN 869 (918)
Q Consensus 790 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 869 (918)
++-+...|..-|....+.++-......+++ ...|++.+-.+...|.....+++|.+.|.+....+ |.+..+|.
T Consensus 783 -cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa 855 (913)
T KOG0495|consen 783 -CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWA 855 (913)
T ss_pred -CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHH
Confidence 555778888888888777776555555554 35677777788888888899999999999999887 77788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 870 WLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 870 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.+-..+...|.-++-.+++.+.....
T Consensus 856 ~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 856 WFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 88899999999888888888776554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-16 Score=177.34 Aligned_cols=253 Identities=13% Similarity=0.033 Sum_probs=154.9
Q ss_pred CChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHH
Q 043758 484 GNLDSALDILDQMEVRG--PKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQ 561 (918)
Q Consensus 484 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 561 (918)
+++++|...|+...+.+ .+.....++.+...+...|++++|+..|++..+.. +.+...|..+...+...|++++|+.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 35566666666666543 12234456666666777777777777777776652 2234566666666777777777777
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043758 562 LFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQI 641 (918)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 641 (918)
.|+++.+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++.++.
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 462 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-- 462 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 777776653 2344566666666777777777777777776653 334555666666666777777777666665421
Q ss_pred CccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCC
Q 043758 642 EFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEF 721 (918)
Q Consensus 642 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 721 (918)
.
T Consensus 463 -------------------------------------------------------------------------------~ 463 (615)
T TIGR00990 463 -------------------------------------------------------------------------------F 463 (615)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH--H------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043758 722 MPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQ--V------TFCILINGHIAAGEIDQAIGLFNQMNADGCVP 793 (918)
Q Consensus 722 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 793 (918)
+.++..++.+...+...|++++|+..|++.... .|+. . .++..+..+...|++++|.+++++.+.... .
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~ 540 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-E 540 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-C
Confidence 234556666677777777777777777777663 2221 1 111111222335777777777777666421 1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 794 DKTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 794 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
+...+..+..++...|++++|+..+++..+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 334566777777777777777777777664
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-17 Score=181.09 Aligned_cols=267 Identities=11% Similarity=0.088 Sum_probs=153.6
Q ss_pred hhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHH
Q 043758 62 QSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDG 141 (918)
Q Consensus 62 ~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 141 (918)
.+++..+..+....|++++|...|+++.+.+|. ++.++..+...+...|++++|+..|+++.... +.+...+..++..
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~ 153 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRT 153 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 333333333334566666666666666665543 45566666666666667777776666666553 3445566666666
Q ss_pred HHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHH
Q 043758 142 LCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKM 221 (918)
Q Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 221 (918)
+...|+.++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++
T Consensus 154 l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~e 230 (656)
T PRK15174 154 LVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQE 230 (656)
T ss_pred HHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHH
Confidence 666667666666666655411 1112222222 2355566666666666666555333333344444556666666666
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 043758 222 AMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDK----GWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLN 297 (918)
Q Consensus 222 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 297 (918)
|+..|+++.+.. +.+...+..+...+...|++++ |...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 231 A~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 231 AIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666542 2233455556666666666664 566666666553 3345566666666666666666666666
Q ss_pred HHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 298 SKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 298 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
+..... +.+...+..+..++.+.|++++|...|+++..
T Consensus 309 ~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 309 QSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666554 23344555566666666666666666666654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-16 Score=175.33 Aligned_cols=427 Identities=13% Similarity=0.019 Sum_probs=231.1
Q ss_pred hhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCC
Q 043758 68 YQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGF 147 (918)
Q Consensus 68 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 147 (918)
.+..+.+.|+++.|+..|+.+++.. |++..|..+..+|.+.|++++|+..++.+++.. +.+...|..+..++...|+
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 3455689999999999999998866 567789999999999999999999999999876 5567789999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 043758 148 LDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFF 227 (918)
Q Consensus 148 ~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 227 (918)
+++|+.-|..+....+.. ......++.-+.. ..+........+.... +...+..+.. |...........-+.
T Consensus 210 ~~eA~~~~~~~~~~~~~~--~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 210 YADALLDLTASCIIDGFR--NEQSAQAVERLLK----KFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred HHHHHHHHHHHHHhCCCc--cHHHHHHHHHHHH----HHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhhh
Confidence 999999888776521111 1111111111111 1222222333222111 2222222222 211111111111111
Q ss_pred HHHhcCCCCCh-hhHHHHHHH---HHhcCChhHHHHHHHHHHhCC-C-CccHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043758 228 RMLKTGCEPDS-YTCNTLIHG---FFKMGLFDKGWVLYSQMSDWG-F-QPNMVTDLIMISNYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 228 ~m~~~~~~p~~-~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 301 (918)
...+. .++. ..+..+... ....+++++|.+.|+...+.+ . +.....+..+...+...|++++|...|+....
T Consensus 282 ~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 282 DSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred ccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11110 1110 011111100 012345556666666655543 1 12233455555555566666666666666555
Q ss_pred CCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhh
Q 043758 302 SNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLAR 381 (918)
Q Consensus 302 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 381 (918)
.. +.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++.|...+....+..
T Consensus 360 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-------- 429 (615)
T TIGR00990 360 LD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-------- 429 (615)
T ss_pred cC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------
Confidence 43 2233455555555666666666666666555432 1122233333333444444444444443333322
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 043758 382 SISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQV 461 (918)
Q Consensus 382 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 461 (918)
|. +...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...
T Consensus 430 ---------------------------P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 430 ---------------------------PD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQ 480 (615)
T ss_pred ---------------------------cc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 11 12445667778888899999999998887642 33445566666666555
Q ss_pred CChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043758 462 GFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVA------IYDAIIGHLCKEKRILEAEDMFKRMLKAG 535 (918)
Q Consensus 462 ~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 535 (918)
| ++++|...|++..+..+..+.. .++.....+...|++++|.+++++..+..
T Consensus 481 g----------------------~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 481 N----------------------KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred c----------------------CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4 5555666666655543221111 11222222333567777777777766543
Q ss_pred CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 043758 536 IDPDEVFFTTMINGYLQNRKPIEACQLFEKMKEN 569 (918)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 569 (918)
+.+...+..+...+...|++++|++.|++..+.
T Consensus 539 -p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 539 -PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred -CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 233445666666677777777777777666543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-14 Score=148.82 Aligned_cols=664 Identities=13% Similarity=0.071 Sum_probs=388.8
Q ss_pred HcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHH
Q 043758 143 CYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMA 222 (918)
Q Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 222 (918)
...|+.++|.+++.++++ ..+.+...|..|...|-+.|+.+++...+--....++. |...|..+.....+.|+++.|
T Consensus 150 farg~~eeA~~i~~EvIk--qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIK--QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHhCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHH
Confidence 345888888888888876 34556677888888888888888888777666665554 677888888888888888888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHh----hHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 223 MRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMV----TDLIMISNYCREGEVDAALMLLNS 298 (918)
Q Consensus 223 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 298 (918)
.-+|.+.++.. +++...+---...|-+.|+...|...|.++.....+.|.. .--..++.|...++.+.|.+.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888888763 3343444444556778888888888888887764222221 222345666777777888888877
Q ss_pred HhhC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCC
Q 043758 299 KVSS-NLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGID 377 (918)
Q Consensus 299 ~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 377 (918)
.... +-..+...++.++..+.....++.|......+......+|..-+.+-- ....-.......+...+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~----------~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE----------RRREEPNALCEVGKELS 375 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh----------hccccccccccCCCCCC
Confidence 6652 123455667888888888888888888887776644444433221000 00000000011111111
Q ss_pred hhh---hHHHhhcCCCCChHHHHHHHHHHHHhcC--CCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHH
Q 043758 378 PLA---RSISATLNPTGDLCQEIELLLRKIVKSD--PKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCN 452 (918)
Q Consensus 378 ~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 452 (918)
... .....+..... .+...-++......+ +.-....|..+..++...|++.+|+.+|..+.......+...|.
T Consensus 376 ~~l~v~rl~icL~~L~~--~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKE--RELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred ccchhHhHhhhhhcccc--cchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 111 11111222111 122333333344444 44445778899999999999999999999999875455566888
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 453 TLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRML 532 (918)
Q Consensus 453 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 532 (918)
.+..++...| ..+.|...++.++...+. +..+--.|...+.+.|+.++|.+.++.+.
T Consensus 454 ~~a~c~~~l~----------------------e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 454 KLARCYMELG----------------------EYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHh----------------------hHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 8888877665 455556666666655332 55566667777788888888888888754
Q ss_pred H--------CCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhC-----C-----------------CCCCchhHHHHH
Q 043758 533 K--------AGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKEN-----S-----------------VQPGSYPYTALI 582 (918)
Q Consensus 533 ~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-----------------~~~~~~~~~~l~ 582 (918)
. .+..|+........+.+...|+.++=+.+...|+.. - .+-...+...++
T Consensus 511 ~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~ 590 (895)
T KOG2076|consen 511 NPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQII 590 (895)
T ss_pred CCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHH
Confidence 2 123344444444555666777776654444444321 0 111222333334
Q ss_pred HHHHhcCChhHHHHHHH------HHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 043758 583 SGLVKKGMVDLGCMYLD------RMLADGFVPNV--VLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSG 654 (918)
Q Consensus 583 ~~~~~~g~~~~a~~~~~------~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 654 (918)
.+-.+.++......... .-...|...+. ..+.-++.++.+.+++++|..+...+.....--...--..-+.
T Consensus 591 ~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~- 669 (895)
T KOG2076|consen 591 RAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQ- 669 (895)
T ss_pred HHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHH-
Confidence 44444333222222111 11111222222 3456677788899999999999888876542111111000000
Q ss_pred HhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhc-CC---CCChhhHHH
Q 043758 655 VCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDI-EF---MPNLYLYND 730 (918)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~-~~---~~~~~~~~~ 730 (918)
.....+.+..+++..+...++.+... ++ +--...||.
T Consensus 670 ---------------------------------------~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~ 710 (895)
T KOG2076|consen 670 ---------------------------------------FLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNL 710 (895)
T ss_pred ---------------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 00111223347777777777766532 11 123467776
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-
Q 043758 731 IFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILING--HIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLL-KGLC- 806 (918)
Q Consensus 731 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~- 806 (918)
.++...+.++-.-=.+.+..... .+|+......+|.+ +...+.+..|+..+-.+... .||...++..+ .++.
T Consensus 711 ~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 711 DFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHH
Confidence 66666666554443444443332 22332222222222 35677888888877666553 45533333222 2221
Q ss_pred ---------HcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCC------------
Q 043758 807 ---------QAGRLSHVFSVFYSMHKRGFV-PKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPC------------ 864 (918)
Q Consensus 807 ---------~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------ 864 (918)
++-.+-++..++.+..+.... -....+-.+..+|-..|-..-|..++++.++.. |++
T Consensus 787 ~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~-p~~~~~~~~d~~dLr 865 (895)
T KOG2076|consen 787 LALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS-PKDVTDPKEDNYDLR 865 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC-ccccccccCCcccHH
Confidence 112355677777777653211 144566778889999999999999999998764 222
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 865 LSNCNWLLNILCQEKHFHEAQIVLDV 890 (918)
Q Consensus 865 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 890 (918)
..+-+.|.-+|.++|+...|.+++++
T Consensus 866 keAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 866 KEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 23345678899999999999999875
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-16 Score=178.01 Aligned_cols=266 Identities=11% Similarity=0.013 Sum_probs=216.6
Q ss_pred HHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 043758 64 ALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLC 143 (918)
Q Consensus 64 a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (918)
.+..|...+.+.|+.++|+.+++..+...+. +..++..++.++...|++++|+..|+++.... |.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3445555568889999999999999888765 45567777788888999999999999999886 567778888999999
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHH
Q 043758 144 YKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAM 223 (918)
Q Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 223 (918)
..|++++|+..++.+.+. .+.+...+..+..++...|++++|...++.+....+. +...+..+ ..+...|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHH
Confidence 999999999999999871 2344667788888999999999999999988776544 34444444 3478899999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHH----HHHHHHHH
Q 043758 224 RLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDA----ALMLLNSK 299 (918)
Q Consensus 224 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~ 299 (918)
..++.+.+....++...+..+..++...|++++|.+.++.+.... +.+...+..+...|...|++++ |...|+..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999998876433344455566778889999999999999999875 5567788889999999999985 89999999
Q ss_pred hhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 300 VSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 300 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
.+.. |.+...+..+...+...|++++|...+++....
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8875 456778899999999999999999999998764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.6e-13 Score=133.40 Aligned_cols=614 Identities=13% Similarity=0.040 Sum_probs=423.2
Q ss_pred hhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHH
Q 043758 7 GLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFD 86 (918)
Q Consensus 7 ~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~ 86 (918)
+.+..|+.+++++...+|..+.+--+...+.+....... +-+.+.+.|...++.++.+.-- .+.-..+.|..+..
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~-Ar~~I~~GCe~cprSeDvWLea----iRLhp~d~aK~vvA 339 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSV-ARNLIMKGCEECPRSEDVWLEA----IRLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHH-HHHHHHHHHhhCCchHHHHHHH----HhcCChHHHHHHHH
Confidence 456789999999999998887776666655555333332 3455566666666665543221 44455666777777
Q ss_pred HHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCC
Q 043758 87 RLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVP 166 (918)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 166 (918)
.+....|. ++..| +.+---..+...=..++++.++. +|.++..|- +.....+.+.|+-++.+..+ -++.
T Consensus 340 ~Avr~~P~-Sv~lW---~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWK----aAVelE~~~darilL~rAve--ccp~ 408 (913)
T KOG0495|consen 340 NAVRFLPT-SVRLW---LKAADLESDTKNKKRVLRKALEH-IPRSVRLWK----AAVELEEPEDARILLERAVE--CCPQ 408 (913)
T ss_pred HHHHhCCC-Chhhh---hhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHH----HHHhccChHHHHHHHHHHHH--hccc
Confidence 77766533 34344 22222223344445566666655 244544553 34455666778889988886 2333
Q ss_pred CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH----hcCCCCChhhHH
Q 043758 167 ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRML----KTGCEPDSYTCN 242 (918)
Q Consensus 167 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~ 242 (918)
+...| .+|++..-++.|..++...++. ++.+...|.+-...--.+|+.+....+..+-. ..|+..+...|.
T Consensus 409 s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 409 SMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 33444 4455667788999999998886 45588888888877788899888888877643 467788888888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcc--HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh
Q 043758 243 TLIHGFFKMGLFDKGWVLYSQMSDWGFQPN--MVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK 320 (918)
Q Consensus 243 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 320 (918)
.=...|-..|..-.+..+....+..|+... ..||+.-...|.+.+.++-|+.+|...++.. +.+...|......--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHh
Confidence 888888888888888888888888776543 4588888888999999999999998888754 4566677776666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHH
Q 043758 321 HNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELL 400 (918)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 400 (918)
.|..++...+|++....-.
T Consensus 563 hgt~Esl~Allqkav~~~p------------------------------------------------------------- 581 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQCP------------------------------------------------------------- 581 (913)
T ss_pred cCcHHHHHHHHHHHHHhCC-------------------------------------------------------------
Confidence 7778888888877765421
Q ss_pred HHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCc
Q 043758 401 LRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGN 480 (918)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 480 (918)
.....|......+-..|+...|..++.+..+.. +.+...|-..+......
T Consensus 582 ----------kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en------------------- 631 (913)
T KOG0495|consen 582 ----------KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFEN------------------- 631 (913)
T ss_pred ----------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhcc-------------------
Confidence 112456666777777888888888888887764 22444555555544433
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHcCCChHHH
Q 043758 481 CKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPD-EVFFTTMINGYLQNRKPIEA 559 (918)
Q Consensus 481 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A 559 (918)
..++.|..+|.+... ..|+..+|.--+...--.+..++|.+++++..+. -|+ ...|..+.+.+-+.++.+.|
T Consensus 632 ---~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 632 ---DELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred ---ccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHH
Confidence 456666666766655 3556667766666667778999999999998876 444 45677777888889999999
Q ss_pred HHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043758 560 CQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTN 639 (918)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 639 (918)
.+.|..-.+. ++-....|..|.+.=-+.|.+..|..++++..-.+ +.+...|-..+..-.+.|+.+.|..++.+.++.
T Consensus 705 R~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 705 REAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9888776654 23334556666666667889999999999988775 668889999999999999999998888777642
Q ss_pred CCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhc
Q 043758 640 QIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDI 719 (918)
Q Consensus 640 ~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 719 (918)
T Consensus 783 -------------------------------------------------------------------------------- 782 (913)
T KOG0495|consen 783 -------------------------------------------------------------------------------- 782 (913)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043758 720 EFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYN 799 (918)
Q Consensus 720 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 799 (918)
++.+...|..-|....+.++-......+++ ..-|......+...+-....+++|++-|...+..+. -...+|.
T Consensus 783 -cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa 855 (913)
T KOG0495|consen 783 -CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWA 855 (913)
T ss_pred -CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHH
Confidence 122334455555454444454444333333 234556666677777778889999999988887522 2458888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 043758 800 TLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKA 831 (918)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 831 (918)
.+...+.+.|.-++-.+++..+.. ..|...
T Consensus 856 ~fykfel~hG~eed~kev~~~c~~--~EP~hG 885 (913)
T KOG0495|consen 856 WFYKFELRHGTEEDQKEVLKKCET--AEPTHG 885 (913)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhc--cCCCCC
Confidence 888888899988888888888874 455544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.8e-15 Score=152.74 Aligned_cols=733 Identities=12% Similarity=0.028 Sum_probs=375.8
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCC
Q 043758 84 HFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKG 163 (918)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 163 (918)
.+..+...|+.|+.++|..++.-|+..|+.+.|- +|.-|.-...+.+...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3455667789999999999999999999999988 8888887787888889999999998888887665
Q ss_pred CCCCcccHHHHHHHHhccCchH---HHHHHHHHHHh----CCCCCChhhH---------------HHHHHHHhcCCChHH
Q 043758 164 LVPALHPYKSLFYALCKNIRTV---EAESFAREMES----QGFYVDKLMY---------------TSLINGYCSNRNMKM 221 (918)
Q Consensus 164 ~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~----~~~~~~~~~~---------------~~li~~~~~~g~~~~ 221 (918)
.|.+.+|..|+.+|.+.|+.. .+++.++.+.. .|+. ....| ..++......|-++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 578899999999999999864 45553433332 2322 11111 112233333445555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043758 222 AMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 222 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 301 (918)
+++++..+.-... + .++-.+++-+.... ....++.......--.|+..++..+++.-...|+.+.|..++.+|.+
T Consensus 158 llkll~~~Pvsa~--~-~p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAW--N-APFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHhhCCcccc--c-chHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 5555544432210 1 01112344444332 22333333332221168999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChh--
Q 043758 302 SNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPL-- 379 (918)
Q Consensus 302 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 379 (918)
.|++.+...|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+...+....+.. +...+..
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~sq~~hg~t 301 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GSQLAHGFT 301 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------ccchhhhhh
Confidence 9999999988888877 78888899999999999999999999887777666443222111 1111100
Q ss_pred hhHHHhhcCC--CCCh--HHHHHHHH---HHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCC--CCC-Ccc
Q 043758 380 ARSISATLNP--TGDL--CQEIELLL---RKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFG--YRP-LVF 449 (918)
Q Consensus 380 ~~~~~~~~~~--~~~~--~~~a~~~~---~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~-~~~ 449 (918)
.....+.... ..+. .+.+..+. .+..-.+......+|...+.. ..+|+-+....+-..+..-- ..+ ++.
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 0000000000 0000 00111111 111111111111223222221 11333333333322222110 000 111
Q ss_pred cHHHHHHHHHh----------------------cCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHH----cCCC-
Q 043758 450 TCNTLIKCFYQ----------------------VGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEV----RGPK- 502 (918)
Q Consensus 450 ~~~~li~~~~~----------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~- 502 (918)
.+..++.-|.+ ..+.....++...... ..+.+.+..... +-..
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrk----------ns~lr~lv~Lss~Eler~he~ 450 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRK----------NSFLRQLVGLSSTELERSHEP 450 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCc----------chHHHHHhhhhHHHHhccccc
Confidence 11111111111 1111111111111111 111111111100 0000
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhC--CCCCC
Q 043758 503 ------PSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKEN--SVQPG 574 (918)
Q Consensus 503 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~ 574 (918)
+=...-+.++..++..-+..+++..-+.....- -+-.|..+|+-++.....+.|..+.++.... .+..+
T Consensus 451 ~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld 527 (1088)
T KOG4318|consen 451 WPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLD 527 (1088)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcc
Confidence 011223444445555444444444333333221 1134666666666666666666666666432 23345
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHH---
Q 043758 575 SYPYTALISGLVKKGMVDLGCMYLDRMLAD--GFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYI--- 649 (918)
Q Consensus 575 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--- 649 (918)
..-+..+.+.+.+.+....+..++.++.+. +-.....++-.+++.....|+.+...++++-+...|+..+...|.
T Consensus 528 ~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhL 607 (1088)
T KOG4318|consen 528 LPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHL 607 (1088)
T ss_pred cHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEe
Confidence 555666666666666666666666666554 111112334445555555666666666665555544322111000
Q ss_pred ---------HHHH-HHhhhcccccccccccccchhhhHHHHHHhh-cCcccccchhhh---HHHHHhCCChhHHH-----
Q 043758 650 ---------ALVS-GVCRRITGRKKWLDVNRCSDSGKEMLFHKLQ-QGTLVTRTKSTA---FSAVFSNGKKGTVQ----- 710 (918)
Q Consensus 650 ---------~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~g~~~~a~----- 710 (918)
.+-. .+-+....... .+.+-+... ..........+. ...+.++|++.++-
T Consensus 608 rkdd~s~a~ea~e~~~qkyk~~P~~-----------~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~et 676 (1088)
T KOG4318|consen 608 RKDDQSAAQEAPEPEEQKYKPYPKD-----------LEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITET 676 (1088)
T ss_pred eccchhhhhhcchHHHHHhcCChHH-----------HHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhcccc
Confidence 0000 00000000000 000111111 000000000000 00133344444443
Q ss_pred ----------------------HHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 043758 711 ----------------------KIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILIN 768 (918)
Q Consensus 711 ----------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 768 (918)
...+.+.+.| ...-++..|.+.|+++.|..+|.++. +.|+..+...|..
T Consensus 677 pG~r~r~~RDr~~de~e~~~lEll~elt~~lg------~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAs 747 (1088)
T KOG4318|consen 677 PGVRCRNGRDRDTDEGEIVPLELLLELTHELG------KNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLAS 747 (1088)
T ss_pred CcccccCCCccccccCccccHHHHHHHHhHhH------HHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHH
Confidence 3333333222 12237788899999999999999988 6777777666666
Q ss_pred HHHhc---CCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 043758 769 GHIAA---GEIDQAIGLFNQMNAD--GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCAN 843 (918)
Q Consensus 769 ~~~~~---g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 843 (918)
.+.+. -++.++...-++.... .+..+...|..-+...++...-+.|.+.+.+..+.....+..++..++.++...
T Consensus 748 Ilr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~n 827 (1088)
T KOG4318|consen 748 ILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKN 827 (1088)
T ss_pred HHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhc
Confidence 55543 2555555555555443 222233444444444555566668888998888775555777888888875544
Q ss_pred CChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 043758 844 CLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQI 886 (918)
Q Consensus 844 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 886 (918)
. ..|...... |.......-..++..+.+...|.+|..
T Consensus 828 d--~~aa~sha~----Ges~~~l~tsRli~~llRrlgl~EA~~ 864 (1088)
T KOG4318|consen 828 D--QLAAQSHAS----GESSKELLTSRLINILLRRLGLAEALS 864 (1088)
T ss_pred C--HHHHHhccc----ccchhhhhhHHHHHHHHHHhhHHHHHH
Confidence 4 222222221 323333344556667777777777776
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-15 Score=172.16 Aligned_cols=410 Identities=9% Similarity=0.010 Sum_probs=287.9
Q ss_pred CchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHH
Q 043758 411 LANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSAL 490 (918)
Q Consensus 411 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~ 490 (918)
.++......+......|+.++|+.++....... +.....+..+..++... |++++|.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~----------------------g~~~~A~ 69 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNL----------------------KQWQNSL 69 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc----------------------CCHHHHH
Confidence 334555667777888999999999988887522 23333456666665544 4666677
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 043758 491 DILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENS 570 (918)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 570 (918)
.++++..+..+ .+...+..++..+...|++++|...++++.+.. +.+.. +..+..++...|++++|+..++++.+..
T Consensus 70 ~~~~~al~~~P-~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 70 TLWQKALSLEP-QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA 146 (765)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77777776533 356677788888888999999999999988763 44555 7778888888999999999999988863
Q ss_pred CCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHH
Q 043758 571 VQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNV------VLYTALINHFL-----RAGEF---EFASRLENLM 636 (918)
Q Consensus 571 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~ 636 (918)
+.+...+..+..++...|..+.|+..++.... .|+. .....++.... ..+++ ++|+..++.+
T Consensus 147 -P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 147 -PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred -CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 22444555667777778888888888876553 2221 01111222221 11223 5667777776
Q ss_pred HHC-CCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHH
Q 043758 637 VTN-QIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLK 715 (918)
Q Consensus 637 ~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 715 (918)
.+. ...|+... .... ........+...|++++|+..|+.
T Consensus 223 l~~~~~~p~~~~--~~~~--------------------------------------a~~d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 223 EALWHDNPDATA--DYQR--------------------------------------ARIDRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred HhhcccCCccch--HHHH--------------------------------------HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 643 12222110 0000 000111233455899999999999
Q ss_pred HHhcCCC-CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 716 VKDIEFM-PNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN-----QVTFCILINGHIAAGEIDQAIGLFNQMNAD 789 (918)
Q Consensus 716 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 789 (918)
+.+.+.+ |+ .....+...|...|++++|+..|+++.+.. |. ......+..++...|++++|.++++.+.+.
T Consensus 263 ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 263 LKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred hhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 9877532 22 122335778999999999999999987642 32 234566777889999999999999999875
Q ss_pred C-----------CCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHH
Q 043758 790 G-----------CVPD---KTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKE 855 (918)
Q Consensus 790 ~-----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 855 (918)
. -.|+ ...+..+...+...|++++|+++++++... .+.+...+..+...+...|++++|++.+++
T Consensus 340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2 1123 234566778899999999999999999864 344666788888899999999999999999
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 856 MIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 856 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
++... |.+...+..++..+...|++++|..+++++.+..
T Consensus 419 al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 419 AEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99987 7788999999999999999999999999998764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-15 Score=172.16 Aligned_cols=398 Identities=13% Similarity=0.010 Sum_probs=247.9
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYAL 178 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~ 178 (918)
-..-.+.+....|+.++|+.+|.+..... +.+...+..+..++...|++++|.+.++...+. .+.+...+..+..++
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l 93 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 33445555666777777777777766532 334445777777777777777777777777651 233344555666667
Q ss_pred hccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHH
Q 043758 179 CKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPD-SYTCNTLIHGFFKMGLFDKG 257 (918)
Q Consensus 179 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a 257 (918)
...|++++|...+++..+..+. +.. +..+..++...|+.++|+..++++.+. .|+ ...+..+..++...+..+.|
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHH
Confidence 7777777777777777766333 455 777777777777777777777777765 333 33445556666666777777
Q ss_pred HHHHHHHHhCCCCccH------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHhhCC-CCCCcc-hH----HHHHHH
Q 043758 258 WVLYSQMSDWGFQPNM------VTDLIMISNYC-----REGEV---DAALMLLNSKVSSN-LAPSVH-CY----TVLIDA 317 (918)
Q Consensus 258 ~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~~-~~~~~~-~~----~~ll~~ 317 (918)
.+.++.... .|+. .....++..+. ..+++ ++|++.++.+.+.- ..|+.. .+ ...+..
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 777765543 1221 01112222221 12233 67888888777531 122221 11 111345
Q ss_pred HHhcCChhHHHHHHHHHHhCCCC-CChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHH
Q 043758 318 LYKHNRLMEVDELYKKMLANRVA-PDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQE 396 (918)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (918)
+...|++++|+..|+.+.+.+.. |+..
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a---------------------------------------------------- 274 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWA---------------------------------------------------- 274 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHH----------------------------------------------------
Confidence 56778899999999988776422 2211
Q ss_pred HHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCc-----ccHHHHHHHHHhcCChhhHHHHH
Q 043758 397 IELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLV-----FTCNTLIKCFYQVGFLEGANAIV 471 (918)
Q Consensus 397 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~ 471 (918)
...+...|...|++++|+..|+++.... |.. .....+..++...+
T Consensus 275 -------------------~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g--------- 324 (765)
T PRK10049 275 -------------------QRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESE--------- 324 (765)
T ss_pred -------------------HHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcc---------
Confidence 1113456677777777777777766532 221 12333333444443
Q ss_pred HHhhcccCccccCChHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043758 472 ELMQDTEGNCKWGNLDSALDILDQMEVRGP-----------KPS---VAIYDAIIGHLCKEKRILEAEDMFKRMLKAGID 537 (918)
Q Consensus 472 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 537 (918)
++++|...++.+....+ .|+ ...+..+...+...|++++|+++++++.... +
T Consensus 325 -------------~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P 390 (765)
T PRK10049 325 -------------NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-P 390 (765)
T ss_pred -------------cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 44444444444443311 123 2345667778888899999999999988763 5
Q ss_pred CcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-chhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 538 PDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPG-SYPYTALISGLVKKGMVDLGCMYLDRMLAD 604 (918)
Q Consensus 538 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 604 (918)
.+...+..+...+...|++++|++.+++..... |+ ...+......+...|++++|..+++++++.
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 567778888888889999999999999888763 44 455566666788888999999999998886
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-14 Score=162.04 Aligned_cols=443 Identities=11% Similarity=0.013 Sum_probs=307.0
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHc
Q 043758 421 SALCKGGKYEKAYVCLFQLVNFGYRPLVF-TCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVR 499 (918)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 499 (918)
-...+.|+++.|+..|++..+. .|+.. ....++..+...| +.++|+..+++....
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G----------------------~~~~A~~~~eka~~p 97 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAG----------------------RDQEVIDVYERYQSS 97 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcC----------------------CcHHHHHHHHHhccC
Confidence 3456889999999999999875 35542 2336666655444 556666677776621
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHH
Q 043758 500 GPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYT 579 (918)
Q Consensus 500 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 579 (918)
.+.+......+...+...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++.+. .|+...+.
T Consensus 98 -~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l 173 (822)
T PRK14574 98 -MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYM 173 (822)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHH
Confidence 12234444445667888899999999999998874 344666667778888889999999999988876 45555554
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHH--HHHHhh
Q 043758 580 ALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIAL--VSGVCR 657 (918)
Q Consensus 580 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l--l~~~~~ 657 (918)
.++..+...++..+|+..++++.+.. +.+...+..++.++.+.|-...|.++...-... +.+...-+... +....+
T Consensus 174 ~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr 251 (822)
T PRK14574 174 TLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVR 251 (822)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHh
Confidence 44444444566666899999988874 456777788888888888888887666543210 22222111000 000011
Q ss_pred hcccccccccccc--cchhhhHHHHHHhh---cCcc----cccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhH
Q 043758 658 RITGRKKWLDVNR--CSDSGKEMLFHKLQ---QGTL----VTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLY 728 (918)
Q Consensus 658 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 728 (918)
....... ..-++ .+...-..+...+. ..|. ......+-+-++...|++.++++.++.+...+.+....+-
T Consensus 252 ~a~~~~~-~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~ 330 (822)
T PRK14574 252 MAVLPTR-SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR 330 (822)
T ss_pred hcccccc-cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence 0000000 00000 01111111122222 2232 1233446666888899999999999999988877677788
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCC-----CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------C
Q 043758 729 NDIFLLLCGVGRMDDAYDHFQMMKREGL-----RPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGC-----------V 792 (918)
Q Consensus 729 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~ 792 (918)
..+.++|...+++++|..+|+++..... .++......|..+|...+++++|..+++.+.+... .
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 410 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE 410 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence 9999999999999999999999976431 22333357789999999999999999999988411 2
Q ss_pred CCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHH
Q 043758 793 PDK---TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCN 869 (918)
Q Consensus 793 p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 869 (918)
|++ ..+..++..+...|++.+|++.++++... -+-|......+...+...|++..|+..++.+.... |.+..+..
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~ 488 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILER 488 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHH
Confidence 332 34455677788999999999999999863 34477788899999999999999999998888775 77888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043758 870 WLLNILCQEKHFHEAQIVLDVMHKRGR 896 (918)
Q Consensus 870 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 896 (918)
..+.++...|+|.+|..+.+.+.+.-.
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 999999999999999999988766553
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.3e-14 Score=134.16 Aligned_cols=343 Identities=18% Similarity=0.246 Sum_probs=231.9
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChhH-HHHHHHHHHhCCCCccHhhHHHHH
Q 043758 204 LMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHG--FFKMGLFDK-GWVLYSQMSDWGFQPNMVTDLIMI 280 (918)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~ 280 (918)
.+-|.|+.. +..|..+++.-+|++|.+.|++.+...--.|++. |..+.++-- -++.|-.|.+.| ..+..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW---- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc----
Confidence 344555543 3567777777778888777766665554444442 222223222 234555555555 3333333
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHH
Q 043758 281 SNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQ 360 (918)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 360 (918)
+.|++.+ ++-+.. +.+..++..||.++++-...+.|.++|++-.+...+.+..+|+.++.+.
T Consensus 191 ----K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~------- 252 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGAS------- 252 (625)
T ss_pred ----ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHH-------
Confidence 3454443 333333 5677889999999998888888999988888777777777776665421
Q ss_pred HHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHH
Q 043758 361 HALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLV 440 (918)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 440 (918)
.|.. ..+++.+|.
T Consensus 253 -------------------------------------------------------------S~~~------~K~Lv~EMi 265 (625)
T KOG4422|consen 253 -------------------------------------------------------------SYSV------GKKLVAEMI 265 (625)
T ss_pred -------------------------------------------------------------Hhhc------cHHHHHHHH
Confidence 1111 156777888
Q ss_pred HCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043758 441 NFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKR 520 (918)
Q Consensus 441 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 520 (918)
.....||..|+|+++.+.++.|+++.|.. .|.+++.+|++.|+.|+..+|..++..+++.++
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~d 327 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARK------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESD 327 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHH------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCC
Confidence 88889999999999999999888877653 577889999999999999999999998888877
Q ss_pred HHH-HHHHHHHHHH----CCC----CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC----CCCC---chhHHHHHHH
Q 043758 521 ILE-AEDMFKRMLK----AGI----DPDEVFFTTMINGYLQNRKPIEACQLFEKMKENS----VQPG---SYPYTALISG 584 (918)
Q Consensus 521 ~~~-a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~ 584 (918)
..+ +..++.++.. +.+ +.+...|...+..|....+.+-|.++..-+.... +.|+ ..-|..+...
T Consensus 328 p~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~l 407 (625)
T KOG4422|consen 328 PQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDL 407 (625)
T ss_pred chhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHH
Confidence 643 4555555543 222 2345667777888888888888877766554221 2232 2335567777
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 043758 585 LVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGV 655 (918)
Q Consensus 585 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 655 (918)
.|.....+.-..+|+.|+-.-+-|+..+...++.+..-.|.++-.-++|.++...|.......-..++..+
T Consensus 408 icq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L 478 (625)
T KOG4422|consen 408 ICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL 478 (625)
T ss_pred HHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 78888888888999999887777888888888898888888888888888888766444433333333333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.9e-14 Score=155.69 Aligned_cols=443 Identities=11% Similarity=0.012 Sum_probs=286.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.+.|+++.|+..|+++++.++.-.+..+ .++..+...|+.++|+..+++..... +.+......++..+...|++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999999988754222233 88888888999999999999988222 222223333356788889999999
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
++|+.+.+. .+.+...+..++..+...++.++|...++++.... |+...+..++..+...++..+|++.++++.+.
T Consensus 123 ely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 123 ALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 999999872 23345666677888999999999999999998873 34455544444444466776799999999987
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhH------HHHHHHH---H--hcCC---HHHHHHHHHH
Q 043758 233 GCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTD------LIMISNY---C--REGE---VDAALMLLNS 298 (918)
Q Consensus 233 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~g~---~~~A~~~~~~ 298 (918)
. +-+...+..+..++.+.|-...|.++.++-... +.+....+ ..++..- . ...+ .+.|..-++.
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 3 234556788888999999999998877764322 11111111 1111110 0 1112 3444555555
Q ss_pred HhhCC-CCCCc-chH----HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhc
Q 043758 299 KVSSN-LAPSV-HCY----TVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKI 372 (918)
Q Consensus 299 ~~~~~-~~~~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 372 (918)
+...- ..|.. ..| .-.+-++...|++.++++.|+.|...+.+.-.
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~----------------------------- 327 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD----------------------------- 327 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH-----------------------------
Confidence 44321 11221 222 23345666777888888888888766543222
Q ss_pred CCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCC-----CCC
Q 043758 373 GCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGY-----RPL 447 (918)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~ 447 (918)
.+-..+.++|...+++++|+.+|+.+..... .++
T Consensus 328 -----------------------------------------y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~ 366 (822)
T PRK14574 328 -----------------------------------------YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD 366 (822)
T ss_pred -----------------------------------------HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc
Confidence 3345666777777777777777777754321 112
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 043758 448 VFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSV-AIYDAIIGHLCKEKRILEAED 526 (918)
Q Consensus 448 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 526 (918)
......|.-++...+++++|..+++.+.+...+ ...+ +. .....+.||- ..+..++..+.-.|++.+|++
T Consensus 367 ~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~-~~~~-------~~-~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 367 LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY-QVGV-------YG-LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-EEec-------cC-CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 222345555555555444444433333221000 0000 00 0000122332 234456677888999999999
Q ss_pred HHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 527 MFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLAD 604 (918)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 604 (918)
.++++.... |-|......+...+...|.+.+|.+.++...... +-+..+....+.++...|++.+|..+.+.+.+.
T Consensus 438 ~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 438 KLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999998764 6688889999999999999999999997777652 334566677788888999999999999999876
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-14 Score=136.05 Aligned_cols=468 Identities=14% Similarity=0.088 Sum_probs=307.7
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH--cCCChhHH-HHHHHHHHhcCCCCCCcccHHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLC--YKGFLDEV-LEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
+=|.+++. ...|.+.++.-+|+.|...+++.+...-..+++.-+ ...++.-| .+.|-.|.+ .| ..+..+|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~-~~-E~S~~sW---- 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRN-FG-EDSTSSW---- 190 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccc-cc-ccccccc----
Confidence 45566654 677899999999999999998888777766665533 33333323 244555543 22 2333444
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFD 255 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 255 (918)
+.|.+.+ ++-+..-+ +..+|.+||.+.++--..+.|.+++++......+.+..+||.+|.+-.- .
T Consensus 191 ----K~G~vAd---L~~E~~PK----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~ 255 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPK----TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----S 255 (625)
T ss_pred ----ccccHHH---HHHhhcCC----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----h
Confidence 3344433 33333322 7889999999999999999999999999887778899999999876543 2
Q ss_pred HHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHH----HHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhH-HHHH
Q 043758 256 KGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAA----LMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLME-VDEL 330 (918)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~ 330 (918)
...+++.+|....+.||..|+|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++-+++.+ |..+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 3378999999999999999999999999999988765 5677889999999999999999999999888754 4455
Q ss_pred HHHHHh----CCCCC----ChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHH
Q 043758 331 YKKMLA----NRVAP----DHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLR 402 (918)
Q Consensus 331 ~~~~~~----~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 402 (918)
+.+++. ...+| |...|...+..|....|.+.|.++...........- .+..
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~------------ig~~--------- 394 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF------------IGPD--------- 394 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh------------cChH---------
Confidence 555543 22333 445677888889888888888877665443211100 0000
Q ss_pred HHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccc
Q 043758 403 KIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCK 482 (918)
Q Consensus 403 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 482 (918)
.-...-|..+....+.....+.-..+|+.|.-.-+-|+..+...++++....+.++-..+++..+... ..
T Consensus 395 -------~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~---gh 464 (625)
T KOG4422|consen 395 -------QHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY---GH 464 (625)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh---hh
Confidence 00113456677778888888999999999987777788888889999888888887777777766532 22
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCH-HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHH
Q 043758 483 WGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKE-KRI-LEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEAC 560 (918)
Q Consensus 483 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 560 (918)
.-+-+-...++..+....+.|+...-..+-....++ -++ +..+..-.++.+.. .+....+...-.+.+.|..++|.
T Consensus 465 t~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~ 542 (625)
T KOG4422|consen 465 TFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAW 542 (625)
T ss_pred hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHH
Confidence 223334445555555555555433222222222222 111 22222233344433 34445666666778889999999
Q ss_pred HHHHHHHhCC-CCCCchhHH---HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043758 561 QLFEKMKENS-VQPGSYPYT---ALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFL 621 (918)
Q Consensus 561 ~~~~~~~~~~-~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 621 (918)
++|..+.+.+ --|-....+ .+++.-...++...|...++-|...+++.-...-+.++..|.
T Consensus 543 e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~ 607 (625)
T KOG4422|consen 543 EMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFA 607 (625)
T ss_pred HHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcC
Confidence 9998886543 223333344 556666677888888888888876653322223344444443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-14 Score=147.06 Aligned_cols=715 Identities=13% Similarity=0.045 Sum_probs=387.5
Q ss_pred HHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhC
Q 043758 118 DYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 197 (918)
.++-.+...|+.||..||..+|..|+..|+.+.|- +|.-|.- .+.+.+...|+.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCC---------
Confidence 45566778899999999999999999999999999 9999987 778889999999999999999887776
Q ss_pred CCCCChhhHHHHHHHHhcCCChHH---HHHHHHHHH----hcCCCCChhh--------------HHHHHHHHHhcCChhH
Q 043758 198 GFYVDKLMYTSLINGYCSNRNMKM---AMRLFFRML----KTGCEPDSYT--------------CNTLIHGFFKMGLFDK 256 (918)
Q Consensus 198 ~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~----~~~~~p~~~~--------------~~~ll~~~~~~g~~~~ 256 (918)
.|-..+|..|..+|...||... ..+.+..+. ..|+.....- -..++.-....|-++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 5688999999999999998654 333222222 1121110111 1122223344455566
Q ss_pred HHHHHHHHHhCCCCccHhhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 257 GWVLYSQMSDWGFQPNMVTDLIMISNYCRE-GEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKML 335 (918)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (918)
+.+++..+...... .+... ++.-.... ..+++-..+...... .|+..+|.+++.+-..+|+.+.|..++.+|.
T Consensus 158 llkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 66666555433211 11111 12222222 223333333333333 5899999999999999999999999999999
Q ss_pred hCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHh
Q 043758 336 ANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVA 415 (918)
Q Consensus 336 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 415 (918)
+.|.+.+.+.|..++.+ .++......++..+...|..++.......-.-....+.... .....+....
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~---------~~e~sq~~hg 299 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY---------GEEGSQLAHG 299 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh---------cccccchhhh
Confidence 99999999999888876 67777788888888888877765432211110000000000 0001111122
Q ss_pred HHHHHHHHHccC-----Ch-----HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCC
Q 043758 416 FTIYISALCKGG-----KY-----EKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGN 485 (918)
Q Consensus 416 ~~~li~~~~~~g-----~~-----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 485 (918)
+++-+..-.-.| .. .-....+++..-.|+.....+|...+. ....|+-++..++...+.....-.....
T Consensus 300 ~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~ 378 (1088)
T KOG4318|consen 300 FTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQN 378 (1088)
T ss_pred hhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcch
Confidence 222222222222 11 112222222222233333333433333 3336777777777666654311111111
Q ss_pred h----HHHHHHHHHHHHc----------CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-------C
Q 043758 486 L----DSALDILDQMEVR----------GPKP--SVAIYDAIIGHLCKEKRILEAEDMFKRMLK----AGID-------P 538 (918)
Q Consensus 486 ~----~~a~~~~~~~~~~----------~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-------~ 538 (918)
+ ....+.|.+.... |+.. +....--+.....+. +...+.+-+..... ..+. +
T Consensus 379 V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~ 457 (1088)
T KOG4318|consen 379 VDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHL 457 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhH
Confidence 1 1233444444321 1111 011111112222222 33333333322221 1111 1
Q ss_pred cHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHH
Q 043758 539 DEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLAD--GFVPNVVLYTAL 616 (918)
Q Consensus 539 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l 616 (918)
-...-+.++..|+..-+..+++..-++....- -+ ..|..||+-++...+.+.|..+.++.... .+..+..-+..+
T Consensus 458 irdi~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l 534 (1088)
T KOG4318|consen 458 IRDIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSL 534 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHH
Confidence 22345667777777777777665544443321 12 57999999999999999999999988765 445677889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcc--HHHHHHHHHHHhhhcccccccccccccchhhhHHHHH-Hhhc-Ccccc--
Q 043758 617 INHFLRAGEFEFASRLENLMVTNQIEFD--LIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFH-KLQQ-GTLVT-- 690 (918)
Q Consensus 617 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~-- 690 (918)
.+.+.+.+...++..++.++.+.-...+ ..+.--+++.....+... ..+.+.+.+.. .+.. +|...
T Consensus 535 ~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe--------~Lkkl~d~lvslgl~etgPl~~vh 606 (1088)
T KOG4318|consen 535 QDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQE--------KLKKLADILVSLGLSETGPLWMVH 606 (1088)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHH--------HHHHHHHHHHHhhhhhcccceEEE
Confidence 9999999999999999999887433222 222223333322211110 01111111110 0111 22100
Q ss_pred -------cchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChh---hHHHHHHHHHccCChhHHHHHHHHH--H-HcC--
Q 043758 691 -------RTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLY---LYNDIFLLLCGVGRMDDAYDHFQMM--K-REG-- 755 (918)
Q Consensus 691 -------~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m--~-~~~-- 755 (918)
.........+.+..-.....+.+-++...+-..++. -+.+=+..|.+.|+..+|-++.+.= . +.+
T Consensus 607 Lrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RD 686 (1088)
T KOG4318|consen 607 LRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRD 686 (1088)
T ss_pred eeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCc
Confidence 000111112222222233333333332222222211 1112223356666666665554320 0 000
Q ss_pred -------CCC---------cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh---HHHH
Q 043758 756 -------LRP---------NQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLS---HVFS 816 (918)
Q Consensus 756 -------~~p---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~---~A~~ 816 (918)
+.| +......|+..|.+.|+++.|..+|.+++ +.|...+...|...+.+..... ++..
T Consensus 687 r~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~ 763 (1088)
T KOG4318|consen 687 RDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQA 763 (1088)
T ss_pred cccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHH
Confidence 000 01112337778889999999999999887 5678888778888777666433 3333
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 043758 817 VFYSMHKR--GFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEK 879 (918)
Q Consensus 817 ~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 879 (918)
..++..+. ..+.+..-+...+...++...-+.|.+.+.+..+...+.+...+....+++.+..
T Consensus 764 e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 764 ETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND 828 (1088)
T ss_pred HHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC
Confidence 33333321 1122333333333333444555568888888888775667777778888877766
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9e-14 Score=133.89 Aligned_cols=496 Identities=14% Similarity=0.078 Sum_probs=285.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCcc----HhhHHHHH
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTC-NTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN----MVTDLIMI 280 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~ 280 (918)
...|..-|..+....+|+..|+-+++...-|+.-.. ..+.+.+.+..++.+|+++++-.+..-...+ ....+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 344555666677778888888887776666665432 2334556677778888888877765421111 22344444
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHH
Q 043758 281 SNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQ 360 (918)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 360 (918)
-.+.+.|++++|...|+...+.. |+..+-..|+-++..-|+.++..+.|.+|..-...||...|.. ...+++
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~------~~ddp~ 355 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK------EKDDPD 355 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC------CcCCcc
Confidence 55778899999999998877654 7776665666677778888888888888887655565543310 000000
Q ss_pred HHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccC--ChHHHHHHHHH
Q 043758 361 HALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGG--KYEKAYVCLFQ 438 (918)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~ 438 (918)
+.. ..++ .-+..+.-.-+.. +.++++-.-..
T Consensus 356 ----------------~~l--------------l~ea-----------------i~nd~lk~~ek~~ka~aek~i~ta~k 388 (840)
T KOG2003|consen 356 ----------------DNL--------------LNEA-----------------IKNDHLKNMEKENKADAEKAIITAAK 388 (840)
T ss_pred ----------------hHH--------------HHHH-----------------HhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 000 0000 0011111111111 11222222222
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043758 439 LVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKE 518 (918)
Q Consensus 439 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 518 (918)
++.--+.|+-.. -.+..++.+..........+..+ .-..-|.++
T Consensus 389 iiapvi~~~fa~----------------------------------g~dwcle~lk~s~~~~la~dlei--~ka~~~lk~ 432 (840)
T KOG2003|consen 389 IIAPVIAPDFAA----------------------------------GCDWCLESLKASQHAELAIDLEI--NKAGELLKN 432 (840)
T ss_pred Hhccccccchhc----------------------------------ccHHHHHHHHHhhhhhhhhhhhh--hHHHHHHhc
Confidence 222112222110 00111111111111000001110 112346677
Q ss_pred CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-HHc-CCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHH
Q 043758 519 KRILEAEDMFKRMLKAGIDPDEVFFTTMING-YLQ-NRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCM 596 (918)
Q Consensus 519 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 596 (918)
|+++.|+++++-..+..-+.-...-+.+-.. |.+ .+++..|.+.-+..+..+ .-+......-.......|++++|.+
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 8888888777776654322222222222222 222 234555555555544321 1121111111122234567777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhh
Q 043758 597 YLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGK 676 (918)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 676 (918)
.|++.......-....||.- -.+...|+.++|+..|-++..
T Consensus 512 ~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~-------------------------------------- 552 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHA-------------------------------------- 552 (840)
T ss_pred HHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHH--------------------------------------
Confidence 77777655322223333322 224556666666666555431
Q ss_pred HHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 043758 677 EMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGL 756 (918)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 756 (918)
-+..+......+...|....+...|++++-+.... +
T Consensus 553 -------------------------------------------il~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 553 -------------------------------------------ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred -------------------------------------------HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 01234555666677787788899999998777653 4
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 043758 757 RPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHL 836 (918)
Q Consensus 757 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 836 (918)
+.|+....-|...|-+.|+-.+|.+.+-.--.. ++.+.++..+|...|....-+++|+.+|++..- +.|+...|..+
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlm 665 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLM 665 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 556678888889999999999999876655443 556788889999999999999999999998763 78999999988
Q ss_pred HH-HHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 043758 837 LE-CFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKH 880 (918)
Q Consensus 837 ~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (918)
+. |+.+.|+++.|+.+++...+.- |.|...+.-|+++....|-
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrkf-pedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRKF-PEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhC-ccchHHHHHHHHHhccccc
Confidence 86 7778999999999999988764 8888888888888766653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-13 Score=129.62 Aligned_cols=489 Identities=15% Similarity=0.088 Sum_probs=295.2
Q ss_pred cHHHHH---HHHhccCchHHHHHHHHHHHhCCCCCChhhH-HHHHHHHhcCCChHHHHHHHHHHHhcCCCCCh--hh---
Q 043758 170 PYKSLF---YALCKNIRTVEAESFAREMESQGFYVDKLMY-TSLINGYCSNRNMKMAMRLFFRMLKTGCEPDS--YT--- 240 (918)
Q Consensus 170 ~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~--- 240 (918)
+|..|. .-|.....+.+|...++-+.+....|+.... -.+...|.+..++.+|+..|+..... .|++ .+
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rik 277 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIK 277 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHH
Confidence 444444 4455667788999999998887777776543 34556788899999999999887765 3332 22
Q ss_pred -HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcc--------hH
Q 043758 241 -CNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVH--------CY 311 (918)
Q Consensus 241 -~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------~~ 311 (918)
.+.+.-.+.+.|.++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|..+...-..+|.. .-
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 333333567899999999999998876 5777766666667778899999999999988643223222 12
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCC
Q 043758 312 TVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTG 391 (918)
Q Consensus 312 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (918)
..|+.--+++. .++.|.+.. +.+...+ +..-..+...-..++-.
T Consensus 356 ~~ll~eai~nd-------~lk~~ek~~-ka~aek~----------------i~ta~kiiapvi~~~fa------------ 399 (840)
T KOG2003|consen 356 DNLLNEAIKND-------HLKNMEKEN-KADAEKA----------------IITAAKIIAPVIAPDFA------------ 399 (840)
T ss_pred hHHHHHHHhhH-------HHHHHHHhh-hhhHHHH----------------HHHHHHHhccccccchh------------
Confidence 22222222211 122222111 0000000 00000000000000000
Q ss_pred ChHHHHHHHHHHHHhcCCC-CchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHH-HHhcCChhhHHH
Q 043758 392 DLCQEIELLLRKIVKSDPK-LANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKC-FYQVGFLEGANA 469 (918)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~ 469 (918)
....-.++.+...... .....--.-...+.++|+++.|+++++-..+..-......-+.+-.. +.+-|
T Consensus 400 ---~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqgg------- 469 (840)
T KOG2003|consen 400 ---AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGG------- 469 (840)
T ss_pred ---cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcc-------
Confidence 0000000000000000 00000112234577899999999999888754322222122222111 11112
Q ss_pred HHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 043758 470 IVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMING 549 (918)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (918)
.++..|.+.-+..+....- +......-......+|++++|.+.|++.......-....||+- -.
T Consensus 470 --------------k~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig-lt 533 (840)
T KOG2003|consen 470 --------------KDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG-LT 533 (840)
T ss_pred --------------cchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc-cc
Confidence 2445555555544432111 2222222223334568899999999888864322222233322 24
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043758 550 YLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFA 629 (918)
Q Consensus 550 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 629 (918)
+-..|+.++|++.|-++..- +..+..++..+...|-...+...|++++.+.... ++.|+.+...|.+.|-+.|+-..|
T Consensus 534 ~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhh
Confidence 55678888888888776532 2345667777778888888888888888776654 456788888888888888888887
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHH
Q 043758 630 SRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTV 709 (918)
Q Consensus 630 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a 709 (918)
.+.+-.--
T Consensus 612 fq~~ydsy------------------------------------------------------------------------ 619 (840)
T KOG2003|consen 612 FQCHYDSY------------------------------------------------------------------------ 619 (840)
T ss_pred hhhhhhcc------------------------------------------------------------------------
Confidence 76543321
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 043758 710 QKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHI-AAGEIDQAIGLFNQMNA 788 (918)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~ 788 (918)
.-++-+..+...|...|....-+++|+.+|++..- +.|+..-|..++..|. +.|++.+|..+|+....
T Consensus 620 ---------ryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 620 ---------RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred ---------cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22355778888888888888889999999998765 7899999988887655 78999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC
Q 043758 789 DGCVPDKTVYNTLLKGLCQAGR 810 (918)
Q Consensus 789 ~~~~p~~~~~~~l~~~~~~~g~ 810 (918)
. ++-|..++.-|++.+...|.
T Consensus 689 k-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 689 K-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred h-CccchHHHHHHHHHhccccc
Confidence 5 76788999999998887773
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-11 Score=116.55 Aligned_cols=463 Identities=12% Similarity=0.077 Sum_probs=334.4
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCC
Q 043758 85 FDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGL 164 (918)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (918)
|+.-+..+. .+...|....+.-..++++..|.++|+++++.+ ..+...|--.+..-.+...+..|..++++... .
T Consensus 62 fEd~irrnR-~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt---~ 136 (677)
T KOG1915|consen 62 FEDQIRRNR-LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVT---I 136 (677)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHH---h
Confidence 444444332 255577777777788899999999999999877 55777888888888899999999999999986 3
Q ss_pred CCC-cccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHH
Q 043758 165 VPA-LHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNT 243 (918)
Q Consensus 165 ~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 243 (918)
-|. ...|...+-+--..|++..|.++|++-.+- .|+...|++.|..-.+.+..+.|..++++.+-. +|++.+|..
T Consensus 137 lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wik 212 (677)
T KOG1915|consen 137 LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIK 212 (677)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHH
Confidence 343 344555555555679999999999998874 789999999999999999999999999999865 799999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC-CC-CccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--cchHHHHHHHHH
Q 043758 244 LIHGFFKMGLFDKGWVLYSQMSDW-GF-QPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPS--VHCYTVLIDALY 319 (918)
Q Consensus 244 ll~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~ 319 (918)
..+.-.++|+...+..+|+..++. |- ..+...+.++...=.++..++.|.-+|+-.++.- |.+ ...|......--
T Consensus 213 yarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 213 YARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHH
Confidence 888888999999999999998764 20 1223455555555567788899999998877652 222 223333332222
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHH
Q 043758 320 KHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIEL 399 (918)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 399 (918)
+-|+.....+..-.= -.-
T Consensus 292 qfGd~~gIEd~Iv~K--------------------------------------------------------------Rk~ 309 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGK--------------------------------------------------------------RKF 309 (677)
T ss_pred HhcchhhhHHHHhhh--------------------------------------------------------------hhh
Confidence 334433333221000 000
Q ss_pred HHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCc--ccHHHHHHHHHhcCChhhHHHHHHHhhcc
Q 043758 400 LLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLV--FTCNTLIKCFYQVGFLEGANAIVELMQDT 477 (918)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 477 (918)
-++.....+| .+-.+|-..+..-...|+.+...++|+..+.. ++|-. ..|...|-.+..-. +|+.+
T Consensus 310 qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYa-------lyeEl--- 377 (677)
T KOG1915|consen 310 QYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYA-------LYEEL--- 377 (677)
T ss_pred HHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHH-------HHHHH---
Confidence 1122222222 23367777788778889999999999998865 34422 22333333222211 11111
Q ss_pred cCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcC
Q 043758 478 EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAII----GHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQN 553 (918)
Q Consensus 478 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 553 (918)
...+.+.+.+++...++. ++....|+.-+- ....++.++..|.+++..... ..|-..+|...|..-.+.
T Consensus 378 ----e~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL 450 (677)
T KOG1915|consen 378 ----EAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQL 450 (677)
T ss_pred ----HhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHH
Confidence 335788888999888885 555556655544 444567899999999998875 489999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043758 554 RKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLAD-GFVPNVVLYTALINHFLRAGEFEFASRL 632 (918)
Q Consensus 554 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 632 (918)
++++.+..++++.++.+ +.+..+|......=...|+.+.|..+|+-.++. ........|.+.|+.-...|.++.|..+
T Consensus 451 ~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 451 REFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred hhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 99999999999999886 456778887777777899999999999999876 2334567888889988999999999999
Q ss_pred HHHHHHC
Q 043758 633 ENLMVTN 639 (918)
Q Consensus 633 ~~~~~~~ 639 (918)
|+++++.
T Consensus 530 YerlL~r 536 (677)
T KOG1915|consen 530 YERLLDR 536 (677)
T ss_pred HHHHHHh
Confidence 9999864
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-11 Score=117.26 Aligned_cols=466 Identities=11% Similarity=0.052 Sum_probs=335.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
..++++..|..+|++++.-+. .+...|-..+..-.+...+..|..+|++++..-+..|. .|.-.+-.--..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHH
Confidence 556778899999999998663 36778888888888999999999999999876434443 4444444455679999999
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
++|++-.+ ..|+...|++.+..-.+...++.|..++++..-. .|++.+|--....-.++|+...|..+|++..+.
T Consensus 162 qiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 162 QIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 99999876 8999999999999999999999999999998865 689999999999999999999999999998864
Q ss_pred CCCCChh----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--HhhHHHHHHHHHhcCCHHHHHH--------HHHH
Q 043758 233 GCEPDSY----TCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN--MVTDLIMISNYCREGEVDAALM--------LLNS 298 (918)
Q Consensus 233 ~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~--------~~~~ 298 (918)
-.|.. .|.+...--..+..++.|.-+|+-.+..- +.+ ...|......=-+-|+...... -++.
T Consensus 237 --~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 237 --LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 12222 34444444446778889999998888762 322 3444444444344565443332 2455
Q ss_pred HhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhhHH-HHHhhCCCCccHHHHHHHHHHHHhcCCCC
Q 043758 299 KVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPD-HLLSF-ILLKNCPEGTELQHALMLLCEFAKIGCGI 376 (918)
Q Consensus 299 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 376 (918)
+...+ +-|-.+|-..++.--..|+.+...++|++...+ ++|- ...|. -.+
T Consensus 314 ~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYI-------------------------- 365 (677)
T KOG1915|consen 314 EVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYI-------------------------- 365 (677)
T ss_pred HHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHH--------------------------
Confidence 66655 567888888888888899999999999999875 4442 11110 000
Q ss_pred ChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 043758 377 DPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAF-TIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLI 455 (918)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 455 (918)
..| |..+-.-....+.+.+.++|+..++. ++...+||..+-
T Consensus 366 -------------------------------------YLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiW 407 (677)
T KOG1915|consen 366 -------------------------------------YLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIW 407 (677)
T ss_pred -------------------------------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHH
Confidence 001 11111223456778888888888873 566777887776
Q ss_pred HHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043758 456 KCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAG 535 (918)
Q Consensus 456 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 535 (918)
-.+++. ..++.++..|.+++...+ |..|...++...|..-.+.+.++....++++.++.+
T Consensus 408 lmyA~f------------------eIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 408 LMYAQF------------------EIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHHHH------------------HHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 666543 135567788888887776 456778888888888888999999999999998875
Q ss_pred CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 043758 536 IDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENS-VQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYT 614 (918)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 614 (918)
+-+..+|......-...|+.+.|..+|+-.+... +......|.+.|+-=...|.++.|..+++++++. .+...+|-
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWi 544 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWI 544 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHH
Confidence 5567788877777778899999999999888642 1112334555565556789999999999999887 34444666
Q ss_pred HHHHHHH-----HcC-----------CHHHHHHHHHHHH
Q 043758 615 ALINHFL-----RAG-----------EFEFASRLENLMV 637 (918)
Q Consensus 615 ~l~~~~~-----~~g-----------~~~~a~~~~~~~~ 637 (918)
++...-. +.+ ....|..+|++..
T Consensus 545 sFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 545 SFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred hHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 6655433 233 3456777777664
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.3e-09 Score=110.13 Aligned_cols=767 Identities=12% Similarity=0.100 Sum_probs=413.9
Q ss_pred hhhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhh-hhhhHhcCChHH
Q 043758 2 QLINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLY-QNDFVALGNIED 80 (918)
Q Consensus 2 ~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~-~~~~~~~g~~~~ 80 (918)
+|+.+|++++|.++.....++-=+-+....-|..+...+..|.+ .-.....|...|+.+.++.+= -+....+|+.+-
T Consensus 369 eLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sP--LLqYFg~LLdqGkLNk~ETLEL~RpVL~Q~RkqL 446 (1666)
T KOG0985|consen 369 ELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSP--LLQYFGTLLDQGKLNKYETLELCRPVLQQGRKQL 446 (1666)
T ss_pred HHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCc--HHHHHHHHHhcccccHHHHHHHHHHHHhhhHHHH
Confidence 57889999999999888766443344455566666666555555 334556666666554433221 112233444433
Q ss_pred HHHHHHHH-----HhCC--CCCC-----hhhH------HHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHH
Q 043758 81 ALRHFDRL-----ISKN--IVPI-----KLAC------VSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGL 142 (918)
Q Consensus 81 A~~~~~~~-----~~~~--~~~~-----~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (918)
...++.+= .+.| +.|- ..+| +-.+.+|+..|.+++++-... +.|..|| |-.+++.+
T Consensus 447 lekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~k---KvGyTPd---ymflLq~l 520 (1666)
T KOG0985|consen 447 LEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAK---KVGYTPD---YMFLLQQL 520 (1666)
T ss_pred HHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHH---HcCCCcc---HHHHHHHH
Confidence 33333210 1112 1111 1122 245566777788877766544 4466776 45556666
Q ss_pred HcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHh-------------------CCCC---
Q 043758 143 CYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMES-------------------QGFY--- 200 (918)
Q Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------------------~~~~--- 200 (918)
.+ -..+.+.++...+.+. .|...-.+.+...+........+..++-...+ .++.
T Consensus 521 ~r-~sPD~~~qFa~~l~Q~---~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVAD 596 (1666)
T KOG0985|consen 521 KR-SSPDQALQFAMMLVQD---EEPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVAD 596 (1666)
T ss_pred Hc-cChhHHHHHHHHhhcc---CCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHH
Confidence 55 6788888888877752 22223333333333333333333333222222 1110
Q ss_pred -------CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043758 201 -------VDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTG---CEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQ 270 (918)
Q Consensus 201 -------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 270 (918)
-+..-+..+...|-++|-+..|++-+..+.... +..+...-..++. +...-.++.+.+.++.|...++.
T Consensus 597 AILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~-yFg~lsve~s~eclkaml~~Nir 675 (1666)
T KOG0985|consen 597 AILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVN-YFGSLSVEDSLECLKAMLSANIR 675 (1666)
T ss_pred HHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHH-HHHhcCHHHHHHHHHHHHHHHHH
Confidence 011225567788888999999998877765320 0000001112222 33334678889999999988888
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----------CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH----
Q 043758 271 PNMVTDLIMISNYCREGEVDAALMLLNSKVSS-----------NLAPSVHCYTVLIDALYKHNRLMEVDELYKKML---- 335 (918)
Q Consensus 271 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---- 335 (918)
-+..+...+..-|...=..+.-.++|+....- ++..|......-|.+.++.|++.++.++.++--
T Consensus 676 qNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~Ydp 755 (1666)
T KOG0985|consen 676 QNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDP 755 (1666)
T ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCH
Confidence 88777776766676666666677777655432 245566777778999999999998888765421
Q ss_pred -------hCCCCCChhhHHHHHhhCCCCccHHH------------HHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHH
Q 043758 336 -------ANRVAPDHLLSFILLKNCPEGTELQH------------ALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQE 396 (918)
Q Consensus 336 -------~~~~~~~~~~~~~ll~~~~~~~~~~~------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (918)
+..--+|.. .++-.|.+.+-..+ -++++-. +.+... ....+.+++....+ .+-
T Consensus 756 ErvKNfLkeAkL~Dql---PLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQ--kvNps~--~p~VvG~LLD~dC~-E~~ 827 (1666)
T KOG0985|consen 756 ERVKNFLKEAKLTDQL---PLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQ--KVNPSR--TPQVVGALLDVDCS-EDF 827 (1666)
T ss_pred HHHHHHHHhccccccC---ceEEEecccccHHHHHHHHHHhhHHHHHHHHHh--hcCCcc--cchhhhhhhcCCCc-HHH
Confidence 100001111 12223333332221 1111111 111111 11122233322211 233
Q ss_pred HHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhh-
Q 043758 397 IELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQ- 475 (918)
Q Consensus 397 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~- 475 (918)
...++-.+...-+ -..++.-.-+.++..--+.+++.....| ..|..+++.+...|..++..-+-. +..-.
T Consensus 828 ik~Li~~v~gq~~------~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~f--LkeN~y 898 (1666)
T KOG0985|consen 828 IKNLILSVRGQFP------VDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERF--LKENPY 898 (1666)
T ss_pred HHHHHHHHhccCC------hHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHh--cccCCc
Confidence 3333333333222 3456666777888888888888888888 578889999988887665432210 00000
Q ss_pred ----cccCccccCChHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCCHHHH-----------HHHHHHHHHCCC
Q 043758 476 ----DTEGNCKWGNLDSALDILDQMEV----RGPKPSVAIYDAIIGHLCKEKRILEA-----------EDMFKRMLKAGI 536 (918)
Q Consensus 476 ----~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a-----------~~~~~~~~~~~~ 536 (918)
-..-||...++.-|.-.+++-.- -++...-..|-...+.+.+..+.+.= ..+.++..+.++
T Consensus 899 YDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal 978 (1666)
T KOG0985|consen 899 YDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTAL 978 (1666)
T ss_pred chhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcC
Confidence 00222322222222211110000 00011112233334444444443322 233444444332
Q ss_pred --CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC--CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 043758 537 --DPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSV--QPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVL 612 (918)
Q Consensus 537 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 612 (918)
..|+.-.+..+.++...+-+.+-+++++++.-.+- .-+...-+.|+-...+ -+...+.++.+++-.-+ .|+
T Consensus 979 ~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~--- 1053 (1666)
T KOG0985|consen 979 PETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APD--- 1053 (1666)
T ss_pred CccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chh---
Confidence 23555566677888888888999999988874321 1111122333333333 35567777777775443 233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccc
Q 043758 613 YTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRT 692 (918)
Q Consensus 613 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (918)
+...+...+-+++|..+|+..- .+......|+.-.
T Consensus 1054 ---ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~i------------------------------------- 1088 (1666)
T KOG0985|consen 1054 ---IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIENI------------------------------------- 1088 (1666)
T ss_pred ---HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHHh-------------------------------------
Confidence 2344556667888888888753 2222333333221
Q ss_pred hhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh
Q 043758 693 KSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIA 772 (918)
Q Consensus 693 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 772 (918)
++++.|.+.-++.. .+..|+.+..+-.+.|.+.+|++.|-+. -|...|.-+++...+
T Consensus 1089 -----------~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~ 1145 (1666)
T KOG0985|consen 1089 -----------GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASR 1145 (1666)
T ss_pred -----------hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHh
Confidence 44455555544333 4567888888888888888887766432 244567778888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 043758 773 AGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNM 852 (918)
Q Consensus 773 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 852 (918)
.|.+++-..++.-..+..-.|.+. ..|+-+|++.+++.+-.+++ ..|+......+..-|+..|.++.|.-+
T Consensus 1146 ~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1146 TGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred cCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHH
Confidence 888888887777666655555544 46777888887776665544 457777777777777777777766555
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 043758 853 FKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLD 889 (918)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 889 (918)
+... +.|..|+..+...|.+..|.+--+
T Consensus 1217 y~~v---------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1217 YSNV---------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHHh---------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5532 336667777777777777665443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.6e-09 Score=106.29 Aligned_cols=611 Identities=12% Similarity=0.100 Sum_probs=333.7
Q ss_pred HHHHHHHHHhccCChhhHHH-H--HHHHHHcCCCcCcccHHHHHHH----HHHcCCchhHHhhhhhhhHhcCChHHHHHH
Q 043758 12 AQQVIQRLIANSASLSDALS-A--ADFAAVRGMRFDSGSYSALMKK----LIKFGQSQSALLLYQNDFVALGNIEDALRH 84 (918)
Q Consensus 12 A~~~~~~~~~~~~~~~~a~~-~--~~~~~~~~~~~~~~~~~~l~~~----l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~ 84 (918)
-..++.++++..|..-..-. . .++....+..|+..+|..+-++ +....+-...+..|.+.+.++|++..-...
T Consensus 45 ~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~t 124 (835)
T KOG2047|consen 45 RNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRT 124 (835)
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHH
Confidence 34567777776665322111 1 1344455667777677665543 344445667777788888999999999999
Q ss_pred HHHHHhCC-CCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcC-
Q 043758 85 FDRLISKN-IVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKK- 162 (918)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 162 (918)
|++++..- +......|...++-....+-++-++.+|++.+... +..-+..+..++..+++++|.+.+..+..+.
T Consensus 125 fdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~ 200 (835)
T KOG2047|consen 125 FDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDE 200 (835)
T ss_pred HHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchh
Confidence 99887653 33445578888887788888899999999988553 3346777888899999999999988876421
Q ss_pred ----CCCCCcccHHHHHHHHhccCchH---HHHHHHHHHHhCCCCCC--hhhHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 043758 163 ----GLVPALHPYKSLFYALCKNIRTV---EAESFAREMESQGFYVD--KLMYTSLINGYCSNRNMKMAMRLFFRMLKTG 233 (918)
Q Consensus 163 ----~~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 233 (918)
..+.+-..|..+-....+.-+.. ....++..+... -+| ...|++|...|++.|.+++|.++|++..+.
T Consensus 201 f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~- 277 (835)
T KOG2047|consen 201 FVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT- 277 (835)
T ss_pred hhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 12334456666666666554332 233444444433 234 346899999999999999999999998765
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC----------
Q 043758 234 CEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN---------- 303 (918)
Q Consensus 234 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------- 303 (918)
..++..|..+.++|+.-....-+..+ +...+.+..+. ..-+++-...-|+.+....
T Consensus 278 -v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~e------------d~~dl~~~~a~~e~lm~rr~~~lNsVlLR 343 (835)
T KOG2047|consen 278 -VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEE------------DDVDLELHMARFESLMNRRPLLLNSVLLR 343 (835)
T ss_pred -heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChh------------hhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence 34566777777777643221111111 10001111111 0112222233333333221
Q ss_pred -CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhH
Q 043758 304 -LAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARS 382 (918)
Q Consensus 304 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (918)
-+.++..|..-+.. ..|+..+....|.+..+. +.|...
T Consensus 344 Qn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka-------------------------------------- 382 (835)
T KOG2047|consen 344 QNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKA-------------------------------------- 382 (835)
T ss_pred cCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccC--------------------------------------
Confidence 13344444433332 245555666666555543 222211
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 043758 383 ISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVG 462 (918)
Q Consensus 383 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 462 (918)
+......|..+.+.|-..|+++.|..+|++..+-.. .+...|...++.-+
T Consensus 383 --------------------------~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y----~~v~dLa~vw~~wa 432 (835)
T KOG2047|consen 383 --------------------------VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY----KTVEDLAEVWCAWA 432 (835)
T ss_pred --------------------------CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc----cchHHHHHHHHHHH
Confidence 001114567777788888888888888887765332 22222233332222
Q ss_pred ChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcC-----------------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 043758 463 FLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRG-----------------PKPSVAIYDAIIGHLCKEKRILEAE 525 (918)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~a~ 525 (918)
+.+ .+..+++.|+.+++.....- +..+..+|...++..-..|-++...
T Consensus 433 emE---------------lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 433 EME---------------LRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred HHH---------------HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 111 12233444444444333210 0114455666666666667777777
Q ss_pred HHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCc-hhHHHHHHHHHh---cCChhHHHHHHHHH
Q 043758 526 DMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGS-YPYTALISGLVK---KGMVDLGCMYLDRM 601 (918)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~ 601 (918)
.+|+++.+..+. ++.........+-.+.-++++.+++++-+..-..|+. ..|+..+..+.+ ...++.|..+|++.
T Consensus 498 ~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 498 AVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 777777765432 2222222222233445566777777665543223333 345555444433 23467777777777
Q ss_pred HhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHH
Q 043758 602 LADGFVPNVV--LYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEML 679 (918)
Q Consensus 602 ~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (918)
++ |.+|... .|-.....=.+.|-...|+.++++... ++.+..
T Consensus 577 L~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~---------------------------------- 620 (835)
T KOG2047|consen 577 LD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQ---------------------------------- 620 (835)
T ss_pred Hh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHH----------------------------------
Confidence 76 4443322 122222222344555666666666432 111110
Q ss_pred HHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc
Q 043758 680 FHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN 759 (918)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 759 (918)
....||..|.--+..=-+..-..+|++.++. -||
T Consensus 621 --------------------------------------------~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~ 654 (835)
T KOG2047|consen 621 --------------------------------------------RLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPD 654 (835)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CCh
Confidence 1134444443333332344445566666663 455
Q ss_pred HHhHHHH---HHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChh
Q 043758 760 QVTFCIL---INGHIAAGEIDQAIGLFNQMNAD-GCVPDKTVYNTLLKGLCQAGRLS 812 (918)
Q Consensus 760 ~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~ 812 (918)
...-... ...-.+.|.++.|..++.--.+- ....+...|..-=.--.+.|+-+
T Consensus 655 ~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 655 SKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 5433222 23345789999999988877665 33335667777666677888833
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-09 Score=113.63 Aligned_cols=398 Identities=12% Similarity=0.027 Sum_probs=236.1
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHH-HHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLI-KCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDI 492 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~ 492 (918)
..|..+...+...|.-..|+.+++......-.|+..+...++ ..|.. +.+.++++++.
T Consensus 358 e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e---------------------~l~~~eegldY 416 (799)
T KOG4162|consen 358 ERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIE---------------------RLKLVEEGLDY 416 (799)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHh---------------------chhhhhhHHHH
Confidence 557777778888888888888888766543234433333333 33322 22344444444
Q ss_pred HHHHHHc--C--CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChH
Q 043758 493 LDQMEVR--G--PKPSVAIYDAIIGHLCKE-----------KRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPI 557 (918)
Q Consensus 493 ~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 557 (918)
-.++... + -......|-.+.-+|... ....++++.+++..+.+ +.|+.....+.--|+..++.+
T Consensus 417 A~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~ 495 (799)
T KOG4162|consen 417 AQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLT 495 (799)
T ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHH
Confidence 4444431 1 111334444444444432 12456677777777654 223333333344566677888
Q ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043758 558 EACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMV 637 (918)
Q Consensus 558 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 637 (918)
.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+...+. +..|......-+..-...++.+++..+...+.
T Consensus 496 sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 496 SALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKL 574 (799)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHH
Confidence 88888888887754566777777777778888888888888877664 12232222333333344677777776666554
Q ss_pred HCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHH
Q 043758 638 TNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVK 717 (918)
Q Consensus 638 ~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~ 717 (918)
.. +-.. . .....++-....+....+.
T Consensus 575 ~~---------------we~~-------------------------~--------------~~q~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 575 AL---------------WEAE-------------------------Y--------------GVQQTLDEGKLLRLKAGLH 600 (799)
T ss_pred HH---------------HHhh-------------------------h--------------hHhhhhhhhhhhhhhcccc
Confidence 20 0000 0 0000011111111111111
Q ss_pred h--cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH--------hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 718 D--IEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV--------TFCILINGHIAAGEIDQAIGLFNQMN 787 (918)
Q Consensus 718 ~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--------~~~~li~~~~~~g~~~~A~~~~~~~~ 787 (918)
- ......+.++..+..... -+.+.+..-.. +....+.|... .|......+.+.++.++|...+.+..
T Consensus 601 la~~q~~~a~s~sr~ls~l~a--~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVA--SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS 677 (799)
T ss_pred cCcccccccchhhHHHHHHHH--hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 0 011112233333332222 11111110000 22222233222 34455567788899999998888777
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChhhHHH--HHHHHHhCCCCCC
Q 043758 788 ADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKK-ATYEHLLECFCANCLSIPAFN--MFKEMIVHDHVPC 864 (918)
Q Consensus 788 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~~~~~ 864 (918)
.. .......|......+...|.+++|.+.|..... +.|+. ....++..++.+.|+..-|.. ++..+.+.+ |.+
T Consensus 678 ~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n 753 (799)
T KOG4162|consen 678 KI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLN 753 (799)
T ss_pred hc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCC
Confidence 64 333557777777888899999999999998875 66755 478888889999998888877 999999998 999
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 865 LSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 865 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
+++|+.++.++.+.|+.++|.+.|....+..
T Consensus 754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 754 HEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9999999999999999999999999887764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-10 Score=108.56 Aligned_cols=456 Identities=13% Similarity=0.045 Sum_probs=247.0
Q ss_pred HHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCc
Q 043758 104 LRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIR 183 (918)
Q Consensus 104 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 183 (918)
+.-+....++..|+.+++.-...+-.....+-..+...+.+.|++++|...+.-+.. .-.++...+..|..++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~--~~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN--KDDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc--cCCCCcccchhHHHHHHHHHH
Confidence 445555667777777776655433222212223334445566777777777766654 234445555555555555566
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 043758 184 TVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQ 263 (918)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 263 (918)
+.+|..+.....+ ++..-..|.....+.|+-++-..+-+.+... ...-.+|.+.....-.+.+|++++..
T Consensus 107 Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6666665443322 2333334444444555555555444443321 11222233333333356666666666
Q ss_pred HHhCCCCccHhhHHH-HHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 043758 264 MSDWGFQPNMVTDLI-MISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPD 342 (918)
Q Consensus 264 ~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 342 (918)
++..+ |+-...|. +.-+|.+..-++-+.+++.--.+.- +.++.+.|.......+.=+-..|.+-.+.+...+-..
T Consensus 177 vL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 177 VLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred HHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 65442 22222222 2233455555566666655544432 3334444544444444333333333333333321100
Q ss_pred hhhHHH-HHh-hCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHH
Q 043758 343 HLLSFI-LLK-NCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYI 420 (918)
Q Consensus 343 ~~~~~~-ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 420 (918)
+.+.. +++ .+.--.. .+.|.+++-.+...-| .+...++
T Consensus 253 -~~f~~~l~rHNLVvFrn-----------------------------------gEgALqVLP~L~~~IP----EARlNL~ 292 (557)
T KOG3785|consen 253 -YPFIEYLCRHNLVVFRN-----------------------------------GEGALQVLPSLMKHIP----EARLNLI 292 (557)
T ss_pred -chhHHHHHHcCeEEEeC-----------------------------------CccHHHhchHHHhhCh----Hhhhhhe
Confidence 00100 000 0000011 2445555555554444 5566778
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcC
Q 043758 421 SALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRG 500 (918)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 500 (918)
-.|.++++..+|..+.+++. +.++.-|..-.-.++..|+--. ......-|.+.|.-.-+.+
T Consensus 293 iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~g---------------SreHlKiAqqffqlVG~Sa 353 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETG---------------SREHLKIAQQFFQLVGESA 353 (557)
T ss_pred eeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcC---------------cHHHHHHHHHHHHHhcccc
Confidence 88999999999999988763 2222222222222344443221 2224455666666665555
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhH-
Q 043758 501 PKPSVA-IYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPY- 578 (918)
Q Consensus 501 ~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~- 578 (918)
...|+. --.++.+++.-..++++.+..++.+...= ..|...--.+.++++..|++.+|+++|-.+....++ |..+|
T Consensus 354 ~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~ 431 (557)
T KOG3785|consen 354 LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYK 431 (557)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHH
Confidence 544433 23455666666778999999999888753 233333345778999999999999999888765444 44555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043758 579 TALISGLVKKGMVDLGCMYLDRMLADGFVPNV-VLYTALINHFLRAGEFEFASRLENLMVTN 639 (918)
Q Consensus 579 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 639 (918)
..|.++|.+.++++.|+.++-.+.. +.+. .....+.+-|.+++++--|.+.|+.+...
T Consensus 432 s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 432 SMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 4566788999999999887755432 2233 34455667789999998888888888753
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.7e-08 Score=99.77 Aligned_cols=180 Identities=8% Similarity=-0.038 Sum_probs=126.9
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 043758 133 WSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLING 212 (918)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 212 (918)
..|-..+..+..+|++..-+..|+......+..-....|...+...-..+-++-+.+++++..+. ++..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 46777778888899999999999988764444445567777787777888888999999999887 66667778888
Q ss_pred HhcCCChHHHHHHHHHHHhcC------CCCChhhHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCcc--HhhHHHHHH
Q 043758 213 YCSNRNMKMAMRLFFRMLKTG------CEPDSYTCNTLIHGFFKMGLFD---KGWVLYSQMSDWGFQPN--MVTDLIMIS 281 (918)
Q Consensus 213 ~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~--~~~~~~l~~ 281 (918)
++..+++++|-+.+...+... .+.+-..|..+....+++.+.- ....+++.+..+ -+| ...|++|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 888999999988888776321 1233345666666555544332 234555655543 334 457888999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh
Q 043758 282 NYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK 320 (918)
Q Consensus 282 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 320 (918)
.|.+.|.+++|..+|++..+.- .++.-|+.+.++|++
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHH
Confidence 9999999999999998877542 344455666666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-08 Score=109.73 Aligned_cols=678 Identities=11% Similarity=-0.020 Sum_probs=367.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.-+.+...|...|-+.++.++. =..+|..+...|+.-.+...|...|+++.+.+ ..+..........|++..+++.|.
T Consensus 469 ~~rK~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 469 CMRKNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred HhhhhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHH
Confidence 5555688899999888887744 23488889999988889999999999999887 668888999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
.+.-...++.....-...|..+.-.|.+.++..++..-|+...+..+. |...|..+..+|...|.+..|+++|.+....
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 985444331111111222333444577889999999999999988666 8889999999999999999999999998765
Q ss_pred CCCCChhhHHHHH--HHHHhcCChhHHHHHHHHHHhCC------CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhh---
Q 043758 233 GCEPDSYTCNTLI--HGFFKMGLFDKGWVLYSQMSDWG------FQPNMVTDLIMISNYCREGEVDAALMLLNSKVS--- 301 (918)
Q Consensus 233 ~~~p~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 301 (918)
.|+. +|...- ...+..|.+.++...++.....- ...-..++..+...+...|=..+|..+++..++
T Consensus 626 --rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 626 --RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred --CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4543 333322 23457899999998888775431 111122333333333333444444444443332
Q ss_pred ----CCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCC
Q 043758 302 ----SNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGID 377 (918)
Q Consensus 302 ----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 377 (918)
.....+...|-.+. .|..+|-... .. .|+......+..-....+ ...+
T Consensus 703 ~~l~h~~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~----------------~l~~ 754 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTG----------------ALKK 754 (1238)
T ss_pred HHHHHhhhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcc----------------cCcc
Confidence 21112222232222 2333333332 11 233222222222111111 1111
Q ss_pred hhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHc--------cCChHHHHHHHHHHHHCCCCCCcc
Q 043758 378 PLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCK--------GGKYEKAYVCLFQLVNFGYRPLVF 449 (918)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~ 449 (918)
..+..+...+. ...+.-+. ....|..++..|.+ ..+...|+..++..++.. .-+..
T Consensus 755 ~d~l~Lg~~c~---------~~hlsl~~------~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~ 818 (1238)
T KOG1127|consen 755 NDLLFLGYECG---------IAHLSLAI------HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEG 818 (1238)
T ss_pred hhHHHHHHHHh---------hHHHHHhh------ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHH
Confidence 11000000000 00000000 01334444333332 123346777777766542 22334
Q ss_pred cHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043758 450 TCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFK 529 (918)
Q Consensus 450 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 529 (918)
+|+.+- ..... |++.-+...|-+.....+ .+..+|..+...+.+..+++-|...|.
T Consensus 819 ~WnaLG-Vlsg~----------------------gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 819 LWNALG-VLSGI----------------------GNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLENQDFEHAEPAFS 874 (1238)
T ss_pred HHHHHH-Hhhcc----------------------chhhhhhhhhhhhhhccc-cchhheeccceeEEecccHHHhhHHHH
Confidence 444443 33322 355555556655555433 366778878878888889999999998
Q ss_pred HHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH----hCCCCCCchhHHHHHHHHHhcCChhHHHH---------
Q 043758 530 RMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMK----ENSVQPGSYPYTALISGLVKKGMVDLGCM--------- 596 (918)
Q Consensus 530 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--------- 596 (918)
..+... +.+...|-.....--..|+.-++..+|..-- ..|--|+..-+-....-....|+.++-+.
T Consensus 875 ~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 875 SVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred hhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 887653 3455556555545556677777777776622 12223333333333333334444443332
Q ss_pred -HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCccHHHHHHHHHHHhhhcccccccccccccchh
Q 043758 597 -YLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTN-QIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDS 674 (918)
Q Consensus 597 -~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 674 (918)
.++.... +.+.+...|.+......+.+.+..|.....+.+.- ..+-|..+|+....
T Consensus 954 ~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~--------------------- 1011 (1238)
T KOG1127|consen 954 LALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP--------------------- 1011 (1238)
T ss_pred HHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh---------------------
Confidence 2223322 33556667777777777777777777777665420 01122223332222
Q ss_pred hhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH--HccCChhHHHHHHHHHH
Q 043758 675 GKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLL--CGVGRMDDAYDHFQMMK 752 (918)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~ 752 (918)
.....++..|.++.|...+... +-..--.++.... .-.++++++.+.|++..
T Consensus 1012 --------------------~~gRL~lslgefe~A~~a~~~~------~~evdEdi~gt~l~lFfkndf~~sl~~fe~aL 1065 (1238)
T KOG1127|consen 1012 --------------------DAGRLELSLGEFESAKKASWKE------WMEVDEDIRGTDLTLFFKNDFFSSLEFFEQAL 1065 (1238)
T ss_pred --------------------hhhhhhhhhcchhhHhhhhccc------chhHHHHHhhhhHHHHHHhHHHHHHHHHHHHh
Confidence 2223344456666554433221 1111001111111 22478888888888876
Q ss_pred Hc-CCCCcH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CC
Q 043758 753 RE-GLRPNQ-VTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKR----GF 826 (918)
Q Consensus 753 ~~-~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~ 826 (918)
.. +-..+. +....++.+....+.-+.|...+-+.... -+|+..+.-.+--.+.-..+-.....+++++.+. .+
T Consensus 1066 sis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~ 1144 (1238)
T KOG1127|consen 1066 SISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWF 1144 (1238)
T ss_pred hhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHh
Confidence 53 112222 24455555666777888888766666554 2344444444433333333333333334444321 01
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 043758 827 VPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQ 877 (918)
Q Consensus 827 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 877 (918)
.-+......+ -+.++|+-....+.+++..-.. |.|+..|..|..-|..
T Consensus 1145 ~~~~~ll~e~--i~~~~~r~~~vk~~~qr~~h~~-P~~~~~WslL~vrya~ 1192 (1238)
T KOG1127|consen 1145 CWPPGLLKEL--IYALQGRSVAVKKQIQRAVHSN-PGDPALWSLLSVRYAQ 1192 (1238)
T ss_pred ccChhHHHHH--HHHHhhhhHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 1112222222 2466777777778888877665 8888888888765553
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-10 Score=106.17 Aligned_cols=158 Identities=11% Similarity=0.066 Sum_probs=102.2
Q ss_pred ChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHH
Q 043758 705 KKGTVQKIVLKVKDIEFMPN-LYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLF 783 (918)
Q Consensus 705 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 783 (918)
.+.-|++.|+.+.+.+..-| +..-.++..++.-..++++++.+++.+..-=..-|...+| +..+++..|++.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHH
Confidence 34456666666665555444 3455666666666778888888888887753444444444 677888889999999988
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHccCChhhHHHHHHHHHhCCCC
Q 043758 784 NQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEH-LLECFCANCLSIPAFNMFKEMIVHDHV 862 (918)
Q Consensus 784 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~ 862 (918)
-.+....++-+......+.++|.++++.+-|..++-.+- -+.+..++-. +..-|.+.+.+--|.+.+..+...+
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD-- 491 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD-- 491 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--
Confidence 777654444333333456678888888888887776552 2223334333 4457788888888888888776654
Q ss_pred CCcccH
Q 043758 863 PCLSNC 868 (918)
Q Consensus 863 ~~~~~~ 868 (918)
|+++.|
T Consensus 492 P~pEnW 497 (557)
T KOG3785|consen 492 PTPENW 497 (557)
T ss_pred CCcccc
Confidence 444433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-14 Score=143.11 Aligned_cols=258 Identities=17% Similarity=0.109 Sum_probs=100.2
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCC
Q 043758 69 QNDFVALGNIEDALRHFDRLISKN-IVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGF 147 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 147 (918)
..++.+.|++++|+++++...... +..++..|..+.......+++++|+..|+++...+ +.+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 566677788888888886554443 23355566566666667788888888888887765 3355666666666 57888
Q ss_pred hhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhcCCChHHHHHHH
Q 043758 148 LDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQG-FYVDKLMYTSLINGYCSNRNMKMAMRLF 226 (918)
Q Consensus 148 ~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 226 (918)
+++|.++++...+ ..++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|+..+
T Consensus 93 ~~~A~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYE---RDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccc---cccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888877655 12455566667777778888888888888876532 2346667778888888888888888888
Q ss_pred HHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 043758 227 FRMLKTGCEPD-SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLA 305 (918)
Q Consensus 227 ~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 305 (918)
++..+. .|+ ....+.++..+...|+.+++.++++...+.. +.|+..+..+..+|...|+.++|..+|+.....+ +
T Consensus 170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 888876 454 5567777777888888888888887776654 5566677778888888888888888888877755 4
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 306 PSVHCYTVLIDALYKHNRLMEVDELYKKML 335 (918)
Q Consensus 306 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (918)
.|......+..++...|+.++|.++.++..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 566667777888888888888888877654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-14 Score=144.24 Aligned_cols=167 Identities=13% Similarity=0.037 Sum_probs=103.0
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHcC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 043758 723 PNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREG-LRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNT 800 (918)
Q Consensus 723 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 800 (918)
+++..+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|++.+++.++. .| |......
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~ 185 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNA 185 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHH
Confidence 345556667777777888888888888876432 2445667777777888888888888888888874 45 4677778
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 043758 801 LLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKH 880 (918)
Q Consensus 801 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (918)
++..+...|+.+++.++++...+.. +.++..+..+..++...|++++|+..+++..... |.|+.....++.++...|+
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGR 263 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccc
Confidence 8888888888888888888777542 4455677778888888888888988888888766 7788888899999999999
Q ss_pred HHHHHHHHHHHHh
Q 043758 881 FHEAQIVLDVMHK 893 (918)
Q Consensus 881 ~~~A~~~~~~~~~ 893 (918)
.++|.+++.++.+
T Consensus 264 ~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 264 KDEALRLRRQALR 276 (280)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 9999888877644
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-08 Score=101.90 Aligned_cols=194 Identities=15% Similarity=0.096 Sum_probs=125.8
Q ss_pred HHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccC
Q 043758 103 ILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNI 182 (918)
Q Consensus 103 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 182 (918)
.+.+-.....+..|+.+++.+.+..+ -...|..+..-|+..|+++.|.++|-+.- .++--+.+|.+.|
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccc
Confidence 34444556678888888887776542 33456677778888888888888876642 3455677788888
Q ss_pred chHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 043758 183 RTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYS 262 (918)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 262 (918)
+++.|.++-++... +......|-+-..-.-.+|++.+|.++|-.+. .|+. .|..|-+.|..+..+++.+
T Consensus 806 kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHH
Confidence 88888877666543 23345556666666677788888887775543 3443 3556777777777777666
Q ss_pred HHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 043758 263 QMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELY 331 (918)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 331 (918)
+-.-. .=..|...+..-|-..|++..|+..|-+.. -|.+-+..|-.++.+++|-++-
T Consensus 875 k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 875 KHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 54211 112345556666777788888877774433 2555666777777777666553
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.7e-12 Score=131.87 Aligned_cols=260 Identities=13% Similarity=-0.001 Sum_probs=177.1
Q ss_pred hhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChh
Q 043758 70 NDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLD 149 (918)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 149 (918)
++....|+++.|...|.++.+..+.+...........+...|++++|...++.+.+.. |.+..++..+...+.+.|+++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 3446667777777778887766544333344445777888899999999999988886 556678888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcccHH-HHHHHH---hccCchHHHHHHHHHHHhCCCC---CChhhHHHHHHHHhcCCChHHH
Q 043758 150 EVLEVVNIMRKKKGLVPALHPYK-SLFYAL---CKNIRTVEAESFAREMESQGFY---VDKLMYTSLINGYCSNRNMKMA 222 (918)
Q Consensus 150 ~A~~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 222 (918)
.|.+.++.+.+ .+.. +...+. ....++ ...+..++....+..+.+..+. .++..+..+...+...|+.++|
T Consensus 205 ~a~~~l~~l~k-~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 205 ALDDIIDNMAK-AGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 99999999987 4322 222221 111111 2222223333455555444221 2677888888899999999999
Q ss_pred HHHHHHHHhcCCCCChhhH-HHHHH--HHHhcCChhHHHHHHHHHHhCCCCccH--hhHHHHHHHHHhcCCHHHHHHHHH
Q 043758 223 MRLFFRMLKTGCEPDSYTC-NTLIH--GFFKMGLFDKGWVLYSQMSDWGFQPNM--VTDLIMISNYCREGEVDAALMLLN 297 (918)
Q Consensus 223 ~~~~~~m~~~~~~p~~~~~-~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~ 297 (918)
.+++++..+. .||.... ..++. .....++.+.+.+.++...+.. +.|+ ....++...+.+.|++++|.+.|+
T Consensus 283 ~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 283 QEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9999998876 3444321 01222 2234567777888888877663 3444 566688888899999999999999
Q ss_pred HHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 298 SKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKML 335 (918)
Q Consensus 298 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (918)
........|+...+..+...+.+.|+.++|.+++++..
T Consensus 360 ~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 360 NVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43332235788888888999999999999999988754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-11 Score=128.23 Aligned_cols=255 Identities=12% Similarity=0.040 Sum_probs=188.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.+.|+++.|.+.|.++.+..+.+...........+...|++++|...++++.+.. |-+...+..+...|.+.|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 6778888888888888876544332232344677888899999999999998876 567788888899999999999999
Q ss_pred HHHHHHHhcCCCCCCc------ccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHH
Q 043758 153 EVVNIMRKKKGLVPAL------HPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLF 226 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 226 (918)
+++..+.+.....+.. .+|..++.......+.+...++++.+.+.- +.++.....+...+...|+.++|..++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999998732222221 123333333334445566666666665432 237778888999999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 043758 227 FRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAP 306 (918)
Q Consensus 227 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 306 (918)
++..+. +|+... .++.+....++.+++.+..+...+.. +.|+..+..+...+.+.+++++|.+.|+...+. .|
T Consensus 287 ~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P 359 (398)
T PRK10747 287 LDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RP 359 (398)
T ss_pred HHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 888874 455422 22333445688889999998888764 556777888889999999999999999998876 48
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 307 SVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 307 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
+...+..+...+.+.|+.++|.+++++-..
T Consensus 360 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 360 DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888888899999999999999999987654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-10 Score=122.63 Aligned_cols=290 Identities=11% Similarity=0.046 Sum_probs=176.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCcHHH-HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHH--HHHHHHHhcCChhHH
Q 043758 518 EKRILEAEDMFKRMLKAGIDPDEVF-FTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYT--ALISGLVKKGMVDLG 594 (918)
Q Consensus 518 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a 594 (918)
.|+++.|++.+....+.. +++.. |.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 588998888887766542 22333 333344557889999999999998875 45554333 335667788999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchh
Q 043758 595 CMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDS 674 (918)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 674 (918)
...++.+.+.. +-++.....+...|.+.|++++|.+++..+.+.+..++...-..-..++...
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l---------------- 235 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL---------------- 235 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----------------
Confidence 99999988875 5567788888899999999999999999998776543221110000110000
Q ss_pred hhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 043758 675 GKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKRE 754 (918)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 754 (918)
........+.+...+.++.+.+ ..+.++.....+...+...|+.++|.+++++..+.
T Consensus 236 ----------------------~~~~~~~~~~~~l~~~w~~lp~-~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 236 ----------------------MDQAMADQGSEGLKRWWKNQSR-KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred ----------------------HHHHHHhcCHHHHHHHHHhCCH-HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 0000001223334444444331 12345566666667777777777777777666652
Q ss_pred CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 043758 755 GLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYE 834 (918)
Q Consensus 755 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 834 (918)
.||... .++.+....++.+++++..+.+.+. .+-|+..+..+...|.+.|++++|.+.|+...+ ..|+..++.
T Consensus 293 --~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~ 365 (398)
T PRK10747 293 --QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYA 365 (398)
T ss_pred --CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHH
Confidence 344321 1233333456677777776666654 112445566666667777777777777777664 456666666
Q ss_pred HHHHHHHccCChhhHHHHHHHHHh
Q 043758 835 HLLECFCANCLSIPAFNMFKEMIV 858 (918)
Q Consensus 835 ~l~~~~~~~~~~~~A~~~~~~~~~ 858 (918)
.+..++.+.|+.++|...+++.+.
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666776666666666543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-10 Score=110.07 Aligned_cols=352 Identities=13% Similarity=0.003 Sum_probs=244.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHH
Q 043758 500 GPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYT 579 (918)
Q Consensus 500 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 579 (918)
+...|...+-.....+.+.|..+.|++.|......- |-.=..|..+...+ .+.+. ...... +.+.|...+.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~----~~~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEI----LSILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHH----HHHHHh-cCcccchHHH
Confidence 444566666666667778899999999998887642 22323333333222 22222 222221 2233332222
Q ss_pred --HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CccHHHHHHHHHHH
Q 043758 580 --ALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQI--EFDLIAYIALVSGV 655 (918)
Q Consensus 580 --~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~ll~~~ 655 (918)
.+..++-.....+++..-.+.....|++.+...-+....+.....|+++|+.+|+++.++.. --|..+|..++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 23455666678888988888888889888877777777777888899999999999988632 12566666555432
Q ss_pred hhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChh-HHHHHHHHHHhcCCCCChhhHHHHHHH
Q 043758 656 CRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKG-TVQKIVLKVKDIEFMPNLYLYNDIFLL 734 (918)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~ 734 (918)
... .++. .|+.+++ -.+-.+.|...+.+.
T Consensus 310 ~~~---------------------------------------------skLs~LA~~v~~-----idKyR~ETCCiIaNY 339 (559)
T KOG1155|consen 310 NDK---------------------------------------------SKLSYLAQNVSN-----IDKYRPETCCIIANY 339 (559)
T ss_pred hhh---------------------------------------------HHHHHHHHHHHH-----hccCCccceeeehhH
Confidence 110 0000 1111111 113355677788888
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 043758 735 LCGVGRMDDAYDHFQMMKREGLRPNQV-TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSH 813 (918)
Q Consensus 735 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 813 (918)
|+-.++.++|+..|++.++ +.|... .|+.+..-|....+...|++-++.+++- .+.|-..|..+..+|.-.+...=
T Consensus 340 YSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~Y 416 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFY 416 (559)
T ss_pred HHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHH
Confidence 9989999999999999988 456544 5666777788999999999999999884 22367899999999999999999
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 814 VFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMH 892 (918)
Q Consensus 814 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 892 (918)
|+-+|++..+ ++| |...|.+|..+|.+.++.++|++-+++....+ ..+..++..|+..|.+.++.++|...+++-.
T Consensus 417 aLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 417 ALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999886 566 77789999999999999999999999999877 5577899999999999999999999988876
Q ss_pred hC----C-CCC-CcccchhhhcccccccCC
Q 043758 893 KR----G-RLP-CTSTRGFWRKHFIGKEKF 916 (918)
Q Consensus 893 ~~----~-~~~-~~~~~~~~~~~~~~~~~~ 916 (918)
+. | +.| .....-++.+++.+..++
T Consensus 494 ~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~ 523 (559)
T KOG1155|consen 494 EVSELEGEIDDETIKARLFLAEYFKKMKDF 523 (559)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHhhcch
Confidence 63 2 222 122344555665555443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-10 Score=114.80 Aligned_cols=184 Identities=16% Similarity=0.161 Sum_probs=146.3
Q ss_pred hCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH-HhHHHHHHHHHhcCCHHHHH
Q 043758 702 SNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQ-VTFCILINGHIAAGEIDQAI 780 (918)
Q Consensus 702 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~ 780 (918)
...+.++..+.|.+....+ +.++.+|....+.+.-.+++++|..-|++.++ +.|+. ..|.-+.-+..+.+.++++.
T Consensus 372 d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m 448 (606)
T KOG0547|consen 372 DENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESM 448 (606)
T ss_pred hhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665443 45778888888888888999999999999988 45654 46666666677899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-------HH--HHHHHHHHHHccCChhhHHH
Q 043758 781 GLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK-------KA--TYEHLLECFCANCLSIPAFN 851 (918)
Q Consensus 781 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~--~~~~l~~~~~~~~~~~~A~~ 851 (918)
..|++.+.. ++--+++|+.....+...+++++|.+.++...+ +.|+ .. +-..++- +...+++..|..
T Consensus 449 ~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~ 524 (606)
T KOG0547|consen 449 KTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAEN 524 (606)
T ss_pred HHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhh-hchhhhHHHHHH
Confidence 999999886 655679999999999999999999999999875 3443 22 2222332 345589999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 852 MFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 893 (918)
++.++++.+ |....++..|+....+.|+.++|.++|++...
T Consensus 525 Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 525 LLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999988 88888999999999999999999999998654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-09 Score=107.07 Aligned_cols=305 Identities=14% Similarity=0.053 Sum_probs=204.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCcHHHHHHHHHHHHcCCChHHHHHH
Q 043758 485 NLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGI--DPDEVFFTTMINGYLQNRKPIEACQL 562 (918)
Q Consensus 485 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 562 (918)
..+++..-.+.....|++.+...-+....+.-...+++.|+.+|+++.+... --|..+|+.++..-....+ +..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk----Ls~ 317 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK----LSY 317 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH----HHH
Confidence 4456666666666666666666666666666667777777777777776520 0144555555433222111 111
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 043758 563 FEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIE 642 (918)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 642 (918)
+.+-.-.--+-.+.|...+.+-|.-.++.++|..+|++..+.+ +.....|..+.+-|....+...|++-|++.++-
T Consensus 318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--- 393 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--- 393 (559)
T ss_pred HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc---
Confidence 1111110002233455566666777777777777777777664 345566777777777777777777777776531
Q ss_pred ccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCC
Q 043758 643 FDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFM 722 (918)
Q Consensus 643 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 722 (918)
.+
T Consensus 394 ------------------------------------------------------------------------------~p 395 (559)
T KOG1155|consen 394 ------------------------------------------------------------------------------NP 395 (559)
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 13
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043758 723 PNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRP-NQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTL 801 (918)
Q Consensus 723 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 801 (918)
.|-..|..|.++|.-.+.+.-|+-.|++... ++| |...|.+|..+|.+.++.++|+..|......|-. +...+..+
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~L 472 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRL 472 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHH
Confidence 4677899999999999999999999999988 455 5679999999999999999999999999886543 66888999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhC----CCCCCH--HHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 043758 802 LKGLCQAGRLSHVFSVFYSMHKR----GFVPKK--ATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNIL 875 (918)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (918)
.+.|-+.++.++|...+++.++. |...+. ....-|..-+.+.+++++|..........
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~---------------- 536 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG---------------- 536 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC----------------
Confidence 99999999999999998887642 322222 22222445677788888887766655432
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 043758 876 CQEKHFHEAQIVLDVMHKRGR 896 (918)
Q Consensus 876 ~~~g~~~~A~~~~~~~~~~~~ 896 (918)
....++|..++.++++..-
T Consensus 537 --~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 537 --ETECEEAKALLREIRKIQA 555 (559)
T ss_pred --CchHHHHHHHHHHHHHhcC
Confidence 2345788888888776543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.3e-11 Score=125.22 Aligned_cols=300 Identities=10% Similarity=-0.025 Sum_probs=217.9
Q ss_pred hHHhhhhhhh--HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcch--hHHHH
Q 043758 63 SALLLYQNDF--VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCW--SYNVL 138 (918)
Q Consensus 63 ~a~~~~~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l 138 (918)
.+.....+.+ ...|+++.|.+.+....+..+.| ...+-....+..+.|+++.|...+.++.+.. |+.. .....
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~ 159 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHH
Confidence 3444343333 88999999999999988765432 3344566777888899999999999987653 4432 33345
Q ss_pred HHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHH-HHHHHH---h
Q 043758 139 IDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYT-SLINGY---C 214 (918)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~---~ 214 (918)
...+...|+++.|.+.++.+.+ . .|-+......+..++.+.|++++|...+..+.+.+.. +...+. ....++ .
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~-~-~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLE-M-APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHH
Confidence 7888889999999999999987 2 2445567788889999999999999999999998765 433332 111222 3
Q ss_pred cCCChHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhh---HHHHHHHHHhcCC
Q 043758 215 SNRNMKMAMRLFFRMLKTGC---EPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVT---DLIMISNYCREGE 288 (918)
Q Consensus 215 ~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~ 288 (918)
..+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCC
Confidence 33344444456666555421 1266788888899999999999999999999874 33331 1222222344578
Q ss_pred HHHHHHHHHHHhhCCCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHH
Q 043758 289 VDAALMLLNSKVSSNLAPSV--HCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLL 366 (918)
Q Consensus 289 ~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 366 (918)
.+.+.+.++...+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+...|+.+.|.+++
T Consensus 315 ~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 315 NEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred hHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 889999998887764 3344 5567889999999999999999996555556788888888888999999999998888
Q ss_pred HHHHh
Q 043758 367 CEFAK 371 (918)
Q Consensus 367 ~~~~~ 371 (918)
++...
T Consensus 394 ~~~l~ 398 (409)
T TIGR00540 394 QDSLG 398 (409)
T ss_pred HHHHH
Confidence 76544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-08 Score=100.65 Aligned_cols=139 Identities=16% Similarity=0.034 Sum_probs=92.1
Q ss_pred HHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcch
Q 043758 54 KLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCW 133 (918)
Q Consensus 54 ~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 133 (918)
+|.+.+.+.+.+.+-+-.+...|+.++|....+..+..++. +.++|..+.-.+....++++|++.|..+...+ +.|..
T Consensus 33 iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~q 110 (700)
T KOG1156|consen 33 ILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQ 110 (700)
T ss_pred HHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHH
Confidence 33455555555555555566777777777777777776655 67788888877777888899999998888776 55666
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCC-CcccHHHHHHHHhccCchHHHHHHHHHHHhC
Q 043758 134 SYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVP-ALHPYKSLFYALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 197 (918)
.+.-+.-.-++.|+++.....-..+.+ ..| ....|.....++--.|++..|..++++..+.
T Consensus 111 ilrDlslLQ~QmRd~~~~~~tr~~LLq---l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 111 ILRDLSLLQIQMRDYEGYLETRNQLLQ---LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 776666666666777766666666554 222 2344555555555556666666666666554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-07 Score=100.60 Aligned_cols=148 Identities=11% Similarity=0.079 Sum_probs=80.3
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043758 724 NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLK 803 (918)
Q Consensus 724 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 803 (918)
++.-|..|...+...|.+..|...-.+. -+..+|.-+..+|...+.+.-| +|.-..+.....-+..++.
T Consensus 1219 ~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~ 1287 (1666)
T KOG0985|consen 1219 NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIE 1287 (1666)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHH
Confidence 3445666777777777777776654332 2445777777777766554333 2222223334455667777
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChhhHHHHHHHHH-hCCCCC------CcccHHHHHHHH
Q 043758 804 GLCQAGRLSHVFSVFYSMHKRGFVPKKA-TYEHLLECFCANCLSIPAFNMFKEMI-VHDHVP------CLSNCNWLLNIL 875 (918)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~------~~~~~~~l~~~~ 875 (918)
-|...|.+++-+.+++... |+.-... .+.-|. .++..=++++..+.++-.. +.++|. ....|.-|.-.|
T Consensus 1288 ~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELa-iLYskykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY 1364 (1666)
T KOG0985|consen 1288 YYQDRGYFEELISLLEAGL--GLERAHMGMFTELA-ILYSKYKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLY 1364 (1666)
T ss_pred HHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888877777654 3332222 222222 2333334444444444332 112111 134566677777
Q ss_pred HhcCCHHHHH
Q 043758 876 CQEKHFHEAQ 885 (918)
Q Consensus 876 ~~~g~~~~A~ 885 (918)
.+-..|+.|.
T Consensus 1365 ~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1365 DKYEEYDNAA 1374 (1666)
T ss_pred HhhhhhhHHH
Confidence 7766666664
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.7e-08 Score=99.62 Aligned_cols=231 Identities=11% Similarity=-0.020 Sum_probs=129.8
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHH
Q 043758 77 NIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVN 156 (918)
Q Consensus 77 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (918)
.+..-+...+.+++..+. ...+.....-.+...|+.++|.+....-.+.+ ..+...|..+.-.+....++++|++.|.
T Consensus 22 QYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 344444445555443222 22233333334566677777777776666554 3345566666666666677778888887
Q ss_pred HHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC-CC
Q 043758 157 IMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTG-CE 235 (918)
Q Consensus 157 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~ 235 (918)
.+.+ --+.|...+.-+.-.-++.++++.....-....+..+. ....|...+.++.-.|++..|..++++..+.. ..
T Consensus 100 nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 100 NALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 7765 12333445544444455667777766666666654332 45567777777777777777777777776543 23
Q ss_pred CChhhHHHHHH------HHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcc
Q 043758 236 PDSYTCNTLIH------GFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVH 309 (918)
Q Consensus 236 p~~~~~~~ll~------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 309 (918)
|+...|..... ...+.|.++.|.+.+..-... +......-..-...+.+.+++++|..++..+...+ ||..
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~ 253 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNL 253 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhH
Confidence 55554433322 234556666666555543322 11111122233455667777777777777777665 5555
Q ss_pred hHHHHH
Q 043758 310 CYTVLI 315 (918)
Q Consensus 310 ~~~~ll 315 (918)
.|+..+
T Consensus 254 ~Yy~~l 259 (700)
T KOG1156|consen 254 DYYEGL 259 (700)
T ss_pred HHHHHH
Confidence 544433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.7e-10 Score=109.69 Aligned_cols=221 Identities=13% Similarity=0.062 Sum_probs=116.0
Q ss_pred cCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHH
Q 043758 215 SNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALM 294 (918)
Q Consensus 215 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 294 (918)
-.|++-.|..-|+..+.....++ ..|.-+...|....+.++.+..|......+ +-++.+|..-.+++.-.++++.|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 34555555555555554422211 124444445555555555566665555544 3344455555555555555666665
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCC
Q 043758 295 LLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGC 374 (918)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 374 (918)
=|+...+.+ +-++..|-.+..+..+.++++++...|++.++. .+.-...|+.....+...++++.|.+.+........
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 555555543 334445555555555555566666666555543 222334445555555555555555555555544332
Q ss_pred CCC-----hhhhHHHh-hcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHH
Q 043758 375 GID-----PLARSISA-TLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLV 440 (918)
Q Consensus 375 ~~~-----~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 440 (918)
..+ +..+.-.+ +..........+..++++....+|..+ .+|..|...-.+.|+.++|+++|+...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce-~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE-QAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH-HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 211 00011011 111122345566666666666665443 677778888888888888888887765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-10 Score=107.34 Aligned_cols=230 Identities=13% Similarity=0.105 Sum_probs=174.7
Q ss_pred chhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC--cccHHHHHHHHhccCchHH
Q 043758 109 AEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA--LHPYKSLFYALCKNIRTVE 186 (918)
Q Consensus 109 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~ 186 (918)
-..+.+.|+++|-+|.+.. +-+..+.-.+...|.+.|..++|+++.+.+.+..+...+ ......|..-|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3467889999999998764 445556667888899999999999999999872222111 1233345566778899999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhcCChhHHHHHHH
Q 043758 187 AESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSY----TCNTLIHGFFKMGLFDKGWVLYS 262 (918)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~ 262 (918)
|+.+|..+.+.+.. -......|+..|-...+|++|++.-+++.+.+-.+... -|.-+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999885332 55677889999999999999999999888765444322 35556666667788999999999
Q ss_pred HHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043758 263 QMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAP 341 (918)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (918)
+..+.+ +-.+..-..+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+....+
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 988775 445566667788899999999999999999987643344567788899999999999999998887754333
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.7e-10 Score=102.98 Aligned_cols=290 Identities=17% Similarity=0.182 Sum_probs=197.9
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcc------hHHHHHHHHHhcCCh
Q 043758 251 MGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVH------CYTVLIDALYKHNRL 324 (918)
Q Consensus 251 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~g~~ 324 (918)
+++.++|.++|-+|.+.. +.+..+-.+|.+.|.+.|..|.|+++.+.+.+ .||.. +...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 356777777777777643 33445566777778888888888888877776 34432 234566777888888
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHH
Q 043758 325 MEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKI 404 (918)
Q Consensus 325 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 404 (918)
+.|+++|..+...+..
T Consensus 124 DRAE~~f~~L~de~ef---------------------------------------------------------------- 139 (389)
T COG2956 124 DRAEDIFNQLVDEGEF---------------------------------------------------------------- 139 (389)
T ss_pred hHHHHHHHHHhcchhh----------------------------------------------------------------
Confidence 8888888887654311
Q ss_pred HhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccC
Q 043758 405 VKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWG 484 (918)
Q Consensus 405 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 484 (918)
-..+...++..|....+|++|+++-+++.+.+-.+...- +...||...+. +....
T Consensus 140 -------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---IAqfyCELAq~---------------~~~~~ 194 (389)
T COG2956 140 -------AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---IAQFYCELAQQ---------------ALASS 194 (389)
T ss_pred -------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---HHHHHHHHHHH---------------Hhhhh
Confidence 014456778888888899999988888887653333221 12223322211 12335
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHH
Q 043758 485 NLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFE 564 (918)
Q Consensus 485 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 564 (918)
+++.|...+.+..+.+++ .+.+--.+.+.....|+++.|.+.++.+.+.+..--..+...+..+|...|++++....+.
T Consensus 195 ~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 195 DVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 777888888888877554 5566666778889999999999999999987533345677888889999999999999999
Q ss_pred HHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 043758 565 KMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRA---GEFEFASRLENLMVT 638 (918)
Q Consensus 565 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 638 (918)
.+.+.. ++...-..+........-.+.|..++.+-+.. .|+...+..+++....- |...+...+++.|+.
T Consensus 274 ~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 274 RAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 998873 44444444544444555567777766666655 78999999999876543 345566666777764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-09 Score=105.21 Aligned_cols=293 Identities=12% Similarity=0.069 Sum_probs=197.6
Q ss_pred cCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHH
Q 043758 215 SNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALM 294 (918)
Q Consensus 215 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 294 (918)
..|+|..|+++..+-.+.+-. ....|..-..+.-..|+.+.+-+++.+..+..-.++.....+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 378888888888887765433 2345666666777888889898888888876335566667777778888889888888
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-------hHHHHHhhCCCCccHHHHHHHHH
Q 043758 295 LLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHL-------LSFILLKNCPEGTELQHALMLLC 367 (918)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~ 367 (918)
-+..+...+ +.+........++|.+.|++.....++..|.+.++-.|.. ++..+++-+...++.+.-...+.
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 888887766 5667788888899999999999999999988887655432 34444443333222222111111
Q ss_pred HHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC
Q 043758 368 EFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPL 447 (918)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 447 (918)
..+.. ...++..-..++.-+...|+.++|.++.++..+.+..|+
T Consensus 254 -----------------------------------~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 254 -----------------------------------NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred -----------------------------------hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 11110 011123445667777888888888888888887765555
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043758 448 VFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDM 527 (918)
Q Consensus 448 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 527 (918)
...++.. .+.++.+.-++..++.....+ -++..+.+|...|.+.+.+.+|.+.
T Consensus 298 ---L~~~~~~-----------------------l~~~d~~~l~k~~e~~l~~h~-~~p~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 298 ---LCRLIPR-----------------------LRPGDPEPLIKAAEKWLKQHP-EDPLLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred ---HHHHHhh-----------------------cCCCCchHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhHHHHHHHH
Confidence 3333322 233455555555655555533 2567778888888888888888888
Q ss_pred HHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 043758 528 FKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPG 574 (918)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 574 (918)
|+...+. .|+..+|+.+.+++.+.|++.+|.++.++....-.+|+
T Consensus 351 leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 351 LEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 8877765 67888888888888888888888888877664433443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-10 Score=117.83 Aligned_cols=219 Identities=15% Similarity=0.147 Sum_probs=158.6
Q ss_pred hcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCC-CcccHHHHHHHHhccCchHHHHH
Q 043758 111 EKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVP-ALHPYKSLFYALCKNIRTVEAES 189 (918)
Q Consensus 111 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~ 189 (918)
-+.++|+..|..+.... .-..++...+..+|...+++++|.++|+.+.+..+... +...|.+.+--+.+ .-+--.
T Consensus 333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHH
Confidence 46788888888855443 33446777788889899999999999999877433332 35566666543221 112222
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 190 FAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEP-DSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWG 268 (918)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 268 (918)
+-+.+.+.... .+.+|.++...|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 23344444332 6789999999999999999999999998876 44 56788888888888889999999999887542
Q ss_pred CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 269 FQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANR 338 (918)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (918)
+.+-..|..+...|.+.++++.|+-.|+...+.+ |.+.+....+...+-+.|+.++|+++|++.....
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 2233355567778899999999999999888877 5566667777788888899999999999887643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-09 Score=101.13 Aligned_cols=286 Identities=12% Similarity=0.064 Sum_probs=181.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHH
Q 043758 518 EKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMY 597 (918)
Q Consensus 518 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 597 (918)
.|++..|+++..+..+.+ ......|..-..+-...|+.+.+-.++.+..+.--.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477778877777766665 2234445555566667777788877777777652233444455555667777778888777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHH-------HHHHHHHHhhhcccccccccccc
Q 043758 598 LDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIA-------YIALVSGVCRRITGRKKWLDVNR 670 (918)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-------~~~ll~~~~~~~~~~~~~~~~~~ 670 (918)
..++.+.+ +-++........+|.+.|++.....+...+.+.+.-.+... |..+++-...
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~------------- 241 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD------------- 241 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc-------------
Confidence 77777765 44667777777888888888888888888877765444332 2222222111
Q ss_pred cchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 043758 671 CSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQM 750 (918)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 750 (918)
.+..+.....|+... ...+.++..-.+++.-+.++|+.++|.++..+
T Consensus 242 --------------------------------~~~~~gL~~~W~~~p-r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~ 288 (400)
T COG3071 242 --------------------------------DNGSEGLKTWWKNQP-RKLRNDPELVVAYAERLIRLGDHDEAQEIIED 288 (400)
T ss_pred --------------------------------cccchHHHHHHHhcc-HHhhcChhHHHHHHHHHHHcCChHHHHHHHHH
Confidence 111112222333322 22244566666777777788888888888777
Q ss_pred HHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 043758 751 MKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNAD-GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK 829 (918)
Q Consensus 751 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 829 (918)
..+.+..|+ . .....+.+-++...-++..++.... +. ++..+..|...|.+.+.|.+|.+.|+...+ ..|+
T Consensus 289 ~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s 360 (400)
T COG3071 289 ALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPS 360 (400)
T ss_pred HHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCC
Confidence 777665554 1 1222455666777777766666654 33 336667777777888888888888876664 5677
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHhC
Q 043758 830 KATYEHLLECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 830 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
..+|.-+..++-+.|++.+|....++.+..
T Consensus 361 ~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 361 ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 777777777777777777777777776543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-10 Score=118.59 Aligned_cols=285 Identities=13% Similarity=0.051 Sum_probs=161.3
Q ss_pred chHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHH
Q 043758 183 RTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTG--CEPDSYTCNTLIHGFFKMGLFDKGWVL 260 (918)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~ 260 (918)
+..+|...|+.+.+.-.. +......+..+|...+++++|..+|+...+.. ..-+...|.+.+-.+-+ .+ +...
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~--~v--~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD--EV--ALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh--hH--HHHH
Confidence 345666666665544221 33444556677777777777777777776542 11234456665533321 11 1112
Q ss_pred H-HHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043758 261 Y-SQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRV 339 (918)
Q Consensus 261 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 339 (918)
+ +.+.+.. +..+.+|.++...|.-.++.+.|++.|++..+.+ +....+|+.+..-++....++.|...|+..+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--- 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG--- 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc---
Confidence 2 2222222 4456677777777777777777777777777654 33566666666667777777777777766632
Q ss_pred CCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHH
Q 043758 340 APDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIY 419 (918)
Q Consensus 340 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 419 (918)
.|...| .+|--+
T Consensus 484 -~~~rhY-------------------------------------------------------------------nAwYGl 495 (638)
T KOG1126|consen 484 -VDPRHY-------------------------------------------------------------------NAWYGL 495 (638)
T ss_pred -CCchhh-------------------------------------------------------------------HHHHhh
Confidence 333333 334455
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHc
Q 043758 420 ISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVR 499 (918)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 499 (918)
.-.|.++++++.|+..|+...+-+ +.+.+....+...+. +.|+.++|+++++++...
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~----------------------~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQH----------------------QLKRKDKALQLYEKAIHL 552 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHH----------------------HhhhhhHHHHHHHHHHhc
Confidence 566777777777777777776543 223333333333332 234555566666666555
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 043758 500 GPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENS 570 (918)
Q Consensus 500 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 570 (918)
++. |+..---.+..+...+++++|+..++++.+. ++-+...+..+...|.+.|+.+.|+.-|.-+...+
T Consensus 553 d~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 553 DPK-NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred CCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 444 4433334455556666777777777776664 13334555666666767777777766666666553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-08 Score=100.73 Aligned_cols=99 Identities=11% Similarity=0.063 Sum_probs=68.1
Q ss_pred CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 043758 537 DPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTAL 616 (918)
Q Consensus 537 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 616 (918)
.-++.......+-|...+++.+..++++.+.+.. ++....+..-|.++.+.|+..+-..+=.++++. .+..+.+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3445555555666667778888888888777654 455555655566777777777766666677665 35566778777
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 043758 617 INHFLRAGEFEFASRLENLMV 637 (918)
Q Consensus 617 ~~~~~~~g~~~~a~~~~~~~~ 637 (918)
..-|.-.|...+|.+.|.+..
T Consensus 319 g~YYl~i~k~seARry~SKat 339 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKAT 339 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHh
Confidence 777777788888888777765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.1e-08 Score=98.35 Aligned_cols=518 Identities=11% Similarity=-0.003 Sum_probs=302.5
Q ss_pred cchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 043758 131 NCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLI 210 (918)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 210 (918)
+..-+..+.+-+....++..|+-+-+++.. .+..|+... .+..++.-.|.++.|..+...-.-. ..|..+.....
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~-l~~dp~d~~--~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~ 89 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAG-LTNDPADIY--WLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAA 89 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-ccCChHHHH--HHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHH
Confidence 334455666666667777888888787765 344444433 3666677777788877766653221 11667777777
Q ss_pred HHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHH
Q 043758 211 NGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVD 290 (918)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 290 (918)
..+.+..+++.|+.++.+-.. ..+...|..--. +..-..+.+. ++... ......+-.-...|....+.+
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~~~--~~essic~lRgk~y~al~n~~ 158 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDLMI--NLESSICYLRGKVYVALDNRE 158 (611)
T ss_pred HHHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----ccccc--cchhceeeeeeehhhhhccHH
Confidence 777788888888887763211 001111100000 0000011111 00000 111111111223455566677
Q ss_pred HHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHH
Q 043758 291 AALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFA 370 (918)
Q Consensus 291 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 370 (918)
+|...|.+... .|+..+.++...... ..-.+.+.+..+.... ..+. ...+.+..+.++....
T Consensus 159 ~ar~~Y~~Al~----~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~----~a~~--------~~ed~e~l~~lyel~~ 220 (611)
T KOG1173|consen 159 EARDKYKEALL----ADAKCFEAFEKLVSA--HMLTAQEEFELLESLD----LAML--------TKEDVERLEILYELKL 220 (611)
T ss_pred HHHHHHHHHHh----cchhhHHHHHHHHHH--HhcchhHHHHHHhccc----HHhh--------hhhHHHHHHHHHHhhh
Confidence 77777777664 334444333221111 1111111121111100 0000 0000111111111000
Q ss_pred hcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCccc
Q 043758 371 KIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFT 450 (918)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 450 (918)
......... ..-.+..-.+..-+......-.+-+...+++.+...+++.+.+.. ++....
T Consensus 221 ~k~~n~~~~-------------------~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~ 280 (611)
T KOG1173|consen 221 CKNRNEESL-------------------TRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPC 280 (611)
T ss_pred hhhcccccc-------------------ccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcch
Confidence 000000000 000000000111222444555667778899999999999998764 566666
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 451 CNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKR 530 (918)
Q Consensus 451 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 530 (918)
+..-|.++...|+. .+-..+-.++++. .+....+|-++.-.|...|+.++|.+.|.+
T Consensus 281 ~~~~ia~l~el~~~----------------------n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SK 337 (611)
T KOG1173|consen 281 LPLHIACLYELGKS----------------------NKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSK 337 (611)
T ss_pred HHHHHHHHHHhccc----------------------chHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHH
Confidence 76777777666543 3333444555555 344788899999999999999999999999
Q ss_pred HHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 043758 531 MLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNV 610 (918)
Q Consensus 531 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 610 (918)
..... +.-...|-.+.+.|+-.+..++|+..+...-+. ++-....+--+.--|.+.++.+.|.++|....... +.|+
T Consensus 338 at~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dp 414 (611)
T KOG1173|consen 338 ATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDP 414 (611)
T ss_pred HhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcc
Confidence 87653 223467889999999999999999999887764 11122223334445788999999999999988753 5678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccc
Q 043758 611 VLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVT 690 (918)
Q Consensus 611 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (918)
.+.+-+.-.....+.+.+|...|+..+.. +..
T Consensus 415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~------------ik~------------------------------------ 446 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEEYPEALKYFQKALEV------------IKS------------------------------------ 446 (611)
T ss_pred hhhhhhhheeehHhhhHHHHHHHHHHHHH------------hhh------------------------------------
Confidence 88888888888889999999999887521 000
Q ss_pred cchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 043758 691 RTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGH 770 (918)
Q Consensus 691 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 770 (918)
.. ....-...+++.|..+|.+.+.+++|+..+++.+.. .+.|..++.++.-.|
T Consensus 447 -------------------------~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 447 -------------------------VL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIY 499 (611)
T ss_pred -------------------------cc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHH
Confidence 00 000123457888889999999999999999998875 344677888888889
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043758 771 IAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGL 805 (918)
Q Consensus 771 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 805 (918)
...|+++.|++.|++.+. +.|+..+-..++..+
T Consensus 500 ~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 500 HLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 999999999999998876 677765555555543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-06 Score=92.60 Aligned_cols=509 Identities=13% Similarity=0.014 Sum_probs=298.7
Q ss_pred hHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH---HhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 043758 63 SALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILR---GLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLI 139 (918)
Q Consensus 63 ~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 139 (918)
.+.+.|..+..+.++.++++..+......+...++.++-.+-. .|...|+.+++ .+...+.+.-.+ ....+...+
T Consensus 228 ~~~~~~~~Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~es~i~-Re~~~d~il 305 (799)
T KOG4162|consen 228 RAVELLPILWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEESLIP-RENIEDAIL 305 (799)
T ss_pred HHHHHhHHHhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHhhccc-cccHHHHHH
Confidence 3444444445777888888888888887775555544444332 24555666666 333333322212 111111111
Q ss_pred HHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCh
Q 043758 140 DGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNM 219 (918)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 219 (918)
... -.+.++.. ..+.-+...|..+.-++..+|+++.+.+.|++....-+. ....|+.+...|...|.-
T Consensus 306 slm----------~~~~k~r~-~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~ 373 (799)
T KOG4162|consen 306 SLM----------LLLRKLRL-KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSD 373 (799)
T ss_pred HHH----------HHHHHHHH-hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccc
Confidence 110 11222222 234456667777777788889999999999987765333 667889998899999999
Q ss_pred HHHHHHHHHHHhcCCCCChhh-HHHHHHHHH-hcCChhHHHHHHHHHHhC--CC--CccHhhHHHHHHHHHhc-------
Q 043758 220 KMAMRLFFRMLKTGCEPDSYT-CNTLIHGFF-KMGLFDKGWVLYSQMSDW--GF--QPNMVTDLIMISNYCRE------- 286 (918)
Q Consensus 220 ~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~------- 286 (918)
..|..+++.-......|+..+ +-..-..|. +.+.++++..+-.++... +. ...+..|..+.-+|...
T Consensus 374 s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~ 453 (799)
T KOG4162|consen 374 SKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLK 453 (799)
T ss_pred hHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCCh
Confidence 999999887765432354443 333333333 567778888777777652 11 12234444444444321
Q ss_pred ----CCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHH
Q 043758 287 ----GEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHA 362 (918)
Q Consensus 287 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 362 (918)
-...++.+.+++..+.+ +.|..+...+.--|+..++.+.|.+..++..+.+-..+...+..+.-.+...+++..|
T Consensus 454 seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 454 SERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 12346677777777665 3344444444455677788888888888887765555555555555555555555555
Q ss_pred HHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 043758 363 LMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNF 442 (918)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 442 (918)
..+.+.......... .....-++.-...++.++++.....+...
T Consensus 533 l~vvd~al~E~~~N~------------------------------------~l~~~~~~i~~~~~~~e~~l~t~~~~L~~ 576 (799)
T KOG4162|consen 533 LDVVDAALEEFGDNH------------------------------------VLMDGKIHIELTFNDREEALDTCIHKLAL 576 (799)
T ss_pred HHHHHHHHHHhhhhh------------------------------------hhchhhhhhhhhcccHHHHHHHHHHHHHH
Confidence 554443332211000 01111223333467777777776666531
Q ss_pred CCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHH--------HHcC-----------CCC
Q 043758 443 GYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQM--------EVRG-----------PKP 503 (918)
Q Consensus 443 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~-----------~~~ 503 (918)
-.+...+.. .++-....+.... ......+..++......+ ...| +.|
T Consensus 577 --we~~~~~q~-------~~~~g~~~~lk~~-----l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~ 642 (799)
T KOG4162|consen 577 --WEAEYGVQQ-------TLDEGKLLRLKAG-----LHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGP 642 (799)
T ss_pred --HHhhhhHhh-------hhhhhhhhhhhcc-----cccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCC
Confidence 000000000 0000000000000 000111111111111111 1111 111
Q ss_pred C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchh
Q 043758 504 S------VAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYP 577 (918)
Q Consensus 504 ~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 577 (918)
+ ...|......+.+.+..++|...+.+..+.. +-....|......+...|..++|.+.|......+ +-++.+
T Consensus 643 ~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s 720 (799)
T KOG4162|consen 643 DSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPS 720 (799)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHH
Confidence 2 2346667778888899999998888877653 4456677777778888999999999999988764 334578
Q ss_pred HHHHHHHHHhcCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043758 578 YTALISGLVKKGMVDLGCM--YLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTN 639 (918)
Q Consensus 578 ~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 639 (918)
..++...+.+.|+...|.. ++.++.+.+ +.+...|-.+...+.+.|+.+.|.+.|....+.
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 8899999999999888877 999999886 678999999999999999999999999988753
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-08 Score=104.94 Aligned_cols=298 Identities=13% Similarity=0.103 Sum_probs=204.9
Q ss_pred hhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHH
Q 043758 62 QSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDG 141 (918)
Q Consensus 62 ~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 141 (918)
+|.+-+...++...|++++|++.+......- ..........+..|.+.|+.++|...|..+++.+ |.|...|..+..+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I-~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQI-LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHH
Confidence 4555555677788999999999997755433 2234466688889999999999999999999997 5565566666666
Q ss_pred HHcC-----CChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchH-HHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 043758 142 LCYK-----GFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTV-EAESFAREMESQGFYVDKLMYTSLINGYCS 215 (918)
Q Consensus 142 ~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 215 (918)
+.-. .+.+...++|+.+.. .-|.......+.-.+.....+. .+...+..+..+|++ .+++.|-..|..
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~---~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d 155 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAE---KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKD 155 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHH---hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcC
Confidence 6322 356777899999876 2355444444433333333343 455667777888765 566777777776
Q ss_pred CCChHHHHHHHHHHHhc----C----------CCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHH
Q 043758 216 NRNMKMAMRLFFRMLKT----G----------CEPDSY--TCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIM 279 (918)
Q Consensus 216 ~g~~~~A~~~~~~m~~~----~----------~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (918)
..+..-..+++...... + -+|+.. ++..+...|-..|++++|.+++++.++.. +-.+..|..-
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~K 234 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTK 234 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 66666666666665432 1 123443 34555667789999999999999999884 3347788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH--------HHHHh
Q 043758 280 ISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLS--------FILLK 351 (918)
Q Consensus 280 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~~ll~ 351 (918)
...|-+.|++.+|.+.++.....+ ..|-..-+.....+.+.|++++|.+++......+..|..... .-...
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 999999999999999999998876 456666677788889999999999999888777654432211 11223
Q ss_pred hCCCCccHHHHHHHHHHH
Q 043758 352 NCPEGTELQHALMLLCEF 369 (918)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~ 369 (918)
++.+.|++..|...+..+
T Consensus 314 a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 445555555555544433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.8e-10 Score=123.76 Aligned_cols=248 Identities=12% Similarity=0.004 Sum_probs=165.6
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhc---------hhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCC
Q 043758 77 NIEDALRHFDRLISKNIVPIKLACVSILRGLFA---------EEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGF 147 (918)
Q Consensus 77 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 147 (918)
++++|..+|+++++.++. +..+|..+..++.. .+++++|...++++.+.+ +.+..++..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 467888888888887754 45566665554432 345788888888888776 5567778888888888888
Q ss_pred hhHHHHHHHHHHhcCCCCCC-cccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHH
Q 043758 148 LDEVLEVVNIMRKKKGLVPA-LHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLF 226 (918)
Q Consensus 148 ~~~A~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 226 (918)
+++|...|+++.+ ..|+ ...+..+..++...|++++|...+++..+..+. +...+..++..+...|++++|+..+
T Consensus 354 ~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANL---LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999888887 2343 456677777888888899999888888887554 3333444455566678888888888
Q ss_pred HHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-C
Q 043758 227 FRMLKTGCEPD-SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN-L 304 (918)
Q Consensus 227 ~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 304 (918)
++..+.. +|+ ...+..+..++...|++++|.+.++++.... +.+....+.+...|+..| +.|...++.+.+.. .
T Consensus 430 ~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 8877543 243 3346666777788888888888888876542 223444555556667666 46776666655431 1
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 305 APSVHCYTVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 305 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
.+....+ +-..+.-.|+.+.+..+ +++.+.
T Consensus 506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 1222222 33344556666666666 666654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.3e-07 Score=91.69 Aligned_cols=441 Identities=17% Similarity=0.108 Sum_probs=231.0
Q ss_pred HHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHH-------hCCCCCChhhHHHHHHHhhchhcHHHHHHHH
Q 043758 48 YSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLI-------SKNIVPIKLACVSILRGLFAEEKFLEAFDYF 120 (918)
Q Consensus 48 ~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 120 (918)
|-.+...-...|+.--|.+.| ..-|++..|..+.+... +.|.. ....|..-...-.-..++.+|..+|
T Consensus 480 w~~laelale~~nl~iaercf----aai~dvak~r~lhd~~eiadeas~~~ggd-gt~fykvra~lail~kkfk~ae~if 554 (1636)
T KOG3616|consen 480 WIRLAELALEAGNLFIAERCF----AAIGDVAKARFLHDILEIADEASIEIGGD-GTDFYKVRAMLAILEKKFKEAEMIF 554 (1636)
T ss_pred HHHHHHHHHHhccchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHhhCCC-CchHHHHHHHHHHHHhhhhHHHHHH
Confidence 344444445566655555555 55566666655554332 12211 1123332222223345778887776
Q ss_pred HHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCC
Q 043758 121 IKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFY 200 (918)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 200 (918)
-+- | .-...|..|....+|++|+.+-+.. |.+.-...-.+.+.++...|+-+.|-++ ...
T Consensus 555 leq-------n--~te~aigmy~~lhkwde~i~lae~~----~~p~~eklk~sy~q~l~dt~qd~ka~el----k~s--- 614 (1636)
T KOG3616|consen 555 LEQ-------N--ATEEAIGMYQELHKWDEAIALAEAK----GHPALEKLKRSYLQALMDTGQDEKAAEL----KES--- 614 (1636)
T ss_pred Hhc-------c--cHHHHHHHHHHHHhHHHHHHHHHhc----CChHHHHHHHHHHHHHHhcCchhhhhhh----ccc---
Confidence 431 1 2345566777788888888876543 3332233344556666666776666543 222
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHH
Q 043758 201 VDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMI 280 (918)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 280 (918)
+..+ -+-|..|.+.|.+.+|.+....-.. +..|......+..++.+..-+++|-.+|+++.. |+ ..+
T Consensus 615 -dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d----~d-----kal 681 (1636)
T KOG3616|consen 615 -DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FD-----KAL 681 (1636)
T ss_pred -cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HH-----HHH
Confidence 2222 3457788899988888776432221 234556666666677777677777777776642 11 223
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCcchH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccH
Q 043758 281 SNYCREGEVDAALMLLNSKVSSNLAPSVHCY-TVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTEL 359 (918)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 359 (918)
..|-+-.-+-+|.++-+-.. |..++.. ......+...|+++.|...|-+... .
T Consensus 682 e~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~~---------~------------- 735 (1636)
T KOG3616|consen 682 ECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------L------------- 735 (1636)
T ss_pred HHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------H-------------
Confidence 33333333455555443322 1111111 1223344455666666655533311 0
Q ss_pred HHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHH
Q 043758 360 QHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQL 439 (918)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 439 (918)
-..+.+.....+|.+|+.+++.+
T Consensus 736 ---------------------------------------------------------~kaieaai~akew~kai~ildni 758 (1636)
T KOG3616|consen 736 ---------------------------------------------------------IKAIEAAIGAKEWKKAISILDNI 758 (1636)
T ss_pred ---------------------------------------------------------HHHHHHHhhhhhhhhhHhHHHHh
Confidence 11222233334444444444444
Q ss_pred HHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcc----cCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043758 440 VNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDT----EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHL 515 (918)
Q Consensus 440 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 515 (918)
.... ...-.|..+...|+..|+++.|.++|...... .+|.+.|+++.|.++-++. .|+......|-+-..-+
T Consensus 759 qdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 759 QDQK--TASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDL 834 (1636)
T ss_pred hhhc--cccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhH
Confidence 3321 11222333334444444444444443332211 3344555556665555443 23454556666666677
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHH
Q 043758 516 CKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGC 595 (918)
Q Consensus 516 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 595 (918)
-+.|++.+|+++|-.+. .|+. .|..|-+.|..+..+++.++-... .=..|...+..-+-..|++..|.
T Consensus 835 dehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae 902 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAE 902 (1636)
T ss_pred HhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHH
Confidence 78888888888776554 3443 456778888888777776553221 11235556667777888888887
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043758 596 MYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLEN 634 (918)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 634 (918)
.-|-+.. -|.+-++.|..++-|++|.++-+
T Consensus 903 ~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 903 EHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 7664432 35566677777777777765543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-07 Score=99.67 Aligned_cols=421 Identities=12% Similarity=0.025 Sum_probs=226.6
Q ss_pred ChhhHHHHHH--HhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCC--------CC
Q 043758 96 IKLACVSILR--GLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKG--------LV 165 (918)
Q Consensus 96 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~ 165 (918)
|+.+..+++. -|..-|+.+.|.+..+-+... .+|..+.+.|.+.++++-|.-.+..|....| ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4556666664 367778999998887776533 4788899999988888888777766653111 12
Q ss_pred CCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 043758 166 PALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLI 245 (918)
Q Consensus 166 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 245 (918)
|+ ..-........+.|..++|+.+|.+..+. ..|=..|-..|.+++|+++-+.-.+.. =..||..-.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence 22 22222233345779999999999988774 344456677899999998876533322 224666666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChh
Q 043758 246 HGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLM 325 (918)
Q Consensus 246 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 325 (918)
.-+-..++.+.|++.|++.-.. --.+.. |+ ..++...+...+.+. |...|.-...-+-..|+.+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~h----afev~r-mL-----~e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVH----AFEVFR-ML-----KEYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCCh----HHHHHH-HH-----HhChHHHHHHHHhcc------chHHHHHHHHHHhcccchH
Confidence 6677788899999888864321 111111 11 112222222233322 2333444444445567777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHH
Q 043758 326 EVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIV 405 (918)
Q Consensus 326 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 405 (918)
.|+.+|..... |-.+.+..+-.|..++|.++-++-..
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esgd---------------------------------- 966 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESGD---------------------------------- 966 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhccc----------------------------------
Confidence 77777766543 33344555555666655554433211
Q ss_pred hcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCC
Q 043758 406 KSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGN 485 (918)
Q Consensus 406 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 485 (918)
..+.-.+.+.|-..|++.+|+..|.+.. ++...|+.|-..+--++-..+ -.+ ....+
T Consensus 967 -------~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nl-al~------s~~~d 1023 (1416)
T KOG3617|consen 967 -------KAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANL-ALM------SGGSD 1023 (1416)
T ss_pred -------HHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHH-Hhh------cCchh
Confidence 1333456677777788888887777665 344455543332221111111 111 12223
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHHCC--CCCcHHHHHHHHHHHHcCCC
Q 043758 486 LDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKR--------MLKAG--IDPDEVFFTTMINGYLQNRK 555 (918)
Q Consensus 486 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~~--~~~~~~~~~~l~~~~~~~~~ 555 (918)
.-.|...|++.- .. ....+..|-+.|.+.+|+++--+ ++... ...|+...+...+-++...+
T Consensus 1024 ~v~aArYyEe~g---~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1024 LVSAARYYEELG---GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred HHHHHHHHHHcc---hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH
Confidence 334444444321 11 11223356666666666554221 11111 23456666667777777777
Q ss_pred hHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHH
Q 043758 556 PIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLAD-GFVPNV----VLYTALINHFLRAGEFEFAS 630 (918)
Q Consensus 556 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~ 630 (918)
+++|..++-..++ |...+..| +..++.-..++-+.|.-. +-.|+. .+...+..+|.+.|.+..|-
T Consensus 1096 yekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~At 1165 (1416)
T KOG3617|consen 1096 YEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAAT 1165 (1416)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHH
Confidence 7777777766553 22222222 333333333333333222 112322 34555666777777777766
Q ss_pred HHHHH
Q 043758 631 RLENL 635 (918)
Q Consensus 631 ~~~~~ 635 (918)
+-|.+
T Consensus 1166 KKfTQ 1170 (1416)
T KOG3617|consen 1166 KKFTQ 1170 (1416)
T ss_pred HHHhh
Confidence 55543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.1e-07 Score=97.25 Aligned_cols=667 Identities=9% Similarity=-0.014 Sum_probs=329.8
Q ss_pred ChhHHHHHHHHHHhcCCCCCC-cccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHH
Q 043758 147 FLDEVLEVVNIMRKKKGLVPA-LHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRL 225 (918)
Q Consensus 147 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 225 (918)
+...|...|=+..+ ..++ ...|..|...|+...+...|.+.|+...+.... +...+......|+...+++.|..+
T Consensus 473 ~~~~al~ali~alr---ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALR---LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHh---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHH
Confidence 35555555555443 3333 456777888888777888899999988887554 777888899999999999999988
Q ss_pred HHHHHhcCCCCChhh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 043758 226 FFRMLKTGCEPDSYT--CNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN 303 (918)
Q Consensus 226 ~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 303 (918)
.-..-+.. +..... |....-.+-..++..++..-|+...... +-|...|..++.+|..+|.+..|.++|.++...+
T Consensus 549 ~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 549 CLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 44433321 111122 3333334557788888888888888765 5577789999999999999999999998777643
Q ss_pred CCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCC
Q 043758 304 LAPSV-HCYTVLIDALYKHNRLMEVDELYKKMLANR------VAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGI 376 (918)
Q Consensus 304 ~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 376 (918)
|+. ..-....-..+..|++.+|++.+....... ...-..++......+...|-...+..+++.....
T Consensus 627 --P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~---- 700 (1238)
T KOG1127|consen 627 --PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES---- 700 (1238)
T ss_pred --cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH----
Confidence 332 222223334566789999998887765421 0001111111111111112122222222111110
Q ss_pred ChhhhHHHhhcCC-CCC-----hHHHHHHHHHHHHhcCCCCchHhHHHHHHH-HHccCCh---H---HHHHHHHHHHHCC
Q 043758 377 DPLARSISATLNP-TGD-----LCQEIELLLRKIVKSDPKLANVAFTIYISA-LCKGGKY---E---KAYVCLFQLVNFG 443 (918)
Q Consensus 377 ~~~~~~~~~~~~~-~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~---~---~A~~~~~~~~~~~ 443 (918)
....+... ..+ ....+...|-.+. .+ .++ ..+..++.. .-..+.. + -+.+.+-.-.+
T Consensus 701 -----f~~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn-~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls-- 770 (1238)
T KOG1127|consen 701 -----FIVSLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVN-MHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS-- 770 (1238)
T ss_pred -----HHHHHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chH-HHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--
Confidence 00000000 000 0112222222222 11 111 112111111 1111111 1 11111111111
Q ss_pred CCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043758 444 YRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILE 523 (918)
Q Consensus 444 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 523 (918)
...+..+|..+...+.+.- ..+. -...+...|...+.+.++..- .+...|++|.-. ...|.+.-
T Consensus 771 l~~~~~~WyNLGinylr~f---------~~l~-----et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~ 834 (1238)
T KOG1127|consen 771 LAIHMYPWYNLGINYLRYF---------LLLG-----ETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVAC 834 (1238)
T ss_pred HhhccchHHHHhHHHHHHH---------HHcC-----CcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhh
Confidence 1223444444444433200 0000 011122456666666665522 256666666544 55566666
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHH--H
Q 043758 524 AEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDR--M 601 (918)
Q Consensus 524 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--~ 601 (918)
|..-|-+-.... +....+|..+...+.++.+++.|...|.+.+... +.|...|..........|+.-++..+|.. .
T Consensus 835 aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~e 912 (1238)
T KOG1127|consen 835 AQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDE 912 (1238)
T ss_pred hhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHH
Confidence 666666555443 4456677777777778888888888888777653 33444454433334456666666666655 1
Q ss_pred HhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHH
Q 043758 602 LAD--GFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEML 679 (918)
Q Consensus 602 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (918)
... |-.++...|-+........|+.++-+...+.+... .-.+
T Consensus 913 l~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sA------------------------------------s~al 956 (1238)
T KOG1127|consen 913 LCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSA------------------------------------SLAL 956 (1238)
T ss_pred hhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhh------------------------------------HHHH
Confidence 111 33445555555555556666666655554444321 1112
Q ss_pred HHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHh-cCCCCChhhHHHHH----HHHHccCChhHHHHHHHHHHHc
Q 043758 680 FHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKD-IEFMPNLYLYNDIF----LLLCGVGRMDDAYDHFQMMKRE 754 (918)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~m~~~ 754 (918)
.+.+...+....++.......-..+....+.....+... ....-+...|+.+. +.+...|.++.|..-+.....
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~- 1035 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM- 1035 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch-
Confidence 223333444444444444444444444444443333210 00122334444322 333333444433332221111
Q ss_pred CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 043758 755 GLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNAD-GCVPDK-TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKAT 832 (918)
Q Consensus 755 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 832 (918)
..+......-+. ..-.|+++++.+.|+++..- +-.-+. .....++.+....+.-+.|...+-+.... .+|+...
T Consensus 1036 --evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~s 1111 (1238)
T KOG1127|consen 1036 --EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQASS 1111 (1238)
T ss_pred --hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-Cccchhh
Confidence 112222222222 23457788888888887664 222232 33444445556667777777776666543 3455555
Q ss_pred HHHHHHHHHccCChhh---HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 833 YEHLLECFCANCLSIP---AFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 833 ~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.-.+-..+.-..+-.. +++-+++.+.... -+-......-.+|.+.||-....+++++..-..
T Consensus 1112 ll~L~A~~ild~da~~ssaileel~kl~k~e~-~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~ 1176 (1238)
T KOG1127|consen 1112 LLPLPAVYILDADAHGSSAILEELEKLLKLEW-FCWPPGLLKELIYALQGRSVAVKKQIQRAVHSN 1176 (1238)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHH-hccChhHHHHHHHHHhhhhHHHHHHHHHHHhcC
Confidence 4444443333333333 3333333333221 123333445556777788887777777665443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-10 Score=104.02 Aligned_cols=231 Identities=12% Similarity=0.041 Sum_probs=180.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhh
Q 043758 579 TALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRR 658 (918)
Q Consensus 579 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 658 (918)
+.+.++|.+.|.+.+|.+.++...+. .|-+.||..|..+|.+..+++.|+.++.+-.+ .-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~f---------------- 286 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SF---------------- 286 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cC----------------
Confidence 56778888888888888888887765 56677888888888888888888888877653 12
Q ss_pred cccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 043758 659 ITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGV 738 (918)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 738 (918)
+-++....-+...+-..
T Consensus 287 ---------------------------------------------------------------P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 287 ---------------------------------------------------------------PFDVTYLLGQARIHEAM 303 (478)
T ss_pred ---------------------------------------------------------------CchhhhhhhhHHHHHHH
Confidence 22333444445566666
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 043758 739 GRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVF 818 (918)
Q Consensus 739 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 818 (918)
++.++|.++|+...+.. +.+......+...|.-.++++.|+.+|+.+++.|+. +++.|+.+..+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 78888999988887742 234445566667788888999999999999988876 7788888888888899999999988
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 819 YSMHKRGFVPKK--ATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 819 ~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
++....--.|+. .+|-.+.....-.|++..|.+-+.-.+..+ +.+.++++.|+..-.+.|+.++|+.++.......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 888765444544 368888777788899999999999888877 7888999999999999999999999998776554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-09 Score=120.01 Aligned_cols=217 Identities=13% Similarity=0.009 Sum_probs=161.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHH
Q 043758 74 ALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLE 153 (918)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 153 (918)
..|++++|...++++++.++. +..++..+..++...|++++|+..|+++.+.+ |.+...+..+...+...|++++|+.
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345688999999999998865 67788888889999999999999999999886 5567788889999999999999999
Q ss_pred HHHHHHhcCCCCCCcc-cHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 154 VVNIMRKKKGLVPALH-PYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 154 ~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
.+++..+ ..|+.. .+..++..+...|++++|...+++..+...+-++..+..+..+|...|++++|...+.++...
T Consensus 394 ~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 394 TINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 9999987 344432 333445556678999999999999887643335566788888899999999999999997654
Q ss_pred CCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 233 GCEPDSY-TCNTLIHGFFKMGLFDKGWVLYSQMSDWG-FQPNMVTDLIMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 233 ~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
.|+.. ..+.+...+...| +.+...++.+.+.. ..+....+ +-..|.-.|+.+.+..+ +++.+.
T Consensus 471 --~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 471 --EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred --cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 44433 3455555666666 47777777776542 12222222 44456667787777766 777654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.2e-10 Score=102.65 Aligned_cols=270 Identities=10% Similarity=-0.023 Sum_probs=214.4
Q ss_pred CchhHHhhhhhhhHhcCChHHHHHHHHHHHhCC-CCCC------hh-hH-HHHHHHhhchhcHHHHHHHHHHHhhcCCCC
Q 043758 60 QSQSALLLYQNDFVALGNIEDALRHFDRLISKN-IVPI------KL-AC-VSILRGLFAEEKFLEAFDYFIKICNAGVDL 130 (918)
Q Consensus 60 ~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~------~~-~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 130 (918)
++..+..+|.-++...+|+..|........+.. ..|+ .. -| +.+.+.|.+.|.+.+|...++...+. .|
T Consensus 177 ~p~l~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~ 254 (478)
T KOG1129|consen 177 RPTLVKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FP 254 (478)
T ss_pred ChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CC
Confidence 445566677777777778887775554443321 1111 11 12 37889999999999999999988766 56
Q ss_pred cchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 043758 131 NCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLI 210 (918)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 210 (918)
.+.||-.+..+|.+....+.|+.++..-.. .++.++.....+.+.+-..++.++|.++++...+.... ++.....+.
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia 331 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIA 331 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeee
Confidence 777899999999999999999999999875 45666666677888888899999999999999887443 777777888
Q ss_pred HHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--HhhHHHHHHHHHhcCC
Q 043758 211 NGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN--MVTDLIMISNYCREGE 288 (918)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 288 (918)
..|.-.++++-|+..|.++.+.|+. +...|+.+.-+|.-.++++-++..|+.....--.|+ ..+|-.+.......||
T Consensus 332 ~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD 410 (478)
T KOG1129|consen 332 VGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD 410 (478)
T ss_pred eccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence 8888999999999999999999864 677888888888888999999999988876543444 3467778888889999
Q ss_pred HHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 289 VDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 289 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
+.-|.+.|+-....+ +.+..++|.|.-.-.+.|++++|..++.....
T Consensus 411 ~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 411 FNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999999999988776 46678899988888999999999999988765
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-09 Score=106.80 Aligned_cols=190 Identities=13% Similarity=0.040 Sum_probs=87.3
Q ss_pred hHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHH
Q 043758 72 FVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEV 151 (918)
Q Consensus 72 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 151 (918)
+...|++++|...|+++.+.++. +..++..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A 118 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQA 118 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHH
Confidence 34445555555555554443322 33344445555555555555555555554443 22333444444555555555555
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 043758 152 LEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (918)
.+.++........+. ....+..+...+...|++++|...|++..+
T Consensus 119 ~~~~~~~~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 119 MQQFEQAIEDPLYPQ-----------------------------------PARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHHHHHHHhcccccc-----------------------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555443111111 222344444445555555555555555444
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043758 232 TGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKV 300 (918)
Q Consensus 232 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 300 (918)
.. +.+...+..+...+...|++++|...+++..... +.+...+..+...+...|+.+.|..+.+.+.
T Consensus 164 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 164 ID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred hC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 31 1122344444445555555555555555554431 2333344444445555555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.7e-07 Score=92.87 Aligned_cols=229 Identities=14% Similarity=0.080 Sum_probs=147.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC--------CCCcchhHHHHHHHHHc
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAG--------VDLNCWSYNVLIDGLCY 144 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~ 144 (918)
.--|+.+.|.+..+-+. +...|..+.+.+.+..+.+-|.-.+..|.... .+.+...-.........
T Consensus 739 vtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAie 812 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIE 812 (1416)
T ss_pred EEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHH
Confidence 66788898877776654 44589999999999888887776665554211 11111222333344557
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 043758 145 KGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMR 224 (918)
Q Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 224 (918)
.|.+++|+.+|.+-.+ |..|=..|...|++.+|.++-+.-.+- . =..||.....-+-..++.+.|++
T Consensus 813 LgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHH
Confidence 8999999999988765 223445677889999998887654332 1 23466666666666788888888
Q ss_pred HHHHHH----------hcCC---------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHh
Q 043758 225 LFFRML----------KTGC---------EPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCR 285 (918)
Q Consensus 225 ~~~~m~----------~~~~---------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (918)
.|++.. .... ..|...|..-...+-..|+.+.|+.+|..... |-+++...|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 887532 1110 11222333333334455666666666665432 4556677777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 286 EGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKML 335 (918)
Q Consensus 286 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (918)
.|+.++|-++-++- .|..+...+.+.|-..|++.+|..+|.+..
T Consensus 951 qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 78888887776653 345566677888888888888888887764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.5e-09 Score=102.20 Aligned_cols=168 Identities=13% Similarity=0.012 Sum_probs=133.6
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH
Q 043758 724 NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGC-VPDKTVYNTLL 802 (918)
Q Consensus 724 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~ 802 (918)
+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++..... ......+..+.
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 142 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAG 142 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 45667777888888899999999999888753 23445677778888899999999999999887522 22445677788
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH
Q 043758 803 KGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFH 882 (918)
Q Consensus 803 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 882 (918)
.++...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..... +.++..+..++.++...|+.+
T Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 220 (234)
T TIGR02521 143 LCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVA 220 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 88999999999999999988642 2345577788888899999999999999988774 667778888899999999999
Q ss_pred HHHHHHHHHHhC
Q 043758 883 EAQIVLDVMHKR 894 (918)
Q Consensus 883 ~A~~~~~~~~~~ 894 (918)
+|..+.+.+.+.
T Consensus 221 ~a~~~~~~~~~~ 232 (234)
T TIGR02521 221 AAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhh
Confidence 999998887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-06 Score=87.69 Aligned_cols=136 Identities=18% Similarity=0.132 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHH--------HHHhCCCCCCchhHHHHHHHHHhcCCh
Q 043758 520 RILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFE--------KMKENSVQPGSYPYTALISGLVKKGMV 591 (918)
Q Consensus 520 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 591 (918)
.+..+.+++...-+.....+..+.-.++......|+++.|++++. .+.+.+..|. +...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 467777777777665322234566677778889999999999999 5555555554 445566677788777
Q ss_pred hHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhh
Q 043758 592 DLGCMYLDRMLAD--GFVPN----VVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRR 658 (918)
Q Consensus 592 ~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 658 (918)
+.|..++...+.. ...+. ..++.-+...-.+.|+.++|..+++++.+. ..+|..+...++.+|++.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL 505 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc
Confidence 7777777766543 11122 234444455557889999999999999863 456778888899998875
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-06 Score=83.09 Aligned_cols=303 Identities=15% Similarity=0.045 Sum_probs=160.9
Q ss_pred CCcHHHHHHHHHHH--HcCCChHHHHHHHHHHHhC-CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHH
Q 043758 537 DPDEVFFTTMINGY--LQNRKPIEACQLFEKMKEN-SVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPN-VVL 612 (918)
Q Consensus 537 ~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~ 612 (918)
+|...+....+.++ +-.++...|...+-.+... -++-|+..+..+.+.+...|+.++|...|+..... .|+ ...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence 34333333333333 3344444444444333322 24556666777777888888888888888777654 232 223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccc
Q 043758 613 YTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRT 692 (918)
Q Consensus 613 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (918)
.....-.+.+.|++++...+...+....- .| ...
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~----~t------------------------------------------a~~ 302 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVK----YT------------------------------------------ASH 302 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhh----cc------------------------------------------hhh
Confidence 33333445567777777666666643110 00 000
Q ss_pred hhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-cHHhHHHHHHHHH
Q 043758 693 KSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRP-NQVTFCILINGHI 771 (918)
Q Consensus 693 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~ 771 (918)
+......+...++++.|..+-++..... +.+...+-.-...+...|++++|.-.|...+. +.| +..+|..|+.+|.
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHH
Confidence 1111122223355555555555444222 22344444445666666777777776766655 333 3446777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-HcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChhh
Q 043758 772 AAGEIDQAIGLFNQMNADGCVPDKTVYNTLL-KGLC-QAGRLSHVFSVFYSMHKRGFVPKKA-TYEHLLECFCANCLSIP 848 (918)
Q Consensus 772 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~ 848 (918)
..|.+.+|...-+...+. +.-+..++..+. ..+. ...--++|.+++++..+ +.|+-. ....+...+...|.+.+
T Consensus 380 A~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D 456 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKD 456 (564)
T ss_pred hhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccch
Confidence 777777766555544442 222333333331 2222 11223556666666553 445433 34445556666677777
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 849 AFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 849 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
+..++++.+.. .||...+..|++++...+.+.+|.+.|...+..+
T Consensus 457 ~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 457 IIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 77777766643 5666667777777777777777777666665555
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-06 Score=90.66 Aligned_cols=128 Identities=13% Similarity=0.149 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHH
Q 043758 507 IYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPD-EVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGL 585 (918)
Q Consensus 507 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 585 (918)
++.-+...|...|++++|++++++.++. .|+ +..|..-...+-..|++++|.+.++..+..+ ..|...-+-.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHH
Confidence 4455677788899999999999998887 455 5677788888899999999999999998875 34666667777888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHHcCCHHHHHHHHHHHH
Q 043758 586 VKKGMVDLGCMYLDRMLADGFVPNVV------LY--TALINHFLRAGEFEFASRLENLMV 637 (918)
Q Consensus 586 ~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~a~~~~~~~~ 637 (918)
.+.|++++|.+++......+..|-.. .| .-...+|.+.|++..|++.|..+.
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 89999999999998887775433221 11 344567788888888887777665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.1e-08 Score=88.30 Aligned_cols=193 Identities=12% Similarity=-0.019 Sum_probs=161.6
Q ss_pred hhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhH
Q 043758 71 DFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDE 150 (918)
Q Consensus 71 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 150 (918)
-+...|+...|..-++++++.++. +..+|..+...|.+.|..+.|.+.|+++.... +-+-.+.|.....+|..|++++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHH
Confidence 348889999999999999998855 66688899999999999999999999998876 5577899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 043758 151 VLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRML 230 (918)
Q Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 230 (918)
|.+.|+..........-..+|..+.-+..+.|+++.|...|++..+..+. .+.+.-.+.......|++..|...+++..
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 99999999874444445678888888888999999999999999887554 56677888888999999999999999988
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 231 KTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDW 267 (918)
Q Consensus 231 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 267 (918)
..+. ++..+.-..|+.-...|+.+.+.++=.++...
T Consensus 201 ~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 201 QRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred hccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7764 78888888888888889988887776666554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.8e-06 Score=86.62 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=102.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCcHHHHHHHHHHHHcCCCh
Q 043758 485 NLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFK--------RMLKAGIDPDEVFFTTMINGYLQNRKP 556 (918)
Q Consensus 485 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 556 (918)
....+..++...-+..+..+..+.-.++......|+++.|.+++. .+.+.+..|-. ...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCC
Confidence 345666666666665455456677777888889999999999999 55555444444 44566667777777
Q ss_pred HHHHHHHHHHHhC--CCCCCchhHHHHHH----HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043758 557 IEACQLFEKMKEN--SVQPGSYPYTALIS----GLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFAS 630 (918)
Q Consensus 557 ~~A~~~~~~~~~~--~~~~~~~~~~~l~~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 630 (918)
+.|..++.+..+. .-.+.......++. .-.+.|+.++|..+++++.+.. ++|..+...++.+|.+. +++.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 7788877776542 11223333333333 3345799999999999999864 77899999999999876 578887
Q ss_pred HHHHHH
Q 043758 631 RLENLM 636 (918)
Q Consensus 631 ~~~~~~ 636 (918)
.+-+.+
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 776554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-10 Score=80.08 Aligned_cols=49 Identities=45% Similarity=0.815 Sum_probs=35.4
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 043758 201 VDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFF 249 (918)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 249 (918)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5667777777777777777777777777777777777777777777665
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-08 Score=103.28 Aligned_cols=244 Identities=14% Similarity=0.068 Sum_probs=162.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHH
Q 043758 576 YPYTALISGLVKKGMVDLGCMYLDRMLAD-----GF-VPNVV-LYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAY 648 (918)
Q Consensus 576 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 648 (918)
.+...+...|...|+++.|..+++..++. |. .|... ..+.+...|...+++.+|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~---------- 269 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT---------- 269 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----------
Confidence 34444666666666666666666655543 11 22222 233467778888999999988888763
Q ss_pred HHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhH
Q 043758 649 IALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLY 728 (918)
Q Consensus 649 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 728 (918)
+++...-...+.-..++
T Consensus 270 ---------------------------------------------------------------i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 270 ---------------------------------------------------------------IREEVFGEDHPAVAATL 286 (508)
T ss_pred ---------------------------------------------------------------HHHHhcCCCCHHHHHHH
Confidence 11111101112234677
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHc-----CCC-CcHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC----C
Q 043758 729 NDIFLLLCGVGRMDDAYDHFQMMKRE-----GLR-PNQV-TFCILINGHIAAGEIDQAIGLFNQMNAD---GCVP----D 794 (918)
Q Consensus 729 ~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~~-p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p----~ 794 (918)
+.|..+|.+.|++++|...+++..+. |.. |... .++.++..|...+++++|..+++...+. -+.+ .
T Consensus 287 ~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~ 366 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNL 366 (508)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHH
Confidence 77888888888888887777765432 222 2222 4566677788899999999888876553 1222 2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHccCChhhHHHHHHHHH----hCC--C
Q 043758 795 KTVYNTLLKGLCQAGRLSHVFSVFYSMHKR----GF--VP-KKATYEHLLECFCANCLSIPAFNMFKEMI----VHD--H 861 (918)
Q Consensus 795 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~--~ 861 (918)
..+++.|...|...|++++|.++++++... +. .+ ....++.+...|.+.++..+|..++.+.. ..| .
T Consensus 367 a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~ 446 (508)
T KOG1840|consen 367 AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH 446 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC
Confidence 367889999999999999999999987632 12 22 23467888888899999998888887754 233 1
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 862 VPCLSNCNWLLNILCQEKHFHEAQIVLDVMH 892 (918)
Q Consensus 862 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 892 (918)
|....+|..|+..|.+.|++++|.++.+.+.
T Consensus 447 ~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 447 PDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2224568889999999999999999988775
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-10 Score=78.42 Aligned_cols=49 Identities=35% Similarity=0.743 Sum_probs=29.0
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 043758 723 PNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHI 771 (918)
Q Consensus 723 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 771 (918)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555566666666666666666666666665566666666666655554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6e-08 Score=101.36 Aligned_cols=242 Identities=14% Similarity=0.088 Sum_probs=163.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhC-----C-CCCCchhH-HHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CC
Q 043758 542 FFTTMINGYLQNRKPIEACQLFEKMKEN-----S-VQPGSYPY-TALISGLVKKGMVDLGCMYLDRMLAD-----GF-VP 608 (918)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~ 608 (918)
+...+...|...|+++.|+.+++..++. | ..|...+. +.+...|...+++++|..+|+++.+- |- .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444555566666666666666555432 1 12333222 23666778888899998888887764 21 12
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCc
Q 043758 609 -NVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGT 687 (918)
Q Consensus 609 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (918)
-..+++.|..+|.+.|++++|...+++..+
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~------------------------------------------------- 311 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALE------------------------------------------------- 311 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHH-------------------------------------------------
Confidence 245677888889999999999998888753
Q ss_pred ccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHccCChhHHHHHHHHHHHc---CCCCcH---
Q 043758 688 LVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNL-YLYNDIFLLLCGVGRMDDAYDHFQMMKRE---GLRPNQ--- 760 (918)
Q Consensus 688 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~--- 760 (918)
|.++.. ....|.+ ..++.++..+...+++++|..+++...+. -..++.
T Consensus 312 ------------------------I~~~~~-~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~ 366 (508)
T KOG1840|consen 312 ------------------------IYEKLL-GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNL 366 (508)
T ss_pred ------------------------HHHHhh-ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHH
Confidence 111100 0011222 34566667778888888888888765442 122333
Q ss_pred -HhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh----CCC-C
Q 043758 761 -VTFCILINGHIAAGEIDQAIGLFNQMNAD-----G-CVP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHK----RGF-V 827 (918)
Q Consensus 761 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~ 827 (918)
.+++.|...|...|++++|.++++++++. | ..+ ....++.+...|.+.+.+.+|..+|.+... .|. .
T Consensus 367 a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~ 446 (508)
T KOG1840|consen 367 AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH 446 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC
Confidence 37888999999999999999999998764 1 122 246778888999999999999999887653 221 2
Q ss_pred C-CHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 043758 828 P-KKATYEHLLECFCANCLSIPAFNMFKEMI 857 (918)
Q Consensus 828 p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 857 (918)
| ...+|..|...|.+.|+++.|+++.+...
T Consensus 447 ~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 447 PDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 33578999999999999999999988875
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-07 Score=95.02 Aligned_cols=194 Identities=15% Similarity=0.001 Sum_probs=90.1
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC-cccHHHHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA-LHPYKSLFYA 177 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~ll~~ 177 (918)
.|..+...|...|+.++|+..|++..+.. +.+...|+.+...+...|++++|.+.|+...+ ..|+ ..++..+..+
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 44455555555556666655555555544 33445555555555556666666665555554 2222 3344445555
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKG 257 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 257 (918)
+...|++++|.+.|+...+..+. +. ........+...+++++|...|.+..... .|+...+ . ......|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH
Confidence 55555666666666555554322 11 11111112223455566666664433221 1221111 1 111223343332
Q ss_pred HHHHHHHHhC---CC---CccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 043758 258 WVLYSQMSDW---GF---QPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN 303 (918)
Q Consensus 258 ~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 303 (918)
+.+..+.+. .+ +.....|..+...+.+.|++++|...|+...+.+
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233333211 10 1122355566666666666666666666666544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-07 Score=95.81 Aligned_cols=220 Identities=10% Similarity=-0.093 Sum_probs=124.8
Q ss_pred chhcHHHHHHHHHHHhhcC-CCC--cchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchH
Q 043758 109 AEEKFLEAFDYFIKICNAG-VDL--NCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTV 185 (918)
Q Consensus 109 ~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 185 (918)
..+..+.++..+.+++... ..| ....|..+...+.+.|+.+.|...|+...+ -.+.+...|+.+...+...|+++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA--LRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCCHH
Confidence 3345566666666665432 111 123466666677777777777777777765 12334566677777777777777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 186 EAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
+|...|++..+..+. +..+|..+..++...|++++|++.|++..+. .|+..............++.++|...+++..
T Consensus 116 ~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 777777777765443 4566667777777777777777777777665 3433221222222334566777777776544
Q ss_pred hCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC---CC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 266 DWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSS---NL---APSVHCYTVLIDALYKHNRLMEVDELYKKMLANR 338 (918)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (918)
... .++... ..+.. ...|+...+ +.++.+.+. .+ +....+|..+...+.+.|++++|...|++..+.+
T Consensus 193 ~~~-~~~~~~-~~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKL-DKEQWG-WNIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhC-CccccH-HHHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 322 222221 12222 223444333 233333211 10 1223467777777777777777777777776644
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-05 Score=76.07 Aligned_cols=331 Identities=10% Similarity=0.036 Sum_probs=206.3
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccH-HHHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPY-KSLFYA 177 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~ll~~ 177 (918)
--..+.+.+..+|++..|+.-|..+++.+ +.+..++..-...|...|+...|+.=++++++ +.||...- ......
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchh
Confidence 33466777888899999999999888765 44555666667788889999999998888876 66774322 333455
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKG 257 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 257 (918)
+.+.|.+++|+.-|+.+....+. . |...+|.+-+..+.+. ......+..+...|+...|
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s--~-------------~~~~eaqskl~~~~e~------~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPS--N-------------GLVLEAQSKLALIQEH------WVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCC--c-------------chhHHHHHHHHhHHHH------HHHHHHHHHHhcCCchhhH
Confidence 77889999999999998887432 1 1111121111111100 1122234445566777777
Q ss_pred HHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 258 WVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
+.....+++.. +.|...|..-..+|...|++..|+.=++...+.. ..++..+..+-..+...|+.+.++...++.++
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK- 251 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK- 251 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-
Confidence 77777777654 5677777777777778888877777666655543 34555666666677777777777777777665
Q ss_pred CCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHH
Q 043758 338 RVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFT 417 (918)
Q Consensus 338 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 417 (918)
+.||...+-... ....++...+
T Consensus 252 -ldpdHK~Cf~~Y--------------------------------------------KklkKv~K~l------------- 273 (504)
T KOG0624|consen 252 -LDPDHKLCFPFY--------------------------------------------KKLKKVVKSL------------- 273 (504)
T ss_pred -cCcchhhHHHHH--------------------------------------------HHHHHHHHHH-------------
Confidence 445543221110 0001111000
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHH
Q 043758 418 IYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQME 497 (918)
Q Consensus 418 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 497 (918)
.-+......++|.++++..+...+.........++..-..| . .+...+++.+|++...+++
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c-~------------------C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC-T------------------CYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee-e------------------cccccCCHHHHHHHHHHHH
Confidence 01223445677888888888777654222233333221111 0 1234567788888888887
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043758 498 VRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAG 535 (918)
Q Consensus 498 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 535 (918)
+..+. |+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 335 ~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 335 DIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 75322 58888888889998899999999999998864
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-05 Score=78.28 Aligned_cols=289 Identities=10% Similarity=-0.025 Sum_probs=151.8
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 043758 145 KGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMR 224 (918)
Q Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 224 (918)
.++...|...+-.+.....++-|+.....+..++...|+..+|+..|+.....++. +...-....-.+.+.|+++....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHH
Confidence 34444444444333332344555555556666666666666666666665554211 11111111222334555555555
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 043758 225 LFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNL 304 (918)
Q Consensus 225 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 304 (918)
+...+.... +.....|..-+..+....+++.|..+-++.+..+ +.+...+..-...+...|+.+.|.-.|+......
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 544444321 1122233333333344455556655555555443 2233333333444555566666666665554432
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHH
Q 043758 305 APSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSIS 384 (918)
Q Consensus 305 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 384 (918)
|-+..+|.-|+.+|...|++.+|.-.-+..... ...+..+...+- .
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g---------------------------------~ 410 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFG---------------------------------T 410 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhc---------------------------------c
Confidence 335556666666666666666655544333221 111111111110 0
Q ss_pred hhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh
Q 043758 385 ATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFL 464 (918)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 464 (918)
..........+.|++++++-...+|... .+.+.+...+...|+.++++.+++..+.. .||....+.+...+...+.+
T Consensus 411 ~V~~~dp~~rEKAKkf~ek~L~~~P~Y~-~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 411 LVLFPDPRMREKAKKFAEKSLKINPIYT-PAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred eeeccCchhHHHHHHHHHhhhccCCccH-HHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhH
Confidence 1122223335777777777777666443 45677888999999999999999998875 68988888888887766655
Q ss_pred hhHHHHHHHh
Q 043758 465 EGANAIVELM 474 (918)
Q Consensus 465 ~~a~~~~~~~ 474 (918)
++|.+.|..+
T Consensus 488 Q~am~~y~~A 497 (564)
T KOG1174|consen 488 QKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHHH
Confidence 5554444433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4e-08 Score=87.58 Aligned_cols=165 Identities=17% Similarity=0.119 Sum_probs=112.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQ-VTFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTLLKG 804 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 804 (918)
....|.-.|.+.|+...|..-+++.++. .|+. .++..+...|-+.|+.+.|.+.|++..+. .| +..+.|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH
Confidence 3444556677777777777777777763 4443 36666666677777777777777777763 33 44666777777
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 043758 805 LCQAGRLSHVFSVFYSMHKRGFVPK-KATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHE 883 (918)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 883 (918)
+|..|++++|...|++....+.-|. ..+|..+..|..+.|+++.|...+++.++.+ |..+.....+...+.+.|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence 7777777777777777775544443 3367777777777777777777777777776 6667777777777777777777
Q ss_pred HHHHHHHHHhCCC
Q 043758 884 AQIVLDVMHKRGR 896 (918)
Q Consensus 884 A~~~~~~~~~~~~ 896 (918)
|...+++....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 7777776665554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-06 Score=80.15 Aligned_cols=307 Identities=12% Similarity=0.097 Sum_probs=187.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHH-HHHHHHcCCChhHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNV-LIDGLCYKGFLDEV 151 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A 151 (918)
.+..++.+|++++..-.+++++ +......+...|....++..|.+.|+++.... |...-|.. -...+.+.+.+..|
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHhcccHHH
Confidence 4455667777777777777644 67788888999999999999999999988664 33333322 33556688999999
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHH--HHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 043758 152 LEVVNIMRKKKGLVPALHPYKSLFY--ALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRM 229 (918)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 229 (918)
+++...|.. .++...-..-+. ..-..+++..+..+.++....| +..+.+...-...+.|+++.|.+-|+..
T Consensus 98 LrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 98 LRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred HHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHH
Confidence 999988864 132221111111 2345688889999988887532 5566666666777899999999999999
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhH----HHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 043758 230 LKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTD----LIMISNYCREGEVDAALMLLNSKVSSNLA 305 (918)
Q Consensus 230 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 305 (918)
.+.+--.....|+..+- ..+.|+++.|.++..+++++|+...+..- +-.+++- ..|+ ...+....
T Consensus 171 lqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgN---t~~lh~Sa------ 239 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGN---TLVLHQSA------ 239 (459)
T ss_pred HhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccc---hHHHHHHH------
Confidence 88543334467877764 44678999999999999998865322211 0011100 0010 01111110
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHH
Q 043758 306 PSVHCYTVLIDALYKHNRLMEVDELYKKMLAN-RVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSIS 384 (918)
Q Consensus 306 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 384 (918)
=+..+|.-...+.+.|+++.|.+.+.+|.-. ....|+.|...+.-.-. .+++..+
T Consensus 240 -l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g---------------------- 295 (459)
T KOG4340|consen 240 -LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEG---------------------- 295 (459)
T ss_pred -HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCcccc----------------------
Confidence 1233455555667788888888888777532 23345555432211100 0111111
Q ss_pred hhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHH
Q 043758 385 ATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQ 438 (918)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (918)
..-+.-+.+.+| ....++..++-.||+..-++-|-+++.+
T Consensus 296 -------------~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 296 -------------FEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred -------------HHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 111222233344 3347788888889999888888877654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-06 Score=88.29 Aligned_cols=261 Identities=11% Similarity=-0.006 Sum_probs=150.1
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCC-CCChh-hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH---
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNI-VPIKL-ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLC--- 143 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 143 (918)
...+...|+.+.+...+....+..+ .++.. ........+...|++++|...++++.+.. |.+...+.. ...+.
T Consensus 13 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~ 90 (355)
T cd05804 13 ALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLG 90 (355)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhc
Confidence 3333445556665555655554432 12211 22233344567789999999999888764 334444442 22222
Q ss_pred -cCCChhHHHHHHHHHHhcCCCCCCc-ccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHH
Q 043758 144 -YKGFLDEVLEVVNIMRKKKGLVPAL-HPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKM 221 (918)
Q Consensus 144 -~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 221 (918)
..+....+.+.++.. .+..|+. .....+...+...|++++|...+++..+..+. +...+..+..+|...|++++
T Consensus 91 ~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 91 DFSGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred ccccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHH
Confidence 234455555555441 2223333 23334556677889999999999998887544 66778888888999999999
Q ss_pred HHHHHHHHHhcCC-CCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CccHhhH-H--HHHHHHHhcCCHHHHHH
Q 043758 222 AMRLFFRMLKTGC-EPDS--YTCNTLIHGFFKMGLFDKGWVLYSQMSDWGF-QPNMVTD-L--IMISNYCREGEVDAALM 294 (918)
Q Consensus 222 A~~~~~~m~~~~~-~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~A~~ 294 (918)
|...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++..+...|....+.+
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 246 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR 246 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH
Confidence 9999988876432 1222 2355677788889999999999988764321 1111111 1 33333444454333333
Q ss_pred H--H-HHHhhCCCCCCcchHH--HHHHHHHhcCChhHHHHHHHHHHh
Q 043758 295 L--L-NSKVSSNLAPSVHCYT--VLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 295 ~--~-~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
+ + ....... +.....+. ....+++..|+.+.|..++..+..
T Consensus 247 w~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 247 WEDLADYAAWHF-PDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHHHHHhhc-CcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3 2 2111110 11112222 455666778888888888887765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.5e-06 Score=76.29 Aligned_cols=359 Identities=11% Similarity=0.059 Sum_probs=209.9
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHH-HHH
Q 043758 133 WSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTS-LIN 211 (918)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-li~ 211 (918)
--+.+.+..+.+..+++.|++++..-.+ .-+.+....+.+.-+|-...++..|..+++++-.. .|...-|.. -..
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~E--r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELE--RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 3466777777788888888888877765 12235556666677777778888888888887765 233333332 234
Q ss_pred HHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCH
Q 043758 212 GYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIH--GFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEV 289 (918)
Q Consensus 212 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 289 (918)
.+.+.+.+.+|+++...|... |+...-..-+. .....+++..+..+.++....| +..+.+.......+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 556777888888888777642 22222122222 2335677777877777766433 444555555666778888
Q ss_pred HHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHH
Q 043758 290 DAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEF 369 (918)
Q Consensus 290 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 369 (918)
+.|.+-|+...+-+--.....||..+ +..+.|++..|++...++.+.|++.-+. +++-+
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lgIGm------------------- 219 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LGIGM------------------- 219 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccc-------------------
Confidence 88888888877654344556666544 4556778888888888887777653221 00000
Q ss_pred HhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCc
Q 043758 370 AKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNF-GYRPLV 448 (918)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 448 (918)
...|. | + ...++........+ ..++|.-...+.+.++++.|.+.+.+|.-. .-..|+
T Consensus 220 ~tegi--D--v-------rsvgNt~~lh~Sal-----------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP 277 (459)
T KOG4340|consen 220 TTEGI--D--V-------RSVGNTLVLHQSAL-----------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP 277 (459)
T ss_pred eeccC--c--h-------hcccchHHHHHHHH-----------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc
Confidence 00000 0 0 00000000000000 134555556677889999999998888522 123466
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043758 449 FTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMF 528 (918)
Q Consensus 449 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 528 (918)
.|...+.-.- -.+++.+...-+.-+.+.++ ....|+..++-.||++.-++.|-+++
T Consensus 278 vTLHN~Al~n-----------------------~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 278 VTLHNQALMN-----------------------MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred hhhhHHHHhc-----------------------ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 6665543221 12344455555555555544 35678888888999999999998887
Q ss_pred HHHHHCCC-CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 043758 529 KRMLKAGI-DPDEVFFTTMINGYLQNRKPIEACQLFEKMKE 568 (918)
Q Consensus 529 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 568 (918)
.+-..... -.+...|+.+=......-.+++|.+-++.+.+
T Consensus 334 AEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 334 AENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred hhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 65432110 12344444443333445677888777766543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.87 E-value=0.00029 Score=76.24 Aligned_cols=497 Identities=12% Similarity=0.038 Sum_probs=251.7
Q ss_pred hhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhH
Q 043758 71 DFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDE 150 (918)
Q Consensus 71 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 150 (918)
.+.+.|+.++|..+++..-...+. |..+...+-..|...++.++|..+|+++.... |+......+..+|.|.+++.+
T Consensus 52 sl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHH
Confidence 346778888888777776655544 67788888888899999999999999988663 556777777788888887776
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHhccC-c---------hHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhcCCCh
Q 043758 151 VLEVVNIMRKKKGLVPALHPYKSLFYALCKNI-R---------TVEAESFAREMESQG-FYVDKLMYTSLINGYCSNRNM 219 (918)
Q Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~---------~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~ 219 (918)
-.++-=++-+ .++-+.+.+=++++.+.+.- . ..-|.+.++.+.+.+ .--+..-...-....-..|++
T Consensus 129 qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~ 206 (932)
T KOG2053|consen 129 QQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKY 206 (932)
T ss_pred HHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccH
Confidence 5554444443 23334444444554444321 1 123566666666654 111222222333445568889
Q ss_pred HHHHHHHHHH-HhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHH--------------
Q 043758 220 KMAMRLFFRM-LKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYC-------------- 284 (918)
Q Consensus 220 ~~A~~~~~~m-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------- 284 (918)
++|++++..- -+.-..-+...-+.-+..+...+++.+..++-.++...| ..| |...++.+.
T Consensus 207 ~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~-~Dd---y~~~~~sv~klLe~~~~~~a~~~ 282 (932)
T KOG2053|consen 207 QEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG-NDD---YKIYTDSVFKLLELLNKEPAEAA 282 (932)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC-Ccc---hHHHHHHHHHHHHhcccccchhh
Confidence 9999988433 222112222333455667778889999999888888876 223 222222111
Q ss_pred --hcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccH
Q 043758 285 --REGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALY---KHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTEL 359 (918)
Q Consensus 285 --~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 359 (918)
..+..+...+...+.... ...-.|-+-+.+.. .-|+.+++.-.|-+-. |-+| .|..=+..+.-.-..
T Consensus 283 ~s~~~~l~~~~ek~~~~i~~---~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf--g~kp---cc~~Dl~~yl~~l~~ 354 (932)
T KOG2053|consen 283 HSLSKSLDECIEKAQKNIGS---KSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF--GDKP---CCAIDLNHYLGHLNI 354 (932)
T ss_pred hhhhhhHHHHHHHHHHhhcc---cccCcHHHHHHHHHHhcccCChHHHHHHHHHHh--CCCc---HhHhhHHHhhccCCH
Confidence 112222223333322221 12223333333333 3366666655443221 2222 111111111111112
Q ss_pred HHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccC-----ChHHHHH
Q 043758 360 QHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGG-----KYEKAYV 434 (918)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~ 434 (918)
+....+............ ...+++... ...+..-.-.| .-+.-+.
T Consensus 355 ~q~~~l~~~l~~~~~~~s------------------~~~k~l~~h------------~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 355 DQLKSLMSKLVLADDDSS------------------GDEKVLQQH------------LCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HHHHHHHHHhhccCCcch------------------hhHHHHHHH------------HHHHHHHHHhhccccCChHHHHH
Confidence 222222222222111110 011111000 00000000011 0111111
Q ss_pred HHHHHH---H------CCCCCCcccH---------HHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHH
Q 043758 435 CLFQLV---N------FGYRPLVFTC---------NTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQM 496 (918)
Q Consensus 435 ~~~~~~---~------~~~~~~~~~~---------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 496 (918)
++++.. + .++-|+..++ +.++..+-+.++.. .+-+|+-+++..
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~-------------------~l~eaI~LLE~g 465 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLT-------------------DLFEAITLLENG 465 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHH-------------------HHHHHHHHHHHH
Confidence 121111 1 1233444333 34555555555443 445677777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCc-
Q 043758 497 EVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGS- 575 (918)
Q Consensus 497 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 575 (918)
..... .|..+--.+++.|+-.|-+..|.++|+.+.-+.+..|+..|..+ ..+...|++..+...+....+.- ..+.
T Consensus 466 lt~s~-hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~-~~~~t~g~~~~~s~~~~~~lkfy-~~~~k 542 (932)
T KOG2053|consen 466 LTKSP-HNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF-RRAETSGRSSFASNTFNEHLKFY-DSSLK 542 (932)
T ss_pred hhcCC-ccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHH-HHHHhcccchhHHHHHHHHHHHH-hhhhh
Confidence 66533 36777778899999999999999999988776666666555433 34555677777777766655431 1111
Q ss_pred hhHHHHHHHHHhcCChhHHHHHH---HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043758 576 YPYTALISGLVKKGMVDLGCMYL---DRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMV 637 (918)
Q Consensus 576 ~~~~~l~~~~~~~g~~~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 637 (918)
.+-. +|..-.+.|.+.+..+.. +++.......-..+-+..++.....++.+.-...+..|.
T Consensus 543 E~~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 543 ETPE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhHH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 1111 222233556655554432 223221111223344566667777777777777776664
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.8e-05 Score=77.90 Aligned_cols=429 Identities=14% Similarity=0.032 Sum_probs=212.3
Q ss_pred hhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCc-chhHHHHHHHHHcCCChh
Q 043758 71 DFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLN-CWSYNVLIDGLCYKGFLD 149 (918)
Q Consensus 71 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 149 (918)
+..-.|+++.|...|-.++...+. +.+.|..-..+|...|++++|++--.+.++.. |+ ...|.....++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccHH
Confidence 335677888888888877777655 77777777777888888888777666655543 33 346777777777778888
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHH-----HHHhcCCChHHHHH
Q 043758 150 EVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLI-----NGYCSNRNMKMAMR 224 (918)
Q Consensus 150 ~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~ 224 (918)
+|+..|..-.+ ..+.+...+..+..++ ....+. +. ..-++..|..+. +.+...-.+...+.
T Consensus 88 eA~~ay~~GL~--~d~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 88 EAILAYSEGLE--KDPSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHhh--cCCchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 88888877765 1233344445555544 111111 11 111333333332 22222222222211
Q ss_pred HHHHHHhcCCCCChh-h---HHHHHHHHHhcCChhHHHHHHHHHHhCC-------CCccHhhHHHHHHHHHhcCCHHHHH
Q 043758 225 LFFRMLKTGCEPDSY-T---CNTLIHGFFKMGLFDKGWVLYSQMSDWG-------FQPNMVTDLIMISNYCREGEVDAAL 293 (918)
Q Consensus 225 ~~~~m~~~~~~p~~~-~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~ 293 (918)
.+. . .|+.. . ...++.+.......+.- .....+ ..|.. -.....-..++..+-.
T Consensus 154 ~~~----~--~p~~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~----~~~~~~~~~~d~~ee~ 218 (539)
T KOG0548|consen 154 IIQ----K--NPTSLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCK----QEHNGFPIIEDNTEER 218 (539)
T ss_pred Hhh----c--CcHhhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCccc----ccCCCCCccchhHHHH
Confidence 111 1 11111 1 11122222111111110 111111 11110 0000000000000000
Q ss_pred HHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcC
Q 043758 294 MLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIG 373 (918)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 373 (918)
+. ..-..-.-.+.++..+..+++.|++.+....+.. -+..-++..-.++...+.+...+..-....+.|
T Consensus 219 ~~---------k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g 287 (539)
T KOG0548|consen 219 RV---------KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG 287 (539)
T ss_pred HH---------HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh
Confidence 00 0011224456666667777777777777776643 233333334445555555555554444433333
Q ss_pred CCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHH
Q 043758 374 CGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNT 453 (918)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 453 (918)
... +.-+.- -..++..+..+|.+.++++.++..|.+.+.....|+...-
T Consensus 288 re~---------------------rad~kl--------Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~-- 336 (539)
T KOG0548|consen 288 REL---------------------RADYKL--------IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSK-- 336 (539)
T ss_pred HHH---------------------HHHHHH--------HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHH--
Confidence 111 000000 0122333556777788999999999887755433332111
Q ss_pred HHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043758 454 LIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLK 533 (918)
Q Consensus 454 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 533 (918)
....+++....+...-.++.. ..-...-...+.+.|++..|+..|.++++
T Consensus 337 -----------------------------lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 337 -----------------------------LKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred -----------------------------HHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 112233333333332222221 11111225566777888888888888877
Q ss_pred CCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 534 AGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADG 605 (918)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 605 (918)
.. +-|...|.....+|.+.+.+..|+.-.+..++.+ ++....|..=..++....+++.|.+.|++.++.+
T Consensus 387 r~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 387 RD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred cC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 65 5567778888888888888888887777777653 2223333333344445567777777777777653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.7e-06 Score=87.32 Aligned_cols=264 Identities=14% Similarity=0.022 Sum_probs=162.9
Q ss_pred hhhHhcCChHHHHHHHHHHHhCCCCCChhhHHH---HHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCC
Q 043758 70 NDFVALGNIEDALRHFDRLISKNIVPIKLACVS---ILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKG 146 (918)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 146 (918)
..+...|++++|...++++.+..|. +..++.. ........+....+...++.. ....+........+...+...|
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcC
Confidence 3447889999999999999887644 4444442 122222345555555555541 1221223334455667888999
Q ss_pred ChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCC-CCh--hhHHHHHHHHhcCCChHHHH
Q 043758 147 FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFY-VDK--LMYTSLINGYCSNRNMKMAM 223 (918)
Q Consensus 147 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~ 223 (918)
++++|.+.++...+ . .+.+...+..+..++...|++++|...+++....... |+. ..|..+...+...|++++|+
T Consensus 129 ~~~~A~~~~~~al~-~-~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 129 QYDRAEEAARRALE-L-NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CHHHHHHHHHHHHh-h-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999987 2 2444567788888899999999999999998876432 222 24557888999999999999
Q ss_pred HHHHHHHhcCC-CCChhhH-H--HHHHHHHhcCChhHHHHH--HHHHHhCCC--CccHhhHHHHHHHHHhcCCHHHHHHH
Q 043758 224 RLFFRMLKTGC-EPDSYTC-N--TLIHGFFKMGLFDKGWVL--YSQMSDWGF--QPNMVTDLIMISNYCREGEVDAALML 295 (918)
Q Consensus 224 ~~~~~m~~~~~-~p~~~~~-~--~ll~~~~~~g~~~~a~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 295 (918)
.++++...... .+..... + .++.-+...|....+.++ +........ ............++...|+.+.|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 99999864422 1111111 1 223333344444333333 221111110 11122223566677889999999999
Q ss_pred HHHHhhCCCC------CCcchHHHHH--HHHHhcCChhHHHHHHHHHHhC
Q 043758 296 LNSKVSSNLA------PSVHCYTVLI--DALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 296 ~~~~~~~~~~------~~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
++.+...... ....+-..++ -++...|++++|.+.+......
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9887653211 0011222233 3455789999999998887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-05 Score=74.63 Aligned_cols=309 Identities=11% Similarity=0.013 Sum_probs=186.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHH
Q 043758 417 TIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQM 496 (918)
Q Consensus 417 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 496 (918)
.-+...+...|++.+|+.-|...++. |+..|.++.+-- ..|...|+...|+.-+..+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRa-------------------T~yLAmGksk~al~Dl~rV 98 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRA-------------------TVYLAMGKSKAALQDLSRV 98 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHH-------------------HHHhhhcCCccchhhHHHH
Confidence 34566777889999999999888753 344444443211 1123344555566666666
Q ss_pred HHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc--HH----------HH--HHHHHHHHcCCChHHHHH
Q 043758 497 EVRGPKPSVAI-YDAIIGHLCKEKRILEAEDMFKRMLKAGIDPD--EV----------FF--TTMINGYLQNRKPIEACQ 561 (918)
Q Consensus 497 ~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~----------~~--~~l~~~~~~~~~~~~A~~ 561 (918)
++. +||... --.-...+.+.|.++.|..-|+..++...... .. .| ...+..+...|+...|+.
T Consensus 99 lel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 99 LEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred Hhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 653 455332 12234567788888888888888887632111 11 11 223445667899999999
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043758 562 LFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQI 641 (918)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 641 (918)
....+++.. +-|...+..-..+|...|++..|+.-++...+.. ..+..++--+...+...|+.+.++...++.++ +
T Consensus 177 ~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--l 252 (504)
T KOG0624|consen 177 MITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--L 252 (504)
T ss_pred HHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--c
Confidence 999998863 4567777778889999999999998888877664 45667777788889999999999999999885 5
Q ss_pred CccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCC
Q 043758 642 EFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEF 721 (918)
Q Consensus 642 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 721 (918)
.||.-.+-..-..+-+.. + ....+....+.+++.++.+.-+.+.+...
T Consensus 253 dpdHK~Cf~~YKklkKv~-------------K-------------------~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVV-------------K-------------------SLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred CcchhhHHHHHHHHHHHH-------------H-------------------HHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 666443222111111000 0 00111122333555555555544443322
Q ss_pred CC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 722 MP---NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNA 788 (918)
Q Consensus 722 ~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 788 (918)
.. ....+..+..++...+++.+|+....+.+. +.|| ..++.--..+|.-..+++.|+.-|+...+
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 21 123344455555666666666666666665 3444 33454455566666666666666666665
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.6e-07 Score=92.14 Aligned_cols=249 Identities=14% Similarity=0.071 Sum_probs=187.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.+.|++.+|.-+|+.+...+|. +..+|--|.......++=..|+..+++..+.. +.|..++-.|.-.|...|.-..|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 8999999999999999998866 78899999999999999999999999999887 668888999999999999999999
Q ss_pred HHHHHHHhcCCCC-----C---CcccHHHHHHHHhccCchHHHHHHHHHHHhC-CCCCChhhHHHHHHHHhcCCChHHHH
Q 043758 153 EVVNIMRKKKGLV-----P---ALHPYKSLFYALCKNIRTVEAESFAREMESQ-GFYVDKLMYTSLINGYCSNRNMKMAM 223 (918)
Q Consensus 153 ~~~~~~~~~~~~~-----~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 223 (918)
..|+.-++ ...+ + +...-+. ..+.....+....++|-++... +-.+|+..+..|.-.|.-.|++++|.
T Consensus 374 ~~L~~Wi~-~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 374 KMLDKWIR-NKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHH-hCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 98888765 1100 0 0000000 1112223345566666666554 33478999999999999999999999
Q ss_pred HHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-HhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043758 224 RLFFRMLKTGCEPD-SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN-MVTDLIMISNYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 224 ~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 301 (918)
+.|+..+.. .|+ ...||.|...++...+.++|+..|.+.++. +|. +.+...|.-.|+..|.+.+|.+.|-..+.
T Consensus 451 Dcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999876 555 558999999999999999999999999986 454 45666677789999999999988866543
Q ss_pred ---CC------CCCCcchHHHHHHHHHhcCChhHHHHH
Q 043758 302 ---SN------LAPSVHCYTVLIDALYKHNRLMEVDEL 330 (918)
Q Consensus 302 ---~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~ 330 (918)
.+ ..++...|..|=.++...++.+.+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 11 112234666666666666666544443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-06 Score=88.52 Aligned_cols=400 Identities=10% Similarity=0.043 Sum_probs=237.3
Q ss_pred cCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHcCCCh
Q 043758 478 EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPD-EVFFTTMINGYLQNRKP 556 (918)
Q Consensus 478 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 556 (918)
...+..|+++.|+..|.+.+...+. |...|..-..+|.+.|++++|.+=-.+.++. .|+ ...|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 4567899999999999999988655 8889999999999999999998877777765 444 57899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCCh---hHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcC------
Q 043758 557 IEACQLFEKMKENSVQPGSYPYTALISGLVKKGMV---DLGCMYLDRMLAD---GFVPNVVLYTALINHFLRAG------ 624 (918)
Q Consensus 557 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g------ 624 (918)
++|+.-|.+-++.. +.+...++.+..++...... -.--.++..+... ........|..++..+.+.-
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999988874 34556667777766111000 0000111111110 00001112222222211100
Q ss_pred -CHHHHHHHHHHHHHCCCCccHHH-HHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHh
Q 043758 625 -EFEFASRLENLMVTNQIEFDLIA-YIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFS 702 (918)
Q Consensus 625 -~~~~a~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (918)
+.....+..-.+. ++...... -....... ...+........+..++..+.-. ..........+.++..+
T Consensus 166 l~d~r~m~a~~~l~--~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~d~~ee~~-----~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 166 LNDPRLMKADGQLK--GVDELLFYASGIEILAS--MAEPCKQEHNGFPIIEDNTEERR-----VKEKAHKEKELGNAAYK 236 (539)
T ss_pred cccHHHHHHHHHHh--cCccccccccccccCCC--CCCcccccCCCCCccchhHHHHH-----HHHhhhHHHHHHHHHHH
Confidence 0000000000000 00000000 00000000 00000000000000000000000 11112223455667777
Q ss_pred CCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhH-------HHHHHHHHhcCC
Q 043758 703 NGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTF-------CILINGHIAAGE 775 (918)
Q Consensus 703 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-------~~li~~~~~~g~ 775 (918)
..++..+++-+....+.. -++.-++....+|...|.+.+....-....+.|.. ...-| ..+..+|.+.++
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHh
Confidence 777788877777666554 45566666777888888777777666665554422 11122 223345666778
Q ss_pred HHHHHHHHHHHHhCCCCCCHHH-------------------------HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 043758 776 IDQAIGLFNQMNADGCVPDKTV-------------------------YNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKK 830 (918)
Q Consensus 776 ~~~A~~~~~~~~~~~~~p~~~~-------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 830 (918)
++.|+..|++.+..-..|+... -..-...+.+.|++..|+..+.++++.. +-|.
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da 392 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDA 392 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cchh
Confidence 8888888877665422232111 1112344667799999999999998753 3366
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 831 ATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 831 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
..|..-..||.+.|.+..|+.=.+..++.+ |+....|..-+.++....+|++|.+.|++.++.+
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 688888889999999999999999999887 8889999999999999999999999999988877
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.2e-07 Score=91.76 Aligned_cols=202 Identities=12% Similarity=0.002 Sum_probs=158.4
Q ss_pred HHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhH
Q 043758 56 IKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSY 135 (918)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 135 (918)
.+.++.-+|+..++......++=..|+..+.++++.++. +..+..+|.-.|...|.-.+|++.++.++...++ |
T Consensus 313 kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~-----y 386 (579)
T KOG1125|consen 313 KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPK-----Y 386 (579)
T ss_pred hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc-----c
Confidence 445556667777777777778888889999999998866 7889999999999999999999999999765421 0
Q ss_pred HHHH-----------HHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChh
Q 043758 136 NVLI-----------DGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKL 204 (918)
Q Consensus 136 ~~l~-----------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 204 (918)
..+. ..+.....+....++|-.+....+..+|...+..|.-.|--.|++++|..+|+..+...+. |..
T Consensus 387 ~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~ 465 (579)
T KOG1125|consen 387 VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYL 465 (579)
T ss_pred hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHH
Confidence 0000 1222233445566666666654666688889999999999999999999999999998665 888
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSY-TCNTLIHGFFKMGLFDKGWVLYSQMSD 266 (918)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 266 (918)
.||.|...++...+.++|+..|.+.++. +|+-+ ...-|.-+|...|.+++|...|=.++.
T Consensus 466 lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 466 LWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 67643 555566679999999999988876643
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-06 Score=84.97 Aligned_cols=221 Identities=8% Similarity=-0.052 Sum_probs=160.6
Q ss_pred cCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh-cHHHHHHHHHHHhhcCCCCcchhHH
Q 043758 58 FGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEE-KFLEAFDYFIKICNAGVDLNCWSYN 136 (918)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~ 136 (918)
.+++.+|...|..++...++.++|+.+++.+++.++. +..+|+....++...| ++++++..++++.... +-+..+|+
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~ 110 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWH 110 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhH
Confidence 4678889999999999999999999999999998855 5668887777777777 6799999999999876 55666787
Q ss_pred HHHHHHHcCCCh--hHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 043758 137 VLIDGLCYKGFL--DEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYC 214 (918)
Q Consensus 137 ~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 214 (918)
.....+.+.|+. +++++.++.+.+ .-+-+..+|+....++...|+++++...++++++.++. +..+|+....++.
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~ 187 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVIT 187 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHH
Confidence 776666666653 677888888876 23455677888888888889999999999999988766 7777877665554
Q ss_pred cC---CCh----HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----CChhHHHHHHHHHHhCCCCccHhhHHHHHHHH
Q 043758 215 SN---RNM----KMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKM----GLFDKGWVLYSQMSDWGFQPNMVTDLIMISNY 283 (918)
Q Consensus 215 ~~---g~~----~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (918)
+. |.. ++.+....++++.. +-|...|+.+...+... +...+|...+.+....+ +.+......|++.|
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~ 265 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLL 265 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHH
Confidence 43 222 45666666666553 33556777777666652 33455777777766543 34566666777777
Q ss_pred Hh
Q 043758 284 CR 285 (918)
Q Consensus 284 ~~ 285 (918)
+.
T Consensus 266 ~~ 267 (320)
T PLN02789 266 CE 267 (320)
T ss_pred Hh
Confidence 64
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.7e-07 Score=89.43 Aligned_cols=248 Identities=11% Similarity=0.020 Sum_probs=164.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
...|.+..++.-.+ ..............-+.+++...|+++.++.-. .... .|.......+...+...++-+.++
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei---~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEI---KKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS----TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHh---ccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 56788888886666 333332223445557788888899887655433 3333 566666666666665545666666
Q ss_pred HHHHHHHhcCCCC-CCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 043758 153 EVVNIMRKKKGLV-PALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 153 ~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (918)
.-++.... .... .+.........++...|++++|.+++... .+.......+..|++.++++.|.+.++.|.+
T Consensus 87 ~~l~~~~~-~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 87 EELKELLA-DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHCCC-TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHH-hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66655543 2222 22222233335567889999999887643 2677777888999999999999999999987
Q ss_pred cCCCCChhhHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 043758 232 TGCEPDSYTCNTLIHGFF----KMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPS 307 (918)
Q Consensus 232 ~~~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 307 (918)
. ..| .+...+..++. ....+.+|.-+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+ +.+
T Consensus 160 ~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~ 234 (290)
T PF04733_consen 160 I--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PND 234 (290)
T ss_dssp C--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCH
T ss_pred c--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCC
Confidence 5 334 44444555443 234689999999998765 46788899999999999999999999999988766 456
Q ss_pred cchHHHHHHHHHhcCCh-hHHHHHHHHHHhC
Q 043758 308 VHCYTVLIDALYKHNRL-MEVDELYKKMLAN 337 (918)
Q Consensus 308 ~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~ 337 (918)
..+...++.+....|+. +.+.+.+.++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 67777788888888887 6677787777653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.0011 Score=72.04 Aligned_cols=223 Identities=13% Similarity=0.115 Sum_probs=152.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH--hhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRG--LFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDE 150 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 150 (918)
...+++..|+...+.+.+.. |+. .|..++.+ +.+.|+.++|..+++.....+ ..|..|...+-..|...+..++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence 45566777777788877765 332 23333433 578899999998888776655 4477889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCC----------hH
Q 043758 151 VLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRN----------MK 220 (918)
Q Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~ 220 (918)
|..+|++... ..|+......++.+|.+.+++.+-.++--++-+. .+-++..+-++++.+.+.-. ..
T Consensus 96 ~~~~Ye~~~~---~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 96 AVHLYERANQ---KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHh---hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999976 5677888888999999999998877766666664 22255666666666654321 23
Q ss_pred HHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHH-HHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 221 MAMRLFFRMLKTGCEP-DSYTCNTLIHGFFKMGLFDKGWVLYS-QMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNS 298 (918)
Q Consensus 221 ~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 298 (918)
-|.+.++.+.+.+-+. +..-...-+..+...|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3555666666543111 22222233344567788999999883 333332234455555667788888999998888888
Q ss_pred HhhCC
Q 043758 299 KVSSN 303 (918)
Q Consensus 299 ~~~~~ 303 (918)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 88876
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00017 Score=86.98 Aligned_cols=311 Identities=9% Similarity=-0.009 Sum_probs=166.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCcH--HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCc----h
Q 043758 509 DAIIGHLCKEKRILEAEDMFKRMLKAG--I----DPDE--VFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGS----Y 576 (918)
Q Consensus 509 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~ 576 (918)
......+...|+++++...+......- . .+.. .....+...+...|++++|...+++....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 344455567789999999888776421 0 1111 12222334556789999999999887763111111 2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CccHHHH
Q 043758 577 PYTALISGLVKKGMVDLGCMYLDRMLAD----GF-VPNVVLYTALINHFLRAGEFEFASRLENLMVTNQI---EFDLIAY 648 (918)
Q Consensus 577 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~p~~~~~ 648 (918)
..+.+...+...|++++|...+++.... |. .....++..+...+...|++++|...+++..+..- .++...
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~- 571 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM- 571 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH-
Confidence 3344555667789999999888887653 21 11123445566778889999999988887653100 000000
Q ss_pred HHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcC--CCC--C
Q 043758 649 IALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIE--FMP--N 724 (918)
Q Consensus 649 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~--~~~--~ 724 (918)
...........+...|+++.|...+....... ..+ .
T Consensus 572 ----------------------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 572 ----------------------------------------HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 00001112233444577777777766554321 111 1
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC-CcHHhH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---H
Q 043758 725 LYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLR-PNQVTF-----CILINGHIAAGEIDQAIGLFNQMNADGCVPD---K 795 (918)
Q Consensus 725 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~ 795 (918)
...+..+...+...|+.++|...+.+....... .....+ ...+..+...|+.+.|...+........... .
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 233444555666677777777777666432100 000001 0112333446677777776655443211111 0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHccCChhhHHHHHHHHHhCC
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHKR----GFVPKK-ATYEHLLECFCANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 860 (918)
..+..+..++...|++++|...+++.... |..++. .++..+..++.+.|+.++|...+.+++...
T Consensus 692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 692 GQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 11334555666777777777777766532 222211 234444456677777777777777777665
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0011 Score=67.73 Aligned_cols=417 Identities=12% Similarity=0.017 Sum_probs=239.9
Q ss_pred CCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043758 445 RPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEA 524 (918)
Q Consensus 445 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 524 (918)
+-|..+|..+|+-+. ....+++...++++... .+.+...|..-+..-.+..+++..
T Consensus 17 P~di~sw~~lire~q-----------------------t~~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~V 72 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQ-----------------------TQPIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESV 72 (656)
T ss_pred CccHHHHHHHHHHHc-----------------------cCCHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHH
Confidence 567888999988653 23667777888888765 455788899999999999999999
Q ss_pred HHHHHHHHHCCCCCcHHHHHHHHHHHHc-CCChH----HHHHHHHHHH-hCCCCCCc-hhHHHHHHH---------HHhc
Q 043758 525 EDMFKRMLKAGIDPDEVFFTTMINGYLQ-NRKPI----EACQLFEKMK-ENSVQPGS-YPYTALISG---------LVKK 588 (918)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~----~A~~~~~~~~-~~~~~~~~-~~~~~l~~~---------~~~~ 588 (918)
+.+|.+.... ..+...|...++.-.+ .++.. ...+.|+-.+ +.|+.+-. ..|+..+.- +...
T Consensus 73 EkLF~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~ 150 (656)
T KOG1914|consen 73 EKLFSRCLVK--VLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEEN 150 (656)
T ss_pred HHHHHHHHHH--HhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHH
Confidence 9999998876 4567777777764433 23322 2333444333 34543322 345544433 2344
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHH------HHH-------HHHcCCHHHHHHHHHHHHH--CCCCccHHH------
Q 043758 589 GMVDLGCMYLDRMLADGFVPNVVLYTAL------INH-------FLRAGEFEFASRLENLMVT--NQIEFDLIA------ 647 (918)
Q Consensus 589 g~~~~a~~~~~~~~~~~~~~~~~~~~~l------~~~-------~~~~g~~~~a~~~~~~~~~--~~~~p~~~~------ 647 (918)
.+++...++++++...-+.-=...|+.. ++. --+...+..|.++++++.. .|+.-...+
T Consensus 151 QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T 230 (656)
T KOG1914|consen 151 QRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGT 230 (656)
T ss_pred HHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Confidence 5677788889888765222112233222 111 1133456667777776642 222111111
Q ss_pred ---------HHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHH-------HHHhCCCh-----
Q 043758 648 ---------YIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFS-------AVFSNGKK----- 706 (918)
Q Consensus 648 ---------~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~----- 706 (918)
|..++..=-.++-......+. .....-...+.+.--......+..... .+.+.|+.
T Consensus 231 ~~e~~qv~~W~n~I~wEksNpL~t~~~~~~---~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~ 307 (656)
T KOG1914|consen 231 KDEIQQVELWKNWIKWEKSNPLRTLDGTML---TRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKS 307 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcccccccHH---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchh
Confidence 222222110000000000000 011111112222222222222222222 22233333
Q ss_pred --hHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC---ChhHHHHHHHHHHHc-CCCCcHHhHHHHHHHHHhcCCHHHHH
Q 043758 707 --GTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVG---RMDDAYDHFQMMKRE-GLRPNQVTFCILINGHIAAGEIDQAI 780 (918)
Q Consensus 707 --~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~ 780 (918)
+++.++++...+.-..-+..+|..+.+.--..- ..+.....++++... ...|+. +|..+++.-.+..-++.|+
T Consensus 308 ~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHH
Confidence 334444444332222223333333332221111 255566667766543 234443 6777777777888889999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhC
Q 043758 781 GLFNQMNADGCVP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 781 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
.+|.++.+.+..+ ++..+++++.-|| .++.+-|.++|+--.++ +..++.--...+.-+.+.++-..|..++++.+..
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9999999987666 6777778877665 67889999999876653 3344444455666678889989999999999877
Q ss_pred CCCCC--cccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 860 DHVPC--LSNCNWLLNILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 860 ~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 893 (918)
+.+++ .++|...+.--..-|+.+.+.++-+++..
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66665 57888898888889999999888887754
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.8e-05 Score=79.44 Aligned_cols=223 Identities=9% Similarity=-0.000 Sum_probs=159.7
Q ss_pred hhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcC-ChHHHH
Q 043758 4 INRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALG-NIEDAL 82 (918)
Q Consensus 4 ~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g-~~~~A~ 82 (918)
.-.+.+.+|...|+.++...+...+|+.....+... .+..-.|...-+.++...| ++++++
T Consensus 31 ~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~l------------------nP~~ytaW~~R~~iL~~L~~~l~eeL 92 (320)
T PLN02789 31 AYTPEFREAMDYFRAVYASDERSPRALDLTADVIRL------------------NPGNYTVWHFRRLCLEALDADLEEEL 92 (320)
T ss_pred eeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------------CchhHHHHHHHHHHHHHcchhHHHHH
Confidence 345788899999999999888888888776654433 3333333333344444555 578899
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhhchhcH--HHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 83 RHFDRLISKNIVPIKLACVSILRGLFAEEKF--LEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
..++.+++.++. +..+|+....++.+.|+. ++++.+++++.+.. +-|..+|+...-++...|+++++++.++++++
T Consensus 93 ~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 93 DFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999998866 566788766666666653 67899999999887 56888999999999999999999999999997
Q ss_pred cCCCCCCcccHHHHHHHHhcc---Cch----HHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC----CChHHHHHHHHHH
Q 043758 161 KKGLVPALHPYKSLFYALCKN---IRT----VEAESFAREMESQGFYVDKLMYTSLINGYCSN----RNMKMAMRLFFRM 229 (918)
Q Consensus 161 ~~~~~~~~~~~~~ll~~~~~~---g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m 229 (918)
.. +.+...|+....++.+. |+. ++........+...+. |...|+-+...+... ++..+|.+.+.+.
T Consensus 171 -~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 171 -ED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred -HC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 22 44556666666555443 222 4566677677776555 888999988888773 3456688888887
Q ss_pred HhcCCCCChhhHHHHHHHHHh
Q 043758 230 LKTGCEPDSYTCNTLIHGFFK 250 (918)
Q Consensus 230 ~~~~~~p~~~~~~~ll~~~~~ 250 (918)
.+.+ +.+......|+..++.
T Consensus 248 ~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 248 LSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred hccc-CCcHHHHHHHHHHHHh
Confidence 6643 3355677777777764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.55 E-value=3e-06 Score=83.80 Aligned_cols=152 Identities=13% Similarity=0.106 Sum_probs=84.9
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----Hc
Q 043758 733 LLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLC----QA 808 (918)
Q Consensus 733 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~ 808 (918)
..+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCc
Confidence 4555566667666665432 23334444555666677777777777666653 223 22233333322 12
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCH-HHHHHH
Q 043758 809 GRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHF-HEAQIV 887 (918)
Q Consensus 809 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~ 887 (918)
+.+.+|..+|+++.+. ..++..+++.+..++...|++++|.+.+++....+ |.++.+...++.+....|+. +.+.+.
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 2566777777776543 45566666666666677777777777777766555 55666666666666666666 555566
Q ss_pred HHHHHhCC
Q 043758 888 LDVMHKRG 895 (918)
Q Consensus 888 ~~~~~~~~ 895 (918)
+..++...
T Consensus 259 l~qL~~~~ 266 (290)
T PF04733_consen 259 LSQLKQSN 266 (290)
T ss_dssp HHHCHHHT
T ss_pred HHHHHHhC
Confidence 66665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.4e-05 Score=87.91 Aligned_cols=218 Identities=10% Similarity=0.049 Sum_probs=166.7
Q ss_pred HHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC---cccHHHHHHHHhccCchHHHHHHHHHHHh
Q 043758 120 FIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA---LHPYKSLFYALCKNIRTVEAESFAREMES 196 (918)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 196 (918)
|++.+... |.+...|-..|......++.+.|+++++++.+...+.-. .-.|.++++.-...|.-+...++|++..+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 34444333 445567888888888999999999999998763222221 34677777777777878888899999887
Q ss_pred CCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc---H
Q 043758 197 QGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN---M 273 (918)
Q Consensus 197 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~ 273 (918)
-- . .-..|..|...|.+.+.+++|-++|+.|.+. .......|...+..+.+.++-+.|..++.+.++. -|. .
T Consensus 1526 yc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv 1600 (1710)
T KOG1070|consen 1526 YC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHV 1600 (1710)
T ss_pred hc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhH
Confidence 51 1 3456888999999999999999999999875 2345568888888899998889999999888775 232 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 043758 274 VTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHL 344 (918)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 344 (918)
......+..-.+.|+.+.++.+|+...... |.-...|+..++.-.++|+.+.+..+|++....++.|-..
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 344455666678899999999999988765 5567889999999999999999999999999888777554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.51 E-value=8e-06 Score=75.16 Aligned_cols=160 Identities=14% Similarity=-0.024 Sum_probs=86.6
Q ss_pred HHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q 043758 101 VSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCK 180 (918)
Q Consensus 101 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 180 (918)
......+...|+-+....+........ +.+.......+....+.|++..|...+.+... .-++|..+|+.+..+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 344444555555555555554433322 33444444455555666666666666666553 334555566666666666
Q ss_pred cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 043758 181 NIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVL 260 (918)
Q Consensus 181 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 260 (918)
.|++++|..-|.+..+..+. ++...|.|...|.-.|+.+.|..++......+ .-|...-..+..+....|+++.|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 66666666666665554332 45555666666666666666666666655442 12344444455555566666666665
Q ss_pred HHHHH
Q 043758 261 YSQMS 265 (918)
Q Consensus 261 ~~~~~ 265 (918)
..+-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 55443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.5e-06 Score=80.22 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=106.4
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-HHH
Q 043758 724 NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQ----VTFCILINGHIAAGEIDQAIGLFNQMNADGC-VPD-KTV 797 (918)
Q Consensus 724 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~ 797 (918)
....+..++..+...|++++|...|+++... .|+. ..+..+..++...|++++|+..++++.+... .|. ...
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3445555666666666777777766666553 2321 2445555666666777777777776665411 111 123
Q ss_pred HHHHHHHHHHc--------CChhHHHHHHHHHHhCCCCCCHH-HH-----------------HHHHHHHHccCChhhHHH
Q 043758 798 YNTLLKGLCQA--------GRLSHVFSVFYSMHKRGFVPKKA-TY-----------------EHLLECFCANCLSIPAFN 851 (918)
Q Consensus 798 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~-~~-----------------~~l~~~~~~~~~~~~A~~ 851 (918)
+..+..++... |++++|.+.++++.+. .|+.. .+ ..+...+.+.|++.+|..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 44444444443 5666667766666542 23221 11 134456889999999999
Q ss_pred HHHHHHhCC--CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 852 MFKEMIVHD--HVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 852 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.+++++... .|..+..+..++.++.+.|++++|...++.+....
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999998663 12335789999999999999999999999887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00046 Score=83.21 Aligned_cols=20 Identities=25% Similarity=-0.062 Sum_probs=13.2
Q ss_pred HHHHccCChHHHHHHHHHHH
Q 043758 421 SALCKGGKYEKAYVCLFQLV 440 (918)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~~~ 440 (918)
..+...|+.+.|..++....
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~ 680 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAP 680 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcC
Confidence 34445788888888766643
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0024 Score=65.24 Aligned_cols=213 Identities=12% Similarity=0.075 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHhCCCCCCchhHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043758 556 PIEACQLFEKMKENSVQPGSYPYTALISGLV---KKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRL 632 (918)
Q Consensus 556 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 632 (918)
.+++..+++.....-..-+..+|..+...-- .-+..+....+++++...-...-..+|-.+++.-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4556666666554322223333333322111 1113556666777766553233345677788888888888999999
Q ss_pred HHHHHHCCCCc-cHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHH
Q 043758 633 ENLMVTNQIEF-DLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQK 711 (918)
Q Consensus 633 ~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 711 (918)
|.++.+.+..+ +..++++++.-+|. ++.+.|.+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs----------------------------------------------kD~~~Afr 422 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS----------------------------------------------KDKETAFR 422 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc----------------------------------------------CChhHHHH
Confidence 99999888888 77788888888886 66677777
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 712 IVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQ--VTFCILINGHIAAGEIDQAIGLFNQMNAD 789 (918)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 789 (918)
+|+.-. ..+..++.--..-++.+...++-..|..+|++...+++.|+. ..|..+|.--+..|+...++++-+++...
T Consensus 423 IFeLGL-kkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 423 IFELGL-KKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHH-HhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 776332 222334455566677777888888888888888877666654 37888887777788888888777666553
Q ss_pred -C--CCCCHHHHHHHHHHHHHcCChhHHH
Q 043758 790 -G--CVPDKTVYNTLLKGLCQAGRLSHVF 815 (918)
Q Consensus 790 -~--~~p~~~~~~~l~~~~~~~g~~~~A~ 815 (918)
. ..+....-..+++-|.-.+.+.--.
T Consensus 502 f~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 502 FPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred cchhhcCCCChHHHHHHHHhhcccccccH
Confidence 1 2222233345556666555544333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-05 Score=72.77 Aligned_cols=160 Identities=14% Similarity=-0.003 Sum_probs=109.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 043758 136 NVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCS 215 (918)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 215 (918)
..+...+...|+-+....+...... ..+.+....+..+....+.|++.+|...|.+.....++ |...|+.+..+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHH
Confidence 5555666667777777766666542 23344445555777777778888888888877776543 77788888888888
Q ss_pred CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHH
Q 043758 216 NRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALML 295 (918)
Q Consensus 216 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 295 (918)
.|+++.|..-|.+..+.- .-+...++.+.-.+.-.|+++.|..++......+ .-|..+-..+.......|+++.|+.+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 888888888877777642 1233456667667777788888888877777664 33566666677777777888888777
Q ss_pred HHHHh
Q 043758 296 LNSKV 300 (918)
Q Consensus 296 ~~~~~ 300 (918)
...-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 65544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=8e-05 Score=83.98 Aligned_cols=241 Identities=12% Similarity=0.063 Sum_probs=183.7
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhc-CCCCc---chhHHHHHHHHHcCCChhHHHHHHH
Q 043758 81 ALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNA-GVDLN---CWSYNVLIDGLCYKGFLDEVLEVVN 156 (918)
Q Consensus 81 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (918)
-.+-|++.....|. +...|...+..+...++.++|.+++++++.. ++.-. ...|.+++......|.-+...++|+
T Consensus 1443 saeDferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred CHHHHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 34556677666644 5668999999999999999999999998742 22111 1356667766667788889999999
Q ss_pred HHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCC
Q 043758 157 IMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEP 236 (918)
Q Consensus 157 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 236 (918)
++.+ +......|..|...|.+.+++++|-++|+.|.++-- .....|...+..+.++++.+.|..++.+..+. -|
T Consensus 1522 RAcq---ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lP 1595 (1710)
T KOG1070|consen 1522 RACQ---YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LP 1595 (1710)
T ss_pred HHHH---hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cc
Confidence 9987 344456788999999999999999999999999733 47889999999999999999999999999876 33
Q ss_pred C---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCc--chH
Q 043758 237 D---SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSV--HCY 311 (918)
Q Consensus 237 ~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~ 311 (918)
. .......+..-.+.|+.+.+..+|+..+... +--...|+..+++-.+.|+.+.++.+|+++...+++|-- +.|
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 3 2233344445568899999999999998764 445678999999999999999999999999998765532 234
Q ss_pred HHHHHHHHhcCChhHHHH
Q 043758 312 TVLIDALYKHNRLMEVDE 329 (918)
Q Consensus 312 ~~ll~~~~~~g~~~~a~~ 329 (918)
...+..--..|+-..++.
T Consensus 1675 KkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHHHHHHhcCchhhHHH
Confidence 444443334455444333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-05 Score=83.33 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043758 576 YPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVT 638 (918)
Q Consensus 576 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 638 (918)
..-..+...+...|-...|..+|+++. .|.-.+.+|...|+..+|..+..+..+
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le 452 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE 452 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc
Confidence 333455666677777777777776653 455567777777777777666665543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.4e-07 Score=56.15 Aligned_cols=32 Identities=44% Similarity=0.794 Sum_probs=15.5
Q ss_pred CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043758 755 GLRPNQVTFCILINGHIAAGEIDQAIGLFNQM 786 (918)
Q Consensus 755 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 786 (918)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.3e-07 Score=56.24 Aligned_cols=32 Identities=38% Similarity=0.690 Sum_probs=18.8
Q ss_pred CCCCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 043758 198 GFYVDKLMYTSLINGYCSNRNMKMAMRLFFRM 229 (918)
Q Consensus 198 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 229 (918)
|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555566666666666666666666655555
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.1e-05 Score=75.89 Aligned_cols=57 Identities=11% Similarity=0.006 Sum_probs=30.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC--CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043758 245 IHGFFKMGLFDKGWVLYSQMSDWG--FQPNMVTDLIMISNYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 245 l~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 301 (918)
...+...|++++|...++...+.. -+.....+..+...+.+.|+.++|...++.+..
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334555566666666666655442 011234555556666666666666666555543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.4e-05 Score=70.59 Aligned_cols=120 Identities=6% Similarity=0.016 Sum_probs=81.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH-HccCC--hhh
Q 043758 773 AGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECF-CANCL--SIP 848 (918)
Q Consensus 773 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~~~--~~~ 848 (918)
.++.+++...++..++.. +.+...|..+...|...|++++|...+++..+ +.| +...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 456666666666666642 23567777777777777777777777777775 344 444555555553 45565 477
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043758 849 AFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGR 896 (918)
Q Consensus 849 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 896 (918)
|...+++.++.+ |.+..++..++..+.+.|++++|...++++.+...
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777777776 66777777777777777777777777777776653
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-05 Score=68.90 Aligned_cols=123 Identities=9% Similarity=-0.075 Sum_probs=74.0
Q ss_pred HHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 043758 747 HFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGF 826 (918)
Q Consensus 747 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 826 (918)
++++.++ +.|+. +..+..++...|++++|...|+.+.... +.+...|..+..++...|++++|+..+++..+. -
T Consensus 15 ~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~ 88 (144)
T PRK15359 15 ILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML-D 88 (144)
T ss_pred HHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C
Confidence 4444444 33443 3344555666777777777777766632 124566666666777777777777777776652 1
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 043758 827 VPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILC 876 (918)
Q Consensus 827 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (918)
+.+...+..+..++.+.|++++|...+...+... |.++..+..++.+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNAQI 137 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 2245566666666677777777777777776665 555666655555443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.6e-05 Score=70.48 Aligned_cols=152 Identities=10% Similarity=0.084 Sum_probs=103.0
Q ss_pred HHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCh
Q 043758 140 DGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNM 219 (918)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 219 (918)
..|...|++..+....+.+.. |. . .+...++.+++...+++..+.++. |...|..|...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~-----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD-----PL-H-------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC-----cc-c-------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 446667777666555433321 11 0 112255667777777777776554 778888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCC--hhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHH
Q 043758 220 KMAMRLFFRMLKTGCEPDSYTCNTLIHGF-FKMGL--FDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLL 296 (918)
Q Consensus 220 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 296 (918)
++|...|++..+.. +-+...+..+..++ ...|+ .++|.+++++..+.+ +.+..++..+...+...|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888887763 22445666666653 56566 478888888888775 446677777888888888888888888
Q ss_pred HHHhhCCCCCCc
Q 043758 297 NSKVSSNLAPSV 308 (918)
Q Consensus 297 ~~~~~~~~~~~~ 308 (918)
+.+.+.. +|+.
T Consensus 168 ~~aL~l~-~~~~ 178 (198)
T PRK10370 168 QKVLDLN-SPRV 178 (198)
T ss_pred HHHHhhC-CCCc
Confidence 8887765 3444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.6e-05 Score=84.69 Aligned_cols=193 Identities=10% Similarity=-0.014 Sum_probs=119.1
Q ss_pred cHHHHHHHHHHcCCchhHHh----hhhhhhHhcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHhhchhcHHHHHHHH
Q 043758 47 SYSALMKKLIKFGQSQSALL----LYQNDFVALGNIEDALRHFDRLISK--NIVPIKLACVSILRGLFAEEKFLEAFDYF 120 (918)
Q Consensus 47 ~~~~l~~~l~~~~~~~~a~~----~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 120 (918)
..+-+-.++..-|..++|-. ...+++.+.|.+..+...+-+++.. ....++.++..+..+..+.|++++|..++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l 109 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVW 109 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 34445556666666665522 2233445566555555544443321 22234667777777777777777777777
Q ss_pred HHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCC
Q 043758 121 IKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFY 200 (918)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 200 (918)
+.+.+.. |.+......++..+.+.+++++|+..+++... .-+.+......+..++.+.|++++|..+|+++...++.
T Consensus 110 ~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~ 186 (694)
T PRK15179 110 RGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE 186 (694)
T ss_pred HHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence 7777664 44555666777777777777777777777765 22333445556666677777777777777777764332
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 043758 201 VDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTL 244 (918)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 244 (918)
+..++..+..++...|+.++|...|++..+.. .|.+..|+..
T Consensus 187 -~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 187 -FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 46677777777777777777777777776542 2333444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.4e-05 Score=78.33 Aligned_cols=185 Identities=12% Similarity=0.013 Sum_probs=97.4
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcc------cCccccCChH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDT------EGNCKWGNLD 487 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~ 487 (918)
..|..+|.+|...|+..+|..+..+..+. +||+..|..+........-+++|.++.+..... ......++++
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs 502 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS 502 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence 45777888888888888888888887773 688888877777665554455555554433221 1112234455
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 043758 488 SALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMK 567 (918)
Q Consensus 488 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 567 (918)
++.+.|+...+.++- ...+|-.+..+..++++++.|.+.|....... +-+...||.+-.+|.+.++..+|...+.+..
T Consensus 503 ~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 503 EADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL 580 (777)
T ss_pred HHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence 555555444443221 34444444444455555555555555544431 2233445555555555555555555555554
Q ss_pred hCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 568 ENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLA 603 (918)
Q Consensus 568 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 603 (918)
+.+ .-+-..|...+....+.|.++.|++.+.++..
T Consensus 581 Kcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 581 KCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 443 22223333334444445555555555444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.7e-05 Score=66.95 Aligned_cols=109 Identities=8% Similarity=-0.049 Sum_probs=65.7
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 189 SFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWG 268 (918)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 268 (918)
.+|++..+. ++..+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+.....+
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444444444 33334455556666666666666666666542 2344566666666666666666666666666654
Q ss_pred CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 043758 269 FQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN 303 (918)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 303 (918)
+.+...+..+..++...|++++|...|+......
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4455666666666666666666666666666543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00013 Score=81.11 Aligned_cols=165 Identities=9% Similarity=-0.046 Sum_probs=111.6
Q ss_pred CCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCCh-hhHH
Q 043758 164 LVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDS-YTCN 242 (918)
Q Consensus 164 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~ 242 (918)
++.+...+..|..+..+.|.+++|+.+++...+..+. +...+..++.++.+.+++++|+..+++.... .|+. ...+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 5556777777777777888888888888888776443 5566777777777888888888888887765 3444 3556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcC
Q 043758 243 TLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHN 322 (918)
Q Consensus 243 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 322 (918)
.+..++.+.|++++|..+|+++...+ +.+..++..+...+...|+.++|...|+...+.. .+-...|+..+ +
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------V 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------H
Confidence 66667778888888888888887743 4446777777777888888888888887776543 23344444443 2
Q ss_pred ChhHHHHHHHHHHhCCC
Q 043758 323 RLMEVDELYKKMLANRV 339 (918)
Q Consensus 323 ~~~~a~~~~~~~~~~~~ 339 (918)
+...-...++++.-.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~ 247 (694)
T PRK15179 231 DLNADLAALRRLGVEGD 247 (694)
T ss_pred HHHHHHHHHHHcCcccc
Confidence 33444555555544433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00045 Score=77.72 Aligned_cols=272 Identities=11% Similarity=0.088 Sum_probs=143.6
Q ss_pred cchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCc-ccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 043758 131 NCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPAL-HPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSL 209 (918)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 209 (918)
+...+..++..+...+++++|.++.+...+ ..|+. ..|..+...+.+.+++..+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK---EHKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 445666666666667777777777776554 23332 2222222244444443333322 33
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCH
Q 043758 210 INGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEV 289 (918)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 289 (918)
+.......++.-+..+...|... .-+...+..+..+|-+.|+.+++..+++++++.. +-|+.+.|.+...|... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 33333344443444444444443 2234466666777777777777777777777766 55666777777777766 77
Q ss_pred HHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHH
Q 043758 290 DAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEF 369 (918)
Q Consensus 290 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 369 (918)
++|++++...... ++..+++..+.+++.++.... |+...+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~----------------------- 205 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDF----------------------- 205 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchH-----------------------
Confidence 7777777665531 555667777777777776532 222111
Q ss_pred HhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhc-CCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCc
Q 043758 370 AKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKS-DPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLV 448 (918)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 448 (918)
...+.+.+... +...-..++-.+-..|-..++|++++.+|+.+++.. +-+.
T Consensus 206 ---------------------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~ 257 (906)
T PRK14720 206 ---------------------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNN 257 (906)
T ss_pred ---------------------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-Ccch
Confidence 01111111111 111112445555666777778888888888887753 3344
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhcccCcccc-CChHHHHHHHHHHH
Q 043758 449 FTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKW-GNLDSALDILDQME 497 (918)
Q Consensus 449 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~ 497 (918)
....-++.+|. +.+.. ...++...+....... ..+..++.-|+...
T Consensus 258 ~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i 304 (906)
T PRK14720 258 KAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNRKPVKDCIADFEKNI 304 (906)
T ss_pred hhHHHHHHHHH--HHccC-cchHHHHHHHhccccCCccHHHHHHHHHHHe
Confidence 55555666554 22222 2223332222222222 45567777776654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00025 Score=71.53 Aligned_cols=127 Identities=17% Similarity=0.008 Sum_probs=78.7
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC-cccHHHHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA-LHPYKSLFYA 177 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~ll~~ 177 (918)
.+......+...|++++|+..++.+.... |.|.+.+......+.+.++.++|.+.++.+.. ..|+ ......+..+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~a 383 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHH
Confidence 44455555566667777777776655442 34444444555666667777777777777665 3344 3444556666
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRML 230 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 230 (918)
|.+.|++.+|.+++++.....+. |+..|..|..+|...|+..++.....++.
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 66777777777777766665444 66677777777777776666666665554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00039 Score=70.20 Aligned_cols=146 Identities=14% Similarity=0.088 Sum_probs=88.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTF-CILINGHIAAGEIDQAIGLFNQMNADGCVPD-KTVYNTLLKG 804 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 804 (918)
.+.-....+...|..++|...++.++.. .||...| ......+...++.++|.+.++++... .|+ ....-.+..+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~a 383 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHH
Confidence 3333344445556677777777776653 3444333 33344566677777777777776663 343 3445556666
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 043758 805 LCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEA 884 (918)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 884 (918)
|.+.|+..+|+.++++.... .+-++..|..|..+|...|+..+|.....+ .|.-.|+|++|
T Consensus 384 ll~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A 444 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQA 444 (484)
T ss_pred HHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHH
Confidence 77777777777777666543 344555666666677777766666444333 34566778888
Q ss_pred HHHHHHHHhCC
Q 043758 885 QIVLDVMHKRG 895 (918)
Q Consensus 885 ~~~~~~~~~~~ 895 (918)
...+...+++.
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 88887776654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00078 Score=75.84 Aligned_cols=168 Identities=10% Similarity=0.085 Sum_probs=111.8
Q ss_pred CchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHH-HHhcCChhhHHHHHHHhhcccCccccCChHHH
Q 043758 411 LANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKC-FYQVGFLEGANAIVELMQDTEGNCKWGNLDSA 489 (918)
Q Consensus 411 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a 489 (918)
.+..+|..|+..+...+++++|..+.+...+. .|+...+..+... +.+.++...+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~--------------------- 85 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSN--------------------- 85 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhh---------------------
Confidence 34478999999999999999999999977765 5666555444333 33333222111
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 043758 490 LDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKEN 569 (918)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 569 (918)
. ..++.......++.....+...+.+. .-+...+..+..+|-+.|+.++|..+|+++++.
T Consensus 86 -----------------l-v~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~ 145 (906)
T PRK14720 86 -----------------L-LNLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKA 145 (906)
T ss_pred -----------------h-hhhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 1 13444445555555555555566554 234456677777788888888888888888877
Q ss_pred CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043758 570 SVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVT 638 (918)
Q Consensus 570 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 638 (918)
. +-|..+.|.+...|... ++++|.+++.+.+.. +....++..+.++|.++..
T Consensus 146 D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 146 D-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred C-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh
Confidence 6 45667777777777777 788888777776543 5555677777777777765
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00035 Score=63.92 Aligned_cols=187 Identities=15% Similarity=0.155 Sum_probs=109.1
Q ss_pred ChhHHHHHHHHHHh---cC-CCCCh-hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHhcCCHHH
Q 043758 705 KKGTVQKIVLKVKD---IE-FMPNL-YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV-TFCILINGHIAAGEIDQ 778 (918)
Q Consensus 705 ~~~~a~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~ 778 (918)
+.+++.+++..+.. .| ..++. ..|..++-+....|+.+.|...++.+... + |... .-..-..-+-..|++++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhh
Confidence 44555555554442 22 23333 34444555555666777777777776654 2 3322 11111122345567777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHh
Q 043758 779 AIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIV 858 (918)
Q Consensus 779 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 858 (918)
|+++++.+++.+ +.|..++-.-+-.....|+--+|++-+....+. +..|...|.-+...|...|++++|.--+++++-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777776653 234455555555556666666777776666654 566777777777777777777777777777765
Q ss_pred CCCCCCcccHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Q 043758 859 HDHVPCLSNCNWLLNILCQEK---HFHEAQIVLDVMHKRGR 896 (918)
Q Consensus 859 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 896 (918)
.. |-++..+-.++..+.-.| +++-|++.|.+..+...
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 54 556666666666655444 55666677776666553
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00076 Score=62.33 Aligned_cols=217 Identities=11% Similarity=0.063 Sum_probs=113.6
Q ss_pred HHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCch
Q 043758 105 RGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRT 184 (918)
Q Consensus 105 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 184 (918)
+-+.-.|++..++..-...... +.+...-..+.++|...|.+...+ ..+.. +-.|.......+......-++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~--~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKE--GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccc--ccCChHHHHHHHHHHhhCcchh
Confidence 3445567776666655544322 133334444455565555443221 11111 1111111111111111222333
Q ss_pred HH-HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 043758 185 VE-AESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQ 263 (918)
Q Consensus 185 ~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 263 (918)
+. ..++.+.+.......+......-...|+..|++++|++...... +......=..++.+..+++-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 23344444444333222223333446777788888877766511 112222223345666777778888888
Q ss_pred HHhCCCCccHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 264 MSDWGFQPNMVTDLIMISNYCR----EGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANR 338 (918)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (918)
|.+.. +..|.+-|..++.+ .+.+.+|.-+|+++.++- +|+..+.+-...++...|++++|..+++..+...
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 87642 44555555555543 346777888888877643 5777777777777788888888888887777653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.4e-05 Score=66.05 Aligned_cols=108 Identities=12% Similarity=0.120 Sum_probs=75.1
Q ss_pred CCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHH
Q 043758 59 GQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVL 138 (918)
Q Consensus 59 ~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 138 (918)
+....+...+...+...|++++|.+.|+.+...++. ++..|..+...+...|++++|...++.....+ +.+...+..+
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 91 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA 91 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 333344444445556777777777778877776643 66677788888888888888888888877665 5566677777
Q ss_pred HHHHHcCCChhHHHHHHHHHHhcCCCCCCcccH
Q 043758 139 IDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPY 171 (918)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 171 (918)
...+...|+++.|.+.|+...+ ..|+...+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~ 121 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIE---ICGENPEY 121 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hccccchH
Confidence 7788888888888888888776 34444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0021 Score=59.55 Aligned_cols=121 Identities=15% Similarity=0.157 Sum_probs=80.8
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043758 733 LLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIA----AGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQA 808 (918)
Q Consensus 733 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 808 (918)
..+.+..+.+-|.+.+++|.+- -+..+.+-|..+|.+ .+.+.+|.-+|++|.++ ..|++.+.+....++...
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHh
Confidence 4445666778888888888763 244566666666543 34677788888888764 667777888888888888
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhh-HHHHHHHHHh
Q 043758 809 GRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIP-AFNMFKEMIV 858 (918)
Q Consensus 809 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~ 858 (918)
|++++|..++++...+. .-++.++..++.+-...|...+ ..+.+.++..
T Consensus 221 ~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred cCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 88888888888887653 3456666666665556665544 4455555543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00012 Score=62.91 Aligned_cols=128 Identities=13% Similarity=0.017 Sum_probs=98.5
Q ss_pred ccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHc-CCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 043758 22 NSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKF-GQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLAC 100 (918)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 100 (918)
..|+|+++..+..++..=| +...+ .... ++.-+.+.-++-.+...|++++|..+|+.+...++. +...|
T Consensus 3 ~~~~~~~~~~~~~f~~~Gg------sl~~l---~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~ 72 (157)
T PRK15363 3 KDPTLQQAHDTMRFFRRGG------SLRML---LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYW 72 (157)
T ss_pred CCchhhhHHHHHHHHHcCC------cHHHH---HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHH
Confidence 4567777776655554422 11111 1112 233344455555668999999999999999988765 67788
Q ss_pred HHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 101 VSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 101 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
..+..++...|++++|+..|....... +.|+.++..+..++...|+.+.|++.|+..+.
T Consensus 73 ~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 73 FRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 899999999999999999999999887 57888999999999999999999999999887
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0015 Score=59.95 Aligned_cols=161 Identities=12% Similarity=-0.001 Sum_probs=92.8
Q ss_pred HHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q 043758 102 SILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKN 181 (918)
Q Consensus 102 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 181 (918)
.+.-+....|+.+.|...++++...- +-+..+-..-.-.+-..|.+++|+++++.+.+ .-+.|..++..-+.+.-..
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--ddpt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DDPTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cCcchhHHHHHHHHHHHHc
Confidence 44444555666777777776665542 33333333333334456677777777777765 2244555555555555556
Q ss_pred CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcC---ChhHH
Q 043758 182 IRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSY-TCNTLIHGFFKMG---LFDKG 257 (918)
Q Consensus 182 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g---~~~~a 257 (918)
|+.-+|.+-+....+.- ..|...|.-+...|...|++++|.-.++++.-. .|... .+..+...+.-.| +.+.+
T Consensus 134 GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred CCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 66666766666666653 337777777777777777777777777777654 34333 3334444333222 45556
Q ss_pred HHHHHHHHhCC
Q 043758 258 WVLYSQMSDWG 268 (918)
Q Consensus 258 ~~~~~~~~~~~ 268 (918)
..+|.+.++..
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 67777766553
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.6e-05 Score=75.97 Aligned_cols=121 Identities=14% Similarity=0.089 Sum_probs=69.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 043758 766 LINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCL 845 (918)
Q Consensus 766 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 845 (918)
|+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|++++++..+. .+-+...+..-..-|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 3444445556666666666665532 33 3334555555566666666666666532 12233444444445566666
Q ss_pred hhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 846 SIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMH 892 (918)
Q Consensus 846 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 892 (918)
++.|++..+++.... |.+..+|..|+.+|.+.|++++|+-.++.+-
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666666654 5556666666666666666666666666553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.3e-05 Score=65.67 Aligned_cols=98 Identities=14% Similarity=0.017 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNIL 875 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (918)
.....+...+...|++++|.+.++...+.+ +.+...+..+..++.+.|++++|...++.....+ |.++..+..++.+|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334445555556666666666666655421 2244455555555566666666666666655554 55566666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 043758 876 CQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 876 ~~~g~~~~A~~~~~~~~~~~ 895 (918)
...|++++|...++...+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 66666666666666665554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00016 Score=64.03 Aligned_cols=125 Identities=12% Similarity=0.049 Sum_probs=82.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH----HHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCV--PDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKA----TYEH 835 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~ 835 (918)
.|..++..+ ..++...+...++.+...... ......-.+...+...|++++|...|+...+.. |+.. ....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHHHHH
Confidence 344444444 367777777777777775211 112333345566777888888888888887654 3332 3444
Q ss_pred HHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 043758 836 LLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVM 891 (918)
Q Consensus 836 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 891 (918)
+...+...|++++|+..++..... +..+..+..++++|.+.|++++|+..|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 566778888888888888663321 344667788888999999999998888754
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00043 Score=70.95 Aligned_cols=122 Identities=20% Similarity=0.165 Sum_probs=73.7
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 043758 173 SLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMG 252 (918)
Q Consensus 173 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 252 (918)
+++..+...++++.|..+|+++.+. ++.....++..+...++..+|.+++.+..+.. +.+......-...+...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~----~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER----DPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc----CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3444455556677777777777766 33344456666666666667777766666542 223444444455566666
Q ss_pred ChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043758 253 LFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKV 300 (918)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 300 (918)
+++.|..+.+++.+.. +.+-.+|..|..+|...|+++.|+..++.++
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6677777777666653 3334466666677777777777766666555
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.052 Score=54.73 Aligned_cols=363 Identities=13% Similarity=0.134 Sum_probs=187.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCC----CCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHH
Q 043758 417 TIYISALCKGGKYEKAYVCLFQLVNFGYR----PLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDI 492 (918)
Q Consensus 417 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~ 492 (918)
+..++.+...|++.++..+++++...-.+ -+..+|+.++-.++++ .
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS------------------------------Y 181 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS------------------------------Y 181 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH------------------------------H
Confidence 56677888899999999888888754333 5667777765555432 2
Q ss_pred HHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcC--CChHHHHHHHHHHH
Q 043758 493 LDQMEVR---GPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQN--RKPIEACQLFEKMK 567 (918)
Q Consensus 493 ~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~ 567 (918)
|-++.+. .+-|+ |--++..|.+.=. .++.-.-..+-|.......++....-. ....--.++++.-.
T Consensus 182 fLEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 182 FLELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 2222221 12222 2223333332211 011100001223333333333322211 11222234444444
Q ss_pred hCCCCCCchh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 043758 568 ENSVQPGSYP-YTALISGLVKKGMVDLGCMYLDRMLADGFV----PNVVLYTALINHFLRAGEFEFASRLENLMVTNQIE 642 (918)
Q Consensus 568 ~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 642 (918)
+..+.|+... ...++..+.. +.+++..+-+.+...... -=..++..++....+.++...|.+.+..+.. ..
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ld 328 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LD 328 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cC
Confidence 4555565432 2333333333 555555555555433111 1234677888888888999988888887763 44
Q ss_pred ccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHH----hCCChhHHHHHHHHHHh
Q 043758 643 FDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVF----SNGKKGTVQKIVLKVKD 718 (918)
Q Consensus 643 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~a~~~~~~~~~ 718 (918)
|+...-..++-.- ..+.+..+ ..-+...-..+|+....
T Consensus 329 p~~svs~Kllls~--------------------------------------~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs 370 (549)
T PF07079_consen 329 PRISVSEKLLLSP--------------------------------------KVLQDIVCEDDESYTKLRDYLNLWEEIQS 370 (549)
T ss_pred CcchhhhhhhcCH--------------------------------------HHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 5444322222110 00111111 01233444555555553
Q ss_pred cCCCCChhhHHHHH---HHHHccC-ChhHHHHHHHHHHHcCCCC-cHHhHHHHHH----HHH---hcCCHHHHHHHHHHH
Q 043758 719 IEFMPNLYLYNDIF---LLLCGVG-RMDDAYDHFQMMKREGLRP-NQVTFCILIN----GHI---AAGEIDQAIGLFNQM 786 (918)
Q Consensus 719 ~~~~~~~~~~~~l~---~~~~~~g-~~~~A~~~~~~m~~~~~~p-~~~~~~~li~----~~~---~~g~~~~A~~~~~~~ 786 (918)
..+... ..-.-|+ .-+-+.| .-++|+++++...+ +.| |..+-|.+.. +|. ....+..-+.+-+-+
T Consensus 371 ~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi 447 (549)
T PF07079_consen 371 YDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFI 447 (549)
T ss_pred hcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 332221 1111222 2233344 47888999988877 333 3333332221 222 122333334444444
Q ss_pred HhCCCCC----CHHHHHHHHHH--HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCC
Q 043758 787 NADGCVP----DKTVYNTLLKG--LCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 787 ~~~~~~p----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 860 (918)
.+.|++| +...-|.+.++ +...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|...+..+
T Consensus 448 ~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L---- 521 (549)
T PF07079_consen 448 TEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL---- 521 (549)
T ss_pred HhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC----
Confidence 4457777 33555666655 4578899988877777765 7888889988888888889999999998875
Q ss_pred CCCCcccHHH
Q 043758 861 HVPCLSNCNW 870 (918)
Q Consensus 861 ~~~~~~~~~~ 870 (918)
||+..+++.
T Consensus 522 -P~n~~~~ds 530 (549)
T PF07079_consen 522 -PPNERMRDS 530 (549)
T ss_pred -CCchhhHHH
Confidence 777776654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.8e-05 Score=48.24 Aligned_cols=33 Identities=42% Similarity=0.826 Sum_probs=20.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCC
Q 043758 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPD 237 (918)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 237 (918)
+||++|.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666555
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.3e-05 Score=47.54 Aligned_cols=33 Identities=33% Similarity=0.715 Sum_probs=18.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN 759 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 759 (918)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00057 Score=58.81 Aligned_cols=96 Identities=9% Similarity=-0.038 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHH
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNI 874 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 874 (918)
.....+...+...|++++|.++|+-+.. +.| +..-|-.|..++...|++++|+..+..+...+ |.|++.+..++.+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3444455556666777777777666654 334 33345556666666677777777777766666 6667777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 043758 875 LCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 875 ~~~~g~~~~A~~~~~~~~~~ 894 (918)
|...|+.+.|++-|+.....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777665543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0013 Score=58.30 Aligned_cols=124 Identities=17% Similarity=0.165 Sum_probs=72.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--HhhHHHH
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDS----YTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN--MVTDLIM 279 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l 279 (918)
|..++..+ ..++...+...++.+.+.. |+. .....+...+...|++++|...|+.+......++ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 33344333 3666677777777776652 232 1223344556667777777777777776542222 1234445
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 043758 280 ISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKM 334 (918)
Q Consensus 280 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 334 (918)
...+...|++++|...++..... ......+....+++...|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66677777777777777654332 233445556667777777777777777653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.3e-05 Score=60.63 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=49.5
Q ss_pred cCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 043758 808 AGRLSHVFSVFYSMHKRGF-VPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQI 886 (918)
Q Consensus 808 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 886 (918)
.|++++|+.+++++.+..- .|+...+-.+..++++.|++++|..++++ ...+ +.+......++.+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4667777777777765321 11333445566677777777777777766 3333 3445566666777777777777777
Q ss_pred HHHH
Q 043758 887 VLDV 890 (918)
Q Consensus 887 ~~~~ 890 (918)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.043 Score=58.10 Aligned_cols=177 Identities=13% Similarity=0.009 Sum_probs=102.0
Q ss_pred CCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCC--------CCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCC
Q 043758 129 DLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLV--------PALHPYKSLFYALCKNIRTVEAESFAREMESQGFY 200 (918)
Q Consensus 129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 200 (918)
.|.+..|..+.......-.++.|...|-+...=.|+. .+.....+=+ -+--|++++|++++-++.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHhhhhhhccchhh--
Confidence 4667778777766655555666665554432201110 0001111111 223478888888887777652
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHH
Q 043758 201 VDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPD---SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDL 277 (918)
Q Consensus 201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (918)
.-|..+.+.|++-...++++.-- .+ ..| ...|+.+...++....|++|.++|..-... .
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~-~d-~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e 826 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGG-SD-DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------E 826 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccC-CC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------H
Confidence 23556667777777776664311 11 111 236777777777777888888877754321 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 043758 278 IMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYK 332 (918)
Q Consensus 278 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 332 (918)
..+.++.+..++++-+.+-..+. -+....-.+.+++...|.-++|.+.|-
T Consensus 827 ~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHH
Confidence 24555666666666555554443 345566677788888888888887763
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.68 E-value=7e-05 Score=46.53 Aligned_cols=32 Identities=25% Similarity=0.492 Sum_probs=17.9
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCC
Q 043758 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEP 236 (918)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 236 (918)
+|+.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.5e-05 Score=46.38 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=16.6
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMMKREGLRP 758 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 758 (918)
+|+.++.+|++.|+++.|..+|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.011 Score=59.28 Aligned_cols=124 Identities=12% Similarity=0.111 Sum_probs=67.3
Q ss_pred HHHHHHcc-CChhHHHHHHHHHHHc----CCCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCH-HH
Q 043758 731 IFLLLCGV-GRMDDAYDHFQMMKRE----GLRPN--QVTFCILINGHIAAGEIDQAIGLFNQMNADGC-----VPDK-TV 797 (918)
Q Consensus 731 l~~~~~~~-g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~-~~ 797 (918)
+...|... |++++|++.|++..+. | .+. ..++..+...+.+.|++++|.++|+++..... +.+. ..
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 34566666 7777777777765442 2 111 12455566677788888888888887766421 1122 22
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCCH--HHHHHHHHHHHccCChhhHHHHHHHH
Q 043758 798 YNTLLKGLCQAGRLSHVFSVFYSMHKR--GFVPKK--ATYEHLLECFCANCLSIPAFNMFKEM 856 (918)
Q Consensus 798 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~ 856 (918)
+-..+-++...|+...|.+.+++.... ++..+. .....|+.+ +..|+.+.-...+...
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A-~~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA-YEEGDVEAFTEAVAEY 260 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH-HHTT-CCCHHHHCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH-HHhCCHHHHHHHHHHH
Confidence 333344566678888888888887643 222222 245666666 5666655544444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.015 Score=56.28 Aligned_cols=181 Identities=9% Similarity=0.032 Sum_probs=100.2
Q ss_pred HHhhhhhhh--HhcCChHHHHHHHHHHHhCCCCCChh--hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 043758 64 ALLLYQNDF--VALGNIEDALRHFDRLISKNIVPIKL--ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLI 139 (918)
Q Consensus 64 a~~~~~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 139 (918)
+.+.|..+. ...|++++|.+.|+.+....+.+... +...++.++.+.+++++|+..+++..+..+......+...+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 334444333 67789999999999988876543211 22456677888899999999999888765332233333333
Q ss_pred HHHHc--CC---------------Ch---hHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCC
Q 043758 140 DGLCY--KG---------------FL---DEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGF 199 (918)
Q Consensus 140 ~~~~~--~g---------------~~---~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 199 (918)
.+.+. .+ |. ..|+..|+.+++ .-|+. .-..+|...+..+...
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---~yP~S-------------~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---GYPNS-------------QYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---HCcCC-------------hhHHHHHHHHHHHHHH--
Confidence 33321 11 11 234445555544 11222 1123333333333222
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043758 200 YVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTG--CEPDSYTCNTLIHGFFKMGLFDKGWVLYSQM 264 (918)
Q Consensus 200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 264 (918)
=...--.+...|.+.|.+..|..-|+.+.+.- .+........+..++...|..++|..+...+
T Consensus 174 --la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 --LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred --HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11111244556777777777777777777641 1122234556667777777777777666554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00073 Score=54.99 Aligned_cols=96 Identities=9% Similarity=-0.012 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 043758 798 YNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQ 877 (918)
Q Consensus 798 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 877 (918)
+..+...+...|++++|...+++..+. .+.+...+..+..++...+++++|...++...... +.+...+..++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344555666667777777777766542 12233455556666666777777777777766654 5555677777777777
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 043758 878 EKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 878 ~g~~~~A~~~~~~~~~~~ 895 (918)
.|++++|...++...+.+
T Consensus 81 ~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHhHHHHHHHHHHHHccC
Confidence 777777777777665543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00011 Score=57.66 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=59.8
Q ss_pred cCChHHHHHHHHHHHhCCCC-CChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHH
Q 043758 75 LGNIEDALRHFDRLISKNIV-PIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLE 153 (918)
Q Consensus 75 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 153 (918)
+|+++.|+..|+++.+..+. |+...+..++.+|.+.|++++|+.++++ ...+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57888899999998887652 3455666788999999999999999988 3332 2233455566788889999999999
Q ss_pred HHHH
Q 043758 154 VVNI 157 (918)
Q Consensus 154 ~~~~ 157 (918)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8876
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.093 Score=51.83 Aligned_cols=301 Identities=19% Similarity=0.173 Sum_probs=190.0
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH--HHHcCCChHHHHHHHHHHHhCCCCCCchh--HHH
Q 043758 507 IYDAIIGHLCK--EKRILEAEDMFKRMLKAGIDPDEVFFTTMIN--GYLQNRKPIEACQLFEKMKENSVQPGSYP--YTA 580 (918)
Q Consensus 507 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~ 580 (918)
-|.+|-.++.. .|+-..|.++-.+..+. +..|....-.++. +-.-.|+++.|.+-|+.|... |.... +..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 34555555443 47788887777665532 2334444444444 344579999999999999863 33322 233
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCccHHH--HHHHHHHHhh
Q 043758 581 LISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQ-IEFDLIA--YIALVSGVCR 657 (918)
Q Consensus 581 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~--~~~ll~~~~~ 657 (918)
|.-.--+.|+.+.|.++-+.....- +--.-.+...+...+..|+|+.|+++++.-.+.. +.++..- -..|+.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 3334456899999999988877652 2234577888899999999999999998876544 4454332 2234433222
Q ss_pred hcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 043758 658 RITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCG 737 (918)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 737 (918)
..-... -....+...+..+..+...+........+++.|+..++-++++.+=+....|++ + ..|.+
T Consensus 239 s~ldad--------p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a----~lY~~ 304 (531)
T COG3898 239 SLLDAD--------PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A----LLYVR 304 (531)
T ss_pred HHhcCC--------hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H----HHHHH
Confidence 111000 123345556666777777777888888899999999998888877655444432 2 23444
Q ss_pred cCChhHHHHHHHHHHHc-CCCCcHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCChhHH
Q 043758 738 VGRMDDAYDHFQMMKRE-GLRPNQV-TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLC-QAGRLSHV 814 (918)
Q Consensus 738 ~g~~~~A~~~~~~m~~~-~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A 814 (918)
..-.+.++.-+++..+. .++||.. +...+..+-...|++..|..--+.... ..|....|-.|.+.-. ..|+-.++
T Consensus 305 ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~v 382 (531)
T COG3898 305 ARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKV 382 (531)
T ss_pred hcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHH
Confidence 44444455444443321 2556543 556667777788888888877766655 5677777777777654 44888888
Q ss_pred HHHHHHHHhCCCCC
Q 043758 815 FSVFYSMHKRGFVP 828 (918)
Q Consensus 815 ~~~~~~~~~~~~~p 828 (918)
...+.+..+..-.|
T Consensus 383 R~wlAqav~APrdP 396 (531)
T COG3898 383 RQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHHHHhcCCCCC
Confidence 88888887654334
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0067 Score=52.78 Aligned_cols=134 Identities=13% Similarity=0.095 Sum_probs=104.9
Q ss_pred CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC---CHHH
Q 043758 756 LRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP---KKAT 832 (918)
Q Consensus 756 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~ 832 (918)
.-|+...--.|..+....|+..+|...|++...--+--|....-.+..+....++...|...++.+.+.. | ++.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 3566666667888889999999999999988875555577888888888888999999999998887642 2 2234
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 833 YEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 833 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 893 (918)
.-.+..+|...|++.+|+..++.++.. -|++......+..+.++|+..+|..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444556778889999999999988875 78888888888999999988887766655544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0018 Score=66.79 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=70.1
Q ss_pred CCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcC-CCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHH
Q 043758 129 DLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKK-GLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYT 207 (918)
Q Consensus 129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 207 (918)
+.+......++..+....+++.+..++-+.+... ....-..+..++++.|.+.|..+.+..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3444455555666666666666666666655410 111223445566666666666666666666666666666666666
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 043758 208 SLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKM 251 (918)
Q Consensus 208 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 251 (918)
.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666655544444445555444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.088 Score=52.50 Aligned_cols=270 Identities=14% Similarity=0.047 Sum_probs=159.7
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHH
Q 043758 481 CKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEAC 560 (918)
Q Consensus 481 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 560 (918)
.+..++..|+..+...++..+. +..-|..-...+...+++++|.--.+.-.+.. +-........-.++...++..+|.
T Consensus 60 yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHHH
Confidence 3456778888888888887555 56667777777888888888876665554421 011112222222333333333333
Q ss_pred HHHH------------HHH---hCCC-CCCchhHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043758 561 QLFE------------KMK---ENSV-QPGSYPYTAL-ISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRA 623 (918)
Q Consensus 561 ~~~~------------~~~---~~~~-~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 623 (918)
+.++ ... .... +|.-.++..+ ..++.-.|+.++|.++--...+.. ..+......-..++.-.
T Consensus 138 ~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 138 EKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYN 216 (486)
T ss_pred HHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccc
Confidence 2222 221 1111 2323344333 234556899999998888877653 22322222222345567
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhC
Q 043758 624 GEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSN 703 (918)
Q Consensus 624 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (918)
++.+.+...|++.+. ..|+.....++-..+-. ......-.+..++.
T Consensus 217 ~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~--------------------------------le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 217 DNADKAINHFQQALR--LDPDHQKSKSASMMPKK--------------------------------LEVKKERGNDAFKN 262 (486)
T ss_pred cchHHHHHHHhhhhc--cChhhhhHHhHhhhHHH--------------------------------HHHHHhhhhhHhhc
Confidence 788999999998874 55655544433222111 01122334566778
Q ss_pred CChhHHHHHHHHHHhcC---CCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHhcCCHHHH
Q 043758 704 GKKGTVQKIVLKVKDIE---FMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV-TFCILINGHIAAGEIDQA 779 (918)
Q Consensus 704 g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A 779 (918)
|++..|.+.+.+..... ..|+..+|-....+..+.|+..+|+.--+...+ +.|... .+..-..++...++|++|
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998776432 334566777777888889999999998888776 333221 223333456677889999
Q ss_pred HHHHHHHHhC
Q 043758 780 IGLFNQMNAD 789 (918)
Q Consensus 780 ~~~~~~~~~~ 789 (918)
++-|++..+.
T Consensus 341 V~d~~~a~q~ 350 (486)
T KOG0550|consen 341 VEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHhh
Confidence 9999888775
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0014 Score=56.03 Aligned_cols=96 Identities=19% Similarity=0.099 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCC---CcccHH
Q 043758 797 VYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK----KATYEHLLECFCANCLSIPAFNMFKEMIVHDHVP---CLSNCN 869 (918)
Q Consensus 797 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~ 869 (918)
++..++..+.+.|++++|.+.++.+.+. .|+ ...+..+..++.+.|++++|...++.+.... |. .+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHH
Confidence 3444555556666666666666665532 121 2234445555666666666666666665432 22 134566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 870 WLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 870 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.++.++.+.|++++|...++++.+..
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 66666666666666666666666654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.013 Score=58.78 Aligned_cols=61 Identities=11% Similarity=0.054 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCC-----CChh-hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCE-----PDSY-TCNTLIHGFFKMGLFDKGWVLYSQMSD 266 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 266 (918)
+..+...+.+.|++++|.++|++....... .+.. .|...+-++...|++..|...++....
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344445555555566666655555432211 1111 122222234445555555555555543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.012 Score=51.23 Aligned_cols=103 Identities=10% Similarity=-0.055 Sum_probs=52.5
Q ss_pred CChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHH
Q 043758 95 PIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSL 174 (918)
Q Consensus 95 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 174 (918)
|++.....+..++...|++.||...|++...--...|....-.+..+....++...|...++.+-+-....-+..+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 44444455555555566666666666555544344455555555555555555555555555554411111123333444
Q ss_pred HHHHhccCchHHHHHHHHHHHhC
Q 043758 175 FYALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 175 l~~~~~~g~~~~a~~~~~~~~~~ 197 (918)
.+.+...|+++.|+..|+...+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh
Confidence 45555555555555555555554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0024 Score=54.42 Aligned_cols=94 Identities=20% Similarity=0.170 Sum_probs=41.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHH
Q 043758 728 YNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN----QVTFCILINGHIAAGEIDQAIGLFNQMNADG--CVPDKTVYNTL 801 (918)
Q Consensus 728 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l 801 (918)
+..++..+.+.|++++|...|+.+.... |+ ...+..+..++.+.|++++|...|+.+.... .......+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3344444445555555555555554421 21 1123334444455555555555555544421 00112334444
Q ss_pred HHHHHHcCChhHHHHHHHHHHh
Q 043758 802 LKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
..++...|++++|...++++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHH
Confidence 4444455555555555554443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0036 Score=57.20 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=56.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH-------
Q 043758 73 VALGNIEDALRHFDRLISKNIVP--IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLC------- 143 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~------- 143 (918)
...|++++|+..|+.++...+.| ...+|..+..++...|++++|+..+++..... +....++..+...+.
T Consensus 46 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~ 124 (168)
T CHL00033 46 QSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICHYRGEQAI 124 (168)
T ss_pred HHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHH
Confidence 55677777777777776654332 23478888888889999999999998888664 334455666666666
Q ss_pred cCCChhHHHHHHHH
Q 043758 144 YKGFLDEVLEVVNI 157 (918)
Q Consensus 144 ~~g~~~~A~~~~~~ 157 (918)
..|+++.|+..+++
T Consensus 125 ~~g~~~~A~~~~~~ 138 (168)
T CHL00033 125 EQGDSEIAEAWFDQ 138 (168)
T ss_pred HcccHHHHHHHHHH
Confidence 55666544444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.002 Score=66.45 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=52.8
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHc--CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043758 724 NLYLYNDIFLLLCGVGRMDDAYDHFQMMKRE--GLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTL 801 (918)
Q Consensus 724 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 801 (918)
+.......++.+....+.+++..++.+.... ....-..|..++++.|...|..++++.+++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3344444444444444445555555444432 11011113334555555555555555555544444555555555555
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043758 802 LKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLE 838 (918)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 838 (918)
++.+.+.|++..|.++...|...+...+..|+.-.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~ 181 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALY 181 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 5555555555555555555444333334344333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0016 Score=67.38 Aligned_cols=86 Identities=8% Similarity=-0.126 Sum_probs=71.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
...|+++.|+..|+++++.++. +..+|..+..+|...|++++|+..+++++... +.+...|..+..+|...|++++|+
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 6778888888888888887754 66788888888888899999999998888775 456677888888888889999999
Q ss_pred HHHHHHHh
Q 043758 153 EVVNIMRK 160 (918)
Q Consensus 153 ~~~~~~~~ 160 (918)
..|+...+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 88888876
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0012 Score=62.61 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=52.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.+.+++++|+..|..+++.++. |++.|-.-..+|.+.|.++.|++-.+..+..+ +.-..+|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 5555666666666666655543 45555555555666666666665555555544 333445555666666666666666
Q ss_pred HHHHHHHhcCCCCCCcccH
Q 043758 153 EVVNIMRKKKGLVPALHPY 171 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~ 171 (918)
+.|.+.++ +.|+-.+|
T Consensus 170 ~aykKaLe---ldP~Ne~~ 185 (304)
T KOG0553|consen 170 EAYKKALE---LDPDNESY 185 (304)
T ss_pred HHHHhhhc---cCCCcHHH
Confidence 66655554 44554444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.17 Score=50.06 Aligned_cols=307 Identities=14% Similarity=0.076 Sum_probs=194.8
Q ss_pred HHHHHHHHH--cCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCHH--HHHHH
Q 043758 543 FTTMINGYL--QNRKPIEACQLFEKMKENSVQPGSYPYTALISGLV--KKGMVDLGCMYLDRMLADGFVPNVV--LYTAL 616 (918)
Q Consensus 543 ~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l 616 (918)
|..+-.++. -.|+-..|.++-.+..+. +..|...+..|+.+-. -.|+++.|.+-|+.|... |... -...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 444444443 357777787777665532 3456666666766643 479999999999999863 3322 23444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhh
Q 043758 617 INHFLRAGEFEFASRLENLMVTNQIEFD-LIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKST 695 (918)
Q Consensus 617 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (918)
.-...+.|+.+.|.+.-++.-.. .|. ...+.+.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~At-------------------------------------------- 194 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEK--APQLPWAARAT-------------------------------------------- 194 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHH--------------------------------------------
Confidence 44556789999888887776532 222 1222233
Q ss_pred hHHHHHhCCChhHHHHHHHHHHhcC-CCCChh--hHHHHHHHHH--c-cCChhHHHHHHHHHHHcCCCCcHHh-HHHHHH
Q 043758 696 AFSAVFSNGKKGTVQKIVLKVKDIE-FMPNLY--LYNDIFLLLC--G-VGRMDDAYDHFQMMKREGLRPNQVT-FCILIN 768 (918)
Q Consensus 696 ~~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~--~-~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~ 768 (918)
....+..|+++.++++++.-++.. +.++.. .--.|+.+-+ . ..+...|...-.+..+ +.||.+- --.-..
T Consensus 195 -Le~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAr 271 (531)
T COG3898 195 -LEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAAR 271 (531)
T ss_pred -HHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHH
Confidence 334455699999999998766443 233332 1112221111 1 1345555555555444 5677552 223456
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHccCCh
Q 043758 769 GHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKR-GFVPKKA-TYEHLLECFCANCLS 846 (918)
Q Consensus 769 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~ 846 (918)
++.+.|+..++-.+++.+-+.. |.+..+ ..|.+...-+.+..-+++..+. .++|+.. ..-.+..+-...|++
T Consensus 272 alf~d~~~rKg~~ilE~aWK~e--PHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 272 ALFRDGNLRKGSKILETAWKAE--PHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred HHHhccchhhhhhHHHHHHhcC--CChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence 7899999999999999998864 444432 3344444334455555544321 3567554 555566677888999
Q ss_pred hhHHHHHHHHHhCCCCCCcccHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCcccchhhhccc
Q 043758 847 IPAFNMFKEMIVHDHVPCLSNCNWLLNILCQE-KHFHEAQIVLDVMHKRGRLPCTSTRGFWRKHF 910 (918)
Q Consensus 847 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (918)
..|....+..... .|....|..|.++-... |+-.+++..+-+..+.-..|.++.-++..+.+
T Consensus 346 ~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~adg~vse~w 408 (531)
T COG3898 346 SAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWTADGVVSEAW 408 (531)
T ss_pred HHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcccccCcccccc
Confidence 9988888877664 77888899999988877 99999999999999888888777666655443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0011 Score=68.49 Aligned_cols=108 Identities=7% Similarity=-0.053 Sum_probs=86.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccC
Q 043758 766 LINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANC 844 (918)
Q Consensus 766 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~ 844 (918)
-...+...|++++|+..|+++++... -+...|..+..+|...|++++|+..++++.+ +.| +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 34567788999999999999998532 2567888888999999999999999999986 445 5567888888999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 043758 845 LSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQ 877 (918)
Q Consensus 845 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 877 (918)
++++|...+++++..+ |.+......+..+..+
T Consensus 85 ~~~eA~~~~~~al~l~-P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 85 EYQTAKAALEKGASLA-PGDSRFTKLIKECDEK 116 (356)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 9999999999999886 6677666665554333
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.22 Score=50.33 Aligned_cols=476 Identities=12% Similarity=0.047 Sum_probs=253.4
Q ss_pred HHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhC
Q 043758 118 DYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 197 (918)
.+=+++.+. |.|+..|..++.-+...+.+++..+++++|.. .++--..+|.-.+.+-....++..++.+|.++...
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~--pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSS--PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC--CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 444444433 66788888888888888888888888888864 45555566666676666678888888899888887
Q ss_pred CCCCChhhHHHHHHHHhcCC-----Ch-HHHHHHHHHHHh-cCCCCChh-hHHHHH---HHHHhcCChhH------HHHH
Q 043758 198 GFYVDKLMYTSLINGYCSNR-----NM-KMAMRLFFRMLK-TGCEPDSY-TCNTLI---HGFFKMGLFDK------GWVL 260 (918)
Q Consensus 198 ~~~~~~~~~~~li~~~~~~g-----~~-~~A~~~~~~m~~-~~~~p~~~-~~~~ll---~~~~~~g~~~~------a~~~ 260 (918)
.. +...|...+..--+.+ +- ....+.|+-... .++.|-.. .|+..+ ...-..|.+++ ....
T Consensus 106 ~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 SL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred hc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 44 4556665554322221 11 112223333222 23344332 333332 22223344432 2222
Q ss_pred HHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh--cCChhHHHHHHHHHHh--
Q 043758 261 YSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK--HNRLMEVDELYKKMLA-- 336 (918)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~-- 336 (918)
+.+|+.- -.|++++-+.=|+..... .|..+- +-++. +--+..|...++++..
T Consensus 184 Y~ral~t-----------------P~~nleklW~dy~~fE~e---~N~~Ta----rKfvge~sp~ym~ar~~yqe~~nlt 239 (660)
T COG5107 184 YMRALQT-----------------PMGNLEKLWKDYENFELE---LNKITA----RKFVGETSPIYMSARQRYQEIQNLT 239 (660)
T ss_pred HHHHHcC-----------------ccccHHHHHHHHHHHHHH---HHHHHH----HHHhcccCHHHHHHHHHHHHHHHHh
Confidence 2222211 123444443333322210 111110 00110 1113455566666543
Q ss_pred CCCCC----ChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCc
Q 043758 337 NRVAP----DHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLA 412 (918)
Q Consensus 337 ~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 412 (918)
.|... +..|++.+-+ ..+ ..-...+.--.+.+ +....+.+.+...-++.+...--+ ..
T Consensus 240 ~Gl~v~~~~~~Rt~nK~~r----~s~-S~WlNwIkwE~en~------------l~L~~~~~~qRi~y~~~q~~~y~~-~~ 301 (660)
T COG5107 240 RGLSVKNPINLRTANKAAR----TSD-SNWLNWIKWEMENG------------LKLGGRPHEQRIHYIHNQILDYFY-YA 301 (660)
T ss_pred ccccccCchhhhhhccccc----ccc-chhhhHhhHhhcCC------------cccCCCcHHHHHHHHHHHHHHHhh-hh
Confidence 23322 1223322111 000 00000010000111 111112223444444444443322 23
Q ss_pred hHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHH-HHHHhcCChhhHHHHHHHhhcc-----------cCc
Q 043758 413 NVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLI-KCFYQVGFLEGANAIVELMQDT-----------EGN 480 (918)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~-----------~~~ 480 (918)
+..|-..-..+...++-+.|+......... .|. +...+ ..+.-..+.+.....|+...+. ...
T Consensus 302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s 376 (660)
T COG5107 302 EEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESAS 376 (660)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhc
Confidence 355655556666777888887766544321 222 22222 2233344444444444443332 111
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHHHHHHHHHHHHcCCChHHH
Q 043758 481 CKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAG-IDPDEVFFTTMINGYLQNRKPIEA 559 (918)
Q Consensus 481 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A 559 (918)
...|+++...+++-+-.. .-+.+|...+....+..-++.|..+|.+..+.+ +.+++..+++++..++. |++.-|
T Consensus 377 ~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta 451 (660)
T COG5107 377 KVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATA 451 (660)
T ss_pred cccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchH
Confidence 112333222222222111 245677888888888889999999999999987 67888899999987765 688889
Q ss_pred HHHHHHHHhCCCCCCchhH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043758 560 CQLFEKMKENSVQPGSYPY-TALISGLVKKGMVDLGCMYLDRMLADGFVPN--VVLYTALINHFLRAGEFEFASRLENLM 636 (918)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 636 (918)
..+|+.-... -||...| ...+.-+...++-+.|..+|+..+.. +..+ ..+|..+++--..-|+...+..+-+++
T Consensus 452 ~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 452 YNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 9999886665 4565544 45667778899999999999966554 1222 568999999889999999888888888
Q ss_pred HHCCCCccHHHHHHHHHHHh
Q 043758 637 VTNQIEFDLIAYIALVSGVC 656 (918)
Q Consensus 637 ~~~~~~p~~~~~~~ll~~~~ 656 (918)
.. +-|...+.......|.
T Consensus 529 ~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 529 RE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HH--HcCcHhHHHHHHHHHh
Confidence 75 4455544444444443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00029 Score=42.53 Aligned_cols=29 Identities=38% Similarity=0.725 Sum_probs=15.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 043758 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTG 233 (918)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 233 (918)
+||+++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0033 Score=49.94 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=19.5
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCC-CCcHHhHHHHHHHHH
Q 043758 732 FLLLCGVGRMDDAYDHFQMMKREGL-RPNQVTFCILINGHI 771 (918)
Q Consensus 732 ~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~ 771 (918)
|..+...+++.....+|+.++..|+ .|+..+|+.++.+..
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~ 72 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA 72 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 3333344555555555555555555 455555555554443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0034 Score=50.89 Aligned_cols=93 Identities=15% Similarity=0.226 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHh
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCR 285 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (918)
+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445555555666666666666555432 1122344445555555555555555555555443 2233444455555555
Q ss_pred cCCHHHHHHHHHHHh
Q 043758 286 EGEVDAALMLLNSKV 300 (918)
Q Consensus 286 ~g~~~~A~~~~~~~~ 300 (918)
.|+.+.|...+....
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 555555555555544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.12 Score=51.61 Aligned_cols=271 Identities=16% Similarity=0.035 Sum_probs=168.6
Q ss_pred CchhHHhhhhh--hhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHH
Q 043758 60 QSQSALLLYQN--DFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNV 137 (918)
Q Consensus 60 ~~~~a~~~~~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 137 (918)
...+|.+..+. ...+..++..|+..+..+++..+. +...|..-+..+...|++++|.--.+.-++.. +-....+..
T Consensus 45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r 122 (486)
T KOG0550|consen 45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLR 122 (486)
T ss_pred HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccc
Confidence 34455555543 337778899999999999988765 46677777778888899999988777665443 111222333
Q ss_pred HHHHHHcCCChhHHHHHHH---------------HHHhcCCCCCCcccHHHH-HHHHhccCchHHHHHHHHHHHhCCCCC
Q 043758 138 LIDGLCYKGFLDEVLEVVN---------------IMRKKKGLVPALHPYKSL-FYALCKNIRTVEAESFAREMESQGFYV 201 (918)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~---------------~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~ 201 (918)
....+...++..+|.+.++ .+..-..-+|....+..+ ..++.-.|++++|.++--.+.+...
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-- 200 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-- 200 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc--
Confidence 3333333333333333222 111101111222222222 2456677999999988888877632
Q ss_pred ChhhHHHHHH--HHhcCCChHHHHHHHHHHHhcCCCCChhhH---HHH----------HHHHHhcCChhHHHHHHHHHHh
Q 043758 202 DKLMYTSLIN--GYCSNRNMKMAMRLFFRMLKTGCEPDSYTC---NTL----------IHGFFKMGLFDKGWVLYSQMSD 266 (918)
Q Consensus 202 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~l----------l~~~~~~g~~~~a~~~~~~~~~ 266 (918)
...+..+++ ++.-.++.+.|..-|++.+.. .|+-..- ... .+-..+.|++..|.+.|.+.+.
T Consensus 201 -~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 201 -TNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred -chhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 223333443 445678899999999998865 3443321 111 2234478999999999999987
Q ss_pred CC---CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 267 WG---FQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANR 338 (918)
Q Consensus 267 ~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (918)
.. ..++...|.....+..+.|+..+|+.--++....+ +.=...+..-..++...+++++|.+-|++..+..
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 63 44566677778888889999999999888887643 1111223333456666788999999998887653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.01 Score=56.91 Aligned_cols=100 Identities=12% Similarity=0.126 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---ChhhHHHHHHHHHhCCCCCCcccHHH
Q 043758 794 DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANC---LSIPAFNMFKEMIVHDHVPCLSNCNW 870 (918)
Q Consensus 794 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~ 870 (918)
|...|..|..+|...|+...|..-|.+..+. ..++...+..+..++..+. ...++..++++++..+ |-|.++...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 6788888999999999999999888888763 2345566666666655444 3667888999988887 888888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 871 LLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 871 l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
|+..+...|++.+|...++.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 9999999999999999999888876
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0042 Score=61.09 Aligned_cols=134 Identities=13% Similarity=0.059 Sum_probs=89.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH----hCCCC-CCHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNA----DGCVP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMH----KRGFV-PKKA 831 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-p~~~ 831 (918)
.|..|...|.-.|+++.|+..-+.-+. -|-.. ....+..+..++.-.|+++.|.+.++... +.|-+ ...-
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 566677777777888888865443222 13222 23567778888888899999988887654 22222 1223
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHhC----C-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 832 TYEHLLECFCANCLSIPAFNMFKEMIVH----D-HVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 832 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
...+|..+|.-.+++++|+.+..+-+.. + ..-...+++.|+.+|...|..++|....+.-++..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4556777777777888888877664321 1 12236778899999999999999988877766543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00043 Score=41.78 Aligned_cols=29 Identities=28% Similarity=0.674 Sum_probs=15.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMMKREG 755 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 755 (918)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.012 Score=51.21 Aligned_cols=91 Identities=8% Similarity=-0.042 Sum_probs=61.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 043758 801 LLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKH 880 (918)
Q Consensus 801 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (918)
...-+...|++++|..+|.-+.-.+ .-+..-|..|..++-..+++++|+..+......+ +.|+..+.+.+.+|...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 3344556777777777777665421 1244455666666677777777777777776666 6677777777777777777
Q ss_pred HHHHHHHHHHHHh
Q 043758 881 FHEAQIVLDVMHK 893 (918)
Q Consensus 881 ~~~A~~~~~~~~~ 893 (918)
.+.|+..++...+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777666
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0067 Score=60.47 Aligned_cols=130 Identities=11% Similarity=-0.005 Sum_probs=78.6
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc-CCChhHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY-KGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYA 177 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~ 177 (918)
+|..+++...+.+..+.|..+|.++...+ ..+..+|...+..-.. .++.+.|..+|+...+ .++.+...|...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 56677777777777777777777776433 2333444444444223 4555557777777765 245556666677777
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDK---LMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
+...++.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777665 22121 36777777666777777777777776654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.005 Score=48.91 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=46.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHHhCCCCccHhhHHH
Q 043758 208 SLINGYCSNRNMKMAMRLFFRMLKTGC-EPDSYTCNTLIHGFFKMG--------LFDKGWVLYSQMSDWGFQPNMVTDLI 278 (918)
Q Consensus 208 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (918)
..|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555555777777777777777777 677777777777655432 12234455555555555666666665
Q ss_pred HHHHHH
Q 043758 279 MISNYC 284 (918)
Q Consensus 279 l~~~~~ 284 (918)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.007 Score=60.33 Aligned_cols=130 Identities=15% Similarity=0.216 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-HHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 043758 506 AIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMING-YLQNRKPIEACQLFEKMKENSVQPGSYPYTALISG 584 (918)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (918)
.+|-.++...-+.+..+.|..+|.++.+.+ ..+..+|...... |...++.+.|.++|+...+. +..+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888899999999999999999998653 2344445544444 44467788899999999876 45677888899999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043758 585 LVKKGMVDLGCMYLDRMLADGFVP---NVVLYTALINHFLRAGEFEFASRLENLMVT 638 (918)
Q Consensus 585 ~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 638 (918)
+.+.|+.+.|..+|++.+.. +.+ ....|..++..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999876 232 235999999999999999999999999886
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00091 Score=49.32 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=44.6
Q ss_pred HHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 837 LECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 837 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
...+...|++++|...++++++.. |.+..++..++.++...|++++|...++++.+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 345677888888888888888776 6678888888888888888888888888876654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.016 Score=53.15 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN--QVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTLL 802 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 802 (918)
..+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|++++|+..+++..+. .| +...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 4455566666666666666666666655322221 234555555666666666666666666553 22 334445555
Q ss_pred HHHHHcCChhHHH
Q 043758 803 KGLCQAGRLSHVF 815 (918)
Q Consensus 803 ~~~~~~g~~~~A~ 815 (918)
.++...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 5555555544433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.083 Score=49.86 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=35.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC
Q 043758 73 VALGNIEDALRHFDRLISKNIVP--IKLACVSILRGLFAEEKFLEAFDYFIKICNAG 127 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 127 (918)
...|++++|...|+.+....+.. .+.+...++.++.+.|++++|+..+++..+..
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 67777888888888777654331 23355567777788888888888888877654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.015 Score=63.06 Aligned_cols=135 Identities=10% Similarity=-0.024 Sum_probs=79.0
Q ss_pred CCcchhHHHHHHHHHc--C---CChhHHHHHHHHHHhcCCCCCCc-ccHHHHHHHHhcc--------CchHHHHHHHHHH
Q 043758 129 DLNCWSYNVLIDGLCY--K---GFLDEVLEVVNIMRKKKGLVPAL-HPYKSLFYALCKN--------IRTVEAESFAREM 194 (918)
Q Consensus 129 ~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~--------g~~~~a~~~~~~~ 194 (918)
+.|...|...+++... . ++...|+.+|++..+ ..|+. ..|..+..++... .+...+.+..++.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4455555555555332 1 225566666666665 33442 2233222222111 1233444444443
Q ss_pred HhC-CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 195 ESQ-GFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWG 268 (918)
Q Consensus 195 ~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 268 (918)
... ..+.+...|.++.-.+...|++++|...+++.... .|+...|..+...+...|+.++|.+.+++....+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 332 12235566777766666778888888888888776 3677778888888888888888888888877653
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.01 Score=49.40 Aligned_cols=59 Identities=17% Similarity=0.077 Sum_probs=31.3
Q ss_pred HHHHHhhchhcHHHHHHHHHHHhhcCCCCc--chhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 102 SILRGLFAEEKFLEAFDYFIKICNAGVDLN--CWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 102 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
.+..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|+.+++....
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555666666666666555553322 22344455555556666666666655554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0048 Score=60.67 Aligned_cols=133 Identities=14% Similarity=0.050 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHH----HcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCH
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMK----REGLRP-NQVTFCILINGHIAAGEIDQAIGLFNQMNAD----GC-VPDK 795 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~ 795 (918)
.+|-.|...|.-.|+++.|+..-+.-+ +-|-+. ....+..+..++.-.|+++.|.+.|+..... |- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 466677777777788998887654322 222111 1236777888899999999999988875442 21 1234
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHh
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHK----R-GFVPKKATYEHLLECFCANCLSIPAFNMFKEMIV 858 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 858 (918)
.+..+|..+|.-..++++|+.++.+=.. . ...-....+++|..++...|..++|+.+.+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5556788888888899999998776432 1 1233445788888899999999999888877653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0064 Score=55.76 Aligned_cols=90 Identities=8% Similarity=0.035 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVPD--KTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLE 838 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 838 (918)
.+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+ ..| +...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 456666667777888888888887776422221 35666777777777777777777777765 334 3334455555
Q ss_pred HHHccCChhhHHHHH
Q 043758 839 CFCANCLSIPAFNMF 853 (918)
Q Consensus 839 ~~~~~~~~~~A~~~~ 853 (918)
++...|+...+...+
T Consensus 115 ~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 115 IYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHcCChHhHhhCH
Confidence 666666655444333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0097 Score=49.57 Aligned_cols=91 Identities=19% Similarity=0.216 Sum_probs=64.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---HHHHHH-HHHH
Q 043758 766 LINGHIAAGEIDQAIGLFNQMNADGCVPD--KTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK---KATYEH-LLEC 839 (918)
Q Consensus 766 li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~-l~~~ 839 (918)
+..++-..|+.++|+.+|++....|...+ ...+-.+...|...|++++|..++++.... .|+ ...... +.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 45567778888888888888888776654 356667777888888888888888887753 243 222222 2336
Q ss_pred HHccCChhhHHHHHHHHHh
Q 043758 840 FCANCLSIPAFNMFKEMIV 858 (918)
Q Consensus 840 ~~~~~~~~~A~~~~~~~~~ 858 (918)
+...|+.++|+..+-..+.
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7788888888888877664
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.55 Score=50.27 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 043758 503 PSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKM 566 (918)
Q Consensus 503 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 566 (918)
-+....-.+..++.+.|.-++|.+.|-+.. .|- ..+..|...++|.+|.++-+..
T Consensus 850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 850 EDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 355666677778888888888777664432 122 2345666777777777766554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00096 Score=49.95 Aligned_cols=64 Identities=14% Similarity=0.010 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-CHHHHHHHHHHHHhC
Q 043758 830 KATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEK-HFHEAQIVLDVMHKR 894 (918)
Q Consensus 830 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 894 (918)
..+|..+...+...|++++|+..+++.++.+ |.++.++..++.+|...| ++++|...+++..+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4566667777788888888888888887776 777788888888888888 688888888777654
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.075 Score=49.40 Aligned_cols=240 Identities=10% Similarity=0.011 Sum_probs=148.0
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH-cCC-ChhHHHHHHHHHHhcCCCCCCcccHHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLC-YKG-FLDEVLEVVNIMRKKKGLVPALHPYKS 173 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~ 173 (918)
....|+--+.++.+...+++|..-++...+.+ .||.. |...=..|- +.| .+.-+.+++-.... ..-| ..+++
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~--~~lg--npqes 141 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQ--QYLG--NPQES 141 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHH--HhcC--CcHHH
Confidence 34577777888899999999988777766554 33321 111111111 222 23334443333222 1112 23455
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCC-CC--------ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 043758 174 LFYALCKNIRTVEAESFAREMESQGF-YV--------DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTL 244 (918)
Q Consensus 174 ll~~~~~~g~~~~a~~~~~~~~~~~~-~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 244 (918)
+.+.+.-..-++.- ....+.... .. -...-+.+++.+.-.|.+.-....+.+.++...+.+......|
T Consensus 142 LdRl~~L~~~V~~i---i~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 142 LDRLHKLKTVVSKI---LANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHH---HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 55554433222222 222222211 00 1233456677777788999999999999987656667778888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHH-----HHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHH
Q 043758 245 IHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLI-----MISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALY 319 (918)
Q Consensus 245 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 319 (918)
.+.-.+.|+.+.|...|+...+..-..|..+.+. ....|...+++..|...|.+++..+ +.|...-|.-.-+..
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHH
Confidence 8888899999999999998766533444444433 3445677789999999999888776 456666666666666
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHH
Q 043758 320 KHNRLMEVDELYKKMLANRVAPDHLLSF 347 (918)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 347 (918)
-.|+...|++.++.|++. .|...+-.
T Consensus 298 Ylg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 679999999999999875 44444333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.008 Score=53.40 Aligned_cols=121 Identities=20% Similarity=0.199 Sum_probs=77.6
Q ss_pred HHhcCCHHHHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 043758 770 HIAAGEIDQAIGLFNQMNAD--G-CVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLS 846 (918)
Q Consensus 770 ~~~~g~~~~A~~~~~~~~~~--~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 846 (918)
....|+.+.+...++++... | +-|+...+.. .......++++. ......++..+...|++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W----------~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEW----------VEPERERLRELY-------LDALERLAEALLEAGDY 78 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTT----------HHHHHHHHHHHH-------HHHHHHHHHHHHHTT-H
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHH----------HHHHHHHHHHHH-------HHHHHHHHHHHHhccCH
Confidence 35567888888888888775 2 2222211011 111111222221 12455566677889999
Q ss_pred hhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCcccchhhhc
Q 043758 847 IPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHK-----RGRLPCTSTRGFWRK 908 (918)
Q Consensus 847 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~~ 908 (918)
++|...+..++... |-|...|..++.+|...|+..+|.++|+++.+ .|+.|+..|..+.++
T Consensus 79 ~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~ 144 (146)
T PF03704_consen 79 EEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYRE 144 (146)
T ss_dssp HHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHH
Confidence 99999999999887 88888999999999999999999999988743 599999988877665
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.039 Score=53.07 Aligned_cols=128 Identities=13% Similarity=0.027 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChhHHHHHHH
Q 043758 186 EAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMG---LFDKGWVLYS 262 (918)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~ 262 (918)
....-++.-...++. |...|-.|..+|...|++..|...|.+..+.. .++...+..+..++.... ...++..+|+
T Consensus 140 ~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 140 ALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 333444455555555 89999999999999999999999999998762 344556666666554332 3467889999
Q ss_pred HHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHH
Q 043758 263 QMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDAL 318 (918)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 318 (918)
+++... +.|..+...|...+...|++.+|...++.|.+.. |....+..+|..-
T Consensus 218 ~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~~ 270 (287)
T COG4235 218 QALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIERS 270 (287)
T ss_pred HHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHHH
Confidence 999876 5567777778888999999999999999999875 5555666666543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.081 Score=49.19 Aligned_cols=61 Identities=10% Similarity=-0.106 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHh
Q 043758 135 YNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMES 196 (918)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 196 (918)
.++++..+.-.+.+.-...++..+++ ..-+.++.....+.+.-.+.|+.+.|...|++..+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444444444444444444554444 22223333334444444445555555555554444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0051 Score=56.19 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVP--DKTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
.+..+...+...|++++|+..|++.......| ...+|..+..++...|++++|+..+++..+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555566666666666665431111 123455555556666666666666655553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.12 Score=50.20 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 278 IMISNYCREGEVDAALMLLNSKVSSN--LAPSVHCYTVLIDALYKHNRLMEVDELYKKML 335 (918)
Q Consensus 278 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (918)
.+...|.+.|.+..|..-|+.+.+.= .+....+...++.+|...|..++|......+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 35566778888888888888777652 12223345567778888888888877765553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0075 Score=57.34 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=95.0
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 043758 733 LLLCGVGRMDDAYDHFQMMKREGLRP-NQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPD-KTVYNTLLKGLCQAGR 810 (918)
Q Consensus 733 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 810 (918)
.-..+.+++.+|+..|.+.++ +.| |.+-|..-..+|.+.|.++.|++-.+..+. +.|. ..+|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 456778999999999999998 455 555667777889999999999999998887 4454 4789999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHccCChh---hHHHHHHHHHhCCCCCCcc
Q 043758 811 LSHVFSVFYSMHKRGFVPKKATYEHLLE-CFCANCLSI---PAFNMFKEMIVHDHVPCLS 866 (918)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~---~A~~~~~~~~~~~~~~~~~ 866 (918)
+++|++.|++.++ +.|+..+|..=+. +--+.+... .+....+-....|..|+..
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 9999999999885 7898888776655 333333333 3344444444455445533
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.032 Score=60.57 Aligned_cols=136 Identities=8% Similarity=-0.001 Sum_probs=64.4
Q ss_pred CCCCChhhHHHHHHHHHccC-----ChhHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHhc--------CCHHHHHHHHHH
Q 043758 720 EFMPNLYLYNDIFLLLCGVG-----RMDDAYDHFQMMKREGLRPNQV-TFCILINGHIAA--------GEIDQAIGLFNQ 785 (918)
Q Consensus 720 ~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~--------g~~~~A~~~~~~ 785 (918)
..+.+...|...+.+..... ....|..+|++.++ ..|+.. .+..+..++... +++..+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 33456666666665544322 25567777777776 355542 333332222211 112222233332
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhC
Q 043758 786 MNAD-GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 786 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
.... ....++..|..+.......|++++|...+++..+ +.|+...|..+...+...|+.++|...++++...
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2221 1222334444444444445555555555555554 3345445555555555555555555555555544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.014 Score=52.98 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=63.4
Q ss_pred CCChhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcc
Q 043758 235 EPDSYTCNTLIHGFFK-----MGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVH 309 (918)
Q Consensus 235 ~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 309 (918)
..+..+|..++..+.+ .|..+-....++.|.+.|+.-|..+|+.|++.+=+ |.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv------------------- 103 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV------------------- 103 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-------------------
Confidence 3466677777776653 35666666777778888888888888888777643 2111
Q ss_pred hHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCcc
Q 043758 310 CYTVLIDALYK--HNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTE 358 (918)
Q Consensus 310 ~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 358 (918)
=..++++-.. -.+-+-|++++++|...|+-||..|+..++..+.+.+.
T Consensus 104 -p~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 104 -PRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -cccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111111 12344567777777777777777777777777766554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.63 Score=47.40 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=49.0
Q ss_pred HHHcCCCCcH----HhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 043758 751 MKREGLRPNQ----VTFCILING--HIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKR 824 (918)
Q Consensus 751 m~~~~~~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (918)
+.+.|++|-. ..-|.|.+| +...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++..+
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L--- 521 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL--- 521 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC---
Confidence 3444555432 234555554 3466777777655444444 6677777777777777777778887777663
Q ss_pred CCCCCHHHHHHHH
Q 043758 825 GFVPKKATYEHLL 837 (918)
Q Consensus 825 ~~~p~~~~~~~l~ 837 (918)
+|+..+++.-+
T Consensus 522 --P~n~~~~dskv 532 (549)
T PF07079_consen 522 --PPNERMRDSKV 532 (549)
T ss_pred --CCchhhHHHHH
Confidence 56666665543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.003 Score=47.05 Aligned_cols=52 Identities=19% Similarity=0.065 Sum_probs=29.5
Q ss_pred ccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 180 KNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 180 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
+.|++++|...|+++.+..+. +...+..+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666666666666555433 5555555666666666666666666665554
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0046 Score=46.08 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=34.5
Q ss_pred hhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhh
Q 043758 3 LINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQN 70 (918)
Q Consensus 3 ~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~ 70 (918)
|+.+|++.+|...|+.++...|+ +...+..+..++.+.|++++|...+.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~------------------~~~~~~~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD------------------NPEARLLLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT------------------SHHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred ChhccCHHHHHHHHHHHHHHCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 57899999999999999988887 454555666777444444444444333
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0033 Score=47.68 Aligned_cols=58 Identities=12% Similarity=-0.044 Sum_probs=47.6
Q ss_pred HHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043758 838 ECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGR 896 (918)
Q Consensus 838 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 896 (918)
..+.+.+++++|.+.++.++..+ |.++..+..++.+|.+.|++++|.+.++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45677888888888888888876 77888888888888888888888888888887663
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0047 Score=45.44 Aligned_cols=57 Identities=16% Similarity=-0.031 Sum_probs=34.6
Q ss_pred HHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 175 FYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 175 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
...+.+.|++++|...|+++.+..+. +...+..+..++...|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455666666666666666666433 5556666666666666666666666666554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0038 Score=46.67 Aligned_cols=63 Identities=22% Similarity=0.163 Sum_probs=41.8
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCC-ChhHHHHHHHHHHh
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKG-FLDEVLEVVNIMRK 160 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 160 (918)
+..|..+...+...|++++|+..|++.++.. +.+...|..+..++...| ++++|++.++..++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4456666666777777777777777766665 445666666666676666 56777777666654
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.81 Score=46.28 Aligned_cols=109 Identities=17% Similarity=0.098 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFC 841 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 841 (918)
+.+..|.-+...|+...|.++..+.. + |+...|...+.+|+..++|++-..+... +-++..|.-++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 45555666677777777776655542 2 6777788888888888888776665432 122356777777777
Q ss_pred ccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 842 ANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDV 890 (918)
Q Consensus 842 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 890 (918)
+.|+..+|..++.++ + +...+..|.+.|+|.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 788888887777762 1 24567777888888888766443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.02 Score=52.05 Aligned_cols=110 Identities=20% Similarity=0.269 Sum_probs=74.0
Q ss_pred CCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043758 445 RPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEA 524 (918)
Q Consensus 445 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 524 (918)
..+..+|..++..+.+.. -.+.|.++-....+..|.+.|+..|..+|+.|++++=+ |.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~-----------------~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-- 103 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRD-----------------VRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-- 103 (228)
T ss_pred cccHHHHHHHHHHHHhcC-----------------CCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc--
Confidence 456677777777776553 13678888888899999999999999999999988765 3321
Q ss_pred HHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCC
Q 043758 525 EDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGM 590 (918)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (918)
|......... ---.+-+-|++++++|...|+.||..++..+++.+++.+.
T Consensus 104 -------------p~n~fQ~~F~---hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 104 -------------PRNFFQAEFM---HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -------------cccHHHHHhc---cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111110 0112445677788888888888888888877777766543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.032 Score=48.52 Aligned_cols=86 Identities=8% Similarity=-0.007 Sum_probs=68.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
...|++++|..+|.-+...++. ++.-|..|..++...+++++|+..|......+ .-|+..+......+...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 6788888888888888776654 56677888888888899999999988776655 356666777778888888888888
Q ss_pred HHHHHHHh
Q 043758 153 EVVNIMRK 160 (918)
Q Consensus 153 ~~~~~~~~ 160 (918)
..|+....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 88888876
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.81 Score=43.30 Aligned_cols=184 Identities=15% Similarity=0.158 Sum_probs=100.2
Q ss_pred hHHhhhhhhh--HhcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHH
Q 043758 63 SALLLYQNDF--VALGNIEDALRHFDRLISKNIV--PIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVL 138 (918)
Q Consensus 63 ~a~~~~~~~~--~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 138 (918)
.+.++|.+.+ ...|++++|.+.|+.+..+.+. -...+...++.++.+.+++++|+...++............|...
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 4666776666 8889999999999999877533 13446667778888999999999999988876544333455555
Q ss_pred HHHHHc-------CCChhHHHHHHHHHHhc-CCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 043758 139 IDGLCY-------KGFLDEVLEVVNIMRKK-KGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLI 210 (918)
Q Consensus 139 ~~~~~~-------~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 210 (918)
|.+++. ..|...+.+.+..+.+- ...|.+..+-. |..-...+... =...=-.+.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~d--------------A~~~i~~~~d~----LA~~Em~Ia 174 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPD--------------AKARIVKLNDA----LAGHEMAIA 174 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhh--------------HHHHHHHHHHH----HHHHHHHHH
Confidence 555542 22333333333332220 01221111111 11111111100 000011344
Q ss_pred HHHhcCCChHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 211 NGYCSNRNMKMAMRLFFRMLKTGCEPDS---YTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
+.|.+.|.+..|..-+++|.+. .+-+. ..+-.+..+|...|-.++|...-+-+.
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 5667777777777777777765 12111 234445556666666666665544443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.22 Score=52.62 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHH
Q 043758 240 TCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALY 319 (918)
Q Consensus 240 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 319 (918)
+...+..-+.+...+..|.++|..|-.. .++++.+...+++++|..+-+..++- .|| +|..-.+-++
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaqwLA 815 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQWLA 815 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHHHhh
Confidence 3444444444555666666666665321 24556666677777776666665542 122 2333344444
Q ss_pred hcCChhHHHHHH
Q 043758 320 KHNRLMEVDELY 331 (918)
Q Consensus 320 ~~g~~~~a~~~~ 331 (918)
...++++|.+.|
T Consensus 816 E~DrFeEAqkAf 827 (1081)
T KOG1538|consen 816 ENDRFEEAQKAF 827 (1081)
T ss_pred hhhhHHHHHHHH
Confidence 455555554443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.27 Score=46.35 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=24.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChh
Q 043758 766 LINGHIAAGEIDQAIGLFNQMNAD--GCVPDKTVYNTLLKGLCQAGRLS 812 (918)
Q Consensus 766 li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~ 812 (918)
+..-|.+.|.+..|..-++.+++. +.+........++.+|.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 444566666666666666666665 11112244455556666666555
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.4 Score=44.78 Aligned_cols=130 Identities=17% Similarity=0.286 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHhcC-CCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhH-HHHHHHHHhcCCHHHHHHHH
Q 043758 706 KGTVQKIVLKVKDIE-FMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTF-CILINGHIAAGEIDQAIGLF 783 (918)
Q Consensus 706 ~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~ 783 (918)
++.|..+|.++.+.+ ..+++..+++++..++. |+...|.++|+--... -||...| +-.+.-+...++-+.|..+|
T Consensus 413 l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLF 489 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALF 489 (660)
T ss_pred HHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHH
Confidence 345566666666666 45677777777776654 5677788887765442 3454443 33444556778888888888
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043758 784 NQMNADGCVPD--KTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFC 841 (918)
Q Consensus 784 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 841 (918)
+..+.. +.-+ ...|..+|.--..-|++..+..+=++|.+ +-|...+...+.+-|.
T Consensus 490 etsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 490 ETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 866654 2222 46788888887888888888888888875 4566655555444333
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.67 Score=47.25 Aligned_cols=169 Identities=8% Similarity=0.005 Sum_probs=95.6
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCC--CC-cHHhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMMKREGL--RP-NQVTFCILINGHIA---AGEIDQAIGLFNQMNADGCVPDKTVYNT 800 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p-~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 800 (918)
+...++-.|....+++.-+++.+.+...-. -+ ....-....-|+.+ .|+.++|++++..+....-.+++++|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 334555567778888888888888876310 01 11112233445556 7888888888888665555567777777
Q ss_pred HHHHHHHc---------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-hhhH---HHHH---HHHH-hCCCCC
Q 043758 801 LLKGLCQA---------GRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCL-SIPA---FNMF---KEMI-VHDHVP 863 (918)
Q Consensus 801 l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~A---~~~~---~~~~-~~~~~~ 863 (918)
+...|... ...++|+..+.+.-+ +.|+...=-.++..+...|. ++.. .++. ..+. +.|...
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 77766421 246677777776654 34554432223333333333 2221 1111 1222 333222
Q ss_pred Cccc---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043758 864 CLSN---CNWLLNILCQEKHFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 864 ~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 897 (918)
.... +.+++.+..-.|++++|.+.+++|.+....
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 2233 345667777888888888888888877533
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.037 Score=54.00 Aligned_cols=95 Identities=16% Similarity=0.075 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCC-CHHHHHHH
Q 043758 763 FCILINGHIAAGEIDQAIGLFNQMNADGCVPD----KTVYNTLLKGLCQAGRLSHVFSVFYSMHKR-GFVP-KKATYEHL 836 (918)
Q Consensus 763 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l 836 (918)
|...+....+.|++++|+..|+.+++. .|+ +..+..+..+|...|++++|...|+.+.+. +-.| ....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444333334456666666666666654 222 245555666666666666666666666532 0011 12233333
Q ss_pred HHHHHccCChhhHHHHHHHHHhC
Q 043758 837 LECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 837 ~~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
..++...|+.++|...++++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455556666666666655543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.07 Score=52.13 Aligned_cols=97 Identities=19% Similarity=0.155 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHH
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQ----VTFCILINGHIAAGEIDQAIGLFNQMNAD--GCVPDKTVYN 799 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~ 799 (918)
..|......+.+.|++++|+..|+.+++. .|+. ..+..+..+|...|++++|...|+.+.+. +-......+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555556679999999999999885 3543 35667888899999999999999999875 1122346666
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhC
Q 043758 800 TLLKGLCQAGRLSHVFSVFYSMHKR 824 (918)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (918)
.+..++...|+.++|..++++..+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6778888999999999999998863
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.03 E-value=2 Score=43.49 Aligned_cols=113 Identities=10% Similarity=0.142 Sum_probs=74.8
Q ss_pred cccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 043758 689 VTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILIN 768 (918)
Q Consensus 689 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 768 (918)
...++...+..+...|....|.++-.+.+ .|+-.-|...+.+|+..++|++-..+-.. +-+++-|..++.
T Consensus 176 ~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~ 245 (319)
T PF04840_consen 176 VGLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVE 245 (319)
T ss_pred hcCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHH
Confidence 33455555666666777777777766655 57777777888888888888776654322 123467777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043758 769 GHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSM 821 (918)
Q Consensus 769 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 821 (918)
+|.+.|+..+|..+...+ + + ..-+..|.++|++.+|.+.--+.
T Consensus 246 ~~~~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888887777776652 1 1 34556777788887777664443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.06 Score=43.94 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=50.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHccCC
Q 043758 769 GHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLE---CFCANCL 845 (918)
Q Consensus 769 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~~~ 845 (918)
+.+..|+.+.|++.|.+.+.. .+-....||.-..++.-+|+.++|++-+++..+..-.-+.....+.+. .|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456667777777777776663 222456677777777777777777777776665321222222222221 3444555
Q ss_pred hhhHHHHHHHHHhCC
Q 043758 846 SIPAFNMFKEMIVHD 860 (918)
Q Consensus 846 ~~~A~~~~~~~~~~~ 860 (918)
.+.|..-|+.....|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555555544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.23 Score=44.02 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh-----CCCCCCchh
Q 043758 507 IYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKE-----NSVQPGSYP 577 (918)
Q Consensus 507 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~ 577 (918)
+...++..+...|+++.|..+.+.+.... +.+...|..+|.+|...|+...|.+.|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44455556666777777777777776653 44566677777777777777777777766642 366665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.28 Score=45.29 Aligned_cols=205 Identities=11% Similarity=0.016 Sum_probs=105.9
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYAL 178 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~ 178 (918)
.|.....+|....+++.|-..+.+..+.. ..|...| ... .-++.|.-+.+++.+ ++--+..|..-..+|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslf-hAA------KayEqaamLake~~k---lsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLF-HAA------KAYEQAAMLAKELSK---LSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHH-HHH------HHHHHHHHHHHHHHH---hHHHHHHHHHHHHHH
Confidence 34444445566667777776666655321 2222222 111 122333333344332 222233444445567
Q ss_pred hccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc---C--CCCChhhHHHHHHHHHhcCC
Q 043758 179 CKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT---G--CEPDSYTCNTLIHGFFKMGL 253 (918)
Q Consensus 179 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~--~~p~~~~~~~ll~~~~~~g~ 253 (918)
.++|.++.|-..+++.-+. ..+-++++|+++|++.... + .+.-...|..+-+.+++...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7777777777666654442 2334556666666654321 1 01112234555566777777
Q ss_pred hhHHHHHHHHHHhC----CCCccH-hhHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCcchHHHHHHHHHhcCChh
Q 043758 254 FDKGWVLYSQMSDW----GFQPNM-VTDLIMISNYCREGEVDAALMLLNSKVSS---NLAPSVHCYTVLIDALYKHNRLM 325 (918)
Q Consensus 254 ~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~ 325 (918)
+++|-..+.+-... .-.++. ..+.+.|-.|.-..++..|+..++.-.+. .-+.+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 77765555443221 111222 23555566677778889999988874432 2233455666677665 467777
Q ss_pred HHHHHH
Q 043758 326 EVDELY 331 (918)
Q Consensus 326 ~a~~~~ 331 (918)
++..++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 766654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.54 Score=49.83 Aligned_cols=89 Identities=15% Similarity=-0.008 Sum_probs=47.4
Q ss_pred HHHHHHcCCChhHHHHHHH------HHHhcCCCCC---CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHH
Q 043758 138 LIDGLCYKGFLDEVLEVVN------IMRKKKGLVP---ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTS 208 (918)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~------~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (918)
....+...|+..+|..+.- .+.. .+-.. +..+...+..-+.+...+.-|.++|..|-.. ..
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lid-I~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ks 778 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLID-IARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KS 778 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHH-HHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HH
Confidence 3445556677766665432 1221 11111 2223333333344455566677777665432 34
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCCCh
Q 043758 209 LINGYCSNRNMKMAMRLFFRMLKTGCEPDS 238 (918)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 238 (918)
++..+...+++.+|..+-++..+. .||+
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe~--~~dV 806 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPEF--KDDV 806 (1081)
T ss_pred HhhheeecccchHhHhhhhhCccc--cccc
Confidence 566677788888888887776653 4454
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.045 Score=41.34 Aligned_cols=53 Identities=11% Similarity=-0.050 Sum_probs=24.7
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (918)
|.+.+++++|.++++.+...++. ++..|......+...|++++|...|++..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444444444444332 444444444444444555555554444444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.84 E-value=4 Score=45.38 Aligned_cols=178 Identities=16% Similarity=0.097 Sum_probs=112.6
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHH----HHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNV----LIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSL 174 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 174 (918)
....-+..+.+...++-|+.+-+.- + .+..+... ...-+.+.|++++|...|-+-+. -+.| ..+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~-----s~V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEP-----SEV 403 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCCh-----HHH
Confidence 4456677778888888888776542 2 22223333 33445578899999888776653 1222 224
Q ss_pred HHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 043758 175 FYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLF 254 (918)
Q Consensus 175 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 254 (918)
+.-|....+..+-...++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 45556666777778888888888876 77778888999999998887776665443 2211 11244556667777777
Q ss_pred hHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043758 255 DKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKV 300 (918)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 300 (918)
++|..+-..... .......+ +-..|++++|.+.++.++
T Consensus 480 ~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 777665554432 22333333 345688888888887765
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.16 Score=41.57 Aligned_cols=96 Identities=16% Similarity=0.001 Sum_probs=70.7
Q ss_pred HHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcc---hhHHHHHH
Q 043758 64 ALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNC---WSYNVLID 140 (918)
Q Consensus 64 a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~ 140 (918)
++++-+-+++..|+++.|++.|.+.+..-+. .+.+||.-.+++.-+|+.++|++-+++.++..-+... ..|..-..
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 4455555668889999999999888876544 6678999999999999999999999888865423222 23444455
Q ss_pred HHHcCCChhHHHHHHHHHHh
Q 043758 141 GLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~~~ 160 (918)
.|...|+.+.|..=|+...+
T Consensus 124 lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HHHHhCchHHHHHhHHHHHH
Confidence 56677888888888887765
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=5.3 Score=45.13 Aligned_cols=340 Identities=8% Similarity=0.027 Sum_probs=170.0
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHH
Q 043758 482 KWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQ 561 (918)
Q Consensus 482 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 561 (918)
+.|+...+..+...+...-. .....|..+...+ ....+++....+++-... +.....-...+..+.+.+++.....
T Consensus 45 ~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~~--P~~~~Lr~~~l~~La~~~~w~~~~~ 120 (644)
T PRK11619 45 DNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANPTL--PPARSLQSRFVNELARREDWRGLLA 120 (644)
T ss_pred HCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCCCC--chHHHHHHHHHHHHHHccCHHHHHH
Confidence 44566666666655532211 1222232222211 122344444444433221 2222223334445556777776665
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043758 562 LFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQI 641 (918)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 641 (918)
++. . .+.+...-..+..+....|+.++|....+.+-..| ...+...+.++..+.+.|...... ++.+|..
T Consensus 121 ~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~--- 190 (644)
T PRK11619 121 FSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLA-YLERIRL--- 190 (644)
T ss_pred hcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHH-HHHHHHH---
Confidence 221 1 13344444666777888888887877777766555 334567777777777666544332 3333321
Q ss_pred CccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCC
Q 043758 642 EFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEF 721 (918)
Q Consensus 642 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 721 (918)
....|+...|..+...+.
T Consensus 191 ----------------------------------------------------------al~~~~~~lA~~l~~~l~---- 208 (644)
T PRK11619 191 ----------------------------------------------------------AMKAGNTGLVTYLAKQLP---- 208 (644)
T ss_pred ----------------------------------------------------------HHHCCCHHHHHHHHHhcC----
Confidence 112255555555554331
Q ss_pred CCC-hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHH--HHhcCCHHHHHHHHHHHHhC-CCCCCH--
Q 043758 722 MPN-LYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILING--HIAAGEIDQAIGLFNQMNAD-GCVPDK-- 795 (918)
Q Consensus 722 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~-~~~p~~-- 795 (918)
++ ......++..+.+ ...+...+.. +.|+...-..++.+ -....+.+.|..++..+... ++.++.
T Consensus 209 -~~~~~~a~a~~al~~~---p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~ 279 (644)
T PRK11619 209 -ADYQTIASALIKLQND---PNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQ 279 (644)
T ss_pred -hhHHHHHHHHHHHHHC---HHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHH
Confidence 11 1122223333222 2222222111 12222111111111 12344668888888876554 343332
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNIL 875 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (918)
..+..+.......+...+|...+...... ..+......-+..-.+.++++.+...+..|.... ...+.-.+-+++++
T Consensus 280 ~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~ 356 (644)
T PRK11619 280 ELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLL 356 (644)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHH
Confidence 33334443334433355666666554321 1233333333333347888888888888775432 34566778888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccchhhhccccccc
Q 043758 876 CQEKHFHEAQIVLDVMHKRGRLPCTSTRGFWRKHFIGKE 914 (918)
Q Consensus 876 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 914 (918)
...|+.++|...|+.+... ....+++....+|++
T Consensus 357 ~~~g~~~~A~~~~~~~a~~-----~~fYG~LAa~~Lg~~ 390 (644)
T PRK11619 357 LEQGRKAEAEEILRQLMQQ-----RGFYPMVAAQRLGEE 390 (644)
T ss_pred HHcCCHHHHHHHHHHHhcC-----CCcHHHHHHHHcCCC
Confidence 8889999999998887431 346677666666654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.58 E-value=2.9 Score=41.84 Aligned_cols=201 Identities=17% Similarity=0.156 Sum_probs=109.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHC--------CCCCCc-----ccHHHHHHHHHhcCChhhHHHHHHHhhcccCccc
Q 043758 416 FTIYISALCKGGKYEKAYVCLFQLVNF--------GYRPLV-----FTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCK 482 (918)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 482 (918)
|+.-...+.+..+++.|..++++..+. ...|+. .++..++.++...+..+
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~----------------- 101 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYE----------------- 101 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChH-----------------
Confidence 444444444333777777776655432 112222 34455566665555433
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH--cCCChHHHH
Q 043758 483 WGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYL--QNRKPIEAC 560 (918)
Q Consensus 483 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~ 560 (918)
..++|..+++.+...... .+.++-.-+..+.+.++.+.+.+.+.+|...- ......+...+..+. ....+..|.
T Consensus 102 --~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~~~~~~a~ 177 (278)
T PF08631_consen 102 --SVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIKQLAEKSPELAA 177 (278)
T ss_pred --HHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhhCcHHHH
Confidence 455677777777554333 35555566777777899999999999999852 213344555555442 223456677
Q ss_pred HHHHHHHhCCCCCCch-hHHHH-H-HH--HHhcCC------hhHHHHHHHHHHhC-CCCCCHHHHHHHH-------HHHH
Q 043758 561 QLFEKMKENSVQPGSY-PYTAL-I-SG--LVKKGM------VDLGCMYLDRMLAD-GFVPNVVLYTALI-------NHFL 621 (918)
Q Consensus 561 ~~~~~~~~~~~~~~~~-~~~~l-~-~~--~~~~g~------~~~a~~~~~~~~~~-~~~~~~~~~~~l~-------~~~~ 621 (918)
..+..+....+.|... ....+ + .. ....++ ++....+++...+. +.+.+..+-.++. ..+.
T Consensus 178 ~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~ 257 (278)
T PF08631_consen 178 FCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHY 257 (278)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7777776554455443 11111 1 11 112222 33344445433332 3344444433332 2356
Q ss_pred HcCCHHHHHHHHHHHH
Q 043758 622 RAGEFEFASRLENLMV 637 (918)
Q Consensus 622 ~~g~~~~a~~~~~~~~ 637 (918)
+.++++.|.+.|+-..
T Consensus 258 ~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 258 KAKNYDEAIEWYELAL 273 (278)
T ss_pred hhcCHHHHHHHHHHHH
Confidence 7889999999998654
|
It is also involved in sporulation []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.74 Score=47.74 Aligned_cols=112 Identities=8% Similarity=-0.184 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHH
Q 043758 78 IEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNI 157 (918)
Q Consensus 78 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (918)
..+|.++-+++.+.++. |+.+...+..++...++++.|..+|++....+ |....+|....-.+.-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45677778888888755 77777777777777788999999999888765 33444555555555568888888888888
Q ss_pred HHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHH
Q 043758 158 MRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAR 192 (918)
Q Consensus 158 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 192 (918)
..+.++...........+..|+.. ..+.|.+++-
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 765222222222333333345443 3455555543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.51 E-value=3 Score=41.67 Aligned_cols=123 Identities=14% Similarity=0.177 Sum_probs=63.0
Q ss_pred HhcCChHHHHHHHHHHHhCC--CCCChh-----hHHHHHHHhhchh-cHHHHHHHHHHHhhc----C----CCCcc----
Q 043758 73 VALGNIEDALRHFDRLISKN--IVPIKL-----ACVSILRGLFAEE-KFLEAFDYFIKICNA----G----VDLNC---- 132 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~--~~~~~~-----~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----~----~~~~~---- 132 (918)
.+.|+.+.|...+.++.... ..|+.. .+..++..+...+ ++++|..++++..+. + ..++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35677777777777665432 222211 2223333445555 888888888776543 1 11221
Q ss_pred -hhHHHHHHHHHcCCChh---HHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhC
Q 043758 133 -WSYNVLIDGLCYKGFLD---EVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 133 -~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 197 (918)
.++..++.++...+..+ +|..+++.+.. ..+....++.--+..+.+.++.+++.+++.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~--e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLES--EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH--hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 24555556665555443 34444444533 12222333433444445566666677777666664
|
It is also involved in sporulation []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.41 E-value=2.5 Score=43.31 Aligned_cols=28 Identities=11% Similarity=-0.018 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 310 CYTVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
.+.+++.+.+-.|++++|.+..++|.+.
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3466778888888888888888888765
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=2.2 Score=38.93 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC
Q 043758 76 GNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAG 127 (918)
Q Consensus 76 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 127 (918)
|-..-|.--|...+...|. -+.+||-+.--+...|+++.|.+.|+...+.+
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD 129 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 129 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccC
Confidence 3334444444444444322 23345555555555566666666666655554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.25 Score=41.72 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=42.1
Q ss_pred CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCC
Q 043758 570 SVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLAD-GFVPNVVLYTALINHFLRAGE 625 (918)
Q Consensus 570 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 625 (918)
...|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|+.......+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 35677788888888888888888888888887776 667777888888876654443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.049 Score=41.84 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=10.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHH
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMM 751 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m 751 (918)
+++.+...|...|++++|+..|++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444443
|
... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.22 E-value=5.4 Score=42.79 Aligned_cols=132 Identities=11% Similarity=0.043 Sum_probs=78.5
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFY 176 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~ 176 (918)
...|..++.---.....+.+...+..++..- |.-.-.|.....-=.+.|..+.+.++|++-.. +++.+...|...+.
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHH
Confidence 3355555544344444455556666665442 22223444555555567777777888877774 56666666666555
Q ss_pred HHh-ccCchHHHHHHHHHHHhC-CCC-CChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 043758 177 ALC-KNIRTVEAESFAREMESQ-GFY-VDKLMYTSLINGYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 177 ~~~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (918)
.++ ..|+.+.....|+...+. |.. .....|...|..-..++++.....++++.++
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 443 446666677777766653 111 1344567777766777777777777777775
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.06 Score=41.35 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=47.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 761 VTFCILINGHIAAGEIDQAIGLFNQMNAD----GC-VPD-KTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 761 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
.+++.+...|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46778888888999999999888887754 21 122 46788888889999999999998887653
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.63 Score=48.17 Aligned_cols=66 Identities=21% Similarity=0.173 Sum_probs=53.6
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH----hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 722 MPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV----TFCILINGHIAAGEIDQAIGLFNQMNAD 789 (918)
Q Consensus 722 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~ 789 (918)
+.+...|+.+..+|.+.|++++|+..|++.++ +.|+.. +|..+..+|...|+.++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567888888899999999999999988887 466643 4777888888899999999998888874
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.95 Score=43.67 Aligned_cols=141 Identities=12% Similarity=0.063 Sum_probs=63.9
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 043758 735 LCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHV 814 (918)
Q Consensus 735 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 814 (918)
....|+..+|...|+...... +-+......++.+|...|+++.|..++..+...--.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344455555555555555431 1122233445555555566666655555544321111111122233444444444444
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcC
Q 043758 815 FSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHD-HVPCLSNCNWLLNILCQEK 879 (918)
Q Consensus 815 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 879 (918)
..+-.+.-. .| |...--.+...+...|+.+.|++.+-.+++.+ ...|..+-..++.++..-|
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444432 23 33344444445555555555555555544321 1334455555555555555
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.44 Score=47.98 Aligned_cols=96 Identities=7% Similarity=-0.039 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 043758 797 VYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILC 876 (918)
Q Consensus 797 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (918)
++..+.-+|.+.+++.+|++..+..++.+ +++...+-.-..++...|+++.|...+++++... |.|..+-..|+.+-.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34455555666666666666666666532 3344555555556666666777777777666665 555555556665555
Q ss_pred hcCCHHHH-HHHHHHHHhC
Q 043758 877 QEKHFHEA-QIVLDVMHKR 894 (918)
Q Consensus 877 ~~g~~~~A-~~~~~~~~~~ 894 (918)
+..++++. .++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 55544444 6666666554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.28 Score=41.50 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHH
Q 043758 790 GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHK-RGFVPKKATYEHLLE 838 (918)
Q Consensus 790 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~ 838 (918)
...|+..++.+++.+|+..|++..|+++++...+ .+++-+..+|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566777777777777777777777777777654 355556677777776
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.093 Score=53.96 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHH
Q 043758 794 DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKA----TYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCN 869 (918)
Q Consensus 794 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 869 (918)
+...|+.+..+|...|++++|+..+++..+ +.|+.. .|..+..+|.+.|+.++|+..++++++.. ++. |.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~~---f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NLK---FS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-chh---HH
Confidence 568899999999999999999999999886 567654 58889999999999999999999999863 222 22
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHHHhCCCC
Q 043758 870 WLLN--ILCQEKHFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 870 ~l~~--~~~~~g~~~~A~~~~~~~~~~~~~ 897 (918)
.+.. .+..-.+.++..++++.+.+-|..
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1111 122233445777888888888764
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.8 Score=36.00 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=47.0
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043758 833 YEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 833 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 897 (918)
....+..+..+|+-+.-.+++..+...+ .++++....++.+|.+.|+..+|.+++.+.-++|..
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3444566788888888888888887655 888999999999999999999999999999999864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.32 Score=46.35 Aligned_cols=87 Identities=15% Similarity=0.106 Sum_probs=40.7
Q ss_pred hcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChh
Q 043758 772 AAGEIDQAIGLFNQMNAD--GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKR-GFVP-KKATYEHLLECFCANCLSI 847 (918)
Q Consensus 772 ~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 847 (918)
+.|++..|...|...++. +-.-.+..+.+|..++...|++++|..+|..+.+. +-.| .+..+-.+..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 345555555555555554 11122344445555555555555555555555431 1111 1223444444445555555
Q ss_pred hHHHHHHHHHh
Q 043758 848 PAFNMFKEMIV 858 (918)
Q Consensus 848 ~A~~~~~~~~~ 858 (918)
+|...+++..+
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.4 Score=42.51 Aligned_cols=150 Identities=11% Similarity=0.005 Sum_probs=94.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
...|++.+|..+|+.+....+. +..+--.++.+|...|++++|..++..+....-.........-+..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 6677778888888877776544 344566777888888888888888877654321222222233456666666666666
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhC--CCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQ--GFYVDKLMYTSLINGYCSNRNMKMAMRLFF 227 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 227 (918)
.+-.+.-. -+.|...-..+...+...|+.++|...+-.+.++ |.. |...-..++..+.-.|.-+.+...++
T Consensus 224 ~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 224 DLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 66666654 2335555566777777888888887666665543 333 66677777777777664444443333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.6 Score=45.37 Aligned_cols=151 Identities=11% Similarity=0.009 Sum_probs=70.4
Q ss_pred hCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhH----HHHHHHHHhcCCHH
Q 043758 702 SNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTF----CILINGHIAAGEID 777 (918)
Q Consensus 702 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~ 777 (918)
..|++.+|...++++. ..+|.|...++..=+++...|+.+.-...++++.-. -.||...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL-~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLL-DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHH-HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3455555555555555 334445555555555666666665555555555432 22333222 11222333556666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCChhhHHHHHH
Q 043758 778 QAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKR---GFVPKKATYEHLLECFCANCLSIPAFNMFK 854 (918)
Q Consensus 778 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 854 (918)
+|.+.-++..+.+- .|.-...+....+--.|+.+++.++..+-... +..--...|....-.+...+.++.|+++++
T Consensus 193 dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 66666555554211 13333334445555556666666555443321 111111223333333444555666666665
Q ss_pred H
Q 043758 855 E 855 (918)
Q Consensus 855 ~ 855 (918)
+
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.96 Score=45.70 Aligned_cols=63 Identities=16% Similarity=-0.029 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 043758 506 AIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKEN 569 (918)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 569 (918)
.+++.+..++.+.+++..|+...++.+..+ ++|+...-.-..+|...|+++.|+..|+++++.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 344555566666666666666666666654 455555555556666666666666666666654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.51 Score=45.07 Aligned_cols=97 Identities=16% Similarity=0.091 Sum_probs=47.3
Q ss_pred HHHHHHHhhchhcHHHHHHHHHHHhhcCCC--CcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCc-ccHHHHHH
Q 043758 100 CVSILRGLFAEEKFLEAFDYFIKICNAGVD--LNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPAL-HPYKSLFY 176 (918)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ll~ 176 (918)
|+.-+. +.+.|++.+|...|...++.... -....+..|..++...|++++|..+|..+.+..+-.|.. ....-|..
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 443333 23445566666666555544311 112244555555556666666666665555422222222 33334444
Q ss_pred HHhccCchHHHHHHHHHHHhC
Q 043758 177 ALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 177 ~~~~~g~~~~a~~~~~~~~~~ 197 (918)
+..+.|+.++|..+|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 455555555565555555554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.026 Score=34.52 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=27.6
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 043758 853 FKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQ 885 (918)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 885 (918)
+++.++.. |.|+.+|+.|+.+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45667776 889999999999999999999986
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.64 E-value=7.7 Score=41.67 Aligned_cols=132 Identities=8% Similarity=-0.044 Sum_probs=73.4
Q ss_pred CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 043758 167 ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKL-MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLI 245 (918)
Q Consensus 167 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 245 (918)
+...+..++.---.....+.+..+++.+... .|... -|......-.+.|..+.+..+|++-++. ++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3344444443333333445566666666654 23333 2344444445677777777778777653 444555555554
Q ss_pred HHH-HhcCChhHHHHHHHHHHhC-CCC-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043758 246 HGF-FKMGLFDKGWVLYSQMSDW-GFQ-PNMVTDLIMISNYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 246 ~~~-~~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 301 (918)
.-+ ...|+.+.....|+..... |.. .....|-..+..-..++++.....+++++++
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 433 2455666666667666554 322 2234555556555666777777777777775
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.51 E-value=4.2 Score=38.05 Aligned_cols=145 Identities=11% Similarity=0.052 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHh---CCC--CCChhhHHHH
Q 043758 135 YNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMES---QGF--YVDKLMYTSL 209 (918)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~--~~~~~~~~~l 209 (918)
|+-....|..+|..+.|--.+++.-+ ..+..+++.|.+++++... .+- +.-...+...
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak-----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAK-----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHH-----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 33334456667777766666666544 2233455555555555322 110 0012234555
Q ss_pred HHHHhcCCChHHHHHHHHHHHh----cCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCccHhhHHHHHH
Q 043758 210 INGYCSNRNMKMAMRLFFRMLK----TGCEPDS-YTCNTLIHGFFKMGLFDKGWVLYSQMSDWG---FQPNMVTDLIMIS 281 (918)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~ 281 (918)
-+.+++...+.+|-..|.+-.. ..-.++. ..|...|-.+....++..|...++.--+.+ -..+..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 5666777777776655544321 1111222 234455555556678888888888754432 1234556677777
Q ss_pred HHHhcCCHHHHHHHHH
Q 043758 282 NYCREGEVDAALMLLN 297 (918)
Q Consensus 282 ~~~~~g~~~~A~~~~~ 297 (918)
+| ..|+.+.+..++.
T Consensus 237 ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVLS 251 (308)
T ss_pred Hh-ccCCHHHHHHHHc
Confidence 76 5678877766653
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.1 Score=39.72 Aligned_cols=119 Identities=19% Similarity=0.206 Sum_probs=77.8
Q ss_pred hhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHH
Q 043758 8 LIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDR 87 (918)
Q Consensus 8 ~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~ 87 (918)
.|++|++........+|...+++-- |.-.+.-|.+..+..++..++ ++|..=|+.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~---------------WG~ALLELAqfk~g~es~~mi----------edAisK~ee 60 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTN---------------WGGALLELAQFKQGPESKKMI----------EDAISKFEE 60 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHH---------------HHHHHHHHHHHS-HHHHHHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHH---------------HHHHHHHHHhccCcchHHHHH----------HHHHHHHHH
Confidence 5788999999988888885444422 233444555666667777774 788888999
Q ss_pred HHhCCCCCChhhHHHHHHHhhchhc-----------HHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHH
Q 043758 88 LISKNIVPIKLACVSILRGLFAEEK-----------FLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVN 156 (918)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (918)
++..+|. ...++..+..+|...+. |++|.+.|+++.+. .|+...|+.-+.... +|=+++.
T Consensus 61 AL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~ 131 (186)
T PF06552_consen 61 ALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHM 131 (186)
T ss_dssp HHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHH
T ss_pred HHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHH
Confidence 9988755 34577777777766542 66777777777765 678888888777763 3666666
Q ss_pred HHHh
Q 043758 157 IMRK 160 (918)
Q Consensus 157 ~~~~ 160 (918)
++.+
T Consensus 132 e~~~ 135 (186)
T PF06552_consen 132 EIHK 135 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.38 E-value=1.3 Score=47.99 Aligned_cols=115 Identities=13% Similarity=0.069 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCChhHHHHHHHHHHhC--CCCC-CHHHHHHHHHHHHccCChhhHH
Q 043758 775 EIDQAIGLFNQMNADGCVPDKTVYN-TLLKGLCQAGRLSHVFSVFYSMHKR--GFVP-KKATYEHLLECFCANCLSIPAF 850 (918)
Q Consensus 775 ~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p-~~~~~~~l~~~~~~~~~~~~A~ 850 (918)
+.+.|.++++.+.+. -|+...|. .-.+.+...|++++|++.+++.... ..+. ....+.-+..++.-.+++++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 455555555555553 23433332 2223444555666666666554321 1111 1123334444555556666666
Q ss_pred HHHHHHHhCCCCCCcc-cHHHHHHHHHhcCCH-------HHHHHHHHHHH
Q 043758 851 NMFKEMIVHDHVPCLS-NCNWLLNILCQEKHF-------HEAQIVLDVMH 892 (918)
Q Consensus 851 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~-------~~A~~~~~~~~ 892 (918)
..+..+.+.. .-+.. ..+..+-+|...|+. ++|.+++.+..
T Consensus 326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 6666655443 22222 223344444555555 55555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.62 Score=49.50 Aligned_cols=155 Identities=16% Similarity=0.059 Sum_probs=84.9
Q ss_pred hchhcHHHHHHHHH-HHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHH
Q 043758 108 FAEEKFLEAFDYFI-KICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVE 186 (918)
Q Consensus 108 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 186 (918)
.-+++++++.+..+ .-.-..++ ..-.+.+++.+.+.|..+.|+++.+.-.. -+....+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHH
Confidence 44566766655554 11111222 33466777777777777777776555332 4555667777777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 187 AESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSD 266 (918)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 266 (918)
|.++.++. .+...|..|......+|+++-|...|++.. -|..|+-.|...|+.+.-.++.+....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 77654322 256677788887778888887777776643 144555556667777766666666665
Q ss_pred CCCCccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 267 WGFQPNMVTDLIMISNYCREGEVDAALMLLNS 298 (918)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 298 (918)
.| . ++....++.-.|+.++..+++.+
T Consensus 402 ~~-~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RG-D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cc-C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 54 2 33344444555666666665544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.35 E-value=2.6 Score=35.06 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=56.0
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCC
Q 043758 424 CKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKP 503 (918)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 503 (918)
.-.|..++..++....... .+..-++.+|-.....-+-+-..+.++.+-+.-....++++......+-.+- .
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n-----~ 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN-----K 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT------
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc-----c
Confidence 3456777777777777653 3334444444433333322222233333222222233344444433333221 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 043758 504 SVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENS 570 (918)
Q Consensus 504 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 570 (918)
+.......+..+.+.|+-+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 22333444444555555555555555544322 3444444455555555555555555555554444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.13 E-value=3.4 Score=44.79 Aligned_cols=114 Identities=16% Similarity=0.162 Sum_probs=62.8
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHH-HHHHHHccCChhHHHHHHHHHHHcC--CC-CcHHhHHHHHHHHHhcCCHHHH
Q 043758 704 GKKGTVQKIVLKVKDIEFMPNLYLYND-IFLLLCGVGRMDDAYDHFQMMKREG--LR-PNQVTFCILINGHIAAGEIDQA 779 (918)
Q Consensus 704 g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~--~~-p~~~~~~~li~~~~~~g~~~~A 779 (918)
...+.+.+++..+.+. -|+...|.. -.+.+...|+.++|++.|++..... .+ .....+.-+..++....++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 5666777777766632 244444433 3356666778888888887654311 11 1122344455566777788888
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHH-HHHHHcCCh-------hHHHHHHHHH
Q 043758 780 IGLFNQMNAD-GCVPDKTVYNTLL-KGLCQAGRL-------SHVFSVFYSM 821 (918)
Q Consensus 780 ~~~~~~~~~~-~~~p~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~ 821 (918)
...|..+.+. .. ....|.-+. .++...|+. ++|.+++.+.
T Consensus 325 ~~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 325 AEYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 8888777775 22 222333222 234455666 5555555444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.9 Score=47.14 Aligned_cols=146 Identities=10% Similarity=0.049 Sum_probs=97.0
Q ss_pred ChhHHHHHHHHHHH-cCCCCcHH-hHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043758 740 RMDDAYDHFQMMKR-EGLRPNQV-TFCILINGHIA---------AGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQA 808 (918)
Q Consensus 740 ~~~~A~~~~~~m~~-~~~~p~~~-~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 808 (918)
..+.|..+|.+... +.+.|+.. .|..+..++.. ..+..+|.++.+..++.+- -|+.....+..++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhh
Confidence 45678888998872 23566644 45444444331 2245566777777777532 3677777888888888
Q ss_pred CChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHH--HHHHHHHhcCCHHHHH
Q 043758 809 GRLSHVFSVFYSMHKRGFVPKKA-TYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCN--WLLNILCQEKHFHEAQ 885 (918)
Q Consensus 809 g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~ 885 (918)
|+++.|...|++... +.|+.. +|......+...|+.++|.+.+++..+.. |--..+-. ..+..|+.. ..++|.
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs-P~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE-PRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-chhhHHHHHHHHHHHHcCC-chhhhH
Confidence 889999999999885 667665 45555556788899999999999988775 33333322 223355554 567777
Q ss_pred HHHHH
Q 043758 886 IVLDV 890 (918)
Q Consensus 886 ~~~~~ 890 (918)
.++.+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 77764
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.01 E-value=13 Score=41.73 Aligned_cols=118 Identities=14% Similarity=0.201 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHH
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSY--TCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNY 283 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (918)
...-+....+...++-|+.+-+. .+..++.. .......-+.+.|++++|...|-+.+.. +.|. .++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 34455556666666666665433 22222211 1222233344667777776666555432 1222 233445
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 043758 284 CREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKK 333 (918)
Q Consensus 284 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (918)
.....+..-...++.+.+.|+ .+...-..|+.+|.+.++.++..++.+.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred cCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 555555555666666666663 3444556677777777777666665543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.94 E-value=4.1 Score=35.80 Aligned_cols=124 Identities=19% Similarity=0.060 Sum_probs=66.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcch-hHHHHH--HHHHcCCCh
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIK-LACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCW-SYNVLI--DGLCYKGFL 148 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~--~~~~~~g~~ 148 (918)
+..|+.++|+..|..+.+.|...-+ -+...........|+..+|...|+++-.....|-.. -...+- -.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 7778888888888888877644211 233445555677788888888888876543333222 111111 123345566
Q ss_pred hHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhC
Q 043758 149 DEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 197 (918)
+....-.+-+.. .+-+.....-.+|.-+-.+.|++..|.+.|..+...
T Consensus 149 ~dV~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 555555554433 221222222334444445556666666666665553
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.075 Score=35.06 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=9.9
Q ss_pred HHHHHHccCChhhHHHHHHHHHhC
Q 043758 836 LLECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 836 l~~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
+..+|.+.|++++|.+.++++++.
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333344444444444444444433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.1 Score=38.37 Aligned_cols=72 Identities=17% Similarity=0.289 Sum_probs=49.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc
Q 043758 73 VALGNIEDALRHFDRLISKNIVP--IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY 144 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 144 (918)
.+.|++++|.+.|+.+..+-+.. ...+.-.++.+|.+.+++++|+..+++.++.........|...+.+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 67788888888888887765331 3445667778888888888888888888877644333455555555543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.80 E-value=4.3 Score=35.51 Aligned_cols=126 Identities=13% Similarity=0.108 Sum_probs=72.2
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 043758 172 KSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKM 251 (918)
Q Consensus 172 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 251 (918)
..++..+...+.+.....+++.+...+. .++..++.++..|++.+ ..+.++.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455555556667777777777766653 46667777777776543 2333343332 12334455567777777
Q ss_pred CChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh
Q 043758 252 GLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCRE-GEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK 320 (918)
Q Consensus 252 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 320 (918)
+.++++.-++..+.. +...+..+... ++++.|.+++... .+...|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 777777777766522 11233333333 6777777776652 244567666665543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.70 E-value=5.9 Score=41.55 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=25.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043758 730 DIFLLLCGVGRMDDAYDHFQMMKREGLRP--NQVTFCILINGHIAAGEIDQAIGLFNQM 786 (918)
Q Consensus 730 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 786 (918)
.+..++-+.|+.++|++.+.+|.+.. ++ +......|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34444444555555555555554321 11 1113334555555555555555555443
|
The molecular function of this protein is uncertain. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.2 Score=38.03 Aligned_cols=60 Identities=8% Similarity=0.002 Sum_probs=30.2
Q ss_pred HHHHHHHhhchhcHHHHHHHHHHHhhcCCCCc---chhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 100 CVSILRGLFAEEKFLEAFDYFIKICNAGVDLN---CWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
+..-.....+.|++++|++.|+.+...- +.+ ..+--.++.++.+.++++.|+..+++.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3334444455566666666665555432 211 12333445555555666666655555555
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.56 E-value=3.1 Score=36.37 Aligned_cols=126 Identities=9% Similarity=0.005 Sum_probs=69.2
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 043758 728 YNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQ 807 (918)
Q Consensus 728 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 807 (918)
...++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+....++. . ++......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 3345556666667777777777777665 245556777777776543 3334444432 1 122333446666777
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-CChhhHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 043758 808 AGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCAN-CLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILC 876 (918)
Q Consensus 808 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (918)
.+.++++.-++.++.. +...+..+... ++++.|.+.+.+ ..++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 7777777777766521 12222222222 666666666664 234556666665544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.36 E-value=2.7 Score=43.85 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=28.3
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHh
Q 043758 138 LIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMES 196 (918)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 196 (918)
+...+.+.|+.++|++.++++.+..+...+......|+.++...+.+.+++.++.+..+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44444455555555555555544111111223444555555555555555555555543
|
The molecular function of this protein is uncertain. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.34 E-value=17 Score=41.10 Aligned_cols=88 Identities=15% Similarity=0.036 Sum_probs=42.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCCCchhHHHHHHHHHh---
Q 043758 512 IGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENS-VQPGSYPYTALISGLVK--- 587 (918)
Q Consensus 512 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 587 (918)
...+.-.|.++.|.+.+-+.. +...+.+.+...+..|.-.+-..... ..+.... -.|...-+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~--~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNE--FNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhhc--cCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 345566899999999888722 22456666666666554433322222 2222111 01112557778888876
Q ss_pred cCChhHHHHHHHHHHhC
Q 043758 588 KGMVDLGCMYLDRMLAD 604 (918)
Q Consensus 588 ~g~~~~a~~~~~~~~~~ 604 (918)
..++..|.+++--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 56778888888776654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.19 E-value=1.8 Score=42.21 Aligned_cols=153 Identities=10% Similarity=-0.021 Sum_probs=104.8
Q ss_pred ccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHH----HHHHHhcCChh
Q 043758 180 KNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTL----IHGFFKMGLFD 255 (918)
Q Consensus 180 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~g~~~ 255 (918)
-.|+..+|...++++.+.-+ .|..+++-.=.+|.-+|+.......++++.-. ..||...|..+ .-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45777788888888887633 37777887788888889888888888887744 23454433332 22445788899
Q ss_pred HHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 043758 256 KGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN---LAPSVHCYTVLIDALYKHNRLMEVDELYK 332 (918)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 332 (918)
+|++.-++..+.+ +.|.-...++...+.-.|++.++.+++..-...= .-.-...|-...-.++..+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999888888776 5667777778888888889999888886544320 00011223333446677789999999996
Q ss_pred HHH
Q 043758 333 KML 335 (918)
Q Consensus 333 ~~~ 335 (918)
.-.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.10 E-value=22 Score=41.71 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=62.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCChh
Q 043758 770 HIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKA--TYEHLLECFCANCLSI 847 (918)
Q Consensus 770 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~ 847 (918)
+...+.+++|--.|+..-+. .-.+.+|..+|+|.+|+.+..++.. .-+.. +-..|..-+..++++-
T Consensus 949 L~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccch
Confidence 34556666666665544221 2345667777788887777777631 11221 1255666777888888
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043758 848 PAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMH 892 (918)
Q Consensus 848 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 892 (918)
+|.+++.+.... ....+..|++...|++|.++...-.
T Consensus 1017 eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 888887776532 2345566677777777777665443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.21 Score=32.93 Aligned_cols=29 Identities=14% Similarity=-0.023 Sum_probs=15.8
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcC
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAG 127 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 127 (918)
+|..+..+|...|++++|+++|+++++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44455555555555555555555555543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.05 E-value=4 Score=36.86 Aligned_cols=127 Identities=12% Similarity=0.024 Sum_probs=82.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH-----
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVY--NTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYE----- 834 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----- 834 (918)
.|..++.+.. .+.+ +.....+++........-..+ -.+...+..+|++++|..-++.... .|....+.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHH
Confidence 4555555443 3333 455555666654211111111 2334567889999999999988763 33333333
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 835 HLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 835 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.|.......|.+++|+..++.....+. .+......+++|...|+-++|+.-|+..++.+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 344567888999999999987654321 34456678899999999999999999999887
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.77 E-value=6 Score=36.25 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 310 CYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
+|--|..-+...|+.++|..+|+-...
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 444555555566666666666655544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.72 E-value=2.5 Score=45.05 Aligned_cols=157 Identities=14% Similarity=0.066 Sum_probs=103.5
Q ss_pred HHHcCCChhHHHHHHH--HHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCC
Q 043758 141 GLCYKGFLDEVLEVVN--IMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRN 218 (918)
Q Consensus 141 ~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 218 (918)
...-.++++.+.++.. .+.. .++ ....+.++..+-+.|-.+.|.++-.+ +.+ -.....+.|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~--~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP--NIP--KDQGQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG--G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhhhcc--cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCC
Confidence 3445788888777665 2221 111 34467788888888999999887543 322 2344567899
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 219 MKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNS 298 (918)
Q Consensus 219 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 298 (918)
++.|.++.++ .++...|..|.......|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+.
T Consensus 334 L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 9988887543 34667899999999999999999999987653 45677778889999888888887
Q ss_pred HhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 043758 299 KVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKM 334 (918)
Q Consensus 299 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 334 (918)
....| -+|....++.-.|+.++..+++.+-
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 77655 2666777777889998888887543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.64 E-value=22 Score=40.43 Aligned_cols=272 Identities=12% Similarity=0.027 Sum_probs=136.3
Q ss_pred cHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhc
Q 043758 47 SYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNA 126 (918)
Q Consensus 47 ~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 126 (918)
.....-..+..+|..++|++.- .+.|+++.|..++++.-.. +...++..-...+.+.+...
T Consensus 349 lH~~Aa~w~~~~g~~~eAI~hA----laA~d~~~aa~lle~~~~~---------------L~~~~~lsll~~~~~~lP~~ 409 (894)
T COG2909 349 LHRAAAEWFAEHGLPSEAIDHA----LAAGDPEMAADLLEQLEWQ---------------LFNGSELSLLLAWLKALPAE 409 (894)
T ss_pred HHHHHHHHHHhCCChHHHHHHH----HhCCCHHHHHHHHHhhhhh---------------hhcccchHHHHHHHHhCCHH
Confidence 3445556677788888887765 7778888888888776211 11122222222222221111
Q ss_pred CCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcc-------cHHHHHHH-HhccCchHHHHHHHHHHHhC-
Q 043758 127 GVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALH-------PYKSLFYA-LCKNIRTVEAESFAREMESQ- 197 (918)
Q Consensus 127 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~~ll~~-~~~~g~~~~a~~~~~~~~~~- 197 (918)
-+.-++...-.-+-......++.+|..+.+++... -..|+.. .++++-.. ....|++++|..+.+...+.
T Consensus 410 ~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~-l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L 488 (894)
T COG2909 410 LLASTPRLVLLQAWLLASQHRLAEAETLIARLEHF-LKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQL 488 (894)
T ss_pred HHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHH-hCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 00001111111111223467788888888777652 1222211 23333222 23457888888887776654
Q ss_pred ---CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHH---HH--HHHHhcCChhHH--HHHHHHHHhC
Q 043758 198 ---GFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNT---LI--HGFFKMGLFDKG--WVLYSQMSDW 267 (918)
Q Consensus 198 ---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~---ll--~~~~~~g~~~~a--~~~~~~~~~~ 267 (918)
-..+....+..+..+..-.|++++|+.+.....+..-..++..|.. +. ..+...|....+ ...+......
T Consensus 489 ~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q 568 (894)
T COG2909 489 PEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQ 568 (894)
T ss_pred ccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2223455677777888889999999988877665432334443322 22 234556633222 2222222211
Q ss_pred ---CCC---ccHhhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCcchH--HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 268 ---GFQ---PNMVTDLIMISNYCRE-GEVDAALMLLNSKVSSNLAPSVHCY--TVLIDALYKHNRLMEVDELYKKMLANR 338 (918)
Q Consensus 268 ---~~~---~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (918)
..+ +-..++..+..++.+. +...++..-++--......|-.... ..|.......|+.++|...++++....
T Consensus 569 ~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 569 HLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 101 1233455555555551 1122222222222222111111122 256677788899999998888887643
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.58 E-value=11 Score=36.65 Aligned_cols=221 Identities=16% Similarity=0.065 Sum_probs=124.2
Q ss_pred hcHHHHHHHHHHHhhcCCC-CcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHH
Q 043758 111 EKFLEAFDYFIKICNAGVD-LNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAES 189 (918)
Q Consensus 111 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 189 (918)
+....+...+......... .....+......+...+++..+...+...............+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555554443311 123455566666666777777776666665310122333444445555555666667777
Q ss_pred HHHHHHhCCCCCChhhHHHHHH-HHhcCCChHHHHHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043758 190 FAREMESQGFYVDKLMYTSLIN-GYCSNRNMKMAMRLFFRMLKTGCEP----DSYTCNTLIHGFFKMGLFDKGWVLYSQM 264 (918)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 264 (918)
.+.........+ ......... .+...|+++.|...+.+.... .| ....+......+...++.+.+...+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 777666643332 122222222 566777777777777777542 22 2223333333455667777777777777
Q ss_pred HhCCCCc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 265 SDWGFQP-NMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPS-VHCYTVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 265 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
.... +. ....+..+...+...++.+.|...+....... |+ ...+..+...+...+..+.+...+......
T Consensus 194 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 194 LKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7653 22 35566667777777777888888777777643 22 233444444444556677777777666553
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.53 E-value=1.1 Score=42.55 Aligned_cols=87 Identities=14% Similarity=0.190 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCC----------------ChHHHHHH
Q 043758 504 SVAIYDAIIGHLCK-----EKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNR----------------KPIEACQL 562 (918)
Q Consensus 504 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~A~~~ 562 (918)
|-.+|-..+..+.. .+..+-....++.|.+.|+..|..+|+.++..+=+.. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44444444444433 2455556666777777788788888887777654422 22345556
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHhcCC
Q 043758 563 FEKMKENSVQPGSYPYTALISGLVKKGM 590 (918)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (918)
+++|..+|+.||..+-..|+.++.+.+-
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 6666666666666655555655555443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.38 E-value=8.7 Score=38.49 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCCCh--hhHHHHHHHHHccCC--hhHHHHHHHHHHHcCCCCcHHhHHHHH
Q 043758 708 TVQKIVLKVKDIEFMPNL--YLYNDIFLLLCGVGR--MDDAYDHFQMMKREGLRPNQVTFCILI 767 (918)
Q Consensus 708 ~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li 767 (918)
.++.+++.+.+.|+..+. .....++........ ...+.++++.+.+.|+++....|..+.
T Consensus 161 ~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 161 RMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 345555555555554432 223333322222211 346777777888877777766665443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.19 E-value=2.8 Score=41.46 Aligned_cols=126 Identities=9% Similarity=-0.047 Sum_probs=80.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHhcCC---CC--ChhhHHHHHHHHHccCChhHHHHHHHHHHHc--CCCC-cH------Hh
Q 043758 697 FSAVFSNGKKGTVQKIVLKVKDIEF---MP--NLYLYNDIFLLLCGVGRMDDAYDHFQMMKRE--GLRP-NQ------VT 762 (918)
Q Consensus 697 ~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p-~~------~~ 762 (918)
..+....+.++++.+.|+...+... .| ....+-.|.+.|.+..++++|.-+..+..+. .+.. |. .+
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ 208 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS 208 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence 3344444556666666665432221 11 2467889999999999999998877765432 1221 11 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043758 763 FCILINGHIAAGEIDQAIGLFNQMNAD----GCVPD-KTVYNTLLKGLCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 763 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 822 (918)
...+.-++...|....|.+..++..+. |-.+. ..+...+.+.|...|+.+.|..-+++..
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 233445677888888888887776553 43332 3556678889999999999988887654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.15 E-value=22 Score=39.39 Aligned_cols=355 Identities=11% Similarity=0.048 Sum_probs=186.9
Q ss_pred cccCChHHHHHHHHHHH--------HcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 043758 481 CKWGNLDSALDILDQME--------VRGPKPSVAIYD-----AIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMI 547 (918)
Q Consensus 481 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 547 (918)
.+..++++-..+..... ..|++.+..-|. .+++-+...+.+..|+++-.-+...-... ...|....
T Consensus 400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa 478 (829)
T KOG2280|consen 400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWA 478 (829)
T ss_pred cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHH
Confidence 34445555444444332 235555444443 34566677788888888877765321111 45555565
Q ss_pred HHHHcCCCh--HHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CCHHHHHHHHHHHH
Q 043758 548 NGYLQNRKP--IEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFV----PNVVLYTALINHFL 621 (918)
Q Consensus 548 ~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~ 621 (918)
.-+.+..+. +++.+...+=..... -...+|..+...-...|+.+.|..+++.=...+.. .+..-+..-+.-+.
T Consensus 479 ~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 479 RRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 555554322 223333332222222 34456777777777889999998877643222111 12223344455556
Q ss_pred HcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchh-------
Q 043758 622 RAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKS------- 694 (918)
Q Consensus 622 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 694 (918)
..|+.+-...++-.+...- .... ++..+...|.....+.
T Consensus 558 es~d~~Li~~Vllhlk~~~---~~s~-------------------------------l~~~l~~~p~a~~lY~~~~r~~~ 603 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNKL---NRSS-------------------------------LFMTLRNQPLALSLYRQFMRHQD 603 (829)
T ss_pred hcCCchhHHHHHHHHHHHH---HHHH-------------------------------HHHHHHhchhhhHHHHHHHHhhc
Confidence 6677766666555554210 0000 0111111111111110
Q ss_pred --hhHHHHHhCCChhHH-HHHHHHHHh-cCCCCChhhHHHHHHHHHccCCh---hHH-------HHHHHHHHH-cCCCCc
Q 043758 695 --TAFSAVFSNGKKGTV-QKIVLKVKD-IEFMPNLYLYNDIFLLLCGVGRM---DDA-------YDHFQMMKR-EGLRPN 759 (918)
Q Consensus 695 --~~~~~~~~~g~~~~a-~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~---~~A-------~~~~~~m~~-~~~~p~ 759 (918)
.+.+.+....+.... .-.++.... ..+.+-..........+++.... ++| +.+.+.+.. .|....
T Consensus 604 ~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~ 683 (829)
T KOG2280|consen 604 RATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFV 683 (829)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 011111111111111 111111000 00122223333444455544331 111 222222221 233344
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043758 760 QVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLEC 839 (918)
Q Consensus 760 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 839 (918)
..+.+--+.-+..-|+-.+|.++-.+.+- ||-..|-.-+.+++..++|++-.++-+.+.. +-.|.-++.+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~ 753 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEA 753 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHH
Confidence 44666667778888999999888777643 7888888889999999999988777666541 3345667788
Q ss_pred HHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 043758 840 FCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDV 890 (918)
Q Consensus 840 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 890 (918)
|.+.|+.++|.+++.+.. +.+ -.+.+|.+.|++.+|.++--+
T Consensus 754 c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHHH
Confidence 899999999998887642 222 588999999999999887654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.55 Score=45.62 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMI 857 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 857 (918)
.++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..++++.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 455556666666666666666666665421 2255566666666666666666666666554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.08 E-value=3.7 Score=40.71 Aligned_cols=202 Identities=10% Similarity=0.005 Sum_probs=115.0
Q ss_pred hHHHHHHHhhchhcHHHHHHHHH-HHhhc-CCCC---cchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCc---cc
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFI-KICNA-GVDL---NCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPAL---HP 170 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~-~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~ 170 (918)
++..+..+++..|.+++++..-- +|.-. ..+. -...|..+.+++-+.-++.+++.+-..-....|..|.. ..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 44455666778888877765432 11110 0011 11345556666666666666666666554433444421 23
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc----CCCCChhhH
Q 043758 171 YKSLFYALCKNIRTVEAESFAREMESQGF-----YVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT----GCEPDSYTC 241 (918)
Q Consensus 171 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~ 241 (918)
..++..++.-.+.++++.+.|+...+-.- .....+|-.|...|.+..|+++|+-...+..+. ++..-..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 33455666666778888888887655311 112346888888888889999888776665432 221111123
Q ss_pred H-----HHHHHHHhcCChhHHHHHHHHHHhC----CCC-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043758 242 N-----TLIHGFFKMGLFDKGWVLYSQMSDW----GFQ-PNMVTDLIMISNYCREGEVDAALMLLNSKV 300 (918)
Q Consensus 242 ~-----~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 300 (918)
. .|.-++-..|.+..|.+.-++..+. |-. .-......+.+.|...|+.+.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 2333556777777777777766443 311 113344556777888888888777776543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.07 E-value=12 Score=35.88 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=29.2
Q ss_pred hcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043758 587 KKGMVDLGCMYLDRMLAD--GFVPNVVLYTALINHFLRAGEFEFASRLENLMVTN 639 (918)
Q Consensus 587 ~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 639 (918)
..|++++|.+.|+.+... +.+-...+.-.++-++.+.++++.|+...++.++.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 456666666666666544 11223344445555566666666666666665543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.3 Score=42.15 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=51.8
Q ss_pred ChhhHHHHHHHHHcc-----CChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 043758 724 NLYLYNDIFLLLCGV-----GRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVY 798 (918)
Q Consensus 724 ~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 798 (918)
|-.+|-..+..+... +.++=....++.|.+-|+..|..+|+.|+..+-+-.- .|. ..+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HHH
Confidence 445555555555433 3344444556666667777777777777665543221 111 001
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 043758 799 NTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCL 845 (918)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 845 (918)
....--|-+ +-+=++.++++|...|+.||..+-..++.++.+.+-
T Consensus 129 Q~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111111 112345666666666666666666666666655553
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.29 Score=30.43 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=22.2
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 867 NCNWLLNILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 867 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 893 (918)
+|..|+.+|.+.|+|++|.+++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367899999999999999999998654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.56 E-value=9.2 Score=33.74 Aligned_cols=124 Identities=11% Similarity=0.032 Sum_probs=74.5
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChh-hHHHH--HHHHHhcCC
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDKL-MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSY-TCNTL--IHGFFKMGL 253 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l--l~~~~~~g~ 253 (918)
+++.++.++|..-|..+.+.|...-+. ..-.........|+-..|...|+++-.....|-.. ....| .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356677788888888887765431111 12223344566788888888888876553333322 11111 123456777
Q ss_pred hhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043758 254 FDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 301 (918)
++......+.+...+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777777776665544333444555666666778888888888877765
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.18 Score=30.85 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=19.5
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhchhcHHHHH
Q 043758 85 FDRLISKNIVPIKLACVSILRGLFAEEKFLEAF 117 (918)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 117 (918)
|+++++.+|. ++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555544 5666666666666666666664
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.31 E-value=1.3 Score=39.75 Aligned_cols=124 Identities=11% Similarity=0.160 Sum_probs=78.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 043758 768 NGHIAAGEIDQAIGLFNQMNADGCVPDK-----TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK-KATYEHLLECFC 841 (918)
Q Consensus 768 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 841 (918)
.-+.+.|++++|..-|..++.. +++.. ..|..-.-++.+.+.++.|+.-..+.++ +.|+ ...+..-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHH
Confidence 4467889999999999988885 33322 3455555567788888888888888775 3443 234444455788
Q ss_pred ccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHH--hcCCHHHHHHHHHHHHhCC
Q 043758 842 ANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILC--QEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 842 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~ 895 (918)
+.-.+++|++-++++++.. |....+....+++=- ...+-..-.+++..+++.|
T Consensus 180 k~ek~eealeDyKki~E~d-Ps~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD-PSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC-cchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888999999999988876 444444444333322 2222222334555666555
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.04 E-value=39 Score=39.93 Aligned_cols=45 Identities=11% Similarity=0.145 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh--cHHHHHHHHHHHh
Q 043758 78 IEDALRHFDRLISKNIVPIKLACVSILRGLFAEE--KFLEAFDYFIKIC 124 (918)
Q Consensus 78 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 124 (918)
+...-++....+.+. .|+ ...-.++.+|.+.+ ..++|+....+..
T Consensus 773 v~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 773 VNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred HHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344444444444433 123 23446667777666 5566655555544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.91 E-value=19 Score=36.15 Aligned_cols=132 Identities=20% Similarity=0.253 Sum_probs=73.7
Q ss_pred cHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc--C----CChhHHHHHHHHHHhcCCCC--CCcccHHHHHHHHhccCc
Q 043758 112 KFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY--K----GFLDEVLEVVNIMRKKKGLV--PALHPYKSLFYALCKNIR 183 (918)
Q Consensus 112 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~ 183 (918)
.+++.+.+++.+.+.|+..+..+|-.....+.. . ....+|.++|+.|.++.++- ++..++..++.. ...+
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 356667888888888888776655543333322 1 23556788888888744432 334444455433 3333
Q ss_pred ----hHHHHHHHHHHHhCCCCCChh-hHHHHHHHHhcC-CC--hHHHHHHHHHHHhcCCCCChhhHHHHH
Q 043758 184 ----TVEAESFAREMESQGFYVDKL-MYTSLINGYCSN-RN--MKMAMRLFFRMLKTGCEPDSYTCNTLI 245 (918)
Q Consensus 184 ----~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~-g~--~~~A~~~~~~m~~~~~~p~~~~~~~ll 245 (918)
.+.++.+|+.+.+.|+..... -+.+-+-++... .. ..++.++++.+.+.|+++....|..+.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 245677777777766653322 222222222221 11 346667777777777776666555543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.49 E-value=25 Score=36.81 Aligned_cols=118 Identities=14% Similarity=0.028 Sum_probs=71.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-------
Q 043758 760 QVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP---DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK------- 829 (918)
Q Consensus 760 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------- 829 (918)
..++..+...+.+.|.++.|...+..+...+..+ ++.....-+..+-..|+..+|+..+++..+..+...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 3467777888888899998888888877642111 334444556677778888888888877765211111
Q ss_pred -------------------HHHHHHHHHHHH-------cc------CChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 043758 830 -------------------KATYEHLLECFC-------AN------CLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQ 877 (918)
Q Consensus 830 -------------------~~~~~~l~~~~~-------~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 877 (918)
...-.....++. .. +..+++...+..+.... |.....|..++..+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD-PSWEKAWHSWALFNDK 304 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC-hhHHHHHHHHHHHHHH
Confidence 000111111222 22 56677778888877665 5566677776666553
Q ss_pred c
Q 043758 878 E 878 (918)
Q Consensus 878 ~ 878 (918)
.
T Consensus 305 ~ 305 (352)
T PF02259_consen 305 L 305 (352)
T ss_pred H
Confidence 3
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.46 E-value=4.4 Score=37.01 Aligned_cols=97 Identities=11% Similarity=0.068 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH--
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV--TFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNT-- 800 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~-- 800 (918)
..+..+.+.|.+.|+.+.|++.|.++.+....|... .+..+|......+++..+.....++...--.+ |...-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 567778888888888888888888887765544433 45667777777788888877777765541111 1111111
Q ss_pred --HHHHHHHcCChhHHHHHHHHHH
Q 043758 801 --LLKGLCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 801 --l~~~~~~~g~~~~A~~~~~~~~ 822 (918)
-.-.+...+++.+|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1112345567777766665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.80 E-value=6.2 Score=35.18 Aligned_cols=139 Identities=14% Similarity=0.186 Sum_probs=87.5
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 744 AYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 744 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
-.+++..+.+.+++|+...+..+++.+.+.|++... ..+++.++-+|.......+-.+. +.+..+.++--+|.+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 356677777888999998999999999999886544 44455566677665555443332 233334443333332
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043758 824 RGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGR 896 (918)
Q Consensus 824 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 896 (918)
. +. ..+..++..+...|++-+|+++....... +......+..+-.+.++...-..+++-..+++.
T Consensus 87 R-L~---~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~ 151 (167)
T PF07035_consen 87 R-LG---TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERNL 151 (167)
T ss_pred H-hh---hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhH
Confidence 1 00 13455667778889999999998875332 222234566666677777777777777766653
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.74 E-value=20 Score=34.61 Aligned_cols=49 Identities=20% Similarity=0.059 Sum_probs=26.1
Q ss_pred CChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043758 589 GMVDLGCMYLDRMLADGFV-PNVVLYTALINHFLRAGEFEFASRLENLMV 637 (918)
Q Consensus 589 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 637 (918)
+....+...+......... .....+......+...+++..+...+....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKAL 86 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4445555555555443211 124555556666666666666666666554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.67 E-value=2.6 Score=41.08 Aligned_cols=59 Identities=20% Similarity=0.208 Sum_probs=33.5
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 043758 171 YKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRML 230 (918)
Q Consensus 171 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 230 (918)
+..++..+..+|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+.+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334455555555666666666665555433 55556666666666666666666655554
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.65 E-value=23 Score=40.11 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=10.6
Q ss_pred HHHHccCChhHHHHHHHH
Q 043758 733 LLLCGVGRMDDAYDHFQM 750 (918)
Q Consensus 733 ~~~~~~g~~~~A~~~~~~ 750 (918)
..+.-.|+++.|++++-+
T Consensus 266 ~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh
Confidence 344445777777777665
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.25 E-value=2.7 Score=37.84 Aligned_cols=95 Identities=21% Similarity=0.186 Sum_probs=57.6
Q ss_pred hhhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHH
Q 043758 2 QLINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDA 81 (918)
Q Consensus 2 ~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A 81 (918)
.||.+|.+++|..-+..++...|+... ..-.+|..+ .| -++.+.++.+.|
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~---------------------e~rsIly~N----ra-----aa~iKl~k~e~a 153 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTST---------------------EERSILYSN----RA-----AALIKLRKWESA 153 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccH---------------------HHHHHHHhh----hH-----HHHHHhhhHHHH
Confidence 367777777777777777777665221 111111000 01 112566677777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC
Q 043758 82 LRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAG 127 (918)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 127 (918)
+.-...+++.++. ...+......+|.+..++++|+.-|.++.+..
T Consensus 154 I~dcsKaiel~pt-y~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 154 IEDCSKAIELNPT-YEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHHhhHhcCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 7777777776643 23344455567777888888888888888764
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.08 E-value=14 Score=32.56 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=9.4
Q ss_pred HhcCCChHHHHHHHHHHHh
Q 043758 213 YCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 213 ~~~~g~~~~A~~~~~~m~~ 231 (918)
+++.|++.+|+.+|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3445555555555555443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.08 E-value=4.8 Score=36.73 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=61.8
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCccHhhHHH
Q 043758 204 LMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDS--YTCNTLIHGFFKMGLFDKGWVLYSQMSDW---GFQPNMVTDLI 278 (918)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~ 278 (918)
..+..+...|++.|+.+.|++.|.++.+....+.. ..+..+++.....+++..+...+.+.... +-+++......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45778888889999999999999998876444332 35667778888888888888887776543 21222111111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHh
Q 043758 279 MIS--NYCREGEVDAALMLLNSKV 300 (918)
Q Consensus 279 l~~--~~~~~g~~~~A~~~~~~~~ 300 (918)
... .+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1334567777777775543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.41 E-value=1.4 Score=42.96 Aligned_cols=89 Identities=12% Similarity=-0.049 Sum_probs=40.9
Q ss_pred HhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchH
Q 043758 106 GLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTV 185 (918)
Q Consensus 106 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 185 (918)
-|.++|++++|++.|....... +.|..++..-..+|.+...+..|..=.+.... .. ..-...|...+.+--..|+.+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-Ld-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-LD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-hh-HHHHHHHHHHHHHHHHHhhHH
Confidence 3455555555555555544332 22445555555555555555444444444332 00 011223444444444445555
Q ss_pred HHHHHHHHHHhC
Q 043758 186 EAESFAREMESQ 197 (918)
Q Consensus 186 ~a~~~~~~~~~~ 197 (918)
+|.+-++...+.
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 555555555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.33 E-value=0.81 Score=28.42 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=14.3
Q ss_pred HHHHHHHhhchhcHHHHHHHHHHH
Q 043758 100 CVSILRGLFAEEKFLEAFDYFIKI 123 (918)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~ 123 (918)
|..+..+|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666663
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.97 E-value=19 Score=32.16 Aligned_cols=132 Identities=14% Similarity=0.178 Sum_probs=64.3
Q ss_pred HHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCC
Q 043758 119 YFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQG 198 (918)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 198 (918)
..+.+...+++|+...+..++..+.+.|.+....+++.. ++-+|.......+-. -.+.+..+.++--+|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs--~~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLS--LGNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHH--hHccChHHHHHHHHHHHH-
Confidence 334444556666666666666666666665444443332 333343333222211 112334455555555553
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 199 FYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 199 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
=...+..++..+...|++-+|+++....... +......++.+..+.++...--.+++-..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2224556666666777777777766554221 22223344555555555444444444433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.97 E-value=0.74 Score=27.97 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 866 SNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 866 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
..+..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999887654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.61 E-value=52 Score=36.74 Aligned_cols=346 Identities=13% Similarity=0.078 Sum_probs=180.5
Q ss_pred hcCCCCChhhHHH-----HHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCH---HHHHHHHHHHhhC
Q 043758 231 KTGCEPDSYTCNT-----LIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEV---DAALMLLNSKVSS 302 (918)
Q Consensus 231 ~~~~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~ 302 (918)
..|++.+..-|.. ++.-+...+.+..|.++-..+...-..- ..++......+.+..+. +.+..+-+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3455555544443 4556667778888888777765332122 45666666666655322 2223333333321
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCCh
Q 043758 303 NLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVA----PDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDP 378 (918)
Q Consensus 303 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 378 (918)
-....+|..+..-....|+++-|..+++.=...+.. .+...+...+.-+...+|.+...+++..+.+.-
T Consensus 504 --~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~----- 576 (829)
T KOG2280|consen 504 --LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL----- 576 (829)
T ss_pred --CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH-----
Confidence 134566777777777888888888776532211100 122234445555556666666555555444321
Q ss_pred hhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHH--------HHHccCChHHHHHHHH--HHHHC-CCCCC
Q 043758 379 LARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYIS--------ALCKGGKYEKAYVCLF--QLVNF-GYRPL 447 (918)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--------~~~~~g~~~~A~~~~~--~~~~~-~~~~~ 447 (918)
....|.......| .....|..+++ .+..+++-.+++..|. ..... .+.+-
T Consensus 577 ------------------~~s~l~~~l~~~p-~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r 637 (829)
T KOG2280|consen 577 ------------------NRSSLFMTLRNQP-LALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGR 637 (829)
T ss_pred ------------------HHHHHHHHHHhch-hhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhccc
Confidence 1111111111111 11111221111 1112222222222221 11100 01122
Q ss_pred cccHHHHHHHHHhcCChh-hHHHHHHHhhcccCccccCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043758 448 VFTCNTLIKCFYQVGFLE-GANAIVELMQDTEGNCKWGNLDSALDILDQMEV-RGPKPSVAIYDAIIGHLCKEKRILEAE 525 (918)
Q Consensus 448 ~~~~~~li~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 525 (918)
.........++++..... ++..+- +...-+.+.+.+.. .|......+.+--+.-+...|+..+|.
T Consensus 638 ~~~lk~~a~~~a~sk~~s~e~ka~e-------------d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ 704 (829)
T KOG2280|consen 638 IPALKTAANAFAKSKEKSFEAKALE-------------DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAE 704 (829)
T ss_pred chhHHHHHHHHhhhhhhhhHHHHHH-------------HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHH
Confidence 223333444444433311 111111 11112222222222 122223334455566677789999999
Q ss_pred HHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 526 DMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADG 605 (918)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 605 (918)
++-.+.. -||-..|-.-+.++...+++++-+++-+... .+.-|...+.+|.+.|+.++|.+++.+...
T Consensus 705 ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-- 772 (829)
T KOG2280|consen 705 QLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-- 772 (829)
T ss_pred HHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC--
Confidence 9888776 6888999999999999999988666554432 245677889999999999999999876532
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043758 606 FVPNVVLYTALINHFLRAGEFEFASRLENL 635 (918)
Q Consensus 606 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 635 (918)
.. -...+|.+.|++.+|.+.--+
T Consensus 773 ---l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 773 ---LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ---hH----HHHHHHHHhccHHHHHHHHHH
Confidence 11 467889999999998876544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=86.93 E-value=0.84 Score=25.77 Aligned_cols=24 Identities=21% Similarity=0.054 Sum_probs=19.7
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHH
Q 043758 866 SNCNWLLNILCQEKHFHEAQIVLD 889 (918)
Q Consensus 866 ~~~~~l~~~~~~~g~~~~A~~~~~ 889 (918)
.....++.++...|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356778899999999999988875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.64 E-value=4.5 Score=43.10 Aligned_cols=132 Identities=22% Similarity=0.185 Sum_probs=79.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 043758 134 SYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGY 213 (918)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 213 (918)
..+.++..+.++|..++|+++-.. |+ . -.....+.|+++.|.++..+.. +..-|..|..+.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D--------~d--~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTD--------PD--Q---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCC--------hh--h---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 445566667777777766654211 11 1 2233446677777776654432 456688888888
Q ss_pred hcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHH
Q 043758 214 CSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAAL 293 (918)
Q Consensus 214 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 293 (918)
...|++..|.+.|.+... |..|+-.+...|+.+....+-....+.| ..| ...-+|...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNN-----LAFLAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHH
Confidence 888888888888766542 4455666666777666555555555554 222 2233456677777777
Q ss_pred HHHHHH
Q 043758 294 MLLNSK 299 (918)
Q Consensus 294 ~~~~~~ 299 (918)
+++.+-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 776543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=86.48 E-value=67 Score=36.84 Aligned_cols=228 Identities=13% Similarity=0.028 Sum_probs=113.5
Q ss_pred hhhhhhHhcCChHHHHHHHHHHHhCCCCCChh-------hHHHHH-HHhhchhcHHHHHHHHHHHhhcC----CCCcchh
Q 043758 67 LYQNDFVALGNIEDALRHFDRLISKNIVPIKL-------ACVSIL-RGLFAEEKFLEAFDYFIKICNAG----VDLNCWS 134 (918)
Q Consensus 67 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~ 134 (918)
++.+.+.-..++.+|..+..++...-..|+.. .|+++- .+....|++++|.++-+.....- ..+....
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 33444566677777777777665432222211 233222 12345678888888777765432 1233445
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHH-----HHHHhccCc--hHHHHHHHHHHHhC---CCC---C
Q 043758 135 YNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSL-----FYALCKNIR--TVEAESFAREMESQ---GFY---V 201 (918)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-----l~~~~~~g~--~~~a~~~~~~~~~~---~~~---~ 201 (918)
+..+..+..-.|++++|+.+.....+ .--.-+...+... ...+...|. +.+.+..|...... ..+ +
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 66666777778888888877766554 2112233333222 223455663 33344444444332 111 1
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcC--CCCCh--h--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc----
Q 043758 202 DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTG--CEPDS--Y--TCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQP---- 271 (918)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~--~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---- 271 (918)
-..++..+..++.+ ++.+..-.....+.| ..|.. . .+..|+......|++++|...++++......+
T Consensus 579 ~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~ 655 (894)
T COG2909 579 LVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHV 655 (894)
T ss_pred HHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 22344555555554 333333333322211 12222 2 22356667778888888888877776543222
Q ss_pred cHhhHHHHH--HHHHhcCCHHHHHHHHHH
Q 043758 272 NMVTDLIMI--SNYCREGEVDAALMLLNS 298 (918)
Q Consensus 272 ~~~~~~~l~--~~~~~~g~~~~A~~~~~~ 298 (918)
+..+....+ ......|+...|.....+
T Consensus 656 ~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 656 DYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 211111122 223455777776666554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.21 E-value=1.1 Score=27.30 Aligned_cols=30 Identities=17% Similarity=-0.032 Sum_probs=25.3
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 866 SNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 866 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.+|..++.+|...|++++|...+++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468889999999999999999999988754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=86.06 E-value=69 Score=36.55 Aligned_cols=49 Identities=6% Similarity=-0.154 Sum_probs=28.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHH
Q 043758 513 GHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFE 564 (918)
Q Consensus 513 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 564 (918)
..+...|....|...+..+... .+......+.......|.++.++....
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 4455667777777777776653 233334444444455666666655443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.50 E-value=68 Score=35.98 Aligned_cols=116 Identities=11% Similarity=0.050 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHCCCCCcHHHHHHHHH--H-HHcCCChHHHHHHHHHHHh-------CCCCCCchhHHHHHHHHHhcC-
Q 043758 521 ILEAEDMFKRMLKAGIDPDEVFFTTMIN--G-YLQNRKPIEACQLFEKMKE-------NSVQPGSYPYTALISGLVKKG- 589 (918)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~-~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g- 589 (918)
...|.+.++...+.|. .........+. + +....+++.|+..|+.+.+ ++ .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 3456666666665541 11111111111 2 3345667777777776655 44 2234455555665532
Q ss_pred ----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCC
Q 043758 590 ----MVDLGCMYLDRMLADGFVPNVVLYTALINHFLR-AGEFEFASRLENLMVTNQI 641 (918)
Q Consensus 590 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~ 641 (918)
+.+.|..++....+.| .|+....-..+.-... ..+...|.++|....+.|.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 4566778887777766 3343333222221111 1345677777777765543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.49 E-value=25 Score=31.01 Aligned_cols=50 Identities=24% Similarity=0.169 Sum_probs=22.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCcc-HhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043758 250 KMGLFDKGWVLYSQMSDWGFQPN-MVTDLIMISNYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 250 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 301 (918)
..++.+++..++..+... .|. ...-..-...+...|++.+|..+|+++..
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 444555555555555433 222 11111222334455555555555555544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.36 E-value=24 Score=32.10 Aligned_cols=86 Identities=8% Similarity=-0.023 Sum_probs=38.0
Q ss_pred HHHcCCChhHHHHHHHHHHhcCCCCCCcccHH-----HHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 043758 141 GLCYKGFLDEVLEVVNIMRKKKGLVPALHPYK-----SLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCS 215 (918)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 215 (918)
.+...|++++|...++.... .|....+. .|.+...+.|.+++|...++.....++ .......-.+++..
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 34455555555555555543 11222222 222334445555555555555444322 11112222344555
Q ss_pred CCChHHHHHHHHHHHhc
Q 043758 216 NRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 216 ~g~~~~A~~~~~~m~~~ 232 (918)
.|+-++|+.-|+...+.
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 55555555555555544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.81 E-value=38 Score=32.99 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCCHHHHH
Q 043758 542 FFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLAD-----GFVPNVVLYT 614 (918)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~ 614 (918)
+++.....|..+|.+.+|.++.+..+..+ +.+...+-.++..+...|+--.+.+-++++.+. |+..+-.+++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 34556667888888888888888887764 556677777888888888877777777666443 6555554443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.10 E-value=2.4 Score=27.69 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043758 869 NWLLNILCQEKHFHEAQIVLDVMHKRGR 896 (918)
Q Consensus 869 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 896 (918)
..|+.+|...|+.+.|+++++.+...|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4588999999999999999999986553
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.03 E-value=2.3 Score=25.79 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=11.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHH
Q 043758 728 YNDIFLLLCGVGRMDDAYDHFQMMKR 753 (918)
Q Consensus 728 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 753 (918)
|..+..+|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 34444444444444444444444444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.72 E-value=2.3 Score=25.77 Aligned_cols=29 Identities=17% Similarity=0.008 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 866 SNCNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 866 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
.+|..++.+|...|++++|...+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46788999999999999999999887653
|
... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.36 E-value=2.2 Score=27.36 Aligned_cols=29 Identities=24% Similarity=0.177 Sum_probs=23.0
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 866 SNCNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 866 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
.+++.|+.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35778899999999999999999887653
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.33 E-value=10 Score=37.07 Aligned_cols=124 Identities=17% Similarity=0.116 Sum_probs=77.9
Q ss_pred hHHHHHhCCChhHHHHHHHHHHh----------cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH----
Q 043758 696 AFSAVFSNGKKGTVQKIVLKVKD----------IEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV---- 761 (918)
Q Consensus 696 ~~~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---- 761 (918)
+.+.+.....++.-.....++.. .|.+....+...++..-....++++++..+-++..+ |+..
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs---~~a~~~~~ 101 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHS---PNAWYLRN 101 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcC---cchhhhcc
Confidence 45555556666665555534432 233334455555555555667788888877777653 3321
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 762 -TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 762 -~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
+-..+++.|. .-++++++.+...=++.|+-||..+.+.+++.+.+.+++.+|.++...|..
T Consensus 102 ~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 102 WTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 1122333332 346777887777777778888888888888888888888888888777664
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.28 E-value=8 Score=33.33 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=58.3
Q ss_pred HHHHHHHHHH---HHcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHH
Q 043758 796 TVYNTLLKGL---CQAGRLSHVFSVFYSMHKRGFVPKKA---TYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCN 869 (918)
Q Consensus 796 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 869 (918)
...+.|++.. ...++.+++..++..|.- +.|+.. ++...+ +...|++.+|..++.++.+.+ +-.+-.-.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~-~~~p~~kA 82 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA-GAPPYGKA 82 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC-CCchHHHH
Confidence 4445555443 457888899998888874 566554 444444 578889999999999887654 22233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 870 WLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 870 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.++.++...|+.+ =+..-+.+++.|
T Consensus 83 L~A~CL~al~Dp~-Wr~~A~~~le~~ 107 (153)
T TIGR02561 83 LLALCLNAKGDAE-WHVHADEVLARD 107 (153)
T ss_pred HHHHHHHhcCChH-HHHHHHHHHHhC
Confidence 5666666666633 123444445555
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.89 E-value=50 Score=31.64 Aligned_cols=211 Identities=17% Similarity=0.200 Sum_probs=100.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHC---CCC--CCcccHHHHHHHHHhcCChhhHHHHHHHhhcc--------------
Q 043758 417 TIYISALCKGGKYEKAYVCLFQLVNF---GYR--PLVFTCNTLIKCFYQVGFLEGANAIVELMQDT-------------- 477 (918)
Q Consensus 417 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------------- 477 (918)
..+|....+.+++++....+++++.- .+. -+..+.++++.-.+.+.+.+--.++++.-...
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 44555555666666666665555421 111 12234445554444444443333333322221
Q ss_pred ----cCccccCChHHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCcHH
Q 043758 478 ----EGNCKWGNLDSALDILDQMEVRGPK-----------PSVAIYDAIIGHLCKEKRILEAEDMFKRMLKA-GIDPDEV 541 (918)
Q Consensus 478 ----~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~ 541 (918)
..+...+.+..-..++.++...-.. .-..+|..-+..|....+-.....++++.... ..-|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 3344445555555565555432110 02346777788888888888888888876642 2235544
Q ss_pred HHHHHHHHH-----HcCCChHHHHHHH-HHHHh---CCCCCCchh---HHHHHHHHHhcCChhHHHHHHHHHHhC--CCC
Q 043758 542 FFTTMINGY-----LQNRKPIEACQLF-EKMKE---NSVQPGSYP---YTALISGLVKKGMVDLGCMYLDRMLAD--GFV 607 (918)
Q Consensus 542 ~~~~l~~~~-----~~~~~~~~A~~~~-~~~~~---~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~ 607 (918)
... +|+-| .+.|.+++|..-| +.... .| .|...+ |..|...+.+.|-- -|+.-... .-.
T Consensus 229 ImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNd 301 (440)
T KOG1464|consen 229 IMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKND 301 (440)
T ss_pred HHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCC
Confidence 433 33333 4567787775443 33332 23 222221 33344444444310 01110111 123
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043758 608 PNVVLYTALINHFLRAGEFEFASRLENL 635 (918)
Q Consensus 608 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 635 (918)
|.......++.+|.. +++.+..+++..
T Consensus 302 PEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 556677778887754 455554444443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.84 E-value=10 Score=29.67 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043758 779 AIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 779 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 822 (918)
+.+-++.+....+.|++....+.+++|.+-+++.-|+++++-..
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.62 E-value=1.9 Score=25.83 Aligned_cols=29 Identities=17% Similarity=0.070 Sum_probs=25.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 867 NCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 867 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
++..++.++.+.|++++|.+.++++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 46778999999999999999999988754
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.81 E-value=7.9 Score=30.31 Aligned_cols=47 Identities=11% Similarity=0.038 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhC
Q 043758 813 HVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 813 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
++.+-++.+....+.|++.+..+.+.+|.|.+++..|.++++....+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45556666766678899999999999999999999999999987633
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.58 E-value=11 Score=33.80 Aligned_cols=108 Identities=13% Similarity=0.020 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh----------cHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCC--
Q 043758 79 EDALRHFDRLISKNIVPIKLACVSILRGLFAEE----------KFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKG-- 146 (918)
Q Consensus 79 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 146 (918)
+.|.+-++.....+|. |...++....+|.... -+++|+.-|++++... |....++..+..++...+
T Consensus 8 E~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhh
Confidence 5566666665555544 6666666666654443 3455666666666664 334467777777776543
Q ss_pred --C-------hhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhC
Q 043758 147 --F-------LDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 147 --~-------~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 197 (918)
+ +++|.+.|+.... ..|+...|+.-+.+.. .|-++..++.++
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred cCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 3 3334444444433 4577777766665432 345555555554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.53 E-value=21 Score=28.38 Aligned_cols=60 Identities=13% Similarity=0.229 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043758 778 QAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLE 838 (918)
Q Consensus 778 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 838 (918)
+..+-++.+....+.|++....+.+.+|.+-+++..|+++++-...+ ..+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 44455555555567777777777777777777777777777766643 2222225555543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 2e-14
Identities = 110/691 (15%), Positives = 227/691 (32%), Gaps = 205/691 (29%)
Query: 41 MRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVA---LGNIEDALRHFDRLISK----NI 93
M F++G + K ++ ++++ FV +++D + ++SK +I
Sbjct: 7 MDFETGEHQYQYKDILS---------VFEDAFVDNFDCKDVQDMPK---SILSKEEIDHI 54
Query: 94 VPIKLACVSILRGLF---------AEEKFLE---AFDY-FIKICNAGVDLNCWSYNVLID 140
+ K A LR LF +KF+E +Y F+ ++
Sbjct: 55 IMSKDAVSGTLR-LFWTLLSKQEEMVQKFVEEVLRINYKFL--------MSPIKTEQRQP 105
Query: 141 GLCYKGFLDEVLEVVNIMRK-KKGLVPALHPYKSLFYALC-----KNI---------RTV 185
+ + ++++ + N + K V L PY L AL KN+ +T
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 186 EAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLI 245
A + Q K+ + +L N ++M +L +++ ++ N +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 246 HGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLL----NSKVS 301
+ + L+ Y L++L N+K
Sbjct: 226 R--------------IHSIQAE------LRRLLKSKPYEN------CLLVLLNVQNAKAW 259
Query: 302 SNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQH 361
+ A ++ C +L R +V + ++ + I L +
Sbjct: 260 N--AFNLSCKILLT------TRFKQV--------TDFLSAAT-TTHISLDHHSMTLTPDE 302
Query: 362 ALMLLCEFAKIG--------CGIDPLARS-ISATLNPTGDLCQEIELLLR----KIVKSD 408
LL ++ +P S I+ ++ + L K V D
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI---------RDGLATWDNWKHVNCD 353
Query: 409 PKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGAN 468
KL + ++ L + +Y K + L VF + I + L
Sbjct: 354 -KLTTI-IESSLNVL-EPAEYRKMFDRLS----------VFPPSAHIP--TIL--LS--- 393
Query: 469 AIVELMQDTEGNCKWGNLDS--ALDILDQME-----VRGPKPS-VAIYDAIIGHLCK--- 517
++ W ++ + +++++ + PK S ++I + K
Sbjct: 394 -LI-----------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 518 ----EKRILEAEDMFKRMLKAGIDP---DEVFFTTMINGY-LQNRKPIEACQLFEKMK-- 567
+ I++ ++ K + P D+ F++ + G+ L+N + E LF +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--GHHLKNIEHPERMTLFRMVFLD 499
Query: 568 ----ENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALIN---HF 620
E ++ S + A SG + + L Y + N Y L+N F
Sbjct: 500 FRFLEQKIRHDSTAWNA--SGSILNTLQQLK-FYKPYI-----CDNDPKYERLVNAILDF 551
Query: 621 LRAGEFEFASRLENLMVTNQIEFDLIAYIAL 651
L E ENL+ + ++ + IAL
Sbjct: 552 LPKIE-------ENLICS---KYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 2e-04
Identities = 48/360 (13%), Positives = 90/360 (25%), Gaps = 91/360 (25%)
Query: 576 YPYTALISGLVKKGMVDLGCMYLDRMLADGF----------VPNVVLYT-ALINHFLRAG 624
Y Y ++S + + C + M + V T L L
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 625 E--------------FEF-ASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVN 669
E ++F S ++ Q YI + K +V+
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKT--EQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVS 132
Query: 670 RCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVL---KVKDIEFMPNLY 726
R + KL+Q + + V +G G+ K + +
Sbjct: 133 R------LQPYLKLRQA--LLELRPAKN--VLIDGVLGS-GKTWVALDVCLSYKVQCK-- 179
Query: 727 LYNDIFLLLCGVGRMDDAYDHFQMMKR--EGLRPNQVTFC-ILINGHIAAGEIDQAI-GL 782
+ IF L + + +M+++ + PN + N + I + L
Sbjct: 180 MDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 783 FNQMNADGC------VPDKTVYN-------TLL----KGLCQAGRLSHVFSVFYSMHKRG 825
+ C V + +N LL K + + + H
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 826 FVPKKATYEHLLECFCANCLSIP--------------AFNMFKEMIVHDHVPCLSNCNWL 871
P + L ++ E I D + NW
Sbjct: 298 LTPDEV-----KSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAESI-RDG-LATWD-NWK 348
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.4 bits (173), Expect = 1e-12
Identities = 24/201 (11%), Positives = 60/201 (29%), Gaps = 4/201 (1%)
Query: 149 DEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAES---FAREMESQGFYVDKLM 205
+V + + + L + F + A + + M
Sbjct: 108 LDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDM 167
Query: 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKG-WVLYSQM 264
Y +++ G+ K + + F + G PD + + + QM
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 227
Query: 265 SDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRL 324
S G + + +++S R + A + + P + L+ +Y +
Sbjct: 228 SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGR 287
Query: 325 MEVDELYKKMLANRVAPDHLL 345
+ +L+ + + + L
Sbjct: 288 VSYPKLHLPLKTLQCLFEKQL 308
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.9 bits (164), Expect = 1e-11
Identities = 24/144 (16%), Positives = 44/144 (30%), Gaps = 1/144 (0%)
Query: 722 MPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIG 781
+ L +YN + L G + M+K GL P+ +++ + + I
Sbjct: 162 LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
Query: 782 -LFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECF 840
QM+ +G LL +A L V V + +P LL
Sbjct: 222 RCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281
Query: 841 CANCLSIPAFNMFKEMIVHDHVPC 864
A + + + +
Sbjct: 282 YAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.8 bits (161), Expect = 2e-11
Identities = 18/177 (10%), Positives = 48/177 (27%), Gaps = 4/177 (2%)
Query: 728 YNDIFLLLCGVGRMDDAY---DHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFN 784
F ++ A+ +++ + ++ G G + + +
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189
Query: 785 QMNADGCVPDKTVYNTLLKGLCQAGRLSH-VFSVFYSMHKRGFVPKKATYEHLLECFCAN 843
+ G PD Y L+ + + + + + M + G + LL
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249
Query: 844 CLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRLPCT 900
+ + + +P N + LL + + + + L
Sbjct: 250 TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.8 bits (161), Expect = 3e-11
Identities = 22/183 (12%), Positives = 60/183 (32%), Gaps = 10/183 (5%)
Query: 481 CKWGNLDSALDILD---QMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGID 537
L A +L + ++ +Y+A++ ++ E + + AG+
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
Query: 538 PDEVFFTTMINGYLQNRKPIEACQ-LFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCM 596
PD + + + + + + E+M + ++ + L+S + ++
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 597 YLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLE------NLMVTNQIEFDLIAYIA 650
+P V + L+ +L + Q+ +L + +
Sbjct: 258 VKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVC 317
Query: 651 LVS 653
+VS
Sbjct: 318 VVS 320
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.1 bits (141), Expect = 5e-09
Identities = 17/138 (12%), Positives = 42/138 (30%), Gaps = 3/138 (2%)
Query: 524 AEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALIS 583
A + +A P E ++ + + + A
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 584 GLVKKGMVDLGCMYLDR---MLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQ 640
+ + L L + + +Y A++ + R G F+ + ++
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 641 IEFDLIAYIALVSGVCRR 658
+ DL++Y A + + R+
Sbjct: 196 LTPDLLSYAAALQCMGRQ 213
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.9 bits (125), Expect = 5e-07
Identities = 23/212 (10%), Positives = 53/212 (25%), Gaps = 3/212 (1%)
Query: 30 LSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDA---LRHFD 86
L+ A + D + + Q LL + + + A L
Sbjct: 95 LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH 154
Query: 87 RLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKG 146
K + +++ G + F E + +AG+ + SY + + +
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
Query: 147 FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMY 206
+E ++GL L + +
Sbjct: 215 QDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNT 274
Query: 207 TSLINGYCSNRNMKMAMRLFFRMLKTGCEPDS 238
+ L+ + +L + C +
Sbjct: 275 SKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.0 bits (102), Expect = 2e-04
Identities = 18/182 (9%), Positives = 47/182 (25%), Gaps = 21/182 (11%)
Query: 392 DLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTC 451
L + ++ + L + + + G +++ LF + + G P + +
Sbjct: 144 PLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203
Query: 452 NTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAI 511
++C + G L+QM G K +
Sbjct: 204 AAALQCMGRQDQDAGT---------------------IERCLEQMSQEGLKLQALFTAVL 242
Query: 512 IGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSV 571
+ + + + P V + ++ + +L +K
Sbjct: 243 LSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302
Query: 572 QP 573
Sbjct: 303 LF 304
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 918 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.55 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.55 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.55 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.55 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.53 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.53 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.51 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.47 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.46 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.46 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.45 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.45 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.43 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.42 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.41 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.37 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.34 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.34 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.34 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.34 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.33 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.33 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.31 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.3 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.27 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.26 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.24 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.18 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.18 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.16 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.15 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.15 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.14 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.1 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.09 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.09 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.05 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.96 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.91 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.9 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.88 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.88 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.88 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.87 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.87 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.86 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.83 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.82 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.82 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.82 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.81 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.8 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.8 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.78 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.77 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.75 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.75 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.75 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.74 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.73 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.72 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.71 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.71 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.67 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.65 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.64 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.58 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.57 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.55 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.55 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.54 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.52 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.48 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.47 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.46 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.44 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.43 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.43 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.42 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.41 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.4 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.39 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.37 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.37 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.36 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.36 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.35 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.35 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.34 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.34 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.31 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.3 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.28 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.28 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.27 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.27 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.27 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.26 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.23 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.21 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.2 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.18 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.18 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.18 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.17 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.14 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.13 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.13 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.12 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.12 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.1 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.09 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.07 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.07 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.05 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.04 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.04 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.03 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.96 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.95 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.95 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.93 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.92 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.91 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.91 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.9 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.9 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.89 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.88 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.85 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.84 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.81 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.8 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.8 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.79 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.79 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.79 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.74 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.74 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.68 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.65 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.65 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.65 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.64 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.63 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.62 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.58 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.55 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.51 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.45 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.4 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.39 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.36 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.3 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.17 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.13 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.09 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.08 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.95 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.92 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.89 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.8 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.62 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.38 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.3 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.27 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.27 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.2 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.14 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.1 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.1 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.02 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.83 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.66 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.62 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.24 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.18 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.18 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.08 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.06 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.02 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.82 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.22 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.06 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.93 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.92 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.87 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.58 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.53 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.8 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.52 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.41 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.12 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.35 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.43 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.18 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.25 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.71 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.64 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 84.14 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 83.15 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.3 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.11 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.17 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.01 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=350.76 Aligned_cols=151 Identities=9% Similarity=0.000 Sum_probs=102.6
Q ss_pred hccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 043758 179 CKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGW 258 (918)
Q Consensus 179 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 258 (918)
...|.+..+...+..+.. ++...|+.++..|.+.|++++|+.+|++|.+. .|+..++..++.+|...|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 344555555555554432 37778888888888888888888888888754 567788888888888888888888
Q ss_pred HHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC---------------CCCCCcchHHHHHHHHHhcCC
Q 043758 259 VLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSS---------------NLAPSVHCYTVLIDALYKHNR 323 (918)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~g~ 323 (918)
.+|+.+... +++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 888887643 677888888888888888888888888853211 122346677777777777777
Q ss_pred hhHHHHHHHHHHhC
Q 043758 324 LMEVDELYKKMLAN 337 (918)
Q Consensus 324 ~~~a~~~~~~~~~~ 337 (918)
+++|.++|++|.+.
T Consensus 216 ~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 216 FDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-35 Score=331.83 Aligned_cols=524 Identities=11% Similarity=-0.015 Sum_probs=365.6
Q ss_pred chhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHH
Q 043758 109 AEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAE 188 (918)
Q Consensus 109 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 188 (918)
..|.+..+...+..+. .++...|+.++..|.+.|++++|+.+|+++.. ..|+..++..++.+|.+.|++++|.
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHH
Confidence 3444444444443321 35667778888888888888888888888765 3456677777777788888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 189 SFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWG 268 (918)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 268 (918)
.+|+.+... +++..+++.++.+|.+.|++++|+.+|+++. |+.. ...++...++ ...+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~-----------~~~~ 195 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLM-----------QDGG 195 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------C-----------CCSS
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----cccccccccc-----------cccc
Confidence 888776543 4477778888888888888888888777422 2210 0001111111 1123
Q ss_pred CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHH--HH-HHHHHhCCCCCChhh
Q 043758 269 FQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVD--EL-YKKMLANRVAPDHLL 345 (918)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~~ 345 (918)
.+++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...+..+...+...+..+.+. .+ +..+...+..+...+
T Consensus 196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 45567788888888888888888888888887754 234445555554443332222211 11 444444444444555
Q ss_pred HHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHc
Q 043758 346 SFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCK 425 (918)
Q Consensus 346 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 425 (918)
|..++..+.+.|+++.|..++..+.+. +.+..+|+.++..|.+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~-------------------------------------~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL-------------------------------------EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG-------------------------------------GGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC-------------------------------------CchHHHHHHHHHHHHH
Confidence 666666777777776666666544432 1334788999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCH
Q 043758 426 GGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSV 505 (918)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 505 (918)
.|++++|+.+|+++.+.+ +.+..++..++.++...| ++++|..+++++.+.. +.+.
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESG----------------------EKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHT----------------------CHHHHHHHHHHHHHHC-TTSH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhC----------------------CHHHHHHHHHHHHhhC-cccH
Confidence 999999999999998765 457778888888887665 5566667777776553 4478
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHH
Q 043758 506 AIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGL 585 (918)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 585 (918)
.+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 899999999999999999999999998754 4568899999999999999999999999998874 45778899999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhccccccc
Q 043758 586 VKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKW 665 (918)
Q Consensus 586 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 665 (918)
.+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------------- 504 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL-------------------------- 504 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------------------------
Confidence 99999999999999998764 557889999999999999999999999988641
Q ss_pred ccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHccCChhH
Q 043758 666 LDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPN--LYLYNDIFLLLCGVGRMDD 743 (918)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 743 (918)
..+.+..|+ ..+|..++.+|.+.|++++
T Consensus 505 --------------------------------------------------~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 505 --------------------------------------------------VKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp --------------------------------------------------HHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred --------------------------------------------------hhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 011234555 6788888888888888888
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 043758 744 AYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTLLKGL 805 (918)
Q Consensus 744 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 805 (918)
|...|+++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+. .| +...+..+..+|
T Consensus 535 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 535 AIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 888888888754 336678888888888888888888888888874 34 445555555443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-24 Score=228.93 Aligned_cols=221 Identities=14% Similarity=0.042 Sum_probs=98.6
Q ss_pred hhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHH
Q 043758 107 LFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVE 186 (918)
Q Consensus 107 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 186 (918)
+.+.|++++|+..+.++.+.. |.+...+..+...+...|++++|...++...+ ..+.+...|..+..++.+.|++++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~--~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHH
Confidence 344444444444444444332 22333333344444444444444444444443 112233344444444444444444
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 187 AESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDS-YTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
|...|+++.+..+. +..+|..+..++...|++++|+..|+++.+. .|+. ..+..+...+...|++++|.+.|+++.
T Consensus 86 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444444443221 3334444455555555555555555554443 2222 233344444444455555555555544
Q ss_pred hCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 266 DWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKML 335 (918)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (918)
+.. +.+..++..+...|...|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++..
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 432 2234444445555555555555555555544433 2233444445555555555555555554443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-27 Score=252.24 Aligned_cols=186 Identities=15% Similarity=0.142 Sum_probs=134.9
Q ss_pred cHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCC---------hHHHHHHHHHHHhcCCCCChhh
Q 043758 170 PYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRN---------MKMAMRLFFRMLKTGCEPDSYT 240 (918)
Q Consensus 170 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~~~~p~~~~ 240 (918)
.++.++.+|++.|++++|.++|++|.+.|+.||..+||+||.+|.+.+. ++.|.++|++|.+.|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4566666777777777777777777777777777777777776665443 5667777777777777777777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh
Q 043758 241 CNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK 320 (918)
Q Consensus 241 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 320 (918)
|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCC
Q 043758 321 HNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPE 355 (918)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 355 (918)
.|+.++|.++|++|.+.|..|+..||+.++..+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777776665443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-24 Score=226.88 Aligned_cols=381 Identities=13% Similarity=0.090 Sum_probs=289.7
Q ss_pred HHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCC
Q 043758 139 IDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRN 218 (918)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 218 (918)
...+.+.|++++|++.++.+.+. .+.+...+..+...+...|++++|...++...+..+. +..+|..+..+|...|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 45567789999999999888762 2334455666777788889999999999888876443 77889999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 043758 219 MKMAMRLFFRMLKTGCEPD-SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLN 297 (918)
Q Consensus 219 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 297 (918)
+++|+..|+++.+. .|+ ..+|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+
T Consensus 83 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998876 344 4578888888999999999999999988764 4445677778888888899999999998
Q ss_pred HHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCC
Q 043758 298 SKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGID 377 (918)
Q Consensus 298 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 377 (918)
.+.... +.+..+|+.+...+...|++++|...|+++.+. .|+.
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~---------------------------------- 202 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNF---------------------------------- 202 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTC----------------------------------
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc----------------------------------
Confidence 888765 445678888888999999999999998888763 2221
Q ss_pred hhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 043758 378 PLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKC 457 (918)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 457 (918)
..+|..+...+...|++++|+..|++..... +.+..++..+..+
T Consensus 203 -----------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 203 -----------------------------------LDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACV 246 (388)
T ss_dssp -----------------------------------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHH
Confidence 1456677778888888888888888887653 2335566666666
Q ss_pred HHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043758 458 FYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGID 537 (918)
Q Consensus 458 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 537 (918)
+... |++++|...++++.+.++. +..++..+..++.+.|++++|.+.|+++.+.. +
T Consensus 247 ~~~~----------------------g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 302 (388)
T 1w3b_A 247 YYEQ----------------------GLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-P 302 (388)
T ss_dssp HHHT----------------------TCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-T
T ss_pred HHHc----------------------CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 6544 4556666667777665433 56778888888888888888888888888764 5
Q ss_pred CcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043758 538 PDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALI 617 (918)
Q Consensus 538 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 617 (918)
.+..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+...|..+.
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg 380 (388)
T 1w3b_A 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 380 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHH
Confidence 677788888888888888888888888887753 3445677888888888888888888888888753 34566677676
Q ss_pred HHHHHcC
Q 043758 618 NHFLRAG 624 (918)
Q Consensus 618 ~~~~~~g 624 (918)
..+...|
T Consensus 381 ~~~~~~~ 387 (388)
T 1w3b_A 381 NTLKEMQ 387 (388)
T ss_dssp HHHHHTC
T ss_pred HHHHHcc
Confidence 6665554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-27 Score=250.96 Aligned_cols=216 Identities=18% Similarity=0.111 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHhcCCCCch-HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHH
Q 043758 395 QEIELLLRKIVKSDPKLAN-VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVEL 473 (918)
Q Consensus 395 ~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 473 (918)
..++.+.+.+........+ ..++.+|++|++.|++++|+.+|++|.+.|+.||..+|+++|.+|++.+....
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~------- 79 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE------- 79 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS-------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh-------
Confidence 3445555566555544433 46889999999999999999999999999999999999999999988765432
Q ss_pred hhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcC
Q 043758 474 MQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQN 553 (918)
Q Consensus 474 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 553 (918)
..+.+.++.|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.
T Consensus 80 ------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~ 153 (501)
T 4g26_A 80 ------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 153 (501)
T ss_dssp ------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred ------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC
Confidence 23456678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043758 554 RKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRA 623 (918)
Q Consensus 554 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 623 (918)
|+.++|.++|++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 154 g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 154 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999888754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-18 Score=196.21 Aligned_cols=239 Identities=11% Similarity=0.064 Sum_probs=149.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.+..+..-|+.+|-++- +..-.+.++++.|+++.+...-++ .|..|| |..++..+.+. +.+.|.
T Consensus 467 v~~~d~~lAl~iY~~a~---------~~~Kvi~~l~~~gq~~ki~~Y~~~---~~~~pD---y~~ll~~~~~~-~P~~~~ 530 (1630)
T 1xi4_A 467 VKSVDPTLALSVYLRAN---------VPNKVIQCFAETGQVQKIVLYAKK---VGYTPD---WIFLLRNVMRI-SPDQGQ 530 (1630)
T ss_pred HHhcChHHHHHHHHhcC---------CcHHHHHHHHHhCCHHHHHHHHhc---cCCCcc---HHHHHHHHhhc-ChHHHH
Confidence 44445555666655332 233667778888888888877443 455555 56677777644 578888
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCC-----------------------------Ch
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYV-----------------------------DK 203 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----------------------------~~ 203 (918)
++...+.+ . .|.....+.++..+...+.+.++..++-+..+.+-+- +.
T Consensus 531 ~fa~~L~~-~--~~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fth 607 (1630)
T 1xi4_A 531 QFAQMLVQ-D--EEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTH 607 (1630)
T ss_pred HHHHHHhc-C--CCCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCcccc
Confidence 88887776 2 2234556677888888888888888887777654221 12
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhc--CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHH---
Q 043758 204 LMYTSLINGYCSNRNMKMAMRLFFRMLKT--GCE-PDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDL--- 277 (918)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--- 277 (918)
.-+..+...|-++|-++.|++.|..+... -+. .....-..++..+++ =..+.+.++++.|...++.-+.....
T Consensus 608 yd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~-l~~~~s~~~l~~~l~~n~~qnlq~vvqva 686 (1630)
T 1xi4_A 608 YDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGS-LSVEDSLECLRAMLSANIRQNLQICVQVA 686 (1630)
T ss_pred ccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhHhhhhhhhhhHH
Confidence 23455677888899999999988765431 011 111122234444444 46688999999998765444433333
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 043758 278 ----------IMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKK 333 (918)
Q Consensus 278 ----------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (918)
.++..+-+.+.++.-.-.+..+.. ...|..+....|.+.++.|++.+++++.++
T Consensus 687 ~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~--~s~d~~vhfkyi~aa~~~~q~~everi~re 750 (1630)
T 1xi4_A 687 SKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN--FSQDPDVHFKYIQAACKTGQIKEVERICRE 750 (1630)
T ss_pred HHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhcc--ccCChHHHHHHHHHHHHhCCchhhhHHhcc
Confidence 334444444444444333344433 346778888999999999998888877654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-20 Score=207.54 Aligned_cols=460 Identities=11% Similarity=0.007 Sum_probs=261.9
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHH
Q 043758 204 LMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNY 283 (918)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (918)
..+..+...+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|...++++.+.+ +.+..++..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345566666777777777777777777653 566677777777777777777777777776654 44556677777777
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHH
Q 043758 284 CREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHAL 363 (918)
Q Consensus 284 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 363 (918)
...|++++|...|+.+...+ +++......++..+........+.+.+..+...+..|+......-.......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------- 155 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ------- 155 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc-------
Confidence 77777777777777776655 3344444444444444333333333332222211111111110000000000
Q ss_pred HHHHHHHhcCCCCCh-hhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHc---cCChHHHHHHHHHH
Q 043758 364 MLLCEFAKIGCGIDP-LARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCK---GGKYEKAYVCLFQL 439 (918)
Q Consensus 364 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 439 (918)
...+.. ........+...... .....+.+...+......+.. .|++++|+..|+++
T Consensus 156 ---------~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 156 ---------ENLPSVTSMASFFGIFKPELTF-----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCC-----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ---------cCCchhHHHHHHHhhcCHHHHH-----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 000000 000000000000000 000001112334444444443 78888888888877
Q ss_pred HH-----CCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043758 440 VN-----FGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGH 514 (918)
Q Consensus 440 ~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 514 (918)
.+ ....|+.... .+.+..++..+...
T Consensus 216 ~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKL-------------------------------------------------KEKLAISLEHTGIF 246 (514)
T ss_dssp HHHHHHHTTTSTTCHHH-------------------------------------------------HHHHHHHHHHHHHH
T ss_pred HHHhhhhhccCcccccc-------------------------------------------------ChHHHHHHHHHHHH
Confidence 76 3212221100 01134566667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHH
Q 043758 515 LCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLG 594 (918)
Q Consensus 515 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 594 (918)
+...|++++|...|+++.+.. |+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 778888888888888877764 336677777777888888888888888877653 33556677777777778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchh
Q 043758 595 CMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDS 674 (918)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 674 (918)
...++.+.+.. +.+..++..+..++...|++++|...++.+.+.
T Consensus 324 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------------------------- 367 (514)
T 2gw1_A 324 GKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK----------------------------------- 367 (514)
T ss_dssp HHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------------------------
Confidence 88888777653 335567777777777777777777777776531
Q ss_pred hhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 043758 675 GKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKRE 754 (918)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 754 (918)
.+.+...+..+...+...|++++|...++++.+.
T Consensus 368 ----------------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 368 ----------------------------------------------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp ----------------------------------------------STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 0223455666667777777777777777776553
Q ss_pred CCC-Cc----HHhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 043758 755 GLR-PN----QVTFCILINGHIA---AGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGF 826 (918)
Q Consensus 755 ~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 826 (918)
... ++ ...+..+..++.. .|++++|...++++.+.. +.+..++..+..+|...|++++|...+++..+ +
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~ 478 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--L 478 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--h
Confidence 111 11 2256666677777 777777777777776642 22456667777777777777777777777765 3
Q ss_pred CCCHH
Q 043758 827 VPKKA 831 (918)
Q Consensus 827 ~p~~~ 831 (918)
.|+..
T Consensus 479 ~~~~~ 483 (514)
T 2gw1_A 479 ARTME 483 (514)
T ss_dssp CSSHH
T ss_pred ccccH
Confidence 45444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-17 Score=186.94 Aligned_cols=231 Identities=18% Similarity=0.163 Sum_probs=153.4
Q ss_pred CCChHHHHHHHHHHHHhcCC--CCchHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhH
Q 043758 390 TGDLCQEIELLLRKIVKSDP--KLANVAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGA 467 (918)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 467 (918)
..+...++.++++++.-.+. ..+...-+.++.+..+. +..+..++...+.. .....+...+...|.+++|
T Consensus 997 ~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEA 1068 (1630)
T ss_pred hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHH
Confidence 44445666666666653221 01223334444444444 33444444443321 1133455667777888888
Q ss_pred HHHHHHhhcc-----cCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 043758 468 NAIVELMQDT-----EGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVF 542 (918)
Q Consensus 468 ~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 542 (918)
..+|+..... ..+...+++++|.++.++. -+..+|..+..++.+.|++++|++.|.+. .|...
T Consensus 1069 f~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~sa 1136 (1630)
T 1xi4_A 1069 FAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSS 1136 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHH
Confidence 8888776433 1112445666666666544 26788899999999999999999999664 46777
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 043758 543 FTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLR 622 (918)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 622 (918)
|..++.+|.+.|++++|.+.|...++.. +++...+.++.+|++.+++++...+ .+ .++...|..+...|..
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHh
Confidence 8889999999999999999999888764 4444445688889999888854433 22 3466677789999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhh
Q 043758 623 AGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRR 658 (918)
Q Consensus 623 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 658 (918)
.|++++|..+|... ..|..+...+++.
T Consensus 1208 eg~YeeA~~~Y~kA---------~ny~rLA~tLvkL 1234 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNV---------SNFGRLASTLVHL 1234 (1630)
T ss_pred cCCHHHHHHHHHhh---------hHHHHHHHHHHHh
Confidence 99999999999985 3666666666654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-20 Score=208.51 Aligned_cols=437 Identities=9% Similarity=-0.025 Sum_probs=270.0
Q ss_pred HhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc
Q 043758 65 LLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY 144 (918)
Q Consensus 65 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 144 (918)
+...+..+.+.|++++|+..|+.+++.+ |++.+|..++.++...|++++|+..++++.+.+ +.+..++..++.++..
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 3344555688899999999999999877 688899999999999999999999999999876 5567789999999999
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 043758 145 KGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMR 224 (918)
Q Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 224 (918)
.|++++|+..|+.+.+ .+ +++......++..+........+.+.+..+...+..|+...++.................
T Consensus 86 ~g~~~~A~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSL-NG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp TTCHHHHHHHHHHHHH-SS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HhhHHHHHHHHHHHHh-cC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999987 33 344455555555555444444444444333332222222211111111111111111111
Q ss_pred HHHHHHhcCCC--------CC-hhhHHHHHHHHHh---cCChhHHHHHHHHHHh-----CCC--------CccHhhHHHH
Q 043758 225 LFFRMLKTGCE--------PD-SYTCNTLIHGFFK---MGLFDKGWVLYSQMSD-----WGF--------QPNMVTDLIM 279 (918)
Q Consensus 225 ~~~~m~~~~~~--------p~-~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l 279 (918)
+...+...... |+ ...+......+.. .|++++|..+++++.+ ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 11111111101 22 2333333333443 7888888888888776 311 2234566777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccH
Q 043758 280 ISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTEL 359 (918)
Q Consensus 280 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 359 (918)
...+...|++++|...|+.+...+ |+..++..+..++...|++++|...|+++.... |+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~----------------- 302 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD--SN----------------- 302 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TT-----------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cC-----------------
Confidence 777888888888888888877665 336677777778888888888888887776532 11
Q ss_pred HHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHH
Q 043758 360 QHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQL 439 (918)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 439 (918)
+..++..+...+...|++++|+..|+.+
T Consensus 303 ----------------------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 303 ----------------------------------------------------NSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp ----------------------------------------------------CTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred ----------------------------------------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1144566677777788888888888877
Q ss_pred HHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043758 440 VNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEK 519 (918)
Q Consensus 440 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 519 (918)
.+.. +.+...+..+...+. ..|++++|...++++.+..+. +..++..+...+...|
T Consensus 331 ~~~~-~~~~~~~~~l~~~~~----------------------~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 331 KELD-PENIFPYIQLACLAY----------------------RENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKN 386 (514)
T ss_dssp HHTC-SSCSHHHHHHHHHTT----------------------TTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTT
T ss_pred HHhC-hhhHHHHHHHHHHHH----------------------HcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCC
Confidence 7653 223344444444433 345556666666666655332 5566777777777777
Q ss_pred CHHHHHHHHHHHHHCCC-CCc----HHHHHHHHHHHHc---CCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCCh
Q 043758 520 RILEAEDMFKRMLKAGI-DPD----EVFFTTMINGYLQ---NRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMV 591 (918)
Q Consensus 520 ~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 591 (918)
++++|...++++.+... .++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 465 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDI 465 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCH
Confidence 77777777777765320 111 2366667777777 777777777777776653 23445666677777777777
Q ss_pred hHHHHHHHHHHhC
Q 043758 592 DLGCMYLDRMLAD 604 (918)
Q Consensus 592 ~~a~~~~~~~~~~ 604 (918)
++|...|+...+.
T Consensus 466 ~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 466 DEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777665
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-19 Score=198.98 Aligned_cols=201 Identities=13% Similarity=0.010 Sum_probs=113.5
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
+..++..++..+.+.|++++|+..|+++.+.. +.+..++..++.++...|++++|++.|+.+.+ . .+.+...+..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ-L-KMDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-c-CCCcHHHHHHHH
Confidence 34455555555555555555655555555443 33445555555555555555555555555554 1 122344455555
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCCh---hhHHHH------------HHHHhcCCChHHHHHHHHHHHhcCCCCChhh
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDK---LMYTSL------------INGYCSNRNMKMAMRLFFRMLKTGCEPDSYT 240 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 240 (918)
.+|.+.|++++|...|+++.+..+. +. ..+..+ ...+...|++++|+..|+++.+.. +.+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 5555555555555555555554222 22 333333 333666667777777776666542 234456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 241 CNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 241 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
+..+..++...|++++|..+|+++.+.. +.+..++..+...|...|++++|...|+.+...
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666667777766666666543 345566666666666666666666666666554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-19 Score=197.20 Aligned_cols=344 Identities=10% Similarity=0.022 Sum_probs=269.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 043758 490 LDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKEN 569 (918)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 569 (918)
...+....... +.+...+..++..+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|+..|+++.+.
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33444444432 3377889999999999999999999999999864 567889999999999999999999999999987
Q ss_pred CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHH
Q 043758 570 SVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNV---VLYTAL------------INHFLRAGEFEFASRLEN 634 (918)
Q Consensus 570 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~a~~~~~ 634 (918)
+ +.+...+..+..+|...|++++|..+|+.+.+.. +.+. ..+..+ ...+.+.|++++|+..++
T Consensus 90 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 90 K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5 3456788899999999999999999999999863 3334 555555 444889999999999999
Q ss_pred HHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHH
Q 043758 635 LMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVL 714 (918)
Q Consensus 635 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 714 (918)
.+.+... .+..++..+ ...+...|++++|...++
T Consensus 168 ~~~~~~~-~~~~~~~~l---------------------------------------------~~~~~~~g~~~~A~~~~~ 201 (450)
T 2y4t_A 168 KILEVCV-WDAELRELR---------------------------------------------AECFIKEGEPRKAISDLK 201 (450)
T ss_dssp HHHHHCT-TCHHHHHHH---------------------------------------------HHHHHHTTCGGGGHHHHH
T ss_pred HHHHhCC-CChHHHHHH---------------------------------------------HHHHHHCCCHHHHHHHHH
Confidence 9986321 123333333 344555699999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHH-hHHHH------------HHHHHhcCCHHHHHH
Q 043758 715 KVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQV-TFCIL------------INGHIAAGEIDQAIG 781 (918)
Q Consensus 715 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l------------i~~~~~~g~~~~A~~ 781 (918)
.+.+.. +.+..+|..++.+|...|++++|+..|+++... .|+.. .+..+ ..+|...|++++|+.
T Consensus 202 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 278 (450)
T 2y4t_A 202 AASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 278 (450)
T ss_dssp HHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 887653 457889999999999999999999999999875 45433 34333 788999999999999
Q ss_pred HHHHHHhCCCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHH
Q 043758 782 LFNQMNADGCVPD-----KTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEM 856 (918)
Q Consensus 782 ~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 856 (918)
.|+++.+. .|+ ...|..+..++.+.|++++|+..++++.+. .+.+...|..+..+|...|++++|...++++
T Consensus 279 ~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 279 KYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999884 344 457888999999999999999999998863 2346788999999999999999999999999
Q ss_pred HhCCCCCCcccHHHHHHH------------HHhcC-----CHHHHHHHHHH
Q 043758 857 IVHDHVPCLSNCNWLLNI------------LCQEK-----HFHEAQIVLDV 890 (918)
Q Consensus 857 ~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 890 (918)
++.. |.++.++..++.+ |...| +.+++.+.+++
T Consensus 356 l~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 356 QEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9876 7778888888844 44445 56677777776
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-18 Score=195.75 Aligned_cols=433 Identities=11% Similarity=0.027 Sum_probs=284.6
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHH
Q 043758 203 KLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISN 282 (918)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (918)
...|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|.+.++++.+.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456777777888888888888888887763 3355677777888888888888888888887765 4566777778888
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCChhhHHHHHhhCCCC
Q 043758 283 YCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANR------VAPDHLLSFILLKNCPEG 356 (918)
Q Consensus 283 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~ 356 (918)
|...|++++|...|+.+ ... |+ .....+..+...+...+|...++++.... ..|+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~-------------- 163 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS-------------- 163 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCC--------------
T ss_pred HHHcCCHHHHHHHHHHH-hcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch--------------
Confidence 88888888888888633 221 22 22223445555566677777777775431 1111
Q ss_pred ccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHH
Q 043758 357 TELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCL 436 (918)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (918)
...+..+....+.+.+...+
T Consensus 164 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 164 ------------------------------------------------------------NTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp ------------------------------------------------------------HHHHHHHHHTSCHHHHHHTS
T ss_pred ------------------------------------------------------------HhHHHHHHHhcChHHHHHHH
Confidence 12222233344444433332
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHhc-----CChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCH------
Q 043758 437 FQLVNFGYRPLVFTCNTLIKCFYQV-----GFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSV------ 505 (918)
Q Consensus 437 ~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 505 (918)
.... ..+ ..+..+..++... +.+..+ .+++++|..+++++.+..+. +.
T Consensus 184 ~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~~a---------------~~~~~~A~~~~~~~l~~~p~-~~~~~~~~ 242 (537)
T 3fp2_A 184 NTSS----NYD-TAYALLSDALQRLYSATDEGYLVA---------------NDLLTKSTDMYHSLLSANTV-DDPLRENA 242 (537)
T ss_dssp CCCC----SSC-SSHHHHHHHHHHHHTCSHHHHHHH---------------HHHHHHHHHHHHHHHC--CC-CHHHHHHH
T ss_pred hhcc----ccc-cHHHHHHHHHHHHHHhhhhhhHHH---------------HHHHHHHHHHHHHHHHHCCC-cchhhHHH
Confidence 2211 111 1122222222211 111111 23677888888888876443 32
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 043758 506 -AIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISG 584 (918)
Q Consensus 506 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (918)
.++..+...+...|++++|...|+++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHH
Confidence 34666777788889999999999998886 4567778888888888999999999999888764 3456778888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccc
Q 043758 585 LVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKK 664 (918)
Q Consensus 585 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 664 (918)
+...|++++|...++.+.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------------- 373 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK------------------------- 373 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------
T ss_pred HHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------
Confidence 888899999998888888764 335667888888888888888888888877631
Q ss_pred cccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHH
Q 043758 665 WLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDA 744 (918)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 744 (918)
.+.+...+..+...+...|++++|
T Consensus 374 --------------------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 374 --------------------------------------------------------FPTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp --------------------------------------------------------CTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------------------------------------------CCCChHHHHHHHHHHHHhCCHHHH
Confidence 123456777778888888888888
Q ss_pred HHHHHHHHHcCCC-C----cHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 043758 745 YDHFQMMKREGLR-P----NQVTFCILINGHIAA----------GEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAG 809 (918)
Q Consensus 745 ~~~~~~m~~~~~~-p----~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 809 (918)
...|+++.+.... + ....+.....++... |++++|+..|+++.+.. +.+...+..+..+|...|
T Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 8888887664210 0 111233344566666 88888888888888752 235677888888888888
Q ss_pred ChhHHHHHHHHHHh
Q 043758 810 RLSHVFSVFYSMHK 823 (918)
Q Consensus 810 ~~~~A~~~~~~~~~ 823 (918)
++++|...+++..+
T Consensus 477 ~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 477 KIDEAIELFEDSAI 490 (537)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 88889888888876
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-19 Score=200.10 Aligned_cols=440 Identities=11% Similarity=0.045 Sum_probs=309.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHH
Q 043758 238 SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDA 317 (918)
Q Consensus 238 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 317 (918)
...+..+...+...|++++|...|+++.+.. +.+..++..+..+|.+.|++++|.+.|+.+...+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3467778888999999999999999999875 5678899999999999999999999999998876 5677889999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHH
Q 043758 318 LYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEI 397 (918)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 397 (918)
+...|++++|...|+.+ . ..|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~--~~~~~~----------------------------------------------------- 126 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-S--LNGDFD----------------------------------------------------- 126 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-------------------------------------------------------------
T ss_pred HHHcCCHHHHHHHHHHH-h--cCCCCC-----------------------------------------------------
Confidence 99999999999999633 2 222211
Q ss_pred HHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCCcccHHHHHHHHHhcCChhhHHHHHHHhh
Q 043758 398 ELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVNFG--YRPLVFTCNTLIKCFYQVGFLEGANAIVELMQ 475 (918)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 475 (918)
...+..+...+....|+..++.+.... ..+........+..+....+...+..
T Consensus 127 -------------------~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 181 (537)
T 3fp2_A 127 -------------------GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS------ 181 (537)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH------
T ss_pred -------------------hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH------
Confidence 111122223334466777777765431 11111222333333433333322221
Q ss_pred cccCccccCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH--------HhcCCHHHHHHHHHHHHHCCCCCc-------
Q 043758 476 DTEGNCKWGNLDSALDILDQMEVRGPKPSVA-IYDAIIGHL--------CKEKRILEAEDMFKRMLKAGIDPD------- 539 (918)
Q Consensus 476 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~--------~~~~~~~~a~~~~~~~~~~~~~~~------- 539 (918)
.+..... ..+... ....+...+ ...+++++|..+++++.+.. +.+
T Consensus 182 ----------------~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~ 242 (537)
T 3fp2_A 182 ----------------SVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENA 242 (537)
T ss_dssp ----------------TSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHH
T ss_pred ----------------HHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHH
Confidence 1111111 111111 222222221 22357899999999998763 222
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043758 540 EVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINH 619 (918)
Q Consensus 540 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 619 (918)
..++..+...+...|++++|...++++.+. .|+...+..+...+...|++++|..+++.+.+.. +.+..++..+..+
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHH
Confidence 234666677888899999999999999886 4557788888888999999999999999988764 4567888999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHH
Q 043758 620 FLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSA 699 (918)
Q Consensus 620 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (918)
+...|++++|+..++++.+..
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~----------------------------------------------------------- 340 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLN----------------------------------------------------------- 340 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred HHhcCCHHHHHHHHHHHHHhC-----------------------------------------------------------
Confidence 999999999999988886410
Q ss_pred HHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHH
Q 043758 700 VFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQA 779 (918)
Q Consensus 700 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 779 (918)
+.+...|..+..+|...|++++|...++++.+.. +.+...+..+..++...|++++|
T Consensus 341 ----------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 341 ----------------------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp ----------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred ----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 2245678888899999999999999999998863 33455788889999999999999
Q ss_pred HHHHHHHHhCC-----CCCCHHHHHHHHHHHHHc----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 043758 780 IGLFNQMNADG-----CVPDKTVYNTLLKGLCQA----------GRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANC 844 (918)
Q Consensus 780 ~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 844 (918)
...|+++.+.. .......+..+..++... |++++|...++++.+. .+.+...+..+..++.+.|
T Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhc
Confidence 99999987751 111223344556677777 9999999999999864 2346678888999999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCcc
Q 043758 845 LSIPAFNMFKEMIVHDHVPCLS 866 (918)
Q Consensus 845 ~~~~A~~~~~~~~~~~~~~~~~ 866 (918)
++++|...++++.... |.+..
T Consensus 477 ~~~~A~~~~~~al~~~-~~~~~ 497 (537)
T 3fp2_A 477 KIDEAIELFEDSAILA-RTMDE 497 (537)
T ss_dssp CHHHHHHHHHHHHHHC---CHH
T ss_pred cHHHHHHHHHHHHHhC-CCcHH
Confidence 9999999999998875 44433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.1e-17 Score=171.01 Aligned_cols=314 Identities=12% Similarity=0.076 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 043758 505 VAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISG 584 (918)
Q Consensus 505 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (918)
+..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4455666666677777777777777766653 3445666666666667777777777777666542 2244556666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhccc
Q 043758 585 LVKKGMVDLGCMYLDRMLADGFV---PNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITG 661 (918)
Q Consensus 585 ~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 661 (918)
+...|++++|...++.+.+.. + .+...+..+...+. +.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-------~~------------------------------- 121 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-------MQ------------------------------- 121 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-------HH-------------------------------
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-------HH-------------------------------
Confidence 666666666666666666542 1 12333333311000 00
Q ss_pred ccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 043758 662 RKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRM 741 (918)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 741 (918)
........+...|+++.|...++.+.+.. +.+...+..+..++...|++
T Consensus 122 ------------------------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3ieg_A 122 ------------------------------RLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEP 170 (359)
T ss_dssp ------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred ------------------------------HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCH
Confidence 00111223333455555555555554332 34566777777777778888
Q ss_pred hHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHHcC
Q 043758 742 DDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYN------------TLLKGLCQAG 809 (918)
Q Consensus 742 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~------------~l~~~~~~~g 809 (918)
++|...++++.+.. +.+...+..+...+...|++++|...|+++.+... .+...+. .+...+...|
T Consensus 171 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (359)
T 3ieg_A 171 RKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDG 248 (359)
T ss_dssp HHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888777642 33455677777777778888888888877776421 1223222 2255677788
Q ss_pred ChhHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 043758 810 RLSHVFSVFYSMHKRGFVPKKA-----TYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEA 884 (918)
Q Consensus 810 ~~~~A~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 884 (918)
++++|...++++.+. .|+.. .+..+..++.+.|++++|...++++.... |.++..+..++.+|...|++++|
T Consensus 249 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 325 (359)
T 3ieg_A 249 RYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEA 325 (359)
T ss_dssp CHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888877753 34322 23445667778888888888888887765 66777888888888888888888
Q ss_pred HHHHHHHHhCC
Q 043758 885 QIVLDVMHKRG 895 (918)
Q Consensus 885 ~~~~~~~~~~~ 895 (918)
.+.++++.+..
T Consensus 326 ~~~~~~a~~~~ 336 (359)
T 3ieg_A 326 IQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhcC
Confidence 88888887765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-16 Score=168.87 Aligned_cols=236 Identities=16% Similarity=0.097 Sum_probs=122.4
Q ss_pred hhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChh
Q 043758 70 NDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLD 149 (918)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 149 (918)
..+...|++++|...|+.+++.++. ++.++..++..+...|++++|+..|+++.+.. +.+...+..+...+...|+++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 88 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLD 88 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChH
Confidence 3344555555555555555444322 34444455555555555555555555544443 223344444445555555555
Q ss_pred HHHHHHHHHHhcCCCCC----CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHH
Q 043758 150 EVLEVVNIMRKKKGLVP----ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRL 225 (918)
Q Consensus 150 ~A~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 225 (918)
+|.+.|+.+.+ ..| +...+..+...+ . ...+..+...+...|++++|+..
T Consensus 89 ~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~~A~~~ 142 (359)
T 3ieg_A 89 EAEDDFKKVLK---SNPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYTAAITF 142 (359)
T ss_dssp HHHHHHHHHHT---SCCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHh---cCCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHHHHHHH
Confidence 55555555443 122 111111111000 0 01122234566677777777777
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 043758 226 FFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLA 305 (918)
Q Consensus 226 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 305 (918)
|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+...+.. +
T Consensus 143 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~ 219 (359)
T 3ieg_A 143 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-Q 219 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 77776653 2345566666667777777777777777776654 4456666677777777777777777777766543 2
Q ss_pred CCcchHH------------HHHHHHHhcCChhHHHHHHHHHHh
Q 043758 306 PSVHCYT------------VLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 306 ~~~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
.+...+. .+...+...|++++|...|+++..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2222222 123445555555555555555544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-16 Score=166.31 Aligned_cols=294 Identities=10% Similarity=-0.076 Sum_probs=218.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHH
Q 043758 502 KPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTAL 581 (918)
Q Consensus 502 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 581 (918)
+.+...+..++..+...|++++|.++|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3455667777888888899999999988888764 3455566667777888888888888888888753 3456777778
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcc
Q 043758 582 ISGLVKKG-MVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRIT 660 (918)
Q Consensus 582 ~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 660 (918)
...+...| ++++|...|+.+.+.. +.+...|..+..++...|++++|+..++++.+..
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------------- 155 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-------------------- 155 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--------------------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------------------
Confidence 88888888 8888888888888764 3456678888888888888888888888776421
Q ss_pred cccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 043758 661 GRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGR 740 (918)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 740 (918)
+.+...+..+...|...|+
T Consensus 156 -------------------------------------------------------------~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 156 -------------------------------------------------------------KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp -------------------------------------------------------------TTCSHHHHHHHHHHHHTTC
T ss_pred -------------------------------------------------------------cccHHHHHHHHHHHHHHhh
Confidence 2234556667778888888
Q ss_pred hhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCChh
Q 043758 741 MDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADG--------CVPDKTVYNTLLKGLCQAGRLS 812 (918)
Q Consensus 741 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~ 812 (918)
+++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. .+.....+..+..+|...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888887742 3345577778888888888888888888877641 1223567888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHH-HhcCCHH
Q 043758 813 HVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNIL-CQEKHFH 882 (918)
Q Consensus 813 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 882 (918)
+|...+++..+.. +.+...+..+..++.+.|++++|...++++.+.. |.++..+..++.++ ...|+.+
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 8888888887632 3355677778888888888888888888888776 67778888888887 4555543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-14 Score=157.93 Aligned_cols=233 Identities=15% Similarity=0.135 Sum_probs=139.2
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHhhc----hhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc----CCChhHHHH
Q 043758 82 LRHFDRLISKNIVPIKLACVSILRGLFA----EEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY----KGFLDEVLE 153 (918)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 153 (918)
...+....+.+ ++.++..+...|.. .+++++|+.+|++..+.+ +...+..+...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 33444444443 45566666666665 667777777777766654 44566666666666 667777777
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHhc----cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCChHHHHHH
Q 043758 154 VVNIMRKKKGLVPALHPYKSLFYALCK----NIRTVEAESFAREMESQGFYVDKLMYTSLINGYCS----NRNMKMAMRL 225 (918)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 225 (918)
+|++..+ .+ +...+..+...|.. .+++++|...|++..+.+ ++..+..|...|.. .+++++|+..
T Consensus 101 ~~~~a~~-~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 101 WYKKAAL-KG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 7777665 22 34455555555555 566677777777666653 45566666666655 5667777777
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHh----cCCHHHHHHHHH
Q 043758 226 FFRMLKTGCEPDSYTCNTLIHGFFK----MGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCR----EGEVDAALMLLN 297 (918)
Q Consensus 226 ~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 297 (918)
|++..+.| +...+..+...+.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|..+|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 77666543 44555556555555 566677777776666644 34455555555554 566666666666
Q ss_pred HHhhCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHh
Q 043758 298 SKVSSNLAPSVHCYTVLIDALYK----HNRLMEVDELYKKMLA 336 (918)
Q Consensus 298 ~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~ 336 (918)
...+.+ +...+..+...|.. .+++++|...|++..+
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE 287 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Confidence 666543 33444555555555 5556666666655543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-16 Score=161.62 Aligned_cols=282 Identities=10% Similarity=-0.066 Sum_probs=232.1
Q ss_pred hHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHH
Q 043758 63 SALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGL 142 (918)
Q Consensus 63 ~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (918)
+........+...|++++|..+|+.+.+.++. +..++..++.++...|++++|+..++++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 33334444457778888888889998887654 55677788899999999999999999999876 56778999999999
Q ss_pred HcCC-ChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHH
Q 043758 143 CYKG-FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKM 221 (918)
Q Consensus 143 ~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 221 (918)
...| ++++|++.|+.+.+ . .+.+...+..+..++...|++++|...|++..+..+. +...+..+...|...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATT-L-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHT-T-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 9999 99999999999986 2 2445677889999999999999999999999987544 66778889999999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--------CCccHhhHHHHHHHHHhcCCHHHHH
Q 043758 222 AMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWG--------FQPNMVTDLIMISNYCREGEVDAAL 293 (918)
Q Consensus 222 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~ 293 (918)
|...|++..+.. +.+...+..+...+...|++++|...++++.+.. .+.+..++..+...|...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999864 3456788999999999999999999999987642 1334578889999999999999999
Q ss_pred HHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHhhC
Q 043758 294 MLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDH-LLSFILLKNC 353 (918)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~ 353 (918)
..|+...+.. +.+..+|..+..++...|++++|...|++..+. .|+. ..+..+...+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 9999998765 457888999999999999999999999998764 4443 3343333333
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=5e-14 Score=154.84 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=45.6
Q ss_pred HHHHHHHHhCCCCccHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh----cCChhHHHH
Q 043758 258 WVLYSQMSDWGFQPNMVTDLIMISNYCR----EGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK----HNRLMEVDE 329 (918)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~ 329 (918)
...+....+.| +...+..+...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|..
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44444444433 45556666666666 677777777777766643 44566666666666 667777777
Q ss_pred HHHHHHhC
Q 043758 330 LYKKMLAN 337 (918)
Q Consensus 330 ~~~~~~~~ 337 (918)
.|++..+.
T Consensus 101 ~~~~a~~~ 108 (490)
T 2xm6_A 101 WYKKAALK 108 (490)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 77666543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-16 Score=166.25 Aligned_cols=257 Identities=11% Similarity=-0.020 Sum_probs=211.0
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
+..+...|++++|...|+.+++.++. +..++..++.++...|++++|+..|+++.+.. +.+..++..++..+...|++
T Consensus 71 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 148 (368)
T 1fch_A 71 GLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 148 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH
Confidence 44457788888888889999887754 67789999999999999999999999999876 56778999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCcccHH----------------HHHHHHhccCchHHHHHHHHHHHhCCCCC-ChhhHHHHHH
Q 043758 149 DEVLEVVNIMRKKKGLVPALHPYK----------------SLFYALCKNIRTVEAESFAREMESQGFYV-DKLMYTSLIN 211 (918)
Q Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~----------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~ 211 (918)
++|++.++.+.+.. +.+...+. .+...+ ..|++++|...|+++.+..+.. +..++..+..
T Consensus 149 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 149 RQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 99999999998722 22222221 233334 8899999999999998864432 4778999999
Q ss_pred HHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHH
Q 043758 212 GYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDA 291 (918)
Q Consensus 212 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 291 (918)
.|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998763 3356788999999999999999999999998865 5567889999999999999999
Q ss_pred HHHHHHHHhhCCCCCC-----------cchHHHHHHHHHhcCChhHHHHHHHH
Q 043758 292 ALMLLNSKVSSNLAPS-----------VHCYTVLIDALYKHNRLMEVDELYKK 333 (918)
Q Consensus 292 A~~~~~~~~~~~~~~~-----------~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (918)
|...|+.+.... +.+ ..+|..+..++...|++++|..++++
T Consensus 304 A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 304 AVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 999999887643 112 57899999999999999999988764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-14 Score=157.47 Aligned_cols=122 Identities=12% Similarity=0.059 Sum_probs=87.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHH-HcCCChhHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGL-CYKGFLDEV 151 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A 151 (918)
...|+++.|..+|+++++..|. +...|...+..+.+.|++++|..+|++++... |+...|...+... ...|+.+.|
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTH
T ss_pred HHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhH
Confidence 4567888888889998887644 67788888988888999999999999988764 4666676666433 346777776
Q ss_pred HH----HHHHHHhcCCCCCC-cccHHHHHHHHhc---------cCchHHHHHHHHHHHhC
Q 043758 152 LE----VVNIMRKKKGLVPA-LHPYKSLFYALCK---------NIRTVEAESFAREMESQ 197 (918)
Q Consensus 152 ~~----~~~~~~~~~~~~~~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~ 197 (918)
.+ +|+......|..|+ ...|...+....+ .|+++.|..+|++..+.
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~ 159 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 159 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence 65 77776653454443 4556666655443 67888888888888873
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-14 Score=158.51 Aligned_cols=141 Identities=11% Similarity=0.030 Sum_probs=108.5
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCC
Q 043758 85 FDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGL 164 (918)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (918)
|++.++.+|. +..+|..++. +.+.|++++|..+|+++++.. |.+...|..++..+.+.|++++|.++|+++.+ .
T Consensus 2 le~al~~~P~-~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~---~ 75 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM---K 75 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---T
T ss_pred hhhHhhhCCC-CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---c
Confidence 5566666654 7789999998 477899999999999999875 66778899999999999999999999999987 3
Q ss_pred CCCcccHHHHHHHH-hccCchHHHHH----HHHHHHhC-CCCC-ChhhHHHHHHHHhc---------CCChHHHHHHHHH
Q 043758 165 VPALHPYKSLFYAL-CKNIRTVEAES----FAREMESQ-GFYV-DKLMYTSLINGYCS---------NRNMKMAMRLFFR 228 (918)
Q Consensus 165 ~~~~~~~~~ll~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~ 228 (918)
.|+...|..++... ...|++++|.+ +|+..... |..| +...|...+..... .|+++.|..+|++
T Consensus 76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 46777776666433 34567766654 77776553 4333 45678887776654 6889999999999
Q ss_pred HHh
Q 043758 229 MLK 231 (918)
Q Consensus 229 m~~ 231 (918)
..+
T Consensus 156 al~ 158 (530)
T 2ooe_A 156 GCV 158 (530)
T ss_dssp HTT
T ss_pred HHh
Confidence 987
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-16 Score=159.31 Aligned_cols=224 Identities=16% Similarity=0.117 Sum_probs=95.0
Q ss_pred hHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHH
Q 043758 72 FVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEV 151 (918)
Q Consensus 72 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 151 (918)
+.+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|
T Consensus 13 l~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHH
Confidence 356788899999999883 3349999999999999999999999653 4777999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 043758 152 LEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (918)
++.++..++ ..+++.+.+.++.+|.+.|++++++++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 81 i~yl~~ark---~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 81 VKYLQMARK---KARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHH---hCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 998888876 24557888999999999999999998885 257789999999999999999999999976
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchH
Q 043758 232 TGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCY 311 (918)
Q Consensus 232 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 311 (918)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhH
Confidence 47999999999999999999999988 278999999999999999999966655433 233334
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 312 TVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 312 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
..++..|.+.|++++|..+++..+..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 56889999999999999999998754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=8e-15 Score=161.13 Aligned_cols=394 Identities=12% Similarity=0.025 Sum_probs=241.0
Q ss_pred CCchHhHHHHHHHHHccCChHHHHHHHHHHHHC-----C--CCC-CcccHHHHHHHHHhcCChhhHHHHHHHhhcccCcc
Q 043758 410 KLANVAFTIYISALCKGGKYEKAYVCLFQLVNF-----G--YRP-LVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNC 481 (918)
Q Consensus 410 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~--~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 481 (918)
......|+.+...+...|++++|+..|++..+. + ..| ...+|..+..++...|++++|...++.+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka------- 120 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV------- 120 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHH-------
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHH-------
Confidence 334578999999999999999999999887642 1 122 3456777888888887777666654432
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH---HHcCCCh
Q 043758 482 KWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKE--KRILEAEDMFKRMLKAGIDPDEVFFTTMING---YLQNRKP 556 (918)
Q Consensus 482 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~ 556 (918)
..+..............++..+..++.+. +++++|++.|++..+.. +.++..+..+..+ +...++.
T Consensus 121 --------~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~ 191 (472)
T 4g1t_A 121 --------KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPS 191 (472)
T ss_dssp --------HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCC
T ss_pred --------HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHH
Confidence 22332222111122456666666666654 46999999999999864 3345555555444 4457888
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043758 557 IEACQLFEKMKENSVQPGSYPYTALISGLVK----KGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRL 632 (918)
Q Consensus 557 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 632 (918)
++|++.+++..+.+ +.+...+..+...+.. .|++++|.+++++..... +.+..++..+...|.+.|++++|+..
T Consensus 192 ~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~ 269 (472)
T 4g1t_A 192 QNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIEL 269 (472)
T ss_dssp CCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHH
Confidence 89999999988764 3344555555555444 567889999999988764 56778899999999999999999999
Q ss_pred HHHHHHCCCCcc-HHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHH
Q 043758 633 ENLMVTNQIEFD-LIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQK 711 (918)
Q Consensus 633 ~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 711 (918)
+++..+. .|+ ..++..+-..|.....
T Consensus 270 ~~~al~~--~p~~~~~~~~lg~~y~~~~~--------------------------------------------------- 296 (472)
T 4g1t_A 270 LKKALEY--IPNNAYLHCQIGCCYRAKVF--------------------------------------------------- 296 (472)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHHH---------------------------------------------------
T ss_pred HHHHHHh--CCChHHHHHHHHHHHHHHHH---------------------------------------------------
Confidence 9999863 343 2233333322221100
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043758 712 IVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGC 791 (918)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 791 (918)
. .... ............+..+.|...+++..+.. +.+...+..+...|...|++++|+..|+++++...
T Consensus 297 --~-~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 297 --Q-VMNL-------RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp --H-HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred --H-hhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 0 0000 00000001111233577888888877642 22344677788888899999999999998887533
Q ss_pred CCCH--HHHHHHHH-HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccH
Q 043758 792 VPDK--TVYNTLLK-GLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNC 868 (918)
Q Consensus 792 ~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 868 (918)
.|.. ..+..+.. .+...|++++|+..+++..+ +.|+.......+ ..+..++++.+..+ |.++.+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~~---------~~l~~~~~~~l~~~-p~~~~~~ 433 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKMK---------DKLQKIAKMRLSKN-GADSEAL 433 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHHH---------HHHHHHHHHHHHHC-C-CTTHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHH---------HHHHHHHHHHHHhC-CCCHHHH
Confidence 3322 12233332 23467889999999988876 556554333332 33455666666666 8889999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043758 869 NWLLNILCQEKHFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 869 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 897 (918)
..|+.+|...|++++|.+.+++.++.|..
T Consensus 434 ~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999987744
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-16 Score=159.99 Aligned_cols=283 Identities=13% Similarity=0.058 Sum_probs=119.8
Q ss_pred hccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 043758 179 CKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGW 258 (918)
Q Consensus 179 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 258 (918)
-+.|++++|.++++++. ++.+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|.
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 36678899999998883 335899999999999999999999965 256678888899999999999999
Q ss_pred HHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 259 VLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANR 338 (918)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (918)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988777664 4557788889999999999999888774 367779999999999999999999999866
Q ss_pred CCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHH
Q 043758 339 VAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTI 418 (918)
Q Consensus 339 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 418 (918)
..|..
T Consensus 149 ---------------------------------------------------------------------------~n~~~ 153 (449)
T 1b89_A 149 ---------------------------------------------------------------------------SNFGR 153 (449)
T ss_dssp ---------------------------------------------------------------------------TCHHH
T ss_pred ---------------------------------------------------------------------------hhHHH
Confidence 22677
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHH
Q 043758 419 YISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEV 498 (918)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 498 (918)
++.++.+.|++++|++.++.+ .++.+|..++.+|...|+++.|... ...
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~----------------------~l~--- 202 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC----------------------GLH--- 202 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHT----------------------TTT---
T ss_pred HHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHH----------------------HHH---
Confidence 888888888888888888877 2567888888888877766665332 111
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh-CCCCC----
Q 043758 499 RGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKE-NSVQP---- 573 (918)
Q Consensus 499 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~---- 573 (918)
+...+.-...++..|.+.|++++|..+++...... +.....|+-+...|++- ++++..+-++.... .+++|
T Consensus 203 --L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~ 278 (449)
T 1b89_A 203 --IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRA 278 (449)
T ss_dssp --TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHH
T ss_pred --HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHH
Confidence 11233334467788888888999888888887654 55677777777777765 34444444333322 23333
Q ss_pred --CchhHHHHHHHHHhcCChhHHHH
Q 043758 574 --GSYPYTALISGLVKKGMVDLGCM 596 (918)
Q Consensus 574 --~~~~~~~l~~~~~~~g~~~~a~~ 596 (918)
+...|..+...|...++++.|..
T Consensus 279 ~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 279 AEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHH
Confidence 45678888888888888888865
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-16 Score=165.52 Aligned_cols=258 Identities=10% Similarity=-0.042 Sum_probs=199.4
Q ss_pred HhcCChHHHHH-HHHHHHhCCCC---CChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 73 VALGNIEDALR-HFDRLISKNIV---PIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 73 ~~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
...|++++|.. .|+......+. .+...+..+...+...|++++|+..|+++.+.. +.+..++..++..+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34466777776 77766554322 235578889999999999999999999999876 56778899999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHH---------------HHHHH
Q 043758 149 DEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTS---------------LINGY 213 (918)
Q Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------li~~~ 213 (918)
++|++.|+.+.+ . .+.+...+..+..++...|++++|...|+++.+..+. +...+.. .+..+
T Consensus 115 ~~A~~~~~~al~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 115 LLAISALRRCLE-L-KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999987 2 2446778888899999999999999999999987544 3333321 23344
Q ss_pred hcCCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHH
Q 043758 214 CSNRNMKMAMRLFFRMLKTGCEP-DSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAA 292 (918)
Q Consensus 214 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 292 (918)
...|++++|+..|+++.+..... +..++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999998763211 46788888889999999999999999988764 55677888999999999999999
Q ss_pred HHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 293 LMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
...|+.+.... +.+..++..+..++...|++++|...|+++..
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999988765 45677888899999999999999999988865
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-16 Score=163.02 Aligned_cols=258 Identities=11% Similarity=-0.047 Sum_probs=192.1
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
+..+.+.|++++|...|+.+++.++. +..+|..++.++...|++++|+..|+++.+.. +.+..++..++..+...|++
T Consensus 72 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 149 (365)
T 4eqf_A 72 GLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQ 149 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccH
Confidence 44457778888888888888877644 67788888888888899999999998888775 55677888888888889999
Q ss_pred hHHHHHHHHHHhcCCCCCC-c----------ccHHHHHHHHhccCchHHHHHHHHHHHhCCCC-CChhhHHHHHHHHhcC
Q 043758 149 DEVLEVVNIMRKKKGLVPA-L----------HPYKSLFYALCKNIRTVEAESFAREMESQGFY-VDKLMYTSLINGYCSN 216 (918)
Q Consensus 149 ~~A~~~~~~~~~~~~~~~~-~----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 216 (918)
++|++.|+++.+. .|+ . ..+..+...+...|++++|...|+++.+..+. ++..+|..+...|...
T Consensus 150 ~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 150 QDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp HHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 9999988888762 222 1 22234467788888888999888888876433 1577888888888888
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHH
Q 043758 217 RNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLL 296 (918)
Q Consensus 217 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 296 (918)
|++++|+..|+++.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+..++..+..+|...|++++|...|
T Consensus 227 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999888888763 3356688888888888889999988888888764 445778888888888889988888888
Q ss_pred HHHhhCCCC-----------CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 043758 297 NSKVSSNLA-----------PSVHCYTVLIDALYKHNRLMEVDELYKK 333 (918)
Q Consensus 297 ~~~~~~~~~-----------~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (918)
+.+.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 305 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 887654200 1356788888888888888877776543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-15 Score=155.59 Aligned_cols=256 Identities=13% Similarity=-0.037 Sum_probs=210.9
Q ss_pred hHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHH
Q 043758 72 FVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEV 151 (918)
Q Consensus 72 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 151 (918)
+...|++++|...|+++.+..+. +..++..++.++...|++++|+..|+++.+.. +.+..++..+...+...|++++|
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A 108 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAA 108 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 36777888888888888877654 67788899999999999999999999999875 55778899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcccHHHH--------------HH-HHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 043758 152 LEVVNIMRKKKGLVPALHPYKSL--------------FY-ALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSN 216 (918)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 216 (918)
++.++.+.+. .+.+...+..+ .. .+...|++++|...++++.+..+. +...+..+...|...
T Consensus 109 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~ 185 (327)
T 3cv0_A 109 LASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLS 185 (327)
T ss_dssp HHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHh
Confidence 9999999872 22233333333 22 377889999999999999887544 788899999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHH
Q 043758 217 RNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLL 296 (918)
Q Consensus 217 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 296 (918)
|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|.+.|
T Consensus 186 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 186 NNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999998763 3456788999999999999999999999998865 556788999999999999999999999
Q ss_pred HHHhhCCCCC-----------CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 043758 297 NSKVSSNLAP-----------SVHCYTVLIDALYKHNRLMEVDELYKKM 334 (918)
Q Consensus 297 ~~~~~~~~~~-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 334 (918)
+.+....... +..+|..+..++...|++++|..++++.
T Consensus 264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 264 VRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9887754111 4678889999999999999999988654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-15 Score=151.14 Aligned_cols=250 Identities=9% Similarity=0.020 Sum_probs=203.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
...|+++.|+..++.....++.+.......+.++|...|++++|+..++. . -+|+..++..+...+...++.++|+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 57889999999888776554332234556788999999999999987654 2 3667788899999999999999999
Q ss_pred HHHHHHHhcCCCCC-CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 043758 153 EVVNIMRKKKGLVP-ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 153 ~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (918)
+.++.+.. .+..| +...+..+..++.+.|++++|...+++ +.+...+..++..|.+.|++++|...|+++.+
T Consensus 86 ~~l~~ll~-~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 86 AELDREMS-RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHH-SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999987 44444 455667777889999999999999987 34788999999999999999999999999998
Q ss_pred cCCCCChhhH---HHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCc
Q 043758 232 TGCEPDSYTC---NTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSV 308 (918)
Q Consensus 232 ~~~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 308 (918)
. .|+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++.... +.+.
T Consensus 159 ~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~ 234 (291)
T 3mkr_A 159 Q--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHP 234 (291)
T ss_dssp H--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred h--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 7 3554321 122334445689999999999999874 6788899999999999999999999999988876 5677
Q ss_pred chHHHHHHHHHhcCChhH-HHHHHHHHHhC
Q 043758 309 HCYTVLIDALYKHNRLME-VDELYKKMLAN 337 (918)
Q Consensus 309 ~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~ 337 (918)
.++..++..+...|+.++ +.++++++.+.
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 889999999999999876 57888888763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-14 Score=155.84 Aligned_cols=373 Identities=11% Similarity=-0.039 Sum_probs=234.3
Q ss_pred CcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHhhchhcHHHHHHHHHH
Q 043758 44 DSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVP-IKLACVSILRGLFAEEKFLEAFDYFIK 122 (918)
Q Consensus 44 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 122 (918)
....|+.+..++...|++++|+..| +.|++++.........| ...+|+.+..+|...|++++|+..+++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~----------~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~k 119 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECL----------RKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDK 119 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHH----------HHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHH----------HHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3456777777887777777777775 44555555443322223 456899999999999999999999998
Q ss_pred HhhcC-------CCCcchhHHHHHHHHHc--CCChhHHHHHHHHHHhcCCCCCC-cccHHHHHHH---HhccCchHHHHH
Q 043758 123 ICNAG-------VDLNCWSYNVLIDGLCY--KGFLDEVLEVVNIMRKKKGLVPA-LHPYKSLFYA---LCKNIRTVEAES 189 (918)
Q Consensus 123 ~~~~~-------~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~ll~~---~~~~g~~~~a~~ 189 (918)
+.+.. ......++.....++.. .+++++|++.|++..+ ..|+ ...+..+..+ +...++.++|..
T Consensus 120 a~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~---~~p~~~~~~~~~~~~~~~l~~~~~~~~al~ 196 (472)
T 4g1t_A 120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE---KKPKNPEFTSGLAIASYRLDNWPPSQNAID 196 (472)
T ss_dssp HHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHSCCCCCTHH
T ss_pred HHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 76421 01123456666655554 4578999999999987 3344 3444444444 344577788898
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHh----cCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 190 FAREMESQGFYVDKLMYTSLINGYC----SNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
.+++..+..+. +...+..+...+. ..|++++|...+++..... +.+...+..+...+...|++++|...+++..
T Consensus 197 ~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 197 PLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp HHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 99888876443 5666666654444 3567889999999988763 3455678888999999999999999999998
Q ss_pred hCCCCccHhhHHHHHHHHHhc-------------------CCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhH
Q 043758 266 DWGFQPNMVTDLIMISNYCRE-------------------GEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLME 326 (918)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 326 (918)
+.. +.+..++..+...|... +..+.|...|+.....+ +.+..++..+...+...|++++
T Consensus 275 ~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 275 EYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHH
T ss_pred HhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHH
Confidence 874 44566777666665432 23566777777776655 4567778888888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHHHHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHh
Q 043758 327 VDELYKKMLANRVAPDHLLSFILLKNCPEGTELQHALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVK 406 (918)
Q Consensus 327 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 406 (918)
|++.|++.......+....
T Consensus 353 A~~~~~kaL~~~~~~~~~~------------------------------------------------------------- 371 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQ------------------------------------------------------------- 371 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHH-------------------------------------------------------------
T ss_pred HHHHHHHHHhcCCCChHHH-------------------------------------------------------------
Confidence 8888888876433221110
Q ss_pred cCCCCchHhHHHHH-HHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCC
Q 043758 407 SDPKLANVAFTIYI-SALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGN 485 (918)
Q Consensus 407 ~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 485 (918)
..+..+. -.....|++++|+..|.+..+. .|+.......
T Consensus 372 -------~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~------------------------------- 411 (472)
T 4g1t_A 372 -------LLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM------------------------------- 411 (472)
T ss_dssp -------HHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH-------------------------------
T ss_pred -------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH-------------------------------
Confidence 0111111 1234678888888888887764 3443222111
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043758 486 LDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAG 535 (918)
Q Consensus 486 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 535 (918)
...+..+++......+ .+..+|..+..+|...|++++|++.|++..+.+
T Consensus 412 ~~~l~~~~~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKNG-ADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1223344445544433 366777778888888888888888888877653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=160.58 Aligned_cols=265 Identities=7% Similarity=-0.096 Sum_probs=212.3
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
+...|..++..+.+.|++++|+..|+++.... +.+..++..++..+...|++++|++.|+++.+. .+.+...+..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 45578899999999999999999999999876 567889999999999999999999999999872 244577889999
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCChhh----------HHHHHHHHhcCCChHHHHHHHHHHHhcCCC-CChhhHHHH
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDKLM----------YTSLINGYCSNRNMKMAMRLFFRMLKTGCE-PDSYTCNTL 244 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l 244 (918)
.+|...|++++|...|+++.+..+. +... +..+...|...|++++|+..|+++.+.... ++..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999999886322 2222 334588899999999999999999987422 157789999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCh
Q 043758 245 IHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRL 324 (918)
Q Consensus 245 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 324 (918)
...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|+.+.+.. +.+..+|..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999998875 5578899999999999999999999999998875 45678899999999999999
Q ss_pred hHHHHHHHHHHhCCCC---C--------ChhhHHHHHhhCCCCccHHHHHHHH
Q 043758 325 MEVDELYKKMLANRVA---P--------DHLLSFILLKNCPEGTELQHALMLL 366 (918)
Q Consensus 325 ~~a~~~~~~~~~~~~~---~--------~~~~~~~ll~~~~~~~~~~~a~~~~ 366 (918)
++|...|+++.+.... + +...+..+..++...|..+.+....
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999998764211 1 2345556666666666666555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.9e-15 Score=153.29 Aligned_cols=266 Identities=8% Similarity=-0.078 Sum_probs=219.7
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
+...+..++..+...|++++|+..|+++.+.. +.+..++..++..+...|++++|.+.++.+.+. .+.+...+..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHH
Confidence 45577788899999999999999999999876 557788999999999999999999999999872 344567888899
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCChhhHHHH--------------HH-HHhcCCChHHHHHHHHHHHhcCCCCChhh
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDKLMYTSL--------------IN-GYCSNRNMKMAMRLFFRMLKTGCEPDSYT 240 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 240 (918)
.++...|++++|...++++.+..+. +...+..+ .. .+...|++++|...++++.+.. +.+...
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 9999999999999999999987543 44444444 33 4778899999999999998864 336678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh
Q 043758 241 CNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYK 320 (918)
Q Consensus 241 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 320 (918)
+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+..+|..+..++..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 8999999999999999999999998875 5567889999999999999999999999988765 4567889999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCC-----------ChhhHHHHHhhCCCCccHHHHHHHHHH
Q 043758 321 HNRLMEVDELYKKMLANRVAP-----------DHLLSFILLKNCPEGTELQHALMLLCE 368 (918)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~~ 368 (918)
.|++++|...|+++....... +...+..+...+...|+.+.|...+..
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999988753321 355667777788888888888776653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-14 Score=146.23 Aligned_cols=169 Identities=11% Similarity=0.084 Sum_probs=121.6
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhH---HHHHHHHHhcCCHHHHH
Q 043758 704 GKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTF---CILINGHIAAGEIDQAI 780 (918)
Q Consensus 704 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~A~ 780 (918)
|++++|.+.+++ +.+...+..++..|.+.|++++|...|+++.+. .|+.... ..++..+...|++++|.
T Consensus 115 g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 115 QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 444445544442 346677888888999999999999999999885 4654321 22333344568899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhh-HHHHHHHHHh
Q 043758 781 GLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIP-AFNMFKEMIV 858 (918)
Q Consensus 781 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~ 858 (918)
.+|+++.+. .+.+...|+.+..++...|++++|...+++..+. .| +..++..++.++...|+..+ +..+++++.+
T Consensus 187 ~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 187 YIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999886 4457788889999999999999999999998863 44 66688888888888998876 5688888887
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 043758 859 HDHVPCLSNCNWLLNILCQEKHFHEAQIVL 888 (918)
Q Consensus 859 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 888 (918)
.. |.++. +.....+.+.++++..-|
T Consensus 264 ~~-P~~~~----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 264 AH-RSHPF----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HC-TTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred hC-CCChH----HHHHHHHHHHHHHHHHHc
Confidence 75 55554 334455666666655433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=6e-16 Score=170.21 Aligned_cols=152 Identities=9% Similarity=0.065 Sum_probs=126.6
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHH---HcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043758 723 PNLYLYNDIFLLLCGVGRMDDAYDHFQMMK---REGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYN 799 (918)
Q Consensus 723 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~---~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 799 (918)
....+||++|++|++.|++++|.++|++|. ..|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345799999999999999999999998876 45899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCC------cccHHHHH
Q 043758 800 TLLKGLCQAGRL-SHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPC------LSNCNWLL 872 (918)
Q Consensus 800 ~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~ 872 (918)
.+|.++++.|+. ++|.++|++|.+.|+.||..+|++++....+. .+++.++++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999985 78999999999999999999999888654433 344444444 2223332 33455677
Q ss_pred HHHHhcC
Q 043758 873 NILCQEK 879 (918)
Q Consensus 873 ~~~~~~g 879 (918)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-16 Score=172.72 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=100.7
Q ss_pred cccHHHHHHHHhccCchHHHHHHHHHHHh---CCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 043758 168 LHPYKSLFYALCKNIRTVEAESFAREMES---QGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTL 244 (918)
Q Consensus 168 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 244 (918)
..+|++++.+||+.|++++|..+|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45788889999999999999888887764 478889999999999999999999999999999888889999999999
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHhCCCCccHhhHHHHHHHHHhc
Q 043758 245 IHGFFKMGLF-DKGWVLYSQMSDWGFQPNMVTDLIMISNYCRE 286 (918)
Q Consensus 245 l~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 286 (918)
|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9988888874 67888999998889889998888887655544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-13 Score=132.38 Aligned_cols=197 Identities=13% Similarity=0.032 Sum_probs=107.9
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
++.++..+...+...|++++|+..|+++++.. |.+...+..+...+.+.|++++|+..|++..+. .+.+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 44455566666666666666666666666554 445556666666666666666666666666551 122334455555
Q ss_pred HHHhcc-----------CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 043758 176 YALCKN-----------IRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTL 244 (918)
Q Consensus 176 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 244 (918)
.++... |++++|...|++..+..+. +...|..+..+|...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 555555 6666666666666655333 45556666666666666666666666666554 455556666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043758 245 IHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSK 299 (918)
Q Consensus 245 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 299 (918)
..++...|++++|...|++..+.. +.+...+..+...+...|++++|...|+..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666665543 334555555666666666666666665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.6e-13 Score=143.10 Aligned_cols=245 Identities=10% Similarity=-0.028 Sum_probs=90.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcH---HHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCC---
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKF---LEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKG--- 146 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 146 (918)
.+.|++++|.++|+.+.+.+ ++.++..+...|...|+. ++|+.+|++..+. +...+..+...+...+
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CC
T ss_pred HhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCC
Confidence 34445555555555554443 222344444444445554 5555555555432 3334444444333333
Q ss_pred --ChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHH---HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHH
Q 043758 147 --FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVE---AESFAREMESQGFYVDKLMYTSLINGYCSNRNMKM 221 (918)
Q Consensus 147 --~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 221 (918)
+.++|+++|++..+ .+ +...+..|...|...+..++ +.+.+......| ++..+..|...|...+.+++
T Consensus 87 ~~~~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFA-NG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HHHHHHHHHHHHHHHH-TT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 44555555555554 22 12244444444444333222 222222222221 33444444444444443333
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhc----CCHHHHHH
Q 043758 222 AMRLFFRMLKTGCEPDSYTCNTLIHGFFKMG---LFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCRE----GEVDAALM 294 (918)
Q Consensus 222 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~ 294 (918)
+......+.+.-...+...+..+...+...| +.++|.+.|++..+.| +++...+..|..+|... +++++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 3333222221111112224444444444455 5555555555555544 33333333344444332 34555555
Q ss_pred HHHHHhhCCCCCCcchHHHHHHH-H--HhcCChhHHHHHHHHHHh
Q 043758 295 LLNSKVSSNLAPSVHCYTVLIDA-L--YKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~ 336 (918)
.|+... . -+...+..|... + ...+++++|...|++..+
T Consensus 239 ~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 239 LLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp HHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 555444 1 233344444443 2 234444555555444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-12 Score=139.31 Aligned_cols=219 Identities=11% Similarity=0.021 Sum_probs=116.1
Q ss_pred HHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh---hHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 043758 102 SILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL---DEVLEVVNIMRKKKGLVPALHPYKSLFYAL 178 (918)
Q Consensus 102 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~ 178 (918)
.+...+.+.|++++|+.+|++..+.+ +...+..+...|...|+. ++|+++|++..+ . +...+..+..++
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~-~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD-T----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh-C----CHHHHHHHHHHH
Confidence 46677788899999999999988776 344556666667777777 889999988876 2 555666666644
Q ss_pred hccC-----chHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChH---HHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 043758 179 CKNI-----RTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMK---MAMRLFFRMLKTGCEPDSYTCNTLIHGFFK 250 (918)
Q Consensus 179 ~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 250 (918)
...+ ++++|...|++..+.|. ...+..|...|...+..+ ++.+.+......| +...+..+...+..
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 4444 77888888888888653 347777777777655433 3444444444433 23455556666666
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhc----CC
Q 043758 251 MGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREG---EVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKH----NR 323 (918)
Q Consensus 251 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~ 323 (918)
.+.++++......+.+.-...++..+..|..+|...| +.++|...|+...+.| +++...+..|...|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 6654444433222222111223336666666777777 6777777777776665 34444444555555433 45
Q ss_pred hhHHHHHHHHHH
Q 043758 324 LMEVDELYKKML 335 (918)
Q Consensus 324 ~~~a~~~~~~~~ 335 (918)
+++|...|++..
T Consensus 233 ~~~A~~~~~~aa 244 (452)
T 3e4b_A 233 EKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHHHHHG
T ss_pred HHHHHHHHHHHc
Confidence 666666665553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-13 Score=140.76 Aligned_cols=250 Identities=10% Similarity=-0.011 Sum_probs=191.0
Q ss_pred chhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhc-HHHHHHHHHHHhhcCCCCcchhHHHHH
Q 043758 61 SQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEK-FLEAFDYFIKICNAGVDLNCWSYNVLI 139 (918)
Q Consensus 61 ~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 139 (918)
+.++...++.++.+.|++++|+..|+++++.++. +..+|+.+..++...|+ +++|+..|++++... +-+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 4456666777778888999999999999888755 67788888888999996 999999999998876 55778888899
Q ss_pred HHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc-CCC
Q 043758 140 DGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCS-NRN 218 (918)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~ 218 (918)
.++...|++++|+..|+++++. -+-+...|..+..++.+.|++++|...|+++++..+. +...|+.+..++.. .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence 9999999999999999998872 2345677888888888889999999999998887655 77888888888888 566
Q ss_pred hHHH-----HHHHHHHHhcCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC----
Q 043758 219 MKMA-----MRLFFRMLKTGCEPDSYTCNTLIHGFFKMG--LFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREG---- 287 (918)
Q Consensus 219 ~~~A-----~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 287 (918)
.++| +..|++..+.. +-+...|+.+..++...| ++++|.+.+..+ +.. +.+...+..+..+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccc
Confidence 5777 47788887753 224557777777777777 578888888887 332 455677788888887764
Q ss_pred -----CHHHHHHHHHHH-hhCCCCCCcchHHHHHHHHH
Q 043758 288 -----EVDAALMLLNSK-VSSNLAPSVHCYTVLIDALY 319 (918)
Q Consensus 288 -----~~~~A~~~~~~~-~~~~~~~~~~~~~~ll~~~~ 319 (918)
..++|.++|+.+ .+.+ +.....|..+...+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 258888888888 5544 333445655555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-13 Score=135.08 Aligned_cols=218 Identities=11% Similarity=0.035 Sum_probs=143.7
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCC--Cc----chhHHHHHHHH
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVD--LN----CWSYNVLIDGL 142 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~l~~~~ 142 (918)
+..+...|++++|...|+.+.+.+ .++.++..++.++...|++++|+..++++.+.... ++ ..++..+...+
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 344466677777777777777666 46667777888888888888888888777654311 11 46677777777
Q ss_pred HcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHH
Q 043758 143 CYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMA 222 (918)
Q Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 222 (918)
...|++++|++.|+.+.+ ..|+ ...+...|++++|...++++....+. +...|..+...+...|++++|
T Consensus 90 ~~~~~~~~A~~~~~~a~~---~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLT---EHRT-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHTTCHHHHHHHHHHHHH---HCCC-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHh---cCch-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHH
Confidence 778888888888877776 2233 23345556777777777777765322 445666677777777777777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043758 223 MRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 223 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 301 (918)
+..|++..+.. +.+..++..+..++...|++++|...++...+.. +.+...+..+...|...|++++|...|+...+
T Consensus 159 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 159 VKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777776653 2345566666666677777777777777766653 33455666666666666666666666666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-13 Score=130.01 Aligned_cols=201 Identities=12% Similarity=-0.058 Sum_probs=157.5
Q ss_pred CCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHH
Q 043758 129 DLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTS 208 (918)
Q Consensus 129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (918)
|++...+..+...+.+.|++++|+..|+...+ -.+.+...+..+..++.+.|++++|...|++..+..+. +...|..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 56778889999999999999999999999986 23445677888888999999999999999999987654 7788999
Q ss_pred HHHHHhcC-----------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHH
Q 043758 209 LINGYCSN-----------RNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDL 277 (918)
Q Consensus 209 li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (918)
+..+|... |++++|+..|++..+.. +-+...+..+..++...|++++|...|++..+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 99999999 99999999999998863 2345678888889999999999999999998887 6788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 278 IMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 278 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
.+...|...|++++|...|+...+.. |.+...+..+...+...|++++|...|++...
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999988765 45677888889999999999999999887643
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.3e-13 Score=133.58 Aligned_cols=227 Identities=9% Similarity=-0.011 Sum_probs=192.8
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCC-CCCC----cccH
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKG-LVPA----LHPY 171 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~ 171 (918)
...+..+...+...|++++|+..|+++.+.. .+..++..+...+...|++++|++.++.+.+..+ ..++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4478888999999999999999999999887 7888999999999999999999999999876211 1112 4678
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 043758 172 KSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKM 251 (918)
Q Consensus 172 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 251 (918)
..+..++...|++++|...|++..+.. |+. ..+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 888899999999999999999999863 342 34666788999999999998762 22345788888899999
Q ss_pred CChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 043758 252 GLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELY 331 (918)
Q Consensus 252 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 331 (918)
|++++|...++++.+.. +.+..++..+...|...|++++|...|+...+.. +.+..+|..+..++...|++++|...|
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999998875 5578889999999999999999999999998875 456788999999999999999999999
Q ss_pred HHHHhC
Q 043758 332 KKMLAN 337 (918)
Q Consensus 332 ~~~~~~ 337 (918)
++..+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-12 Score=130.91 Aligned_cols=229 Identities=10% Similarity=-0.019 Sum_probs=149.7
Q ss_pred hhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchh----HHHHHHHHH
Q 043758 68 YQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWS----YNVLIDGLC 143 (918)
Q Consensus 68 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~ 143 (918)
++..+...|++++|+..|+.+++.++. +..++..+..++...|++++|+..++++.+.. ++... |..+...+.
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHH
Confidence 344446777777777777777776643 44577777777788888888888888777632 23322 677777777
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHH
Q 043758 144 YKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAM 223 (918)
Q Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 223 (918)
..|++++|++.|+...+. .+.+...+..+..++...|++++|...|++..+..+. +...|..+...+...+++++|.
T Consensus 86 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888777762 2334566777777777777888887777777766333 5566666662333445777777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHhCC-CCcc------HhhHHHHHHHHHhcCCHHHHH
Q 043758 224 RLFFRMLKTGCEPDSYTCNTLIHGFFKMGL---FDKGWVLYSQMSDWG-FQPN------MVTDLIMISNYCREGEVDAAL 293 (918)
Q Consensus 224 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A~ 293 (918)
..|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ..++..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777652 2234556666666666666 666777777665531 0122 145566666777777777777
Q ss_pred HHHHHHhhCC
Q 043758 294 MLLNSKVSSN 303 (918)
Q Consensus 294 ~~~~~~~~~~ 303 (918)
+.|+...+..
T Consensus 242 ~~~~~al~~~ 251 (272)
T 3u4t_A 242 AAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 7777766654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-12 Score=129.27 Aligned_cols=239 Identities=12% Similarity=0.046 Sum_probs=193.0
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCccc----HH
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHP----YK 172 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~ 172 (918)
+..+...+..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|++.++.+.+ .+ ++... |.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~~~~ 78 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KV--NATKAKSADFE 78 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TS--CTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cc--CchhHHHHHHH
Confidence 3466778888999999999999999999876 55677999999999999999999999999987 33 33333 78
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 043758 173 SLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMG 252 (918)
Q Consensus 173 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 252 (918)
.+..++...|++++|...|++..+..+. +..+|..+...|...|++++|+..|++..+.. +.+...+..+...+...+
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHH
Confidence 8889999999999999999999987554 77899999999999999999999999998762 334556777763445556
Q ss_pred ChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCC-CCCC------cchHHHHHHHHHhcC
Q 043758 253 LFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGE---VDAALMLLNSKVSSN-LAPS------VHCYTVLIDALYKHN 322 (918)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~ll~~~~~~g 322 (918)
++++|...++++.+.. +.+...+..+...+...|+ .+.|...|+...+.. ..|+ ..+|..+...|...|
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 9999999999998875 4457778888888888888 888888888776531 0133 257788899999999
Q ss_pred ChhHHHHHHHHHHhCCCCCChh
Q 043758 323 RLMEVDELYKKMLANRVAPDHL 344 (918)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~~~~ 344 (918)
++++|.+.|++..+. .|+..
T Consensus 236 ~~~~A~~~~~~al~~--~p~~~ 255 (272)
T 3u4t_A 236 DKVKADAAWKNILAL--DPTNK 255 (272)
T ss_dssp CHHHHHHHHHHHHHH--CTTCH
T ss_pred CHHHHHHHHHHHHhc--CccHH
Confidence 999999999999874 45543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=9e-13 Score=132.72 Aligned_cols=249 Identities=11% Similarity=-0.063 Sum_probs=187.3
Q ss_pred hHhcCChHHHHHHHHHHHhCCCC---CChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 72 FVALGNIEDALRHFDRLISKNIV---PIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 72 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
+...|++++|+..|+.+.+..+. .+..++..++..+...|++++|+..|+++.+.. +.+..++..++..+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 35668889999999998886421 245688889999999999999999999998876 55778899999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHH
Q 043758 149 DEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFR 228 (918)
Q Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 228 (918)
++|++.|+.+.+. .+.+...+..+..++...|++++|...|+++.+.. |+.......+..+...|++++|...+++
T Consensus 94 ~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 94 DAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999872 23456788888889999999999999999998864 3444444455555677999999999988
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---ccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 043758 229 MLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQ---PNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLA 305 (918)
Q Consensus 229 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 305 (918)
..... +++...+ .++..+...++.++|...++........ .+..++..+...|...|++++|...|+.....+
T Consensus 170 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 245 (275)
T 1xnf_A 170 HFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-- 245 (275)
T ss_dssp HHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--
Confidence 77653 3343344 3666677778888899998888765311 125678888899999999999999999988754
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHH
Q 043758 306 PSVHCYTVLIDALYKHNRLMEVDELY 331 (918)
Q Consensus 306 ~~~~~~~~ll~~~~~~g~~~~a~~~~ 331 (918)
|+. +.....++...|++++|++.+
T Consensus 246 p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTT--CHHHHHHHHHHHHHHHC----
T ss_pred chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 322 334456777788888887766
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-12 Score=130.66 Aligned_cols=252 Identities=12% Similarity=-0.022 Sum_probs=186.8
Q ss_pred hhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHH
Q 043758 3 LINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDAL 82 (918)
Q Consensus 3 ~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~ 82 (918)
+..+|++++|...++.++...+..+. .+..++..+..++ ...|++++|.
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~~-----------------~~~~~~~~A~ 63 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDD--------------ERAQLLYERGVLY-----------------DSLGLRALAR 63 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHH--------------HHHHHHHHHHHHH-----------------HHTTCHHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCc--------------hhHHHHHHHHHHH-----------------HHcccHHHHH
Confidence 45678899999999998776432100 0223344445555 5667777777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcC
Q 043758 83 RHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKK 162 (918)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 162 (918)
..|+.+.+.++. +..+|..++.++...|++++|+..|+++.+.. +.+..++..++..+...|++++|++.|+.+.+
T Consensus 64 ~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-- 139 (275)
T 1xnf_A 64 NDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ-- 139 (275)
T ss_dssp HHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--
Confidence 778887776644 67799999999999999999999999999876 55778999999999999999999999999987
Q ss_pred CCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC--C-Chh
Q 043758 163 GLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCE--P-DSY 239 (918)
Q Consensus 163 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p-~~~ 239 (918)
..|+.......+..+...|++++|...+++....... +...+ .++..+...++.++|+..+++..+.... | +..
T Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (275)
T 1xnf_A 140 -DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSE 216 (275)
T ss_dssp -HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred -hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccH
Confidence 3455555555555667779999999999888776432 44444 4777888889999999999988754211 1 146
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHH
Q 043758 240 TCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLL 296 (918)
Q Consensus 240 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 296 (918)
.+..+...+...|++++|...|+++.... +.+.. .....+...|++++|.+.+
T Consensus 217 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 217 TNFYLGKYYLSLGDLDSATALFKLAVANN-VHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTTCH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chhHH---HHHHHHHHHHHHHhhHHHH
Confidence 78888999999999999999999999764 22322 2345677788888887776
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-12 Score=131.74 Aligned_cols=240 Identities=11% Similarity=-0.057 Sum_probs=201.0
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCC-hhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGF-LDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
..+|..+..++...|++++|+..|++++... +.+..+|+.+..++...|+ +++|+..|+++++. .+.+...|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 4578888888999999999999999999886 5677899999999999997 99999999999972 234567888999
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCh
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFK-MGLF 254 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~ 254 (918)
.++...|++++|...|+++.+..+. +...|..+..++...|++++|+..|+++++.. +-+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999998665 88899999999999999999999999999874 3356789999999988 6665
Q ss_pred hHH-----HHHHHHHHhCCCCccHhhHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcC-----
Q 043758 255 DKG-----WVLYSQMSDWGFQPNMVTDLIMISNYCREG--EVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHN----- 322 (918)
Q Consensus 255 ~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----- 322 (918)
++| ...+++.+... +.+...|..+..++...| ++++|.+.+..+ +.+ +.+...+..+..+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccccc
Confidence 888 48888888875 556788998999998888 689999999888 433 456678888999998874
Q ss_pred ----ChhHHHHHHHHH-HhCCCCCChhhH
Q 043758 323 ----RLMEVDELYKKM-LANRVAPDHLLS 346 (918)
Q Consensus 323 ----~~~~a~~~~~~~-~~~~~~~~~~~~ 346 (918)
..++|+++|+++ .+ +.|...-|
T Consensus 329 ~~~~~~~~A~~~~~~l~~~--~DP~r~~~ 355 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKE--KDTIRKEY 355 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHT--TCGGGHHH
T ss_pred chHHHHHHHHHHHHHHHHH--hCchhHHH
Confidence 258999999998 55 45554433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-11 Score=120.66 Aligned_cols=224 Identities=15% Similarity=0.027 Sum_probs=159.6
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc----CCChhHHHHHHHHHHhcCCCCCCcccH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY----KGFLDEVLEVVNIMRKKKGLVPALHPY 171 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 171 (918)
++.++..+...+...|++++|+..|++..+.+ +..++..+...+.. .+++++|++.|++..+ .+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CC---CHHHH
Confidence 44566666677777777777777777776633 34566666677776 7777777777777766 32 55566
Q ss_pred HHHHHHHhc----cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHhcCCCCChhhHHH
Q 043758 172 KSLFYALCK----NIRTVEAESFAREMESQGFYVDKLMYTSLINGYCS----NRNMKMAMRLFFRMLKTGCEPDSYTCNT 243 (918)
Q Consensus 172 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 243 (918)
..+..+|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 666666766 777777777777777663 66677777777777 788888888888877654 4456666
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCcchHHHHH
Q 043758 244 LIHGFFK----MGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCR----EGEVDAALMLLNSKVSSNLAPSVHCYTVLI 315 (918)
Q Consensus 244 ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 315 (918)
+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 6666666 778888888888877764 45666677777777 788888888888877754 255677777
Q ss_pred HHHHh----cCChhHHHHHHHHHHhCC
Q 043758 316 DALYK----HNRLMEVDELYKKMLANR 338 (918)
Q Consensus 316 ~~~~~----~g~~~~a~~~~~~~~~~~ 338 (918)
..|.. .+++++|...|++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777 788888888888887754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-11 Score=121.35 Aligned_cols=223 Identities=12% Similarity=0.054 Sum_probs=191.8
Q ss_pred hhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhc----hhcHHHHHHHHHHHhhcCCCCcchhHHH
Q 043758 62 QSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFA----EEKFLEAFDYFIKICNAGVDLNCWSYNV 137 (918)
Q Consensus 62 ~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 137 (918)
.++...++..+...|++++|...|+++.+.+ ++.++..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3455555666678888999999999988843 56688889999999 999999999999999886 6778899
Q ss_pred HHHHHHc----CCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhc----cCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 043758 138 LIDGLCY----KGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCK----NIRTVEAESFAREMESQGFYVDKLMYTSL 209 (918)
Q Consensus 138 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 209 (918)
+...+.. .+++++|++.|++..+ .+ +...+..+..+|.. .+++++|...|++..+.+ +...+..+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACD-LK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHH-cC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 9999999 9999999999999988 33 67788888888988 999999999999999875 67788888
Q ss_pred HHHHhc----CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCccHhhHHHHHH
Q 043758 210 INGYCS----NRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFK----MGLFDKGWVLYSQMSDWGFQPNMVTDLIMIS 281 (918)
Q Consensus 210 i~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 281 (918)
...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888888 999999999999998863 45778888888888 999999999999999875 3667778888
Q ss_pred HHHh----cCCHHHHHHHHHHHhhCC
Q 043758 282 NYCR----EGEVDAALMLLNSKVSSN 303 (918)
Q Consensus 282 ~~~~----~g~~~~A~~~~~~~~~~~ 303 (918)
.|.. .+++++|.+.|+...+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8988 999999999999988765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=128.25 Aligned_cols=201 Identities=12% Similarity=0.057 Sum_probs=107.7
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
...+|..++..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|++.++.+.+. .+.+...+..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 34455666666666777777777777766544 345556666666666677777777777666651 123345555566
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFD 255 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 255 (918)
.++...|++++|...++++.+..+. +...+..+...|...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666666654332 45556666666666666666666666665542 223445555556666666666
Q ss_pred HHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 256 KGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
+|...++++.+.. +.+..++..+...|...|++++|...|+.+.+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 6666666665543 334555555666666666666666666665554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.7e-12 Score=123.88 Aligned_cols=93 Identities=13% Similarity=0.004 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHh
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCR 285 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (918)
+..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 144 FENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKV 221 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 3333334444444444444444433321 1122333333333444444444444444433322 2223333333333444
Q ss_pred cCCHHHHHHHHHHHh
Q 043758 286 EGEVDAALMLLNSKV 300 (918)
Q Consensus 286 ~g~~~~A~~~~~~~~ 300 (918)
.|+.++|.+.++.+.
T Consensus 222 ~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 222 FEDRDTAASYGLQLK 236 (252)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 444444444444333
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-11 Score=122.60 Aligned_cols=199 Identities=11% Similarity=-0.022 Sum_probs=168.6
Q ss_pred HhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc
Q 043758 65 LLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY 144 (918)
Q Consensus 65 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 144 (918)
....+..+...|++++|...|+.+.+.++. +..++..++..+...|++++|+..|+++.+.. +.+...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 334455567888888888888888877643 67789999999999999999999999998876 5577889999999999
Q ss_pred CCChhHHHHHHHHHHhcCCCCC-CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHH
Q 043758 145 KGFLDEVLEVVNIMRKKKGLVP-ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAM 223 (918)
Q Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 223 (918)
.|++++|++.++.+.+ .+..| +...+..+..++...|++++|...|++..+..+. +...+..+...|...|++++|.
T Consensus 118 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp TTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999986 33344 4567788888999999999999999999887543 6888999999999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 224 RLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWG 268 (918)
Q Consensus 224 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 268 (918)
..|+++.+.. +.+...+..+...+...|++++|.++++++.+..
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999998763 3456678888889999999999999999998864
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-11 Score=120.27 Aligned_cols=201 Identities=10% Similarity=-0.018 Sum_probs=123.1
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFY 176 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~ 176 (918)
+.++..++..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+.+. .+.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 4455566666666666666666666666554 334556666666666666666666666666551 1234455556666
Q ss_pred HHhcc-CchHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 043758 177 ALCKN-IRTVEAESFAREMESQGFYV-DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLF 254 (918)
Q Consensus 177 ~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 254 (918)
++... |++++|...++++.+.+..| +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 66666 66666666666666621122 24556666667777777777777777766542 22345666666667777777
Q ss_pred hHHHHHHHHHHhCCCC-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 255 DKGWVLYSQMSDWGFQ-PNMVTDLIMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 255 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
++|...++++.+.. + .+...+..+...+...|+.+.|..+++.+...
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777766553 2 45555666666666777777777777766543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-11 Score=119.06 Aligned_cols=200 Identities=9% Similarity=-0.150 Sum_probs=107.3
Q ss_pred chhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 043758 132 CWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLIN 211 (918)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 211 (918)
...+..++..+...|++++|++.|+.+.+. .+.+...+..+..++...|++++|...+++..+..+. +..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 344555555555666666666666655541 1223445555555555566666666666655554322 4455555555
Q ss_pred HHhcC-CChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCH
Q 043758 212 GYCSN-RNMKMAMRLFFRMLKTGCEPD-SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEV 289 (918)
Q Consensus 212 ~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 289 (918)
.|... |++++|+..|+++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..+...|...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 66666 666666666666555211222 2345555555556666666666666555543 23345555555556666666
Q ss_pred HHHHHHHHHHhhCCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 290 DAALMLLNSKVSSNLA-PSVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 290 ~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
++|...++.+.... + .+...+..+...+...|+.+.|..+++.+..
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666665555443 2 3444455555555555666666665555543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.42 E-value=8.6e-09 Score=114.46 Aligned_cols=148 Identities=8% Similarity=-0.029 Sum_probs=101.5
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDIL 493 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 493 (918)
..|...+....+.|..+.|..+|...++.........|......-. ...++.+.|..+|
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~---------------------~~~~d~e~Ar~if 493 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY---------------------HISKDTKTACKVL 493 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH---------------------TTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH---------------------HhCCCHHHHHHHH
Confidence 4677888888888999999999999987510112222221111111 1124578888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--cHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 043758 494 DQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDP--DEVFFTTMINGYLQNRKPIEACQLFEKMKENSV 571 (918)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 571 (918)
+..++. .+.+...+...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.++.+++.+.
T Consensus 494 e~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~-- 570 (679)
T 4e6h_A 494 ELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK-- 570 (679)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--
T ss_pred HHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 888876 44467777888888888899999999999988763211 3457778888778889999999999988876
Q ss_pred CCCchhHHHHHHHH
Q 043758 572 QPGSYPYTALISGL 585 (918)
Q Consensus 572 ~~~~~~~~~l~~~~ 585 (918)
.|+......+++-|
T Consensus 571 ~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 571 FPEVNKLEEFTNKY 584 (679)
T ss_dssp STTCCHHHHHHHHT
T ss_pred CCCCcHHHHHHHHh
Confidence 45555554444433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-12 Score=124.31 Aligned_cols=200 Identities=11% Similarity=0.018 Sum_probs=162.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
...|++++|...|+++.+.++. +..++..++..+...|++++|+..|+++.+.. +.+..++..+...+...|++++|+
T Consensus 34 ~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 34 SEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp --------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHH
Confidence 5666667777777877776644 67788899999999999999999999998875 557788999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
+.++.+.+. .+.+...+..+..++...|++++|...++++.+..+. +...+..+...|...|++++|+..|+++.+.
T Consensus 112 ~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 112 DMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999872 2445677888889999999999999999999887543 7888999999999999999999999999876
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHH
Q 043758 233 GCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIM 279 (918)
Q Consensus 233 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (918)
. +.+..++..+..++...|++++|...++++.+.. +.+...+..+
T Consensus 189 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 189 D-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 3 3456788999999999999999999999998874 3344444443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-11 Score=132.67 Aligned_cols=303 Identities=12% Similarity=-0.002 Sum_probs=210.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc----HHHHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCC
Q 043758 502 KPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPD----EVFFTTMINGYLQNRKPIEACQLFEKMKEN----SVQP 573 (918)
Q Consensus 502 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~ 573 (918)
......+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3456667778888999999999999999998864 223 356778888999999999999999887542 2112
Q ss_pred -CchhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCC--------------------HH
Q 043758 574 -GSYPYTALISGLVKKGMVDLGCMYLDRMLAD----GFV-PNVVLYTALINHFLRAGE--------------------FE 627 (918)
Q Consensus 574 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~--------------------~~ 627 (918)
...++..+...+...|++++|...+++..+. +.. ....++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2346677788888999999999999887764 101 114477788888888888 66
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChh
Q 043758 628 FASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKG 707 (918)
Q Consensus 628 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 707 (918)
+|...+++..+
T Consensus 165 ~A~~~~~~al~--------------------------------------------------------------------- 175 (406)
T 3sf4_A 165 AAVDFYEENLS--------------------------------------------------------------------- 175 (406)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 66666665542
Q ss_pred HHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC-CCc----HHhHHHHHHHHHhcCCHHHHHH
Q 043758 708 TVQKIVLKVKDIEFMP-NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGL-RPN----QVTFCILINGHIAAGEIDQAIG 781 (918)
Q Consensus 708 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~ 781 (918)
+... .+..+ ...++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|..
T Consensus 176 ----~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 176 ----LVTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp ----HHHH---TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----HHHh---ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 1111 11111 235677778888888888888888887765310 111 2266777788888899999998
Q ss_pred HHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCChhhHHH
Q 043758 782 LFNQMNAD----GCVP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKR----GFVPK-KATYEHLLECFCANCLSIPAFN 851 (918)
Q Consensus 782 ~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~A~~ 851 (918)
.+++..+. +..+ ...++..+...|...|++++|...+++..+. +..+. ..++..+..++.+.|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88887653 1111 1457778888888999999999988887642 11111 3466777778888999999998
Q ss_pred HHHHHHhC----CC-CCCcccHHHHHHHHHhcCCH
Q 043758 852 MFKEMIVH----DH-VPCLSNCNWLLNILCQEKHF 881 (918)
Q Consensus 852 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 881 (918)
.+++.... +. +....++..++.++...|+.
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 88887643 21 12255677888888888765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-08 Score=113.14 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=56.7
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChhHHHHH
Q 043758 740 RMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP--DKTVYNTLLKGLCQAGRLSHVFSV 817 (918)
Q Consensus 740 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 817 (918)
+.+.|..+|+..++. .+-+...+...+.-....|+.+.|..+|+..+.....+ ....|...+..-...|+.+.+..+
T Consensus 485 d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 485 DTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 467777777766654 22233344555555556677777777777776642211 235666666666677777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHH
Q 043758 818 FYSMHKRGFVPKKATYEHLLE 838 (918)
Q Consensus 818 ~~~~~~~~~~p~~~~~~~l~~ 838 (918)
.+++.+. .|+......+..
T Consensus 564 ~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 564 EKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp HHHHHHH--STTCCHHHHHHH
T ss_pred HHHHHHh--CCCCcHHHHHHH
Confidence 7777653 444444444444
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.35 E-value=9.4e-12 Score=133.72 Aligned_cols=269 Identities=13% Similarity=0.026 Sum_probs=204.1
Q ss_pred hhhhhHhcCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHhhchhcHHHHHHHHHHHhhcC-----CCCcchhHHHH
Q 043758 68 YQNDFVALGNIEDALRHFDRLISKNIVPIK----LACVSILRGLFAEEKFLEAFDYFIKICNAG-----VDLNCWSYNVL 138 (918)
Q Consensus 68 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l 138 (918)
.+..+...|++++|...|+++++.++. +. .+|..+...|...|++++|+..|+++.... .+....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 345568899999999999999887643 33 478889999999999999999999877541 12344678889
Q ss_pred HHHHHcCCChhHHHHHHHHHHhcC---C-CCCCcccHHHHHHHHhccCc-----------------hHHHHHHHHHHHhC
Q 043758 139 IDGLCYKGFLDEVLEVVNIMRKKK---G-LVPALHPYKSLFYALCKNIR-----------------TVEAESFAREMESQ 197 (918)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~~~~~~ 197 (918)
...+...|++++|++.+++..+.. + .+.....+..+..+|...|+ +++|...+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999877521 1 11224467788888999999 99999988876542
Q ss_pred ----CC-CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 198 ----GF-YVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCE-PD----SYTCNTLIHGFFKMGLFDKGWVLYSQMSDW 267 (918)
Q Consensus 198 ----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 267 (918)
+. .....++..+...|...|++++|+..|++..+.... ++ ..++..+...+...|++++|...+++....
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11 112347888899999999999999999998753111 12 226788888999999999999999988654
Q ss_pred CC--C---ccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 268 GF--Q---PNMVTDLIMISNYCREGEVDAALMLLNSKVSSNL-----APSVHCYTVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 268 ~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
.. . ....++..+...|...|++++|...+++...... .....++..+...|...|++++|...|++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 21 0 1246778889999999999999999988765310 111346778889999999999999999988763
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-11 Score=131.48 Aligned_cols=199 Identities=11% Similarity=-0.028 Sum_probs=145.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHhc----CCC-CChhhHHHHHHHHHccCC-----------------hhHHHHHHHHHHHc
Q 043758 697 FSAVFSNGKKGTVQKIVLKVKDI----EFM-PNLYLYNDIFLLLCGVGR-----------------MDDAYDHFQMMKRE 754 (918)
Q Consensus 697 ~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~m~~~ 754 (918)
...+...|+++.|...+++..+. +.. ....++..+...|...|+ +++|+..+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34445556777776666655432 111 234678888999999999 99999998886542
Q ss_pred ----CCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 043758 755 ----GLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNADG-CVPD----KTVYNTLLKGLCQAGRLSHVFSVFYSMHKR 824 (918)
Q Consensus 755 ----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (918)
+-.|. ..++..+...|...|++++|+..+++..+.. -.++ ...+..+..+|...|++++|...+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11122 2367778888999999999999999987741 0112 237888899999999999999999987642
Q ss_pred ----CCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCC----C-CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 825 ----GFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHD----H-VPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 825 ----~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
+..+ ...++..+..++...|++++|...+++.+... . +....++..++.+|.+.|++++|.+.+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 13467778889999999999999999987542 0 112457889999999999999999999998775
Q ss_pred C
Q 043758 895 G 895 (918)
Q Consensus 895 ~ 895 (918)
-
T Consensus 373 ~ 373 (411)
T 4a1s_A 373 A 373 (411)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-10 Score=117.99 Aligned_cols=217 Identities=10% Similarity=0.004 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHhhc-------hhcH-------HHHHHHHHHHhh-cCCCCcchhHHHHHHHHH
Q 043758 79 EDALRHFDRLISKNIVPIKLACVSILRGLFA-------EEKF-------LEAFDYFIKICN-AGVDLNCWSYNVLIDGLC 143 (918)
Q Consensus 79 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 143 (918)
+.|...|++++...+. ++..|..++..+.. .|++ ++|...|++.+. .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 5778888888887644 67788888877754 3554 788888888776 33 345557777777777
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCCc-c-cHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHh-cCCChH
Q 043758 144 YKGFLDEVLEVVNIMRKKKGLVPAL-H-PYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYC-SNRNMK 220 (918)
Q Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~-~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~ 220 (918)
+.|++++|.++|+++.+ ..|+. . .|..++..+.+.|++++|..+|++..+..+. +...|...+.... ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHH
Confidence 88888888888888776 34432 2 5677777777777777777777777765432 3444443333322 257777
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCc--cHhhHHHHHHHHHhcCCHHHHHHHHH
Q 043758 221 MAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWG-FQP--NMVTDLIMISNYCREGEVDAALMLLN 297 (918)
Q Consensus 221 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 297 (918)
+|..+|++..+.. +-+...|..++..+...|++++|..+|++..... ++| ....|..++..+.+.|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777766542 2234566666666666777777777777776642 233 24456666666666677777777766
Q ss_pred HHhhC
Q 043758 298 SKVSS 302 (918)
Q Consensus 298 ~~~~~ 302 (918)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=133.05 Aligned_cols=270 Identities=13% Similarity=0.020 Sum_probs=201.4
Q ss_pred hhhhhhhHhcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHhhchhcHHHHHHHHHHHhhc----CC-CCcchhHH
Q 043758 66 LLYQNDFVALGNIEDALRHFDRLISKNIVPI----KLACVSILRGLFAEEKFLEAFDYFIKICNA----GV-DLNCWSYN 136 (918)
Q Consensus 66 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~ 136 (918)
...+..+...|++++|...|+++++.++. + ..++..+...+...|++++|+..++++... +. +....++.
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34455568888888888889988887543 3 357888999999999999999999987643 11 12245788
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhcCCCCCC----cccHHHHHHHHhccCc--------------------hHHHHHHHH
Q 043758 137 VLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA----LHPYKSLFYALCKNIR--------------------TVEAESFAR 192 (918)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~--------------------~~~a~~~~~ 192 (918)
.+...+...|++++|+..++...+.....++ ...+..+...+...|+ +++|...++
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 8889999999999999999987752111122 3467788888999999 999999888
Q ss_pred HHHhC----CCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHhcCChhHHHHHHH
Q 043758 193 EMESQ----GFYV-DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGC-EPD----SYTCNTLIHGFFKMGLFDKGWVLYS 262 (918)
Q Consensus 193 ~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~ 262 (918)
+..+. +..| ...++..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 76542 1111 234688888999999999999999998875311 122 2367888888999999999999999
Q ss_pred HHHhCC----CCc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----cchHHHHHHHHHhcCChhHHHHHHH
Q 043758 263 QMSDWG----FQP-NMVTDLIMISNYCREGEVDAALMLLNSKVSSNL-APS----VHCYTVLIDALYKHNRLMEVDELYK 332 (918)
Q Consensus 263 ~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~~~~a~~~~~ 332 (918)
+..... -.+ ...++..+...|...|++++|...++....... ..+ ..++..+...|...|++++|...|+
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 886531 111 155778889999999999999999988765310 011 4567788899999999999999998
Q ss_pred HHHh
Q 043758 333 KMLA 336 (918)
Q Consensus 333 ~~~~ 336 (918)
+..+
T Consensus 332 ~al~ 335 (406)
T 3sf4_A 332 KHLE 335 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=127.98 Aligned_cols=268 Identities=12% Similarity=0.009 Sum_probs=199.8
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHhhchhcHHHHHHHHHHHhhc----CC-CCcchhHHHHH
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPI----KLACVSILRGLFAEEKFLEAFDYFIKICNA----GV-DLNCWSYNVLI 139 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~ 139 (918)
+..+...|++++|...|+++.+.++. + ..++..+...+...|++++|+..++++... +. +....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 44557888999999999998887543 3 357788999999999999999999987643 11 12345788888
Q ss_pred HHHHcCCChhHHHHHHHHHHhcCCCCCC----cccHHHHHHHHhccCc--------------------hHHHHHHHHHHH
Q 043758 140 DGLCYKGFLDEVLEVVNIMRKKKGLVPA----LHPYKSLFYALCKNIR--------------------TVEAESFAREME 195 (918)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~~~ 195 (918)
..+...|++++|.+.+++..+...-.++ ..++..+...+...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999987652111122 3367778888889999 999998888765
Q ss_pred hC----CCC-CChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 196 SQ----GFY-VDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGC-EPD----SYTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 196 ~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
+. +.. .....+..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 111 1234688888999999999999999998875310 111 2367788888999999999999999886
Q ss_pred hCC----CCc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 266 DWG----FQP-NMVTDLIMISNYCREGEVDAALMLLNSKVSSN-----LAPSVHCYTVLIDALYKHNRLMEVDELYKKML 335 (918)
Q Consensus 266 ~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (918)
... -.+ ...++..+...|...|++++|...++...... ......++..+...+...|++++|...|++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 531 111 15577788899999999999999998876531 01113467788899999999999999999887
Q ss_pred hC
Q 043758 336 AN 337 (918)
Q Consensus 336 ~~ 337 (918)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 64
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-11 Score=132.25 Aligned_cols=216 Identities=12% Similarity=-0.005 Sum_probs=138.5
Q ss_pred hcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh-hHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHH
Q 043758 111 EKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL-DEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAES 189 (918)
Q Consensus 111 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 189 (918)
+++++++..++...... +.+...+..+...+...|++ ++|++.|++..+. .+.+...|..+..+|...|++++|..
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 44566666666655443 34555666666666677777 7777777776651 12335566666666777777777777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhcC---------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------C
Q 043758 190 FAREMESQGFYVDKLMYTSLINGYCSN---------RNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKM--------G 252 (918)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------g 252 (918)
.|++..+.. |+...+..+...|... |++++|+..|++..+.. +.+...|..+..++... |
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 777766653 3456666666667666 77777777777766652 22345666666666666 6
Q ss_pred ChhHHHHHHHHHHhCCCC---ccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHH
Q 043758 253 LFDKGWVLYSQMSDWGFQ---PNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDE 329 (918)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 329 (918)
++++|...|++..+.. + .+...+..+...|...|++++|.+.|++..+.. +.+..++..+..++...|++++|++
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776653 2 356667777777777777777777777766654 3345566667777777777777776
Q ss_pred HHHHH
Q 043758 330 LYKKM 334 (918)
Q Consensus 330 ~~~~~ 334 (918)
.+.++
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 55443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-11 Score=124.74 Aligned_cols=273 Identities=13% Similarity=0.007 Sum_probs=174.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCC-----chhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHH
Q 043758 545 TMINGYLQNRKPIEACQLFEKMKENSVQPG-----SYPYTALISGLVKKGMVDLGCMYLDRMLAD----GFV-PNVVLYT 614 (918)
Q Consensus 545 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~ 614 (918)
.....+...|++++|+..|+++.+.. |+ ...+..+...+...|++++|..+++...+. +.. ....++.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33445555566666666666555542 22 134445555566666666666666554432 111 1245667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchh
Q 043758 615 ALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKS 694 (918)
Q Consensus 615 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (918)
.+..++...|++++|...+++..+...
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~----------------------------------------------------- 114 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISR----------------------------------------------------- 114 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------------------------------------------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHH-----------------------------------------------------
Confidence 777888888888888888877653100
Q ss_pred hhHHHHHhCCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHccCC--------------------hhHHHHHHHHHHH
Q 043758 695 TAFSAVFSNGKKGTVQKIVLKVKDIEF-MPNLYLYNDIFLLLCGVGR--------------------MDDAYDHFQMMKR 753 (918)
Q Consensus 695 ~~~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m~~ 753 (918)
+.+. .....++..+...|...|+ +++|...+++...
T Consensus 115 -----------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 115 -----------------------ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp -----------------------HTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 0000 0012355555666666666 7777777766543
Q ss_pred c----CCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 754 E----GLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNAD----GCVP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 754 ~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
. +..|. ...+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 11121 236677778888999999999999888764 1111 124778888889999999999999988764
Q ss_pred C----CCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCC----C-CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 824 R----GFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHD----H-VPCLSNCNWLLNILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 824 ~----~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 893 (918)
. +..+ ...++..+...+...|++++|...+++++... . +....++..++.+|.+.|++++|...+++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2 1111 13467777788999999999999999886532 0 11145788999999999999999999999877
Q ss_pred CC
Q 043758 894 RG 895 (918)
Q Consensus 894 ~~ 895 (918)
..
T Consensus 332 ~~ 333 (338)
T 3ro2_A 332 IS 333 (338)
T ss_dssp C-
T ss_pred HH
Confidence 54
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-10 Score=108.90 Aligned_cols=167 Identities=13% Similarity=0.018 Sum_probs=147.1
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043758 724 NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRP-NQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLL 802 (918)
Q Consensus 724 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 802 (918)
++..|..+...|.+.|++++|+..|++.++. .| +...+..+..+|...|++++|+..+..+..... -+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence 6778999999999999999999999999885 44 455788899999999999999999999988632 2567788888
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH
Q 043758 803 KGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFH 882 (918)
Q Consensus 803 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 882 (918)
..+...++++.|...+.+..+. .+.+...+..+..++.+.|++++|+..+++.++.. |.++.++..++.+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 8999999999999999998863 23466788888889999999999999999999887 888999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 043758 883 EAQIVLDVMHKRG 895 (918)
Q Consensus 883 ~A~~~~~~~~~~~ 895 (918)
+|.+.+++..+..
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998865
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-10 Score=115.33 Aligned_cols=218 Identities=11% Similarity=-0.014 Sum_probs=176.0
Q ss_pred HHHHHHHHHHhhcCCCCcchhHHHHHHHHH-------cCCCh-------hHHHHHHHHHHhcCCCCCC-cccHHHHHHHH
Q 043758 114 LEAFDYFIKICNAGVDLNCWSYNVLIDGLC-------YKGFL-------DEVLEVVNIMRKKKGLVPA-LHPYKSLFYAL 178 (918)
Q Consensus 114 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~-~~~~~~ll~~~ 178 (918)
++|+..|++++... +.+...|..++..+. +.|++ ++|+.+|++..+ .+.|+ ...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~--~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT--TTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH--HhCcccHHHHHHHHHHH
Confidence 78899999998875 567778888887775 35886 899999999986 23444 55888999999
Q ss_pred hccCchHHHHHHHHHHHhCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCChhH
Q 043758 179 CKNIRTVEAESFAREMESQGFYVDKL-MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFF-KMGLFDK 256 (918)
Q Consensus 179 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~ 256 (918)
.+.|++++|..+|++..+..+. +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999986432 444 89999999999999999999999999863 234445544333322 3699999
Q ss_pred HHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCC--CcchHHHHHHHHHhcCChhHHHHHHHH
Q 043758 257 GWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN-LAP--SVHCYTVLIDALYKHNRLMEVDELYKK 333 (918)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (918)
|..+|+..++.. +.+...+..++..+.+.|++++|+.+|++..... ++| ....|..++......|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998764 4567889999999999999999999999999863 344 356788889999999999999999999
Q ss_pred HHhC
Q 043758 334 MLAN 337 (918)
Q Consensus 334 ~~~~ 337 (918)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-10 Score=123.82 Aligned_cols=301 Identities=10% Similarity=0.002 Sum_probs=200.8
Q ss_pred HHhcCCHHHHHHHHHHHHHC--CC--CCcHHHHHHHHHHH--HcCCChHHHH-----------HHHHHHHhCCCCCCchh
Q 043758 515 LCKEKRILEAEDMFKRMLKA--GI--DPDEVFFTTMINGY--LQNRKPIEAC-----------QLFEKMKENSVQPGSYP 577 (918)
Q Consensus 515 ~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~--~~~~~~~~A~-----------~~~~~~~~~~~~~~~~~ 577 (918)
+.+.+++++|..+++++.+. .+ .++...|..++..- ...+..+.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 35678888888888887652 22 22333333333211 1112222233 5555554321 11111
Q ss_pred H------HHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHH
Q 043758 578 Y------TALISGLVKKGMVDLGCMYLDRMLAD----GFVP-NVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLI 646 (918)
Q Consensus 578 ~------~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 646 (918)
+ ......+...|++++|...++...+. +-.+ ...++..+..+|...|+++.|+..+++..+.
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~------- 172 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI------- 172 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence 1 12445567789999999999988765 1111 3467888888899999999999888887531
Q ss_pred HHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCC--CCC
Q 043758 647 AYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEF--MPN 724 (918)
Q Consensus 647 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~--~~~ 724 (918)
+. +.+. +..
T Consensus 173 ------------------------------------------------------------------~~---~~~~~~~~~ 183 (383)
T 3ulq_A 173 ------------------------------------------------------------------YK---EHEAYNIRL 183 (383)
T ss_dssp ------------------------------------------------------------------HH---TCSTTHHHH
T ss_pred ------------------------------------------------------------------HH---hCccchHHH
Confidence 00 0000 112
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC
Q 043758 725 LYLYNDIFLLLCGVGRMDDAYDHFQMMKRE----GLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNAD----GC-VPD 794 (918)
Q Consensus 725 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~ 794 (918)
..+++.+...|...|++++|+..+++..+. +-.+. ..++..+..+|...|++++|+..+++..+. +. +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 457888889999999999999999987653 11111 136788889999999999999999998873 23 224
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHccCC---hhhHHHHHHHHHhCCCCCCccc
Q 043758 795 KTVYNTLLKGLCQAGRLSHVFSVFYSMHKR----GFVPKKATYEHLLECFCANCL---SIPAFNMFKEMIVHDHVPCLSN 867 (918)
Q Consensus 795 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~ 867 (918)
..++..+..+|...|++++|...+++..+. +-+.....+..+...+...|+ .++|+..+++.. ..+.....
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~ 341 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDF 341 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHH
Confidence 577889999999999999999999987642 111122235667778888888 777777777651 11334667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 868 CNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 868 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
+..++.+|...|++++|...+++..+..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999987643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-10 Score=108.22 Aligned_cols=166 Identities=11% Similarity=-0.043 Sum_probs=110.4
Q ss_pred CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 043758 167 ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIH 246 (918)
Q Consensus 167 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 246 (918)
+...|..+...|.+.|++++|...|++..+..+. +..+|..+..+|...|++++|+..+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3455666666666667777777777766665443 56667777777777777777777777766542 223445555566
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhH
Q 043758 247 GFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLME 326 (918)
Q Consensus 247 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 326 (918)
.+...++++.+...+.+..... +.+...+..+...|.+.|++++|.+.|+...+.+ |.+..+|..+..+|...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6667777777777777766654 4456666667777777777777777777766654 4456667777777777777777
Q ss_pred HHHHHHHHHh
Q 043758 327 VDELYKKMLA 336 (918)
Q Consensus 327 a~~~~~~~~~ 336 (918)
|++.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-11 Score=124.67 Aligned_cols=246 Identities=11% Similarity=0.041 Sum_probs=162.3
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHH
Q 043758 575 SYPYTALISGLVKKGMVDLGCMYLDRMLAD-------GFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIA 647 (918)
Q Consensus 575 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 647 (918)
..++..+...+...|++++|..+++++.+. ..+....++..+..+|...|++++|...+++..+.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 98 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI-------- 98 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------
Confidence 345666677777788888888877777663 22334567788888899999999999988887631
Q ss_pred HHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhh
Q 043758 648 YIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYL 727 (918)
Q Consensus 648 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 727 (918)
.........+.....
T Consensus 99 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 113 (311)
T 3nf1_A 99 -----------------------------------------------------------------REKTLGKDHPAVAAT 113 (311)
T ss_dssp -----------------------------------------------------------------HHHHHCTTCHHHHHH
T ss_pred -----------------------------------------------------------------HHHHhCCCChHHHHH
Confidence 000000111223467
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHc------CCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-
Q 043758 728 YNDIFLLLCGVGRMDDAYDHFQMMKRE------GLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNAD------GCVP- 793 (918)
Q Consensus 728 ~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~p- 793 (918)
+..+...|...|++++|...++++.+. +-.|+ ...+..+...+...|++++|+.+++++.+. +..|
T Consensus 114 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 193 (311)
T 3nf1_A 114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN 193 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 778888888899999999998888764 22233 336777888889999999999999988774 1133
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-------CCCCCHH-------HHHHHHHHHHccCChhhHHHHHHHHHhC
Q 043758 794 DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKR-------GFVPKKA-------TYEHLLECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 794 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
...++..+..+|...|++++|...++++.+. ...+... .+..+...+...+.+.+|...+......
T Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 273 (311)
T 3nf1_A 194 VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD 273 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC
Confidence 2467788888999999999999999888742 1122211 2222333445556677777778777765
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 860 DHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 860 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
. +.+..++..++.+|.+.|++++|.+.+++..+.
T Consensus 274 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 274 S-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4 667888999999999999999999999988764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=8.3e-11 Score=127.56 Aligned_cols=218 Identities=11% Similarity=-0.031 Sum_probs=182.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcH-HHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHH
Q 043758 75 LGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKF-LEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLE 153 (918)
Q Consensus 75 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 153 (918)
..++++++..++......+ .+...+..+..++...|++ ++|+..|+++.+.. +.+..+|..+...|...|++++|++
T Consensus 81 ~~~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3447777788887766553 3677889999999999999 99999999998876 5567899999999999999999999
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHhcc---------CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC--------
Q 043758 154 VVNIMRKKKGLVPALHPYKSLFYALCKN---------IRTVEAESFAREMESQGFYVDKLMYTSLINGYCSN-------- 216 (918)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 216 (918)
.|+...+ ..|+...+..+..++... |++++|...|++..+..+. +...|..+..+|...
T Consensus 159 ~~~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 159 CFSGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhcccc
Confidence 9999987 457777888888889998 9999999999999887554 788899999999988
Q ss_pred CChHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHH
Q 043758 217 RNMKMAMRLFFRMLKTGCE--PDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALM 294 (918)
Q Consensus 217 g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 294 (918)
|++++|+..|++..+.... .+...|..+..++...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886310 366788999999999999999999999998875 4567778888888999999888887
Q ss_pred HHHHH
Q 043758 295 LLNSK 299 (918)
Q Consensus 295 ~~~~~ 299 (918)
.+..+
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 66443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-10 Score=120.27 Aligned_cols=232 Identities=12% Similarity=0.012 Sum_probs=142.4
Q ss_pred HHHHhhchhcHHHHHHHHHHHhhc----CCCC-cchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC-----cccHH
Q 043758 103 ILRGLFAEEKFLEAFDYFIKICNA----GVDL-NCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA-----LHPYK 172 (918)
Q Consensus 103 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~ 172 (918)
....+...|++++|+..|+++... +-++ ...++..+...+...|+++.|++.+++..+...-.++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566667777777777666543 1011 2345666666677777777777766666542111111 23566
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHhcCCChHHHHHHHHHHHhc----CCCC-ChhhHH
Q 043758 173 SLFYALCKNIRTVEAESFAREMESQGFY-VD----KLMYTSLINGYCSNRNMKMAMRLFFRMLKT----GCEP-DSYTCN 242 (918)
Q Consensus 173 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~ 242 (918)
.+..+|...|++++|...|++..+.... ++ ..+++.+...|...|++++|+..|++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6666777777777777777665542110 11 236677777777888888888887777651 2212 234677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC----CCCccHhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCCCcchHHHHH
Q 043758 243 TLIHGFFKMGLFDKGWVLYSQMSDW----GFQPNMVTDLIMISNYCREGE---VDAALMLLNSKVSSNLAPSVHCYTVLI 315 (918)
Q Consensus 243 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~ll 315 (918)
.+...+...|++++|...+++..+. +-+.....+..+...|...|+ +++|..+++..... +.....+..+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY--ADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--HHHHHHHHHHH
Confidence 7777777888888888877776543 111122335567777777777 67777777665321 12334566777
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 043758 316 DALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~ 336 (918)
..|...|++++|...|++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888887764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=125.08 Aligned_cols=239 Identities=10% Similarity=-0.016 Sum_probs=128.3
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhc-------CCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcC-----CC
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNA-------GVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKK-----GL 164 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~ 164 (918)
..++..+...+...|++++|+..|+++.+. ..+....++..+...+...|++++|++.++...+.. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 335556666666666666666666665542 222334455666666666666666666666655410 11
Q ss_pred -CCCcccHHHHHHHHhccCchHHHHHHHHHHHhC------CC-CCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc----
Q 043758 165 -VPALHPYKSLFYALCKNIRTVEAESFAREMESQ------GF-YVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT---- 232 (918)
Q Consensus 165 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 232 (918)
+.....+..+...+...|++++|...|++..+. +. +.....+..+...|...|++++|+..|+++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 112345555666666666776666666665543 11 112345666777777777777777777776543
Q ss_pred --CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCccH-------hhHHHHHHHHHhcCCHHHHHHH
Q 043758 233 --GCEPD-SYTCNTLIHGFFKMGLFDKGWVLYSQMSDW-------GFQPNM-------VTDLIMISNYCREGEVDAALML 295 (918)
Q Consensus 233 --~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~ 295 (918)
+..|+ ..++..+..++...|++++|...++++.+. ...+.. ..+..+...+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 11222 235666666777777777777777776642 111111 1122222233334445555555
Q ss_pred HHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 296 LNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
++...... +.+..++..+..+|...|++++|...|++..+
T Consensus 267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555432 33456677788888888888888888877754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.4e-09 Score=110.89 Aligned_cols=268 Identities=13% Similarity=-0.003 Sum_probs=188.3
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCChh----hHHHHHHHhhchhcHHHHHHHHHHHhhcCCC-Cc----chhHHHHH
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPIKL----ACVSILRGLFAEEKFLEAFDYFIKICNAGVD-LN----CWSYNVLI 139 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~ 139 (918)
..++...|++++|...+++++...+..+.. +++.+...+...|++++|...+++....... .+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444577888999999998888765433322 5667778888999999999999987753211 11 12356777
Q ss_pred HHHHcCCChhHHHHHHHHHHhcC---CCC--C-CcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCC----ChhhHHHH
Q 043758 140 DGLCYKGFLDEVLEVVNIMRKKK---GLV--P-ALHPYKSLFYALCKNIRTVEAESFAREMESQGFYV----DKLMYTSL 209 (918)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~---~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l 209 (918)
..+...|++++|.+.++...+.. +.. | ....+..+...+...|++++|...+++........ ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 88889999999999999876521 221 2 13355667778889999999999999887643221 13467788
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCCCh-hhHH-----HHHHHHHhcCChhHHHHHHHHHHhCCCCc---cHhhHHHHH
Q 043758 210 INGYCSNRNMKMAMRLFFRMLKTGCEPDS-YTCN-----TLIHGFFKMGLFDKGWVLYSQMSDWGFQP---NMVTDLIMI 280 (918)
Q Consensus 210 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~ 280 (918)
...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ....+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 88899999999999999988753212221 1222 22334678999999999999887653211 123456778
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC----CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 281 SNYCREGEVDAALMLLNSKVSS----NLAPSV-HCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
..+...|++++|...++..... +.+++. .++..+..++...|++++|...|++...
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8899999999999999876542 211122 2556667788889999999999988765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.2e-09 Score=112.03 Aligned_cols=315 Identities=12% Similarity=0.020 Sum_probs=202.1
Q ss_pred CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHC--CC--CCcHHHHHHHHHHH----Hc-CC------ChHHHHHHHH
Q 043758 502 KPSVAIYDAIIGHL--CKEKRILEAEDMFKRMLKA--GI--DPDEVFFTTMINGY----LQ-NR------KPIEACQLFE 564 (918)
Q Consensus 502 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~----~~-~~------~~~~A~~~~~ 564 (918)
.|+..+-+.+-..| ...+++++|..+++++.+. .+ .++...|-.++..- .. .. ......+.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34555555666666 7789999999999988652 12 22333334333321 11 11 1112225555
Q ss_pred HHHhCCCCCCc----hhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043758 565 KMKENSVQPGS----YPYTALISGLVKKGMVDLGCMYLDRMLADG-FVP----NVVLYTALINHFLRAGEFEFASRLENL 635 (918)
Q Consensus 565 ~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 635 (918)
.+.....+.+. ..+......+...|++++|...|+...+.- ..+ ...++..+..+|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 54332101010 112223444567888999998888887651 012 245677788888888888888888887
Q ss_pred HHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHH
Q 043758 636 MVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLK 715 (918)
Q Consensus 636 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 715 (918)
..+. +.
T Consensus 167 al~~-------------------------------------------------------------------------~~- 172 (378)
T 3q15_A 167 ALDI-------------------------------------------------------------------------YQ- 172 (378)
T ss_dssp HHHH-------------------------------------------------------------------------HH-
T ss_pred HHHH-------------------------------------------------------------------------HH-
Confidence 6531 00
Q ss_pred HHhcC-CCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 716 VKDIE-FMP-NLYLYNDIFLLLCGVGRMDDAYDHFQMMKRE----GLRP-NQVTFCILINGHIAAGEIDQAIGLFNQMNA 788 (918)
Q Consensus 716 ~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 788 (918)
+.+ ..+ ...+++.+..+|...|++++|...+++..+. +-.+ ...++..+..+|...|++++|+..+++..+
T Consensus 173 --~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 173 --NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp --TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 000 011 2457788889999999999999999887653 1111 123677788899999999999999999887
Q ss_pred C----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHccCC---hhhHHHHHHHHH
Q 043758 789 D----GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGF---VPK-KATYEHLLECFCANCL---SIPAFNMFKEMI 857 (918)
Q Consensus 789 ~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~ 857 (918)
. +.+....++..+..+|...|++++|...+++..+..- .|. ...+..+...+...++ ..+|+..+++..
T Consensus 251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~ 330 (378)
T 3q15_A 251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN 330 (378)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT
T ss_pred HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC
Confidence 2 2222367788899999999999999999999875311 122 2345555556677777 777777777521
Q ss_pred hCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 858 VHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 858 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
..+.....+..++..|...|++++|...+++..+.
T Consensus 331 --~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 331 --LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11333567788999999999999999999988653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-09 Score=102.31 Aligned_cols=167 Identities=13% Similarity=-0.034 Sum_probs=142.9
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043758 725 LYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKG 804 (918)
Q Consensus 725 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 804 (918)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567778888999999999999999887642 3356678888889999999999999999998852 3367888899999
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 043758 805 LCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEA 884 (918)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 884 (918)
+...|++++|...++++.+. .+.+...+..+..++...|++++|...++++.... |.+...+..++.++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998864 34567788888889999999999999999998876 77888999999999999999999
Q ss_pred HHHHHHHHhCC
Q 043758 885 QIVLDVMHKRG 895 (918)
Q Consensus 885 ~~~~~~~~~~~ 895 (918)
...++++.+..
T Consensus 164 ~~~~~~~~~~~ 174 (186)
T 3as5_A 164 LPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 99999988765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.1e-10 Score=126.02 Aligned_cols=164 Identities=9% Similarity=0.051 Sum_probs=144.8
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 043758 724 NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTL 801 (918)
Q Consensus 724 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 801 (918)
+...|+.+...|.+.|++++|+..|++.++. .|+ ...+..+..+|.+.|++++|++.|+++++. .| +...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 5688999999999999999999999999884 455 558888999999999999999999999885 44 46889999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 043758 802 LKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKH 880 (918)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (918)
..+|...|++++|++.+++..+ +.| +...|..+..+|...|++++|+..++++++.. |.+..++..++.+|...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhccc
Confidence 9999999999999999999986 455 56688999999999999999999999999887 7889999999999999999
Q ss_pred HHHHHHHHHHHHhC
Q 043758 881 FHEAQIVLDVMHKR 894 (918)
Q Consensus 881 ~~~A~~~~~~~~~~ 894 (918)
+++|.+.++++.+.
T Consensus 161 ~~~A~~~~~kal~l 174 (723)
T 4gyw_A 161 WTDYDERMKKLVSI 174 (723)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988887653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-08 Score=106.89 Aligned_cols=91 Identities=13% Similarity=-0.005 Sum_probs=55.3
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCch----hHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHH
Q 043758 548 NGYLQNRKPIEACQLFEKMKENSVQPGSY----PYTALISGLVKKGMVDLGCMYLDRMLAD----GFV-PNVVLYTALIN 618 (918)
Q Consensus 548 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~ 618 (918)
..+...|++++|...+++........+.. .+..+...+...|++++|...+++..+. +.. ....++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34455667777777776666543111111 3444555666777777777777776543 110 01233566777
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 043758 619 HFLRAGEFEFASRLENLMVT 638 (918)
Q Consensus 619 ~~~~~g~~~~a~~~~~~~~~ 638 (918)
.+...|++++|...+++..+
T Consensus 102 ~~~~~G~~~~A~~~~~~al~ 121 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQ 121 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 78888999999888888764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=6.5e-10 Score=125.11 Aligned_cols=166 Identities=13% Similarity=-0.038 Sum_probs=105.5
Q ss_pred CchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 043758 60 QSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLI 139 (918)
Q Consensus 60 ~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 139 (918)
+..+|+..++.++.+.|++++|+..|+++++.++. +..+|+.+..+|.+.|++++|+..|+++++.. +.+..+|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 33444444555556666666666666666666543 45567777777777777777777777776664 44556677777
Q ss_pred HHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCh
Q 043758 140 DGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNM 219 (918)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 219 (918)
.++...|++++|++.|++..+. .+.+...|+.+..+|.+.|++++|...|++..+..+. +...|..+..+|...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 7777777777777777776651 1223456666666666667777777777666665433 556666666666666666
Q ss_pred HHHHHHHHHHH
Q 043758 220 KMAMRLFFRML 230 (918)
Q Consensus 220 ~~A~~~~~~m~ 230 (918)
++|.+.+++..
T Consensus 162 ~~A~~~~~kal 172 (723)
T 4gyw_A 162 TDYDERMKKLV 172 (723)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4.7e-10 Score=113.19 Aligned_cols=165 Identities=13% Similarity=0.013 Sum_probs=119.4
Q ss_pred HcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhc------C-CC
Q 043758 57 KFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNA------G-VD 129 (918)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~ 129 (918)
..|++++|+.+| ++|++++......+.+....++..+...|...|++++|+..|+++.+. + .+
T Consensus 13 ~~~~~~~A~~~~----------~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (283)
T 3edt_B 13 GLVPRGSAVPLC----------KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP 82 (283)
T ss_dssp CCSCSSSHHHHH----------HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred CCCCHHHHHHHH----------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch
Confidence 456677777775 566777777665443335668889999999999999999999988754 2 12
Q ss_pred CcchhHHHHHHHHHcCCChhHHHHHHHHHHhcC-----C-CCCCcccHHHHHHHHhccCchHHHHHHHHHHHhC------
Q 043758 130 LNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKK-----G-LVPALHPYKSLFYALCKNIRTVEAESFAREMESQ------ 197 (918)
Q Consensus 130 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------ 197 (918)
....++..+...+...|++++|++.|+++.+.. . .+.....+..+...+...|++++|...|++..+.
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 345678889999999999999999999887620 1 1223456677777788888888888888877654
Q ss_pred CCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 043758 198 GFYV-DKLMYTSLINGYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 198 ~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (918)
+..| ...++..+...|...|++++|...|++..+
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 245677777888888888888888887764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3e-09 Score=99.19 Aligned_cols=161 Identities=12% Similarity=0.051 Sum_probs=89.4
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 043758 172 KSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKM 251 (918)
Q Consensus 172 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 251 (918)
..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 33444445555555555555555443222 44455555555555666666666666555442 22344555555555566
Q ss_pred CChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 043758 252 GLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELY 331 (918)
Q Consensus 252 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 331 (918)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...... +.+..++..+...+...|++++|...+
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666655543 3345555556666666666666666666655543 334455666666666666666666666
Q ss_pred HHHHh
Q 043758 332 KKMLA 336 (918)
Q Consensus 332 ~~~~~ 336 (918)
+++.+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.2e-09 Score=102.85 Aligned_cols=190 Identities=8% Similarity=-0.032 Sum_probs=83.2
Q ss_pred hhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc-HHhHHHHHHHHH
Q 043758 693 KSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN-QVTFCILINGHI 771 (918)
Q Consensus 693 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~ 771 (918)
+......+...|++++|...|++..+...+++...+..+..++...|++++|+..+++..+. .|+ ...+..+..+|.
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHH
Confidence 33344444445555555555554444332234444444444444555555555555544442 222 223444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 043758 772 AAGEIDQAIGLFNQMNADGCVPDK-------TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK---KATYEHLLECFC 841 (918)
Q Consensus 772 ~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 841 (918)
..|++++|+..+++..+... .+. ..|..+...+...|++++|+..+++..+ ..|+ ...+..+..++.
T Consensus 88 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHH
Confidence 55555555555554444210 112 2344444444444555555555544443 2333 123333333333
Q ss_pred ccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 842 ANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 842 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
..| ...++++...+ +.+...+ ........+.+++|...+++..+..
T Consensus 165 ~~~-----~~~~~~a~~~~-~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 165 NNG-----ADVLRKATPLA-SSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHH-----HHHHHHHGGGT-TTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-----HHHHHHHHhcc-cCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 222 12223332222 1121111 1222233344499999999998876
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.9e-09 Score=112.33 Aligned_cols=232 Identities=11% Similarity=-0.011 Sum_probs=148.2
Q ss_pred HHHHHhhchhcHHHHHHHHHHHhhcCC--C---CcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC-----cccH
Q 043758 102 SILRGLFAEEKFLEAFDYFIKICNAGV--D---LNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA-----LHPY 171 (918)
Q Consensus 102 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~ 171 (918)
.....+...|++++|+..|+++..... + ....++..+...+...|+++.|+..+++..+...-.++ ..++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677888888888887764321 1 12346777777888888888888888776642111111 3456
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHhcCCChHHHHHHHHHHHh-----cCCCCChhhH
Q 043758 172 KSLFYALCKNIRTVEAESFAREMESQ----GFY-VDKLMYTSLINGYCSNRNMKMAMRLFFRMLK-----TGCEPDSYTC 241 (918)
Q Consensus 172 ~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~ 241 (918)
+.+..+|...|++++|...|++..+. +.. ....+++.+...|...|++++|+..|++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 66777778888888888887776552 111 0124567777788888888888888887765 31 2224566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC----CccHhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCCCcchHHHH
Q 043758 242 NTLIHGFFKMGLFDKGWVLYSQMSDWGF----QPNMVTDLIMISNYCREGE---VDAALMLLNSKVSSNLAPSVHCYTVL 314 (918)
Q Consensus 242 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l 314 (918)
..+...+.+.|++++|...+++..+... +.....+..+...|...|+ +.+|...++.... .+.....+..+
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~l 342 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHH
Confidence 7777778888888888888887765421 1223345556666667777 6666666665321 11123345667
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 043758 315 IDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~~ 336 (918)
...|...|++++|...|++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7778888888888888877654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.8e-09 Score=100.09 Aligned_cols=195 Identities=10% Similarity=-0.052 Sum_probs=124.3
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
++..+......+...|++++|+..|+++.+...+++...+..+..++...|++++|++.|+...+ . .+.+...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK-K-NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-T-TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH-h-CcchHHHHHHHH
Confidence 45566677777777777777777777777665335666666677777777777777777777765 1 122345666677
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCC---hhhHHHHH
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDK-------LMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPD---SYTCNTLI 245 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll 245 (918)
.++...|++++|...|++..+..+. +. ..|..+...+...|++++|+..|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 7777777777777777777765433 34 34667777777788888888888887765 444 34555555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 043758 246 HGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN 303 (918)
Q Consensus 246 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 303 (918)
.++... +..+++.+...+ ..+...+.... ....+.+++|...|+...+..
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 555433 334455555443 22333343332 234466788888888877754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-09 Score=108.58 Aligned_cols=170 Identities=15% Similarity=0.076 Sum_probs=89.3
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHc------CCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC
Q 043758 725 LYLYNDIFLLLCGVGRMDDAYDHFQMMKRE------GLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNAD------GC 791 (918)
Q Consensus 725 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~ 791 (918)
..++..+...|...|++++|+..+++..+. +-.|. ..++..+..+|...|++++|+..++++.+. ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555555555555555555555554432 11121 224444555555555555555555554432 00
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhC----
Q 043758 792 VP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKR------GFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVH---- 859 (918)
Q Consensus 792 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 859 (918)
.| ....+..+...|...|++++|...+++..+. +-.| ...++..+..++.+.|++++|...+++++..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 11 2244444555555555555555555554432 0012 1223444444555555555555555554432
Q ss_pred --------------------------------------------CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 860 --------------------------------------------DHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 860 --------------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
..+....++..++.+|...|++++|...+++..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11333567889999999999999999999988764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-07 Score=93.06 Aligned_cols=246 Identities=10% Similarity=-0.036 Sum_probs=174.4
Q ss_pred chhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh--cHHHHHHHHHHHhhcCCCCcchhHHHH
Q 043758 61 SQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEE--KFLEAFDYFIKICNAGVDLNCWSYNVL 138 (918)
Q Consensus 61 ~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l 138 (918)
+.++...|...+.+....++|+.+++.++..++. +..+|+....++...| ++++++.+++.+.... +-+..+|+..
T Consensus 32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R 109 (306)
T 3dra_A 32 YKQIMGLLLALMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYR 109 (306)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHH
Confidence 3455555555555556667899999999998865 6678998888888888 9999999999999876 5577778777
Q ss_pred HHHH----HcC---CChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchH--HHHHHHHHHHhCCCCCChhhHHHH
Q 043758 139 IDGL----CYK---GFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTV--EAESFAREMESQGFYVDKLMYTSL 209 (918)
Q Consensus 139 ~~~~----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l 209 (918)
...+ ... +++++++++++.+.+. .+-+...|+...-++.+.|.++ ++...++.+.+..+. |...|+-.
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R 186 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHR 186 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 6666 555 7888999999998872 3445667776666677777777 888888888887665 77777766
Q ss_pred HHHHhcCCC------hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh-HHHHHHHHHHhCC--CCccHhhHHHHH
Q 043758 210 INGYCSNRN------MKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFD-KGWVLYSQMSDWG--FQPNMVTDLIMI 280 (918)
Q Consensus 210 i~~~~~~g~------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~ 280 (918)
.......+. ++++++.++++.... +-|...|+.+...+.+.|... ....+..++.+.+ -+.+...+..+.
T Consensus 187 ~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la 265 (306)
T 3dra_A 187 FFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA 265 (306)
T ss_dssp HHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred HHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 666666665 778888888887764 345667777777777777643 3455666555432 123556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC-CCCCCcchHHH
Q 043758 281 SNYCREGEVDAALMLLNSKVSS-NLAPSVHCYTV 313 (918)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ 313 (918)
..|.+.|+.++|.++++.+.+. + |.....|+.
T Consensus 266 ~~~~~~~~~~~A~~~~~~l~~~~D-pir~~yW~~ 298 (306)
T 3dra_A 266 KIYTQQKKYNESRTVYDLLKSKYN-PIRSNFWDY 298 (306)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTC-GGGHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHhccC-hHHHHHHHH
Confidence 7777778888888888777652 3 333444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.91 E-value=8.6e-08 Score=93.64 Aligned_cols=240 Identities=12% Similarity=0.009 Sum_probs=147.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
...|.+..++.- +.+..+........-+.++|...|++... ....|....+..+...+ . ++ |+
T Consensus 24 fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~-~~---a~ 86 (310)
T 3mv2_B 24 YYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-D-TK---NI 86 (310)
T ss_dssp HTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-T-TT---CC
T ss_pred HHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-c-cc---HH
Confidence 456777776663 22222121222333455777777766531 11123333333333333 2 22 67
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGF-YVDKLMYTSLINGYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 231 (918)
..|+++.. .+ .++...+..+..++...|++++|.+++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 87 ~~l~~l~~-~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 87 EELENLLK-DK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHTTT-TS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777765 22 34444555677778888888888888888877654 12566777888888888888888888888877
Q ss_pred cCCCC-----ChhhHHHHHHHHH--hcC--ChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 232 TGCEP-----DSYTCNTLIHGFF--KMG--LFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 232 ~~~~p-----~~~~~~~ll~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
. .| +..+...+..+++ ..| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|++.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 55 2455555555532 223 788888888888665 444333344455788888888888888866542
Q ss_pred C---------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 303 N---------LAPSVHCYTVLIDALYKHNRLMEVDELYKKMLAN 337 (918)
Q Consensus 303 ~---------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (918)
. -+.+..+...+|......|+ +|.+++.++.+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 0 03455666555555555676 778888888774
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-08 Score=101.26 Aligned_cols=159 Identities=7% Similarity=-0.132 Sum_probs=87.2
Q ss_pred HhcCChHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCC-c----chhHHHHHHHH
Q 043758 73 VALGNIEDALRHFDRLISK----NIVP-IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDL-N----CWSYNVLIDGL 142 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~ 142 (918)
...|++++|...|.++.+. +..+ ...+|+.+..+|...|++++|+..|++..+..... + ..+++.+...|
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~ 127 (292)
T 1qqe_A 48 RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEIL 127 (292)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5566666666666665543 2111 14578888888888899999988888876532110 1 23566666666
Q ss_pred HcC-CChhHHHHHHHHHHhcCCCCCC----cccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChh------hHHHHHH
Q 043758 143 CYK-GFLDEVLEVVNIMRKKKGLVPA----LHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKL------MYTSLIN 211 (918)
Q Consensus 143 ~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~li~ 211 (918)
... |++++|++.|++..+...-..+ ..+++.+...+.+.|++++|...|++..+..+..... .|..+..
T Consensus 128 ~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 207 (292)
T 1qqe_A 128 ENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGL 207 (292)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Confidence 664 7777777777766541100000 1234445555555555555555555555543221110 2344444
Q ss_pred HHhcCCChHHHHHHHHHHHh
Q 043758 212 GYCSNRNMKMAMRLFFRMLK 231 (918)
Q Consensus 212 ~~~~~g~~~~A~~~~~~m~~ 231 (918)
++...|++++|+..|++..+
T Consensus 208 ~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 208 CQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.9e-08 Score=96.08 Aligned_cols=178 Identities=10% Similarity=0.058 Sum_probs=85.7
Q ss_pred hhhhhhHhcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCC--CCcchhHHHHHHHH
Q 043758 67 LYQNDFVALGNIEDALRHFDRLISKNIVPI--KLACVSILRGLFAEEKFLEAFDYFIKICNAGV--DLNCWSYNVLIDGL 142 (918)
Q Consensus 67 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~ 142 (918)
..+..+.+.|++++|...|+.+++..+... ..++..++.+|...|++++|+..|+++.+... +....++..+..++
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~ 99 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCY 99 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Confidence 334444555666666666666555443210 34555555555666666666666665555421 11123444455555
Q ss_pred Hc--------CCChhHHHHHHHHHHhcCCCCCCc-ccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 043758 143 CY--------KGFLDEVLEVVNIMRKKKGLVPAL-HPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGY 213 (918)
Q Consensus 143 ~~--------~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 213 (918)
.. .|++++|+..|+.+.+. .|+. .....+.. +..+... ....+..+...|
T Consensus 100 ~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~la~~~ 158 (261)
T 3qky_A 100 YKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQK--------------IRELRAK----LARKQYEAARLY 158 (261)
T ss_dssp HHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHH--------------HHHHHHH----HHHHHHHHHHHH
T ss_pred HHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHH--------------HHHHHHH----HHHHHHHHHHHH
Confidence 55 55555555555555541 1221 11111100 0000000 011134555666
Q ss_pred hcCCChHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhc----------CChhHHHHHHHHHHhC
Q 043758 214 CSNRNMKMAMRLFFRMLKTGCEPD----SYTCNTLIHGFFKM----------GLFDKGWVLYSQMSDW 267 (918)
Q Consensus 214 ~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~ 267 (918)
...|++++|+..|+++.+. .|+ ...+..+..++... |++++|...++.+.+.
T Consensus 159 ~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6677777777777776654 232 22445555555544 5566666666666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=3.4e-08 Score=99.47 Aligned_cols=54 Identities=13% Similarity=0.026 Sum_probs=28.5
Q ss_pred hhchhcHHHHHHHHHHHhhc----CCCC-cchhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 107 LFAEEKFLEAFDYFIKICNA----GVDL-NCWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 107 ~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
|...|++++|+..|++..+. +-++ ...+|+.+..+|...|++++|+..|++..+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 105 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44556666666666555432 1111 123555566666666666666666655544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.9e-08 Score=85.07 Aligned_cols=130 Identities=12% Similarity=0.094 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 043758 763 FCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCA 842 (918)
Q Consensus 763 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 842 (918)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4445556666666666666666665542 1244556666666666667777777666665431 2344556666666777
Q ss_pred cCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 843 NCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 843 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.|++++|...++++.... |.+...+..++.+|...|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 777777777777766654 5566677777777777777777777777776543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.87 E-value=3.9e-07 Score=89.02 Aligned_cols=59 Identities=8% Similarity=0.079 Sum_probs=25.4
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 730 DIFLLLCGVGRMDDAYDHFQMMKREGLRP-NQVTFCILINGHIAAGEIDQAIGLFNQMNA 788 (918)
Q Consensus 730 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 788 (918)
.+..++...|++++|++++++.+..+-.+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444455555555444443322101 222333444444444555555555544444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-08 Score=94.40 Aligned_cols=87 Identities=11% Similarity=0.114 Sum_probs=47.3
Q ss_pred hHhcCChHHHHHHHHHHHhCCCCCChhhHHH----------------HHHHhhchhcHHHHHHHHHHHhhcCCCCcchhH
Q 043758 72 FVALGNIEDALRHFDRLISKNIVPIKLACVS----------------ILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSY 135 (918)
Q Consensus 72 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 135 (918)
+...|++++|...|+.+++.++. ++.+|.. +..+|.+.|++++|+..|++.++.. |.+...+
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 91 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCL 91 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHH
Confidence 36677777777777777765532 2334444 4555555555555555555555443 3344455
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 136 NVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
..+..++...|++++|++.|+++.+
T Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555555544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.2e-08 Score=96.52 Aligned_cols=167 Identities=10% Similarity=0.011 Sum_probs=107.0
Q ss_pred ccHHHHHHHHHHcCCchhHHhhhhh--------------------hhHhcCChHHHHHHHHHHHhCCCC-C-ChhhHHHH
Q 043758 46 GSYSALMKKLIKFGQSQSALLLYQN--------------------DFVALGNIEDALRHFDRLISKNIV-P-IKLACVSI 103 (918)
Q Consensus 46 ~~~~~l~~~l~~~~~~~~a~~~~~~--------------------~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l 103 (918)
..+..+...+.+.|++++|+..|.. ++.+.|++++|...|+++++..+. | ...++..+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 3344445555555555555555544 448999999999999999987642 2 24577888
Q ss_pred HHHhhc--------hhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 104 LRGLFA--------EEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 104 ~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
..++.. .|++++|+..|+++++.. +.+......+.... .+-.... ..+..+.
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~----------~~~~~~~---------~~~~~la 155 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIR----------ELRAKLA---------RKQYEAA 155 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHH----------HHHHHHH---------HHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHH----------HHHHHHH---------HHHHHHH
Confidence 888988 999999999999999875 33333332221110 0001111 1134456
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHhcC----------CChHHHHHHHHHHHhc
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYV--DKLMYTSLINGYCSN----------RNMKMAMRLFFRMLKT 232 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 232 (918)
.+|.+.|++++|...|+++.+..+.. ....+..+..+|... |++++|...|+++.+.
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 66777777777777777777653321 234566666666654 7778888888887765
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.83 E-value=9.4e-08 Score=83.23 Aligned_cols=128 Identities=19% Similarity=0.292 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHh
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCR 285 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (918)
|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|..+++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3444444444455555555555444332 1233344444444444555555555555544432 2234444445555555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 286 EGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 286 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
.|++++|...++.+.... +.+..++..+...+...|++++|...|+++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555544432 22344445555555555555555555555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.5e-08 Score=92.12 Aligned_cols=180 Identities=12% Similarity=-0.062 Sum_probs=84.7
Q ss_pred hhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 043758 98 LACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYA 177 (918)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~ 177 (918)
..+...+..+...|++++|+..|+++.... |.+...|... ...... .........+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~~~---------------~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDKNS---------------EISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCTTS---------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcchh---------------hhhHHHHHHHHHH
Confidence 345556667788899999999999988764 3334444440 000000 0000111224444
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--hh
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGL--FD 255 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~ 255 (918)
+.+.|++++|...|++..+..+. +...|..+..+|...|++++|+..|++..+.. +.+..++..+..++...|. ..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH
Confidence 55555555555555555554332 44555555555555555555555555555442 1223344444444433332 22
Q ss_pred HHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 256 KGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
.+...++.... ..|....+..+..++...|++++|...|++..+.
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 23333333321 1222222233334444455555555555555543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-07 Score=88.72 Aligned_cols=176 Identities=10% Similarity=-0.074 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCC----ChhHHHHHH
Q 043758 80 DALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKG----FLDEVLEVV 155 (918)
Q Consensus 80 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 155 (918)
+|.++|....+.+ ++.++..+...|...+++++|+.+|++..+.+ +...+..+...|.. + +.++|+++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666777777765 66677788888888888888888888887765 45567777777766 5 777888888
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHhc----cCchHHHHHHHHHHHhCCCC-CChhhHHHHHHHHhc----CCChHHHHHHH
Q 043758 156 NIMRKKKGLVPALHPYKSLFYALCK----NIRTVEAESFAREMESQGFY-VDKLMYTSLINGYCS----NRNMKMAMRLF 226 (918)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~ 226 (918)
+...+ . .+...+..|..+|.. .+++++|...|++..+.+.. .++..+..|...|.. .+++++|+.+|
T Consensus 77 ~~A~~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVE-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHH-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHH-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 77765 2 245556666666665 66777777777777766431 015666667766766 66777777777
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCC
Q 043758 227 FRMLKTGCEPDSYTCNTLIHGFFKM-G-----LFDKGWVLYSQMSDWG 268 (918)
Q Consensus 227 ~~m~~~~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~ 268 (918)
++..+. ..+...+..|...|... | ++++|..+|+...+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777654 22334555555555432 2 6677777777766655
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.1e-07 Score=89.45 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=51.1
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhCCCCCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 835 HLLECFCANCLSIPAFNMFKEMIVHDHVPCL---SNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 835 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.+...+.+.|++++|...++++++.. |.++ .++..++.+|.+.|++++|.+.++.+...+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 34557889999999999999998764 4443 679999999999999999999999998876
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-08 Score=89.68 Aligned_cols=142 Identities=10% Similarity=-0.067 Sum_probs=108.3
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC
Q 043758 732 FLLLCGVGRMDDAYDHFQMMKREGLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTLLKGLCQAG 809 (918)
Q Consensus 732 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 809 (918)
...+...|++++|+..++..... .|+ ...+..+...|...|++++|++.|++.++. .| +...|..+..+|...|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 44555667888888888877652 343 335566788888999999999999988885 33 5688888888999999
Q ss_pred ChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHH-HHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 043758 810 RLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNM-FKEMIVHDHVPCLSNCNWLLNILCQEKH 880 (918)
Q Consensus 810 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (918)
++++|+..+++..+ +.| +...+..+..+|.+.|++++|.+. ++++++.. |.++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999999988886 455 566788888888889988876654 58888776 7788888888888888775
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-06 Score=86.59 Aligned_cols=249 Identities=9% Similarity=0.012 Sum_probs=183.9
Q ss_pred hhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcC--ChHHHHH
Q 043758 6 RGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALG--NIEDALR 83 (918)
Q Consensus 6 ~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g--~~~~A~~ 83 (918)
...+.++...|..+.+...-..+|+...+.+ +..++.+-.|...-+.++...| ++++++.
T Consensus 29 ~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~------------------L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~ 90 (306)
T 3dra_A 29 DEDYKQIMGLLLALMKAEEYSERALHITELG------------------INELASHYTIWIYRFNILKNLPNRNLYDELD 90 (306)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHTCTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH------------------HHHCcHHHHHHHHHHHHHHHcccccHHHHHH
Confidence 3456677777777776666655566554444 3444444445444444555556 8999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHh----hch---hcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChh--HHHHH
Q 043758 84 HFDRLISKNIVPIKLACVSILRGL----FAE---EKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLD--EVLEV 154 (918)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~ 154 (918)
+++.++..++. +..+|+....++ ... +++++++.+++.+.+.. +-|..+|+...-++.+.|.++ ++++.
T Consensus 91 ~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 91 WCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp HHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 99999998876 666888666665 444 78999999999999887 668889998888888899988 99999
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHhccCc------hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHH-HHHHHH
Q 043758 155 VNIMRKKKGLVPALHPYKSLFYALCKNIR------TVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKM-AMRLFF 227 (918)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~ 227 (918)
++.+++. -+-|...|+....++...++ ++++...++.+....+. |...|+-+-..+.+.|+... +..+..
T Consensus 169 ~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 169 VDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 9999972 34566677776666666666 89999999999988766 89999999888888887544 555666
Q ss_pred HHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCccHhhHHH
Q 043758 228 RMLKTG--CEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSD-WGFQPNMVTDLI 278 (918)
Q Consensus 228 ~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~ 278 (918)
++.+.+ -..+...+..+..++.+.|+.++|.++++.+.+ .+ +.....|+.
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D-pir~~yW~~ 298 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN-PIRSNFWDY 298 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-GGGHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC-hHHHHHHHH
Confidence 665432 134667888899999999999999999999986 33 333444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-07 Score=88.87 Aligned_cols=176 Identities=7% Similarity=-0.022 Sum_probs=114.4
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcch---hHHHHHHHHH
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPI--KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCW---SYNVLIDGLC 143 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~ 143 (918)
+..+...|++++|...|+.+++..+... ..++..++.++.+.|++++|+..|+++.+.. |.+.. .+..+..++.
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g~~~~ 89 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRGLTNM 89 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHHHHHH
Confidence 3445778888888888998887654321 3577788889999999999999999988765 22222 4444554444
Q ss_pred c------------------CCChhHHHHHHHHHHhcCCCCCCc-ccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChh
Q 043758 144 Y------------------KGFLDEVLEVVNIMRKKKGLVPAL-HPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKL 204 (918)
Q Consensus 144 ~------------------~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 204 (918)
. .|+.++|+..|+.+.+ ..|+. ..+.+..... .+...+ ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~----------~~~~~~--------~~ 148 (225)
T 2yhc_A 90 ALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLV----------FLKDRL--------AK 148 (225)
T ss_dssp HHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHH----------HHHHHH--------HH
T ss_pred hhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHH----------HHHHHH--------HH
Confidence 3 4566666666666665 22322 2221111100 000000 01
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDS----YTCNTLIHGFFKMGLFDKGWVLYSQMSDWG 268 (918)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 268 (918)
....+...|...|++++|+..|+++.+. .|+. ..+..+..++.+.|++++|.+.++.+...+
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1234567788899999999999998876 3442 357778888899999999999999887764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.78 E-value=8.3e-06 Score=87.96 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=63.3
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHH
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDIL 493 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 493 (918)
..|...+....+.+..+.|..+|... .. |. .++...+. ++.. + +...++.+.|..+|
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~---~~-~~~~v~i~-~A~l---E--------------~~~~~d~~~ar~if 343 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN---EG-VGPHVFIY-CAFI---E--------------YYATGSRATPYNIF 343 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT---SC-CCHHHHHH-HHHH---H--------------HHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC---CC-CChHHHHH-HHHH---H--------------HHHCCChHHHHHHH
Confidence 45666666666667788888888777 21 22 12221111 0000 0 00112456666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 043758 494 DQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMK 567 (918)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 567 (918)
+...+.-+ .++..+...+....+.|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.
T Consensus 344 e~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 344 SSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66655422 234444555555566666666666666652 234445555544444555555555555544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.77 E-value=7e-08 Score=109.63 Aligned_cols=174 Identities=10% Similarity=-0.044 Sum_probs=135.5
Q ss_pred HcCCChhHHHHHHHHHH--------hcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 043758 143 CYKGFLDEVLEVVNIMR--------KKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYC 214 (918)
Q Consensus 143 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 214 (918)
...|++++|++.++... + ..+.+...+..+..++.+.|++++|...|++..+..+. +...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 67889999999999887 3 12345567778888888999999999999998886554 7788888888999
Q ss_pred cCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHH
Q 043758 215 SNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALM 294 (918)
Q Consensus 215 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 294 (918)
..|++++|+..|++..+.. +-+...|..+..++...|++++ .+.|++..+.+ +.+...+..+..+|.+.|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988763 2245678888888889999999 99999988775 5567788888889999999999999
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHhcCC
Q 043758 295 LLNSKVSSNLAPSVHCYTVLIDALYKHNR 323 (918)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 323 (918)
.|++..+.+ +.+...|..+..++...++
T Consensus 556 ~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 999888765 3345667777777766554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-05 Score=86.05 Aligned_cols=77 Identities=9% Similarity=0.109 Sum_probs=48.4
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 043758 740 RMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFY 819 (918)
Q Consensus 740 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 819 (918)
+.+.|..+|+...+.- +-+...+...++-....|+.+.|..+|+.+.+ ....|...+..-...|+.+.+..+++
T Consensus 335 d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5777777777766542 11222344455555567777777777777621 45667776666666777777777777
Q ss_pred HHH
Q 043758 820 SMH 822 (918)
Q Consensus 820 ~~~ 822 (918)
++.
T Consensus 409 ~~~ 411 (493)
T 2uy1_A 409 QKM 411 (493)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.75 E-value=9.3e-08 Score=87.78 Aligned_cols=163 Identities=12% Similarity=0.044 Sum_probs=116.4
Q ss_pred cHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH-H
Q 043758 170 PYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHG-F 248 (918)
Q Consensus 170 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~ 248 (918)
.+..+...+.+.|++++|...|++..+..+. +...+..+..+|...|++++|+..|++..+. .|+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHH
Confidence 4455666677788888888888877665333 6677888888888888888888888887665 3343332222211 2
Q ss_pred HhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CcchHHHHHHHHHhcCChhHH
Q 043758 249 FKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAP-SVHCYTVLIDALYKHNRLMEV 327 (918)
Q Consensus 249 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a 327 (918)
...+...++...+++..+.. +.+...+..+...+...|++++|...|+.+.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233345778888887764 4467788888888999999999999999888765222 245788888899999999999
Q ss_pred HHHHHHHHh
Q 043758 328 DELYKKMLA 336 (918)
Q Consensus 328 ~~~~~~~~~ 336 (918)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.75 E-value=8.2e-08 Score=109.06 Aligned_cols=174 Identities=7% Similarity=-0.167 Sum_probs=144.1
Q ss_pred hchhcHHHHHHHHHHHh--------hcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHh
Q 043758 108 FAEEKFLEAFDYFIKIC--------NAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALC 179 (918)
Q Consensus 108 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 179 (918)
...|++++|+..++++. +.. +.+...+..+..++...|++++|++.|+++.+. .+.+...+..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 77899999999999998 443 556778999999999999999999999999872 2345678888889999
Q ss_pred ccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 043758 180 KNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWV 259 (918)
Q Consensus 180 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 259 (918)
..|++++|...|++..+..+. +...|..+..+|...|++++ +..|++..+.+ +.+...|..+..++...|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999987654 77889999999999999999 99999998864 3356688999999999999999999
Q ss_pred HHHHHHhCCCCccHhhHHHHHHHHHhcCC
Q 043758 260 LYSQMSDWGFQPNMVTDLIMISNYCREGE 288 (918)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 288 (918)
.|+++.+.+ +.+...+..+..++...++
T Consensus 556 ~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 999998764 3346677777777766554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=6e-08 Score=86.00 Aligned_cols=124 Identities=8% Similarity=-0.158 Sum_probs=61.2
Q ss_pred HHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCc
Q 043758 104 LRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIR 183 (918)
Q Consensus 104 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 183 (918)
...+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++..+. .+.+..+|..+..+|.+.|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 344455566666666665554432 223334445555555566666666666655541 12233444555555555555
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHH-HHHHHh
Q 043758 184 TVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRL-FFRMLK 231 (918)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~ 231 (918)
+++|...|++..+..+. +...|..+...|...|++++|... +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555555555554332 444555555555555555444333 344444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.9e-08 Score=89.12 Aligned_cols=162 Identities=10% Similarity=-0.016 Sum_probs=97.5
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHH-
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYA- 177 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~- 177 (918)
.+......+...|++++|+..|+++.+.. |.+...+..+...+...|++++|+..|+.+.+ ..|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHH
Confidence 44555666677777777777777766554 34556667777777777777777777777655 22222222111111
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhH
Q 043758 178 LCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEP-DSYTCNTLIHGFFKMGLFDK 256 (918)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~ 256 (918)
+...+...+|...+++..+..+. +...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 11212223456667666665433 56677777777777777777777777777653222 23466667777777777777
Q ss_pred HHHHHHHHH
Q 043758 257 GWVLYSQMS 265 (918)
Q Consensus 257 a~~~~~~~~ 265 (918)
|...|++.+
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=94.63 Aligned_cols=163 Identities=12% Similarity=-0.010 Sum_probs=98.6
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHH-H
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKS-L 174 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-l 174 (918)
+...+..+...+...|++++|+..|+++.... +.+...+..+...+.+.|++++|+..++.+.. ..|+...... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHHHH
Confidence 34455566666667777777777777766664 44556666667777777777777777776654 2333322221 1
Q ss_pred HHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhc
Q 043758 175 FYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPD---SYTCNTLIHGFFKM 251 (918)
Q Consensus 175 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~ 251 (918)
...+...++.++|...+++.....+. +...+..+...|...|++++|+..|.++.+.. |+ ...+..++..+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHc
Confidence 22244555666666666666665443 56666666677777777777777777766652 32 34566666666666
Q ss_pred CChhHHHHHHHHHH
Q 043758 252 GLFDKGWVLYSQMS 265 (918)
Q Consensus 252 g~~~~a~~~~~~~~ 265 (918)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 66666666665543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-07 Score=93.43 Aligned_cols=167 Identities=8% Similarity=-0.037 Sum_probs=129.8
Q ss_pred CCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHH-
Q 043758 165 VPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNT- 243 (918)
Q Consensus 165 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~- 243 (918)
+.+...+..+...+.+.|++++|...|++..+..+. +...+..+...|...|++++|...++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 344556667777788889999999999988887554 7778888999999999999999999888765 455443222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--cchHHHHHHHHHhc
Q 043758 244 LIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPS--VHCYTVLIDALYKH 321 (918)
Q Consensus 244 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~ 321 (918)
....+...++.+.|...+++..... +.+...+..+...|...|++++|...|.++.+.. +.+ ...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHc
Confidence 2223667778888888888888775 5667888889999999999999999999988765 222 56788899999999
Q ss_pred CChhHHHHHHHHHHh
Q 043758 322 NRLMEVDELYKKMLA 336 (918)
Q Consensus 322 g~~~~a~~~~~~~~~ 336 (918)
|+.++|...|++...
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999988887653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.71 E-value=9.5e-07 Score=83.73 Aligned_cols=176 Identities=15% Similarity=0.041 Sum_probs=144.2
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcC----CHHHHHHHH
Q 043758 708 TVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAG----EIDQAIGLF 783 (918)
Q Consensus 708 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~ 783 (918)
+|.+.|++..+.| ++..+..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|+..|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3556666666553 77888889999999999999999999998865 45567777777777 6 899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc----cCChhhHHHH
Q 043758 784 NQMNADGCVPDKTVYNTLLKGLCQ----AGRLSHVFSVFYSMHKRGFVPK---KATYEHLLECFCA----NCLSIPAFNM 852 (918)
Q Consensus 784 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~~~~~~A~~~ 852 (918)
++..+.| ++..+..+...|.. .+++++|+..+++..+.| |+ ...+..|...|.. .+++++|...
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9998854 56777888888877 789999999999998643 43 6677788888888 7899999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCCCC
Q 043758 853 FKEMIVHDHVPCLSNCNWLLNILCQE-K-----HFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~ 897 (918)
+++.... +.++.++..|+.+|..- | ++++|...+++..+.|..
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 9999886 45667899999999754 3 999999999999998854
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.7e-06 Score=86.38 Aligned_cols=188 Identities=9% Similarity=-0.071 Sum_probs=144.4
Q ss_pred CchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh-cHHHHHHHHHHHhhcCCCCcchhHHHH
Q 043758 60 QSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEE-KFLEAFDYFIKICNAGVDLNCWSYNVL 138 (918)
Q Consensus 60 ~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l 138 (918)
++.++...+..++.+.+..++|+++++.++..++. +..+|+....++...| .+++++.+++.+.... +-+..+|+..
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR 129 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHR 129 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 45677777777777777888999999999998866 6778998888888888 5999999999999886 5577888888
Q ss_pred HHHHHcC-C-ChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchH--------HHHHHHHHHHhCCCCCChhhHHH
Q 043758 139 IDGLCYK-G-FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTV--------EAESFAREMESQGFYVDKLMYTS 208 (918)
Q Consensus 139 ~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~ 208 (918)
...+.+. + +.++++++++.+.+ ..+-+...|+...-++.+.|.++ ++...++++.+..+. |...|+-
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~ 206 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGW 206 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 8777776 7 88999999999986 23445666766666666666666 888899998887665 7888888
Q ss_pred HHHHHhcCCC-------hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 043758 209 LINGYCSNRN-------MKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGL 253 (918)
Q Consensus 209 li~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 253 (918)
....+.+.+. ++++++.++++.... +-|...|+.+-..+.+.|.
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 8877777775 678888888887763 3355677766655555554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-07 Score=104.29 Aligned_cols=154 Identities=8% Similarity=-0.161 Sum_probs=107.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHH
Q 043758 75 LGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEV 154 (918)
Q Consensus 75 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 154 (918)
.|++++|...|+++.+.++. +..+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46778888888888876644 56788888888999999999999999988775 45677888888888889999999999
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC---CChHHHHHHHHHHHh
Q 043758 155 VNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSN---RNMKMAMRLFFRMLK 231 (918)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 231 (918)
|++..+. .+.+...+..+..++.+.|++++|...|++..+..+. +...+..+...+... |++++|.+.+++..+
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9888872 2334567777888888888888888888888776443 667788888888888 888888888888877
Q ss_pred cC
Q 043758 232 TG 233 (918)
Q Consensus 232 ~~ 233 (918)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 63
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.65 E-value=8.4e-07 Score=89.96 Aligned_cols=129 Identities=14% Similarity=-0.025 Sum_probs=75.2
Q ss_pred hhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhh---hHhcCChHH
Q 043758 4 INRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQND---FVALGNIED 80 (918)
Q Consensus 4 ~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~---~~~~g~~~~ 80 (918)
+.+|++.+|..+++++.+..+.. + .++ .+++++|...|.++ +...|++++
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~-----~------~~~----------------~~~~~~A~~~~~~a~~~~~~~g~~~~ 54 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTS-----F------MKW----------------KPDYDSAASEYAKAAVAFKNAKQLEQ 54 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCC-----S------SSC----------------SCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHHHcccc-----c------cCC----------------CCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 46899999999999986654420 0 000 24455555555443 356677777
Q ss_pred HHHHHHHHHhCCC---CC--ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCC---CC--cchhHHHHHHHHHcCCChhH
Q 043758 81 ALRHFDRLISKNI---VP--IKLACVSILRGLFAEEKFLEAFDYFIKICNAGV---DL--NCWSYNVLIDGLCYKGFLDE 150 (918)
Q Consensus 81 A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~ 150 (918)
|...|.++.+... .+ ...+|+.+..+|...|++++|+..|++..+... .+ -..+++.+...|.. |++++
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 7777776654321 01 133666777777777888888777777654311 11 12345555555655 66666
Q ss_pred HHHHHHHHHh
Q 043758 151 VLEVVNIMRK 160 (918)
Q Consensus 151 A~~~~~~~~~ 160 (918)
|++.|++..+
T Consensus 134 A~~~~~~Al~ 143 (307)
T 2ifu_A 134 AVHLYQQAAA 143 (307)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.64 E-value=4e-07 Score=92.36 Aligned_cols=95 Identities=7% Similarity=-0.059 Sum_probs=50.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCC---C--ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCcc-Hh
Q 043758 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTGCE---P--DSYTCNTLIHGFFKMGLFDKGWVLYSQMSDW----GFQPN-MV 274 (918)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~ 274 (918)
+++.+...|.. |++++|+..|++..+.... + ...+++.+...+...|++++|...|++..+. +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 45555555555 6666666666655432100 0 0234555566666666666666666665542 11111 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043758 275 TDLIMISNYCREGEVDAALMLLNSKV 300 (918)
Q Consensus 275 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 300 (918)
.+..++..+...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44555555666667777776666665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=5.6e-07 Score=100.59 Aligned_cols=164 Identities=10% Similarity=-0.040 Sum_probs=119.8
Q ss_pred CCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHhcCCHHHHHH
Q 043758 703 NGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRP-NQVTFCILINGHIAAGEIDQAIG 781 (918)
Q Consensus 703 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 781 (918)
.|++++|.+.+++..+.. +.+...|..+...|...|++++|...+++..+. .| +...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478888999998776443 345788999999999999999999999999875 34 45678888889999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---CChhhHHHHHHHHHh
Q 043758 782 LFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCAN---CLSIPAFNMFKEMIV 858 (918)
Q Consensus 782 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~ 858 (918)
.+++..+.. +.+...+..+..+|...|++++|.+.+++..+.. +.+...+..+..++... |++++|...++++++
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999998852 2256888899999999999999999999988642 33566788888888888 999999999999988
Q ss_pred CCCCCCcccHHHHH
Q 043758 859 HDHVPCLSNCNWLL 872 (918)
Q Consensus 859 ~~~~~~~~~~~~l~ 872 (918)
.+ |.+...+..++
T Consensus 157 ~~-p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QG-VGAVEPFAFLS 169 (568)
T ss_dssp HT-CCCSCHHHHTT
T ss_pred cC-CcccChHHHhC
Confidence 76 66677776666
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-06 Score=83.15 Aligned_cols=125 Identities=8% Similarity=-0.090 Sum_probs=66.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLC 806 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 806 (918)
.+..+...+...|++++|+..|++.. .|+...+..+..+|...|++++|+..|++..+.. +.+...|..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34445555556666666666665542 3455555556666666666666666666655532 123455555666666
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHccCChhhHHHHHHHHH
Q 043758 807 QAGRLSHVFSVFYSMHKRGFVPKK----------------ATYEHLLECFCANCLSIPAFNMFKEMI 857 (918)
Q Consensus 807 ~~g~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~ 857 (918)
..|++++|+..+++..+.. +.+. ..+..+..++.+.|++++|...++++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6666666666666655421 1111 344444445555555555555555554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=8.4e-07 Score=77.95 Aligned_cols=98 Identities=7% Similarity=-0.045 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHH
Q 043758 795 KTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLN 873 (918)
Q Consensus 795 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 873 (918)
...+..+...+.+.|++++|+..|++..+ +.| +...|..+..++...|++++|+..+++++... |.++.+|..++.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 46677778888888888888888888886 345 56678888888888889999999888888877 778888889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 043758 874 ILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 874 ~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
+|.+.|++++|...+++..+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998888876
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.55 E-value=4.5e-06 Score=83.99 Aligned_cols=164 Identities=10% Similarity=-0.004 Sum_probs=121.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcC-CCCcHH----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHH
Q 043758 730 DIFLLLCGVGRMDDAYDHFQMMKREG-LRPNQV----TFCILINGHIAAGEIDQAIGLFNQMNADGC-VPD----KTVYN 799 (918)
Q Consensus 730 ~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~ 799 (918)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..|+++..... .++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999999887642 122321 233466667778899999999999988422 222 24688
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHh----C-CCCCCH-HHHHHHHHHHHccCChhhHHHHHHHHHhCC----CCCC-cccH
Q 043758 800 TLLKGLCQAGRLSHVFSVFYSMHK----R-GFVPKK-ATYEHLLECFCANCLSIPAFNMFKEMIVHD----HVPC-LSNC 868 (918)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~-~~~~ 868 (918)
.+..+|...|++++|...++++.+ . +..+.. .++..+..+|.+.|++++|...+++.+... ..+. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999998873 1 122222 367888889999999999999999886432 1122 6688
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHh
Q 043758 869 NWLLNILCQEKH-FHEAQIVLDVMHK 893 (918)
Q Consensus 869 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 893 (918)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.2e-07 Score=86.94 Aligned_cols=209 Identities=10% Similarity=-0.044 Sum_probs=93.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHH-------HHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCC
Q 043758 74 ALGNIEDALRHFDRLISKNIVPIKLACVSI-------LRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKG 146 (918)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 146 (918)
..++.+.|.+.|.++.+.++. ...+|..+ ..++...++..+++..+...... .|+......- ..|
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~-----~~g 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIA-----IGG 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEE-----CCT
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--Chhhhhhhhc-----cCC
Confidence 456777777777777777654 55577766 45666666666666665554432 2211100000 000
Q ss_pred ChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHH
Q 043758 147 FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLF 226 (918)
Q Consensus 147 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 226 (918)
-+ .. +. ..+..-......+..++...|++++|.++|+.+...++ +......+...+.+.+++++|+..|
T Consensus 90 ~y-------~~-~~-~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l 158 (282)
T 4f3v_A 90 LY-------GD-IT-YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQV 158 (282)
T ss_dssp TT-------CC-CE-EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cc-------cc-cc-cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00 00 00 00000011122233344444555555555554444321 1113334444555555555555555
Q ss_pred HHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--HhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 227 FRMLKTGCEPD--SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN--MVTDLIMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 227 ~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
+...... .|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 159 ~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 159 KSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5333210 010 12344445555555555555555555543222121 223334444455555555555555555554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=74.76 Aligned_cols=107 Identities=10% Similarity=0.007 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 043758 763 FCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCA 842 (918)
Q Consensus 763 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 842 (918)
+......|.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|+..+++..+.. +.+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3444444555555555555555544431 1134444445555555555555555555544321 1133344444445555
Q ss_pred cCChhhHHHHHHHHHhCCCCCCcccHHHHH
Q 043758 843 NCLSIPAFNMFKEMIVHDHVPCLSNCNWLL 872 (918)
Q Consensus 843 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 872 (918)
.|++++|...+++.++.. |.+..++..|.
T Consensus 94 ~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 555555555555554443 44444443333
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.48 E-value=9.9e-07 Score=75.12 Aligned_cols=90 Identities=12% Similarity=0.057 Sum_probs=57.2
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
+..+.+.|++++|+..|+++++.++. ++.+|..+..+|.+.|++++|+..|+++++.+ +.+...|..+..++...|++
T Consensus 20 G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 97 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREW 97 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCH
Confidence 34445666666666666666665543 55566666666666667777766666666654 44555666666666666666
Q ss_pred hHHHHHHHHHHh
Q 043758 149 DEVLEVVNIMRK 160 (918)
Q Consensus 149 ~~A~~~~~~~~~ 160 (918)
++|++.|+...+
T Consensus 98 ~~A~~~~~~al~ 109 (126)
T 4gco_A 98 SKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666665
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=7.9e-07 Score=78.13 Aligned_cols=90 Identities=16% Similarity=0.029 Sum_probs=61.2
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
+..+.+.|++++|...|+++++.+|. ++.+|..+..+|...|++++|+..|+++.... |.+...|..+..+|...|++
T Consensus 43 g~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 43 AYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 34446666777777777777766644 56667777777777777777777777776665 44566677777777777777
Q ss_pred hHHHHHHHHHHh
Q 043758 149 DEVLEVVNIMRK 160 (918)
Q Consensus 149 ~~A~~~~~~~~~ 160 (918)
++|++.|+...+
T Consensus 121 ~eA~~~~~~al~ 132 (151)
T 3gyz_A 121 LKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-05 Score=80.72 Aligned_cols=168 Identities=8% Similarity=-0.019 Sum_probs=121.3
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--H
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQ-----VTFCILINGHIAAGEIDQAIGLFNQMNADG---CVPD--K 795 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~--~ 795 (918)
..+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|+..+++..+.. ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677888889999999999888774322111 123445556778889999999999887641 1122 4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHccCChhhHHHHHHHHHhCC----CCC-C
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHKR-GFVPK-----KATYEHLLECFCANCLSIPAFNMFKEMIVHD----HVP-C 864 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~-~ 864 (918)
.+|+.+...|...|++++|...+++..+. ...|+ ..++..+..+|.+.|++++|...+++.+... .+. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888999999999999999999987621 01222 1477888889999999999999999886432 011 1
Q ss_pred cccHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 043758 865 LSNCNWLLNILCQEKHFHEA-QIVLDVMHK 893 (918)
Q Consensus 865 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 893 (918)
..+|..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 776776543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=4e-05 Score=76.58 Aligned_cols=191 Identities=11% Similarity=-0.044 Sum_probs=140.9
Q ss_pred hhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcC-ChHHHHHH
Q 043758 6 RGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALG-NIEDALRH 84 (918)
Q Consensus 6 ~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g-~~~~A~~~ 84 (918)
..++.+|...++.++.......+|+...+.+ +..+++.-.|...-+.++...| ++++++.+
T Consensus 50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~------------------L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~ 111 (349)
T 3q7a_A 50 SEEYKDAMDYFRAIAAKEEKSERALELTEII------------------VRMNPAHYTVWQYRFSLLTSLNKSLEDELRL 111 (349)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------------HHhCchhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3466777777777777766655666555444 3444444444444444555566 58999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhch-h-cHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChh--------HHHHH
Q 043758 85 FDRLISKNIVPIKLACVSILRGLFAE-E-KFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLD--------EVLEV 154 (918)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~ 154 (918)
++.++..+++ +..+|+....++... + ++++++.+++++.+.. +-|..+|+...-++.+.|.++ ++++.
T Consensus 112 ~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 112 MNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp HHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 9999998876 777999888777776 6 8899999999999887 567788887777776666666 89999
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHhccCc-------hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCh
Q 043758 155 VNIMRKKKGLVPALHPYKSLFYALCKNIR-------TVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNM 219 (918)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 219 (918)
++.+++. .+-|...|+....++.+.++ ++++...+++.....+. |...|+-+-..+.+.|..
T Consensus 190 ~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 190 CNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 9999872 34567778877777777765 68889999988887665 888898877777666653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.43 E-value=3.5e-06 Score=76.27 Aligned_cols=129 Identities=10% Similarity=-0.048 Sum_probs=81.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFC 841 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 841 (918)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence 34455556666667777776666666542 124566666666677777777777777766653 1234556666666777
Q ss_pred ccCChhhHHHHHHHHHhCCCCCCcccHHHHH--HHHHhcCCHHHHHHHHHHHHh
Q 043758 842 ANCLSIPAFNMFKEMIVHDHVPCLSNCNWLL--NILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 842 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 893 (918)
+.|++++|...++++.... |.+...+..+. ..+.+.|++++|...++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 7777777777777777654 55555553333 336777888888887776543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.43 E-value=8.4e-06 Score=77.45 Aligned_cols=123 Identities=11% Similarity=0.018 Sum_probs=57.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC
Q 043758 208 SLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREG 287 (918)
Q Consensus 208 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 287 (918)
.+...+...|++++|+..|++.. .|+...+..+..++...|++++|...+++..+.. +.+...+..+..+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 33344444444444444444432 2334444444444444455555554444444432 223444444444455555
Q ss_pred CHHHHHHHHHHHhhCCCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 288 EVDAALMLLNSKVSSNLAPSV----------------HCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 288 ~~~~A~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
++++|...|+...+.. +.+. ..+..+..++...|++++|...|++..+
T Consensus 86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555554444432 1111 3445555555555555555555555544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-06 Score=83.71 Aligned_cols=131 Identities=8% Similarity=-0.102 Sum_probs=103.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--HhhHHHHHHH
Q 043758 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN--MVTDLIMISN 282 (918)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 282 (918)
.+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 3455677888999999999999988765 3544455666668889999999999999776542 221 3467778899
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043758 283 YCREGEVDAALMLLNSKVSSNLAPS--VHCYTVLIDALYKHNRLMEVDELYKKMLANR 338 (918)
Q Consensus 283 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (918)
+...|++++|+..|++.......|. ...+.....++.+.|+.++|..+|+++....
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999985432243 3466778889999999999999999999854
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-06 Score=79.07 Aligned_cols=85 Identities=5% Similarity=-0.019 Sum_probs=42.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH-hhchhcH--HHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhH
Q 043758 74 ALGNIEDALRHFDRLISKNIVPIKLACVSILRG-LFAEEKF--LEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDE 150 (918)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 150 (918)
..|++++|...|+++.+.++. ++..+..+..+ +...|++ ++|+..|+++.... +.+...+..+...+...|++++
T Consensus 56 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 133 (177)
T 2e2e_A 56 WQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQ 133 (177)
T ss_dssp HTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHH
Confidence 334444444444444443322 34445555555 4455555 55555555555543 3334455555555555555555
Q ss_pred HHHHHHHHHh
Q 043758 151 VLEVVNIMRK 160 (918)
Q Consensus 151 A~~~~~~~~~ 160 (918)
|+..|+.+.+
T Consensus 134 A~~~~~~al~ 143 (177)
T 2e2e_A 134 AIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=86.87 Aligned_cols=94 Identities=12% Similarity=-0.115 Sum_probs=42.4
Q ss_pred hHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 043758 99 ACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYAL 178 (918)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~ 178 (918)
.+..++..+...|++++|+..|+++.... +.+...|..+...+.+.|++++|++.++...+ . .+.+...+..+..++
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE-L-DGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-S-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHH
Confidence 44444444555555555555555544443 22344444444555555555555555555443 1 112233334444444
Q ss_pred hccCchHHHHHHHHHHH
Q 043758 179 CKNIRTVEAESFAREME 195 (918)
Q Consensus 179 ~~~g~~~~a~~~~~~~~ 195 (918)
...|++++|...|++..
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.39 E-value=4.9e-06 Score=70.79 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFC 841 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 841 (918)
.+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|..+++++.+. .+.+...+..+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHH
Confidence 33344444444444444444444444421 113344444444455555555555555544432 1223334444444555
Q ss_pred ccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 043758 842 ANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQ 877 (918)
Q Consensus 842 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 877 (918)
..|++++|...++++.... |.+...+..++.++..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 5555555555555554443 4444444444444433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.9e-05 Score=78.02 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=113.6
Q ss_pred HHHHhccCchHHHHHHHHHHHhCCCC-CCh----hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC-CC----hhhHHHH
Q 043758 175 FYALCKNIRTVEAESFAREMESQGFY-VDK----LMYTSLINGYCSNRNMKMAMRLFFRMLKTGCE-PD----SYTCNTL 244 (918)
Q Consensus 175 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l 244 (918)
+..+...|++++|...+++..+.... |+. ..+..+...+...|++++|+..|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45567778888888888887764322 121 12334666777788899999999888864222 22 1257888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC-----CCCcc-HhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CcchHHH
Q 043758 245 IHGFFKMGLFDKGWVLYSQMSDW-----GFQPN-MVTDLIMISNYCREGEVDAALMLLNSKVSS----NLAP-SVHCYTV 313 (918)
Q Consensus 245 l~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ 313 (918)
..++...|++++|...++++.+. +..+. ..++..+...|.+.|++++|...++...+. +..+ -..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88888899999999988888741 11222 347778888899999999999998876642 1111 1457888
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHHh
Q 043758 314 LIDALYKHNR-LMEVDELYKKMLA 336 (918)
Q Consensus 314 ll~~~~~~g~-~~~a~~~~~~~~~ 336 (918)
+..++...|+ +++|.+.|++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999995 6999998888754
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.5e-06 Score=72.10 Aligned_cols=96 Identities=8% Similarity=-0.040 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043758 725 LYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKG 804 (918)
Q Consensus 725 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 804 (918)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3444555555555555555555555554421 1123344444444445555555555555444421 1123444444444
Q ss_pred HHHcCChhHHHHHHHHHH
Q 043758 805 LCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~ 822 (918)
+...|++++|...+++..
T Consensus 94 ~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 444444444444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=4.8e-06 Score=71.59 Aligned_cols=115 Identities=7% Similarity=-0.020 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 043758 763 FCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCA 842 (918)
Q Consensus 763 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 842 (918)
+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...+++..+. .+.+...+..+..++.+
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-DPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-CccCHHHHHHHHHHHHH
Confidence 3334444444444444444444444421 113344444444445555555555555444432 11223344444445555
Q ss_pred cCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 043758 843 NCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKH 880 (918)
Q Consensus 843 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (918)
.|++++|...+++..... |.+...+..++.++...|+
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 555555555555555443 4444455555555555444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-06 Score=77.36 Aligned_cols=95 Identities=12% Similarity=-0.028 Sum_probs=46.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECF 840 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 840 (918)
.+..+...+...|++++|+..|++++... +.+...|..+..+|...|++++|+..+++..+. .| +...+..+..++
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHH
Confidence 33444445555555555555555554431 113444555555555555555555555555432 22 333444444455
Q ss_pred HccCChhhHHHHHHHHHhC
Q 043758 841 CANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 841 ~~~~~~~~A~~~~~~~~~~ 859 (918)
...|++++|...+++.++.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00015 Score=72.09 Aligned_cols=171 Identities=9% Similarity=-0.039 Sum_probs=120.0
Q ss_pred HhcCChH-HHHHHHHHHHhCCCCCChhhHHHHHHHhhchhc----------HHHHHHHHHHHhhcCCCCcchhHHHHHHH
Q 043758 73 VALGNIE-DALRHFDRLISKNIVPIKLACVSILRGLFAEEK----------FLEAFDYFIKICNAGVDLNCWSYNVLIDG 141 (918)
Q Consensus 73 ~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 141 (918)
.+.|.++ +|+.+++.++..+|. +..+|+.--.++...++ +++++.+++.+.... +-+..+|+...-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445444 788889999988865 66678866666555444 688999999988876 5577888888878
Q ss_pred HHcCC--ChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCc-hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC--
Q 043758 142 LCYKG--FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIR-TVEAESFAREMESQGFYVDKLMYTSLINGYCSN-- 216 (918)
Q Consensus 142 ~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 216 (918)
+...+ .+++++++++.+.+. .+-|...|+...-++...|. ++++...++.+.+..+. |...|+-....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSC
T ss_pred HhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhh
Confidence 87777 488999999999872 34556677766666777777 58888999998887665 777887766555443
Q ss_pred ------------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 043758 217 ------------RNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFF 249 (918)
Q Consensus 217 ------------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 249 (918)
+.++++++.+.+..... +-|...|+.+--.+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34667777777777653 334455654433333
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.35 E-value=8.3e-06 Score=73.72 Aligned_cols=129 Identities=7% Similarity=0.033 Sum_probs=92.0
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHH
Q 043758 204 LMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNY 283 (918)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (918)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777778888888888888877653 2345677777777788888888888888877764 44566777788888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCcchHHH--HHHHHHhcCChhHHHHHHHHHH
Q 043758 284 CREGEVDAALMLLNSKVSSNLAPSVHCYTV--LIDALYKHNRLMEVDELYKKML 335 (918)
Q Consensus 284 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~ 335 (918)
...|++++|...|+...... +.+...+.. ++..+...|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888877654 234444433 3334667788888888877654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.9e-06 Score=85.84 Aligned_cols=95 Identities=11% Similarity=-0.014 Sum_probs=81.3
Q ss_pred HHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 043758 64 ALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLC 143 (918)
Q Consensus 64 a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (918)
+....+..+.+.|++++|...|+.+++.++. +..+|..+..+|.+.|++++|+..++++.+.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3334445557888899999999999887654 77899999999999999999999999999876 567788999999999
Q ss_pred cCCChhHHHHHHHHHHh
Q 043758 144 YKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 144 ~~g~~~~A~~~~~~~~~ 160 (918)
..|++++|+..|+...+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999999876
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.34 E-value=4.8e-06 Score=85.35 Aligned_cols=150 Identities=9% Similarity=-0.081 Sum_probs=108.7
Q ss_pred CChhHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHH
Q 043758 739 GRMDDAYDHFQMMKREGLRP-NQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPD--------------KTVYNTLLK 803 (918)
Q Consensus 739 g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~ 803 (918)
+++++|+..|+...+. .| +...+..+...|.+.|++++|+..|++.++...... ...|..+..
T Consensus 127 ~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3444455444433321 23 234566677777777888888888877776421111 478888888
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 043758 804 GLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHE 883 (918)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 883 (918)
+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...+++++... |.+..++..++.++.+.|++++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999888642 3366678888888999999999999999988876 7788889999999999999988
Q ss_pred H-HHHHHHHH
Q 043758 884 A-QIVLDVMH 892 (918)
Q Consensus 884 A-~~~~~~~~ 892 (918)
| ..+++.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8 44666654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=3.7e-06 Score=74.03 Aligned_cols=90 Identities=13% Similarity=-0.077 Sum_probs=61.9
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
+..+...|++++|...|+.++..++. ++.+|..+..+|...|++++|+..|+++.... +.+...+..+..++...|++
T Consensus 28 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGEL 105 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCH
Confidence 33446666667777777777666543 56677777777777777777777777777665 44566677777777777777
Q ss_pred hHHHHHHHHHHh
Q 043758 149 DEVLEVVNIMRK 160 (918)
Q Consensus 149 ~~A~~~~~~~~~ 160 (918)
++|++.|+...+
T Consensus 106 ~~A~~~~~~al~ 117 (148)
T 2vgx_A 106 AEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-05 Score=68.09 Aligned_cols=99 Identities=15% Similarity=0.261 Sum_probs=58.0
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHH
Q 043758 203 KLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISN 282 (918)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (918)
...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455556666666666666666666665542 2234455555666666666666666666665543 3345555666666
Q ss_pred HHhcCCHHHHHHHHHHHhhCC
Q 043758 283 YCREGEVDAALMLLNSKVSSN 303 (918)
Q Consensus 283 ~~~~g~~~~A~~~~~~~~~~~ 303 (918)
|...|++++|...|+.+.+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 666666666666666665543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=1e-05 Score=69.75 Aligned_cols=116 Identities=9% Similarity=0.010 Sum_probs=62.5
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHH
Q 043758 203 KLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISN 282 (918)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (918)
...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3445555556666666666666666655442 1234455555555556666666666666655543 3344555556666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhc
Q 043758 283 YCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKH 321 (918)
Q Consensus 283 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 321 (918)
|...|++++|...|+...... +.+...+..+..++...
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 666666666666666655443 22334444444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.28 E-value=5.3e-06 Score=76.06 Aligned_cols=122 Identities=7% Similarity=0.050 Sum_probs=78.9
Q ss_pred hccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCh--h
Q 043758 179 CKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHG-FFKMGLF--D 255 (918)
Q Consensus 179 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~--~ 255 (918)
...|++++|...+++..+..+. +...|..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456677777777776665433 56677777777777777777777777776652 2244556666666 5567776 7
Q ss_pred HHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 043758 256 KGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN 303 (918)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 303 (918)
+|...++++.+.. +.+...+..+...|...|++++|...|+.+....
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7777777777654 3445666677777777777777777777777654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.8e-06 Score=78.42 Aligned_cols=121 Identities=12% Similarity=0.016 Sum_probs=57.4
Q ss_pred HhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCC-cHHhHHHHHHHHHhcCC
Q 043758 701 FSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKRE----GLRP-NQVTFCILINGHIAAGE 775 (918)
Q Consensus 701 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~ 775 (918)
...|++++|.+.++.+.. ........+..+...+...|++++|...+++.... +..| ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 345666666664433321 11123455556666666666666666666655441 1111 12244445555556666
Q ss_pred HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043758 776 IDQAIGLFNQMNAD----GCVP--DKTVYNTLLKGLCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 776 ~~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 822 (918)
+++|...+++..+. +..| ....+..+..++...|++++|...+++..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666655555442 1011 12334455555555555555555555544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0002 Score=71.27 Aligned_cols=182 Identities=7% Similarity=-0.047 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh--cHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCC-hhHHHHH
Q 043758 78 IEDALRHFDRLISKNIVPIKLACVSILRGLFAEE--KFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGF-LDEVLEV 154 (918)
Q Consensus 78 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 154 (918)
+++++.+++.++..++. +..+|+....++...+ .+++++.+++++.+.. +-|..+|+...-++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 57899999999998876 7889998887777777 4899999999999987 6688888888888888888 5899999
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHhcc--------------CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC----
Q 043758 155 VNIMRKKKGLVPALHPYKSLFYALCKN--------------IRTVEAESFAREMESQGFYVDKLMYTSLINGYCSN---- 216 (918)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 216 (918)
++.+++. .+.|...|+....++... +.++++...+.......+. |...|+-+-..+.+.
T Consensus 168 ~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcc
Confidence 9999872 345566666665555443 4578899999998887665 888887665555554
Q ss_pred -------CChHHHHHHHHHHHhcCCCCChhhHHHHHHH-----HHhcCChhHHHHHHHHHHhC
Q 043758 217 -------RNMKMAMRLFFRMLKTGCEPDSYTCNTLIHG-----FFKMGLFDKGWVLYSQMSDW 267 (918)
Q Consensus 217 -------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~ 267 (918)
+.++++++.++++.+. .||. .|+.+..+ .-..|..+++...+.++.+.
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3467778888887775 4554 33322111 11344555666666666654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.27 E-value=3.2e-05 Score=77.71 Aligned_cols=131 Identities=5% Similarity=-0.123 Sum_probs=54.9
Q ss_pred HHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcc-----hhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCC----ccc
Q 043758 100 CVSILRGLFAEEKFLEAFDYFIKICNAGVDLNC-----WSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPA----LHP 170 (918)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~ 170 (918)
+...+..+...|++++|+..+++..+.....+. ..+..+...+...|++++|++.++...+......+ ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334445555556666666666555443211100 11223334444455555555555554431110011 123
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHh---CCCC-C--ChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 043758 171 YKSLFYALCKNIRTVEAESFAREMES---QGFY-V--DKLMYTSLINGYCSNRNMKMAMRLFFRML 230 (918)
Q Consensus 171 ~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 230 (918)
++.+...|...|++++|...|++..+ .... + ...+|+.+...|...|++++|+..+++..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444444444555555554444431 1000 0 01244444444444555555555444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-05 Score=68.91 Aligned_cols=119 Identities=8% Similarity=-0.055 Sum_probs=77.9
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHH
Q 043758 203 KLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISN 282 (918)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (918)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 4456666667777777777777777766542 2345566666667777777777777777776653 3445666677777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCh
Q 043758 283 YCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRL 324 (918)
Q Consensus 283 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 324 (918)
|...|++++|...|+...... +.+...+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 777777777777777766654 33455666666666665553
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.23 E-value=8.6e-06 Score=71.24 Aligned_cols=97 Identities=14% Similarity=-0.004 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFC 841 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 841 (918)
.+..+...+...|++++|+..|+++.... +.+...|..+..+|...|++++|+..+++..+.. +.+...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34444555566666666666666665532 1244555566666666666666666666665421 223344555555666
Q ss_pred ccCChhhHHHHHHHHHhCC
Q 043758 842 ANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 842 ~~~~~~~A~~~~~~~~~~~ 860 (918)
..|++++|...+++.+...
T Consensus 98 ~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 6666666666666665543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=9.8e-06 Score=69.14 Aligned_cols=96 Identities=13% Similarity=0.017 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 043758 797 VYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILC 876 (918)
Q Consensus 797 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (918)
.|..+...+...|++++|+..+++..+. .+.+...|..+..++.+.|++++|+..+++.+... |.++..+..++.+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3344444444555555555555544432 11233444444445555555555555555555443 444555555555555
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 043758 877 QEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 877 ~~g~~~~A~~~~~~~~~~ 894 (918)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 555555555555555443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-06 Score=81.89 Aligned_cols=157 Identities=10% Similarity=-0.077 Sum_probs=99.5
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--------------HHHHHHH
Q 043758 737 GVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADG-CVPD--------------KTVYNTL 801 (918)
Q Consensus 737 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~--------------~~~~~~l 801 (918)
..|+++++.+.|+.-... .......+..+...+...|++++|+..|++.++.. -.|+ ...|..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 345555555554422211 01122355666777778888888888888887741 1110 2677888
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCH
Q 043758 802 LKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHF 881 (918)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 881 (918)
..+|...|++++|+..+++..+. -+.+...+..+..++...|++++|...+++.+... |.+..++..++.++...++.
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHH
Confidence 88888999999999999888864 23356678888888899999999999999988776 77788888899888888888
Q ss_pred HHHH-HHHHHHHhCCC
Q 043758 882 HEAQ-IVLDVMHKRGR 896 (918)
Q Consensus 882 ~~A~-~~~~~~~~~~~ 896 (918)
+++. ..+..|...+.
T Consensus 173 ~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 173 RKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HC--------------
T ss_pred HHHHHHHHHHHhcccc
Confidence 8777 55666655543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.18 E-value=9e-06 Score=71.10 Aligned_cols=90 Identities=11% Similarity=-0.117 Sum_probs=69.4
Q ss_pred hhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCCh
Q 043758 69 QNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFL 148 (918)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 148 (918)
+..+.+.|++++|...|+.++..++. ++..|..+..+|...|++++|+..|+++.... +.+...+..+..++...|++
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 33446777788888888888776654 66677888888888888888888888888775 55667777888888888888
Q ss_pred hHHHHHHHHHHh
Q 043758 149 DEVLEVVNIMRK 160 (918)
Q Consensus 149 ~~A~~~~~~~~~ 160 (918)
++|++.|+...+
T Consensus 103 ~~A~~~~~~al~ 114 (142)
T 2xcb_A 103 DGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888776
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.18 E-value=9.5e-06 Score=67.33 Aligned_cols=96 Identities=10% Similarity=-0.121 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCC--CcccHHHHHHHH
Q 043758 798 YNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVP--CLSNCNWLLNIL 875 (918)
Q Consensus 798 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~ 875 (918)
+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|...+++..... |. +...+..++.+|
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL-DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 334444444444444444444444432 11233344444444455555555555555554443 33 444555555555
Q ss_pred Hhc-CCHHHHHHHHHHHHhCC
Q 043758 876 CQE-KHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 876 ~~~-g~~~~A~~~~~~~~~~~ 895 (918)
... |++++|.+.+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHhCCHHHHHHHHHHHhhcc
Confidence 555 55555555555554444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=3.8e-05 Score=64.29 Aligned_cols=94 Identities=12% Similarity=0.051 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 043758 764 CILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCAN 843 (918)
Q Consensus 764 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 843 (918)
..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 334444444444444444444444421 1133444444444444444444444444444321 11233444444444444
Q ss_pred CChhhHHHHHHHHHhC
Q 043758 844 CLSIPAFNMFKEMIVH 859 (918)
Q Consensus 844 ~~~~~A~~~~~~~~~~ 859 (918)
|++++|...+++....
T Consensus 86 ~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 4444444444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-05 Score=75.01 Aligned_cols=156 Identities=10% Similarity=-0.078 Sum_probs=115.3
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CcHHHHHHHHHHHHcCCCh
Q 043758 482 KWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKA----GID-PDEVFFTTMINGYLQNRKP 556 (918)
Q Consensus 482 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~ 556 (918)
..|++++|..+++.+.. .+.....++..+...+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45788888885554443 23346778899999999999999999999998762 212 2345678888899999999
Q ss_pred HHHHHHHHHHHhC----CCCC--CchhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCC
Q 043758 557 IEACQLFEKMKEN----SVQP--GSYPYTALISGLVKKGMVDLGCMYLDRMLAD----GFV-PNVVLYTALINHFLRAGE 625 (918)
Q Consensus 557 ~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~ 625 (918)
++|...+++..+. +-.| ....+..+...+...|++++|...+++..+. +.. .-..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999987653 2111 1345677888899999999999999987753 211 113346788889999999
Q ss_pred HHHHHHHHHHHHH
Q 043758 626 FEFASRLENLMVT 638 (918)
Q Consensus 626 ~~~a~~~~~~~~~ 638 (918)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988864
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-05 Score=80.53 Aligned_cols=131 Identities=11% Similarity=0.001 Sum_probs=99.7
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCC----------------hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 202 DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPD----------------SYTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
+...|..+...|...|++++|+..|++..+.. |+ ...|..+..++.+.|++++|...+++.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567777777777888888888887777653 33 3677788888888888888888888888
Q ss_pred hCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 043758 266 DWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEV-DELYKKMLA 336 (918)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 336 (918)
+.. +.+...+..+..+|...|++++|...|+...+.. +.+..++..+..++...|++++| ...|+.|..
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 5567788888888888889999988888888765 44567788888888888888877 446666643
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.9e-05 Score=71.12 Aligned_cols=91 Identities=9% Similarity=-0.130 Sum_probs=76.8
Q ss_pred hhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCC
Q 043758 68 YQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGF 147 (918)
Q Consensus 68 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 147 (918)
.+..+.+.|++++|+..|+++++.++. +..+|..+..+|...|++++|+..|+++++.. +.+...|..+..++...|+
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 94 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDMAD 94 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccC
Confidence 344557888888888888888887754 67788899999999999999999999998876 5567888899999999999
Q ss_pred hhHHHHHHHHHHh
Q 043758 148 LDEVLEVVNIMRK 160 (918)
Q Consensus 148 ~~~A~~~~~~~~~ 160 (918)
+++|++.|++..+
T Consensus 95 ~~~A~~~~~~al~ 107 (164)
T 3sz7_A 95 YKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999887
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=2.3e-06 Score=80.21 Aligned_cols=132 Identities=12% Similarity=-0.016 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCC-CC--------------hhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 203 KLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCE-PD--------------SYTCNTLIHGFFKMGLFDKGWVLYSQMSDW 267 (918)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 267 (918)
...+..+...+...|++++|+..|++..+.... |+ ...|..+..++...|++++|...++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345666677777778888888888777764211 10 156667777778888888888888888776
Q ss_pred CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHH-HHHHHHHh
Q 043758 268 GFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVD-ELYKKMLA 336 (918)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~ 336 (918)
. +.+...+..+..+|...|++++|...|+...+.. +.+...+..+..++...++..++. ..|..|..
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 4566777778888888888888888888877654 345566677777777666666665 44555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.12 E-value=7.5e-05 Score=67.13 Aligned_cols=104 Identities=13% Similarity=-0.025 Sum_probs=54.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECF 840 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 840 (918)
.+..+...+...|++++|+..|++.++.. +-+...|..+..+|...|++++|+..+++..+. .| +...|..+..++
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 44444555555555555555555555531 113455555555555555555555555555542 23 344555555555
Q ss_pred HccCChhhHHHHHHHHHhCCCCCCcccHH
Q 043758 841 CANCLSIPAFNMFKEMIVHDHVPCLSNCN 869 (918)
Q Consensus 841 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 869 (918)
.+.|++++|...+++.+... |.+...+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 117 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE-GNGGSDAM 117 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH-SSSCCHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 66666666666666655544 44444333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.12 E-value=2.5e-05 Score=67.79 Aligned_cols=99 Identities=6% Similarity=-0.106 Sum_probs=56.6
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043758 759 NQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLE 838 (918)
Q Consensus 759 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 838 (918)
+...+..+...+...|++++|+..|++.+... +.+...|..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34455556666666666666666666665542 1234556666666666666666666666665421 223445555555
Q ss_pred HHHccCChhhHHHHHHHHHhC
Q 043758 839 CFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 839 ~~~~~~~~~~A~~~~~~~~~~ 859 (918)
++...|++++|...+++++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 666666666666666665543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.6e-05 Score=67.66 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=56.5
Q ss_pred hhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCC--Cc----chhHHHHHHH
Q 043758 68 YQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVD--LN----CWSYNVLIDG 141 (918)
Q Consensus 68 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~l~~~ 141 (918)
++..+.+.|++++|+..|+++++.+|. +..+|..+..+|...|++++|+..|++.++.... ++ ..+|..+..+
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~ 92 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNA 92 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 344446666666666667776666543 5666777777777777777777777776654211 11 1245555566
Q ss_pred HHcCCChhHHHHHHHHHHh
Q 043758 142 LCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 142 ~~~~g~~~~A~~~~~~~~~ 160 (918)
+...|++++|++.|++..+
T Consensus 93 ~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 93 FQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 6666666666666666654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-05 Score=67.54 Aligned_cols=95 Identities=12% Similarity=-0.020 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 043758 798 YNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILC 876 (918)
Q Consensus 798 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (918)
+..+...+.+.|++++|+..+++..+. .| +...|..+..++...|++++|+..++++++.. |.+..++..++.+|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 444556666777777777777776652 33 45566666667777777777777777777665 666777777777777
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 043758 877 QEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 877 ~~g~~~~A~~~~~~~~~~~ 895 (918)
..|++++|...+++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 7777777777777776654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.2e-05 Score=66.86 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=49.7
Q ss_pred hhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 98 LACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
.++..++..+.+.|++++|+..|+++++.. |.+..+|+.+..+|...|++++|++.++..++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 366678888888888888888888888775 55667788888888888888888888888765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.6e-05 Score=66.43 Aligned_cols=89 Identities=12% Similarity=0.062 Sum_probs=59.0
Q ss_pred hhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChh
Q 043758 70 NDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLD 149 (918)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 149 (918)
..+.+.|++++|...|+.+++.++. +..+|..+..++...|++++|+..|+++.+.. +.+...|..+..++...|+++
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~ 89 (126)
T 3upv_A 12 KEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYA 89 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHH
Confidence 3346666666666667766665543 55666777777777777777777777776664 445566666777777777777
Q ss_pred HHHHHHHHHHh
Q 043758 150 EVLEVVNIMRK 160 (918)
Q Consensus 150 ~A~~~~~~~~~ 160 (918)
+|++.|+...+
T Consensus 90 ~A~~~~~~al~ 100 (126)
T 3upv_A 90 SALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776655
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=6.3e-05 Score=66.16 Aligned_cols=97 Identities=12% Similarity=-0.006 Sum_probs=66.1
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043758 724 NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPN----QVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYN 799 (918)
Q Consensus 724 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 799 (918)
+...+..+...+...|++++|+..|++..+. .|+ ...+..+..+|...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4566777777777777777777777777763 454 3456666667777777777777777776642 12456666
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHh
Q 043758 800 TLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
.+..+|...|++++|...+++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677777777777777777777664
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.04 E-value=5.7e-05 Score=62.47 Aligned_cols=88 Identities=18% Similarity=0.115 Sum_probs=48.2
Q ss_pred hhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCC--cchhHHHHHHHHHcC-CC
Q 043758 71 DFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDL--NCWSYNVLIDGLCYK-GF 147 (918)
Q Consensus 71 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-g~ 147 (918)
++...|++++|...|+++.+..+. +..++..+..++...|++++|+..|+++.+.. +. +...+..+...+... |+
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~~ 92 (112)
T 2kck_A 15 LQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEGK 92 (112)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSSC
T ss_pred HHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhCC
Confidence 334555555555555555554432 34455555555666666666666666655543 22 344555555555566 66
Q ss_pred hhHHHHHHHHHHh
Q 043758 148 LDEVLEVVNIMRK 160 (918)
Q Consensus 148 ~~~A~~~~~~~~~ 160 (918)
+++|++.++...+
T Consensus 93 ~~~A~~~~~~~~~ 105 (112)
T 2kck_A 93 EVEAEIAEARAKL 105 (112)
T ss_dssp SHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhh
Confidence 6666666665554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=8.7e-05 Score=62.02 Aligned_cols=99 Identities=10% Similarity=-0.050 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHH
Q 043758 203 KLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISN 282 (918)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (918)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445556666666666666666666665542 2244455555666666666666666666665543 3345556666666
Q ss_pred HHhcCCHHHHHHHHHHHhhCC
Q 043758 283 YCREGEVDAALMLLNSKVSSN 303 (918)
Q Consensus 283 ~~~~g~~~~A~~~~~~~~~~~ 303 (918)
+...|++++|...|+...+.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 666666666666666665543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-05 Score=66.94 Aligned_cols=86 Identities=14% Similarity=-0.060 Sum_probs=55.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.+.|++++|...|+++++.++. +..+|..+..++...|++++|+..|+++++.. +.+...+..+..++...|++++|+
T Consensus 28 ~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~A~ 105 (121)
T 1hxi_A 28 LKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAAL 105 (121)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5566666666666666665543 55566666666677777777777777666654 345556666666666667777777
Q ss_pred HHHHHHHh
Q 043758 153 EVVNIMRK 160 (918)
Q Consensus 153 ~~~~~~~~ 160 (918)
..|+...+
T Consensus 106 ~~~~~al~ 113 (121)
T 1hxi_A 106 ASLRAWLL 113 (121)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 77666654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.96 E-value=4.3e-05 Score=66.02 Aligned_cols=62 Identities=10% Similarity=-0.209 Sum_probs=33.8
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHhC-------CCCCCcccH----HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 832 TYEHLLECFCANCLSIPAFNMFKEMIVH-------DHVPCLSNC----NWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 832 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
.|..+..++.+.|++++|+..+++.++. + |.+...| +.++.+|...|++++|...|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3444444444445555544444444443 4 4445556 66666666666666666666666543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.95 E-value=7e-05 Score=64.84 Aligned_cols=100 Identities=7% Similarity=-0.125 Sum_probs=74.6
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043758 722 MPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTL 801 (918)
Q Consensus 722 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 801 (918)
+.+...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|+..+++..+.. +.+...|..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3456777888888888888888888888877753 2245567777778888888888888888887752 2256777788
Q ss_pred HHHHHHcCChhHHHHHHHHHHh
Q 043758 802 LKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
..+|...|++++|...+++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888887764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=5.8e-05 Score=65.02 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=87.3
Q ss_pred hhhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHH
Q 043758 2 QLINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDA 81 (918)
Q Consensus 2 ~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A 81 (918)
++-|-+++++|.+.+++++...|. ++.+|..+..++...++++.+..... .+++|
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~P~------------------~aea~~n~G~~l~~l~~~~~g~~al~-------~~~eA 65 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSNPL------------------DADNLTRWGGVLLELSQFHSISDAKQ-------MIQEA 65 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTT------------------CHHHHHHHHHHHHHHHHHSCHHHHHH-------HHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCCC------------------CHHHHHHHHHHHHHhcccchhhhhHh-------HHHHH
Confidence 456778999999999999999998 66667777777777776654444322 26899
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHhhchh-----------cHHHHHHHHHHHhhcCCCCcchhHHHHHHH
Q 043758 82 LRHFDRLISKNIVPIKLACVSILRGLFAEE-----------KFLEAFDYFIKICNAGVDLNCWSYNVLIDG 141 (918)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 141 (918)
+..|+++++.++. +..+|+.+..+|...| ++++|+..|+++++.. |+...|...+..
T Consensus 66 i~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~~ 133 (158)
T 1zu2_A 66 ITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 9999999998866 6779999999998875 8999999999999874 565555544443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00012 Score=62.64 Aligned_cols=109 Identities=9% Similarity=0.037 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHHHH
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADG--CVPD----KTVYN 799 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~ 799 (918)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++.+.. ..++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455566667777777777777777776642 2344556666666777777777777777766541 1112 55666
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043758 800 TLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLL 837 (918)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 837 (918)
.+..++...|++++|...+++..+ ..|+...+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 666667777777777777776665 234544444433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00033 Score=75.04 Aligned_cols=165 Identities=9% Similarity=-0.060 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcc----cHHHHHHHHhccCchHHHHHHHHHHHh----CCCCC-Chhh
Q 043758 135 YNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALH----PYKSLFYALCKNIRTVEAESFAREMES----QGFYV-DKLM 205 (918)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~ 205 (918)
+..++..|...|++++|.+.+..+.+..+..++.. +.+.+...+...|+++.|..+++.... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 44556666666666666666666544111111111 112222233344556666655555432 11111 1234
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhc--CC--CCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCcc--Hh
Q 043758 206 YTSLINGYCSNRNMKMAMRLFFRMLKT--GC--EPD-SYTCNTLIHGFFKMGLFDKGWVLYSQMSDW----GFQPN--MV 274 (918)
Q Consensus 206 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~ 274 (918)
+..+...|...|++++|..++++.... +. .+. ...+..++..|...|++++|..++++.... +.++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 556666666667777776666665432 10 111 224555566666666666666666655432 11111 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 043758 275 TDLIMISNYCREGEVDAALMLLNSK 299 (918)
Q Consensus 275 ~~~~l~~~~~~~g~~~~A~~~~~~~ 299 (918)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444555556666665555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00017 Score=63.30 Aligned_cols=98 Identities=13% Similarity=0.019 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHH
Q 043758 202 DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPD----SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDL 277 (918)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (918)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...++...+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3445555666666666666666666666654 344 3455555555666666666666666665543 33455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 278 IMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 278 ~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
.+..+|...|++++|...|+.....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5666666666666666666665554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.91 E-value=3.4e-05 Score=66.09 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=54.9
Q ss_pred hhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCC--CCc----chhHHHHHHHHH
Q 043758 70 NDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGV--DLN----CWSYNVLIDGLC 143 (918)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~l~~~~~ 143 (918)
..+...|+++.|...|+.+....+. +..++..+...+...|++++|+..++++..... +++ ..++..+...+.
T Consensus 12 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 90 (131)
T 1elr_A 12 NDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence 3345566666666666666655432 455666667777777777777777776665431 111 445666666666
Q ss_pred cCCChhHHHHHHHHHHh
Q 043758 144 YKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 144 ~~g~~~~A~~~~~~~~~ 160 (918)
..|++++|.+.|+.+.+
T Consensus 91 ~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 91 KEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 66777777766666665
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.90 E-value=1.1e-05 Score=67.70 Aligned_cols=86 Identities=9% Similarity=-0.002 Sum_probs=67.0
Q ss_pred hcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHH
Q 043758 74 ALGNIEDALRHFDRLISKNI--VPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEV 151 (918)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 151 (918)
..|++++|+..|+++++.++ +.+..++..+..+|...|++++|+..|+++.+.. +.+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35778888888888888641 1245688888899999999999999999988876 55677888888999999999999
Q ss_pred HHHHHHHHh
Q 043758 152 LEVVNIMRK 160 (918)
Q Consensus 152 ~~~~~~~~~ 160 (918)
++.|+...+
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998876
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=5.9e-05 Score=81.00 Aligned_cols=211 Identities=12% Similarity=0.043 Sum_probs=103.9
Q ss_pred hhhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHH
Q 043758 2 QLINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDA 81 (918)
Q Consensus 2 ~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A 81 (918)
.+..+|++.+|.+.+..+++..|...++... ... .....+..+.|+.-++.++...|++++|
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~------------~~~------~~~~~~~~~~al~~l~~~y~~~~~~~~a 74 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG------------ASV------DDKRRNEQETSILELGQLYVTMGAKDKL 74 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS------------SSB------CSHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHH------------HHH------HHHHhhhHHHHHHHHHHHHHHCCCHHHH
Confidence 3566778888888888877776653322100 000 0000011122333334444455555555
Q ss_pred HHHHHHHHhCCCC-CC----hhhHHHHHHHhhchhcHHHHHHHHHHHhhc----CCCC-cchhHHHHHHHHHcCCChhHH
Q 043758 82 LRHFDRLISKNIV-PI----KLACVSILRGLFAEEKFLEAFDYFIKICNA----GVDL-NCWSYNVLIDGLCYKGFLDEV 151 (918)
Q Consensus 82 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A 151 (918)
.+.+..+...... ++ ....+.+...+...|++++|+.+++..... +..+ -..++..+...+...|++++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence 5555444332100 01 112333444455567777777777665431 1111 123556667777777777777
Q ss_pred HHHHHHHHhcCCCCCC----cccHHHHHHHHhccCchHHHHHHHHHHHhC--CCC-C-C--hhhHHHHHHHHhcCCChHH
Q 043758 152 LEVVNIMRKKKGLVPA----LHPYKSLFYALCKNIRTVEAESFAREMESQ--GFY-V-D--KLMYTSLINGYCSNRNMKM 221 (918)
Q Consensus 152 ~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~li~~~~~~g~~~~ 221 (918)
..+++.+........+ ...+..++..|...|++++|...++..... ... | . ...+..+...+...|++++
T Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~ 234 (434)
T 4b4t_Q 155 LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKT 234 (434)
T ss_dssp HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHH
Confidence 7777766542111111 234555566666666666666666654432 111 1 1 1234445555556666666
Q ss_pred HHHHHHHHH
Q 043758 222 AMRLFFRML 230 (918)
Q Consensus 222 A~~~~~~m~ 230 (918)
|...|.+..
T Consensus 235 A~~~~~~a~ 243 (434)
T 4b4t_Q 235 AFSYFFESF 243 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00011 Score=78.84 Aligned_cols=128 Identities=8% Similarity=-0.124 Sum_probs=84.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNADGCV-P-------------DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFV 827 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 827 (918)
.+..+...+.+.|++++|+..|+++++.... + ....|..+..+|.+.|++++|+..+++..+.. +
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 4455555566666666666666666553111 0 04677777778888888888888888877631 2
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH-HHHHH
Q 043758 828 PKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQI-VLDVM 891 (918)
Q Consensus 828 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 891 (918)
.+...|..+..+|...|++++|...++++++.. |.+..++..++.++.+.|++++|.+ .+..|
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777778888888888888888888776 6777788888888888888877653 34444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.88 E-value=5e-05 Score=64.92 Aligned_cols=92 Identities=12% Similarity=0.023 Sum_probs=55.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHH
Q 043758 765 ILINGHIAAGEIDQAIGLFNQMNADGCVPDK---TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPK----KATYEHLL 837 (918)
Q Consensus 765 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~ 837 (918)
.+...+...|++++|...|+.+.+.... +. ..+..+..++...|++++|...+++..+. .|+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHH
Confidence 3455566677777777777776664211 12 35556666667777777777777666642 232 34455555
Q ss_pred HHHHccCChhhHHHHHHHHHhC
Q 043758 838 ECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 838 ~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
.++.+.|++++|...+++++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.85 E-value=5.2e-05 Score=67.99 Aligned_cols=98 Identities=9% Similarity=-0.063 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhC----CCC-CCcc
Q 043758 797 VYNTLLKGLCQAGRLSHVFSVFYSMHKR----GFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVH----DHV-PCLS 866 (918)
Q Consensus 797 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~ 866 (918)
++..+...+...|++++|...+++..+. +..+ ....+..+..++...|++++|...+++.+.. +.+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444555555555555555544321 0000 0123444445555666666666655555422 111 1144
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 867 NCNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 867 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
.+..++.+|...|++++|.+.+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5777888888888888888888877653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00028 Score=77.38 Aligned_cols=135 Identities=9% Similarity=-0.039 Sum_probs=100.3
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhc----------HHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcC
Q 043758 76 GNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEK----------FLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYK 145 (918)
Q Consensus 76 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 145 (918)
...++|++.++.+++.++. +..+|+....++...|+ +++++..++.+.+.. +-+..+|+...-++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3456778889999888865 66688877777777777 888999999988876 55777888888888888
Q ss_pred C--ChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccC-chHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 043758 146 G--FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNI-RTVEAESFAREMESQGFYVDKLMYTSLINGYCS 215 (918)
Q Consensus 146 g--~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 215 (918)
+ +++++++.++++.+. .+-+...|+....++.+.| .++++.+.++++.+..+. +..+|+-...++..
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~ 190 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 190 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHh
Confidence 8 668888888888872 2345666766666666777 777888888887777655 67777766655544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.81 E-value=2.7e-05 Score=83.95 Aligned_cols=118 Identities=12% Similarity=-0.004 Sum_probs=66.4
Q ss_pred hhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhH
Q 043758 71 DFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDE 150 (918)
Q Consensus 71 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 150 (918)
.+.+.|++++|...|+++++.++. +..+|..+..+|.+.|++++|+..++++.+.. +.+..++..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 335666777777777766665533 45566666667777777777777777766654 3455566666666666666666
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHH--HhccCchHHHHHHHH
Q 043758 151 VLEVVNIMRKKKGLVPALHPYKSLFYA--LCKNIRTVEAESFAR 192 (918)
Q Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~ 192 (918)
|++.|++..+.. +.+...+..+..+ +.+.|++++|...++
T Consensus 93 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666521 1122233333333 444555555555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.80 E-value=2e-05 Score=66.06 Aligned_cols=86 Identities=14% Similarity=0.036 Sum_probs=44.5
Q ss_pred cCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHH
Q 043758 773 AGEIDQAIGLFNQMNADGC-VP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAF 850 (918)
Q Consensus 773 ~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 850 (918)
.|++++|+..|+++++.+. .| +...+..+..+|...|++++|+..+++..+.. +-+...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4556666666666655321 12 23455555566666666666666666655421 223445555555566666666666
Q ss_pred HHHHHHHhC
Q 043758 851 NMFKEMIVH 859 (918)
Q Consensus 851 ~~~~~~~~~ 859 (918)
..+++.+..
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.80 E-value=4.7e-05 Score=77.94 Aligned_cols=150 Identities=7% Similarity=-0.084 Sum_probs=81.3
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043758 725 LYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKG 804 (918)
Q Consensus 725 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 804 (918)
...+..+...+.+.|++++|+..|++.+.. .|+... +...|+.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 456677777777888888888888887763 454431 222333333332221 1367788888
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHH-HHhcCCHH
Q 043758 805 LCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNI-LCQEKHFH 882 (918)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~ 882 (918)
|.+.|++++|+..+++..+. .| +...|..+..+|...|++++|...+++++... |.+..++..+..+ ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988863 44 66788888889999999999999999988776 6778888888877 44556788
Q ss_pred HHHHHHHHHHhCCC
Q 043758 883 EAQIVLDVMHKRGR 896 (918)
Q Consensus 883 ~A~~~~~~~~~~~~ 896 (918)
.+..++.+|.+...
T Consensus 317 ~a~~~~~~~l~~~p 330 (338)
T 2if4_A 317 KQKEMYKGIFKGKD 330 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHhhCCCC
Confidence 88888888876653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.79 E-value=5.2e-05 Score=81.66 Aligned_cols=115 Identities=10% Similarity=-0.023 Sum_probs=53.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChh
Q 043758 770 HIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSI 847 (918)
Q Consensus 770 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~ 847 (918)
+.+.|++++|++.|+++++. .| +...|..+..+|.+.|++++|+..+++..+. .| +...+..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 33444555555555554442 12 2344445555555555555555555555442 22 3334444445555555555
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHH--HHhcCCHHHHHHHHH
Q 043758 848 PAFNMFKEMIVHDHVPCLSNCNWLLNI--LCQEKHFHEAQIVLD 889 (918)
Q Consensus 848 ~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 889 (918)
+|.+.++++++.. |.+...+..++.+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555555443 4444455555544 555555555555554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00014 Score=62.84 Aligned_cols=89 Identities=12% Similarity=-0.008 Sum_probs=67.3
Q ss_pred hhHhcCChHHHHHHHHHHHhCCCCC------C-----hhhHHHHHHHhhchhcHHHHHHHHHHHhhc-------CCCCcc
Q 043758 71 DFVALGNIEDALRHFDRLISKNIVP------I-----KLACVSILRGLFAEEKFLEAFDYFIKICNA-------GVDLNC 132 (918)
Q Consensus 71 ~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~ 132 (918)
.+.+.|++++|+..|+++++.++.. + ..+|..+..++.+.|++++|+..+++.++. . +.+.
T Consensus 20 ~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~ 98 (159)
T 2hr2_A 20 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEG 98 (159)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchH
Confidence 3467777888888888877765331 1 227888888888889999998888888876 5 4455
Q ss_pred hhH----HHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 133 WSY----NVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 133 ~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
..| +....++...|++++|+..|++..+
T Consensus 99 ~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 99 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 677 7888888888888888888888766
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00036 Score=59.41 Aligned_cols=90 Identities=14% Similarity=0.091 Sum_probs=40.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc---HhhHHHHHH
Q 043758 209 LINGYCSNRNMKMAMRLFFRMLKTGCEPDS----YTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPN---MVTDLIMIS 281 (918)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 281 (918)
+...+...|++++|...|++..+.. |+. ..+..+..++...|++++|...++.+.+.. +.+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3334444555555555555444431 211 233444444445555555555555544432 111 333444444
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 043758 282 NYCREGEVDAALMLLNSKVS 301 (918)
Q Consensus 282 ~~~~~g~~~~A~~~~~~~~~ 301 (918)
+|...|++++|...|+.+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00015 Score=74.92 Aligned_cols=91 Identities=7% Similarity=-0.123 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHH
Q 043758 794 DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLL 872 (918)
Q Consensus 794 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 872 (918)
+...|..+..+|.+.|++++|+..+++..+ +.| +...+..+..+|.+.|++++|...++++++.. |.+..++..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 346777888888888888888888888886 344 55677778888888888888888888888776 66778888888
Q ss_pred HHHHhcCCHHHHHHH
Q 043758 873 NILCQEKHFHEAQIV 887 (918)
Q Consensus 873 ~~~~~~g~~~~A~~~ 887 (918)
.++...++.+++.+.
T Consensus 349 ~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 349 KVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887776543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.74 E-value=9.6e-05 Score=66.27 Aligned_cols=103 Identities=11% Similarity=-0.000 Sum_probs=65.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CC---------CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 761 VTFCILINGHIAAGEIDQAIGLFNQMNAD-------GC---------VP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 761 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
..+......+.+.|++++|+..|.+.+.. .- .| +...|..+..+|...|++++|+..+++..+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 35666777788888888888888887763 00 11 224566666666677777777777766665
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCc
Q 043758 824 RGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCL 865 (918)
Q Consensus 824 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 865 (918)
.. +.+...|..+..++...|++++|...+++.+... |.+.
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-p~~~ 131 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH-PAAA 131 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CCCH
Confidence 31 2244566666666677777777777777666654 4443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00093 Score=73.24 Aligned_cols=161 Identities=7% Similarity=-0.105 Sum_probs=110.5
Q ss_pred HHHHHHcCCchhHHhhhhhhhHhcCC----------hHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh--cHHHHHHH
Q 043758 52 MKKLIKFGQSQSALLLYQNDFVALGN----------IEDALRHFDRLISKNIVPIKLACVSILRGLFAEE--KFLEAFDY 119 (918)
Q Consensus 52 ~~~l~~~~~~~~a~~~~~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~ 119 (918)
-.++...+++-.|+..-+.++...|+ +++++..++.+++.+++ +..+|+....++.+.+ ++++++..
T Consensus 53 ~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~ 131 (567)
T 1dce_A 53 SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELEL 131 (567)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHH
Confidence 33444445554554444444444455 79999999999998877 7789998888888888 77999999
Q ss_pred HHHHhhcCCCCcchhHHHHHHHHHcCC-ChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhcc--------------Cch
Q 043758 120 FIKICNAGVDLNCWSYNVLIDGLCYKG-FLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKN--------------IRT 184 (918)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------------g~~ 184 (918)
++++.+.+ +-|..+|+...-++.+.| .++++++.++.+++ ..+.+...|+....++.+. +.+
T Consensus 132 ~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~ 208 (567)
T 1dce_A 132 CARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL 208 (567)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH
T ss_pred HHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhcccccccccccccHHHH
Confidence 99999987 668889999888888889 89999999999986 2344566777666655442 334
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 043758 185 VEAESFAREMESQGFYVDKLMYTSLINGYCSNR 217 (918)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 217 (918)
+++.+.++......+. |...|+-+-..+.+.+
T Consensus 209 ~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 209 LKELELVQNAFFTDPN-DQSAWFYHRWLLGRAE 240 (567)
T ss_dssp HHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCC
Confidence 4444444444443332 4444444444444333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00019 Score=64.23 Aligned_cols=63 Identities=11% Similarity=-0.036 Sum_probs=54.0
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
..+|..+..+|.+.|++++|+..++++++.. +.+...|..+..++...|++++|+..|+...+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3578888888999999999999999988876 56777888889999999999999999998887
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0002 Score=76.35 Aligned_cols=29 Identities=7% Similarity=0.077 Sum_probs=21.6
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 865 LSNCNWLLNILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 865 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 893 (918)
......+..++...|++++|..++.++++
T Consensus 435 ~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 435 KDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777788888888888888776
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00029 Score=62.98 Aligned_cols=134 Identities=11% Similarity=-0.024 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCc----HHHHHHHHHHHHcCCChHHHHHHHHHHHhCC----CCC-C
Q 043758 505 VAIYDAIIGHLCKEKRILEAEDMFKRMLKAGI-DPD----EVFFTTMINGYLQNRKPIEACQLFEKMKENS----VQP-G 574 (918)
Q Consensus 505 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~-~ 574 (918)
..++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+.. ..+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 44677888889999999999999998876310 011 2467788889999999999999999876531 111 1
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043758 575 SYPYTALISGLVKKGMVDLGCMYLDRMLAD----GFV-PNVVLYTALINHFLRAGEFEFASRLENLMVT 638 (918)
Q Consensus 575 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 638 (918)
...+..+...+...|++++|...+++..+. +.. ....++..+..++...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345677788889999999999999987754 211 1245677888999999999999999998764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=8.8e-05 Score=63.88 Aligned_cols=99 Identities=10% Similarity=-0.083 Sum_probs=78.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcH----------HHHHHHHHHHhhcCCCCcchhHHHHHHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKF----------LEAFDYFIKICNAGVDLNCWSYNVLIDGL 142 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (918)
.+.+.+++|...++.+.+.++. +..+|+.+..++...+++ ++|+..|++.++.. +.+..+|+.+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 4556678999999999998866 788999999999888775 59999999999886 55777899999999
Q ss_pred HcCC-----------ChhHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 043758 143 CYKG-----------FLDEVLEVVNIMRKKKGLVPALHPYKSLFY 176 (918)
Q Consensus 143 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~ 176 (918)
...| ++++|++.|++..+ +.|+...|..-+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 8764 78888888888887 5666655544443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00045 Score=74.02 Aligned_cols=130 Identities=11% Similarity=-0.013 Sum_probs=101.9
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCC----------------hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 202 DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPD----------------SYTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
....|..+...|.+.|++++|+..|++..+.. |+ ...|..+..++.+.|++++|...+++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34567788888889999999999999888752 33 4678888888999999999999999998
Q ss_pred hCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHH-HHHHHH
Q 043758 266 DWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDE-LYKKML 335 (918)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~ 335 (918)
+.. +.+...+..+..+|...|++++|...|+...+.. +.+..++..+..++...++.+++.. .++.|.
T Consensus 345 ~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 345 GLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 875 5567888889999999999999999999988875 4567788888888888888877664 455554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.62 E-value=6.9e-05 Score=79.87 Aligned_cols=137 Identities=8% Similarity=-0.044 Sum_probs=87.4
Q ss_pred hhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHH
Q 043758 4 INRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALR 83 (918)
Q Consensus 4 ~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~ 83 (918)
..+|++++|..++.+++..... ......+....+++.|..++...|++++|..++ +.|+.
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~----------~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~----------~~aL~ 379 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEP----------VFADTNLYVLRLLSIASEVLSYLQAYEEASHYA----------RRMVD 379 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTT----------TBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH----------HHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHH----------HHHHH
Confidence 3456666666666665443211 011111222357888889998899999998886 56677
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC---CCCc----chhHHHHHHHHHcCCChhHHHHHHH
Q 043758 84 HFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAG---VDLN----CWSYNVLIDGLCYKGFLDEVLEVVN 156 (918)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (918)
++....-.+.+-...+++.+...|..+|++++|+.+|+++.+.. ..|+ ..+.+.+..++...+.+++|..+|.
T Consensus 380 i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~ 459 (490)
T 3n71_A 380 GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYH 459 (490)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766544432235588899999999999999999998876421 1122 2234455556666677777777777
Q ss_pred HHHh
Q 043758 157 IMRK 160 (918)
Q Consensus 157 ~~~~ 160 (918)
.+++
T Consensus 460 ~~~~ 463 (490)
T 3n71_A 460 KMRE 463 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00022 Score=72.92 Aligned_cols=129 Identities=11% Similarity=0.007 Sum_probs=64.1
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChh------------------hHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 204 LMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSY------------------TCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------------------~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
..+..+...+.+.|++++|+..|++..+. .|+.. .|..+..++.+.|++++|...+++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556666677777777777777776654 23322 56666667777777777777777776
Q ss_pred hCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHH-HHhcCChhHHHHHHHHHHh
Q 043758 266 DWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDA-LYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~ 336 (918)
+.. +.+...+..+..+|...|++++|...|+...+.. +.+...+..+... ....+..+++...|..|..
T Consensus 258 ~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 258 TEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 654 3456677777777777777777777777776544 2334444444444 2234455666666666654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00016 Score=60.16 Aligned_cols=80 Identities=9% Similarity=-0.012 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHH
Q 043758 79 EDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIM 158 (918)
Q Consensus 79 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (918)
+.|+..|+.+++.++. +...+..+..+|...|++++|+..|+++.... +.+...|..+..++...|++++|+..|+..
T Consensus 2 ~~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3577788888887654 67788889999999999999999999988776 456678888889999999999999999988
Q ss_pred Hh
Q 043758 159 RK 160 (918)
Q Consensus 159 ~~ 160 (918)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00056 Score=58.91 Aligned_cols=110 Identities=10% Similarity=-0.029 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChhhHH
Q 043758 775 EIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCA----NCLSIPAF 850 (918)
Q Consensus 775 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~ 850 (918)
++++|+..|++..+.| .|+.. +...|...+.+++|.+.+++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555443 11211 4444444445555555555554432 33444444444444 45555666
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 043758 851 NMFKEMIVHDHVPCLSNCNWLLNILCQ----EKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 895 (918)
..+++..+.+ ++.++..|+.+|.. .+++++|...+++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655543 34555666666666 666666666666666655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0011 Score=68.34 Aligned_cols=124 Identities=9% Similarity=-0.074 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 043758 506 AIYDAIIGHLCKEKRILEAEDMFKRMLKA---------------GIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENS 570 (918)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 570 (918)
..+..+...+.+.|++++|+..|++..+. --+.+...|..+..+|.+.|++++|+..+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 44677788899999999999999998861 012345678888888999999999999999998764
Q ss_pred CCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043758 571 VQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASR 631 (918)
Q Consensus 571 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 631 (918)
+.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++.+.++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356778888888999999999999999988763 3467777777777777777766654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00027 Score=58.16 Aligned_cols=87 Identities=7% Similarity=-0.083 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCC------cccHH
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPC------LSNCN 869 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~ 869 (918)
..+..+...+...|++++|+..+++..+. .+.+...+..+..++.+.|++++|...+++.+... |.+ ...+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHH
Confidence 33444444444455555555555444432 11233344444445555555555555555554443 333 33444
Q ss_pred HHHHHHHhcCCHHHH
Q 043758 870 WLLNILCQEKHFHEA 884 (918)
Q Consensus 870 ~l~~~~~~~g~~~~A 884 (918)
.++.++...|++++|
T Consensus 83 ~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 83 RLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhHhhh
Confidence 444444444444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0018 Score=55.64 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=25.4
Q ss_pred cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHhcC
Q 043758 181 NIRTVEAESFAREMESQGFYVDKLMYTSLINGYCS----NRNMKMAMRLFFRMLKTG 233 (918)
Q Consensus 181 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 233 (918)
.+++++|...|++..+.| ++..+..|...|.. .+++++|..+|++..+.|
T Consensus 74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 344555555555544442 34445555555554 555555555555555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00068 Score=56.23 Aligned_cols=80 Identities=10% Similarity=0.029 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 043758 778 QAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMI 857 (918)
Q Consensus 778 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 857 (918)
+|+..|+++.+.. +.+...+..+..+|...|++++|+..+++..+.. +.+...|..+..++...|++++|...+++.+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666542 1245666677777777777777777777766531 2244566666667777777777777777766
Q ss_pred hC
Q 043758 858 VH 859 (918)
Q Consensus 858 ~~ 859 (918)
..
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.001 Score=52.15 Aligned_cols=81 Identities=9% Similarity=0.050 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 043758 796 TVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNIL 875 (918)
Q Consensus 796 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (918)
..+..+...+...|++++|+..+++..+.. +.+...+..+..++.+.|++++|...+++..... |.+...+..++.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555554321 2233445555555555566666666655555544 44555555555555
Q ss_pred Hhc
Q 043758 876 CQE 878 (918)
Q Consensus 876 ~~~ 878 (918)
.+.
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0012 Score=52.97 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHh
Q 043758 794 DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIV 858 (918)
Q Consensus 794 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 858 (918)
+...+..+..+|...|++++|+..+++..+. .| +...|..+..+|...|++++|...+++.+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555666666666666666666665542 23 334555555566666666666666665543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0022 Score=52.57 Aligned_cols=62 Identities=19% Similarity=0.088 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 726 YLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNA 788 (918)
Q Consensus 726 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 788 (918)
..+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344445555555555555555555555431 12333444455555555555555555555554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00084 Score=53.87 Aligned_cols=64 Identities=8% Similarity=-0.013 Sum_probs=43.5
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
++.++..+..+|...|++++|+..|+++++.. +.+..+|..+..++...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566667777777777777777777776665 44555667777777777777777777776654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.014 Score=55.53 Aligned_cols=82 Identities=11% Similarity=-0.009 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHhcCCCCCC---cccHHHHHHHHhc-----cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC-CC
Q 043758 148 LDEVLEVVNIMRKKKGLVPA---LHPYKSLFYALCK-----NIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSN-RN 218 (918)
Q Consensus 148 ~~~A~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~ 218 (918)
...|...+++..+ +.|+ -..|..+...|.+ .|+.++|++.|++..+.++.-+..++......++.. |+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 3444444444444 2333 2344444444444 255555555555555543322344455555555542 55
Q ss_pred hHHHHHHHHHHHhc
Q 043758 219 MKMAMRLFFRMLKT 232 (918)
Q Consensus 219 ~~~A~~~~~~m~~~ 232 (918)
.+.+.+.+++....
T Consensus 256 ~~~a~~~L~kAL~a 269 (301)
T 3u64_A 256 RAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcC
Confidence 55555555555544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.95 E-value=1.4e-05 Score=80.36 Aligned_cols=233 Identities=11% Similarity=0.103 Sum_probs=139.4
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHH
Q 043758 202 DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMIS 281 (918)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 281 (918)
.+..|..|..++...+...+|++.|-+. -|...|..++.+..+.|.+++-..++.-..+. ..++..-+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 4567888888888888888777765322 24456778888888888888888887766654 334455667888
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHhhCCCCccHHH
Q 043758 282 NYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLSFILLKNCPEGTELQH 361 (918)
Q Consensus 282 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 361 (918)
+|++.++..+-++++. .||..-...+.+-|...|.++.|.-+|..+-. |..+...+...+++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 8888888766554432 47777777888888888888888777754421 1111112222222221
Q ss_pred HHHHHHHHHhcCCCCChhhhHHHhhcCCCCChHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 043758 362 ALMLLCEFAKIGCGIDPLARSISATLNPTGDLCQEIELLLRKIVKSDPKLANVAFTIYISALCKGGKYEKAYVCLFQLVN 441 (918)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 441 (918)
|... ..-..++.+|..+..+|...+.+.-|.-+--.++-
T Consensus 189 AVda-----------------------------------------ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv 227 (624)
T 3lvg_A 189 AVDG-----------------------------------------ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV 227 (624)
T ss_dssp STTT-----------------------------------------TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC
T ss_pred HHHH-----------------------------------------HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc
Confidence 1100 00112235666666677776666655544433331
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 043758 442 FGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPKPSVAIYDAIIGHLCKEKRI 521 (918)
Q Consensus 442 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 521 (918)
.|| .+..++. .|-..|-+++-+.+++..... -.....+|+-|.-.|++- ++
T Consensus 228 ---had--eL~elv~----------------------~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 228 ---HAD--ELEELIN----------------------YYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp ---CSS--CCSGGGS----------------------SSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CT
T ss_pred ---cHH--HHHHHHH----------------------HHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CH
Confidence 122 1222333 355667777777777777643 234677888888777775 44
Q ss_pred HHHHHHH
Q 043758 522 LEAEDMF 528 (918)
Q Consensus 522 ~~a~~~~ 528 (918)
++..+-+
T Consensus 279 eKlmEHl 285 (624)
T 3lvg_A 279 QKMREHL 285 (624)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 4444333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0049 Score=48.07 Aligned_cols=61 Identities=16% Similarity=0.323 Sum_probs=28.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 205 MYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSD 266 (918)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 266 (918)
.+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44444445555555555555555544432 11233444444444444455555444444444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0038 Score=48.74 Aligned_cols=70 Identities=6% Similarity=-0.104 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHccCC---hhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043758 827 VPKKATYEHLLECFCANCL---SIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 827 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 897 (918)
+++...+..+..+++..++ .++|...+++.+..+ |.+..+...++..+.+.|++++|...|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566677777777765554 688999999998887 888899999999999999999999999999887744
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.015 Score=57.94 Aligned_cols=72 Identities=8% Similarity=-0.051 Sum_probs=49.0
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHH
Q 043758 202 DKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDL 277 (918)
Q Consensus 202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (918)
+..+|.++...+...|++++|...++++...+ |+...|..+...+...|++++|.+.+++.... .|...+|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 56667666666666677777777777777763 56666666666777777777777777777765 34444543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0002 Score=72.27 Aligned_cols=214 Identities=15% Similarity=0.138 Sum_probs=139.4
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLF 175 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 175 (918)
.+..|..+.++....+++.+|++.|=+ . -|+..|..++.+..+.|.+++-++.+...++ . .-+...-+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~--~ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-T--CCSTTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-H--hcccccHHHHH
Confidence 455899999999999999999877633 2 3666899999999999999999999998876 3 33445566899
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc-------------------C-CC
Q 043758 176 YALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT-------------------G-CE 235 (918)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------~-~~ 235 (918)
-+|++.++..+.+.++. .|+..-...+..-+...|.++.|.-+|..+..- - --
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988766443321 245555556666666666666665555432210 0 02
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHH
Q 043758 236 PDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLI 315 (918)
Q Consensus 236 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 315 (918)
-++.||-.+-.+|...+.+..|.-.=-.++-. +| -...++..|-..|-+++-+.+++.-.... +...-.|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 34567888888888888877765544333322 11 11235566778888888888887766322 34455666666
Q ss_pred HHHHhcCChhHHHHHHH
Q 043758 316 DALYKHNRLMEVDELYK 332 (918)
Q Consensus 316 ~~~~~~g~~~~a~~~~~ 332 (918)
-.|++- ++++..+.++
T Consensus 271 ILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLE 286 (624)
T ss_dssp HHHHSS-CTTHHHHHHT
T ss_pred HHHHhc-CHHHHHHHHH
Confidence 555543 4555555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0078 Score=62.95 Aligned_cols=86 Identities=5% Similarity=-0.101 Sum_probs=52.4
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCC---C-HHHHHHHHHHHHHcCChhHHHHHHHHHHhC-----C-CCCCH-HHHHHHH
Q 043758 772 AAGEIDQAIGLFNQMNAD---GCVP---D-KTVYNTLLKGLCQAGRLSHVFSVFYSMHKR-----G-FVPKK-ATYEHLL 837 (918)
Q Consensus 772 ~~g~~~~A~~~~~~~~~~---~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~l~ 837 (918)
..|++++|+.++++.++. -+.| + ..+++.+..+|...|++++|..++++..+. | -.|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356788888888776653 1122 2 366777888888888888888888776521 1 11222 2455555
Q ss_pred HHHHccCChhhHHHHHHHHH
Q 043758 838 ECFCANCLSIPAFNMFKEMI 857 (918)
Q Consensus 838 ~~~~~~~~~~~A~~~~~~~~ 857 (918)
..|..+|++++|+.++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 56666666666666665554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.006 Score=48.57 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=39.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHhhchhcHHHHHHHHHHHhhcC
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKL-ACVSILRGLFAEEKFLEAFDYFIKICNAG 127 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 127 (918)
.+.|++++|...|+.+++.++. +.. ++..+..+|...|++++|+..|+++.+..
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5667777777777777776543 455 77777777777888888888888777664
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0044 Score=64.79 Aligned_cols=70 Identities=9% Similarity=-0.010 Sum_probs=54.9
Q ss_pred ccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhh
Q 043758 46 GSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICN 125 (918)
Q Consensus 46 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 125 (918)
.+++.+..++...|++++|+.++ +.|+.+++...-.+.+-...+++.+...|..+|++++|+.+|+++.+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~----------~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYG----------QKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH----------HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHH----------HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 57888888888888888888886 55677777665443222345889999999999999999999998764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0044 Score=49.41 Aligned_cols=54 Identities=15% Similarity=0.227 Sum_probs=25.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 769 GHIAAGEIDQAIGLFNQMNADGCVPDKT-VYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 769 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
.+...|++++|+..|+++++.. +.+.. .|..+..+|...|++++|...+++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555555555554431 11233 444455555555555555555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.017 Score=57.62 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=53.5
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHH
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYK 172 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 172 (918)
++.+|.++.-.+...|++++|+..+++++..+ |+...|..+...+.-.|++++|.+.|++... +.|...+|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~~ 347 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChHH
Confidence 56677777666777788888888888888775 5666666777777788888888888888876 455555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0052 Score=64.42 Aligned_cols=70 Identities=10% Similarity=0.108 Sum_probs=54.4
Q ss_pred ccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhh
Q 043758 46 GSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICN 125 (918)
Q Consensus 46 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 125 (918)
.+++.+..++...|++++|+.++ +.++.+++...-.+.+-...+++.+...|..+|++++|+.+|+++.+
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~----------~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYG----------TRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHH----------HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHH----------HHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56788888888888888888886 55677777665433222345888999999999999999999998764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.019 Score=48.75 Aligned_cols=84 Identities=10% Similarity=0.025 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChhhH
Q 043758 775 EIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAG---RLSHVFSVFYSMHKRGFVP--KKATYEHLLECFCANCLSIPA 849 (918)
Q Consensus 775 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A 849 (918)
....+.+.|.+..+.+. ++..+.-.+..++++.+ +.++++.++++..+.. .| ....+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 44556666666655443 56666666777777766 5557777777776542 24 233444445566777777777
Q ss_pred HHHHHHHHhCC
Q 043758 850 FNMFKEMIVHD 860 (918)
Q Consensus 850 ~~~~~~~~~~~ 860 (918)
.+.++.+++..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 77777777664
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.023 Score=59.58 Aligned_cols=91 Identities=9% Similarity=-0.017 Sum_probs=65.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--C-CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhC-----C-CCCCH-HH
Q 043758 767 INGHIAAGEIDQAIGLFNQMNAD--G-CVPD----KTVYNTLLKGLCQAGRLSHVFSVFYSMHKR-----G-FVPKK-AT 832 (918)
Q Consensus 767 i~~~~~~g~~~~A~~~~~~~~~~--~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~ 832 (918)
+..+...|++++|+.++++.++. . +.|+ ..+++.+..+|...|++++|+.++++..+. | ..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999999999988764 1 2222 367888888999999999999998877631 1 12222 25
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHH
Q 043758 833 YEHLLECFCANCLSIPAFNMFKEMI 857 (918)
Q Consensus 833 ~~~l~~~~~~~~~~~~A~~~~~~~~ 857 (918)
++.|...|..+|++++|+.++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7777778888888888888888775
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.05 Score=42.30 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=41.6
Q ss_pred hHHhhhhhhhHhcCC---hHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC
Q 043758 63 SALLLYQNDFVALGN---IEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAG 127 (918)
Q Consensus 63 ~a~~~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 127 (918)
+++..++.++...++ .++|..+|+++++.++. ++.++..+...+.+.|++++|+..|+++.+..
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 333344444433333 56777777777777654 56677777777777778888887777777664
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.52 Score=38.29 Aligned_cols=148 Identities=9% Similarity=0.052 Sum_probs=88.0
Q ss_pred hHHHHHHHH--HccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 043758 727 LYNDIFLLL--CGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDK-TVYNTLLK 803 (918)
Q Consensus 727 ~~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~ 803 (918)
+...|+++- .-.|..++..++..+...+. +..-||-+|--....-+=+-..++++.+-+. +..+. .....++.
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FDis~C~NlKrVi~ 82 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLDKCQNLKSVVE 82 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGGGCSCTHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh-cCcHhhhcHHHHHH
Confidence 444555432 34577777777777776642 3333444433233333333334444443332 11111 11223333
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 043758 804 GLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHE 883 (918)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 883 (918)
+|...|. +....+..+..+..+|.-+.-.+++..+.... +|+++....++.+|.+.|+..+
T Consensus 83 C~~~~n~------------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~ 143 (172)
T 1wy6_A 83 CGVINNT------------------LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERD 143 (172)
T ss_dssp HHHHTTC------------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcc------------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhh
Confidence 3433332 22334445566788888888888888876654 8899999999999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 043758 884 AQIVLDVMHKRGRL 897 (918)
Q Consensus 884 A~~~~~~~~~~~~~ 897 (918)
|.+++.+.-++|+.
T Consensus 144 a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 144 ATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhH
Confidence 99999999999864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.24 Score=57.68 Aligned_cols=98 Identities=10% Similarity=0.058 Sum_probs=59.6
Q ss_pred CCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHH
Q 043758 703 NGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGL 782 (918)
Q Consensus 703 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 782 (918)
.|+++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+....+
T Consensus 665 ~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 665 VGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 36666666665432 3567888888888888888888888887642 23344445556666665555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 043758 783 FNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSM 821 (918)
Q Consensus 783 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 821 (918)
-+.....| .++....+|...|++++|++++.++
T Consensus 730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 55544432 1233344455666666666665443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=1.3 Score=48.25 Aligned_cols=78 Identities=6% Similarity=-0.003 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043758 544 TTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRA 623 (918)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 623 (918)
+..+..+.+.+++...+.++.. .+.+...-.....+....|+..+|....+.+-..| ...+.....++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 4445566677777766654432 13344444556677777888777777777766654 33445666777777766
Q ss_pred CCHH
Q 043758 624 GEFE 627 (918)
Q Consensus 624 g~~~ 627 (918)
|...
T Consensus 150 g~lt 153 (618)
T 1qsa_A 150 GKQD 153 (618)
T ss_dssp TCSC
T ss_pred CCCC
Confidence 6543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.54 Score=44.87 Aligned_cols=95 Identities=11% Similarity=0.025 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHHhhcCCC-CcchhHHHHHHHHHcC-----CChhHHHHHHHHHHhcCCCCC--CcccHHHHHHHHhcc-C
Q 043758 112 KFLEAFDYFIKICNAGVD-LNCWSYNVLIDGLCYK-----GFLDEVLEVVNIMRKKKGLVP--ALHPYKSLFYALCKN-I 182 (918)
Q Consensus 112 ~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~-g 182 (918)
....|...++++++.... .+-..|..+...|... |+.++|.+.|++.++ +.| +..++......++.. |
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcC
Confidence 466667777777666421 1234666677777663 777777777777776 334 255556666666663 7
Q ss_pred chHHHHHHHHHHHhCCCC--CChhhHHHH
Q 043758 183 RTVEAESFAREMESQGFY--VDKLMYTSL 209 (918)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~--~~~~~~~~l 209 (918)
+.+++.+.+++.....+. |+....|.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 777777777777776554 444444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.074 Score=43.33 Aligned_cols=82 Identities=12% Similarity=0.051 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhh---HHHHHHHHHhCCCCC--CcccHHHHHHHHHhcCCHHHHHH
Q 043758 812 SHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIP---AFNMFKEMIVHDHVP--CLSNCNWLLNILCQEKHFHEAQI 886 (918)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 886 (918)
..+.+-+.+....| .|+..+--.+.+++.++.+..+ ++.+++.+...+ .| .....+.|+.++.+.|+|++|++
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444444333322 2555555556666666665444 666666665543 22 34456666666666677777666
Q ss_pred HHHHHHhCC
Q 043758 887 VLDVMHKRG 895 (918)
Q Consensus 887 ~~~~~~~~~ 895 (918)
.++.+++..
T Consensus 96 ~~~~lL~~e 104 (126)
T 1nzn_A 96 YVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 666666654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.18 E-value=1 Score=36.61 Aligned_cols=140 Identities=10% Similarity=0.016 Sum_probs=78.3
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCC
Q 043758 423 LCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPK 502 (918)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 502 (918)
+.-.|..++..++..+..+. .+..-++.+|-.....-+-+-..+.++.+-+.-....++++......+-.+-.
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~---- 89 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT---- 89 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC----
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcc----
Confidence 34467888888888887763 34555666665555444444444444444444444455555555555544321
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 043758 503 PSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSV 571 (918)
Q Consensus 503 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 571 (918)
+.......+..+...|+-+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 90 -~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 -LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred -hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3334455555666666666666666664332 245555555666666666666666666666665554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.08 E-value=1.3 Score=38.61 Aligned_cols=131 Identities=11% Similarity=0.031 Sum_probs=86.4
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 043758 174 LFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGL 253 (918)
Q Consensus 174 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 253 (918)
-+....+.|+++.|.++.+++ . +...|..|.......|+++-|.+.|.+.. | +..+.-.|...|+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l--~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D---~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL--N----DSITWERLIQEALAQGNASLAEMIYQTQH------S---FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH--C----CHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C---HHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHh--C----CHHHHHHHHHHHHHcCChHHHHHHHHHhC------C---HHHHHHHHHHhCC
Confidence 445566788888888887765 1 67889999999999999999999988754 2 3344445666788
Q ss_pred hhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 043758 254 FDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKK 333 (918)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (918)
.++-..+-+.....| -++.....+.-.|+++++.++|.+..+ |..-.-..-..|..+.|.++..+
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHH
Confidence 777666666655554 234445556678888888888865442 11111122224566677777665
Q ss_pred H
Q 043758 334 M 334 (918)
Q Consensus 334 ~ 334 (918)
+
T Consensus 141 ~ 141 (177)
T 3mkq_B 141 A 141 (177)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.11 Score=44.14 Aligned_cols=80 Identities=10% Similarity=-0.047 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh---cHHHHHHHHHHHhhcCCCC--cchhHHHHHHHHHcCCChhHHHH
Q 043758 79 EDALRHFDRLISKNIVPIKLACVSILRGLFAEE---KFLEAFDYFIKICNAGVDL--NCWSYNVLIDGLCYKGFLDEVLE 153 (918)
Q Consensus 79 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 153 (918)
..+.+.|.+....+. ++..+...+..++++.+ ++++++.+++...+.+ .| +...+..+.-++.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 455666776666554 57777777777887766 7778999998888775 23 45677777788888999999999
Q ss_pred HHHHHHh
Q 043758 154 VVNIMRK 160 (918)
Q Consensus 154 ~~~~~~~ 160 (918)
.++.+.+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998887
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.63 Score=54.15 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=103.1
Q ss_pred hhchhcHHHHHH-HHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchH
Q 043758 107 LFAEEKFLEAFD-YFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTV 185 (918)
Q Consensus 107 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 185 (918)
....+++++|.+ ++.. ++ +......++..+.+.|..+.|+++.+.-.. -+......|+++
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~-------------~f~~~l~~~~~~ 669 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQDQ-------------KFELALKVGQLT 669 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCHHH-------------HHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCcch-------------heehhhhcCCHH
Confidence 345678888866 4421 11 122347777888888999888876543221 234456779999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043758 186 EAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMS 265 (918)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 265 (918)
+|.++.+.+ .+...|..|...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 998885433 2678999999999999999999999998752 3445555556777777666666665
Q ss_pred hCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043758 266 DWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKV 300 (918)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 300 (918)
..| -++.....|.+.|++++|.+++.++.
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 544 12334455667788888877776554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.14 Score=40.98 Aligned_cols=61 Identities=11% Similarity=-0.051 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhC
Q 043758 799 NTLLKGLCQAGRLSHVFSVFYSMHKR------GFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVH 859 (918)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 859 (918)
..+...+.+.|++..|...++...+. +-.+....+..+..++.+.|+++.|...+++++..
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34444555555555555555444321 01123334555555555555555555555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.14 Score=40.89 Aligned_cols=65 Identities=11% Similarity=0.087 Sum_probs=43.6
Q ss_pred ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcC------CCCcchhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 96 IKLACVSILRGLFAEEKFLEAFDYFIKICNAG------VDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
+..-+..++..+...|++..|+.+|+.+.+.. ..+....+..+..++.+.|+++.|+..++.+.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33455577777777788888888777766431 123445667777777777777777777777765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.06 E-value=1.4 Score=38.43 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=80.7
Q ss_pred HHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHH
Q 043758 212 GYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDA 291 (918)
Q Consensus 212 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 291 (918)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 456789999999998765 2667899999999999999999999998753 3455666778899888
Q ss_pred HHHHHHHHhhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 043758 292 ALMLLNSKVSSNLAPSVHCYTVLIDALYKHNRLMEVDELYKKM 334 (918)
Q Consensus 292 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 334 (918)
-..+-+.....| -++....++...|+++++.++|.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 877776666544 3566777888899999999998554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.93 E-value=0.25 Score=41.20 Aligned_cols=100 Identities=10% Similarity=-0.008 Sum_probs=46.8
Q ss_pred cHHhHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCH-HHHHHHHHH------HHHcCChhHHHHHHHHHHhCC
Q 043758 759 NQVTFCILINGHIAAGEI------DQAIGLFNQMNADGCVPDK-TVYNTLLKG------LCQAGRLSHVFSVFYSMHKRG 825 (918)
Q Consensus 759 ~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~p~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~ 825 (918)
|..+|...+....+.|++ ++.+++|++.... ++|+. ..|...+.. +...++.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445666666666666777 6667777766664 44532 111111111 122345555555555554321
Q ss_pred CCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCC
Q 043758 826 FVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 826 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 860 (918)
-.- ...|-....=-.++|+...|.+++.+.+..+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 111 3333333333334445555555555544443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.92 E-value=1.2 Score=37.23 Aligned_cols=60 Identities=12% Similarity=-0.043 Sum_probs=47.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHH
Q 043758 587 KKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIA 647 (918)
Q Consensus 587 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 647 (918)
..+++++|.++|+.+++.+ .--..+|......-.+.|+...|.+++.+.+..+.+|....
T Consensus 72 ei~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HhcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 3478999999999987652 22377888888888899999999999999998776665433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.87 E-value=0.53 Score=38.36 Aligned_cols=67 Identities=7% Similarity=-0.056 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHcCChhH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChhhHHHHHHHHHhCC
Q 043758 793 PDKTVYNTLLKGLCQAGRLSH---VFSVFYSMHKRGFVP--KKATYEHLLECFCANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 793 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 860 (918)
|+..+--.+..++++.....+ ++.++++..+.+ .| .....-.+.-++.+.|++.+|.+.++.+++..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 344444444445555444333 555555554321 12 11122223334555555555555555555543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.58 E-value=22 Score=40.51 Aligned_cols=153 Identities=12% Similarity=0.008 Sum_probs=66.1
Q ss_pred ccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C-----CcHHHHHHHHHHHHc
Q 043758 482 KWGNLDSALDILDQMEVRGPKPS--VAIYDAIIGHLCKEKRILEAEDMFKRMLKAGI--D-----PDEVFFTTMINGYLQ 552 (918)
Q Consensus 482 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~~~~~~ 552 (918)
..|+.++++.++......+...+ ...-..+.-+....|..+++.+++.......- . +....-..+.-+..-
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 44566666666665543211112 22333334445555555566776666554210 0 111111222222222
Q ss_pred CCC-hHHHHHHHHHHHhCCCCCCchhHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHH
Q 043758 553 NRK-PIEACQLFEKMKENSVQPGSYPYT--ALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINH--FLRAGEFE 627 (918)
Q Consensus 553 ~~~-~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~ 627 (918)
.|. -+++.+.+..+.... .+...... ++...+...|+.+....++..+.+.. +..+...+..+ +.-.|+.+
T Consensus 466 ~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 466 MGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp TTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGG
T ss_pred cCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChH
Confidence 332 245555555555432 11111111 22223345566666666666655431 22233333333 33556666
Q ss_pred HHHHHHHHHHH
Q 043758 628 FASRLENLMVT 638 (918)
Q Consensus 628 ~a~~~~~~~~~ 638 (918)
.+..+.+.+..
T Consensus 542 ~~~~li~~L~~ 552 (963)
T 4ady_A 542 LADDLITKMLA 552 (963)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666666543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.53 E-value=0.25 Score=50.86 Aligned_cols=76 Identities=9% Similarity=-0.029 Sum_probs=52.4
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCcccchhhhc
Q 043758 834 EHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHK-----RGRLPCTSTRGFWRK 908 (918)
Q Consensus 834 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~~ 908 (918)
..++.++...|++.+|...+..+.... |-+-..|..++.+|.+.|+..+|.+.|+++.+ .|++|+..+..+.+.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 344555667777777777777776655 66666777777777777777777777777644 477777777666655
Q ss_pred cc
Q 043758 909 HF 910 (918)
Q Consensus 909 ~~ 910 (918)
.+
T Consensus 254 il 255 (388)
T 2ff4_A 254 IL 255 (388)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.80 E-value=1.2 Score=36.35 Aligned_cols=68 Identities=4% Similarity=-0.064 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHccCCh---hhHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 827 VPKKATYEHLLECFCANCLS---IPAFNMFKEMIVHDHVP-CLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 827 ~p~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.|+..+--.+.+++.++.+. .+++.+++.+.+.+ |. ....++.|+.++.+.|+|++|++..+.+++..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 44555555555555555543 23555555555443 22 24455666666666666666666666665544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.52 E-value=2.6 Score=35.01 Aligned_cols=69 Identities=9% Similarity=-0.066 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCC
Q 043758 792 VPDKTVYNTLLKGLCQAGR---LSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 792 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 860 (918)
.|+..+--.+..++++... ..+++.+++++.+.+-.-....+-.+.-++++.|++.+|.+..+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4455555555556665553 33455666665542211122223333345666666666666666666654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.41 E-value=2.2 Score=47.45 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=28.1
Q ss_pred ccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 043758 842 ANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVM 891 (918)
Q Consensus 842 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 891 (918)
..|+++.|+++.++..... |.+..+|..|+.+|.+.|+|+.|+-.++.+
T Consensus 349 ~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 349 NRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4455555666555555543 445556666666666666666665555554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.12 E-value=1.5 Score=37.59 Aligned_cols=70 Identities=9% Similarity=0.010 Sum_probs=32.0
Q ss_pred cCCCCCh--hhHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCcH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 719 IEFMPNL--YLYNDIFLLLCGVGRMDDAYDHFQMMKRE-GLRPNQ-------VTFCILINGHIAAGEIDQAIGLFNQMNA 788 (918)
Q Consensus 719 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 788 (918)
.|..|.. ..+..-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...|++..|...|++.++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4444432 33344445555666666666655554332 112221 1334455566666666666666666544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.35 E-value=7.3 Score=39.91 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHH-----hCCCCCCcccHHHHHH
Q 043758 799 NTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMI-----VHDHVPCLSNCNWLLN 873 (918)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~~~~~l~~ 873 (918)
..++..+...|++.+|+..+..+... -+-+...+..++.++.+.|+..+|+..|+++. +.|+.|.+..-...-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34555666667777777666666542 12355666777777777777777776666653 3466666655544444
Q ss_pred HHHhcCCHH------HHHHHHHHHHhCCCC
Q 043758 874 ILCQEKHFH------EAQIVLDVMHKRGRL 897 (918)
Q Consensus 874 ~~~~~g~~~------~A~~~~~~~~~~~~~ 897 (918)
++....... .+..+...+.+....
T Consensus 254 il~~~~~~~~~~~~~~l~~i~~~L~~~~~~ 283 (388)
T 2ff4_A 254 ILRQQPLDAKKSAKTTAAGTVTVLDQRTMA 283 (388)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHHHHHHBCT
T ss_pred HHcCCCCCCCCCCccccchhhhHhhccccc
Confidence 444322211 344455555444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.43 E-value=21 Score=37.29 Aligned_cols=190 Identities=11% Similarity=0.144 Sum_probs=115.2
Q ss_pred CChhHHHHHHHHHHhc-----CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCcHHh--HHHHHHHHHhcCC
Q 043758 704 GKKGTVQKIVLKVKDI-----EFMPNLYLYNDIFLLLCGVGRMDDAYDHFQMMKRE-GLRPNQVT--FCILINGHIAAGE 775 (918)
Q Consensus 704 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~--~~~li~~~~~~g~ 775 (918)
|+++.|.+.+..+.+. ...-.......++..|...|+++...+.+..+... |..+...+ .+.++.-......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5666776666555432 22234566778889999999999988887766543 33333222 1222222222333
Q ss_pred HHH--HHHHHHHHHhC--C-CCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHh--CCCCCCH---HHHHHHHHHHHc
Q 043758 776 IDQ--AIGLFNQMNAD--G-CVP---DKTVYNTLLKGLCQAGRLSHVFSVFYSMHK--RGFVPKK---ATYEHLLECFCA 842 (918)
Q Consensus 776 ~~~--A~~~~~~~~~~--~-~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~~---~~~~~l~~~~~~ 842 (918)
.+. -..+.+.+... | +-. .......|...|...|++.+|..++.++.. .|..+.. ..+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 222 22222222111 1 111 123345678889999999999999998863 2322222 245555667889
Q ss_pred cCChhhHHHHHHHHH----hCCCCCC--cccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043758 843 NCLSIPAFNMFKEMI----VHDHVPC--LSNCNWLLNILCQEKHFHEAQIVLDVMHK 893 (918)
Q Consensus 843 ~~~~~~A~~~~~~~~----~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 893 (918)
.+++..|..+++++. ....+|+ ...+...+..+...++|.+|.+.|..+.+
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999888863 2221232 34567888899999999999988887754
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.18 E-value=0.94 Score=38.80 Aligned_cols=129 Identities=13% Similarity=0.021 Sum_probs=70.8
Q ss_pred cCCCCcHH--hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 754 EGLRPNQV--TFCILINGHIAAGEIDQAIGLFNQMNAD-GCVPDK-------TVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 754 ~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
.|+.|... .+..-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...|++.+|...|++...
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45556543 3334456778889999999888876654 233431 3566777888999999999999988653
Q ss_pred C-CCCCCHH-HHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 824 R-GFVPKKA-TYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 824 ~-~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
. ...|... +...+.. ...... ....+.+.+.-+.++.+|.+.|++++|..+++.+....
T Consensus 92 ~~k~l~k~~s~~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred HHHHHhcCCCccccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 1 1111111 1100000 000000 01123345667788899999999999999887654333
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.25 E-value=14 Score=30.70 Aligned_cols=71 Identities=8% Similarity=0.054 Sum_probs=39.0
Q ss_pred CcHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 043758 758 PNQVTFCILINGHIAAGE---IDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKK 830 (918)
Q Consensus 758 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 830 (918)
|+..+-..+..++.++.+ ..+++.+++.+...+..-...+...+.-++.+.|++++|.++.+.+.+ +.|+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 444444445555555543 335566666665542222335555556666677777777777776665 45544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.71 E-value=41 Score=35.05 Aligned_cols=267 Identities=10% Similarity=0.037 Sum_probs=137.0
Q ss_pred CChHHHHHHHHHHHhC-----CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043758 554 RKPIEACQLFEKMKEN-----SVQPGSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEF 628 (918)
Q Consensus 554 ~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 628 (918)
++++.|++.+..+.+. +..........++..|...|+++...+.+.-+....... ......+++.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~-------- 100 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKV-------- 100 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHH--------
Confidence 5677777776655432 223344556677777777888877777666655442121 11112222211
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHhhhcccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhH
Q 043758 629 ASRLENLMVTNQIEFDLIAYIALVSGVCRRITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGT 708 (918)
Q Consensus 629 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 708 (918)
...+... ..++..+...++........ ...+.... -.+....+...+...|++.+
T Consensus 101 -~~~l~~~----~~~d~~~~~~~i~~l~~vte-~kiflE~e-------------------rarl~~~La~i~e~~g~~~e 155 (445)
T 4b4t_P 101 -MEYLKSS----KSLDLNTRISVIETIRVVTE-NKIFVEVE-------------------RARVTKDLVEIKKEEGKIDE 155 (445)
T ss_dssp -HHHHHHH----CTTHHHHHHHHHHCCSSSSS-CCCCCCHH-------------------HHHHHHHHHHHHHHHTCHHH
T ss_pred -HHHHhcC----CchhHHHHHHHHHHHHHHhc-cchHHHHH-------------------HHHHHHHHHHHHHHccCHHH
Confidence 1111111 12233344444433221110 00000000 00112345667778899999
Q ss_pred HHHHHHHHHhc--CCCCC---hhhHHHHHHHHHccCChhHHHHHHHHHHH----cCCCCcH--HhHHHHHHHHHhcCCHH
Q 043758 709 VQKIVLKVKDI--EFMPN---LYLYNDIFLLLCGVGRMDDAYDHFQMMKR----EGLRPNQ--VTFCILINGHIAAGEID 777 (918)
Q Consensus 709 a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~~--~~~~~li~~~~~~g~~~ 777 (918)
|.+++..+... +..+. +..+...+..|...+++..|..++.++.. ....|+. ..+...+..+...+++.
T Consensus 156 A~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~ 235 (445)
T 4b4t_P 156 AADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYL 235 (445)
T ss_dssp HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999987632 21121 35667777888899999999988887642 2222222 24455666677888999
Q ss_pred HHHHHHHHHHhC-CCCCCHHHH----HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc--CChhhHH
Q 043758 778 QAIGLFNQMNAD-GCVPDKTVY----NTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCAN--CLSIPAF 850 (918)
Q Consensus 778 ~A~~~~~~~~~~-~~~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~A~ 850 (918)
+|-..|.++... ...-+...+ ..++.+..-++....-..++.........++...+..++.+|... .+++.+.
T Consensus 236 ~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~ 315 (445)
T 4b4t_P 236 EVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQ 315 (445)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHH
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHH
Confidence 998888777653 111233222 222233333443333344444433322335566777777775432 2344444
Q ss_pred HHHH
Q 043758 851 NMFK 854 (918)
Q Consensus 851 ~~~~ 854 (918)
+.+.
T Consensus 316 ~~~~ 319 (445)
T 4b4t_P 316 KTYE 319 (445)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 4443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.64 E-value=8.7 Score=42.80 Aligned_cols=127 Identities=11% Similarity=0.037 Sum_probs=69.3
Q ss_pred HHHHHHhccCc-hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC-ChHHHHHHHHHHHhc------CCCCChh-----
Q 043758 173 SLFYALCKNIR-TVEAESFAREMESQGFYVDKLMYTSLINGYCSNR-NMKMAMRLFFRMLKT------GCEPDSY----- 239 (918)
Q Consensus 173 ~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~------~~~p~~~----- 239 (918)
+++..+...++ ++.|..+|+++.+..+..+......++..+...+ +--+|.+++.+..+. ..++...
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 34444444555 4778888888887633211112233333333332 223344544443321 1111111
Q ss_pred ------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043758 240 ------TCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKV 300 (918)
Q Consensus 240 ------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 300 (918)
....-...|...|+++.|+.+-++..... +.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11111233556778888888888777663 4456678888888888888888887777764
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=84.14 E-value=53 Score=35.85 Aligned_cols=51 Identities=10% Similarity=-0.088 Sum_probs=31.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHH
Q 043758 512 IGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEK 565 (918)
Q Consensus 512 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 565 (918)
+..+...|....|...+..+... .+......+.......|.++.++.....
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 44566778888888888877753 2333333444445566777766655443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=83.15 E-value=13 Score=30.50 Aligned_cols=71 Identities=8% Similarity=0.054 Sum_probs=34.4
Q ss_pred CcHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 043758 758 PNQVTFCILINGHIAAGE---IDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKK 830 (918)
Q Consensus 758 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 830 (918)
|+..+--.+..++.++.+ ..+++.+++.+...+..-...++..+.-++.+.|++++|.++.+.+.+ +.|+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 333333334444444433 334555555555433111234455555556666666666666666654 34443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.30 E-value=5 Score=30.73 Aligned_cols=48 Identities=8% Similarity=0.120 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 043758 776 IDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 776 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
.=+..+-++.+....+.|++....+.+.+|.+-+++..|+++++-...
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555556666666666666666666666666666665553
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.11 E-value=14 Score=28.30 Aligned_cols=46 Identities=7% Similarity=0.093 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 744 AYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNAD 789 (918)
Q Consensus 744 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 789 (918)
..+-++.+....+-|++....+.+.||.+.+++.-|+++++-++.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3333444444444455555555555555555555555555544443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.17 E-value=45 Score=32.40 Aligned_cols=123 Identities=15% Similarity=-0.001 Sum_probs=62.0
Q ss_pred HHHHHcCCchhHHhhhhhhh---HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHH----HHHHHhh
Q 043758 53 KKLIKFGQSQSALLLYQNDF---VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFD----YFIKICN 125 (918)
Q Consensus 53 ~~l~~~~~~~~a~~~~~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~ 125 (918)
+.....|++=||.+.|+.+. .+++++++|++++-.... .+.+.|+...|-+ +.+...+
T Consensus 21 ~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~ 85 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDL 85 (312)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHH
Confidence 34456677777777777665 556777777777654432 1233344433333 3444445
Q ss_pred cCCCCcchhHHHHHHHHHcCCChh-HHHHHHHHH----HhcCC--CCCCcccHHHHHHHHhccCchHHHHHHH
Q 043758 126 AGVDLNCWSYNVLIDGLCYKGFLD-EVLEVVNIM----RKKKG--LVPALHPYKSLFYALCKNIRTVEAESFA 191 (918)
Q Consensus 126 ~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~----~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 191 (918)
.+++++......++..+.....-+ .=..+.+.+ .+ .+ ...+...+..+...|.+.|++.+|+.-|
T Consensus 86 ~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 86 AEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIK-FSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp TTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHH-TSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 566666666666665554422111 111222222 22 11 1123444555555566666666655544
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.01 E-value=8.6 Score=31.28 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 043758 80 DALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLI 139 (918)
Q Consensus 80 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 139 (918)
+.++-++.+...+..|++....+.++++.+-+++.-|+.+|+-+...- .+....|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 344555555555555666666666666666666666666666555432 22333444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 918 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.5 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.2 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.02 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.98 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.98 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.98 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.98 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.97 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.93 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.91 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.8 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.45 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.41 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.36 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.25 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.25 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.24 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.21 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.19 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.16 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.14 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.12 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.05 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.98 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.98 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.97 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.92 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.86 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.85 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.8 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.79 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.78 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.75 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.74 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.63 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.62 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.61 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.59 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.57 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.54 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.47 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.34 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.29 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.24 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.24 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.99 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.61 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.4 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.23 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.05 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.63 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.2 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.19 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.9 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.59 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.53 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.71 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.72 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.31 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.2e-18 Score=183.71 Aligned_cols=256 Identities=13% Similarity=-0.008 Sum_probs=164.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.+.|++++|.+.|+++++..|. ++.++..++.+|.+.|++++|+..|+++++.. |.+..++..++..+.+.|++++|+
T Consensus 10 ~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~ 87 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccc
Confidence 5678888888888888776644 56677788888888888888888888887765 445667777888888888888888
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
+.+....+ . .+.+..............+....+............. ...............+....+...+.+....
T Consensus 88 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 88 EHYRHALR-L-KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHH-H-CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred cccccccc-c-ccccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhcc
Confidence 88888776 1 2223333333444444445555555555444443222 4444555555566666777777776666654
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHH
Q 043758 233 GCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYT 312 (918)
Q Consensus 233 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 312 (918)
. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++.....+ +.+...+.
T Consensus 165 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 2 2234455666666667777777777777766553 3345566666677777777777777776666544 34455566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 043758 313 VLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
.+...+.+.|++++|...|++..+
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~ 265 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666777777766666654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=3.1e-18 Score=180.67 Aligned_cols=382 Identities=14% Similarity=0.079 Sum_probs=256.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHH
Q 043758 419 YISALCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEV 498 (918)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 498 (918)
+...+.+.|++++|+..|+++.+.. +-+...+..+..++... |++++|...++++.+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~----------------------~~~~~A~~~~~~al~ 61 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQC----------------------RRLDRSAHFSTLAIK 61 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT----------------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc----------------------CCHHHHHHHHHHHHH
Confidence 4456778899999999998888753 22345555555555544 466667777777776
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhH
Q 043758 499 RGPKPSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPY 578 (918)
Q Consensus 499 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 578 (918)
..+. +..++..+..+|.+.|++++|...+....+.. +.+..............+....+........... .......
T Consensus 62 ~~p~-~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 138 (388)
T d1w3ba_ 62 QNPL-LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVR 138 (388)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHH
T ss_pred hCCC-CHHHHHHHHHHhhhhccccccccccccccccc-cccccccccccccccccccccccccccccccccc-ccccccc
Confidence 6443 67788888888999999999999998888764 3344444444445555555555555555544432 2344444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHhhh
Q 043758 579 TALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIEFDLIAYIALVSGVCRR 658 (918)
Q Consensus 579 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 658 (918)
..........+....+...+....... +.+...+..+...+...|++++|...+++..+. .|+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~------------ 203 (388)
T d1w3ba_ 139 SDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFL------------ 203 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCH------------
T ss_pred ccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHh--CcccH------------
Confidence 555556667777777777777776653 446677778888888888999888888887642 22211
Q ss_pred cccccccccccccchhhhHHHHHHhhcCcccccchhhhHHHHHhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 043758 659 ITGRKKWLDVNRCSDSGKEMLFHKLQQGTLVTRTKSTAFSAVFSNGKKGTVQKIVLKVKDIEFMPNLYLYNDIFLLLCGV 738 (918)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 738 (918)
..+......+...|++++|...+....+.. +.+...+..+...+.+.
T Consensus 204 --------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 250 (388)
T d1w3ba_ 204 --------------------------------DAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQ 250 (388)
T ss_dssp --------------------------------HHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred --------------------------------HHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHC
Confidence 112222334444577777777777666543 34556666777777777
Q ss_pred CChhHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 043758 739 GRMDDAYDHFQMMKREGLRPN-QVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSV 817 (918)
Q Consensus 739 g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 817 (918)
|++++|+..|++..+. .|+ ..++..+..++...|++++|++.++..... .+.+...+..+..++...|++++|+..
T Consensus 251 ~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 327 (388)
T d1w3ba_ 251 GLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp TCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHH
Confidence 7788887777777763 343 446666777777777888887777777664 334556677777777777788888777
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 043758 818 FYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKH 880 (918)
Q Consensus 818 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (918)
+++..+ +.| +...+..+..++.+.|++++|...++++++.. |.++.+|..++.+|.+.|+
T Consensus 328 ~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 328 YRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 777765 344 44566667777777778888888777777765 6667777777777777664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.6e-12 Score=130.32 Aligned_cols=224 Identities=12% Similarity=0.022 Sum_probs=177.9
Q ss_pred hhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhH
Q 043758 71 DFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDE 150 (918)
Q Consensus 71 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 150 (918)
.+.+.|++++|...|+.+++.+|. ++.+|..++.++...|++++|+..|.++.+.. +.+...+..++..+...|++++
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 105 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQ 105 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccc
Confidence 348899999999999999998865 67899999999999999999999999999876 5577889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCccc----------------HHHHHHHHhccCchHHHHHHHHHHHhCCCC-CChhhHHHHHHHH
Q 043758 151 VLEVVNIMRKKKGLVPALHP----------------YKSLFYALCKNIRTVEAESFAREMESQGFY-VDKLMYTSLINGY 213 (918)
Q Consensus 151 A~~~~~~~~~~~~~~~~~~~----------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 213 (918)
|.+.++.+.. ..|+... ....+..+...+.+.+|...|.+..+..+. ++...+..+...+
T Consensus 106 A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 106 ACEILRDWLR---YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHH---TSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred cccchhhHHH---hccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 9999999886 2232111 111122334456677888888887765332 3566788888888
Q ss_pred hcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHH
Q 043758 214 CSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAAL 293 (918)
Q Consensus 214 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 293 (918)
...|++++|+..|++..... +-+...|..+..++...|++++|.+.+++.++.. +.+..++..+..+|.+.|++++|.
T Consensus 183 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHH
Confidence 89999999999999987763 2345678888888999999999999999988764 445778888899999999999999
Q ss_pred HHHHHHhh
Q 043758 294 MLLNSKVS 301 (918)
Q Consensus 294 ~~~~~~~~ 301 (918)
..|++.++
T Consensus 261 ~~~~~al~ 268 (323)
T d1fcha_ 261 EHFLEALN 268 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.9e-12 Score=131.33 Aligned_cols=226 Identities=10% Similarity=-0.010 Sum_probs=173.7
Q ss_pred hhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHHHH
Q 043758 3 LINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIEDAL 82 (918)
Q Consensus 3 ~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~A~ 82 (918)
++++|++++|...|+++++..|. ++.+|..+..++ ...|++++|.
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~P~------------------~~~a~~~lg~~~-----------------~~~~~~~~A~ 73 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQDPK------------------HMEAWQYLGTTQ-----------------AENEQELLAI 73 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTT------------------CHHHHHHHHHHH-----------------HHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHH-----------------HHcCChHHHH
Confidence 56778888888888888877776 334455555555 5666777777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcch---------------hHHHHHHHHHcCCC
Q 043758 83 RHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCW---------------SYNVLIDGLCYKGF 147 (918)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~g~ 147 (918)
..|+++++.++. +...|..++..|...|++++|++.++++...... +.. .....+..+...+.
T Consensus 74 ~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (323)
T d1fcha_ 74 SALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 151 (323)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHH
T ss_pred HHHHhhhccccc-cccccccccccccccccccccccchhhHHHhccc-hHHHHHhhhhhhhhcccccchhhHHHHHHhhH
Confidence 778888777654 6778889999999999999999999998765421 111 11112233345567
Q ss_pred hhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 043758 148 LDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFF 227 (918)
Q Consensus 148 ~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 227 (918)
..+|.+.|+...+..+...+...+..+...+...|++++|...|++.....+. +...|..+...|...|++++|++.|+
T Consensus 152 ~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~ 230 (323)
T d1fcha_ 152 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYR 230 (323)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHH
Confidence 88899999888773444445667788888899999999999999999887544 78889999999999999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043758 228 RMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDW 267 (918)
Q Consensus 228 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 267 (918)
+..+.. +-+..+|..+..++...|++++|...|++.++.
T Consensus 231 ~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 231 RALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 998863 234567889999999999999999999998764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=7e-10 Score=110.24 Aligned_cols=221 Identities=10% Similarity=-0.016 Sum_probs=174.7
Q ss_pred cCCchhHHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh-cHHHHHHHHHHHhhcCCCCcchhHH
Q 043758 58 FGQSQSALLLYQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEE-KFLEAFDYFIKICNAGVDLNCWSYN 136 (918)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~ 136 (918)
.+++.+|...++.++.+.+++++|+.+++.+++.+|. +..+|+....++...| ++++|+..++.+.+.. +-+..+|+
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~ 116 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWH 116 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHH
Confidence 3456777788888889999999999999999999866 7779999999988876 5999999999999886 56788999
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 043758 137 VLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSN 216 (918)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 216 (918)
.+...+.+.|++++|++.++.+.+. .+.+...|..+..++.+.|++++|...++.+.+..+. +...|+.+...+...
T Consensus 117 ~~~~~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~ 193 (315)
T d2h6fa1 117 HRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNT 193 (315)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHhHHHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHc
Confidence 9999999999999999999999972 3455788899999999999999999999999998665 778888877776655
Q ss_pred CC------hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-ccHhhHHHHHHHHHh
Q 043758 217 RN------MKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQ-PNMVTDLIMISNYCR 285 (918)
Q Consensus 217 g~------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 285 (918)
+. +++|+..+.+..+.. +.+...|+.+...+. ....+++.+.++...+.... .+...+..+...|..
T Consensus 194 ~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 194 TGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred cccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 54 578999998888763 335566776665554 44467788888877665322 234555566666543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=4.3e-08 Score=100.30 Aligned_cols=92 Identities=12% Similarity=-0.043 Sum_probs=55.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCC----chhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHHHH
Q 043758 546 MINGYLQNRKPIEACQLFEKMKENSVQPG----SYPYTALISGLVKKGMVDLGCMYLDRMLAD----GFV-PNVVLYTAL 616 (918)
Q Consensus 546 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 616 (918)
....+...|++++|++++++..+.....+ ...+..+..++...|++++|...++...+. +.. .....+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34455667777777777777665421111 123455566677777777777777766543 111 112345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 043758 617 INHFLRAGEFEFASRLENLMV 637 (918)
Q Consensus 617 ~~~~~~~g~~~~a~~~~~~~~ 637 (918)
...+...|++..+...+....
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al 118 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAF 118 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888777764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=6e-10 Score=112.76 Aligned_cols=235 Identities=7% Similarity=-0.041 Sum_probs=143.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh--cHHHHHHHHHHHhhcCCCCcchhHH-HHHHHHHcCCChh
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEE--KFLEAFDYFIKICNAGVDLNCWSYN-VLIDGLCYKGFLD 149 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~ 149 (918)
...|.+++|+..|+.+++.++. +..+|..+..++...+ ++++|+..+.++.+.. +.+...+. .....+...+..+
T Consensus 84 ~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccH
Confidence 4445567777888887776654 5666666665555544 4778888888877765 34444443 3445666677888
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 043758 150 EVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRM 229 (918)
Q Consensus 150 ~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 229 (918)
.|++.++.+.+ -.+-+...|+.+..++.+.|++++|...+....+. .+.. ......+...+..+.+...+.+.
T Consensus 162 ~Al~~~~~~i~--~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~~~l~~~~~a~~~~~~~ 234 (334)
T d1dcea1 162 EELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV----LLKE-LELVQNAFFTDPNDQSAWFYHRW 234 (334)
T ss_dssp HHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH----HHHH-HHHHHHHHHHCSSCSHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh----HHHH-HHHHHHHHHhcchhHHHHHHHHH
Confidence 88888887765 12344566677777777777777665544433332 1111 12223344455566677777766
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcc
Q 043758 230 LKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVH 309 (918)
Q Consensus 230 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 309 (918)
.... +++...+..+...+...++.++|...+.+..+.. +.+..++..+...|...|+.++|.+.|+...+.+ |.+..
T Consensus 235 l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~ 311 (334)
T d1dcea1 235 LLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAA 311 (334)
T ss_dssp HHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHH
T ss_pred HHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHH
Confidence 6543 2334455555666666777777777777776654 3345666777777777788888888888777654 22334
Q ss_pred hHHHHHHHHH
Q 043758 310 CYTVLIDALY 319 (918)
Q Consensus 310 ~~~~ll~~~~ 319 (918)
.|+.|...+.
T Consensus 312 y~~~L~~~~~ 321 (334)
T d1dcea1 312 YLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4555544443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=2e-08 Score=99.44 Aligned_cols=216 Identities=10% Similarity=-0.069 Sum_probs=165.5
Q ss_pred hhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCC-ChhHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 043758 98 LACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKG-FLDEVLEVVNIMRKKKGLVPALHPYKSLFY 176 (918)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~ 176 (918)
.+++.+...+.+.+++++|+.+++++++.. |-+..+|+....++...| ++++|++.++...+. -+-+..+|+.+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhH
Confidence 356667777888899999999999999987 667778899998888876 589999999999872 2445778888888
Q ss_pred HHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC---
Q 043758 177 ALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGL--- 253 (918)
Q Consensus 177 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--- 253 (918)
++.+.|++++|...++.+.+..+. +...|..+...+...|++++|+..|+++.+.+ +-+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence 999999999999999999997655 78899999999999999999999999999874 2356678777666666555
Q ss_pred ---hhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCcchHHHHHHHHHh
Q 043758 254 ---FDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLA-PSVHCYTVLIDALYK 320 (918)
Q Consensus 254 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~ 320 (918)
+++|.+.+...++.. +.+...|+.+...+.. ...+++.+.++........ .+...+..+...|..
T Consensus 199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 567888888888765 5567777777666544 4467777777776654311 223344555555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.98 E-value=6.2e-08 Score=95.94 Aligned_cols=161 Identities=9% Similarity=0.001 Sum_probs=66.5
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcC
Q 043758 174 LFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHG-FFKMG 252 (918)
Q Consensus 174 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g 252 (918)
.+..+...|++++|..+|+.+.+..+......|...+....+.|+.+.|.++|+++.+.+. .+...|...... +...|
T Consensus 105 ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~ 183 (308)
T d2onda1 105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSC
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcc
Confidence 3333334444444444444444332221122344444444444444444444444443321 111222221111 12234
Q ss_pred ChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCC--cchHHHHHHHHHhcCChhHHHH
Q 043758 253 LFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN-LAPS--VHCYTVLIDALYKHNRLMEVDE 329 (918)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~g~~~~a~~ 329 (918)
+.+.|..+|+.+.+.. +.+...+...+....+.|+++.|+.+|++..... ..|+ ...|...+.--...|+.+.+..
T Consensus 184 ~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~ 262 (308)
T d2onda1 184 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555555544432 3334444445555555555555555555544432 1111 1234444444444555555555
Q ss_pred HHHHHHh
Q 043758 330 LYKKMLA 336 (918)
Q Consensus 330 ~~~~~~~ 336 (918)
+++++.+
T Consensus 263 ~~~r~~~ 269 (308)
T d2onda1 263 VEKRRFT 269 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=3.3e-08 Score=101.22 Aligned_cols=273 Identities=14% Similarity=0.007 Sum_probs=194.4
Q ss_pred HHhhhhhhhHhcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCC-----Ccchh
Q 043758 64 ALLLYQNDFVALGNIEDALRHFDRLISKNIVPI----KLACVSILRGLFAEEKFLEAFDYFIKICNAGVD-----LNCWS 134 (918)
Q Consensus 64 a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~ 134 (918)
+..+...+....|++++|+++|+.+++..+..+ ..++..+..+|...|++++|+..|+++.+.... .....
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 333445566889999999999999988764322 246778888999999999999999988753211 11235
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhc---CCCCCC---cccHHHHHHHHhccCchHHHHHHHHHHHhCCCC----CChh
Q 043758 135 YNVLIDGLCYKGFLDEVLEVVNIMRKK---KGLVPA---LHPYKSLFYALCKNIRTVEAESFAREMESQGFY----VDKL 204 (918)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~ 204 (918)
+..+...+...|++..+...+...... ...... ...+..+...+...|+++.+...+......... ....
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 666777888999999999988876541 111111 124455667788899999999999888764322 1234
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHhc----CCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---ccHhh
Q 043758 205 MYTSLINGYCSNRNMKMAMRLFFRMLKT----GCEPD--SYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQ---PNMVT 275 (918)
Q Consensus 205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~ 275 (918)
.+..+...+...+++..+...+.+.... +..+. ...+..+...+...|+++.|...++........ .....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 5566677788899999999988876542 11111 124555666778899999999999988765322 22345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043758 276 DLIMISNYCREGEVDAALMLLNSKVSS----NLAP-SVHCYTVLIDALYKHNRLMEVDELYKKMLA 336 (918)
Q Consensus 276 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (918)
+..+...|...|++++|...++..... +..| ...++..+...|...|++++|.+.|++..+
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666788899999999999999887632 2223 345677888999999999999999988764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=3.9e-08 Score=97.43 Aligned_cols=221 Identities=10% Similarity=0.008 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchh--------------cHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 043758 78 IEDALRHFDRLISKNIVPIKLACVSILRGLFAEE--------------KFLEAFDYFIKICNAGVDLNCWSYNVLIDGLC 143 (918)
Q Consensus 78 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (918)
.+.+..+|++++...+. ++..|...+.-+...+ ..++|..+|++.+....+.+...|...+..+.
T Consensus 32 ~~Rv~~vyerAl~~~~~-~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45577788888876543 5667777666655443 34788889998887654556667778888888
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHH-HhcCCChHHH
Q 043758 144 YKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLING-YCSNRNMKMA 222 (918)
Q Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A 222 (918)
+.|+.+.|..+|+.+.+ .........|...+..+.+.|++++|.++|+.+.+..+. +...|...... +...|+.+.|
T Consensus 111 ~~~~~~~a~~i~~~~l~-~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLA-IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHT-SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcccHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHH
Confidence 89999999999999876 221122346788888888889999999999998887544 44455444433 3446888999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCcc--HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043758 223 MRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWG-FQPN--MVTDLIMISNYCREGEVDAALMLLNSK 299 (918)
Q Consensus 223 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 299 (918)
..+|+.+.+.. +.+...|...+..+...|+.+.|..+|++..... ..|+ ...|...+..-...|+.+.+..+++++
T Consensus 189 ~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988762 3455678888888889999999999999987753 3333 346777777777889999999998888
Q ss_pred hhC
Q 043758 300 VSS 302 (918)
Q Consensus 300 ~~~ 302 (918)
.+.
T Consensus 268 ~~~ 270 (308)
T d2onda1 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=2e-09 Score=108.77 Aligned_cols=255 Identities=10% Similarity=-0.067 Sum_probs=188.2
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHH----------hhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCC-
Q 043758 78 IEDALRHFDRLISKNIVPIKLACVSILRG----------LFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKG- 146 (918)
Q Consensus 78 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 146 (918)
.++|+++++.+++.+|. +..+|+..-.. +...|++++|+.+++.+.+.. +-+...|..+..++...+
T Consensus 45 ~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhcc
Confidence 46777778887776644 44455433222 344567899999999999876 556677777777777665
Q ss_pred -ChhHHHHHHHHHHhcCCCCCCcccHH-HHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 043758 147 -FLDEVLEVVNIMRKKKGLVPALHPYK-SLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMR 224 (918)
Q Consensus 147 -~~~~A~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 224 (918)
++++|+..++.+.+ . .+++...+. .....+...+.+++|...++...+..+. +...|+.+..++...|++++|..
T Consensus 123 ~~~~~a~~~~~~al~-~-~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 123 PNWARELELCARFLE-A-DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp CCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHh-h-CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHH
Confidence 58899999999987 2 233444443 3446677789999999999999988665 88899999999999999988877
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 043758 225 LFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNL 304 (918)
Q Consensus 225 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 304 (918)
.+.+..+. .|+. ......+...+..+++...+....... +++...+..+...+...|+.++|...+......+
T Consensus 200 ~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 272 (334)
T d1dcea1 200 QGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN- 272 (334)
T ss_dssp CCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-
Confidence 66554433 1221 223334566677888888888887765 4556667777788888899999999999988765
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 043758 305 APSVHCYTVLIDALYKHNRLMEVDELYKKMLANRVAPDHLLS 346 (918)
Q Consensus 305 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 346 (918)
+.+..+|..+..++...|++++|.+.|++..+ +.|+...|
T Consensus 273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y 312 (334)
T d1dcea1 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAY 312 (334)
T ss_dssp HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHH
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHH
Confidence 34667788899999999999999999999987 46665444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=3e-08 Score=95.80 Aligned_cols=218 Identities=12% Similarity=-0.050 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHhCCCCC---ChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHH
Q 043758 78 IEDALRHFDRLISKNIVP---IKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEV 154 (918)
Q Consensus 78 ~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 154 (918)
.+.|+.-+++++...... ...+|..++.+|.+.|++++|+..|++.++.. |-+..+|+.+..++.+.|++++|++.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 445555566665543211 23366677777888888888888888888775 55667788888888888888888888
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCC
Q 043758 155 VNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGC 234 (918)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 234 (918)
|+++.+. .+.+..++..+..++...|++++|...|+...+..+. +......+...+...+..+.+..+.......
T Consensus 94 ~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (259)
T d1xnfa_ 94 FDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-- 168 (259)
T ss_dssp HHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--
T ss_pred hhHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--
Confidence 8888762 1233556677777778888888888888887776433 4444444444444555555555555544443
Q ss_pred CCChhhHHHHHHHHHhcCC----hhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 043758 235 EPDSYTCNTLIHGFFKMGL----FDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSN 303 (918)
Q Consensus 235 ~p~~~~~~~ll~~~~~~g~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 303 (918)
.++...++. +..+..... .+.+...+....... +....++..+...|...|++++|...|+.....+
T Consensus 169 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 169 DKEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred chhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 222222222 111111111 111111111111110 1123355667777888888888888888777654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=3.2e-07 Score=88.35 Aligned_cols=29 Identities=10% Similarity=-0.167 Sum_probs=21.9
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 043758 414 VAFTIYISALCKGGKYEKAYVCLFQLVNF 442 (918)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 442 (918)
.+|..+...+...|++++|+..|+..++.
T Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 210 ETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 34566777788888888888888887764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=2.2e-06 Score=77.02 Aligned_cols=93 Identities=15% Similarity=0.035 Sum_probs=75.7
Q ss_pred hHHhhhhhh--hHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHH
Q 043758 63 SALLLYQND--FVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLID 140 (918)
Q Consensus 63 ~a~~~~~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 140 (918)
+|..+|.+. +...|+++.|++.|..+. .|++.+|..+..+|...|++++|++.|++.++.+ +.+...|..+..
T Consensus 4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~ 78 (192)
T d1hh8a_ 4 EAISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGM 78 (192)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHH
Confidence 455555443 378889999999887642 3567788889999999999999999999999887 567788899999
Q ss_pred HHHcCCChhHHHHHHHHHHh
Q 043758 141 GLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~~~ 160 (918)
++.+.|++++|++.|++...
T Consensus 79 ~~~~~g~~~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 79 LYYQTEKYDLAIKDLKEALI 98 (192)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHH
Confidence 99999999999999998875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=3e-06 Score=76.08 Aligned_cols=127 Identities=9% Similarity=-0.044 Sum_probs=87.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043758 727 LYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLC 806 (918)
Q Consensus 727 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 806 (918)
.|+. ...+...|++++|++.|.++ .+|+..+|..+..+|...|++++|++.|++.++... -....|..+..+|.
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHH
Confidence 3443 55667778888888887754 245666777788888888888888888888877532 24677778888888
Q ss_pred HcCChhHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHccCChhhHHHHHHHHHhCC
Q 043758 807 QAGRLSHVFSVFYSMHKRGFVPK----------------KATYEHLLECFCANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 807 ~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 860 (918)
+.|++++|+..|++.... .+++ ..++..+..++.+.|++++|.+.++......
T Consensus 82 ~~g~~~~A~~~~~kAl~~-~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQ-LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HTTCHHHHHHHHHHHHHT-TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhccHHHHHHHHHHHHHh-CccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 888888888888877643 1111 1234455556677777777777777766553
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=2e-06 Score=69.80 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=77.1
Q ss_pred hhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChh
Q 043758 70 NDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLD 149 (918)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 149 (918)
..+.+.|++++|+..|+.+++.++. ++.+|..+..+|...|++++|+..+..+++.+ +.+...|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 3447888999999999999888755 77789999999999999999999999998886 667888999999999999999
Q ss_pred HHHHHHHHHHh
Q 043758 150 EVLEVVNIMRK 160 (918)
Q Consensus 150 ~A~~~~~~~~~ 160 (918)
+|+..|+...+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999999886
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.36 E-value=1.8e-06 Score=84.07 Aligned_cols=160 Identities=8% Similarity=-0.136 Sum_probs=88.3
Q ss_pred HhcCChHHHHHHHHHHHhC----C-CCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCC-----cchhHHHHHHHH
Q 043758 73 VALGNIEDALRHFDRLISK----N-IVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDL-----NCWSYNVLIDGL 142 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~ 142 (918)
...|++++|.+.|.++.+. + ......+|..++.+|.+.|++++|+..|++..+..... ...++..++..|
T Consensus 48 ~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 127 (290)
T d1qqea_ 48 RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEIL 127 (290)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhH
Confidence 5666666666666666542 1 11123477888888889999999999988766432111 123455555555
Q ss_pred H-cCCChhHHHHHHHHHHhc---CCCCCC-cccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCh------hhHHHHHH
Q 043758 143 C-YKGFLDEVLEVVNIMRKK---KGLVPA-LHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDK------LMYTSLIN 211 (918)
Q Consensus 143 ~-~~g~~~~A~~~~~~~~~~---~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~ 211 (918)
. ..|++++|++.+++..+. .+.++. ..++..+...+...|++++|...|++.......... ..+...+.
T Consensus 128 ~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (290)
T d1qqea_ 128 ENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGL 207 (290)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHH
Confidence 3 357777777777776531 111110 223455555666666666666666665554222111 11223333
Q ss_pred HHhcCCChHHHHHHHHHHHhc
Q 043758 212 GYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 212 ~~~~~g~~~~A~~~~~~m~~~ 232 (918)
.+...|+++.|...|++..+.
T Consensus 208 ~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 208 CQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHhccHHHHHHHHHHHHHh
Confidence 444556666666666655543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=7.4e-06 Score=66.32 Aligned_cols=88 Identities=11% Similarity=0.089 Sum_probs=34.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhH
Q 043758 770 HIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPA 849 (918)
Q Consensus 770 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 849 (918)
+...|++++|+..|+++++.. +-+...|..+..+|...|++++|+..+++..+.. +.+...|..+..++...|++++|
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHHH
Confidence 334444444444444443321 1123334444444444444444444444443321 12333333333444444444444
Q ss_pred HHHHHHHHhC
Q 043758 850 FNMFKEMIVH 859 (918)
Q Consensus 850 ~~~~~~~~~~ 859 (918)
+..+++.+..
T Consensus 91 ~~~~~~a~~~ 100 (117)
T d1elwa_ 91 KRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 4444444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.25 E-value=3.4e-06 Score=77.07 Aligned_cols=123 Identities=7% Similarity=-0.122 Sum_probs=93.6
Q ss_pred CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHH
Q 043758 758 PNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHL 836 (918)
Q Consensus 758 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 836 (918)
|+...+......+.+.|++++|+..|+++++.. +-++..|..+..+|.+.|++++|+..+++..+ +.| +...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 666677778888999999999999999888753 23678888889999999999999999999885 556 45678888
Q ss_pred HHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 043758 837 LECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEA 884 (918)
Q Consensus 837 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 884 (918)
..+|.+.|++++|+..+++++... |.+...+...+..+...++...+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~l~~~~~~~~ 125 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIAKKKRW 125 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHHHhHH
Confidence 889999999999999999887654 44444454455555554444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=4.5e-06 Score=72.45 Aligned_cols=89 Identities=13% Similarity=0.065 Sum_probs=70.6
Q ss_pred hhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChh
Q 043758 70 NDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLD 149 (918)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 149 (918)
..+.+.|++++|...|..+++.++. +...|..+..+|...|++++|+..|+++++.. +.+..+|..++.++...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence 3447778888888888888887754 67788888888888888888888888888775 556678888888888888888
Q ss_pred HHHHHHHHHHh
Q 043758 150 EVLEVVNIMRK 160 (918)
Q Consensus 150 ~A~~~~~~~~~ 160 (918)
+|+..+++..+
T Consensus 96 eA~~~~~~a~~ 106 (159)
T d1a17a_ 96 AALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888876
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.24 E-value=0.00046 Score=65.49 Aligned_cols=224 Identities=15% Similarity=0.037 Sum_probs=135.5
Q ss_pred hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHc----CCChhHHHHHHHHHHhcCCCCCCcccHH
Q 043758 97 KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCY----KGFLDEVLEVVNIMRKKKGLVPALHPYK 172 (918)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 172 (918)
|.++..+...+...+++++|+++|++..+.| +...+..|...|.. ..+...|...++...+ .+ +.....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~-~~---~~~a~~ 74 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN---YSNGCH 74 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc-cc---ccchhh
Confidence 4456666666677777777777777776665 44455556655554 4566777777777665 22 222233
Q ss_pred HHHHHHh----ccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHh----cCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 043758 173 SLFYALC----KNIRTVEAESFAREMESQGFYVDKLMYTSLINGYC----SNRNMKMAMRLFFRMLKTGCEPDSYTCNTL 244 (918)
Q Consensus 173 ~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 244 (918)
.+...+. ...+.+.|...++...+.|. ......+...+. .......+...+...... .+...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 3333332 23566777777777766543 222223322222 244566666666665543 355566666
Q ss_pred HHHHHh----cCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCcchHHHHHH
Q 043758 245 IHGFFK----MGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCR----EGEVDAALMLLNSKVSSNLAPSVHCYTVLID 316 (918)
Q Consensus 245 l~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 316 (918)
...+.. ..+...+..+++...+.| +......+...|.. ..+++.|...|+...+.| ++..+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 666654 345566777777777654 44555555555554 467888999998888765 4556666777
Q ss_pred HHHh----cCChhHHHHHHHHHHhCCC
Q 043758 317 ALYK----HNRLMEVDELYKKMLANRV 339 (918)
Q Consensus 317 ~~~~----~g~~~~a~~~~~~~~~~~~ 339 (918)
.|.. ..+.++|.+.|++....|.
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 7764 3478888888888877664
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=1.1e-05 Score=69.90 Aligned_cols=117 Identities=10% Similarity=-0.040 Sum_probs=75.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccC
Q 043758 766 LINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANC 844 (918)
Q Consensus 766 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~ 844 (918)
....|.+.|++++|+..|+++++.. +-+...|..+..+|...|++++|+..+++..+. .| +...|..+..++...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHHHcC
Confidence 3445667777777777777777642 124566777777777777777777777777653 34 4456777777777777
Q ss_pred ChhhHHHHHHHHHhCCCCCCcccHHHHHHHH--HhcCCHHHHHH
Q 043758 845 LSIPAFNMFKEMIVHDHVPCLSNCNWLLNIL--CQEKHFHEAQI 886 (918)
Q Consensus 845 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~ 886 (918)
++++|...+++..... |.++.++..+..+. ...+.+++|..
T Consensus 93 ~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777665 55566555555443 33344555544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.19 E-value=1.4e-05 Score=77.64 Aligned_cols=203 Identities=11% Similarity=-0.022 Sum_probs=138.8
Q ss_pred hhhhHHHHHhCCChhHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC---CCCc--HHh
Q 043758 693 KSTAFSAVFSNGKKGTVQKIVLKVKDI----EFMP-NLYLYNDIFLLLCGVGRMDDAYDHFQMMKREG---LRPN--QVT 762 (918)
Q Consensus 693 ~~~~~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p~--~~~ 762 (918)
+..+...+...|++++|.+.+.+..+. +.++ -..+|..+..+|.+.|++++|+..+++..+.- -.+. ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 445567788899999999999988653 2122 24689999999999999999999999875521 1111 234
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-----CH-
Q 043758 763 FCILINGHIA-AGEIDQAIGLFNQMNAD----GCVP-DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-----KK- 830 (918)
Q Consensus 763 ~~~li~~~~~-~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~- 830 (918)
+..+...|.. .|++++|++.+++..+. +..+ -..++..+...+...|++++|+..+++........ ..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 5566666654 69999999999988653 2222 13567888999999999999999999987642111 11
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHhCCC-CCCcc---cHHHHHHHHHh--cCCHHHHHHHHHHHHhCC
Q 043758 831 ATYEHLLECFCANCLSIPAFNMFKEMIVHDH-VPCLS---NCNWLLNILCQ--EKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 831 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~---~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~ 895 (918)
..+...+.++...|++..|...+++...... .+++. ....++.++.. .+++++|...++.+.+.+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 1233444567788999999999999887641 12222 33455566555 356889988887655543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.16 E-value=3.2e-06 Score=67.83 Aligned_cols=84 Identities=14% Similarity=-0.045 Sum_probs=59.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.+.|++++|...|+++++.++. ++.+|..+..++.+.|++++|+..|+++++.. |.+..++..+...|...|++++|+
T Consensus 27 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~A~ 104 (112)
T d1hxia_ 27 LKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAAL 104 (112)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHHHH
Confidence 6667777777777777766644 56677777777777777777777777777665 445667777777777777777777
Q ss_pred HHHHHH
Q 043758 153 EVVNIM 158 (918)
Q Consensus 153 ~~~~~~ 158 (918)
+.+++.
T Consensus 105 ~~l~~~ 110 (112)
T d1hxia_ 105 ASLRAW 110 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.14 E-value=6.3e-06 Score=75.18 Aligned_cols=98 Identities=7% Similarity=-0.127 Sum_probs=86.0
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 043758 723 PNLYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVP-DKTVYNTL 801 (918)
Q Consensus 723 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 801 (918)
|+...+......|.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|+++++. .| +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence 677778888999999999999999999998853 335667888999999999999999999999874 45 56889999
Q ss_pred HHHHHHcCChhHHHHHHHHHHh
Q 043758 802 LKGLCQAGRLSHVFSVFYSMHK 823 (918)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~ 823 (918)
..+|...|++++|+..+++..+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998875
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.12 E-value=5.8e-06 Score=66.30 Aligned_cols=90 Identities=12% Similarity=0.011 Sum_probs=69.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 043758 800 TLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQE 878 (918)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 878 (918)
.+...+.+.|++++|+..+++..+. .| +...|..+..++.+.|++++|+..++++++.. |.+..++..++.+|...
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 4556677788888888888887753 34 55677777778888888888888888887776 77788888888888888
Q ss_pred CCHHHHHHHHHHHH
Q 043758 879 KHFHEAQIVLDVMH 892 (918)
Q Consensus 879 g~~~~A~~~~~~~~ 892 (918)
|++++|.+.+++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 88888888887653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.05 E-value=0.0011 Score=62.66 Aligned_cols=114 Identities=10% Similarity=-0.014 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCh
Q 043758 775 EIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQ----AGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCA----NCLS 846 (918)
Q Consensus 775 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 846 (918)
....+...+...... .+...+..+...|.. ..+...+...++...+.| +......+...+.. ..++
T Consensus 125 ~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 125 DFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred hhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccch
Confidence 344444444444432 233444445555543 223444555555544332 33333333333332 3456
Q ss_pred hhHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC
Q 043758 847 IPAFNMFKEMIVHDHVPCLSNCNWLLNILCQ----EKHFHEAQIVLDVMHKRGRL 897 (918)
Q Consensus 847 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 897 (918)
++|...+++..+.| ++.++..|+.+|.. ..++++|.+.+++..+.|-.
T Consensus 199 ~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 199 KEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 66777777666655 34556666666664 33666777777776666644
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.98 E-value=3.9e-05 Score=64.65 Aligned_cols=126 Identities=13% Similarity=0.038 Sum_probs=87.9
Q ss_pred ChhhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHHhhhhhhhHhcCChHH
Q 043758 1 DQLINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSALLLYQNDFVALGNIED 80 (918)
Q Consensus 1 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~g~~~~ 80 (918)
+++-+.++|++|...++.++...|. ++.++..+..++...+++..+.+-. +.+++
T Consensus 5 ~~~~r~~~fe~A~~~~e~al~~~P~------------------~~~~~~~~g~~l~~~~~~~~~~e~~-------~~~~~ 59 (145)
T d1zu2a1 5 TEFDRILLFEQIRQDAENTYKSNPL------------------DADNLTRWGGVLLELSQFHSISDAK-------QMIQE 59 (145)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCTT------------------CHHHHHHHHHHHHHHHHHSCHHHHH-------HHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCc------------------chHHHHHHHHHHHHhhhhhhhhHHH-------HHHHH
Confidence 3577889999999999999999998 5556667777776666555554432 34688
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHhhchhc-----------HHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChh
Q 043758 81 ALRHFDRLISKNIVPIKLACVSILRGLFAEEK-----------FLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLD 149 (918)
Q Consensus 81 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 149 (918)
|+..|+.+++.+|. +..+|+.+..+|...|+ +++|...|+++.+.. |+...|...+..+ .
T Consensus 60 Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~--P~~~~~~~~L~~~------~ 130 (145)
T d1zu2a1 60 AITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLEMT------A 130 (145)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH------H
T ss_pred HHHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC--CCHHHHHHHHHHH------H
Confidence 99999999998865 77799999998877664 566777777776653 4444444333333 3
Q ss_pred HHHHHHHHHHh
Q 043758 150 EVLEVVNIMRK 160 (918)
Q Consensus 150 ~A~~~~~~~~~ 160 (918)
.|.+++.++.+
T Consensus 131 ka~~~~~e~~k 141 (145)
T d1zu2a1 131 KAPQLHAEAYK 141 (145)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=7.6e-06 Score=66.34 Aligned_cols=94 Identities=10% Similarity=0.027 Sum_probs=39.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 043758 766 LINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGR---LSHVFSVFYSMHKRGFVPKK-ATYEHLLECFC 841 (918)
Q Consensus 766 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 841 (918)
++..+...+++++|.+.|++.+..+ +.++.++..+..++.+.++ +++|+.+++++.+.+-.|+. .+|..+..+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 3444444445555555555544431 1133444444444443222 22344444444432111111 13344444445
Q ss_pred ccCChhhHHHHHHHHHhCC
Q 043758 842 ANCLSIPAFNMFKEMIVHD 860 (918)
Q Consensus 842 ~~~~~~~A~~~~~~~~~~~ 860 (918)
+.|++++|.+.++++++..
T Consensus 84 ~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHhC
Confidence 5555555555555554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=0.0088 Score=57.29 Aligned_cols=105 Identities=11% Similarity=0.073 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHh
Q 043758 508 YDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSVQPGSYPYTALISGLVK 587 (918)
Q Consensus 508 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 587 (918)
|..++..+.+.++++.|.+++.+. .+..+|..+...|.+.....-+ .+.......+......++..|-.
T Consensus 43 ~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~ 111 (336)
T d1b89a_ 43 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQD 111 (336)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHH
Confidence 344455566666666666655433 2445666666666665544332 12222223344445566666777
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 043758 588 KGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAG 624 (918)
Q Consensus 588 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 624 (918)
.|.+++...+++...... ..+...++.++.+|++.+
T Consensus 112 ~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 112 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred cCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 777777777777665432 445556666666666643
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=9.6e-05 Score=64.35 Aligned_cols=84 Identities=8% Similarity=-0.178 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 043758 797 VYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNIL 875 (918)
Q Consensus 797 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (918)
+|+.+..+|.+.|++++|+..+++..+. .| +...+..+..++...|++++|...++++++.. |.|+.+...+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4566777788888888888888887763 45 66677777788888888888888888888776 66777777777776
Q ss_pred HhcCCHHH
Q 043758 876 CQEKHFHE 883 (918)
Q Consensus 876 ~~~g~~~~ 883 (918)
.+.+...+
T Consensus 141 ~~~~~~~~ 148 (170)
T d1p5qa1 141 QRIRRQLA 148 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65554443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.86 E-value=4.1e-05 Score=66.98 Aligned_cols=132 Identities=11% Similarity=-0.024 Sum_probs=93.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 043758 764 CILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCAN 843 (918)
Q Consensus 764 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 843 (918)
..........|++++|.+.|.+.+.. .+... +........+...-..+.. -....+..+..++.+.
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~--------l~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALRE--WRGPV--------LDDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CCSST--------TGGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--Ccccc--------cccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHC
Confidence 33445678899999999999999885 11110 0000111111111111110 0123567788899999
Q ss_pred CChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCcccchhhhccc
Q 043758 844 CLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHK-----RGRLPCTSTRGFWRKHF 910 (918)
Q Consensus 844 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 910 (918)
|++++|+..+++++... |-+...|..++.+|.+.|++++|.+.|+++++ .|++|+..+..+.....
T Consensus 81 g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il 151 (179)
T d2ff4a2 81 GRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 151 (179)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 99999999999999987 88899999999999999999999999999844 69999988877766544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=7.5e-06 Score=86.37 Aligned_cols=132 Identities=11% Similarity=-0.048 Sum_probs=53.3
Q ss_pred hcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHH
Q 043758 111 EKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESF 190 (918)
Q Consensus 111 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 190 (918)
+.++.|+..+....... +++...+..+...+.+.|+.+.|...+..... . .+ ...+..+...+...|++++|...
T Consensus 100 ~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~--~~-~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS-Y--IC-QHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHTC--------------------------------CCHHHH-H--HH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC-C--CH-HHHHHHHHHHHHHcccHHHHHHH
Confidence 44444544444433332 23444555555556666666666655555443 0 01 12344455555566666666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 043758 191 AREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFF 249 (918)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 249 (918)
|++..+..+. +...|+.|...|...|+..+|+..|.+..... +|...++..|...+.
T Consensus 175 y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 175 YRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 6666655333 45566666666666666666666666665542 344445555555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=3.4e-05 Score=62.34 Aligned_cols=39 Identities=21% Similarity=0.059 Sum_probs=16.7
Q ss_pred HHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 043758 104 LRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLC 143 (918)
Q Consensus 104 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 143 (918)
+..+...+++++|.+.|++.+..+ +.+..++..+..++.
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~ 44 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLV 44 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 333444444444444444444443 333344444444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=1.6e-05 Score=83.78 Aligned_cols=227 Identities=7% Similarity=-0.095 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcc-hhHHHHHHHHHcCCChhHHHHHHHHH
Q 043758 80 DALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNC-WSYNVLIDGLCYKGFLDEVLEVVNIM 158 (918)
Q Consensus 80 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (918)
+|.+.|+++.+..+. ...++..+..++..+|++++| |++++..+ |+. ..++.. ..+.+ ..+..+++.++..
T Consensus 4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e-~~Lw~-~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVE-QDLWN-HAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHH-HHHHH-HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHH-HHHHH-HHHHHHHHHHHHh
Confidence 466677777664422 233666677777778888776 66665443 211 111111 11111 1234566666666
Q ss_pred HhcCCCCCCcccHHHHHHH--HhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCC
Q 043758 159 RKKKGLVPALHPYKSLFYA--LCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEP 236 (918)
Q Consensus 159 ~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 236 (918)
.+ ....++.......+.. ....+.++.+...+....+..+ ++...+..+...+.+.|+.+.|...+....+.. |
T Consensus 76 ~k-~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~ 151 (497)
T d1ya0a1 76 AK-NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C 151 (497)
T ss_dssp HS-CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--H
T ss_pred cc-cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H
Confidence 55 3323333222222111 1223445555554444433322 255667777788888888888888777665431 1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHH
Q 043758 237 DSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTVLID 316 (918)
Q Consensus 237 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 316 (918)
..++..+...+...|++++|...|++..+.. +.+...|+.|...|...|+..+|...|.+..... +|-..++..|..
T Consensus 152 -~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~ 228 (497)
T d1ya0a1 152 -QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK 228 (497)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 2466777788888888899998888888775 5567788888888888899888888888888765 566677777776
Q ss_pred HHHhc
Q 043758 317 ALYKH 321 (918)
Q Consensus 317 ~~~~~ 321 (918)
.+.+.
T Consensus 229 ~~~~~ 233 (497)
T d1ya0a1 229 ALSKA 233 (497)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=5.9e-05 Score=61.97 Aligned_cols=91 Identities=13% Similarity=0.112 Sum_probs=69.3
Q ss_pred hhhhhHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcc-------hhHHHHHH
Q 043758 68 YQNDFVALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNC-------WSYNVLID 140 (918)
Q Consensus 68 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~ 140 (918)
.+..+.+.|++++|+..|..+++.++. ++.++..+..+|.+.|++++|+..++++++.. +.+. .+|..+..
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHH
Confidence 345567888888888888888887754 67788888999999999999999998887643 2122 25556666
Q ss_pred HHHcCCChhHHHHHHHHHHh
Q 043758 141 GLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~~~ 160 (918)
.+...+++++|++.|+....
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 77778888888888887765
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.75 E-value=0.00027 Score=61.28 Aligned_cols=93 Identities=6% Similarity=-0.116 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 043758 797 VYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILC 876 (918)
Q Consensus 797 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (918)
+|..+..+|.+.|++++|+..+++..+. -+.+...|..+..++...|++++|...+++++... |.++.+...+..+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l-~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGL-DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhc-ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4555677788888888888888888763 23466677778888888888888888888888876 777777777777766
Q ss_pred hcCCHH-HHHHHHHHH
Q 043758 877 QEKHFH-EAQIVLDVM 891 (918)
Q Consensus 877 ~~g~~~-~A~~~~~~~ 891 (918)
..+.+. ...+++..|
T Consensus 144 ~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 144 KAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 665443 344444444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=8.4e-05 Score=64.74 Aligned_cols=111 Identities=9% Similarity=-0.085 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNAD-GCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECF 840 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 840 (918)
.+......+.+.|++++|+..|++.+.. ...+.. ...-......+. ..+|..+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~---------------~~~~~~~~~~~~-------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF---------------SNEEAQKAQALR-------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC---------------CSHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcccc---------------chHHHhhhchhH-------HHHHHHHHHHH
Confidence 3444556677788888888888777664 111110 000001111111 13566778899
Q ss_pred HccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 841 CANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 841 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.+.|++++|+..+++.+..+ |.++.++..++.+|...|++++|...++...+..
T Consensus 73 ~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred Hhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 99999999999999999987 8899999999999999999999999999998876
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.63 E-value=0.00027 Score=60.09 Aligned_cols=109 Identities=14% Similarity=-0.012 Sum_probs=71.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043758 762 TFCILINGHIAAGEIDQAIGLFNQMNAD-GCVP---DKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLL 837 (918)
Q Consensus 762 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 837 (918)
.+..-...+.+.|++.+|+..|.+++.. ...+ +..... ....+ ...++..+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~-----------------~~~~~-------~~~~~~Nla 74 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-----------------KKKNI-------EISCNLNLA 74 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH-----------------HHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH-----------------hhhhH-------HHHHHhhHH
Confidence 4555667788888888888888888764 1111 111000 00000 113455666
Q ss_pred HHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 838 ECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 838 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
.+|.+.|++++|+..++++++.+ |.+..+|..++.+|...|++++|...+++..+..
T Consensus 75 ~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 75 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77777788888888888777776 6777778888888888888888888887777765
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.62 E-value=0.032 Score=53.29 Aligned_cols=135 Identities=13% Similarity=0.057 Sum_probs=62.2
Q ss_pred cchhHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 043758 131 NCWSYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLI 210 (918)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 210 (918)
|..--..++..|.+.|.++.|..+|..+.. |..++..+.+.+++..|..++... . +..+|..+.
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~--~----~~~~~k~~~ 76 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKA--N----STRTWKEVC 76 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHH--T----CHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHc--C----CHHHHHHHH
Confidence 333334455556666666666666665432 444555556666666665554322 1 455666666
Q ss_pred HHHhcCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC
Q 043758 211 NGYCSNRNMKMAMRLFFRMLKTGCEPDSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNMVTDLIMISNYCREG 287 (918)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 287 (918)
.++........+ .+.......+......++..|-..|.+++...+++...... ..+...++.++..|++.+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 666555444332 11112222333444555666666666666666666554332 344555566666666543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=9.6e-05 Score=60.65 Aligned_cols=95 Identities=9% Similarity=0.066 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCC----HHHHHHH
Q 043758 763 FCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRG--FVPK----KATYEHL 836 (918)
Q Consensus 763 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~~l 836 (918)
+..+...+...|++++|+..|++.++.+. .+...|..+..+|.+.|++++|+..++++++.. .... ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 44566667777777777777777776422 245666677777777777777777777765311 0000 1134444
Q ss_pred HHHHHccCChhhHHHHHHHHHh
Q 043758 837 LECFCANCLSIPAFNMFKEMIV 858 (918)
Q Consensus 837 ~~~~~~~~~~~~A~~~~~~~~~ 858 (918)
...+...+++++|...+++.+.
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 4555555666666666655543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.59 E-value=0.00025 Score=61.72 Aligned_cols=86 Identities=7% Similarity=-0.140 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHH
Q 043758 795 KTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVP-KKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLN 873 (918)
Q Consensus 795 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 873 (918)
...|..+..++.+.|++++|+..+++..+. .| +...|..+..++.+.|++++|+..++++++.. |.+..+...+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~ 153 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhh--hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 345566677777778888888888777753 34 55567777777788888888888888877776 666666666666
Q ss_pred HHHhcCCHHH
Q 043758 874 ILCQEKHFHE 883 (918)
Q Consensus 874 ~~~~~g~~~~ 883 (918)
+..+.....+
T Consensus 154 ~~~~l~~~~~ 163 (169)
T d1ihga1 154 VKQKIKAQKD 163 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6554444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.57 E-value=0.00013 Score=61.21 Aligned_cols=86 Identities=9% Similarity=-0.091 Sum_probs=61.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhch----------hcHHHHHHHHHHHhhcCCCCcchhHHHHHHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAE----------EKFLEAFDYFIKICNAGVDLNCWSYNVLIDGL 142 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 142 (918)
.+.+.+++|...|+.+++.+|. ++.++..+..+|... +.+++|+..|+++++.. |.+..+|+.+..+|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence 4556678999999999988865 777888888887644 45678888888888776 55677888888777
Q ss_pred HcCCC-----------hhHHHHHHHHHHh
Q 043758 143 CYKGF-----------LDEVLEVVNIMRK 160 (918)
Q Consensus 143 ~~~g~-----------~~~A~~~~~~~~~ 160 (918)
...|+ ++.|.+.|+...+
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 65543 3445555555544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.54 E-value=0.00044 Score=58.66 Aligned_cols=128 Identities=7% Similarity=-0.133 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043758 725 LYLYNDIFLLLCGVGRMDDAYDHFQMMKREGLRPNQVTFCILINGHIAAGEIDQAIGLFNQMNADGCVPDKTVYNTLLKG 804 (918)
Q Consensus 725 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 804 (918)
...+......+.+.|++.+|+..|++.+.. -|.... .. +.... ..... ....+|..+..+
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~-----------~~-~~~~~--~~~~~----~~~~~~~Nla~~ 76 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEE-----------WD-DQILL--DKKKN----IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTT-----------CC-CHHHH--HHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhh-----------hh-hHHHH--Hhhhh----HHHHHHhhHHHH
Confidence 456777888999999999999999998863 111100 00 00000 00000 012355566667
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHHHH
Q 043758 805 LCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLLNI 874 (918)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 874 (918)
|.+.|++++|++.+++..+.. +.+...|..+..++...|++++|...+++.+..+ |.|..+...+..+
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 144 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELC 144 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 777777777777777766531 2355667777777777777777777777777665 5555555544443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.47 E-value=8.2e-05 Score=69.67 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=14.3
Q ss_pred hhhhhhhhhHHHHHHHHHhccCC
Q 043758 3 LINRGLIASAQQVIQRLIANSAS 25 (918)
Q Consensus 3 ~~~~~~~~~A~~~~~~~~~~~~~ 25 (918)
.+++|++++|...+++.++.+|+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~ 28 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK 28 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC
Confidence 45566666666666666666665
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.34 E-value=0.0021 Score=55.33 Aligned_cols=60 Identities=10% Similarity=-0.094 Sum_probs=29.7
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 043758 172 KSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKT 232 (918)
Q Consensus 172 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 232 (918)
+.+..+|.+.|++++|...++...+..+. +..+|..+..+|...|++++|+..|+++.+.
T Consensus 68 ~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 68 LNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33444444555555555555555544332 4445555555555555555555555555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.29 E-value=0.00094 Score=57.84 Aligned_cols=93 Identities=15% Similarity=0.086 Sum_probs=43.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcC--------------CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH
Q 043758 209 LINGYCSNRNMKMAMRLFFRMLKTG--------------CEP-DSYTCNTLIHGFFKMGLFDKGWVLYSQMSDWGFQPNM 273 (918)
Q Consensus 209 li~~~~~~g~~~~A~~~~~~m~~~~--------------~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 273 (918)
....+...|++++|+..|.++.+.. +.| ....|..+..++.+.|++++|+..+.++++.. +.+.
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~ 111 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNT 111 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhh
Confidence 3445566677777777776654310 001 11223333444444455555555555544443 2334
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043758 274 VTDLIMISNYCREGEVDAALMLLNSKVSS 302 (918)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 302 (918)
..|..+..+|.+.|+++.|.+.|+...+.
T Consensus 112 ~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 112 KALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44444444455555555555555444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.24 E-value=0.00075 Score=58.68 Aligned_cols=69 Identities=12% Similarity=0.012 Sum_probs=38.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHh-----CCCCCChh
Q 043758 134 SYNVLIDGLCYKGFLDEVLEVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMES-----QGFYVDKL 204 (918)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 204 (918)
.+..++..+.+.|++++|+..++.+.+. .+-+...|..++.+|.+.|+.++|.+.|+++.+ .|+.|...
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 4455555566666666666666666541 233445556666666666666666666665533 35555443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.24 E-value=0.00012 Score=68.65 Aligned_cols=122 Identities=11% Similarity=-0.031 Sum_probs=68.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHH
Q 043758 73 VALGNIEDALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVL 152 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (918)
.+.|++++|+..|++.++.+|. +...+..++..|+..|++++|+..|+.+.+.. +-+...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHH
Confidence 5678888888888888887765 77788888888888888888888888887764 223334444433332222222211
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhC
Q 043758 153 EVVNIMRKKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQ 197 (918)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 197 (918)
........ .+-+++...+......+...|+.++|...+++..+.
T Consensus 85 ~~~~~~~~-~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKV-LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEEC-CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhc-ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 11110000 000111112222334455566666666666666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.99 E-value=0.0011 Score=56.34 Aligned_cols=63 Identities=11% Similarity=-0.172 Sum_probs=40.9
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHhCC-----C-CC----CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043758 832 TYEHLLECFCANCLSIPAFNMFKEMIVHD-----H-VP----CLSNCNWLLNILCQEKHFHEAQIVLDVMHKR 894 (918)
Q Consensus 832 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 894 (918)
.|..+..+|.+.|++++|...+++.++.. . +. ...+++.++.+|...|++++|...+++..+.
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555566666666655555554310 0 11 1235788999999999999999999998764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.61 E-value=0.01 Score=50.08 Aligned_cols=91 Identities=13% Similarity=0.022 Sum_probs=52.3
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCC-CCc----------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-
Q 043758 732 FLLLCGVGRMDDAYDHFQMMKREGL-RPN----------QVTFCILINGHIAAGEIDQAIGLFNQMNAD-----GCVPD- 794 (918)
Q Consensus 732 ~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~p~- 794 (918)
...+.+.|++++|+..|++.++... .|+ ..+|+.+..+|...|++++|+..+++.+.. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3445566777777777777665210 011 235666667777777777777776666542 11111
Q ss_pred ----HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043758 795 ----KTVYNTLLKGLCQAGRLSHVFSVFYSMH 822 (918)
Q Consensus 795 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 822 (918)
...|+.+..+|...|++++|+..|++..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1234555666666666666666666654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.0076 Score=45.50 Aligned_cols=71 Identities=11% Similarity=-0.100 Sum_probs=32.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHH
Q 043758 800 TLLKGLCQAGRLSHVFSVFYSMHKR-----GFVPK-KATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWL 871 (918)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 871 (918)
.+...+.+.|++++|+..+++..+. ...++ ..++..+..++.+.|++++|...++++++.. |.++.++..+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~Nl 86 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3444455555555555555444321 01111 2244455555555555555555555555544 4444444443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.23 E-value=0.0059 Score=46.12 Aligned_cols=65 Identities=5% Similarity=-0.093 Sum_probs=43.9
Q ss_pred HhcCChHHHHHHHHHHHhCC-----CCCC-hhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHH
Q 043758 73 VALGNIEDALRHFDRLISKN-----IVPI-KLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVL 138 (918)
Q Consensus 73 ~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 138 (918)
.+.|+++.|...|+++++.. ..++ ..+++.+..++.+.|++++|+..|+++++.. |-+..+++.+
T Consensus 16 ~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~Nl 86 (95)
T d1tjca_ 16 YTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANGNL 86 (95)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 45555555555555554321 1122 4578899999999999999999999999886 4445555544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.89 Score=45.61 Aligned_cols=132 Identities=10% Similarity=0.002 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhH
Q 043758 774 GEIDQAIGLFNQMNADGCVPDKTVYNTLLK----GLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPA 849 (918)
Q Consensus 774 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 849 (918)
.+.+.|..++........ .+..-+..+-. .+...+..+.|...+......+ .+.......+....+.++...+
T Consensus 228 ~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 577788888877766421 22222222222 2233456677777776665432 3444333344444566788888
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccchhhhccccccc
Q 043758 850 FNMFKEMIVHDHVPCLSNCNWLLNILCQEKHFHEAQIVLDVMHKRGRLPCTSTRGFWRKHFIGKE 914 (918)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 914 (918)
...+..+.... ...+...+-+++++.+.|+.++|...+..+... + +..+++.-..+|++
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~--~fYG~LAa~~Lg~~ 363 (450)
T d1qsaa1 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R--GFYPMVAAQRIGEE 363 (450)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C--SHHHHHHHHHTTCC
T ss_pred HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---C--ChHHHHHHHHcCCC
Confidence 88887764321 223556688899999999999999999887642 2 47888887777764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.63 E-value=1.3 Score=44.31 Aligned_cols=287 Identities=10% Similarity=-0.013 Sum_probs=127.2
Q ss_pred hhhhhhhhhHHHHHHHHHhccCChhhHHHHHHHHHHcCCCcCcccHHHHHHHHHHcCCchhHH---hhhhhhhHhcCChH
Q 043758 3 LINRGLIASAQQVIQRLIANSASLSDALSAADFAAVRGMRFDSGSYSALMKKLIKFGQSQSAL---LLYQNDFVALGNIE 79 (918)
Q Consensus 3 ~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~---~~~~~~~~~~g~~~ 79 (918)
++++|+..++.++...+ ++.| .- ....+..+.......+ ...+...+.+.++...+. .-+...+.+.++.+
T Consensus 16 a~~~~~~~~~~~~~~~L-~dyp-L~-pYl~~~~l~~~~~~~~---~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~ 89 (450)
T d1qsaa1 16 AWDNRQMDVVEQMMPGL-KDYP-LY-PYLEYRQITDDLMNQP---AVTVTNFVRANPTLPPARTLQSRFVNELARREDWR 89 (450)
T ss_dssp HHHTTCHHHHHHHSGGG-TTST-TH-HHHHHHHHHHTGGGCC---HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHhhh-cCCC-CH-HHHHHHHHHhccccCC---HHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHH
Confidence 45667777777777765 3444 22 1222333333322222 233444444455544433 33334446666665
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHhhchhcHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHcCCChhHHHHHHHHHH
Q 043758 80 DALRHFDRLISKNIVPIKLACVSILRGLFAEEKFLEAFDYFIKICNAGVDLNCWSYNVLIDGLCYKGFLDEVLEVVNIMR 159 (918)
Q Consensus 80 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (918)
..+..+. .. +++...--..+.++...|+..+|......+...| ......+..+...+...|.+
T Consensus 90 ~~~~~~~----~~-p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~~~l----------- 152 (450)
T d1qsaa1 90 GLLAFSP----EK-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ----------- 152 (450)
T ss_dssp HHHHHCC----SC-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS-----------
T ss_pred HHHHhcc----CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHHHhcCCC-----------
Confidence 5333221 11 1233333356666677777777777777666554 22333444444444333222
Q ss_pred hcCCCCCCcccHHHHHHHHhccCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCChh
Q 043758 160 KKKGLVPALHPYKSLFYALCKNIRTVEAESFAREMESQGFYVDKLMYTSLINGYCSNRNMKMAMRLFFRMLKTGCEPDSY 239 (918)
Q Consensus 160 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 239 (918)
+...+-..+......|++..|..+...+... .......++...- +...+..... .. .++..
T Consensus 153 -------t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~---~p~~~~~~~~---~~--~~~~~ 213 (450)
T d1qsaa1 153 -------DPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLAN---NPNTVLTFAR---TT--GATDF 213 (450)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHH---CGGGHHHHHH---HS--CCCHH
T ss_pred -------CHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHh---ChHhHHHHHh---cC--CCChh
Confidence 2222222333344456666666554432221 2223333333332 1222222211 11 22222
Q ss_pred hHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCccHhhHH----HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHH
Q 043758 240 TCNTLIHGFFK--MGLFDKGWVLYSQMSDWGFQPNMVTDL----IMISNYCREGEVDAALMLLNSKVSSNLAPSVHCYTV 313 (918)
Q Consensus 240 ~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 313 (918)
....+..++.+ ..+.+.+..++....... ..+..... .+.......+..+.+...+......+ .+.....-
T Consensus 214 ~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w 290 (450)
T d1qsaa1 214 TRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIER 290 (450)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHH
T ss_pred hhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHH
Confidence 22222223222 235666666666665432 11111111 12222233455666666666655543 23333333
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 043758 314 LIDALYKHNRLMEVDELYKKM 334 (918)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~ 334 (918)
.+......+++..+...++.|
T Consensus 291 ~~~~al~~~~~~~~~~~~~~l 311 (450)
T d1qsaa1 291 RVRMALGTGDRRGLNTWLARL 311 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHcCChHHHHHHHHhc
Confidence 444455667777777776665
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.20 E-value=0.14 Score=41.22 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHhcC
Q 043758 183 RTVEAESFAREMESQGFYVDKLMYTSLINGYCS----NRNMKMAMRLFFRMLKTG 233 (918)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 233 (918)
++++|.++|++..+.| ++.....|...|.. ..+.++|..+|++..+.|
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 3455555555555443 33444444444433 345666666666665554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.19 E-value=0.13 Score=41.33 Aligned_cols=49 Identities=12% Similarity=-0.016 Sum_probs=26.8
Q ss_pred ChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 043758 845 LSIPAFNMFKEMIVHDHVPCLSNCNWLLNILCQ----EKHFHEAQIVLDVMHKRGR 896 (918)
Q Consensus 845 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 896 (918)
+.++|.+.+++..+.+ ++.+...|+.+|.. ..+.++|.+++++..+.|.
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 4455555555555544 23345555555554 3456666666666666553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.90 E-value=0.54 Score=35.67 Aligned_cols=68 Identities=16% Similarity=0.030 Sum_probs=57.0
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 043758 574 GSYPYTALISGLVKKGMVDLGCMYLDRMLADGFVPNVVLYTALINHFLRAGEFEFASRLENLMVTNQIE 642 (918)
Q Consensus 574 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 642 (918)
+...+...++.+..+|+-+.-.++++.+.+.+ ++++...-.+..+|.+.|...++-+++.+.-+.|++
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 44556677888889999999999999987755 889999999999999999999999999999888765
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.59 E-value=0.65 Score=35.20 Aligned_cols=140 Identities=10% Similarity=0.024 Sum_probs=78.0
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhcccCccccCChHHHHHHHHHHHHcCCC
Q 043758 423 LCKGGKYEKAYVCLFQLVNFGYRPLVFTCNTLIKCFYQVGFLEGANAIVELMQDTEGNCKWGNLDSALDILDQMEVRGPK 502 (918)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 502 (918)
+.-.|..++..+++.+.... .+..-++.+|-.....-+-+-..+.++.+-+.-...+++++......+-.+-.
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~---- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT---- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC----
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcc----
Confidence 44567888888888877753 34455666665555554444444444444443334445555555444433321
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 043758 503 PSVAIYDAIIGHLCKEKRILEAEDMFKRMLKAGIDPDEVFFTTMINGYLQNRKPIEACQLFEKMKENSV 571 (918)
Q Consensus 503 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 571 (918)
+....+..++.+.+.|+-+.-.++++.+.+.+ .+++...-.+..+|.+.|...++-+++.+.-+.|+
T Consensus 85 -~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 85 -LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred -hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 33344555566666666666666666655543 55555555666666666666666666666655553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.53 E-value=0.17 Score=39.07 Aligned_cols=67 Identities=4% Similarity=-0.059 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHccCC---hhhHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043758 828 PKKATYEHLLECFCANCL---SIPAFNMFKEMIVHDHVPCL-SNCNWLLNILCQEKHFHEAQIVLDVMHKRG 895 (918)
Q Consensus 828 p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 895 (918)
|+..+--....++.++.+ .++++.+++.+.+.+ |.+. ..++.|+.+|.+.|++++|++.++.+++..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 444455555555555543 345666666666543 4442 456667777777777777777777666655
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.71 E-value=0.6 Score=35.93 Aligned_cols=67 Identities=10% Similarity=-0.022 Sum_probs=47.3
Q ss_pred CCCChhhHHHHHHHhhc---hhcHHHHHHHHHHHhhcCCCCc-chhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 043758 93 IVPIKLACVSILRGLFA---EEKFLEAFDYFIKICNAGVDLN-CWSYNVLIDGLCYKGFLDEVLEVVNIMRK 160 (918)
Q Consensus 93 ~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (918)
..|++.+....+-++.+ ..+.++++.+++++.+.+ +.+ ...+..+.-+|.+.|++++|++.++.+.+
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33455555555555543 366788888988888654 323 35677788888889999999999998887
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.72 E-value=5.6 Score=28.45 Aligned_cols=61 Identities=11% Similarity=0.191 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043758 776 IDQAIGLFNQMNADGCVPDKTVYNTLLKGLCQAGRLSHVFSVFYSMHKRGFVPKKATYEHLL 837 (918)
Q Consensus 776 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 837 (918)
.=++.+-++.+....+.|++....+.+.+|.+-+++.-|+++++-...+ ..++...|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 3345555555555566777777777777777777777777777666532 223344555444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.31 E-value=2.4 Score=30.36 Aligned_cols=61 Identities=8% Similarity=0.013 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCCcccHHHHH
Q 043758 811 LSHVFSVFYSMHKRGFVPKKATYEHLLECFCANCLSIPAFNMFKEMIVHDHVPCLSNCNWLL 872 (918)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 872 (918)
.=+..+-++.+....+.|++.+..+.+.+|.|.+++..|.++++....+. .++...|..+.
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 33555667777777789999999999999999999999999999887543 33455555443
|