Citrus Sinensis ID: 043760

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
Protein Sequence
MAGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELAVTQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKLNAAMVVASVISTMGFQAAVDPPQSPELAASSFVVWNTIGVDARFRFSSFYDQDLCSINFITTRGSPRKASSPEVPAHTD
Secondary Structure (PSIPRED)
ccccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHccccccHHHHHHHHHHHcHHHHcccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHcccccccHHHHHccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccccccHHHHHHHHHccccccccccccccHHHHHHcccHHHHHHHccccHHHHHccccccHHHHHHccccHHHHHHHHHccccHHHcccccccHHHHHHHcccEEEEEEEcEEccccccccccccccHcccccccHHccccccccccc
Coil and Loop (DISEMBL)
MAGSVNTLLElrqqdplilerptvnclsetPLHVAALLGHedfakeilpqkpriaeeldsrkssalhiASQKGYVGIVKALLQVipdkcsdtdvdgrnplhLAAMRGHIDVLEELVRakpdaastrLIWVGSTEVLLEnmgdfellnakddyGMTILLLAVADKQIEAIKFLTTSTAIEVNavtangftAWDILAQSKRDIKDWDTGELLRRAgaisakdlqlpvNELAVTQtnsvtshennqkhegkkdlkgtpwnlDDWLEKKLNAAMVVASVISTMgfqaavdppqspelaaSSFVVWNTigvdarfrfssfydqdlcsinfittrgsprkasspevpahtd
Flexible Loop (DISEMBL)
magsvntllelrqqdplilERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNavtangftawDILAQSKRDIKDWDTGELLRRAGaisakdlqlpvNELAVTQTnsvtshennqkhegkkdlkgtpWNLDDWLEKKLNAAMVVASVISTMGFQAAVDPPQSPELAASSFVVWNTIGVDARFRFSSFYDQDLCSInfittrgsprkasspevpahtd
Low Complexity Region (SEG)
MAGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELAVTQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKLNAAMVVASVISTMGFQAAVDPPQSPELAASSFVVWNTIGVDARFRFSSFYDQDLCSINFITTRGSPRKASSPEVPAHTD
Disordered region (IsUnstruct)
**************DPLILERPTVNCLSETPLHVAALLGHEDFAKEIL*****************LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELA************************TPWNLDDWLEKKLNAAMVVASVISTMGFQAAV*******LAASSFVVWNTIGVDARFRFSSFYDQDLCSINFITT*****************
Disordered Region (DISOPRED)
MAGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELAVT********************KGTPWNLDDWLEKKLNAAMVVASVISTMGFQAAVDPPQSPELAASSFVVWNTIGVDARFRFSSFYDQDLCSINFI*******************
Disordered Region (DISEMBL)
MAGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELAVTQ*****************DLKGTPWNLDDWLEKKLNAAMVVASVISTMGFQAAVDPPQSPELAASSFVVWNTIGVDARFRFSSFYDQDLCSINFITTR****************
Disordered Region (DISPRO)
MAGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELAVTQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKLNAAMVVASVISTMGFQAAVDPPQSPELAASSFVVWNTIGVDARFRFSSFYDQDLCSINFITT*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELAVTQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKLNAAMVVASVISTMGFQAAVDPPQSPELAASSFVVWNTIGVDARFRFSSFYDQDLCSINFITTRGSPRKASSPEVPAHTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	345	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.782	0.457	0.256	6e-12
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.747	0.484	0.259	3e-11
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.721	0.475	0.248	3e-10
Q5F478	990	Serine/threonine-protein	yes	no	0.466	0.162	0.282	2e-09
Q9ERK0	786	Receptor-interacting seri	yes	no	0.342	0.150	0.316	5e-09
Q8N8A2	993	Serine/threonine-protein	yes	no	0.515	0.179	0.287	2e-08
B2RXR6	993	Serine/threonine-protein	no	no	0.455	0.158	0.323	4e-08
Q3EC11	536	Probable S-acyltransferas	no	no	0.463	0.298	0.303	6e-08
Q54F46	803	Homeobox protein Wariai O	yes	no	0.498	0.214	0.297	9e-08
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.542	0.099	0.283	1e-07

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 131/312 (41%), Gaps = 42/312 (13%)

Query: 31  PLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCS 90
           PLH+AA+ GH    + +L     +++      ++ L  A+ +G+  +V  LL    +   
Sbjct: 167 PLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLE 226

Query: 91  DTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMG--------- 141
            +  + +N LHLAA +GH++V++ L+   P  A  R+   G T + +   G         
Sbjct: 227 ISRSNNKNALHLAARQGHVEVIKALLSKDPQLAR-RIDKKGQTALHMAVKGQSSEVVKLL 285

Query: 142 ---DFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI----- 193
              D  ++   D    T L +A   K+ E ++ L +      N +T +  TA DI     
Sbjct: 286 LDADPAIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLP 345

Query: 194 LAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELAVTQT---NSV------TSHENNQK 244
           L++    IK     E L R+GA+ A +L  P +EL  T T   N V      T   N   
Sbjct: 346 LSEESSYIK-----ECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNV 400

Query: 245 HEGKKDLKGTPWNLDDWLEKKLNAAMVVASVISTMGFQAAVDPPQSPELAASSFVVWNTI 304
           H   K+L+       + +    N+  VVA + +T+ F A    P       S+ VV    
Sbjct: 401 HNISKELRKLHR---EGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVV---- 453

Query: 305 GVDARFRFSSFY 316
               R  F  F+
Sbjct: 454 ---GRASFKIFF 462

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 120/277 (43%), Gaps = 19/277 (6%)

Query: 31  PLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCS 90
             HVAA  GH    KE+L   P +    D+  +S L+ A+ + ++ IV A+L V P    
Sbjct: 97  AFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAM 156

Query: 91  DTDVDGRNPLHLAAMRGHIDVLEEL---------VRAKPDAASTRLIWVG-STEVLLENM 140
               +G+  LH A   G + +++ L         V+ K    +  +   G S EV+ E +
Sbjct: 157 IVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEIL 216

Query: 141 -GDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKR 199
             D+ +LN +D  G T L +A    + +    L T TAIEVNA+     TA D+  + + 
Sbjct: 217 QADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQY 276

Query: 200 DIKDWDTGELLRRAGAISAKDLQLPVNELAVTQTNSVTSHENN----QKHEGKKDLKGTP 255
                +  E L  AGA   + +       A+ +  S   HE      Q  +  + + G  
Sbjct: 277 SESALEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIA 336

Query: 256 WNL----DDWLEKKLNAAMVVASVISTMGFQAAVDPP 288
             L     + ++   N+  VVA + +++ F A  + P
Sbjct: 337 KELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLP 373

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 132/286 (46%), Gaps = 37/286 (12%)

Query: 32  LHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSD 91
            H+AA  G+      ++   P ++   DS K++ALH A+ +G+  IV  LL    D  + 
Sbjct: 95  FHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAI 154

Query: 92  TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGST--------------EVLL 137
              +G+  LH AA  GH  ++++L+  K     TR+   G T              +VL+
Sbjct: 155 ARSNGKTALHSAARNGHTVIVKKLIEKKAGMV-TRVDKKGQTALHMAVKGQNTEIVDVLM 213

Query: 138 ENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQS 197
           E   D  L+N+ D+ G T L +AV   + E ++ +     +   AV  +G TA DI  ++
Sbjct: 214 E--ADGSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKT 271

Query: 198 KRDIKDWDTGELLRRAGAISAKDLQLPVNEL-------AVTQTNSVTSHENN----QKHE 246
                  +   LL++ G  +A+ ++ P  ++        + +T S   HE +    Q   
Sbjct: 272 GL----HEIVPLLQKIGMQNARSIK-PAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGR 326

Query: 247 GKKDLKGTPWNLD----DWLEKKLNAAMVVASVISTMGFQAAVDPP 288
            +++++G    ++    + L   +N+  +VA +I+T+ F A  + P
Sbjct: 327 TRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVP 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 30/191 (15%)

Query: 27  LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVI- 85
           L  T LH   + GHE+  + +L ++  I  + D+R  + LH A+ +G+   +  LLQ+  
Sbjct: 699 LGCTALHRGIMTGHEECVQMLLEKEVSILCK-DARGRTPLHFAAARGHATWLSELLQIAL 757

Query: 86  -PDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAK------------------PDAASTR 126
             + CS  D  G  PLH A   GH + +E L+  K                   D  +  
Sbjct: 758 SEEDCSLKDNQGYTPLHWACYNGHENCIEVLLEQKFFRKFYGNSFSPLHCAVINDHENCA 817

Query: 127 LIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTAN 186
            + +G+         D  ++N KDD G T L  A     +E ++ L + +A +VNAV   
Sbjct: 818 SMLIGAI--------DASIVNCKDDKGRTPLHAAAFADHVECLQLLLSHSA-QVNAVDHA 868

Query: 187 GFTAWDILAQS 197
           G TA  + AQ+
Sbjct: 869 GKTALMMAAQN 879

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q9ERK0|RIPK4_MOUSE Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 37/155 (23%)

Query: 28  SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
           ++TPLHVAA  GH   A+ +L  +    E L S   +ALH+A+Q G++  VK L++    
Sbjct: 639 AQTPLHVAAETGHTSTAR-LLLHRGAGKEALTSEGYTALHLAAQNGHLATVKLLIE---- 693

Query: 88  KCSDTDVDGRNPL-----HLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGD 142
                DV  R PL     HLAA RGH +V+EELV A                        
Sbjct: 694 --EKADVMARGPLNQTALHLAAARGHSEVVEELVSA------------------------ 727

Query: 143 FELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTA 177
            +L++  D+ G++ L LA   +  + ++ L    A
Sbjct: 728 -DLIDLSDEQGLSALHLAAQGRHSQTVETLLKHGA 761

Involved in stratified epithelial development (By similarity). It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 24/202 (11%)

Query: 17  LILERP----TVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQK 72
           L+LE+     TV+ L  T LH   + GHE+  + +L Q+  I  + DSR  + LH A+ +
Sbjct: 688 LLLEKEANVDTVDILGCTALHRGIMTGHEECVQMLLEQEVSILCK-DSRGRTPLHYAAAR 746

Query: 73  GYVGIVKALLQVI--PDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIW- 129
           G+   +  LLQ+    + C   D  G  PLH A   G+ + +E L+  K      + I  
Sbjct: 747 GHATWLSELLQMALSEEDCCFKDNQGYTPLHWACYNGNENCIEVLLEQK---CFRKFIGN 803

Query: 130 ------------VGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTA 177
                        G+   LL    D  +++ +DD G T L  A     +E ++ L   +A
Sbjct: 804 PFTPLHCAIINDHGNCASLLLGAIDSSIVSCRDDKGRTPLHAAAFADHVECLQLLLRHSA 863

Query: 178 IEVNAVTANGFTAWDILAQSKR 199
             VNAV  +G TA  + A++ +
Sbjct: 864 -PVNAVDNSGKTALMMAAENGQ 884

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

>sp|B2RXR6|ANR44_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Mus musculus GN=Ankrd44 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 16/173 (9%)

Query: 32  LHVAALLGHEDFAKEILPQKPRIAEELDSRK-SSALHIASQKGYVGIVKALLQVIPDKCS 90
           +H AA  GH    + +L +     EE D     S LH+A+  G+   ++ LLQ + D   
Sbjct: 536 IHYAAAYGHRQCLELLLERTNTGFEESDGGALKSPLHLAAYNGHHQALEVLLQSLVDL-D 594

Query: 91  DTDVDGRNPLHLAAMRGHIDVLEELV-------------RAKPDAASTRLIWVGSTEVLL 137
             D  GR  L+LAA +GH + +E LV             +  P  AS          +LL
Sbjct: 595 IRDEKGRTALYLAAFKGHTECVEALVNQGASIFVKDNVTKRTPLHASVINGHTLCLRLLL 654

Query: 138 ENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
           E   + E+++ KD  G T L+LAVA   I+A+  L    A  V+AV   G TA
Sbjct: 655 ETADNPEVVDVKDAKGQTPLMLAVAYGHIDAVSLLLEKEA-NVDAVDIVGCTA 706

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

>sp|Q3EC11|ZDHC2_ARATH Probable S-acyltransferase At2g14255 OS=Arabidopsis thaliana GN=At2g14255 PE=2 SV=2

 Score = 58.9 bits (141), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 18/178 (10%)

Query: 27  LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
           + +TPLH AA+ G  D A  +L    RI E +D     A+H+ASQ G    V     +I 
Sbjct: 90  IQQTPLHWAAVKGSIDVADLLLQHGARI-EAVDVNGFRAVHVASQYGQTAFVN---HIIV 145

Query: 87  DKCSDT---DVDGRNPLHLAAMRGHIDVLEELV------RAKPDAASTRLIWVGSTE--- 134
           D  +D    D++GR+PLH AA  G  + +  L+        + +   T L W    E   
Sbjct: 146 DYAADYNALDIEGRSPLHWAAYNGFTETVRLLLFRDACQNRQDNTGCTPLHWAVIKENVE 205

Query: 135 --VLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
              LL + G  E L  KD+ G T L LA      +   FL+ +     N+     F  
Sbjct: 206 ACTLLVHAGTKEELILKDNTGSTPLKLASDKGHRQLALFLSKAMRTRKNSFVDKIFCG 263

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q54F46|WARA_DICDI Homeobox protein Wariai OS=Dictyostelium discoideum GN=warA PE=2 SV=1

 Score = 58.2 bits (139), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 87/195 (44%), Gaps = 23/195 (11%)

Query: 5   VNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSS 64
           V  LLE R  DP ++    V     +PL  A   GH   A  +L     ++ +      +
Sbjct: 424 VELLLEHRA-DPNLVNDEGV-----SPLFSACKGGHLQIASSLLDHDAEVSVKTKINGET 477

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAS 124
            LHIAS KG+  I K L++    K S  D + R PLH A + G+  + + L+    D  +
Sbjct: 478 PLHIASLKGFEKICKLLIET-EAKASVIDSNNRTPLHHACIMGYFSIAKLLICNGADMNA 536

Query: 125 TRL-----IWVGS-------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFL 172
             +     +   S       T +LLEN  D    N +D  G T +  AV + +IE +KFL
Sbjct: 537 IDIDGHTPLHTSSLMGHDLITRLLLENGAD---PNIQDSEGYTPIHYAVRESRIETVKFL 593

Query: 173 TTSTAIEVNAVTANG 187
               + ++N  T NG
Sbjct: 594 IKFNS-KLNIKTKNG 607

Putative transcription factor, that seems to be involved in anterior-posterior patterning of the slug, probably by controlling the proportions of prestalk and prespore cells.

Dictyostelium discoideum (taxid: 44689)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 25/212 (11%)

Query: 25  NCLSETPLHVAALLGHEDFAKEILPQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQ 83
           N   ETPLH+AA  GH + AK +L  K ++ A+  D +  + LH A++ G+  +VK LL+
Sbjct: 434 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ--TPLHCAARIGHTNMVKLLLE 491

Query: 84  VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAK------------PDAASTRLIWVG 131
              +    T   G  PLH+AA  GH++ +  L+  +            P   + +   V 
Sbjct: 492 NNANPNLATTA-GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 550

Query: 132 STEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAW 191
             E+LLE        NA    G+T L +AV    ++ +K L        ++   NG+T  
Sbjct: 551 VAELLLERDAH---PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYTPL 606

Query: 192 DILA-QSKRDIKDWDTGELLRRAGAISAKDLQ 222
            I A Q++ ++       LL+  G+ +A+ +Q
Sbjct: 607 HIAAKQNQVEVAR----SLLQYGGSANAESVQ 634

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
343887300	469	ankyrin repeat family protein [Citrus un	0.823	0.605	0.516	6e-74
343887301	470	Ankyrin repeat family protein [Citrus un	0.886	0.651	0.489	8e-74
343887299	477	ankyrin repeat family protein [Citrus un	0.828	0.599	0.519	4e-73
359475962	486	PREDICTED: ankyrin repeat-containing pro	0.826	0.586	0.503	7e-72
343887311	473	ankyrin repeat family protein [Citrus un	0.8	0.583	0.488	8e-66
296081692	444	unnamed protein product [Vitis vinifera]	0.733	0.569	0.498	1e-61
359475964	491	PREDICTED: ankyrin repeat-containing pro	0.797	0.560	0.498	7e-61
224088778	491	predicted protein [Populus trichocarpa]	0.794	0.558	0.456	2e-57
224092119	471	predicted protein [Populus trichocarpa]	0.773	0.566	0.416	2e-53
225444809	514	PREDICTED: ankyrin repeat-containing pro	0.828	0.556	0.415	5e-53

>gi|343887300|dbj|BAK61846.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  283 bits (725), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 156/302 (51%), Positives = 204/302 (67%), Gaps = 18/302 (5%)

Query: 3   GSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRK 62
           GSV +LL+L Q+D L+L+R  V+C SETPLH+A++LGHE F +EIL +KP +A ELDSR+
Sbjct: 12  GSVESLLKLLQEDALLLDRSMVSCYSETPLHIASMLGHESFVREILSRKPELAGELDSRR 71

Query: 63  SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDA 122
           SSALH A+ KG++GIV  LL V P  C   D DG+NPLH+AA++GH++VL ELV+ +P A
Sbjct: 72  SSALHFAAAKGHLGIVLKLLSVNPKMCCACDRDGKNPLHVAAIKGHVNVLRELVQVRPKA 131

Query: 123 ASTRLIWVGST--------------EVLLENMGDFELLNAKDDYGMTILLLAVADKQIEA 168
               L+  G T              ++L+E + D E +N+KDD G TIL LAV DKQ+EA
Sbjct: 132 CRI-LMDRGETILHACVNYNQLECLKLLVETLNDHEFVNSKDDDGNTILHLAVIDKQVEA 190

Query: 169 IKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNEL 228
           +KFLT ST IEVNAV ANGFTA DILAQ K D+     GELLR AGA S K+ + P +  
Sbjct: 191 VKFLTGSTTIEVNAVNANGFTALDILAQRKLDMNS-TIGELLRCAGARSLKETREPASGT 249

Query: 229 AVTQTNS-VTSHENNQKHEGK-KDLKGTPWNLDDWLEKKLNAAMVVASVISTMGFQAAVD 286
             T+T S +TSH  +  ++G+ +  K      D W EKK N  MVVAS+I+TM FQA ++
Sbjct: 250 TKTRTGSIITSHSGDPSNQGRERPEKARKKQEDKWSEKKRNTLMVVASLIATMAFQAGLN 309

Query: 287 PP 288
           PP
Sbjct: 310 PP 311

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887301|dbj|BAK61847.1| Ankyrin repeat family protein [Citrus unshiu]

 Score =  283 bits (724), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 165/337 (48%), Positives = 220/337 (65%), Gaps = 31/337 (9%)

Query: 3   GSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRK 62
           GSV +LL+L Q+D L+L+R  V+C SETPLHVA++LGHE+F +EIL +KP +A ELDSR+
Sbjct: 12  GSVESLLKLLQEDALLLDRSMVSCYSETPLHVASMLGHENFVREILSRKPELAGELDSRR 71

Query: 63  SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDA 122
           SSALH+A+ KG++GIV  L+ V P  C   D DG+NPLH+AA++GH++VL ELV+ +P A
Sbjct: 72  SSALHLAAAKGHLGIVLKLVSVNPKMCCACDRDGKNPLHVAAIKGHVNVLRELVQVRPKA 131

Query: 123 ASTRLIWVGST--------------EVLLENMGDFELLNAKDDYGMTILLLAVADKQIEA 168
               L+  G T              ++L+E + D E +N+KDD G TIL LAV DKQ+E 
Sbjct: 132 CRI-LMDRGETILHACVNYNQLECLKLLVETLNDHEFVNSKDDDGNTILHLAVIDKQVET 190

Query: 169 IKFLTTS-TAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNE 227
           IKFLT S T +EVNAV ANGFTA DILA+ K D+ +W  GELLR AGA S K+ + P   
Sbjct: 191 IKFLTDSCTTLEVNAVNANGFTALDILARRKLDV-NWTIGELLRCAGARSQKETREPSPA 249

Query: 228 LAVTQTNS-VTSHENNQKHEGK-KDLKGTPWNLDDWLEKKLNAAMVVASVISTMGFQAAV 285
           +  T T S +TSH ++  ++G+ +  K      D+W EKK NA MVVAS+I+TM FQAA+
Sbjct: 250 ITQTPTGSIITSHSDDPSNQGRERPEKVRKKQEDEWSEKKRNALMVVASLIATMAFQAAL 309

Query: 286 DPP------------QSPELAASSFVVWNTIGVDARF 310
           +PP             SP  A SS ++ N   V   F
Sbjct: 310 NPPGGVWQDDSQANDTSPHDAGSSIMLTNVESVYYLF 346

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887299|dbj|BAK61845.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 161/310 (51%), Positives = 201/310 (64%), Gaps = 24/310 (7%)

Query: 3   GSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRK 62
           G++ TLL+L +QDPLIL++   N   ETPLHVAAL GH  FAKEIL + P +A ELDSR 
Sbjct: 15  GNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRG 74

Query: 63  SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDA 122
           SS LH+A+QKGYV IVK LLQV PD C   DVDGRNPLH+AAM+G I VL EL RA+P A
Sbjct: 75  SSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFA 134

Query: 123 ASTRLIW-------------VGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAI 169
           A +  IW               + + L+  M D + LNAKDDYGM+IL LAVADKQIE I
Sbjct: 135 AYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETI 194

Query: 170 KFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELA 229
            +L  +T +EVNA+  +G+TA DILAQS+RDIKD D  + LR AGA  A ++Q  +N  +
Sbjct: 195 NYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFKAIEIQSSLNRNS 254

Query: 230 VTQTNSVTSHENNQKHEGKKD-LKGTPW----NL------DDWLEKKLNAAMVVASVIST 278
            +   SV ++          D LK  P     NL      +DWL +K +A MVVAS+I+T
Sbjct: 255 TSIGRSVRNNRAVSNSIIPHDQLKALPQECLINLQQKNKTEDWLTRKRDALMVVASLIAT 314

Query: 279 MGFQAAVDPP 288
           M FQA V+PP
Sbjct: 315 MAFQAGVNPP 324

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475962|ref|XP_002279591.2| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  276 bits (707), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 152/302 (50%), Positives = 200/302 (66%), Gaps = 17/302 (5%)

Query: 3   GSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRK 62
           GSV +L EL  +DPLI++R  +N  +ETPLH+AALLGH DFAKEIL QKP +A ELD R+
Sbjct: 9   GSVTSLYELLLKDPLIIDRVMLN-YTETPLHIAALLGHADFAKEILLQKPELAAELDYRR 67

Query: 63  SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDA 122
           SS LH+A+ KGY+ IVK LL V P+ C   D DGRNP+HLAAMRGH+ VL+ELV+AKP A
Sbjct: 68  SSPLHLAAAKGYIEIVKELLFVNPEMCLACDRDGRNPVHLAAMRGHVHVLKELVQAKPHA 127

Query: 123 A-------------STRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAI 169
                           +   + + ++L+E     E+++AKDD G TIL LAVADKQ+E I
Sbjct: 128 TWAALPRGETILHLCVKHNQLEALKLLVETADAHEIMSAKDDNGFTILHLAVADKQLETI 187

Query: 170 KFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELA 229
            +L +ST+IEVNAV  NG TA DILAQS+RD++D +  ELLR  GA  AK++     E  
Sbjct: 188 NYLLSSTSIEVNAVNLNGCTASDILAQSRRDVQDMEISELLRHVGAAKAKNISFSAYEFG 247

Query: 230 VTQTNSVTSHENNQKHEG---KKDLKGTPWNLDDWLEKKLNAAMVVASVISTMGFQAAVD 286
            ++T  ++S  ++Q        K+        DDWL+K+ +A MVVAS+I+TM FQA V 
Sbjct: 248 SSRTRGMSSDADDQNRVPCPIGKNCNEFNKKKDDWLDKQQSALMVVASLIATMAFQAGVS 307

Query: 287 PP 288
           PP
Sbjct: 308 PP 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887311|dbj|BAK61857.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  256 bits (655), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 146/299 (48%), Positives = 189/299 (63%), Gaps = 23/299 (7%)

Query: 3   GSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRK 62
           GSV +L+ L Q+D L+L+R  V+C +ETPLH+A++LGH DF +EI+ QKP +A ELDSRK
Sbjct: 12  GSVASLIHLLQEDALVLDRFMVSCHAETPLHIASMLGHVDFVQEIVSQKPELAGELDSRK 71

Query: 63  SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDA 122
           +S LH+AS KGY+ IVK L+ V P+ C   D DGRNPLH+AA++GH++VL ELV+ +P A
Sbjct: 72  ASPLHVASAKGYLVIVKKLVSVNPEMCYVRDRDGRNPLHVAAIKGHVNVLRELVQVRPQA 131

Query: 123 -------------ASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAI 169
                        A  R   + S + LL+ + D E +N K++ G TIL LAVADKQ EAI
Sbjct: 132 ARMLMDRGETILHACVRYNQLESMKFLLDILSDREFVNYKNNDGNTILHLAVADKQTEAI 191

Query: 170 KFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELA 229
           K LTTST IEVNA+ ANG  A DIL Q K D KD +  ELL RA AISA+D      +  
Sbjct: 192 KVLTTSTTIEVNALNANGLAALDILPQIKGDEKDSEIIELLGRASAISARDEGKKKKKKK 251

Query: 230 VTQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKLNAAMVVASVISTMGFQAAVDPP 288
               +   SH NN     + +         DWL KK +  MVVAS+I+TM FQ   +PP
Sbjct: 252 TKTPSK--SHVNNDNLARRDEY--------DWLRKKRSTLMVVASLIATMAFQVGANPP 300

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081692|emb|CBI20697.3| unnamed protein product [Vitis vinifera]

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 134/269 (49%), Positives = 175/269 (65%), Gaps = 16/269 (5%)

Query: 36  ALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVD 95
           ALLGH DFAKEIL QKP +A ELD R+SS LH+A+ KGY+ IVK LL V P+ C   D D
Sbjct: 14  ALLGHADFAKEILLQKPELAAELDYRRSSPLHLAAAKGYIEIVKELLFVNPEMCLACDRD 73

Query: 96  GRNPLHLAAMRGHIDVLEELVRAKPDAA-------------STRLIWVGSTEVLLENMGD 142
           GRNP+HLAAMRGH+ VL+ELV+AKP A                +   + + ++L+E    
Sbjct: 74  GRNPVHLAAMRGHVHVLKELVQAKPHATWAALPRGETILHLCVKHNQLEALKLLVETADA 133

Query: 143 FELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIK 202
            E+++AKDD G TIL LAVADKQ+E I +L +ST+IEVNAV  NG TA DILAQS+RD++
Sbjct: 134 HEIMSAKDDNGFTILHLAVADKQLETINYLLSSTSIEVNAVNLNGCTASDILAQSRRDVQ 193

Query: 203 DWDTGELLRRAGAISAKDLQLPVNELAVTQTNSVTSHENNQKHEG---KKDLKGTPWNLD 259
           D +  ELLR  GA  AK++     E   ++T  ++S  ++Q        K+        D
Sbjct: 194 DMEISELLRHVGAAKAKNISFSAYEFGSSRTRGMSSDADDQNRVPCPIGKNCNEFNKKKD 253

Query: 260 DWLEKKLNAAMVVASVISTMGFQAAVDPP 288
           DWL+K+ +A MVVAS+I+TM FQA V PP
Sbjct: 254 DWLDKQQSALMVVASLIATMAFQAGVSPP 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475964|ref|XP_002279612.2| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  240 bits (613), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 151/303 (49%), Positives = 189/303 (62%), Gaps = 28/303 (9%)

Query: 1   MAGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDS 60
           M GSV +L +L QQD LIL+R  V+C++ETPLHVAA+LGH DF KEIL  KP +A ELDS
Sbjct: 10  MEGSVASLQQLLQQDRLILDRVIVDCITETPLHVAAMLGHTDFVKEILCLKPELARELDS 69

Query: 61  RKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKP 120
           R  S LH+AS KGY  +VKA L V PD C   D  GRNPLHLAAM+G  DVL+ELVRA+P
Sbjct: 70  RGFSPLHLASAKGYTEVVKAFLLVDPDMCFACDRYGRNPLHLAAMKGRFDVLKELVRARP 129

Query: 121 DAASTRLIWVGST--------------EVLLENMGDF-ELLNAKDDYGMTILLLAVADKQ 165
            AA  R    G T              + L+E M D  +L+N +D+ G TIL LAVADKQ
Sbjct: 130 HAARARAE-RGETILHLCVKQNQLEALKFLVETMDDHNDLVNTRDNNGFTILHLAVADKQ 188

Query: 166 IEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPV 225
           IE + +L ++T +EVNA+  +G TA DIL    RD+ D D GE  R  GA+ A +  LP 
Sbjct: 189 IETVNYLLSNTRVEVNALNTSGLTALDILVHGLRDVGDLDIGEAFRGTGAMRAMNTHLPN 248

Query: 226 NELAVTQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKLNAAMVVASVISTMGFQAAV 285
           +   V Q  S          EG + +K      + WL +K +A MVVAS+I+TM FQAAV
Sbjct: 249 HHPQVLQLTS----------EGDRSMKSK--GKEHWLTRKRDALMVVASLIATMAFQAAV 296

Query: 286 DPP 288
           +PP
Sbjct: 297 NPP 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088778|ref|XP_002308536.1| predicted protein [Populus trichocarpa] gi|222854512|gb|EEE92059.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 138/302 (45%), Positives = 190/302 (62%), Gaps = 28/302 (9%)

Query: 3   GSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRK 62
           G+V +LL L Q+D L L+R  V C +ETPLH+AA+LGH +F +EIL +KP +  ELD  +
Sbjct: 53  GNVTSLLILLQEDKLFLDRCAVTCPAETPLHIAAMLGHLEFTREILWRKPDLVNELDLHR 112

Query: 63  SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDA 122
           SS LH+A+  G++ +V+ LL V  D C   D +  NPLH+A ++G IDVL+ELV+AKPDA
Sbjct: 113 SSPLHLATANGHLEVVRVLLLVDADLCLVKDRNRWNPLHVAVIKGRIDVLKELVQAKPDA 172

Query: 123 ASTR------LIWVGSTEVLLE--------NMGDFELLNAKDDYGMTILLLAVADKQIEA 168
             TR      ++ +      LE         + D E +N++DD G TIL LAVAD++IE 
Sbjct: 173 IRTRGQRGETILHLCVKHYQLEALKFLVGITIADTEFVNSEDDDGFTILHLAVADREIEV 232

Query: 169 IKFLTTSTAIEVNAVTANGFTAWDI-LAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNE 227
           I +L + + I+VNA+ ANGFTA DI LAQ +R+IKD D    LR  GAIS+KD+   ++ 
Sbjct: 233 INYLISESPIQVNALNANGFTALDIVLAQGRRNIKDIDIQNTLREGGAISSKDMPSTMHG 292

Query: 228 L-AVTQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKLNAAMVVASVISTMGFQAAVD 286
           L A+   NS T +E N             W   +WLE++ NA MVVAS+I+TM FQA + 
Sbjct: 293 LDAIRPNNSTTLNERN------------CWRKKNWLEERRNALMVVASLIATMAFQAGIS 340

Query: 287 PP 288
           PP
Sbjct: 341 PP 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092119|ref|XP_002309480.1| predicted protein [Populus trichocarpa] gi|222855456|gb|EEE93003.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/288 (41%), Positives = 178/288 (61%), Gaps = 21/288 (7%)

Query: 18  ILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGI 77
           +L+    +C +ETPLH++A+LGH +F ++IL +KP  A+ELD   SS LH+A+  G++ +
Sbjct: 41  VLDGCATDCFTETPLHISAMLGHLEFTRKILCRKPEFAKELDFLGSSPLHLATANGHLEV 100

Query: 78  VKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRL---------- 127
           V+ALL V PD C   + DGRNPLH+A ++G +DVL+ELV+ KP+A   R           
Sbjct: 101 VRALLSVNPDMCFAQNRDGRNPLHIAVIKGRVDVLKELVQNKPEAVLHRTARGETVLHLC 160

Query: 128 ---IWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVT 184
                + + ++L+E + D+  +N+KD+ G T+L LAVADK+IE I FL   T IEVNA+ 
Sbjct: 161 VKHFQLEALKLLVETIKDYGFINSKDEDGSTVLHLAVADKEIEIISFLIMKTEIEVNAIN 220

Query: 185 ANGFTAWDI-LAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELAVTQTNSVTSHENN- 242
           A+GFT  DI LAQ +R+ KD D  + L + GA SAKDL   ++ L      ++ S ++  
Sbjct: 221 ASGFTVLDIALAQGRRNWKDVDVQDSLHQVGASSAKDLSSTMHRLEAVGAVNLRSEDHFT 280

Query: 243 --QKHEGKKDLKGTPWNLDDWLEKKLNAAMVVASVISTMGFQAAVDPP 288
             Q    +K  +   + L +    K NA M+VAS+I+TM FQA + PP
Sbjct: 281 SLQSRLKRKYQRRQSYGLGE----KRNALMIVASLIATMAFQAGISPP 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444809|ref|XP_002278533.1| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 132/318 (41%), Positives = 177/318 (55%), Gaps = 32/318 (10%)

Query: 3   GSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRK 62
           GSVN+L  L  +DPL L R  V C +ETPLHVAA+LGH DFA  +L  KP +   LD R 
Sbjct: 29  GSVNSLKRLIAKDPLTLARAAVTCFNETPLHVAAMLGHLDFASYLLTHKPDMTRALDLRG 88

Query: 63  SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDA 122
            S LH+AS  GYV +V  LL   PD C   D DGR PLHLA M+G ++V   LV A+P  
Sbjct: 89  RSPLHLASANGYVEMVNILLSSNPDACLIRDEDGRMPLHLAVMKGEVEVTRMLVGARPQV 148

Query: 123 ASTRL-------------IWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAI 169
              +L               +G+ ++L+E  G+ E +N+KDDYG T+L  A A KQ E  
Sbjct: 149 TRYKLDQGETILHSAVKQNRLGALKLLVELAGEVEFVNSKDDYGNTVLHTATALKQYETA 208

Query: 170 KFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDL-QLPVNEL 228
           K+L     +EVNAV  NGFTA DI+  + RD+K  +  E L +AGA+S++++  LP    
Sbjct: 209 KYLVERPEMEVNAVNGNGFTALDIIQHTPRDLKGMEIRESLVKAGALSSRNIPALPGKGH 268

Query: 229 AVTQTNSVTSH-ENNQKH-----------EGKKD--LKGTPW----NLDDWLEKKLNAAM 270
            +   + +T   EN Q +           E K    L+G       N  +W  KK +A M
Sbjct: 269 QLMGESGITMVIENPQLYPPPPPPAAVPTEAKTSTPLRGREKKIHENKKEWTMKKRDALM 328

Query: 271 VVASVISTMGFQAAVDPP 288
           V A++I+ M FQAAV+PP
Sbjct: 329 VAATLIAGMAFQAAVNPP 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.733	0.382	0.283	2.4e-15
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.736	0.405	0.291	2.8e-15
TAIR|locus:2172089	426	ANK "ankyrin" [Arabidopsis tha	0.875	0.708	0.259	1.8e-14
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.718	0.408	0.260	4.1e-14
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.698	0.443	0.266	1.2e-10
TAIR|locus:2012557	436	AT1G14500 "AT1G14500" [Arabido	0.8	0.633	0.273	8.7e-13
TAIR|locus:2172099	431	AT5G54620 [Arabidopsis thalian	0.405	0.324	0.319	3.6e-12
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.773	0.501	0.266	1.9e-11
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.669	0.391	0.260	4e-10
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.695	0.542	0.253	1.4e-10

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 2.4e-15, P = 2.4e-15
 Identities = 79/279 (28%), Positives = 134/279 (48%)

Query:    31 PLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCS 90
             P HVAA  GH +  K +L   P +A   D   ++ALH A+ +G++ +V  LL+   +   
Sbjct:   227 PFHVAAKQGHLEVLKILLETFPNLAMTTDLSCTTALHTAATQGHIDVVNLLLETDSNLAK 286

Query:    91 DTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLL----ENMG----- 141
                 +G+  LH AA  GH++V++ L+   P +   R    G T + +    +N G     
Sbjct:   287 IAKNNGKTALHSAARMGHVEVVKSLIGKDP-SIGFRTDKKGQTALHMAVKGQNDGIVVEL 345

Query:   142 ---DFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSK 198
                D  +L+ +D+ G T L +A    +I+ ++ L +   I +N +   G T  D+   S+
Sbjct:   346 VKPDVAVLSVEDNKGNTPLHIATNKGRIKIVRCLVSFEGINLNPINKAGDTPLDV---SE 402

Query:   199 RDIKDWDTGELLRRAGAISAKDLQLPVNELA-VTQTNSVTSHE-NNQKHEGKKD---LKG 253
             + I + +   +L+ AGA +AKDL  P N    + QT S   HE  +Q  + ++    ++ 
Sbjct:   403 K-IGNAELVSVLKEAGAATAKDLGKPQNPAKQLKQTVSDIKHEVQSQLQQSRQTGVRVQK 461

Query:   254 TPWNLD----DWLEKKLNAAMVVASVISTMGFQAAVDPP 288
                 L       L   +N+A VVA +I+T+ F A    P
Sbjct:   462 IAKRLKKLHISGLNNAINSATVVAVLIATVAFAAIFTIP 500

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 81/278 (29%), Positives = 133/278 (47%)

Query:    31 PLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCS 90
             P HVAA  GH +  K++L   P +A  +D   ++ALH A+ +G+  +V  LL+       
Sbjct:   191 PFHVAAKQGHIEALKKLLETFPNLAMTVDLSCTTALHTAASQGHTDVVNLLLKTDSHLAK 250

Query:    91 DTDVDGRNPLHLAAMRGHIDVLEELV--------RA-KPDAASTRLIWVGSTE-VLLENM 140
                 +G+  LH AA  GH +V++ L+        R  K    +  +   G  E ++LE +
Sbjct:   251 IAKNNGKTALHSAARMGHREVVKSLIGNDASIGFRTDKKGQTALHMAVKGQNEGIVLELV 310

Query:   141 G-DFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKR 199
               D  +L+ +D  G T L  A    +I+ ++ L +   I +NA+   G TA DI  +   
Sbjct:   311 KPDPAILSVEDSKGNTPLHTATNKGRIKIVRCLVSFDGINLNAMNKAGDTALDIAEK--- 367

Query:   200 DIKDWDTGELLRRAGAISAKDLQLPVNELA-VTQTNSVTSHE-NNQKHEGKKD---LKGT 254
              I + +   +L+ AGA +AKDL  P N    + QT S   HE  +Q  + ++    ++  
Sbjct:   368 -IGNPELVSVLKEAGAATAKDLGKPRNPAKQLNQTVSDIKHEVQSQLQQSRQTGVRVRRI 426

Query:   255 PWNLD----DWLEKKLNAAMVVASVISTMGFQAAVDPP 288
                L     + L   +N+A VVA +I+T+ F A    P
Sbjct:   427 AKRLKKLHINGLNNAINSATVVAVLIATVAFAAIFTIP 464

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172089 ANK "ankyrin" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 89/343 (25%), Positives = 156/343 (45%)

Query:     2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSR 61
             +GSV+ L  L Q  P IL++  V  +  TPLH A+  G  D A E++  KP  A++L+  
Sbjct:    11 SGSVDDLYSLIQAAPDILQKVDVLPIIHTPLHEASSAGKLDLAMELMILKPSFAKKLNEY 70

Query:    62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
               S LH+A +   V +   L++V P         G  PLHL A +G +D+L + + A P+
Sbjct:    71 GLSPLHLAVENDQVELALELVKVDPSLVRIRGRGGMTPLHLVAKKGDVDLLTDFLLACPE 130

Query:   122 A-------ASTRL-IWVGSTE-----VL---LENMGD-----FELLNAKDDYGMTILLLA 160
             +         T L I + + +     VL   ++ M D      ++LN +D  G T+L LA
Sbjct:   131 SIKDVNVNGETILHITIMNDKYEQLKVLTGWMQKMRDSDDVFIDVLNRRDRGGNTVLHLA 190

Query:   161 VADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKD 220
               +   + +K L    +++ N    +G TA D+L +++    + +  E+++ +G  +   
Sbjct:   191 AYENNDKVVKQLVKCLSLDRNIQNKSGMTALDVL-RARGSHMNKEIEEIIQMSGGKTGGS 249

Query:   221 LQLPVNELAVTQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKLNAAMVVASVISTMG 280
             L   + E  +     VT  E+ +    +   +     + D      NA +V+A++I +  
Sbjct:   250 LS-GIQEWYIFLREPVTFKEHCKTRIARYRSR-----ISDGSR---NALLVIAALIISAT 300

Query:   281 FQAA--------VDPPQSPELAASSFVVW--NTIGVDARFRFS 313
             FQ A        +D  +   +  S F +W  NT+       FS
Sbjct:   301 FQTAAQLLDKEKLDKVKKNGMRFSEFQLWGCNTVAFSIAILFS 343

GO:0005886 "plasma membrane" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0045087 "innate immune response" evidence=IMP

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 4.1e-14, P = 4.1e-14
 Identities = 68/261 (26%), Positives = 117/261 (44%)

Query:    32 LHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSD 91
             LH+A   GH    + +L  +P++++ +    ++ L  A+ +G+  +V  LL         
Sbjct:   182 LHIACSQGHRSIVQLLLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLAKDSSLLEI 241

Query:    92 TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAA-------STRLIW----VGSTEVLLENM 140
             +  +G+N LHLAA +GH+D++  L+   P  A        T L      V S  V L   
Sbjct:   242 SRSNGKNALHLAARQGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRLLLR 301

Query:   141 GDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRD 200
              D  ++   D +G T+L +A   K+ E +  L       VNA+T +  TA+DI       
Sbjct:   302 ADPAIVMLPDKFGNTVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDIAEGLTHS 361

Query:   201 IKDWDTGELLRRAGAISAKDLQLPVNEL--AVTQTNSVTSHENNQKHEGKKDLKGTPWNL 258
              +  +  E+L R GA+ A +L  P +EL   VT+       +  Q  +  K++ G    L
Sbjct:   362 EETAEIKEILSRCGALKANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNVDGIAKEL 421

Query:   259 DDWLEKKLNAAMVVASVISTM 279
                    +N A    +V++ +
Sbjct:   422 RKLHRAGINNATNSVTVVAVL 442

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 71/266 (26%), Positives = 124/266 (46%)

Query:    33 HVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDT 92
             H+AA  G  D  K +      +A  +D   ++ALH A+ +G+  +V  LL++        
Sbjct:   106 HIAAKQGDLDVLKVLAEAHSELAMTVDLSNTTALHTAATQGHTEVVNFLLELGSSLAGIA 165

Query:    93 DVDGRNPLHLAAMRGHIDVLEELVRAKPDAA-------STRL-IWVGSTEV-LLENM--G 141
               +G+  LH A+  GH+ V++ L+ ++P  A        T L + V  T V ++E +   
Sbjct:   166 KSNGKTALHSASRNGHVKVIKALLASEPAIAIRMDKKGQTALHMAVKGTNVEVVEELIKA 225

Query:   142 DFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDI 201
             D   +N  D  G T L +A    + + +K L  +   +  AV  +G TA D    +   I
Sbjct:   226 DRSSINIADTKGNTALHIAARKGRSQIVKLLLANNMTDTKAVNRSGETALD----TAEKI 281

Query:   202 KDWDTGELLRRAGAISAKDLQL----PVNELAVTQTNSVTSHE-NNQ-KHEG--KKDLKG 253
              + +   +L++ G  SAK ++     P  EL   QT S   HE +NQ +H    +K ++G
Sbjct:   282 GNPEVALILQKHGVPSAKTIKPSGPNPARELK--QTVSDIKHEVHNQLEHTRLTRKRVQG 339

Query:   254 TPWNLDDWLEKKLNAAMVVASVISTM 279
                 L+    + LN A+   +V++ +
Sbjct:   340 IAKQLNKMHTEGLNNAINSTTVVAVL 365

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012557 AT1G14500 "AT1G14500" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 8.7e-13, P = 8.7e-13
 Identities = 85/311 (27%), Positives = 139/311 (44%)

Query:     3 GSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRK 62
             GS+N    L +++P IL+         TPLHVAA   +  FA E+L  KP  A +L++  
Sbjct:    12 GSINDFYALIEENPYILDNINAVPFVNTPLHVAAASDNIPFAMEMLNLKPSFARKLNTSG 71

Query:    63 SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKP-- 120
              S LH+A +K +   +  LL   P        +G  P HL A+RG ++++ E ++  P  
Sbjct:    72 YSPLHLAVEKDHREFITWLLWRDPGLVRVKGREGITPFHLLAIRGDVNLVAECLKYCPVC 131

Query:   121 --DAA-----STRLIWVGST-EVL------LENMG-------DFELLNAKDDYGMTILLL 159
               D +     +  L  +    E+L      L+ M        + + LN KD    T L L
Sbjct:   132 IQDVSVNGHNALHLAVMNDRFEILQVLTGWLQRMSQKDSASTESDFLNRKDLAHNTPLHL 191

Query:   160 AVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQS--KRDIKDWDTGELLRRAGAIS 217
             A   +  +A+K L     +++N V A+G T  DIL  +   RD+ D D  +++ + G   
Sbjct:   192 AAYKEDHQAVKLLLQCQLVKLNEVNADGLTFLDILRNNGQSRDL-DKDLEQVVVKTGCKE 250

Query:   218 AKDLQLPVNELAVTQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKLNAAMVVASVIS 277
             A  L  P  E    Q  S  +   +    G + L+       D  E+     +++ ++I 
Sbjct:   251 AASL--PQLEKPSDQFKSPVTFLAHCSI-GIRRLRS------DTSEEGRAVFLIICTLIL 301

Query:   278 TMGFQAAVDPP 288
             T  +Q A+ PP
Sbjct:   302 TSTYQTALQPP 312

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172099 AT5G54620 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
 Identities = 45/141 (31%), Positives = 71/141 (50%)

Query:     2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSR 61
             +G+V+ L  L  +DP IL+   V     TPLH A+  G  D A E++  KP  A++L+S 
Sbjct:    11 SGNVDALYALIHKDPYILQNIDVLPFVHTPLHEASSTGKTDLAMELMVLKPTFAKKLNSD 70

Query:    62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
               S LH+A +   V +   L+++ PD        G  PLHL   +G  ++L E + A P+
Sbjct:    71 GVSPLHLAVENHQVQLALELVKINPDLVLVAGRKGMTPLHLVVKKGDANLLTEFLLACPE 130

Query:   122 AASTRLIWVGSTEVLLENMGD 142
             +     +  G T + +  M D
Sbjct:   131 SIKDTNV-NGETALHIAVMND 150

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 78/293 (26%), Positives = 132/293 (45%)

Query:    19 LERPTVNCLSE-TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGI 77
             LE   +   S+    HVAA  GH    KE+L   P +    D+  +S L+ A+ + ++ I
Sbjct:    84 LETVKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEI 143

Query:    78 VKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR-------AKPDAASTRLIWV 130
             V A+L V P        +G+  LH A   G + +++ L+         K     T L   
Sbjct:   144 VNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMA 203

Query:   131 --G-STEVLLENM-GDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTAN 186
               G S EV+ E +  D+ +LN +D  G T L +A    + +    L T TAIEVNA+   
Sbjct:   204 VKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQ 263

Query:   187 GFTAWDILAQSKRDIKDWDTGELLRRAGA-----ISAKD----LQLPVNELA-VTQTNSV 236
               TA D+  + +      +  E L  AGA     I  +D    L+  V+++    Q+  +
Sbjct:   264 KETAMDLADKLQYSESALEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLL 323

Query:   237 TSHENNQKHEG-KKDLKGTPWNLDDWLEKKLNAAMVVASVISTMGFQAAVDPP 288
              + + N++  G  K+L+       + ++   N+  VVA + +++ F A  + P
Sbjct:   324 QNEKTNRRVSGIAKELRKLH---REAVQNTTNSITVVAVLFASIAFLAIFNLP 373

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 4.0e-10, P = 4.0e-10
 Identities = 64/246 (26%), Positives = 109/246 (44%)

Query:    31 PLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCS 90
             PLH+AA+ GH    + +L     +++      ++ L  A+ +G+  +V  LL    +   
Sbjct:   167 PLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLE 226

Query:    91 DTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFE-----L 145
              +  + +N LHLAA +GH++V++ L+   P  A  R+   G T + +   G        L
Sbjct:   227 ISRSNNKNALHLAARQGHVEVIKALLSKDPQLAR-RIDKKGQTALHMAVKGQSSEVVKLL 285

Query:   146 LNAKDDYGM-------TILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSK 198
             L+A     M       T L +A   K+ E ++ L +      N +T +  TA DI     
Sbjct:   286 LDADPAIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLP 345

Query:   199 RDIKDWDTGELLRRAGAISAKDLQLPVNELAVTQTNSVTSHENNQKHEGKKDLKGTPWNL 258
                +     E L R+GA+ A +L  P +EL  T T  + +  + Q  + K+  K    N+
Sbjct:   346 LSEESSYIKECLARSGALRANELNQPRDELRSTVTQ-IKNDVHIQLEQTKRTNKNVH-NI 403

Query:   259 DDWLEK 264
                L K
Sbjct:   404 SKELRK 409

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 67/264 (25%), Positives = 121/264 (45%)

Query:    30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
             +PLH AA  G  +  +  L  + ++    D    + LH+A+ +G + +++ ++    D  
Sbjct:    49 SPLHAAAAAGQVETVRATLGVEKKLCRLKDRDGKTPLHVATMRGKIDVIREIVASCVDCL 108

Query:    90 SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA- 148
              D  V G+  LHLA +  H+++ E ++        T    V + +   +  G+  L  A 
Sbjct:   109 EDETVQGQTALHLAVL--HLEI-EAVIAIVELITETNRFDVLNKK---DEQGNTALHLAT 162

Query:   149 --KDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDT 206
               K+   + +L+ A+ ++          S + EVNA+   G +A D+L     +  D + 
Sbjct:   163 WRKNRQVIEVLVQAIPEE----------SRSFEVNAMNKMGLSAMDLLVMFPSEAGDREI 212

Query:   207 GELLRRAGAISAKDLQLPVNELAVTQTNSVTSHENNQKHEGKKDL-KGTPWNLD-DWLEK 264
              E L  AGA   +D+    N    T T+  T  E   K +  K+L K   +    D   +
Sbjct:   213 YEKLIEAGAQRGRDIGT-TNVERTTSTS--TCQERTMKSQSHKELVKYFTFKKHRDSPSE 269

Query:   265 KLNAAMVVASVISTMGFQAAVDPP 288
               +A +VVAS+++T  FQA++ PP
Sbjct:   270 ARSALLVVASLVATATFQASLTPP 293

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	345
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-05
smart00248	30	smart00248, ANK, ankyrin repeats	2e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.001
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 87.4 bits (217), Expect = 3e-21
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 26/149 (17%)

Query: 24  VNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
            +    TPLH+AA  GH +  K +L +        D+   + LH+A++ G++ IVK LL+
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLL-ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 84  VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDF 143
              D  +  D DG  PLHLAA  G++DV++ L++   D                      
Sbjct: 62  KGADVNA-RDKDGNTPLHLAARNGNLDVVKLLLKHGAD---------------------- 98

Query: 144 ELLNAKDDYGMTILLLAVADKQIEAIKFL 172
             +NA+D  G T L LA  +  +E +K L
Sbjct: 99  --VNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 80.1 bits (198), Expect = 1e-18
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 26/141 (18%)

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRA 118
           D    + LH+A+  G++ +VK LL+   D     D DGR PLHLAA  GH+++++ L+  
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 119 KPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAI 178
             D                        +NA+D  G T L LA  +  ++ +K L    A 
Sbjct: 63  GAD------------------------VNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD 98

Query: 179 EVNAVTANGFTAWDILAQSKR 199
            VNA   +G T   + A++  
Sbjct: 99  -VNARDKDGRTPLHLAAKNGH 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 76.1 bits (188), Expect = 1e-17
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 32  LHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSD 91
           LH+AA  G+ +  K +L +   +         +ALH+A++ G + IVK LL+   D    
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEHGADVN-A 56

Query: 92  TDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
            D DG   LHLAA  G++++++ L+    D
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH+AA  GH +  K +L +K       D   ++ LH+A++ G + +VK LL+   D  
Sbjct: 42  TPLHLAAKNGHLEIVKLLL-EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN 100

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELV 116
           +  D DGR PLHLAA  GH++V++ L+
Sbjct: 101 A-RDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 33/110 (30%)

Query: 66  LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRN---PLHLAAMRGHIDVLEELVRAKPDA 122
           LH+A++ G + +VK LL+         DV+  +    LHLAA  G++++++ L+    D 
Sbjct: 1   LHLAAKNGNLELVKLLLE------KGADVNLGDTDTALHLAARNGNLEIVKLLLEHGAD- 53

Query: 123 ASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFL 172
                                  +NAKD  G T L LA  +  +E +K L
Sbjct: 54  -----------------------VNAKDKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
          T LH+AA  G+ +  K +L     +    D   ++ALH+A++ G + IVK LL+   D  
Sbjct: 30 TALHLAARNGNLEIVKLLLEHGADV-NAKDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 64  SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELV 116
           +ALH A+  G + +VK LL+   D  + TD DG   LH+AA  G+++VL+ L+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 24  VNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALL 82
            +    TPLH+AA  G+ D  K +L +        D    + LH+A++ G++ +VK LL
Sbjct: 69  RDKDGNTPLHLAARNGNLDVVKLLL-KHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 46.7 bits (110), Expect = 5e-06
 Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 32/150 (21%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIAS-----QKGYVGIVKALLQV 84
            PLH AA  G +   K +L     +    D+   + LH+A+      +G + + K LL+ 
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGADVNA-KDADGDTPLHLAALNGNPPEGNIEVAKLLLEA 133

Query: 85  IPDKCSDT--DVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGD 142
             D   +   D DG  PLH AA+ G  D++E L+ A  D                     
Sbjct: 134 GADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD--------------------- 172

Query: 143 FELLNAKDDYGMTILLLAVADKQIEAIKFL 172
               N+++ YG+T L  A  + +IE +K L
Sbjct: 173 ---PNSRNSYGVTALDPAAKNGRIELVKLL 199

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 46.9 bits (111), Expect = 7e-06
 Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 16/136 (11%)

Query: 64  SALHIASQKGYVGIVKALLQVIPDKCSDTDV---DGRNPLHLAAMRGHIDVLEELVR--A 118
           S LH A ++G V  V+ LL +   K +D DV   DG  PLHLA +   +D+++ L+   A
Sbjct: 70  SELHDAVEEGDVKAVEELLDL--GKFAD-DVFYKDGMTPLHLATILKKLDIMKLLIARGA 126

Query: 119 KPDAASTRLIWVGSTEVLLENMGDFELL-------NAKDDYGMTILLLAVADKQIEAIKF 171
            PD  +T         V++ ++   ELL       + +D  G T L++A+A   I   K 
Sbjct: 127 DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKM 186

Query: 172 LTTSTAIEVNAVTANG 187
           L  S A  ++    NG
Sbjct: 187 LLDSGA-NIDYFGKNG 201

Length = 413

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 8/99 (8%)

Query: 29  ETPLHVAALLGHE-----DFAKEILPQKPR--IAEELDSRKSSALHIASQKGYVGIVKAL 81
           +TPLH+AAL G+      + AK +L       +    D   ++ LH A+  G   IV+ L
Sbjct: 107 DTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELL 166

Query: 82  LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKP 120
           L+   D  +  +  G   L  AA  G I++++ L+    
Sbjct: 167 LEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLDKGL 204

Length = 235

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 95  DGRNPLHLAAMRGHIDVLEELVRAKPD 121
           DGR PLHLAA  G+++V++ L+    D
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 95  DGRNPLHLAAMRGHIDVLEELVRAKPD 121
           DG  PLHLAA  GH++V++ L+ A  D
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.9 bits (94), Expect = 6e-05
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALL 82
          T LH AA+ G  +  K +L +   I    D   ++ALHIA++ G + ++K LL
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDINR-TDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.5 bits (93), Expect = 7e-05
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 24/77 (31%)

Query: 96  GRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMT 155
           GR  LH AA+ G +++++ L+    D                        +N  D+ G T
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD------------------------INRTDEDGNT 36

Query: 156 ILLLAVADKQIEAIKFL 172
            L +A  +  +E +K L
Sbjct: 37  ALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 28/160 (17%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH+AA  G+ED    +L     +    D+  ++AL  A    +  I + L        
Sbjct: 560 TPLHIAASKGYEDCVLVLLKHACNVHIR-DANGNTALWNAISAKHHKIFRILYHFA--SI 616

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAK 149
           SD    G + L  AA R  +  ++EL++   +                        ++++
Sbjct: 617 SDPHAAG-DLLCTAAKRNDLTAMKELLKQGLN------------------------VDSE 651

Query: 150 DDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFT 189
           D  G T L +A+A+  ++ ++ L  + A    A T + F+
Sbjct: 652 DHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFS 691

Length = 823

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 42/152 (27%), Positives = 60/152 (39%), Gaps = 22/152 (14%)

Query: 46  EILPQKPRIAEELDSRKSSALHIASQK--GYVGIVKALLQVIPDKCSDTDV---DGRNPL 100
           ++L +        D+   + L  A  K      IV+ LL    D  ++ ++   DG N L
Sbjct: 90  KLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLL----DNGANVNIKNSDGENLL 145

Query: 101 HLAAMRGHID--VLEELVRAKPDA-ASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTIL 157
           HL      ID  +L+ L+    D  A  R+        LL        +N KD YG T L
Sbjct: 146 HLYLESNKIDLKILKLLIDKGVDINAKNRV------NYLLSYGVP---INIKDVYGFTPL 196

Query: 158 LLAVADKQIEAIKFLTTSTAIEVNAVTANGFT 189
             AV +   E +K+L    A   N V   G T
Sbjct: 197 HYAVYNNNPEFVKYLLDLGA-NPNLVNKYGDT 227

Length = 422

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 95  DGRNPLHLAAMRGHIDVLEELVRAKPD 121
           DG  PLHLAA  G++++++ L+    D
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 81  LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDA 122
           LL+  P   + TD +G  PLHLAA  G +++++ L++   D 
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL 42

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR 117
           D    + LHIA   G+V +V+ LL+   D  +  D DG+ PL LA   G  +V++ L R
Sbjct: 112 DYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLA 103
           D   ++ LH+A++ G + +V+ LL+   D  +  D DG   L LA
Sbjct: 13  DGNGNTPLHLAAKYGALELVQWLLKPGVD-LNLRDSDGLTALDLA 56

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	345
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	99.98
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PHA02876	682	ankyrin repeat protein; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
PHA02917	661	ankyrin-like protein; Provisional	99.94
KOG0510	929	consensus Ankyrin repeat protein [General function	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
PHA02730	672	ankyrin-like protein; Provisional	99.93
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
PHA02792	631	ankyrin-like protein; Provisional	99.93
PHA02798	489	ankyrin-like protein; Provisional	99.92
KOG0514	452	consensus Ankyrin repeat protein [General function	99.92
PHA02730	672	ankyrin-like protein; Provisional	99.91
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.91
PHA02795	437	ankyrin-like protein; Provisional	99.91
PHA02741	169	hypothetical protein; Provisional	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.9
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.89
PHA02736	154	Viral ankyrin protein; Provisional	99.89
PHA02792	631	ankyrin-like protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.88
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.86
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.86
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
KOG0514	452	consensus Ankyrin repeat protein [General function	99.8
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.79
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.78
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.76
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.72
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.67
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.66
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.65
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.63
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.62
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.53
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.53
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.5
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.49
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.49
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.48
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.48
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.45
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.43
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.41
PF13962	113	PGG: Domain of unknown function	99.29
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.99
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.95
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.92
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.91
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.89
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.88
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.87
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.84
PF13606	30	Ank_3: Ankyrin repeat	98.79
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.76
PF13606	30	Ank_3: Ankyrin repeat	98.68
KOG0522	560	consensus Ankyrin repeat protein [General function	98.64
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.64
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.62
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.62
KOG0522	560	consensus Ankyrin repeat protein [General function	98.52
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.41
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.36
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.33
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.22
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.19
KOG0511	516	consensus Ankyrin repeat protein [General function	98.13
KOG2384	223	consensus Major histocompatibility complex protein	97.97
KOG2384	223	consensus Major histocompatibility complex protein	97.97
KOG0511	516	consensus Ankyrin repeat protein [General function	97.95
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.87
KOG2505	591	consensus Ankyrin repeat protein [General function	96.94
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.83
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.82
KOG2505	591	consensus Ankyrin repeat protein [General function	96.55
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.92
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.3
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	91.64
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.99
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.86
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	86.07

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-37  Score=241.99  Aligned_cols=184  Identities=29%  Similarity=0.334  Sum_probs=164.9

Q ss_pred             HHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhh
Q 043760            5 VNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV   84 (345)
Q Consensus         5 ~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~   84 (345)
                      ...++++++..|.-+... .|.+|+||||+||..|+.+++++|++...-.++.+|..||||||+||..|+.++|+.|+.+
T Consensus        16 ~~kveel~~s~~kSL~~r-~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r   94 (226)
T KOG4412|consen   16 EFKVEELIQSDPKSLNAR-DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNR   94 (226)
T ss_pred             HHHHHHHHhcChhhhhcc-ccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcC
Confidence            457888999888433321 1458999999999999999999999754444488899999999999999999999999999


Q ss_pred             -CCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHc
Q 043760           85 -IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVAD  163 (345)
Q Consensus        85 -~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~  163 (345)
                       |+++ +..++.|+|+||+|+..|+.+|+++|++.|+.                        ++.+|..|.||||-|+..
T Consensus        95 ~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga~------------------------i~~kD~~~qtplHRAAav  149 (226)
T KOG4412|consen   95 SGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL------------------------IRIKDKQGQTPLHRAAAV  149 (226)
T ss_pred             CCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCCC------------------------CcccccccCchhHHHHhc
Confidence             9999 89999999999999999999999999999988                        899999999999999999


Q ss_pred             CCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          164 KQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       164 g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      |..+++++|+.. |+.+|.+|..|+||||.|.-    .++.+...+|+++||+...
T Consensus       150 Gklkvie~Li~~-~a~~n~qDk~G~TpL~~al~----e~~~d~a~lLV~~gAd~~~  200 (226)
T KOG4412|consen  150 GKLKVIEYLISQ-GAPLNTQDKYGFTPLHHALA----EGHPDVAVLLVRAGADTDR  200 (226)
T ss_pred             cchhhHHHHHhc-CCCCCcccccCccHHHHHHh----ccCchHHHHHHHhccceee
Confidence            999999999999 89999999999999999955    4578899999999998754

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.9e-34  Score=220.76  Aligned_cols=163  Identities=29%  Similarity=0.384  Sum_probs=151.4

Q ss_pred             CCHHHHHHHHhc-CCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcC-CCCcccccCCCCchHHHHHHHcCCHHHHHH
Q 043760            3 GSVNTLLELRQQ-DPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQ-KPRIAEELDSRKSSALHIASQKGYVGIVKA   80 (345)
Q Consensus         3 g~~~~v~~ll~~-~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~   80 (345)
                      |..++|..|++. +-.+   ++.|..|+||||+||..|+.++|+.|+.+ ++++ +..+..|+||||||+.+|..+|+++
T Consensus        49 g~~eiv~fLlsq~nv~~---ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaql  124 (226)
T KOG4412|consen   49 GHVEIVYFLLSQPNVKP---DDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQL  124 (226)
T ss_pred             CchhHHHHHHhcCCCCC---CCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHH
Confidence            788999999963 3333   33489999999999999999999999999 8888 9999999999999999999999999


Q ss_pred             HHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHH
Q 043760           81 LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLA  160 (345)
Q Consensus        81 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A  160 (345)
                      |+++|+.+ +.+|..|.||||.|+.-|..+++++|+..++.                        +|.+|..|+||||.|
T Consensus       125 Lle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li~~~a~------------------------~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  125 LLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP------------------------LNTQDKYGFTPLHHA  179 (226)
T ss_pred             HHhcCCCC-cccccccCchhHHHHhccchhhHHHHHhcCCC------------------------CCcccccCccHHHHH
Confidence            99999998 89999999999999999999999999999987                        999999999999999


Q ss_pred             HHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHh
Q 043760          161 VADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ  196 (345)
Q Consensus       161 ~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~  196 (345)
                      ...|+.++..+|++. |++++..|++| ||+..++.
T Consensus       180 l~e~~~d~a~lLV~~-gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  180 LAEGHPDVAVLLVRA-GADTDREDKEG-TALRIACN  213 (226)
T ss_pred             HhccCchHHHHHHHh-ccceeeccccC-chHHHHHH
Confidence            888999999999999 89999999999 99988876

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.7e-33  Score=243.06  Aligned_cols=200  Identities=16%  Similarity=0.083  Sum_probs=170.1

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .++.++++.|++.++.     ..|..|+||||+|+..|+.++++.|++.++++ +..  +|.||||+|+..|+.+++++|
T Consensus         9 ~~~~~~~~~Lis~~a~-----~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~-n~~--d~~TpLh~Aa~~g~~eiV~lL   80 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF-----KADVHGHSALYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKIL   80 (284)
T ss_pred             cCHHHHHHHHHhCCCC-----CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC-cCC--CCCCHHHHHHHCCCHHHHHHH
Confidence            4678899999998864     23888999999999999999999999999876 544  478999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc-------------HHHHHHhcCCcccccc
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS-------------TEVLLENMGDFELLNA  148 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~  148 (345)
                      ++.|+++ +..|..|+||||+|+..|+.+++++|++.+++........+.+             +++|++.+..     .
T Consensus        81 L~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~-----~  154 (284)
T PHA02791         81 LFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-----T  154 (284)
T ss_pred             HHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc-----c
Confidence            9999998 7899999999999999999999999999998864432221122             5666665322     2


Q ss_pred             cC-CCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcH-HHHHHhcCCCCchhhHHHHHHHcccccccc
Q 043760          149 KD-DYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA-WDILAQSKRDIKDWDTGELLRRAGAISAKD  220 (345)
Q Consensus       149 ~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~-L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  220 (345)
                      .| ..|.||||+|+..|+.+++++||++ |++++.+|..|.|| ||+|+.    .++.+++++|+++||+++..
T Consensus       155 ~d~~~g~TpLh~Aa~~g~~eiv~lLL~~-gAd~n~~d~~g~t~~L~~Aa~----~~~~e~v~lLl~~Ga~in~~  223 (284)
T PHA02791        155 FDLAILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAID----NKDLEMLQALFKYDINIYSV  223 (284)
T ss_pred             cccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCcccCCCCChHHHHHHH----cCCHHHHHHHHHCCCCCccC
Confidence            23 3589999999999999999999999 89999999999987 999999    89999999999999998653

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=5.7e-33  Score=254.58  Aligned_cols=199  Identities=24%  Similarity=0.249  Sum_probs=179.2

Q ss_pred             CCCHHHHHHHHhc-CCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccC-CCCchHHHHHHHcCCHHHHH
Q 043760            2 AGSVNTLLELRQQ-DPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELD-SRKSSALHIASQKGYVGIVK   79 (345)
Q Consensus         2 ~g~~~~v~~ll~~-~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~~iv~   79 (345)
                      .|+++.|+.+++. +-.+.+   .|.+|.|+||+||.+++++++++|+++++++ |..+ .-+.||||+|+++|+..+|.
T Consensus        54 ~G~l~~v~~lve~~g~~v~~---~D~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~G~~~vv~  129 (600)
T KOG0509|consen   54 YGELETVKELVESEGESVNN---PDREGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARNGHISVVD  129 (600)
T ss_pred             cchHHHHHHHHhhcCcCCCC---CCcCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHcCcHHHHH
Confidence            6899999999998 555443   3789999999999999999999999999999 7666 77899999999999999999


Q ss_pred             HHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHH
Q 043760           80 ALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLL  159 (345)
Q Consensus        80 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~  159 (345)
                      +|+++|+|+ ..+|.+|.+|||+|++.|+.-+|-+|+.++.+                        ++.+|..|+||||+
T Consensus       130 lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~~d------------------------~d~~D~~grTpLmw  184 (600)
T KOG0509|consen  130 LLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD------------------------IDLRDNNGRTPLMW  184 (600)
T ss_pred             HHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhccc------------------------CCCcCCCCCCHHHH
Confidence            999999999 89999999999999999999999999999988                        89999999999999


Q ss_pred             HHHcCCHHHHHHhhhcCCccccccC-CCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccchhhhcccc
Q 043760          160 AVADKQIEAIKFLTTSTAIEVNAVT-ANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELAVTQTN  234 (345)
Q Consensus       160 A~~~g~~~~v~~Ll~~~~~~~~~~n-~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~  234 (345)
                      |+.+|+...++.||+. ++.++.+| ++|+||||+|+.    .++..++++|++.|++..+...+...+..+.+..
T Consensus       185 Aaykg~~~~v~~LL~f-~a~~~~~d~~~g~TpLHwa~~----~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  185 AAYKGFALFVRRLLKF-GASLLLTDDNHGNTPLHWAVV----GGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHhcccHHHHHHHHh-cccccccccccCCchHHHHHh----cCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999998889999999 88999988 899999999999    8889988888888888877666666665555443

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-31  Score=251.05  Aligned_cols=205  Identities=22%  Similarity=0.185  Sum_probs=174.0

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++++.|++.|.++...   +..|.||||+|+..|+.+++++|++.|+++ +..+..+.||||+|+..|+.+++++|
T Consensus        12 ~g~~~iv~~Ll~~g~~~n~~---~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g~~~~v~~L   87 (413)
T PHA02875         12 FGELDIARRLLDIGINPNFE---IYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGDVKAVEEL   87 (413)
T ss_pred             hCCHHHHHHHHHCCCCCCcc---CCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCCCHHHHHHH
Confidence            58999999999999876543   778999999999999999999999999987 77788999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc-------------HHHHHHhcCCcccccc
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS-------------TEVLLENMGDFELLNA  148 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~  148 (345)
                      ++.|+......+..|.||||+|+..|+.+++++|++.|+++... +..+.+             ++.|++.+.+   ++.
T Consensus        88 l~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~-~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~---~~~  163 (413)
T PHA02875         88 LDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP-NTDKFSPLHLAVMMGDIKGIELLIDHKAC---LDI  163 (413)
T ss_pred             HHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcCCC---CCC
Confidence            99998876677888999999999999999999999999986443 222333             6666666655   777


Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCC-cHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          149 KDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGF-TAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       149 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~-T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      +|..|.||||+|+..|+.+++++|++. |++++..+..|. ||+|+|+.    .++.+++++|++.|++.+.
T Consensus       164 ~d~~g~TpL~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~~~t~l~~A~~----~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        164 EDCCGCTPLIIAMAKGDIAICKMLLDS-GANIDYFGKNGCVAALCYAIE----NNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCchHHHHHHH----cCCHHHHHHHHHCCcCcch
Confidence            888888888888888888888888888 888888887775 77888888    7778888888888888754

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.98  E-value=3.2e-31  Score=253.35  Aligned_cols=204  Identities=23%  Similarity=0.215  Sum_probs=174.3

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHH--HcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcC--CHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAA--LLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKG--YVGI   77 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa--~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~i   77 (345)
                      .|+.++++.|++.|+++..   .+..|.||||+|+  ..|+.+++++|++.|+++ +..+..|.||||+|+..|  +.++
T Consensus        83 ~~~~~iv~~Ll~~ga~i~~---~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~i  158 (480)
T PHA03100         83 TDVKEIVKLLLEYGANVNA---PDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKI  158 (480)
T ss_pred             hchHHHHHHHHHCCCCCCC---CCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHH
Confidence            4788899999999888633   3888999999999  899999999999999887 888999999999999999  8999


Q ss_pred             HHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccC--------------------CccHHHHH
Q 043760           78 VKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIW--------------------VGSTEVLL  137 (345)
Q Consensus        78 v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~--------------------~~~~~~l~  137 (345)
                      +++|+++|+++ +..+..|.||||+|+..|+.+++++|++.|++........                    ...++.|+
T Consensus       159 v~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll  237 (480)
T PHA03100        159 LKLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLL  237 (480)
T ss_pred             HHHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHH
Confidence            99999999998 7788899999999999999999999999988765432211                    11266677


Q ss_pred             HhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccc
Q 043760          138 ENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAIS  217 (345)
Q Consensus       138 ~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~  217 (345)
                      +.+.+   ++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||+|+|+.    .++.+++++|++.|++.
T Consensus       238 ~~g~d---in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~-gad~n~~d~~g~tpl~~A~~----~~~~~iv~~Ll~~g~~i  309 (480)
T PHA03100        238 SYGVP---INIKDVYGFTPLHYAVYNNNPEFVKYLLDL-GANPNLVNKYGDTPLHIAIL----NNNKEIFKLLLNNGPSI  309 (480)
T ss_pred             HcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCcHHHHHHH----hCCHHHHHHHHhcCCCH
Confidence            76665   888999999999999999999999999998 88999999999999999998    78889999999999976


Q ss_pred             c
Q 043760          218 A  218 (345)
Q Consensus       218 ~  218 (345)
                      .
T Consensus       310 ~  310 (480)
T PHA03100        310 K  310 (480)
T ss_pred             H
Confidence            4

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1e-30  Score=249.78  Aligned_cols=206  Identities=15%  Similarity=0.098  Sum_probs=170.5

Q ss_pred             CCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHc-----CCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcC---C
Q 043760            3 GSVNTLLELRQQDPLILERPTVNCLSETPLHVAALL-----GHEDFAKEILPQKPRIAEELDSRKSSALHIASQKG---Y   74 (345)
Q Consensus         3 g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g---~   74 (345)
                      ++.++|+.|++.|+++...   +..|.||||.|+.+     ++.+++++|++.|+++ +.+|..|.||||+|+..+   +
T Consensus        49 ~~~~iv~~Ll~~Gadvn~~---d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~  124 (489)
T PHA02798         49 PSTDIVKLFINLGANVNGL---DNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNSDGETPLYCLLSNGYINN  124 (489)
T ss_pred             CCHHHHHHHHHCCCCCCCC---CCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcCh
Confidence            5788999999999886554   78899999988764     6789999999999997 888999999999999875   6


Q ss_pred             HHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCc---HHHHHHHHhcCCCcccccccCCcc-----------------HH
Q 043760           75 VGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGH---IDVLEELVRAKPDAASTRLIWVGS-----------------TE  134 (345)
Q Consensus        75 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~iv~~Ll~~~~~~~~~~~~~~~~-----------------~~  134 (345)
                      .+++++|+++|+++ +..|..|.||||+|+..|+   .+++++|++.|++.....+..+.+                 ++
T Consensus       125 ~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk  203 (489)
T PHA02798        125 LEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILK  203 (489)
T ss_pred             HHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHH
Confidence            88999999999998 7889999999999999887   899999999888765433222111                 33


Q ss_pred             HHHHhcCC------------------------------------cccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCc
Q 043760          135 VLLENMGD------------------------------------FELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAI  178 (345)
Q Consensus       135 ~l~~~~~~------------------------------------~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  178 (345)
                      .|++.+..                                    ...+|.+|..|+||||+|+..|+.+++++|++. |+
T Consensus       204 ~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~-GA  282 (489)
T PHA02798        204 LFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQL-GG  282 (489)
T ss_pred             HHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHc-CC
Confidence            33333211                                    113678899999999999999999999999999 99


Q ss_pred             cccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccc
Q 043760          179 EVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISA  218 (345)
Q Consensus       179 ~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~  218 (345)
                      |++.+|..|+||||+|+.    .++.++++.|++.|++..
T Consensus       283 din~~d~~G~TpL~~A~~----~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        283 DINIITELGNTCLFTAFE----NESKFIFNSILNKKPNKN  318 (489)
T ss_pred             cccccCCCCCcHHHHHHH----cCcHHHHHHHHccCCCHH
Confidence            999999999999999999    888999999999998775

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=1.9e-30  Score=243.56  Aligned_cols=201  Identities=15%  Similarity=0.126  Sum_probs=172.0

Q ss_pred             CCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCC--HHHHHH
Q 043760            3 GSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGY--VGIVKA   80 (345)
Q Consensus         3 g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~--~~iv~~   80 (345)
                      ++.++|+.|++.|+++..+   |..|+||||+||..|+.+++++|+++|+++ +.+|..|.||||+|+..++  .+++++
T Consensus        50 ~~~~iv~~Ll~~Gadvn~~---d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~~~~~~~~e~v~l  125 (446)
T PHA02946         50 LDERFVEELLHRGYSPNET---DDDGNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLSGTDDEVIERINL  125 (446)
T ss_pred             CCHHHHHHHHHCcCCCCcc---CCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCchHHHHHH
Confidence            4678999999999987654   899999999999999999999999999998 8999999999999988764  899999


Q ss_pred             HHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc---------------HHHHHHhcCCccc
Q 043760           81 LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS---------------TEVLLENMGDFEL  145 (345)
Q Consensus        81 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~  145 (345)
                      |+++|+++....|..|.|||| |+..|+.+++++|++.|++.... +..|.+               ++.|++.+.+   
T Consensus       126 Ll~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~-d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad---  200 (446)
T PHA02946        126 LVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIV-DKFGKNHIHRHLMSDNPKASTISWMMKLGIS---  200 (446)
T ss_pred             HHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccccccc-CCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC---
Confidence            999999995567999999998 66679999999999998876433 222222               5667777766   


Q ss_pred             ccccCCCCCCHHHHHHHcC--CHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCch-hhHHHHHHHcccccc
Q 043760          146 LNAKDDYGMTILLLAVADK--QIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKD-WDTGELLRRAGAISA  218 (345)
Q Consensus       146 ~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~-~~i~~~L~~~ga~~~  218 (345)
                      ++.+|.+|+||||+|+..+  +.+++++|+.  ++++|.+|..|+||||+|+.    .++ .+++++|++.|+...
T Consensus       201 in~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A~~----~~~~~~~~~~Ll~~g~~~~  270 (446)
T PHA02946        201 PSKPDHDGNTPLHIVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLLIK----TLSPAHLINKLLSTSNVIT  270 (446)
T ss_pred             CcccCCCCCCHHHHHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHHHH----hCChHHHHHHHHhCCCCCC
Confidence            8999999999999999986  7899999884  78999999999999999998    444 588999999987653

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.6e-30  Score=243.72  Aligned_cols=202  Identities=18%  Similarity=0.191  Sum_probs=151.6

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++++.|++.|......   +..+.||||+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|
T Consensus        45 ~~~~~~v~~Ll~~ga~~~~~---~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~L  121 (413)
T PHA02875         45 FRDSEAIKLLMKHGAIPDVK---YPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLL  121 (413)
T ss_pred             cCCHHHHHHHHhCCCCcccc---CCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHH
Confidence            46778888888887654332   566778888888888888888888877766555666778888888888888888888


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc-------------HHHHHHhcCCcccccc
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS-------------TEVLLENMGDFELLNA  148 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~  148 (345)
                      +++|+++ +..+..|.||||+|+..|+.+++++|++.+++.... +..|.+             ++.|++.+.+   ++.
T Consensus       122 l~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~---~n~  196 (413)
T PHA02875        122 IARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIE-DCCGCTPLIIAMAKGDIAICKMLLDSGAN---IDY  196 (413)
T ss_pred             HhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCc
Confidence            8888877 677777888888888888888888888877764332 333333             5666666666   788


Q ss_pred             cCCCC-CCHHHHHHHcCCHHHHHHhhhcCCcccccc---CCCCCcHHHHHHhcCCCCchhhHHHHHHHc
Q 043760          149 KDDYG-MTILLLAVADKQIEAIKFLTTSTAIEVNAV---TANGFTAWDILAQSKRDIKDWDTGELLRRA  213 (345)
Q Consensus       149 ~d~~g-~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~---n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~  213 (345)
                      .+..| .||+|+|+..|+.+++++|+++ |+|++..   +.++.||+++++.... ....+.++.++..
T Consensus       197 ~~~~~~~t~l~~A~~~~~~~iv~~Ll~~-gad~n~~~~~~~~~~t~l~~~~~~~~-~~~~~~~~~li~~  263 (413)
T PHA02875        197 FGKNGCVAALCYAIENNKIDIVRLFIKR-GADCNIMFMIEGEECTILDMICNMCT-NLESEAIDALIAD  263 (413)
T ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHHC-CcCcchHhhcCCCchHHHHHHHhhcC-CcccHHHHHHHHH
Confidence            88777 5899999999999999999999 9998875   6789999999876322 3455677777743

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.7e-30  Score=243.56  Aligned_cols=186  Identities=20%  Similarity=0.247  Sum_probs=149.9

Q ss_pred             CCCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHH
Q 043760            1 MAGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKA   80 (345)
Q Consensus         1 ~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~   80 (345)
                      .+|+++.|+.|++.++...+.  .+..|.||||.|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++
T Consensus        10 ~~gd~~~v~~ll~~~~~~~n~--~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~-n~~~~~~~t~L~~A~~~~~~~iv~~   86 (434)
T PHA02874         10 YSGDIEAIEKIIKNKGNCINI--SVDETTTPLIDAIRSGDAKIVELFIKHGADI-NHINTKIPHPLLTAIKIGAHDIIKL   86 (434)
T ss_pred             hcCCHHHHHHHHHcCCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            379999999999987664443  3778999999999999999999999999998 8889999999999999999999999


Q ss_pred             HHhhCCCC----------------------CcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHH
Q 043760           81 LLQVIPDK----------------------CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLE  138 (345)
Q Consensus        81 Ll~~~~~~----------------------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~  138 (345)
                      |+++|++.                      .+..+..|.||||+|+..|+.+++++|++.|++                 
T Consensus        87 Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad-----------------  149 (434)
T PHA02874         87 LIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-----------------  149 (434)
T ss_pred             HHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC-----------------
Confidence            99887643                      146788999999999999999999999999998                 


Q ss_pred             hcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccc
Q 043760          139 NMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISA  218 (345)
Q Consensus       139 ~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~  218 (345)
                             ++.+|..|.||||+|+..|+.+++++|++. |++++..|..|.||||+|+.    .++.+++++|++.|++..
T Consensus       150 -------~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~-g~~~n~~~~~g~tpL~~A~~----~g~~~iv~~Ll~~g~~i~  217 (434)
T PHA02874        150 -------VNIEDDNGCYPIHIAIKHNFFDIIKLLLEK-GAYANVKDNNGESPLHNAAE----YGDYACIKLLIDHGNHIM  217 (434)
T ss_pred             -------CCCcCCCCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhCCCCCc
Confidence                   566666666666666666666666666666 66666666666666666666    566666666666666543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.5e-30  Score=245.69  Aligned_cols=213  Identities=20%  Similarity=0.150  Sum_probs=140.2

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcC---CHHHHHHHhcCCCCcccccCCCCchHHHHHHHcC-CHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLG---HEDFAKEILPQKPRIAEELDSRKSSALHIASQKG-YVGI   77 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g-~~~i   77 (345)
                      ++++++|+.|++.|.++...   +..|.||||+|+..|   +.+++++|++.|+++ +.+|..|.||||+|+..| +.++
T Consensus        24 ~~~~~~v~~Ll~~ga~vn~~---~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~~~~~i   99 (471)
T PHA03095         24 NVTVEEVRRLLAAGADVNFR---GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGFTPLHLYLYNATTLDV   99 (471)
T ss_pred             CCCHHHHHHHHHcCCCcccC---CCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCcHHH
Confidence            35566666666666664433   556666666666666   666666666666665 666666666666666666 3666


Q ss_pred             HHHHHhhCCCCCcCCCCCCCcHHHHHH--HcCcHHHHHHHHhcCCCccccc-----------------------------
Q 043760           78 VKALLQVIPDKCSDTDVDGRNPLHLAA--MRGHIDVLEELVRAKPDAASTR-----------------------------  126 (345)
Q Consensus        78 v~~Ll~~~~~~~~~~d~~g~tpLh~A~--~~g~~~iv~~Ll~~~~~~~~~~-----------------------------  126 (345)
                      +++|+++|+++ +..|..|.||||+|+  ..++.+++++|++.|+++....                             
T Consensus       100 v~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~  178 (471)
T PHA03095        100 IKLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGA  178 (471)
T ss_pred             HHHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCC
Confidence            66666666666 566666666666666  3345566666666655543211                             


Q ss_pred             -----ccCCcc---------------HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCH--HHHHHhhhcCCccccccC
Q 043760          127 -----LIWVGS---------------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQI--EAIKFLTTSTAIEVNAVT  184 (345)
Q Consensus       127 -----~~~~~~---------------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~--~~v~~Ll~~~~~~~~~~n  184 (345)
                           +..+.+               ++.|++.+.+   ++.+|..|+||||+|+..|+.  .+++.|++. |+++|.+|
T Consensus       179 ~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~---~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~-g~din~~d  254 (471)
T PHA03095        179 DVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCD---PAATDMLGNTPLHSMATGSSCKRSLVLPLLIA-GISINARN  254 (471)
T ss_pred             CCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcCCchHHHHHHHHHc-CCCCCCcC
Confidence                 111111               4444444444   677788888888888888764  577778877 88999999


Q ss_pred             CCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccch
Q 043760          185 ANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNE  227 (345)
Q Consensus       185 ~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~  227 (345)
                      ..|+||||+|+.    .++.+++++|++.||+++.......++
T Consensus       255 ~~g~TpLh~A~~----~~~~~~v~~LL~~gad~n~~~~~g~tp  293 (471)
T PHA03095        255 RYGQTPLHYAAV----FNNPRACRRLIALGADINAVSSDGNTP  293 (471)
T ss_pred             CCCCCHHHHHHH----cCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence            999999999988    778889999999999886544444344

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6e-30  Score=243.93  Aligned_cols=190  Identities=22%  Similarity=0.219  Sum_probs=141.5

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHH---------------------------------------
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHED---------------------------------------   42 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~---------------------------------------   42 (345)
                      .|+.++|+.|++.|+++...   +..|+||||+||..|+.+                                       
T Consensus        47 ~g~~e~vk~Ll~~gadvn~~---d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~  123 (477)
T PHA02878         47 ARNLDVVKSLLTRGHNVNQP---DHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTN  123 (477)
T ss_pred             cCCHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhC
Confidence            57888888888888775543   778888888888776554                                       


Q ss_pred             -------------------------HHHHHhcCCCCcccccCCC-CchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCC
Q 043760           43 -------------------------FAKEILPQKPRIAEELDSR-KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDG   96 (345)
Q Consensus        43 -------------------------~v~~Ll~~~~~~~~~~d~~-g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g   96 (345)
                                               ++++|++.|+++ +.++.. |.||||+|+..|+.+++++|+++|+++ +..|..|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g  201 (477)
T PHA02878        124 RYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTN  201 (477)
T ss_pred             cccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCC
Confidence                                     344444445554 555666 777777777777777777777777777 6677777


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHc-CCHHHHHHhhhc
Q 043760           97 RNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVAD-KQIEAIKFLTTS  175 (345)
Q Consensus        97 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~-g~~~~v~~Ll~~  175 (345)
                      .||||+|+..|+.+++++|++.|++                        ++.+|..|+||||+|+.. ++.+++++|+++
T Consensus       202 ~tpLh~A~~~~~~~iv~~Ll~~ga~------------------------in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~  257 (477)
T PHA02878        202 NSPLHHAVKHYNKPIVHILLENGAS------------------------TDARDKCGNTPLHISVGYCKDYDILKLLLEH  257 (477)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCC------------------------CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHc
Confidence            7777777777777777777777776                        788888888888888865 688888888888


Q ss_pred             CCccccccCC-CCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccch
Q 043760          176 TAIEVNAVTA-NGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNE  227 (345)
Q Consensus       176 ~~~~~~~~n~-~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~  227 (345)
                       |++++.++. .|.||||+|..      +.+++++|++.||+++.....+.++
T Consensus       258 -gadvn~~~~~~g~TpLh~A~~------~~~~v~~Ll~~gadin~~d~~g~Tp  303 (477)
T PHA02878        258 -GVDVNAKSYILGLTALHSSIK------SERKLKLLLEYGADINSLNSYKLTP  303 (477)
T ss_pred             -CCCCCccCCCCCCCHHHHHcc------CHHHHHHHHHCCCCCCCcCCCCCCH
Confidence             888888876 78888888843      3577888888888876543333333

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.1e-29  Score=239.48  Aligned_cols=214  Identities=21%  Similarity=0.191  Sum_probs=172.2

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCc----------------------ccccC
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRI----------------------AEELD   59 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~----------------------~~~~d   59 (345)
                      .|+.++|+.|++.|+++...   +..|.||||+|+..|+.+++++|++.|.+.                      ++.+|
T Consensus        45 ~g~~~iv~~Ll~~Ga~~n~~---~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~  121 (434)
T PHA02874         45 SGDAKIVELFIKHGADINHI---NTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKD  121 (434)
T ss_pred             cCCHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCC
Confidence            68999999999999886543   888999999999999999999999877542                      25678


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc-------
Q 043760           60 SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS-------  132 (345)
Q Consensus        60 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-------  132 (345)
                      ..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.|++.... +..+.+       
T Consensus       122 ~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~-~~~g~tpL~~A~~  199 (434)
T PHA02874        122 AELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK-DNNGESPLHNAAE  199 (434)
T ss_pred             CCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHH
Confidence            89999999999999999999999999999 788999999999999999999999999999875433 233333       


Q ss_pred             ------HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhH
Q 043760          133 ------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDT  206 (345)
Q Consensus       133 ------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i  206 (345)
                            +++|++.+.+   ++.++..|.||||+|+..+. +++++|+ . +++++.+|..|+||||+|+..   ..+.++
T Consensus       200 ~g~~~iv~~Ll~~g~~---i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~-~~~in~~d~~G~TpLh~A~~~---~~~~~i  270 (434)
T PHA02874        200 YGDYACIKLLIDHGNH---IMNKCKNGFTPLHNAIIHNR-SAIELLI-N-NASINDQDIDGSTPLHHAINP---PCDIDI  270 (434)
T ss_pred             cCCHHHHHHHHhCCCC---CcCCCCCCCCHHHHHHHCCh-HHHHHHH-c-CCCCCCcCCCCCCHHHHHHhc---CCcHHH
Confidence                  6777776665   67777888888888888754 4556665 3 678888888999999998872   235789


Q ss_pred             HHHHHHcccccccccCCccchhh
Q 043760          207 GELLRRAGAISAKDLQLPVNELA  229 (345)
Q Consensus       207 ~~~L~~~ga~~~~~~~~~~~~~~  229 (345)
                      +++|++.|++.+.......+++.
T Consensus       271 v~~Ll~~gad~n~~d~~g~TpL~  293 (434)
T PHA02874        271 IDILLYHKADISIKDNKGENPID  293 (434)
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHH
Confidence            99999999988654444444443

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=9.2e-30  Score=223.58  Aligned_cols=194  Identities=19%  Similarity=0.185  Sum_probs=166.3

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++++.|++.++++..     .+|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|
T Consensus        40 ~g~~eiv~~Ll~~ga~~n~-----~d~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~L  113 (284)
T PHA02791         40 DNNVRLVCTLLNAGALKNL-----LENEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLF  113 (284)
T ss_pred             cCCHHHHHHHHHCcCCCcC-----CCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            6899999999999876433     24789999999999999999999999988 88999999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCC-CcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc-------------HHHHHHhcCCccccc
Q 043760           82 LQVIPDKCSDTDVDG-RNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS-------------TEVLLENMGDFELLN  147 (345)
Q Consensus        82 l~~~~~~~~~~d~~g-~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~  147 (345)
                      +++|+++ +..+..| .||||+|+..|+.+++++|++.+++....  ..+.+             ++.|++.+.+   ++
T Consensus       114 l~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~--~~g~TpLh~Aa~~g~~eiv~lLL~~gAd---~n  187 (284)
T PHA02791        114 VKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AILLSCIHITIKNGHVDMMILLLDYMTS---TN  187 (284)
T ss_pred             HHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccccc--ccCccHHHHHHHcCCHHHHHHHHHCCCC---CC
Confidence            9999998 6777777 48999999999999999999987653211  11223             7888888877   88


Q ss_pred             ccCCCCCCH-HHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          148 AKDDYGMTI-LLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       148 ~~d~~g~t~-Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      .+|..|.|| ||+|+..|+.+++++|+++ |+++|.+|.+| |+|          +..|++++|+++.++...
T Consensus       188 ~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~-Ga~in~~~~~~-~~l----------~~~e~~~~ll~~~~~~~~  248 (284)
T PHA02791        188 TNNSLLFIPDIKLAIDNKDLEMLQALFKY-DINIYSVNLEN-VLL----------DDAEIAKMIIEKHVEYKS  248 (284)
T ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCccCcccC-ccC----------CCHHHHHHHHHhhhhhcc
Confidence            999999987 9999999999999999999 99999999965 554          567899999999887644

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.1e-29  Score=239.70  Aligned_cols=213  Identities=22%  Similarity=0.216  Sum_probs=188.9

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHH-----HHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHH--HcCC
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHV-----AALLGHEDFAKEILPQKPRIAEELDSRKSSALHIAS--QKGY   74 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~-----Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~--~~g~   74 (345)
                      .|+.++|+.|++.|.++...   +..|.||||+     |+..|+.+++++|++.|+++ +..|..|.||||+|+  ..|+
T Consensus        45 ~~~~~ivk~Ll~~g~~~~~~---~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~  120 (480)
T PHA03100         45 ARNIDVVKILLDNGADINSS---TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNS  120 (480)
T ss_pred             cCCHHHHHHHHHcCCCCCCc---cccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccCh
Confidence            58899999999999886544   7889999999     99999999999999999998 999999999999999  9999


Q ss_pred             HHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcC--cHHHHHHHHhcCCCcccccccCCcc-------------HHHHHHh
Q 043760           75 VGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG--HIDVLEELVRAKPDAASTRLIWVGS-------------TEVLLEN  139 (345)
Q Consensus        75 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~~~-------------~~~l~~~  139 (345)
                      .+++++|+++|+++ +..+..|.||||+|+..|  +.+++++|++.|++...... .+.+             ++.|++.
T Consensus       121 ~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~-~g~tpL~~A~~~~~~~iv~~Ll~~  198 (480)
T PHA03100        121 YSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR-YGYTPLHIAVEKGNIDVIKFLLDN  198 (480)
T ss_pred             HHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccC-CCCCHHHHHHHhCCHHHHHHHHHc
Confidence            99999999999998 789999999999999999  99999999999998654432 4443             7777877


Q ss_pred             cCCcccccccCCCC------CCHHHHHHHcCC--HHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHH
Q 043760          140 MGDFELLNAKDDYG------MTILLLAVADKQ--IEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLR  211 (345)
Q Consensus       140 ~~~~~~~~~~d~~g------~t~Lh~A~~~g~--~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~  211 (345)
                      +.+   ++..+..|      .||||+|+..|+  .+++++|++. |++++.+|..|.||||+|+.    .++.+++++|+
T Consensus       199 ga~---~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~-g~din~~d~~g~TpL~~A~~----~~~~~iv~~Ll  270 (480)
T PHA03100        199 GAD---INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY-GVPINIKDVYGFTPLHYAVY----NNNPEFVKYLL  270 (480)
T ss_pred             CCC---ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHH
Confidence            766   77888888      899999999999  9999999999 89999999999999999999    78899999999


Q ss_pred             HcccccccccCCccchh
Q 043760          212 RAGAISAKDLQLPVNEL  228 (345)
Q Consensus       212 ~~ga~~~~~~~~~~~~~  228 (345)
                      +.|++++.....+..++
T Consensus       271 ~~gad~n~~d~~g~tpl  287 (480)
T PHA03100        271 DLGANPNLVNKYGDTPL  287 (480)
T ss_pred             HcCCCCCccCCCCCcHH
Confidence            99998866444444443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=1.9e-29  Score=244.55  Aligned_cols=219  Identities=14%  Similarity=0.038  Sum_probs=176.4

Q ss_pred             CCCHHHHHHHHhcC-CccccCCCCCCCCCcHHHHHHHc--CCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCC--HH
Q 043760            2 AGSVNTLLELRQQD-PLILERPTVNCLSETPLHVAALL--GHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGY--VG   76 (345)
Q Consensus         2 ~g~~~~v~~ll~~~-~~~~~~~~~~~~g~t~Lh~Aa~~--g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~--~~   76 (345)
                      .++.++|+.|++.+ +++....  |..|.||||+|+..  ++.+++++|+++|+++ +.+|..|.||||+|+..|+  .+
T Consensus       152 ~v~leiVk~LLe~G~ADIN~~~--d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV-N~kD~~G~TPLH~Aa~~g~~~~e  228 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNLNYVC--KKTGYGILHAYLGNMYVDIDILEWLCNNGVNV-NLQNNHLITPLHTYLITGNVCAS  228 (764)
T ss_pred             CCCHHHHHHHHHCCCCCccccc--CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCHH
Confidence            47899999999999 7754321  77899999998754  6899999999999998 9999999999999999995  58


Q ss_pred             HHHHHHhhCCCCCcCCCCCCCcHHHHHH---HcCcHHHHHHHHhcCCCccccc-------------ccCCccHHHHHHhc
Q 043760           77 IVKALLQVIPDKCSDTDVDGRNPLHLAA---MRGHIDVLEELVRAKPDAASTR-------------LIWVGSTEVLLENM  140 (345)
Q Consensus        77 iv~~Ll~~~~~~~~~~d~~g~tpLh~A~---~~g~~~iv~~Ll~~~~~~~~~~-------------~~~~~~~~~l~~~~  140 (345)
                      +|++|+++|+++ +.+|..|+||||.|+   ..++.++++.|++.+.......             ......++.|++.+
T Consensus       229 IVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G  307 (764)
T PHA02716        229 VIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG  307 (764)
T ss_pred             HHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC
Confidence            999999999999 889999999999885   4678999999987643321110             01112267777777


Q ss_pred             CCcccccccCCCCCCHHHHHHH--cCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhc----------CCCCchhhHHH
Q 043760          141 GDFELLNAKDDYGMTILLLAVA--DKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQS----------KRDIKDWDTGE  208 (345)
Q Consensus       141 ~~~~~~~~~d~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~----------~~~~~~~~i~~  208 (345)
                      .+   ++.+|..|+||||+|+.  .++.+++++|++. |++++.+|..|+||||+|+..          ....++.++++
T Consensus       308 Ad---IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~-GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVk  383 (764)
T PHA02716        308 VK---LHYKDSAGRTCLHQYILRHNISTDIIKLLHEY-GNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQ  383 (764)
T ss_pred             Cc---eeccCCCCCCHHHHHHHHhCCCchHHHHHHHc-CCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHH
Confidence            66   89999999999999874  4689999999998 999999999999999998641          01135789999


Q ss_pred             HHHHcccccccccCCccchh
Q 043760          209 LLRRAGAISAKDLQLPVNEL  228 (345)
Q Consensus       209 ~L~~~ga~~~~~~~~~~~~~  228 (345)
                      +|+++|+++.........++
T Consensus       384 lLL~~GADIn~kn~~G~TPL  403 (764)
T PHA02716        384 CLISLGADITAVNCLGYTPL  403 (764)
T ss_pred             HHHHCCCCCCCcCCCCCChH
Confidence            99999999876444444443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=5e-29  Score=238.42  Aligned_cols=201  Identities=16%  Similarity=0.152  Sum_probs=148.3

Q ss_pred             CCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHc---CCHHHHHHHhcCCCCcccccCCCCchHHHHHHHc--CCHHH
Q 043760            3 GSVNTLLELRQQDPLILERPTVNCLSETPLHVAALL---GHEDFAKEILPQKPRIAEELDSRKSSALHIASQK--GYVGI   77 (345)
Q Consensus         3 g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~--g~~~i   77 (345)
                      |..++++.|++.|+++..+   +..|.||||+|+..   |+.+++++|+++|+++.+.+|..|+||||+|+..  ++.++
T Consensus        86 ~~~~iv~~Ll~~Gadin~~---d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~i  162 (494)
T PHA02989         86 KIKKIVKLLLKFGADINLK---TFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDV  162 (494)
T ss_pred             hHHHHHHHHHHCCCCCCCC---CCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHH
Confidence            3456777777777775443   66777887777654   5677778888777776446677777888777654  46777


Q ss_pred             HHHHHhhCCCCCcCCCCCCCcHHHHHHHcC----cHHHHHHHHhcCCCcccccccCCcc-------------------HH
Q 043760           78 VKALLQVIPDKCSDTDVDGRNPLHLAAMRG----HIDVLEELVRAKPDAASTRLIWVGS-------------------TE  134 (345)
Q Consensus        78 v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g----~~~iv~~Ll~~~~~~~~~~~~~~~~-------------------~~  134 (345)
                      +++|+++|+++....+..|.||||+|++.+    +.+++++|+++|++...... .+.+                   ++
T Consensus       163 v~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~-~~~t~l~~~~~~~~~~~~~~~~il~  241 (494)
T PHA02989        163 IKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNN-GSESVLESFLDNNKILSKKEFKVLN  241 (494)
T ss_pred             HHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCC-ccccHHHHHHHhchhhcccchHHHH
Confidence            888888777773335667778887776654    67778888877776543322 1111                   11


Q ss_pred             HHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcc
Q 043760          135 VLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAG  214 (345)
Q Consensus       135 ~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~g  214 (345)
                      ++. .+.   .+|.+|..|+||||+|+..|+.+++++|++. |+|++.+|..|+||||+|+.    .++.++++.|++.+
T Consensus       242 ~l~-~~a---dvn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~-Gadin~~d~~G~TpL~~A~~----~~~~~iv~~LL~~~  312 (494)
T PHA02989        242 FIL-KYI---KINKKDKKGFNPLLISAKVDNYEAFNYLLKL-GDDIYNVSKDGDTVLTYAIK----HGNIDMLNRILQLK  312 (494)
T ss_pred             HHH-hCC---CCCCCCCCCCCHHHHHHHhcCHHHHHHHHHc-CCCccccCCCCCCHHHHHHH----cCCHHHHHHHHhcC
Confidence            122 222   3789999999999999999999999999999 99999999999999999999    78899999999876


Q ss_pred             cc
Q 043760          215 AI  216 (345)
Q Consensus       215 a~  216 (345)
                      ..
T Consensus       313 p~  314 (494)
T PHA02989        313 PG  314 (494)
T ss_pred             CC
Confidence            53

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=3.3e-29  Score=242.98  Aligned_cols=186  Identities=20%  Similarity=0.207  Sum_probs=162.2

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCC--HHHHHHHhcCCCCcccccCCCCchHHHHH----------
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGH--EDFAKEILPQKPRIAEELDSRKSSALHIA----------   69 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~--~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A----------   69 (345)
                      .|+.++++.|++.|+++..+   |..|.||||+|+..|+  .+++++|++.|+++ +.+|..|+||||+|          
T Consensus       189 ~~~~eIVklLLe~GADVN~k---D~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~E  264 (764)
T PHA02716        189 YVDIDILEWLCNNGVNVNLQ---NNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPE  264 (764)
T ss_pred             cCCHHHHHHHHHcCCCCCCC---CCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHH
Confidence            36789999999999987665   8899999999999995  59999999999998 99999999999975          


Q ss_pred             ---------------------------HHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHH--cCcHHHHHHHHhcCC
Q 043760           70 ---------------------------SQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM--RGHIDVLEELVRAKP  120 (345)
Q Consensus        70 ---------------------------~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~--~g~~~iv~~Ll~~~~  120 (345)
                                                 +..|+.+++++|+++|+++ +.+|..|+||||+|+.  .++.+++++|++.|+
T Consensus       265 IvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GA  343 (764)
T PHA02716        265 ITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGN  343 (764)
T ss_pred             HHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCC
Confidence                                       4457889999999999998 7899999999999865  467899999999999


Q ss_pred             CcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHH--------------cCCHHHHHHhhhcCCccccccCCC
Q 043760          121 DAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVA--------------DKQIEAIKFLTTSTAIEVNAVTAN  186 (345)
Q Consensus       121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~--------------~g~~~~v~~Ll~~~~~~~~~~n~~  186 (345)
                      +                        ++.+|..|+||||+|+.              .++.+++++|+++ |++++.+|..
T Consensus       344 D------------------------IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~-GADIn~kn~~  398 (764)
T PHA02716        344 D------------------------LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL-GADITAVNCL  398 (764)
T ss_pred             C------------------------CccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHC-CCCCCCcCCC
Confidence            8                        89999999999999875              3689999999999 9999999999


Q ss_pred             CCcHHHHHHhcCCCCchhhHHHHHHHccccc
Q 043760          187 GFTAWDILAQSKRDIKDWDTGELLRRAGAIS  217 (345)
Q Consensus       187 g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~  217 (345)
                      |+||||.++......+..+++++|++.|+..
T Consensus       399 G~TPLh~y~~~a~n~~~~dIvklLis~~~~~  429 (764)
T PHA02716        399 GYTPLTSYICTAQNYMYYDIIDCLISDKVLN  429 (764)
T ss_pred             CCChHHHHHHHHHhcChHHHHHHHHhCcchh
Confidence            9999995332222256789999999988754

>PHA03095 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.6e-28  Score=232.75  Aligned_cols=178  Identities=24%  Similarity=0.235  Sum_probs=143.4

Q ss_pred             HHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcC---CHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcC-c
Q 043760           33 HVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKG---YVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG-H  108 (345)
Q Consensus        33 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g-~  108 (345)
                      ..++..++.+++++|++.|+++ +.++..|.||||+|+..|   +.+++++|++.|+++ +..+..|.||||+|+..| +
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~v-n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~~~   96 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADV-NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGFTPLHLYLYNATT   96 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCc-ccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCc
Confidence            4567789999999999999998 899999999999999999   999999999999999 889999999999999999 5


Q ss_pred             HHHHHHHHhcCCCcccccccCCcc---------------HHHHHHhcCCcccccccCCCCCCHHHHHHHcC--CHHHHHH
Q 043760          109 IDVLEELVRAKPDAASTRLIWVGS---------------TEVLLENMGDFELLNAKDDYGMTILLLAVADK--QIEAIKF  171 (345)
Q Consensus       109 ~~iv~~Ll~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~~v~~  171 (345)
                      .+++++|++.|++..... ..|.+               ++.|++.+.+   ++.+|..|.||||+|+..+  +.+++++
T Consensus        97 ~~iv~lLl~~ga~in~~~-~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad---~~~~d~~g~tpL~~a~~~~~~~~~iv~~  172 (471)
T PHA03095         97 LDVIKLLIKAGADVNAKD-KVGRTPLHVYLSGFNINPKVIRLLLRKGAD---VNALDLYGMTPLAVLLKSRNANVELLRL  172 (471)
T ss_pred             HHHHHHHHHcCCCCCCCC-CCCCCHHHHHhhCCcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCCCHHHHHH
Confidence            999999999999865432 22222               6667776666   7788888888888887765  5778888


Q ss_pred             hhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          172 LTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       172 Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      |++. |++++..|..|+||||+++...  .+..++++.|++.|+++..
T Consensus       173 Ll~~-g~~~~~~d~~g~t~Lh~~~~~~--~~~~~i~~~Ll~~g~~~~~  217 (471)
T PHA03095        173 LIDA-GADVYAVDDRFRSLLHHHLQSF--KPRARIVRELIRAGCDPAA  217 (471)
T ss_pred             HHHc-CCCCcccCCCCCCHHHHHHHHC--CCcHHHHHHHHHcCCCCcc
Confidence            8877 7777777777888887776522  2345667777777766644

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=3.4e-29  Score=229.86  Aligned_cols=167  Identities=26%  Similarity=0.312  Sum_probs=155.1

Q ss_pred             CCCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHH
Q 043760            1 MAGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKA   80 (345)
Q Consensus         1 ~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~   80 (345)
                      ++++++++++|++++++++..-  ..-+.||||+||++|+..+|.+|+++|+++ +.+|.+|.+|||+|+..|+.-+|-+
T Consensus        87 iNNrl~v~r~li~~gadvn~~g--G~l~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vay  163 (600)
T KOG0509|consen   87 INNRLDVARYLISHGADVNAIG--GVLGSTPLHWAARNGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAY  163 (600)
T ss_pred             HcCcHHHHHHHHHcCCCccccC--CCCCCCcchHHHHcCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHH
Confidence            4789999999999999976542  267899999999999999999999999999 9999999999999999999999999


Q ss_pred             HHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccC-CCCCCHHHH
Q 043760           81 LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKD-DYGMTILLL  159 (345)
Q Consensus        81 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d-~~g~t~Lh~  159 (345)
                      ||.+++++ +.+|.+|+||||+|+..|....+..|+..++.                        ++.+| ..|+||||+
T Consensus       164 ll~~~~d~-d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~------------------------~~~~d~~~g~TpLHw  218 (600)
T KOG0509|consen  164 LLSKGADI-DLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS------------------------LLLTDDNHGNTPLHW  218 (600)
T ss_pred             HHHhcccC-CCcCCCCCCHHHHHHHhcccHHHHHHHHhccc------------------------ccccccccCCchHHH
Confidence            99999998 89999999999999999998889999999988                        66666 899999999


Q ss_pred             HHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHh
Q 043760          160 AVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ  196 (345)
Q Consensus       160 A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~  196 (345)
                      |+..|+..++. |+..+|++.+.+|.+|.||+++|..
T Consensus       219 a~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~  254 (600)
T KOG0509|consen  219 AVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQE  254 (600)
T ss_pred             HHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHH
Confidence            99999999999 6666599999999999999999988

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.7e-28  Score=206.63  Aligned_cols=175  Identities=14%  Similarity=0.088  Sum_probs=132.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcC--CHHHHHHHHhhCCCCCcCCC-CCCCcHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKG--YVGIVKALLQVIPDKCSDTD-VDGRNPLH  101 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh  101 (345)
                      ...+.||||+|+..|+.++|+.|++.    .+..|..|.||||+|+..+  +.+++++|+++|+++ +..+ ..|.||||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh   92 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALH   92 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHH
Confidence            45678888888888888888888864    2556788888888888754  788888888888888 5554 57888888


Q ss_pred             HHHHc---CcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHH--cCCHHHHHHhhhcC
Q 043760          102 LAAMR---GHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVA--DKQIEAIKFLTTST  176 (345)
Q Consensus       102 ~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~--~g~~~~v~~Ll~~~  176 (345)
                      +|+..   ++.+++++|+++|++                        ++.+|..|.||||+|+.  .++.+++++|++. 
T Consensus        93 ~a~~~~~~~~~eiv~~Ll~~gad------------------------in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~-  147 (209)
T PHA02859         93 HYLSFNKNVEPEILKILIDSGSS------------------------ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS-  147 (209)
T ss_pred             HHHHhCccccHHHHHHHHHCCCC------------------------CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc-
Confidence            87653   468888888888887                        78888888888888775  3578888888887 


Q ss_pred             CccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccchhhhcc
Q 043760          177 AIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELAVTQ  232 (345)
Q Consensus       177 ~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  232 (345)
                      |++++.+|..|.||||.++..   .++.+++++|++.|+++.........++.+..
T Consensus       148 gadin~~d~~g~t~Lh~~a~~---~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~  200 (209)
T PHA02859        148 GVSFLNKDFDNNNILYSYILF---HSDKKIFDFLTSLGIDINETNKSGYNCYDLIK  200 (209)
T ss_pred             CCCcccccCCCCcHHHHHHHh---cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence            788888888888888864331   45678888888888877665455555544443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.4e-28  Score=232.97  Aligned_cols=176  Identities=22%  Similarity=0.211  Sum_probs=158.3

Q ss_pred             HHHHHHHHhcCCccccCCCCCCC-CCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHh
Q 043760            5 VNTLLELRQQDPLILERPTVNCL-SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ   83 (345)
Q Consensus         5 ~~~v~~ll~~~~~~~~~~~~~~~-g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~   83 (345)
                      .++++.|++.|+++...   +.. |.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++
T Consensus       147 ~~iv~~Ll~~gadin~~---~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~  222 (477)
T PHA02878        147 AEITKLLLSYGADINMK---DRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLE  222 (477)
T ss_pred             HHHHHHHHHcCCCCCcc---CCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            45889999999886654   667 999999999999999999999999998 8899999999999999999999999999


Q ss_pred             hCCCCCcCCCCCCCcHHHHHHHc-CcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCC-CCCCHHHHHH
Q 043760           84 VIPDKCSDTDVDGRNPLHLAAMR-GHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDD-YGMTILLLAV  161 (345)
Q Consensus        84 ~~~~~~~~~d~~g~tpLh~A~~~-g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~-~g~t~Lh~A~  161 (345)
                      .|+++ +..|..|.||||+|+.. ++.+++++|+++|++                        ++.++. .|.||||+| 
T Consensus       223 ~ga~i-n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad------------------------vn~~~~~~g~TpLh~A-  276 (477)
T PHA02878        223 NGAST-DARDKCGNTPLHISVGYCKDYDILKLLLEHGVD------------------------VNAKSYILGLTALHSS-  276 (477)
T ss_pred             cCCCC-CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC------------------------CCccCCCCCCCHHHHH-
Confidence            99999 88999999999999976 789999999999998                        777775 799999999 


Q ss_pred             HcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccc
Q 043760          162 ADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGA  215 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga  215 (345)
                       .++.+++++|++. |+|+|.+|..|+||||+|+..   ....++.++|+..++
T Consensus       277 -~~~~~~v~~Ll~~-gadin~~d~~g~TpL~~A~~~---~~~~~~~~~li~~~~  325 (477)
T PHA02878        277 -IKSERKLKLLLEY-GADINSLNSYKLTPLSSAVKQ---YLCINIGRILISNIC  325 (477)
T ss_pred             -ccCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHH---cCccchHHHHHHHHH
Confidence             5788999999999 999999999999999999872   234567777776654

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=8.6e-28  Score=238.58  Aligned_cols=76  Identities=17%  Similarity=0.186  Sum_probs=57.8

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      +|+.++++.|++.|.++...   |..|.||||+||..|+.++|++|++.|+++ +..+..|.||||+|+..|+.+++++|
T Consensus       155 ~~~~~i~k~Ll~~Gadvn~~---d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~-n~~~~~g~t~L~~A~~~~~~~ivk~L  230 (682)
T PHA02876        155 QDELLIAEMLLEGGADVNAK---DIYCITPIHYAAERGNAKMVNLLLSYGADV-NIIALDDLSVLECAVDSKNIDTIKAI  230 (682)
T ss_pred             CCcHHHHHHHHhCCCCCCCC---CCCCCCHHHHHHHCCCHHHHHHHHHCCCCc-CccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            58899999999999987654   889999999999999999999999998876 55555555555555554444444333

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=7.3e-28  Score=226.04  Aligned_cols=210  Identities=18%  Similarity=0.136  Sum_probs=171.1

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHH--cCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAAL--LGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVK   79 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~   79 (345)
                      .|+.+.++.+++...        ...+.++||.++.  .++.+++++|+++|+++ +.+|..|.||||+|+..|+.++++
T Consensus        19 ~~n~~~~~~~l~~~~--------~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~G~TpLh~Aa~~g~~eiv~   89 (446)
T PHA02946         19 SKNLDVFRNMLQAIE--------PSGNYHILHAYCGIKGLDERFVEELLHRGYSP-NETDDDGNYPLHIASKINNNRIVA   89 (446)
T ss_pred             cCcHHHHHHHHhccC--------CCCCChHHHHHHHhcCCCHHHHHHHHHCcCCC-CccCCCCCCHHHHHHHcCCHHHHH
Confidence            356666666665421        2234799998774  45789999999999998 999999999999999999999999


Q ss_pred             HHHhhCCCCCcCCCCCCCcHHHHHHHcC--cHHHHHHHHhcCCCcccccccCCcc------------HHHHHHhcCCccc
Q 043760           80 ALLQVIPDKCSDTDVDGRNPLHLAAMRG--HIDVLEELVRAKPDAASTRLIWVGS------------TEVLLENMGDFEL  145 (345)
Q Consensus        80 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~~~------------~~~l~~~~~~~~~  145 (345)
                      +|+++|+++ +.+|..|+||||+|+..+  ..+++++|+++|++.....+..+.+            ++.|++.+.+   
T Consensus        90 lLL~~GAdi-n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad---  165 (446)
T PHA02946         90 MLLTHGADP-NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFE---  165 (446)
T ss_pred             HHHHCcCCC-CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhcccc---
Confidence            999999999 789999999999998876  4899999999999876544444433            6777777666   


Q ss_pred             ccccCCCCCCHHHHHHHcC--CHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCC
Q 043760          146 LNAKDDYGMTILLLAVADK--QIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQL  223 (345)
Q Consensus       146 ~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~  223 (345)
                      ++.+|..|+||||+|+..+  +.+++++|++. |++++.+|..|+||||+|+..+  ..+.+++++|+. |++.+.....
T Consensus       166 ~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~-Gadin~~d~~G~TpLH~Aa~~~--~~~~~iv~lLl~-gadin~~d~~  241 (446)
T PHA02946        166 ARIVDKFGKNHIHRHLMSDNPKASTISWMMKL-GISPSKPDHDGNTPLHIVCSKT--VKNVDIINLLLP-STDVNKQNKF  241 (446)
T ss_pred             ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcC--CCcHHHHHHHHc-CCCCCCCCCC
Confidence            8999999999999998765  46899999999 9999999999999999999822  236789999985 8888765544


Q ss_pred             ccchh
Q 043760          224 PVNEL  228 (345)
Q Consensus       224 ~~~~~  228 (345)
                      ..+++
T Consensus       242 G~TpL  246 (446)
T PHA02946        242 GDSPL  246 (446)
T ss_pred             CCCHH
Confidence            44444

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1e-28  Score=231.08  Aligned_cols=205  Identities=26%  Similarity=0.282  Sum_probs=140.5

Q ss_pred             CCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhc-----CCCCcccccCCCCchHHHHHHHcCCHHH
Q 043760            3 GSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILP-----QKPRIAEELDSRKSSALHIASQKGYVGI   77 (345)
Q Consensus         3 g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~-----~~~~~~~~~d~~g~tpLh~A~~~g~~~i   77 (345)
                      |+.|..+.|++.+++....   |..|.+|+|+|++.|..++.+.++.     ++..+ +.-+..|.||||.|+..|+.++
T Consensus       165 ~~~E~~k~Li~~~a~~~K~---~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~i-n~~~n~~~~pLhlAve~g~~e~  240 (929)
T KOG0510|consen  165 NKVEAKKELINKGADPCKS---DIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHI-NFDNNEKATPLHLAVEGGDIEM  240 (929)
T ss_pred             ChHHHHHHHHhcCCCCCcc---cCcCCchHHHHHHhcchhhhhhhhccccchhhccc-ccccCCCCcchhhhhhcCCHHH
Confidence            4455556666666665543   5566666666666666666666665     33344 5556666666666666666666


Q ss_pred             HHHHHhhCCCCC--------------cCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc-----------
Q 043760           78 VKALLQVIPDKC--------------SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS-----------  132 (345)
Q Consensus        78 v~~Ll~~~~~~~--------------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-----------  132 (345)
                      ++.+|+.|....              +..|++|.||||+|++.|+.++++.|+..|++..... .++.+           
T Consensus       241 lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn-~d~~spLH~AA~yg~~  319 (929)
T KOG0510|consen  241 LKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKN-KDEESPLHFAAIYGRI  319 (929)
T ss_pred             HHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccC-CCCCCchHHHHHcccH
Confidence            666666544321              2345666666666666666666666666666544332 22211           


Q ss_pred             --HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCcccc---ccCCCCCcHHHHHHhcCCCCchhhHH
Q 043760          133 --TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVN---AVTANGFTAWDILAQSKRDIKDWDTG  207 (345)
Q Consensus       133 --~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~---~~n~~g~T~L~~a~~~~~~~~~~~i~  207 (345)
                        ++-|++ ..+..++|..|..|+||||+|++.||..++++||++ |+...   ..|.+|+||||+|+.    .++..++
T Consensus       320 ntv~rLL~-~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~-GA~~~~~~e~D~dg~TaLH~Aa~----~g~~~av  393 (929)
T KOG0510|consen  320 NTVERLLQ-ESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK-GALFLNMSEADSDGNTALHLAAK----YGNTSAV  393 (929)
T ss_pred             HHHHHHHh-CcCccccccccccCCCchhhhhhcCHHHHHHHHHhc-ChhhhcccccccCCchhhhHHHH----hccHHHH
Confidence              455555 334456999999999999999999999999999999 66655   569999999999999    8999999


Q ss_pred             HHHHHcccccc
Q 043760          208 ELLRRAGAISA  218 (345)
Q Consensus       208 ~~L~~~ga~~~  218 (345)
                      +.|+.+||+..
T Consensus       394 ~~Li~~Ga~I~  404 (929)
T KOG0510|consen  394 QKLISHGADIG  404 (929)
T ss_pred             HHHHHcCCcee
Confidence            99999999983

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=4.9e-28  Score=220.66  Aligned_cols=189  Identities=16%  Similarity=0.073  Sum_probs=163.1

Q ss_pred             CCHHHHHHHHhcCCccccCC---CCCCCCCcHHHHHHH--cCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHH
Q 043760            3 GSVNTLLELRQQDPLILERP---TVNCLSETPLHVAAL--LGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGI   77 (345)
Q Consensus         3 g~~~~v~~ll~~~~~~~~~~---~~~~~g~t~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i   77 (345)
                      +..|+++.|+.++..+.-..   ..+..++|+||+|+.  .|+.+++++|+++|+++ +.  .++.||||.|+..|+.++
T Consensus        88 ~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A~~~~~~eI  164 (437)
T PHA02795         88 TYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRGICKKESSV  164 (437)
T ss_pred             chHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHHHHcCcHHH
Confidence            56789999999998754000   236779999999999  89999999999999998 65  355899999999999999


Q ss_pred             HHHHHhhCCCCCcCC-----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCC
Q 043760           78 VKALLQVIPDKCSDT-----DVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDY  152 (345)
Q Consensus        78 v~~Ll~~~~~~~~~~-----d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~  152 (345)
                      +++|+++|++..+..     +..|.+++|.|+..++.+++++|+++|++                        +|.+|..
T Consensus       165 Vk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD------------------------IN~kD~~  220 (437)
T PHA02795        165 VEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED------------------------INQLDAG  220 (437)
T ss_pred             HHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC------------------------cCcCCCC
Confidence            999999998553332     23488999999999999999999999999                        9999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCC----CCchhhHHHHHHHccccccc
Q 043760          153 GMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKR----DIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       153 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~----~~~~~~i~~~L~~~ga~~~~  219 (345)
                      |+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..+.    ...+.+++++|++.|++...
T Consensus       221 G~TpLh~Aa~~g~~eiVelLL~~-GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        221 GRTLLYRAIYAGYIDLVSWLLEN-GANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            99999999999999999999999 99999999999999999998431    12357899999999997754

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=9.3e-28  Score=203.39  Aligned_cols=162  Identities=20%  Similarity=0.246  Sum_probs=145.6

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcC--CHHHHHHHhcCCCCcccccC-CCCchHHHHHHHc---CCH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLG--HEDFAKEILPQKPRIAEELD-SRKSSALHIASQK---GYV   75 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~---g~~   75 (345)
                      .|+++.|+.|++..      ...|..|.||||+|+..+  +.+++++|++.|+++ +.++ ..|.||||+|+..   ++.
T Consensus        31 ~~~~~~vk~Li~~~------n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a~~~~~~~~~  103 (209)
T PHA02859         31 KDDIEGVKKWIKFV------NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHYLSFNKNVEP  103 (209)
T ss_pred             hCcHHHHHHHHHhh------hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHHHHhCccccH
Confidence            58999999999752      224888999999999854  899999999999998 7776 5899999998764   479


Q ss_pred             HHHHHHHhhCCCCCcCCCCCCCcHHHHHHH--cCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCC
Q 043760           76 GIVKALLQVIPDKCSDTDVDGRNPLHLAAM--RGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYG  153 (345)
Q Consensus        76 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g  153 (345)
                      +++++|+++|+++ +..|..|.||||+|+.  .++.+++++|++.|++                        ++.+|..|
T Consensus       104 eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad------------------------in~~d~~g  158 (209)
T PHA02859        104 EILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS------------------------FLNKDFDN  158 (209)
T ss_pred             HHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC------------------------cccccCCC
Confidence            9999999999999 8899999999999986  4689999999999998                        89999999


Q ss_pred             CCHHHH-HHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHh
Q 043760          154 MTILLL-AVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ  196 (345)
Q Consensus       154 ~t~Lh~-A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~  196 (345)
                      .||||. |+..++.+++++|++. |++++.+|..|+||||+|..
T Consensus       159 ~t~Lh~~a~~~~~~~iv~~Ll~~-Gadi~~~d~~g~tpl~la~~  201 (209)
T PHA02859        159 NNILYSYILFHSDKKIFDFLTSL-GIDINETNKSGYNCYDLIKF  201 (209)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhh
Confidence            999996 5678899999999999 99999999999999999987

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=5.3e-27  Score=224.45  Aligned_cols=213  Identities=15%  Similarity=0.124  Sum_probs=133.8

Q ss_pred             CHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcC------CHHHHHHHhcCCCCcccccCCCCchHHHHHHHc---CC
Q 043760            4 SVNTLLELRQQDPLILERPTVNCLSETPLHVAALLG------HEDFAKEILPQKPRIAEELDSRKSSALHIASQK---GY   74 (345)
Q Consensus         4 ~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g------~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~---g~   74 (345)
                      +.++|+.|++.|+++...   + .+.||||.|+.++      +.+++++|+++|+++ +.+|..|.||||.|+..   |+
T Consensus        49 ~~~iv~~Ll~~GAdvn~~---~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~  123 (494)
T PHA02989         49 KIKIVKLLIDNGADVNYK---G-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINN  123 (494)
T ss_pred             ChHHHHHHHHcCCCccCC---C-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCc
Confidence            556666666666664432   2 3566666665543      345666666666665 66666666666665543   45


Q ss_pred             HHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHc--CcHHHHHHHHhcCCCcccccccCCcc-----------------HHH
Q 043760           75 VGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR--GHIDVLEELVRAKPDAASTRLIWVGS-----------------TEV  135 (345)
Q Consensus        75 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~~~~-----------------~~~  135 (345)
                      .+++++|+++|+++.+..|..|.||||+|+..  ++.+++++|++.|+++....+..+.+                 +++
T Consensus       124 ~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~  203 (494)
T PHA02989        124 CDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKY  203 (494)
T ss_pred             HHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHH
Confidence            66666666666666445666666666666543  45666666666666654321111111                 455


Q ss_pred             HHHhcCCcccccccCCCCCCHHHHHHHc------CCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHH
Q 043760          136 LLENMGDFELLNAKDDYGMTILLLAVAD------KQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGEL  209 (345)
Q Consensus       136 l~~~~~~~~~~~~~d~~g~t~Lh~A~~~------g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~  209 (345)
                      |++.+.+   ++.+|..|.|+||.++..      +..+++++|++  ++++|.+|..|+||||+|+.    .++.+++++
T Consensus       204 Ll~~Ga~---vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~--~advn~~d~~G~TpL~~Aa~----~~~~~~v~~  274 (494)
T PHA02989        204 LIKKGVN---IETNNNGSESVLESFLDNNKILSKKEFKVLNFILK--YIKINKKDKKGFNPLLISAK----VDNYEAFNY  274 (494)
T ss_pred             HHhCCCC---ccccCCccccHHHHHHHhchhhcccchHHHHHHHh--CCCCCCCCCCCCCHHHHHHH----hcCHHHHHH
Confidence            5555554   566666666666655543      23455555443  46778888899999999999    788999999


Q ss_pred             HHHcccccccccCCccchhhh
Q 043760          210 LRRAGAISAKDLQLPVNELAV  230 (345)
Q Consensus       210 L~~~ga~~~~~~~~~~~~~~~  230 (345)
                      |++.||+++.....+.+++..
T Consensus       275 LL~~Gadin~~d~~G~TpL~~  295 (494)
T PHA02989        275 LLKLGDDIYNVSKDGDTVLTY  295 (494)
T ss_pred             HHHcCCCccccCCCCCCHHHH
Confidence            999999987654444444433

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.95  E-value=8.7e-27  Score=231.41  Aligned_cols=180  Identities=21%  Similarity=0.282  Sum_probs=84.5

Q ss_pred             HHHHHHhcCCccccCCCCCCCCCcHHHHHHHcC-CHHHHHHHhcCCCCcccccCCCCchHHHHHHHc-CCHHHHHHHHhh
Q 043760            7 TLLELRQQDPLILERPTVNCLSETPLHVAALLG-HEDFAKEILPQKPRIAEELDSRKSSALHIASQK-GYVGIVKALLQV   84 (345)
Q Consensus         7 ~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g-~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-g~~~iv~~Ll~~   84 (345)
                      +++.|++.+.++...   |..|+||||+|+..| +.++++.|+..|.++ +.+|..|.||||+|+.. ++.+++++|++.
T Consensus       289 iv~lLl~~gadin~~---d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~  364 (682)
T PHA02876        289 LVPKLLERGADVNAK---NIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADRLYITPLHQASTLDRNKDIVITLLEL  364 (682)
T ss_pred             HHHHHHHCCCCCCCc---CCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHHHc
Confidence            344444444443222   444455555555444 344455555544444 44445555555555443 234555555555


Q ss_pred             CCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc--------------HHHHHHhcCCcccccccC
Q 043760           85 IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS--------------TEVLLENMGDFELLNAKD  150 (345)
Q Consensus        85 ~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~d  150 (345)
                      |+++ +.+|..|.||||+|+..|+.+++++|++.|++....... +.+              ++.|++.+.+   +|.+|
T Consensus       365 gadi-n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~-g~T~Lh~A~~~~~~~~~vk~Ll~~gad---in~~d  439 (682)
T PHA02876        365 GANV-NARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQK-IGTALHFALCGTNPYMSVKTLIDRGAN---VNSKN  439 (682)
T ss_pred             CCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCC-CCchHHHHHHcCCHHHHHHHHHhCCCC---CCcCC
Confidence            5555 455555555555555555555555555555553322111 111              2333333333   44444


Q ss_pred             CCCCCHHHHHHHcC-CHHHHHHhhhcCCccccccCCCCCcHHHHHHh
Q 043760          151 DYGMTILLLAVADK-QIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ  196 (345)
Q Consensus       151 ~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~  196 (345)
                      ..|+||||+|+..+ +.+++++|++. |++++.+|..|.|||++|+.
T Consensus       440 ~~G~TpLh~Aa~~~~~~~iv~lLl~~-Gad~n~~d~~g~tpl~~a~~  485 (682)
T PHA02876        440 KDLSTPLHYACKKNCKLDVIEMLLDN-GADVNAINIQNQYPLLIALE  485 (682)
T ss_pred             CCCChHHHHHHHhCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHH
Confidence            45555555554433 34455555544 44555555555555554444

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=1e-26  Score=226.54  Aligned_cols=196  Identities=19%  Similarity=0.157  Sum_probs=126.5

Q ss_pred             HHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHc---CCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHH----H
Q 043760            5 VNTLLELRQQDPLILERPTVNCLSETPLHVAALL---GHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVG----I   77 (345)
Q Consensus         5 ~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~----i   77 (345)
                      ++.|+.|+.++.....   +|.+|+||||+||..   |+.+++++|++.|+++ +.+|..|+||||+|+..|+.+    +
T Consensus        12 ~~~~~~l~~~~~~~~~---~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~   87 (661)
T PHA02917         12 LDELKQMLRDRDPNDT---RNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDI   87 (661)
T ss_pred             HHHHHHHHhccCcccc---cCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHH
Confidence            4567777776555432   377788888887554   7788888888888887 677888888888887766532    3


Q ss_pred             HHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc---------------HHHHHHhcCC
Q 043760           78 VKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS---------------TEVLLENMGD  142 (345)
Q Consensus        78 v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~---------------~~~l~~~~~~  142 (345)
                      ++.|++.+... +..+  ..+++|+|+..|+.++|++|+++|++.... +..+.+               ++.|++.+.+
T Consensus        88 ~~~Ll~~~~~~-n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~-d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~  163 (661)
T PHA02917         88 AMALLEATGYS-NIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVK-CENHRSVIENYVMTDDPVPEIIDLFIENGCS  163 (661)
T ss_pred             HHHHHhccCCC-CCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCcc-CCCCccHHHHHHHccCCCHHHHHHHHHcCCC
Confidence            34444432221 1111  113344444444555555555554443322 111111               3444444433


Q ss_pred             cccccccC---CCC-----------CCHHHHHHH-----------cCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhc
Q 043760          143 FELLNAKD---DYG-----------MTILLLAVA-----------DKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQS  197 (345)
Q Consensus       143 ~~~~~~~d---~~g-----------~t~Lh~A~~-----------~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~  197 (345)
                         ++.+|   ..|           .||||+|+.           .++.+++++|++. |+|+|.+|.+|+||||+|+. 
T Consensus       164 ---vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~-Gadvn~~d~~G~TpLh~A~~-  238 (661)
T PHA02917        164 ---VLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH-GIKPSSIDKNYCTALQYYIK-  238 (661)
T ss_pred             ---ccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHC-CCCcccCCCCCCcHHHHHHH-
Confidence               55443   334           599999986           5689999999999 99999999999999999999 


Q ss_pred             CCCCch--hhHHHHHHHccccc
Q 043760          198 KRDIKD--WDTGELLRRAGAIS  217 (345)
Q Consensus       198 ~~~~~~--~~i~~~L~~~ga~~  217 (345)
                         .++  .+++++|++ |++.
T Consensus       239 ---~g~~~~eivk~Li~-g~d~  256 (661)
T PHA02917        239 ---SSHIDIDIVKLLMK-GIDN  256 (661)
T ss_pred             ---cCCCcHHHHHHHHh-CCcc
Confidence               555  479999975 7755

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=3.1e-27  Score=209.02  Aligned_cols=154  Identities=25%  Similarity=0.332  Sum_probs=80.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHc
Q 043760           27 LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR  106 (345)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  106 (345)
                      .|-+||-.|+..||+++|+.|+++++++ |.......|||--||.-|+.++|++|+++|+|+ ++.|..|.|.||+|+..
T Consensus        83 egappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~yk  160 (615)
T KOG0508|consen   83 EGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYK  160 (615)
T ss_pred             CCCchhhHHhccCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeecc
Confidence            3445555555555555555555555444 444444445555555555555555555555555 45555555555555555


Q ss_pred             CcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCC
Q 043760          107 GHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTAN  186 (345)
Q Consensus       107 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~  186 (345)
                      |+.+|+++|++.|++                        +|.++..|+|+||.+++.|+.+++++|+++ |+.+. +|..
T Consensus       161 Gh~~I~qyLle~gAD------------------------vn~ks~kGNTALH~caEsG~vdivq~Ll~~-ga~i~-~d~~  214 (615)
T KOG0508|consen  161 GHVDIAQYLLEQGAD------------------------VNAKSYKGNTALHDCAESGSVDIVQLLLKH-GAKID-VDGH  214 (615)
T ss_pred             CchHHHHHHHHhCCC------------------------cchhcccCchHHHhhhhcccHHHHHHHHhC-Cceee-ecCC
Confidence            555555555555555                        555555555555555555555555555555 43333 2333


Q ss_pred             CCcHHHHHHhcCCCCchhhHHHHHHH
Q 043760          187 GFTAWDILAQSKRDIKDWDTGELLRR  212 (345)
Q Consensus       187 g~T~L~~a~~~~~~~~~~~i~~~L~~  212 (345)
                      |.|||..|+.    .++.+++++|+.
T Consensus       215 GmtPL~~Aa~----tG~~~iVe~L~~  236 (615)
T KOG0508|consen  215 GMTPLLLAAV----TGHTDIVERLLQ  236 (615)
T ss_pred             CCchHHHHhh----hcchHHHHHHhc
Confidence            5555555555    455555555554

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=6.4e-27  Score=207.04  Aligned_cols=144  Identities=26%  Similarity=0.336  Sum_probs=129.9

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|++++|+.|++++++++..   .....|||..||.-|+.+++++|+++++++ +..|..|.|+||+||..||.+|+++|
T Consensus        94 AGHl~vVk~L~~~ga~VN~t---T~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyL  169 (615)
T KOG0508|consen   94 AGHLEVVKLLLRRGASVNDT---TRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYL  169 (615)
T ss_pred             cCcHHHHHHHHHhcCccccc---cccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHH
Confidence            48999999999999775543   566789999999999999999999999998 99999999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      ++.|+|+ +.++..|.|+||.|++.|+.+++++|+.+|+.                         -.+|..|.|||..|+
T Consensus       170 le~gADv-n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~-------------------------i~~d~~GmtPL~~Aa  223 (615)
T KOG0508|consen  170 LEQGADV-NAKSYKGNTALHDCAESGSVDIVQLLLKHGAK-------------------------IDVDGHGMTPLLLAA  223 (615)
T ss_pred             HHhCCCc-chhcccCchHHHhhhhcccHHHHHHHHhCCce-------------------------eeecCCCCchHHHHh
Confidence            9999999 89999999999999999999999999999885                         346777999999999


Q ss_pred             HcCCHHHHHHhhhc
Q 043760          162 ADKQIEAIKFLTTS  175 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~  175 (345)
                      ..|+.++|++|++.
T Consensus       224 ~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  224 VTGHTDIVERLLQC  237 (615)
T ss_pred             hhcchHHHHHHhcC
Confidence            99999999999963

>PHA02917 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.2e-25  Score=219.19  Aligned_cols=219  Identities=14%  Similarity=0.011  Sum_probs=163.1

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHH--HcCCHHHHHHHhcCCCCcccccCC---CC-----------chH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAA--LLGHEDFAKEILPQKPRIAEELDS---RK-----------SSA   65 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa--~~g~~~~v~~Ll~~~~~~~~~~d~---~g-----------~tp   65 (345)
                      .|+.++|+.|++.|.++..+   |..|+||||+|+  ..|+.+++++|+++|+++ +.+|.   .|           .||
T Consensus       113 ~~~~e~vk~Ll~~Gadin~~---d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~~~~~t~  188 (661)
T PHA02917        113 NVDVDLIKVLVEHGFDLSVK---CENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQPRNCGTV  188 (661)
T ss_pred             cCCHHHHHHHHHcCCCCCcc---CCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-cccccccccccccccccccccccH
Confidence            57899999999999987665   888999999654  478999999999999987 54432   34           599


Q ss_pred             HHHHHH-----------cCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcH--HHHHHHHhcCCCccc--------
Q 043760           66 LHIASQ-----------KGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI--DVLEELVRAKPDAAS--------  124 (345)
Q Consensus        66 Lh~A~~-----------~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~--~iv~~Ll~~~~~~~~--------  124 (345)
                      ||+|+.           .++.+++++|+++|+++ +..|.+|.||||+|+..|+.  ++|++|++ |++...        
T Consensus       189 L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadv-n~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~  266 (661)
T PHA02917        189 LHLYIISHLYSESDTRAYVRPEVVKCLINHGIKP-SSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLT  266 (661)
T ss_pred             HHHHHhhcccccccccccCcHHHHHHHHHCCCCc-ccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcc
Confidence            999986           46899999999999999 88999999999999998874  68888765 432110        


Q ss_pred             -c-------------c-----c--------cCC-------------------------------------------c---
Q 043760          125 -T-------------R-----L--------IWV-------------------------------------------G---  131 (345)
Q Consensus       125 -~-------------~-----~--------~~~-------------------------------------------~---  131 (345)
                       .             .     +        ..|                                           .   
T Consensus       267 ~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~  346 (661)
T PHA02917        267 CCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDI  346 (661)
T ss_pred             cccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcH
Confidence             0             0     0        000                                           0   


Q ss_pred             -cHHHHHHhcCC---------------------------cccccccCCCCCCHHHHHHHcC-------------------
Q 043760          132 -STEVLLENMGD---------------------------FELLNAKDDYGMTILLLAVADK-------------------  164 (345)
Q Consensus       132 -~~~~l~~~~~~---------------------------~~~~~~~d~~g~t~Lh~A~~~g-------------------  164 (345)
                       .++.|++.+++                           +..++.++..|.||||.|++.+                   
T Consensus       347 ~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~  426 (661)
T PHA02917        347 PLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMS  426 (661)
T ss_pred             HHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhh
Confidence             02333333321                           1113445567999999987533                   


Q ss_pred             ----CHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccchhhhc
Q 043760          165 ----QIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELAVT  231 (345)
Q Consensus       165 ----~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  231 (345)
                          ..+++++|+++ |+++|.+|..|+||||+|+.    .++.+++++|++.|++.+........++...
T Consensus       427 ~~~~~~~~v~~Ll~~-GAdIN~kd~~G~TpLh~Aa~----~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A  492 (661)
T PHA02917        427 YACPILSTINICLPY-LKDINMIDKRGETLLHKAVR----YNKQSLVSLLLESGSDVNIRSNNGYTCIAIA  492 (661)
T ss_pred             hhhhhHHHHHHHHHC-CCCCCCCCCCCcCHHHHHHH----cCCHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence                35678999999 99999999999999999999    7788999999999999876544444444433

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=1.7e-25  Score=209.72  Aligned_cols=197  Identities=23%  Similarity=0.218  Sum_probs=114.8

Q ss_pred             HHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhh
Q 043760            5 VNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV   84 (345)
Q Consensus         5 ~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~   84 (345)
                      ++.|+.|++.|++....   |.++.+|+|+|+..|+.++++.|++.+.++ +..|..|.||||.||..++.|..+.|++.
T Consensus       101 ~~~i~~Lls~gad~~~~---n~~~~aplh~A~~~~~~s~L~~Ll~~~~dv-nl~de~~~TpLh~A~~~~~~E~~k~Li~~  176 (929)
T KOG0510|consen  101 GDKIQVLLSYGADTPLR---NLNKNAPLHLAADSGNYSCLKLLLDYGADV-NLEDENGFTPLHLAARKNKVEAKKELINK  176 (929)
T ss_pred             HHHHHHHHhcCCCCChh---hhhccCchhhccccchHHHHHHHHHhcCCc-cccccCCCchhhHHHhcChHHHHHHHHhc
Confidence            45556666665553332   555566666666666666666666666555 55566666666666666666655556666


Q ss_pred             CCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHh-----cCCCcccccccCCcc-------------HHHHHHhcCC----
Q 043760           85 IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR-----AKPDAASTRLIWVGS-------------TEVLLENMGD----  142 (345)
Q Consensus        85 ~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~-----~~~~~~~~~~~~~~~-------------~~~l~~~~~~----  142 (345)
                      |+++ ...|.+|.+|+|.|++.|..++.+.++.     ++..++... ..+.+             ++.+++.++.    
T Consensus       177 ~a~~-~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~-n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~  254 (929)
T KOG0510|consen  177 GADP-CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDN-NEKATPLHLAVEGGDIEMLKMCLQNGKKIADV  254 (929)
T ss_pred             CCCC-CcccCcCCchHHHHHHhcchhhhhhhhccccchhhccccccc-CCCCcchhhhhhcCCHHHHHHHHhCccccchh
Confidence            6665 4555555555555555555555555555     222111111 11111             2222222211    


Q ss_pred             --------cccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHH
Q 043760          143 --------FELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRR  212 (345)
Q Consensus       143 --------~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~  212 (345)
                              ..++|.+|++|.||||+|++.|+++.++.|+.. |++++.+|+++.||||.|+.    ++.+..++-|++
T Consensus       255 ~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~-Ga~I~~kn~d~~spLH~AA~----yg~~ntv~rLL~  327 (929)
T KOG0510|consen  255 QLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGF-GASINSKNKDEESPLHFAAI----YGRINTVERLLQ  327 (929)
T ss_pred             hhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHc-CCcccccCCCCCCchHHHHH----cccHHHHHHHHh
Confidence                    123667778888888888888888888888877 77888888887788888777    555555555555

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=2.2e-25  Score=224.58  Aligned_cols=163  Identities=24%  Similarity=0.226  Sum_probs=150.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  104 (345)
                      +..+.++||.||..|+.++++.|++.|.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~  599 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAI  599 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHH
Confidence            556789999999999999999999999998 899999999999999999999999999999999 889999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccC
Q 043760          105 MRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVT  184 (345)
Q Consensus       105 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n  184 (345)
                      ..|+.+++++|++.+..                        .+  ...|.++||.|+..|+.++++.|+++ |+|+|.+|
T Consensus       600 ~~g~~~iv~~L~~~~~~------------------------~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~-Gadin~~d  652 (823)
T PLN03192        600 SAKHHKIFRILYHFASI------------------------SD--PHAAGDLLCTAAKRNDLTAMKELLKQ-GLNVDSED  652 (823)
T ss_pred             HhCCHHHHHHHHhcCcc------------------------cC--cccCchHHHHHHHhCCHHHHHHHHHC-CCCCCCCC
Confidence            99999999999987654                        22  24577999999999999999999999 99999999


Q ss_pred             CCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccc
Q 043760          185 ANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKD  220 (345)
Q Consensus       185 ~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  220 (345)
                      .+|+||||+|+.    .++.+++++|+++||+....
T Consensus       653 ~~G~TpLh~A~~----~g~~~iv~~Ll~~GAdv~~~  684 (823)
T PLN03192        653 HQGATALQVAMA----EDHVDMVRLLIMNGADVDKA  684 (823)
T ss_pred             CCCCCHHHHHHH----CCcHHHHHHHHHcCCCCCCC
Confidence            999999999999    88999999999999988653

>PHA02730 ankyrin-like protein; Provisional

Probab=99.93  E-value=8.9e-25  Score=208.49  Aligned_cols=205  Identities=18%  Similarity=0.123  Sum_probs=163.7

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHH--HHHcCCHHHHHHHhc------------------------------
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHV--AALLGHEDFAKEILP------------------------------   49 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~--Aa~~g~~~~v~~Ll~------------------------------   49 (345)
                      +++.|+++.|+++|+++..+   |..|+||||+  |+..|+.|++++|++                              
T Consensus       212 ~n~~eiv~lLIs~GadIN~k---d~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (672)
T PHA02730        212 SLSKDVIKCLIDNNVSIHGR---DEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRV  288 (672)
T ss_pred             ccCHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhc
Confidence            46889999999999998766   8999999995  555688999999999                              


Q ss_pred             --CCCCcccc--------------------cCCCCch---------------------HHHHHHHcC---CHHHHHHHHh
Q 043760           50 --QKPRIAEE--------------------LDSRKSS---------------------ALHIASQKG---YVGIVKALLQ   83 (345)
Q Consensus        50 --~~~~~~~~--------------------~d~~g~t---------------------pLh~A~~~g---~~~iv~~Ll~   83 (345)
                        .+.+. ..                    .+..|.+                     .||.-..++   +.+++++|++
T Consensus       289 ~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs  367 (672)
T PHA02730        289 TPYNVDM-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLD  367 (672)
T ss_pred             ccCCcch-HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHH
Confidence              56555 33                    5666654                     677777755   5899999999


Q ss_pred             hCCCCCcCCCCCCCcHHHHHHHcCc----HHHHHHHHhcCCCc-ccccccCCcc-------------------------H
Q 043760           84 VIPDKCSDTDVDGRNPLHLAAMRGH----IDVLEELVRAKPDA-ASTRLIWVGS-------------------------T  133 (345)
Q Consensus        84 ~~~~~~~~~d~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~-~~~~~~~~~~-------------------------~  133 (345)
                      +|+++ +.. ..|.||||+|+..++    .+++++|+++|++. ....+..+.+                         +
T Consensus       368 ~GAdI-N~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~iv  445 (672)
T PHA02730        368 NGATM-DKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVF  445 (672)
T ss_pred             CCCCC-CcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHH
Confidence            99999 554 799999999998875    89999999998741 1111111111                         4


Q ss_pred             HHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCC-CCCcHHHHHHhcCCCCchhhHHHHHHH
Q 043760          134 EVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTA-NGFTAWDILAQSKRDIKDWDTGELLRR  212 (345)
Q Consensus       134 ~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~-~g~T~L~~a~~~~~~~~~~~i~~~L~~  212 (345)
                      ++|++.+++   +|.+|..|+||||+|+..++.+++++|++. |+++|.+|. .|.||||+|+...  .++.+++++|++
T Consensus       446 k~LIs~GAD---INakD~~G~TPLh~Aa~~~~~eive~LI~~-GAdIN~~d~~~g~TaL~~Aa~~~--~~~~eIv~~LLs  519 (672)
T PHA02730        446 DILSKYMDD---IDMIDNENKTLLYYAVDVNNIQFARRLLEY-GASVNTTSRSIINTAIQKSSYRR--ENKTKLVDLLLS  519 (672)
T ss_pred             HHHHhcccc---hhccCCCCCCHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCcCCcCHHHHHHHhh--cCcHHHHHHHHH
Confidence            666776666   899999999999999999999999999999 899999997 5899999988621  246889999999


Q ss_pred             cccccc
Q 043760          213 AGAISA  218 (345)
Q Consensus       213 ~ga~~~  218 (345)
                      +|++..
T Consensus       520 ~ga~i~  525 (672)
T PHA02730        520 YHPTLE  525 (672)
T ss_pred             cCCCHH
Confidence            999763

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.93  E-value=2.5e-26  Score=227.21  Aligned_cols=214  Identities=28%  Similarity=0.332  Sum_probs=182.0

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcC-CHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKG-YVGIVKA   80 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g-~~~iv~~   80 (345)
                      .|.++.++.+++++.+...+   +..|.||||.|+..++.++++.+++++++. +.++..|.||+|+|+..| ..+++..
T Consensus       384 ~g~~~~v~Lll~~ga~~~~~---gk~gvTplh~aa~~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhvaa~~g~~~~~~~~  459 (1143)
T KOG4177|consen  384 SGRVSVVELLLEAGADPNSA---GKNGVTPLHVAAHYGNPRVVKLLLKRGASP-NAKAKLGYTPLHVAAKKGRYLQIARL  459 (1143)
T ss_pred             cCchhHHHhhhhccCCcccC---CCCCcceeeehhhccCcceEEEEeccCCCh-hhHhhcCCChhhhhhhcccHhhhhhh
Confidence            57889999999999885544   888999999999999999999999999998 889999999999999999 8999999


Q ss_pred             HHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCC---------cc---HHHHHHhcCCcccccc
Q 043760           81 LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWV---------GS---TEVLLENMGDFELLNA  148 (345)
Q Consensus        81 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~---------~~---~~~l~~~~~~~~~~~~  148 (345)
                      +++.+.++ +..-..|.||||+|+..|+.+++..|++.++.........-         .+   ...+++.+..   ++.
T Consensus       460 l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~---v~~  535 (1143)
T KOG4177|consen  460 LLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGAN---VDL  535 (1143)
T ss_pred             HhhcCCCc-chhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCc---eeh
Confidence            99999999 78899999999999999999999999998744322221110         11   4444555555   888


Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccchh
Q 043760          149 KDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNEL  228 (345)
Q Consensus       149 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~  228 (345)
                      ++..|+||||.||.+|+..+|++||++ |+|++++++.|+||||.|+.    .++.+|+++|+++||+++....+..+++
T Consensus       536 ~~~r~~TpLh~A~~~g~v~~VkfLLe~-gAdv~ak~~~G~TPLH~Aa~----~G~~~i~~LLlk~GA~vna~d~~g~TpL  610 (1143)
T KOG4177|consen  536 RTGRGYTPLHVAVHYGNVDLVKFLLEH-GADVNAKDKLGYTPLHQAAQ----QGHNDIAELLLKHGASVNAADLDGFTPL  610 (1143)
T ss_pred             hcccccchHHHHHhcCCchHHHHhhhC-CccccccCCCCCChhhHHHH----cChHHHHHHHHHcCCCCCcccccCcchh
Confidence            999999999999999999999999999 99999999999999999999    8899999999999999876444444443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=4.7e-25  Score=222.18  Aligned_cols=163  Identities=21%  Similarity=0.281  Sum_probs=151.2

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.+.++.|++.+.++...   |..|+||||+||..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|
T Consensus       535 ~g~~~~l~~Ll~~G~d~n~~---d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~~~g~~~iv~~L  610 (823)
T PLN03192        535 TGNAALLEELLKAKLDPDIG---DSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAISAKHHKIFRIL  610 (823)
T ss_pred             cCCHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            58999999999999886554   899999999999999999999999999998 89999999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      ++.+...   ....|.++||.|+..|+.+++++|+++|++                        +|.+|..|+||||+|+
T Consensus       611 ~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad------------------------in~~d~~G~TpLh~A~  663 (823)
T PLN03192        611 YHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLN------------------------VDSEDHQGATALQVAM  663 (823)
T ss_pred             HhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCC------------------------CCCCCCCCCCHHHHHH
Confidence            9887654   235677999999999999999999999998                        8999999999999999


Q ss_pred             HcCCHHHHHHhhhcCCccccccCCCC-CcHHHHHHh
Q 043760          162 ADKQIEAIKFLTTSTAIEVNAVTANG-FTAWDILAQ  196 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~~~~~~~~~n~~g-~T~L~~a~~  196 (345)
                      ..|+.+++++|+++ |++++..|..| .||++++..
T Consensus       664 ~~g~~~iv~~Ll~~-GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        664 AEDHVDMVRLLIMN-GADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             HCCcHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHH
Confidence            99999999999999 99999999998 899998755

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=5.8e-25  Score=207.66  Aligned_cols=215  Identities=12%  Similarity=-0.009  Sum_probs=170.1

Q ss_pred             CCCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHH-cCCHHHHHHHhcCCCCc-------------------------
Q 043760            1 MAGSVNTLLELRQQDPLILERPTVNCLSETPLHVAAL-LGHEDFAKEILPQKPRI-------------------------   54 (345)
Q Consensus         1 ~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~-~g~~~~v~~Ll~~~~~~-------------------------   54 (345)
                      ..|++|+|+.|+++|+++...   +..|.||||+|+. .|+.|++++|++.|++.                         
T Consensus        81 ~n~~lElvk~LI~~GAdvN~~---~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~  157 (631)
T PHA02792         81 DNIDIELLKLLISKGLEINSI---KNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDD  157 (631)
T ss_pred             hcccHHHHHHHHHcCCCcccc---cCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhh
Confidence            368999999999999997765   6679999999976 69999999999999762                         


Q ss_pred             ----------ccccCCCCchHHHHHHHcC-------CHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcC--cHHHHHHH
Q 043760           55 ----------AEELDSRKSSALHIASQKG-------YVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG--HIDVLEEL  115 (345)
Q Consensus        55 ----------~~~~d~~g~tpLh~A~~~g-------~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~L  115 (345)
                                .+..|..|.||||+|+.++       +.++++.|+++|+++ +..|..|.||||+|+.+.  ..|++++|
T Consensus       158 ~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L  236 (631)
T PHA02792        158 ELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDAL  236 (631)
T ss_pred             hccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHH
Confidence                      2356677999999999999       899999999999999 788999999999999999  89999999


Q ss_pred             HhcCCCcccccc---------c---C-------------Ccc--------------------------------------
Q 043760          116 VRAKPDAASTRL---------I---W-------------VGS--------------------------------------  132 (345)
Q Consensus       116 l~~~~~~~~~~~---------~---~-------------~~~--------------------------------------  132 (345)
                      ++..-+.+...+         .   .             +..                                      
T Consensus       237 ~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~  316 (631)
T PHA02792        237 FDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSY  316 (631)
T ss_pred             HhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhc
Confidence            874321111100         0   0             000                                      


Q ss_pred             --------------------------------------HHHHHHhcCCcccccccCCCC--CCHHHHHHHcCCH---HHH
Q 043760          133 --------------------------------------TEVLLENMGDFELLNAKDDYG--MTILLLAVADKQI---EAI  169 (345)
Q Consensus       133 --------------------------------------~~~l~~~~~~~~~~~~~d~~g--~t~Lh~A~~~g~~---~~v  169 (345)
                                                            ++.|++.+++   ++.+|..|  .||||+|+.....   +++
T Consensus       317 ~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GAD---IN~kD~~g~~~TpLh~A~~n~~~~v~~Il  393 (631)
T PHA02792        317 HTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNV---VVEDDDNIINIMPLFPTLSIHESDVLSIL  393 (631)
T ss_pred             CCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCc---hhhhcCCCCChhHHHHHHHhccHhHHHHH
Confidence                                                  5666666665   77777664  6899987776654   357


Q ss_pred             HHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccch
Q 043760          170 KFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNE  227 (345)
Q Consensus       170 ~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~  227 (345)
                      ++|+++ |+++|.+|..|.||||+|+.    .++.+++++|+++|++.+........+
T Consensus       394 klLIs~-GADIN~kD~~G~TPLh~Aa~----~~n~eivelLLs~GADIN~kD~~G~Tp  446 (631)
T PHA02792        394 KLCKPY-IDDINKIDKHGRSILYYCIE----SHSVSLVEWLIDNGADINITTKYGSTC  446 (631)
T ss_pred             HHHHhc-CCccccccccCcchHHHHHH----cCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            888888 88999999999999999998    778899999999999886544444333

>PHA02798 ankyrin-like protein; Provisional

Probab=99.92  E-value=2.1e-24  Score=206.33  Aligned_cols=184  Identities=21%  Similarity=0.229  Sum_probs=159.8

Q ss_pred             CHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHc--CCHHHHHHHhcCCCCcccccCCCCchHHHHHHHc-----CCHH
Q 043760            4 SVNTLLELRQQDPLILERPTVNCLSETPLHVAALL--GHEDFAKEILPQKPRIAEELDSRKSSALHIASQK-----GYVG   76 (345)
Q Consensus         4 ~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~--g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-----g~~~   76 (345)
                      +++.|+.|++.+.. .+    ...|.|+++.+...  ++.+++++|+++|+++ +.+|..|.||||.|+..     ++.+
T Consensus        17 ~~~~v~~ll~~~~~-~~----~~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpL~~~~~n~~~~~~~~~   90 (489)
T PHA02798         17 KLSTVKLLIKSCNP-NE----IVNEYSIFQKYLQRDSPSTDIVKLFINLGANV-NGLDNEYSTPLCTILSNIKDYKHMLD   90 (489)
T ss_pred             cHHHHHHHHhcCCh-hh----hcccchHHHHHHhCCCCCHHHHHHHHHCCCCC-CCCCCCCCChHHHHHHhHHhHHhHHH
Confidence            46799999986422 22    24577887755544  5899999999999998 89999999999999864     6789


Q ss_pred             HHHHHHhhCCCCCcCCCCCCCcHHHHHHHcC---cHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCC
Q 043760           77 IVKALLQVIPDKCSDTDVDGRNPLHLAAMRG---HIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYG  153 (345)
Q Consensus        77 iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g  153 (345)
                      ++++|+++|+++ +..|..|.||||+|+..+   +.+++++|+++|++                        ++.+|..|
T Consensus        91 iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad------------------------vn~~d~~g  145 (489)
T PHA02798         91 IVKILIENGADI-NKKNSDGETPLYCLLSNGYINNLEILLFMIENGAD------------------------TTLLDKDG  145 (489)
T ss_pred             HHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCC------------------------ccccCCCC
Confidence            999999999999 899999999999999986   78999999999999                        89999999


Q ss_pred             CCHHHHHHHcCC---HHHHHHhhhcCCccccccC-CCCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          154 MTILLLAVADKQ---IEAIKFLTTSTAIEVNAVT-ANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       154 ~t~Lh~A~~~g~---~~~v~~Ll~~~~~~~~~~n-~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      .||||+|++.++   .+++++|++. |++++.++ ..|.||||.+........+.+++++|+++|++...
T Consensus       146 ~tpL~~a~~~~~~~~~~vv~~Ll~~-gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~  214 (489)
T PHA02798        146 FTMLQVYLQSNHHIDIEIIKLLLEK-GVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINK  214 (489)
T ss_pred             CcHHHHHHHcCCcchHHHHHHHHHh-CCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCccc
Confidence            999999999998   9999999999 99999985 57899999988755456689999999999998765

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=4.7e-25  Score=189.50  Aligned_cols=160  Identities=21%  Similarity=0.279  Sum_probs=146.1

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHc-----CCHHHHHHHHhhCCCCCcCCCCCCCc
Q 043760           24 VNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQK-----GYVGIVKALLQVIPDKCSDTDVDGRN   98 (345)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-----g~~~iv~~Ll~~~~~~~~~~d~~g~t   98 (345)
                      .|.+|+|+||||+.+++.++|+.||+.+..-++.+|.-|+||+++++..     .+.++|..|...| +++-.....|+|
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQT  342 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQT  342 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcch
Confidence            3788999999999999999999999999877799999999999999864     4578899888876 443455678999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCc
Q 043760           99 PLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAI  178 (345)
Q Consensus        99 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  178 (345)
                      +|++|+.+|+.++|+.||..|++                        +|.+|.+|.|+|++|+++||.+|+++||..+++
T Consensus       343 ALMLAVSHGr~d~vk~LLacgAd------------------------VNiQDdDGSTALMCA~EHGhkEivklLLA~p~c  398 (452)
T KOG0514|consen  343 ALMLAVSHGRVDMVKALLACGAD------------------------VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSC  398 (452)
T ss_pred             hhhhhhhcCcHHHHHHHHHccCC------------------------CccccCCccHHHhhhhhhChHHHHHHHhccCcc
Confidence            99999999999999999999999                        999999999999999999999999999999999


Q ss_pred             cccccCCCCCcHHHHHHhcCCCCchhhHHHHHHH
Q 043760          179 EVNAVTANGFTAWDILAQSKRDIKDWDTGELLRR  212 (345)
Q Consensus       179 ~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~  212 (345)
                      |+...|.+|-|+|.+|..    .++.+|.-+|..
T Consensus       399 d~sLtD~DgSTAl~IAle----agh~eIa~mlYa  428 (452)
T KOG0514|consen  399 DISLTDVDGSTALSIALE----AGHREIAVMLYA  428 (452)
T ss_pred             cceeecCCCchhhhhHHh----cCchHHHHHHHH
Confidence            999999999999999999    888898877764

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=2e-23  Score=199.34  Aligned_cols=201  Identities=11%  Similarity=0.001  Sum_probs=152.9

Q ss_pred             HHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcC---CHHHHHHHhcCCCCcccccCCCCchHHHHHHHcC--CHHHHHH
Q 043760            6 NTLLELRQQDPLILERPTVNCLSETPLHVAALLG---HEDFAKEILPQKPRIAEELDSRKSSALHIASQKG--YVGIVKA   80 (345)
Q Consensus         6 ~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~   80 (345)
                      ..++..++....+..  ..|..|+||||+|+..|   +.+++++|+++|+++ +.+|..|.||||+|+..+  +.+++++
T Consensus        21 ~~~~~~~~~~~~in~--~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi-n~kD~~G~TPLh~Aa~~~~~~~eIv~~   97 (672)
T PHA02730         21 KKIKLEIETCHNLSK--HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER-LCRNNEGLTPLGVYSKRKYVKSQIVHL   97 (672)
T ss_pred             HHHHHHHHHhcchhh--hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC-cccCCCCCChHHHHHHcCCCcHHHHHH
Confidence            345666676656552  23788999999999997   599999999999998 899999999999999977  7999999


Q ss_pred             HHhhCCCC-CcCCCCCCCcHHHHHHH--cCcHHHHHHHHh-cCCCccccccc----CCcc-------------HHHHHHh
Q 043760           81 LLQVIPDK-CSDTDVDGRNPLHLAAM--RGHIDVLEELVR-AKPDAASTRLI----WVGS-------------TEVLLEN  139 (345)
Q Consensus        81 Ll~~~~~~-~~~~d~~g~tpLh~A~~--~g~~~iv~~Ll~-~~~~~~~~~~~----~~~~-------------~~~l~~~  139 (345)
                      |++.|++. .+..+..+.+|||.++.  .++.+++++|+. .+.++......    .+..             +++|++.
T Consensus        98 Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~  177 (672)
T PHA02730         98 LISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKS  177 (672)
T ss_pred             HHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHc
Confidence            99996543 14567778999999888  889999999996 55554433221    1211             8888888


Q ss_pred             cCCcc--c--ccccCCCCC-CHHHHH------HHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHH
Q 043760          140 MGDFE--L--LNAKDDYGM-TILLLA------VADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGE  208 (345)
Q Consensus       140 ~~~~~--~--~~~~d~~g~-t~Lh~A------~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~  208 (345)
                      ++...  .  .+..+..+. |.||+.      ..+++.+++++|+++ |+++|.+|..|+||||++....  .++.|+++
T Consensus       178 g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~-GadIN~kd~~G~TpLh~~~~~~--~~~~eiv~  254 (672)
T PHA02730        178 ECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDN-NVSIHGRDEGGSLPIQYYWSCS--TIDIEIVK  254 (672)
T ss_pred             CCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcC--cccHHHHH
Confidence            87721  0  012444455 445533      356789999999999 9999999999999999733311  45589999


Q ss_pred             HHHH
Q 043760          209 LLRR  212 (345)
Q Consensus       209 ~L~~  212 (345)
                      +|++
T Consensus       255 ~Li~  258 (672)
T PHA02730        255 LLIK  258 (672)
T ss_pred             HHHh
Confidence            9999

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.91  E-value=3.6e-24  Score=212.04  Aligned_cols=180  Identities=26%  Similarity=0.280  Sum_probs=162.4

Q ss_pred             CHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHh
Q 043760            4 SVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ   83 (345)
Q Consensus         4 ~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~   83 (345)
                      ..+....+++.+.+....   ...|.||||+|+..||.++++.|++.++.. +.....|.++||+|...+...+++.+++
T Consensus       453 ~~~~~~~l~~~g~~~n~~---s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lhla~~~~~v~~~~~l~~  528 (1143)
T KOG4177|consen  453 YLQIARLLLQYGADPNAV---SKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLHLAADEDTVKVAKILLE  528 (1143)
T ss_pred             HhhhhhhHhhcCCCcchh---ccccCcchhhhhccCCchHHHHhhhcCCcc-CccchhccchhhhhhhhhhHHHHHHHhh
Confidence            345555666666664443   778999999999999999999999888666 7778889999999999999999999999


Q ss_pred             hCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHc
Q 043760           84 VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVAD  163 (345)
Q Consensus        84 ~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~  163 (345)
                      +|+.+ +.++..|.||||.|+.+|+.++|++|++++++                        ++.+|+.|+||||.||..
T Consensus       529 ~ga~v-~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd------------------------v~ak~~~G~TPLH~Aa~~  583 (1143)
T KOG4177|consen  529 HGANV-DLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD------------------------VNAKDKLGYTPLHQAAQQ  583 (1143)
T ss_pred             cCCce-ehhcccccchHHHHHhcCCchHHHHhhhCCcc------------------------ccccCCCCCChhhHHHHc
Confidence            99999 89999999999999999999999999999999                        899999999999999999


Q ss_pred             CCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccc
Q 043760          164 KQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAIS  217 (345)
Q Consensus       164 g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~  217 (345)
                      |+.+|+++|+++ |+++|..|.+|.|||++|..    .++++++++|+..|++.
T Consensus       584 G~~~i~~LLlk~-GA~vna~d~~g~TpL~iA~~----lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  584 GHNDIAELLLKH-GASVNAADLDGFTPLHIAVR----LGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             ChHHHHHHHHHc-CCCCCcccccCcchhHHHHH----hcccchhhHHHhccCcc
Confidence            999999999999 99999999999999999999    89999999999999983

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=1.2e-23  Score=171.81  Aligned_cols=137  Identities=15%  Similarity=0.142  Sum_probs=110.4

Q ss_pred             CCCCCcHHHHHHHcCCH----HHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHH---HHHHHhhCCCCCcCCC-CCC
Q 043760           25 NCLSETPLHVAALLGHE----DFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGI---VKALLQVIPDKCSDTD-VDG   96 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i---v~~Ll~~~~~~~~~~d-~~g   96 (345)
                      +.++.++||.||+.|+.    +++++|++.+..+ +.+|..|+||||+|+..|+.++   +++|++.|+++ +.++ ..|
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~g   94 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGTG   94 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCCC
Confidence            56678888888888887    5556677777765 7778888888888888887543   78888888888 6666 478


Q ss_pred             CcHHHHHHHcCcHHHHHHHHh-cCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhc
Q 043760           97 RNPLHLAAMRGHIDVLEELVR-AKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTS  175 (345)
Q Consensus        97 ~tpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  175 (345)
                      .||||+|+..|+.+++++|+. .+++                        ++.+|..|.||||+|+..++.+++++|+++
T Consensus        95 ~TpLh~A~~~g~~~iv~~Ll~~~gad------------------------~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~  150 (166)
T PHA02743         95 NTLLHIAASTKNYELAEWLCRQLGVN------------------------LGAINYQHETAYHIAYKMRDRRMMEILRAN  150 (166)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhccCCC------------------------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            888888888888888888885 6776                        777888888888888888888888888888


Q ss_pred             CCccccccCCCCC
Q 043760          176 TAIEVNAVTANGF  188 (345)
Q Consensus       176 ~~~~~~~~n~~g~  188 (345)
                       |++++.++..|.
T Consensus       151 -ga~~~~~~~~~~  162 (166)
T PHA02743        151 -GAVCDDPLSIGL  162 (166)
T ss_pred             -CCCCCCcccCCc
Confidence             788888887764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.9e-23  Score=190.79  Aligned_cols=188  Identities=13%  Similarity=-0.009  Sum_probs=156.1

Q ss_pred             HHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCccc------ccCCCCchHHHHHHH--cCCHHHHHH
Q 043760            9 LELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAE------ELDSRKSSALHIASQ--KGYVGIVKA   80 (345)
Q Consensus         9 ~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~------~~d~~g~tpLh~A~~--~g~~~iv~~   80 (345)
                      ++++.++.++...   ..+|     +|+..+..++++.|++++.++ +      .++..++|+||+++.  .|+.++|++
T Consensus        66 ~~~~~~~~~i~~~---~~~~-----~~~~~~~k~~~~~l~s~~~~~-~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~  136 (437)
T PHA02795         66 DYFRIHRDNIDQY---IVDR-----LFAYITYKDIISALVSKNYME-DIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDF  136 (437)
T ss_pred             HHHHHcCcchhhh---hhhh-----HHhhcchHHHHHHHHhccccc-chhhhhhhccccccHHHHHHHHhcCCCHHHHHH
Confidence            5667777776554   3334     999999999999999999987 5      578889999999999  899999999


Q ss_pred             HHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHH
Q 043760           81 LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLA  160 (345)
Q Consensus        81 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A  160 (345)
                      |+++|+++ +.  .++.||||.|+..++.+++++|+++|++.....                  ..+..+..|.|++|.|
T Consensus       137 LI~~GADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~------------------~~~l~~~~~~t~l~~a  195 (437)
T PHA02795        137 MVDHGAVI-YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDV------------------KLDLYKIIQYTRGFLV  195 (437)
T ss_pred             HHHCCCCC-CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccc------------------cchhhhhhccchhHHH
Confidence            99999999 55  355899999999999999999999997531110                  0122234588999999


Q ss_pred             HHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccchhhhc
Q 043760          161 VADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELAVT  231 (345)
Q Consensus       161 ~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  231 (345)
                      +..++.+++++|+++ |+++|.+|..|.||||+|+.    .++.+++++|++.||+.+.....+.+++...
T Consensus       196 ~~~~~~eIve~LIs~-GADIN~kD~~G~TpLh~Aa~----~g~~eiVelLL~~GAdIN~~d~~G~TpLh~A  261 (437)
T PHA02795        196 DEPTVLEIYKLCIPY-IEDINQLDAGGRTLLYRAIY----AGYIDLVSWLLENGANVNAVMSNGYTCLDVA  261 (437)
T ss_pred             HhcCHHHHHHHHHhC-cCCcCcCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            999999999999999 99999999999999999999    8899999999999999877555555554433

>PHA02741 hypothetical protein; Provisional

Probab=99.91  E-value=3.1e-23  Score=170.02  Aligned_cols=132  Identities=21%  Similarity=0.315  Sum_probs=88.3

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhh------CCCCCcCCCCCCCcHHHHHHHcCc----HHHHHHHHhcCCCcccc
Q 043760           56 EELDSRKSSALHIASQKGYVGIVKALLQV------IPDKCSDTDVDGRNPLHLAAMRGH----IDVLEELVRAKPDAAST  125 (345)
Q Consensus        56 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~------~~~~~~~~d~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~~~~  125 (345)
                      +.+|..|.||||+|++.|+.++++.|+..      |+++ +..|..|.||||+|+..|+    .+++++|++.+++    
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad----   89 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD----   89 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC----
Confidence            34456666777777777777766666432      3444 5666677777777777766    4666777776666    


Q ss_pred             cccCCccHHHHHHhcCCcccccccCC-CCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchh
Q 043760          126 RLIWVGSTEVLLENMGDFELLNAKDD-YGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDW  204 (345)
Q Consensus       126 ~~~~~~~~~~l~~~~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~  204 (345)
                                          ++.++. .|+||||+|+..++.+++++|++..+++++.+|.+|+||||+|..    .++.
T Consensus        90 --------------------in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~----~~~~  145 (169)
T PHA02741         90 --------------------INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAID----NEDV  145 (169)
T ss_pred             --------------------CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHH----CCCH
Confidence                                666664 677777777777777777777764466777777777777777777    5666


Q ss_pred             hHHHHHHHcccc
Q 043760          205 DTGELLRRAGAI  216 (345)
Q Consensus       205 ~i~~~L~~~ga~  216 (345)
                      +++++|++.++.
T Consensus       146 ~iv~~L~~~~~~  157 (169)
T PHA02741        146 AMMQILREIVAT  157 (169)
T ss_pred             HHHHHHHHHHHH
Confidence            777777766654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=5.2e-24  Score=171.27  Aligned_cols=181  Identities=24%  Similarity=0.238  Sum_probs=117.8

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCc---------------------------
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRI---------------------------   54 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~---------------------------   54 (345)
                      +|+.+.+.....-+++-...  .+++|+.++|.|+-.|+.+.+..++.++...                           
T Consensus        72 s~nsd~~v~s~~~~~~~~~~--t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~  149 (296)
T KOG0502|consen   72 SGNSDVAVQSAQLDPDAIDE--TDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLV  149 (296)
T ss_pred             cCCcHHHHHhhccCCCCCCC--CCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHh
Confidence            34555555555544443322  2445666666665555555554444443322                           


Q ss_pred             ---ccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCc
Q 043760           55 ---AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVG  131 (345)
Q Consensus        55 ---~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~  131 (345)
                         ++..|+.|.|||.+|+.+|++.+|++||+.|+++ ....+...++|.+|++.|..+||++|+.++++          
T Consensus       150 ~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~r~vd----------  218 (296)
T KOG0502|consen  150 NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLTREVD----------  218 (296)
T ss_pred             hccccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC----------
Confidence               3566777777777777777777777777777776 56666667777777777777777777777766          


Q ss_pred             cHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHH
Q 043760          132 STEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLR  211 (345)
Q Consensus       132 ~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~  211 (345)
                                    +|..|.+|-|||.+|++.++.+|++.||.. |++++..+..|++++++|..    .++. +++..+
T Consensus       219 --------------VNvyDwNGgTpLlyAvrgnhvkcve~Ll~s-GAd~t~e~dsGy~~mdlAVa----lGyr-~Vqqvi  278 (296)
T KOG0502|consen  219 --------------VNVYDWNGGTPLLYAVRGNHVKCVESLLNS-GADVTQEDDSGYWIMDLAVA----LGYR-IVQQVI  278 (296)
T ss_pred             --------------cceeccCCCceeeeeecCChHHHHHHHHhc-CCCcccccccCCcHHHHHHH----hhhH-HHHHHH
Confidence                          777777777888888777777888877777 77777777777788777777    4444 555555


Q ss_pred             Hccc
Q 043760          212 RAGA  215 (345)
Q Consensus       212 ~~ga  215 (345)
                      +.-+
T Consensus       279 e~h~  282 (296)
T KOG0502|consen  279 EKHA  282 (296)
T ss_pred             HHHH
Confidence            4444

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=3.9e-23  Score=168.76  Aligned_cols=140  Identities=22%  Similarity=0.291  Sum_probs=123.2

Q ss_pred             CCCcccccCCCCchHHHHHHHcCCH----HHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHH---HHHHHHhcCCCcc
Q 043760           51 KPRIAEELDSRKSSALHIASQKGYV----GIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHID---VLEELVRAKPDAA  123 (345)
Q Consensus        51 ~~~~~~~~d~~g~tpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~---iv~~Ll~~~~~~~  123 (345)
                      +.++ ...+..+.++||.||+.|+.    +++++|++.++.+ +..|..|+||||+|+..|+.+   ++++|++.|++  
T Consensus        10 ~~~~-~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad--   85 (166)
T PHA02743         10 NLGA-VEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD--   85 (166)
T ss_pred             chHH-hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC--
Confidence            3444 55677888999999999998    6667788888887 788999999999999998865   48999999998  


Q ss_pred             cccccCCccHHHHHHhcCCcccccccC-CCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCc
Q 043760          124 STRLIWVGSTEVLLENMGDFELLNAKD-DYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIK  202 (345)
Q Consensus       124 ~~~~~~~~~~~~l~~~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~  202 (345)
                                            ++.+| ..|+||||+|+..|+.+++++|+...|++++.+|..|.||||+|+.    .+
T Consensus        86 ----------------------in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~----~~  139 (166)
T PHA02743         86 ----------------------INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYK----MR  139 (166)
T ss_pred             ----------------------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHH----cC
Confidence                                  88888 5899999999999999999999964499999999999999999999    78


Q ss_pred             hhhHHHHHHHcccccccc
Q 043760          203 DWDTGELLRRAGAISAKD  220 (345)
Q Consensus       203 ~~~i~~~L~~~ga~~~~~  220 (345)
                      +.+++++|++.|++...+
T Consensus       140 ~~~iv~~Ll~~ga~~~~~  157 (166)
T PHA02743        140 DRRMMEILRANGAVCDDP  157 (166)
T ss_pred             CHHHHHHHHHcCCCCCCc
Confidence            899999999999988653

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=8.2e-23  Score=167.54  Aligned_cols=125  Identities=25%  Similarity=0.314  Sum_probs=113.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcC------CCCcccccCCCCchHHHHHHHcCC----HHHHHHHHhhCCCCCcCCCC
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQ------KPRIAEELDSRKSSALHIASQKGY----VGIVKALLQVIPDKCSDTDV   94 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~------~~~~~~~~d~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~d~   94 (345)
                      |..|.||||+|+..|+.++++.|+..      +.++ +.+|..|.||||+|+..|+    .+++++|++.|+++ +.++.
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~~   95 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQEM   95 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCCc
Confidence            77899999999999999999998542      3555 8899999999999999999    58999999999999 67774


Q ss_pred             -CCCcHHHHHHHcCcHHHHHHHHh-cCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHh
Q 043760           95 -DGRNPLHLAAMRGHIDVLEELVR-AKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFL  172 (345)
Q Consensus        95 -~g~tpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~L  172 (345)
                       .|.||||+|+..++.+++++|+. .+.+                        ++.+|..|.||||+|+..++.+++++|
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~------------------------~~~~n~~g~tpL~~A~~~~~~~iv~~L  151 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGID------------------------LHFCNADNKSPFELAIDNEDVAMMQIL  151 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCC------------------------CCcCCCCCCCHHHHHHHCCCHHHHHHH
Confidence             89999999999999999999997 4777                        888999999999999999999999999


Q ss_pred             hhc
Q 043760          173 TTS  175 (345)
Q Consensus       173 l~~  175 (345)
                      ++.
T Consensus       152 ~~~  154 (169)
T PHA02741        152 REI  154 (169)
T ss_pred             HHH
Confidence            987

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=2.2e-23  Score=187.93  Aligned_cols=209  Identities=23%  Similarity=0.233  Sum_probs=150.0

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      +|+.+.|..|+..+..+...   |.+|.|+||-+|.-.+.+||++|++.++++ +..|..|+||||.|+..||..++++|
T Consensus        50 ~~d~~ev~~ll~~ga~~~~~---n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~i~~~l  125 (527)
T KOG0505|consen   50 RGDLEEVRKLLNRGASPNLC---NVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLNIVEYL  125 (527)
T ss_pred             cccHHHHHHHhccCCCcccc---CCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHHHHHHH
Confidence            57777777777777665333   777777777777777777777777777777 77777777777777777777777777


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhc-CCCcccccccCCcc-HHHHHHhcCCcccccccCCCCCCHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRA-KPDAASTRLIWVGS-TEVLLENMGDFELLNAKDDYGMTILLL  159 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~d~~g~t~Lh~  159 (345)
                      +++|+++ ...+..|..|+.++......++...-... +.+....+.....+ +.-+.++...+...+..+..|.|.||+
T Consensus       126 i~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHv  204 (527)
T KOG0505|consen  126 IQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHV  204 (527)
T ss_pred             HHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHH
Confidence            7777777 56666777777666544443333333322 11111000000011 333333444444477777779999999


Q ss_pred             HHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccc
Q 043760          160 AVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKD  220 (345)
Q Consensus       160 A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  220 (345)
                      |+.+|+.++.++|++. |.+++.+|.+|+||||.|+.    .+..+.+++|+++|++....
T Consensus       205 Aaa~Gy~e~~~lLl~a-g~~~~~~D~dgWtPlHAAA~----Wg~~~~~elL~~~ga~~d~~  260 (527)
T KOG0505|consen  205 AAANGYTEVAALLLQA-GYSVNIKDYDGWTPLHAAAH----WGQEDACELLVEHGADMDAK  260 (527)
T ss_pred             HHhhhHHHHHHHHHHh-ccCcccccccCCCcccHHHH----hhhHhHHHHHHHhhcccchh
Confidence            9999999999999999 88999999999999999999    99999999999999987553

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.89  E-value=8.2e-23  Score=158.51  Aligned_cols=141  Identities=25%  Similarity=0.272  Sum_probs=133.3

Q ss_pred             HHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHH
Q 043760           31 PLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHID  110 (345)
Q Consensus        31 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  110 (345)
                      -+.+|+..+....|+.|++..++.++.+|.+|.||||-|+.+||++||+.|+..|++. ..+...|+||||-||...+.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchh
Confidence            4779999999999999999999999999999999999999999999999999999999 889999999999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCC-HHHHHHhhhcCCccccccCCCCCc
Q 043760          111 VLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQ-IEAIKFLTTSTAIEVNAVTANGFT  189 (345)
Q Consensus       111 iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~~v~~Ll~~~~~~~~~~n~~g~T  189 (345)
                      ++..|++.|++                        +|+......||||+||...+ ...+++|+..+++++..+++.+.|
T Consensus       145 va~~LLqhgaD------------------------VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eet  200 (228)
T KOG0512|consen  145 VAGRLLQHGAD------------------------VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEET  200 (228)
T ss_pred             HHHHHHhccCc------------------------ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccch
Confidence            99999999999                        89999999999999998765 567888888889999999999999


Q ss_pred             HHHHHHh
Q 043760          190 AWDILAQ  196 (345)
Q Consensus       190 ~L~~a~~  196 (345)
                      |+++|-+
T Consensus       201 a~~iARR  207 (228)
T KOG0512|consen  201 AFDIARR  207 (228)
T ss_pred             HHHHHHH
Confidence            9999987

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=3.2e-23  Score=193.14  Aligned_cols=200  Identities=22%  Similarity=0.196  Sum_probs=127.7

Q ss_pred             CCCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHH
Q 043760            1 MAGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKA   80 (345)
Q Consensus         1 ~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~   80 (345)
                      |+|+.++++.|++..+.+.-.   +..|.+|||+|++.|+.++++.|+.++..+ +..+..|.||||.|+.+||.+++.+
T Consensus        58 Lng~~~is~llle~ea~ldl~---d~kg~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhgh~dvv~~  133 (854)
T KOG0507|consen   58 LNGQNQISKLLLDYEALLDLC---DTKGILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHGHLEVVFY  133 (854)
T ss_pred             hcCchHHHHHHhcchhhhhhh---hccCcceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhhhcchHHHHH
Confidence            345555555555555443322   455555666666666666666555555333 5555555666666666666666666


Q ss_pred             HHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHH
Q 043760           81 LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLA  160 (345)
Q Consensus        81 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A  160 (345)
                      |+++++++ .++|+.+.|+|.+|++.|..++++.|+...-...           .+...+     -..++..+-+|||+|
T Consensus       134 Ll~~~adp-~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~-----------~~~~~~-----~~~~~~~~~~plHla  196 (854)
T KOG0507|consen  134 LLKKNADP-FIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQ-----------SSLRVG-----DIKRPFPAIYPLHLA  196 (854)
T ss_pred             HHhcCCCc-cccCcccccHHHHHHHhhhhHHHHHHhhhccchh-----------hcccCC-----CCCCCCCCcCCcchh
Confidence            66666555 4555555566666666666666655555411100           000000     234566788999999


Q ss_pred             HHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccch
Q 043760          161 VADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNE  227 (345)
Q Consensus       161 ~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~  227 (345)
                      +++|+.++++.|++. |+++|...++| |+||.|+.    .+..+++.+|++.|.......++....
T Consensus       197 akngh~~~~~~ll~a-g~din~~t~~g-talheaal----cgk~evvr~ll~~gin~h~~n~~~qta  257 (854)
T KOG0507|consen  197 AKNGHVECMQALLEA-GFDINYTTEDG-TALHEAAL----CGKAEVVRFLLEIGINTHIKNQHGQTA  257 (854)
T ss_pred             hhcchHHHHHHHHhc-CCCcccccccc-hhhhhHhh----cCcchhhhHHHhhccccccccccchHH
Confidence            999999999999999 99999998776 99999999    788999999999999775544444433

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.89  E-value=3.4e-23  Score=166.58  Aligned_cols=173  Identities=28%  Similarity=0.267  Sum_probs=144.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCC------------------
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP------------------   86 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~------------------   86 (345)
                      +..|..-+-.+.+.|+.+++..+..-.++.....+.+|++++|.++-.|+.+.++.++.++.                  
T Consensus        59 ~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVh  138 (296)
T KOG0502|consen   59 NALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVH  138 (296)
T ss_pred             HhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHH
Confidence            55677777888899999998888887777667777788888888877766655544443322                  


Q ss_pred             ------------CCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCC
Q 043760           87 ------------DKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM  154 (345)
Q Consensus        87 ------------~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~  154 (345)
                                  ...+..|+.|.|||.||+..|+.++|++|++.|++                        ++.......
T Consensus       139 ql~L~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd------------------------p~~lgk~re  194 (296)
T KOG0502|consen  139 QLHLDVVDLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD------------------------PDALGKYRE  194 (296)
T ss_pred             HHHHHHHHHHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCC------------------------hhhhhhhhh
Confidence                        22367899999999999999999999999999999                        666777888


Q ss_pred             CHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccc
Q 043760          155 TILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVN  226 (345)
Q Consensus       155 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~  226 (345)
                      ++|.+|+..|..+||++||.+ ++|+|.-|.+|-|||-+|++    .++.+|++.|+..||++...-.....
T Consensus       195 sALsLAt~ggytdiV~lLL~r-~vdVNvyDwNGgTpLlyAvr----gnhvkcve~Ll~sGAd~t~e~dsGy~  261 (296)
T KOG0502|consen  195 SALSLATRGGYTDIVELLLTR-EVDVNVYDWNGGTPLLYAVR----GNHVKCVESLLNSGADVTQEDDSGYW  261 (296)
T ss_pred             hhHhHHhcCChHHHHHHHHhc-CCCcceeccCCCceeeeeec----CChHHHHHHHHhcCCCcccccccCCc
Confidence            999999999999999999999 99999999999999999999    88999999999999998765444433

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.89  E-value=8.1e-23  Score=165.19  Aligned_cols=132  Identities=21%  Similarity=0.259  Sum_probs=109.5

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhhCC--C----CCcCCCCCCCcHHHHHHHcCcH---HHHHHHHhcCCCccccc
Q 043760           56 EELDSRKSSALHIASQKGYVGIVKALLQVIP--D----KCSDTDVDGRNPLHLAAMRGHI---DVLEELVRAKPDAASTR  126 (345)
Q Consensus        56 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~--~----~~~~~d~~g~tpLh~A~~~g~~---~iv~~Ll~~~~~~~~~~  126 (345)
                      +.+|..|.||||+|++.|+.  +.++...+.  +    .....|..|.||||+|+..|+.   +++++|++.|++     
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-----   83 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-----   83 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-----
Confidence            55677888888888888873  333332221  1    1134688999999999999986   468899999988     


Q ss_pred             ccCCccHHHHHHhcCCcccccccC-CCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhh
Q 043760          127 LIWVGSTEVLLENMGDFELLNAKD-DYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWD  205 (345)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~  205 (345)
                                         ++.+| ..|+||||+|+..|+.+++++|++..+++++.+|..|+||||+|+.    .++.+
T Consensus        84 -------------------in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~----~~~~~  140 (154)
T PHA02736         84 -------------------INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACE----RHDAK  140 (154)
T ss_pred             -------------------ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHH----cCCHH
Confidence                               88888 5899999999999999999999986689999999999999999999    78899


Q ss_pred             HHHHHHHccccc
Q 043760          206 TGELLRRAGAIS  217 (345)
Q Consensus       206 i~~~L~~~ga~~  217 (345)
                      ++++|++.|++.
T Consensus       141 i~~~Ll~~ga~~  152 (154)
T PHA02736        141 MMNILRAKGAQC  152 (154)
T ss_pred             HHHHHHHcCCCC
Confidence            999999999865

>PHA02792 ankyrin-like protein; Provisional

Probab=99.88  E-value=2.1e-21  Score=183.64  Aligned_cols=209  Identities=13%  Similarity=0.048  Sum_probs=162.5

Q ss_pred             CCCHHHHHHHHhcCCcccc---------------------------------CCCCCCCCCcHHHHHHHcC-------CH
Q 043760            2 AGSVNTLLELRQQDPLILE---------------------------------RPTVNCLSETPLHVAALLG-------HE   41 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~---------------------------------~~~~~~~g~t~Lh~Aa~~g-------~~   41 (345)
                      .|+.|+++.|++.|++...                                 .+..+..|.||||+|+..+       +.
T Consensus       116 ~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~  195 (631)
T PHA02792        116 NPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSL  195 (631)
T ss_pred             CCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCH
Confidence            5899999999999976321                                 0123566999999999999       89


Q ss_pred             HHHHHHhcCCCCcccccCCCCchHHHHHHHcC--CHHHHHHHHh------------------------------------
Q 043760           42 DFAKEILPQKPRIAEELDSRKSSALHIASQKG--YVGIVKALLQ------------------------------------   83 (345)
Q Consensus        42 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~------------------------------------   83 (345)
                      ++++.|+++|+++ +..|..|.||||+|+.+.  ..|++++|++                                    
T Consensus       196 ~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll  274 (631)
T PHA02792        196 DVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLL  274 (631)
T ss_pred             HHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHH
Confidence            9999999999998 888999999999999987  5666666653                                    


Q ss_pred             -------------------------------------------------------hCCCCCcCCCCCCCcHHHHHHHcCc
Q 043760           84 -------------------------------------------------------VIPDKCSDTDVDGRNPLHLAAMRGH  108 (345)
Q Consensus        84 -------------------------------------------------------~~~~~~~~~d~~g~tpLh~A~~~g~  108 (345)
                                                                             +|++..   ...+..+++.|+..|+
T Consensus       275 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn  351 (631)
T PHA02792        275 SGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRD  351 (631)
T ss_pred             hCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCC
Confidence                                                                   222210   1235567899999999


Q ss_pred             HHHHHHHHhcCCCcccccccC-Ccc----------------HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHH
Q 043760          109 IDVLEELVRAKPDAASTRLIW-VGS----------------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKF  171 (345)
Q Consensus       109 ~~iv~~Ll~~~~~~~~~~~~~-~~~----------------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~  171 (345)
                      .+++++|+++|++........ +.+                ++.+++.+++   +|.+|..|.||||+|+..++.+++++
T Consensus       352 ~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD---IN~kD~~G~TPLh~Aa~~~n~eivel  428 (631)
T PHA02792        352 PKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD---INKIDKHGRSILYYCIESHSVSLVEW  428 (631)
T ss_pred             HHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc---cccccccCcchHHHHHHcCCHHHHHH
Confidence            999999999999975443221 111                3444555555   99999999999999999999999999


Q ss_pred             hhhcCCccccccCCCCCcHHHHHHhc--CCC----CchhhHHHHHHHcccccc
Q 043760          172 LTTSTAIEVNAVTANGFTAWDILAQS--KRD----IKDWDTGELLRRAGAISA  218 (345)
Q Consensus       172 Ll~~~~~~~~~~n~~g~T~L~~a~~~--~~~----~~~~~i~~~L~~~ga~~~  218 (345)
                      |+++ |++++.+|..|+||||+|...  +..    ....+++++|++.|.+..
T Consensus       429 LLs~-GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        429 LIDN-GADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             HHHC-CCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            9999 999999999999999998751  110    123567899998887653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=9.6e-22  Score=172.92  Aligned_cols=153  Identities=18%  Similarity=0.128  Sum_probs=132.0

Q ss_pred             CCCCCcH-HHHHHHcCCHHHHHHHhcCCCCccccc----CCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCC-CCCCCc
Q 043760           25 NCLSETP-LHVAALLGHEDFAKEILPQKPRIAEEL----DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDT-DVDGRN   98 (345)
Q Consensus        25 ~~~g~t~-Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~----d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~-d~~g~t   98 (345)
                      |..|.|+ ||.|+..|+.+++++|+++|+++ +.+    +..|.||||+|+..|+.+++++|+++|+++ +.. +..|.|
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~g~T  106 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEAKIT  106 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCCCCC
Confidence            6666665 66777779999999999999998 766    468999999999999999999999999999 554 568999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCc
Q 043760           99 PLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAI  178 (345)
Q Consensus        99 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  178 (345)
                      |||+|+..|+.+++++|++.|++                        ++.+|..|.||||+|+..++.+++..+...   
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAd------------------------in~kd~~G~TpL~~A~~~~~~~~~~~~~~~---  159 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGAD------------------------INIQTNDMVTPIELALMICNNFLAFMICDN---  159 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC------------------------CCCCCCCCCCHHHHHHHhCChhHHHHhcCC---
Confidence            99999999999999999999999                        899999999999999999999888666522   


Q ss_pred             cccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccc
Q 043760          179 EVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAI  216 (345)
Q Consensus       179 ~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~  216 (345)
                         ..+..+.+|++++.       +.+++++|+.++.-
T Consensus       160 ---~~~~~~~~~~~~~~-------n~ei~~~Lish~vl  187 (300)
T PHA02884        160 ---EISNFYKHPKKILI-------NFDILKILVSHFIL  187 (300)
T ss_pred             ---cccccccChhhhhc-------cHHHHHHHHHHHHH
Confidence               24677788888652       47899999999983

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=1.7e-22  Score=163.29  Aligned_cols=132  Identities=16%  Similarity=0.154  Sum_probs=109.9

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHh----cCCCCcccccCCCCchHHHHHHHcCCH---HHHHHHHhhCCCCCcCCC-CC
Q 043760           24 VNCLSETPLHVAALLGHEDFAKEIL----PQKPRIAEELDSRKSSALHIASQKGYV---GIVKALLQVIPDKCSDTD-VD   95 (345)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll----~~~~~~~~~~d~~g~tpLh~A~~~g~~---~iv~~Ll~~~~~~~~~~d-~~   95 (345)
                      .|..|.||||+||+.|+...+....    +.....+...|..|.||||+|+..|+.   +++++|++.|+++ +.++ ..
T Consensus        13 ~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~~~   91 (154)
T PHA02736         13 PDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKERVF   91 (154)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-cccCCCC
Confidence            4788999999999999843221111    111223356799999999999999987   4689999999999 6776 58


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhc-CCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhh
Q 043760           96 GRNPLHLAAMRGHIDVLEELVRA-KPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTT  174 (345)
Q Consensus        96 g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  174 (345)
                      |.||||+|+..|+.+++++|+.. +.+                        ++.+|..|.||||+|+..|+.+++++|++
T Consensus        92 g~T~Lh~A~~~~~~~i~~~Ll~~~g~d------------------------~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~  147 (154)
T PHA02736         92 GNTPLHIAVYTQNYELATWLCNQPGVN------------------------MEILNYAFKTPYYVACERHDAKMMNILRA  147 (154)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCC------------------------CccccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999974 777                        88999999999999999999999999999


Q ss_pred             cCCcccc
Q 043760          175 STAIEVN  181 (345)
Q Consensus       175 ~~~~~~~  181 (345)
                      . |++.+
T Consensus       148 ~-ga~~~  153 (154)
T PHA02736        148 K-GAQCK  153 (154)
T ss_pred             c-CCCCC
Confidence            8 76654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.88  E-value=8.5e-22  Score=197.41  Aligned_cols=197  Identities=14%  Similarity=0.056  Sum_probs=143.5

Q ss_pred             CCCHHHHHHHHhc--CCccccCCCCCCCCCcHHH-HHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcC---CH
Q 043760            2 AGSVNTLLELRQQ--DPLILERPTVNCLSETPLH-VAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKG---YV   75 (345)
Q Consensus         2 ~g~~~~v~~ll~~--~~~~~~~~~~~~~g~t~Lh-~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g---~~   75 (345)
                      .|+++.|+.++++  +.++   +..|..|+|||| .|+.+++.++++.|++.+.     .+..|.||||.|+..+   ..
T Consensus        27 ~g~~~~v~~lL~~~~~~~i---n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~~~~~v~   98 (743)
T TIGR00870        27 RGDLASVYRDLEEPKKLNI---NCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISLEYVDAVE   98 (743)
T ss_pred             cCCHHHHHHHhccccccCC---CCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHhccHHHHH
Confidence            6999999999998  4443   334889999999 8888999999999999876     5788999999999732   23


Q ss_pred             HHHHHHHhhCCCC---------CcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccc
Q 043760           76 GIVKALLQVIPDK---------CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELL  146 (345)
Q Consensus        76 ~iv~~Ll~~~~~~---------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  146 (345)
                      .+++.+...+.+.         .......|.||||+|+..|+.+++++|+++|++........    ... .  ..   .
T Consensus        99 ~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~----~~~-~--~~---~  168 (743)
T TIGR00870        99 AILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGD----FFV-K--SQ---G  168 (743)
T ss_pred             HHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCc----hhh-c--CC---C
Confidence            3444455444321         01223569999999999999999999999999854221100    000 0  00   0


Q ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCC-----chhhHHHHHHHccccc
Q 043760          147 NAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDI-----KDWDTGELLRRAGAIS  217 (345)
Q Consensus       147 ~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~-----~~~~i~~~L~~~ga~~  217 (345)
                      ......|.||||+|+..|+.+++++|++. |+|++.+|..|+||||+|+......     ....+.++++..++..
T Consensus       169 ~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~-gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~  243 (743)
T TIGR00870       169 VDSFYHGESPLNAAACLGSPSIVALLSED-PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL  243 (743)
T ss_pred             CCcccccccHHHHHHHhCCHHHHHHHhcC-CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence            01124699999999999999999999999 8899999999999999999832100     1234667777766653

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.86  E-value=2e-21  Score=194.77  Aligned_cols=179  Identities=20%  Similarity=0.177  Sum_probs=140.6

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHc---CCHHHHHHHhcCCCC-----cc----cccCCCCchHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALL---GHEDFAKEILPQKPR-----IA----EELDSRKSSALHIA   69 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~-----~~----~~~d~~g~tpLh~A   69 (345)
                      .++.++++.|++.+.       .+..|+||||.|+..   +...++.++...+++     ..    ...+..|.||||+|
T Consensus        63 ~~~~eiv~lLl~~g~-------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlA  135 (743)
T TIGR00870        63 NENLELTELLLNLSC-------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLA  135 (743)
T ss_pred             cChHHHHHHHHhCCC-------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHH
Confidence            467788888888775       277899999999973   223344444444432     11    11235799999999


Q ss_pred             HHcCCHHHHHHHHhhCCCCCcCCC--------------CCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHH
Q 043760           70 SQKGYVGIVKALLQVIPDKCSDTD--------------VDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEV  135 (345)
Q Consensus        70 ~~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~  135 (345)
                      |..|+.++|++|+++|+++ +..+              ..|+||||.|+..|+.+++++|++.+++              
T Consensus       136 a~~~~~eiVklLL~~GAdv-~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad--------------  200 (743)
T TIGR00870       136 AHRQNYEIVKLLLERGASV-PARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD--------------  200 (743)
T ss_pred             HHhCCHHHHHHHHhCCCCC-CcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc--------------
Confidence            9999999999999999998 3332              3599999999999999999999999988              


Q ss_pred             HHHhcCCcccccccCCCCCCHHHHHHHcC---------CHHHHHHhhhcCCcc---c----cccCCCCCcHHHHHHhcCC
Q 043760          136 LLENMGDFELLNAKDDYGMTILLLAVADK---------QIEAIKFLTTSTAIE---V----NAVTANGFTAWDILAQSKR  199 (345)
Q Consensus       136 l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g---------~~~~v~~Ll~~~~~~---~----~~~n~~g~T~L~~a~~~~~  199 (345)
                                ++.+|..|+||||+|+..+         ..++.++++.. +..   .    +..|.+|.||||+|+.   
T Consensus       201 ----------in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~l-l~~~~~~~el~~i~N~~g~TPL~~A~~---  266 (743)
T TIGR00870       201 ----------ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSL-LDKLRDSKELEVILNHQGLTPLKLAAK---  266 (743)
T ss_pred             ----------hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-HhccCChHhhhhhcCCCCCCchhhhhh---
Confidence                      8999999999999999986         23455666655 333   3    7789999999999999   


Q ss_pred             CCchhhHHHHHHHccccc
Q 043760          200 DIKDWDTGELLRRAGAIS  217 (345)
Q Consensus       200 ~~~~~~i~~~L~~~ga~~  217 (345)
                       .++.+++++|++.++..
T Consensus       267 -~g~~~l~~lLL~~~~~~  283 (743)
T TIGR00870       267 -EGRIVLFRLKLAIKYKQ  283 (743)
T ss_pred             -cCCccHHHHHHHHHHhc
Confidence             88899999999876543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.86  E-value=2.4e-21  Score=180.73  Aligned_cols=189  Identities=23%  Similarity=0.236  Sum_probs=163.7

Q ss_pred             CCCCHHHHHHHHhcCC-----c-----cccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHH
Q 043760            1 MAGSVNTLLELRQQDP-----L-----ILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIAS   70 (345)
Q Consensus         1 ~~g~~~~v~~ll~~~~-----~-----~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~   70 (345)
                      +.|+++.+..||+...     .     ..+.+..|.+|.|+||.||.+|+.+++++|++..+-+ +..|..|.+|||+|+
T Consensus        12 ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg~~plhlaa   90 (854)
T KOG0507|consen   12 KAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGILPLHLAA   90 (854)
T ss_pred             hcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccCcceEEehh
Confidence            3689999999988421     1     1112334789999999999999999999999998877 888999999999999


Q ss_pred             HcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccC
Q 043760           71 QKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKD  150 (345)
Q Consensus        71 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d  150 (345)
                      ..|+.+++++|+.++..+ +..+..|.||||.|++.|+.+++.+|+.++++                        .-.++
T Consensus        91 w~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad------------------------p~i~n  145 (854)
T KOG0507|consen   91 WNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHGHLEVVFYLLKKNAD------------------------PFIRN  145 (854)
T ss_pred             hcCcchHHHHHHhcccCC-CcccccCcCccchhhhhcchHHHHHHHhcCCC------------------------ccccC
Confidence            999999999999999555 88999999999999999999999999999999                        56678


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHhhhcCCcc--------ccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccc
Q 043760          151 DYGMTILLLAVADKQIEAIKFLTTSTAIE--------VNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKD  220 (345)
Q Consensus       151 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--------~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  220 (345)
                      ..+.|+|-+|++.|..++++.|++. ..+        -..++-.+-+|||+|++    +++.++++.|+++|.+.+..
T Consensus       146 ns~~t~ldlA~qfgr~~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~plHlaak----ngh~~~~~~ll~ag~din~~  218 (854)
T KOG0507|consen  146 NSKETVLDLASRFGRAEVVQMLLQK-KFPVQSSLRVGDIKRPFPAIYPLHLAAK----NGHVECMQALLEAGFDINYT  218 (854)
T ss_pred             cccccHHHHHHHhhhhHHHHHHhhh-ccchhhcccCCCCCCCCCCcCCcchhhh----cchHHHHHHHHhcCCCcccc
Confidence            9999999999999999999999977 322        23455677899999999    89999999999999998763

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.85  E-value=9.6e-22  Score=164.45  Aligned_cols=154  Identities=26%  Similarity=0.270  Sum_probs=129.0

Q ss_pred             HHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHH
Q 043760           36 ALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL  115 (345)
Q Consensus        36 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L  115 (345)
                      |+.|+.--|+.-++.....++.-|..|.+|||+||+.|+..++++|+.+|+.+ +..+....||||+|+..|+.++|+.|
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHH
Confidence            34455444555555544444888999999999999999999999999999999 78899999999999999999999999


Q ss_pred             HhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHH
Q 043760          116 VRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILA  195 (345)
Q Consensus       116 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~  195 (345)
                      +++.++                        +|..+..|+|||||||..|+.++++-|+.. |+.++..|++|.|||+.|.
T Consensus        87 l~~kad------------------------vnavnehgntplhyacfwgydqiaedli~~-ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   87 LSRKAD------------------------VNAVNEHGNTPLHYACFWGYDQIAEDLISC-GAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHhcc------------------------cchhhccCCCchhhhhhhcHHHHHHHHHhc-cceeeecccCCCCchhhhc
Confidence            999998                        999999999999999999999999999999 9999999999999999875


Q ss_pred             hcCCCCchhhHHHHHHHccccccc
Q 043760          196 QSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       196 ~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      -    .-...+.++-.++|-.+++
T Consensus       142 p----~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen  142 P----MLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             h----HHHHHHHHHHHHhCCCCCc
Confidence            4    2222334444456665543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=9.1e-20  Score=160.45  Aligned_cols=127  Identities=18%  Similarity=0.194  Sum_probs=110.6

Q ss_pred             cccCCCCch-HHHHHHHcCCHHHHHHHHhhCCCCCcCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCC
Q 043760           56 EELDSRKSS-ALHIASQKGYVGIVKALLQVIPDKCSDT----DVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWV  130 (345)
Q Consensus        56 ~~~d~~g~t-pLh~A~~~g~~~iv~~Ll~~~~~~~~~~----d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~  130 (345)
                      ..+|..|.| +||.|+..|+.+++++|+++|+++ +..    +..|.||||+|+..|+.+++++|+++|++         
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD---------   95 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD---------   95 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------
Confidence            456777765 566777889999999999999999 555    46899999999999999999999999999         


Q ss_pred             ccHHHHHHhcCCccccccc-CCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHH
Q 043760          131 GSTEVLLENMGDFELLNAK-DDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGEL  209 (345)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~-d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~  209 (345)
                                     ++.+ +..|.||||+|+..++.+++++|++. |++++.+|..|.||||+|+.    .++.+++.+
T Consensus        96 ---------------VN~~~~~~g~TpLh~Aa~~~~~eivklLL~~-GAdin~kd~~G~TpL~~A~~----~~~~~~~~~  155 (300)
T PHA02884         96 ---------------VNRYAEEAKITPLYISVLHGCLKCLEILLSY-GADINIQTNDMVTPIELALM----ICNNFLAFM  155 (300)
T ss_pred             ---------------cCcccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHH----hCChhHHHH
Confidence                           8876 46899999999999999999999999 99999999999999999998    555566655


Q ss_pred             HHH
Q 043760          210 LRR  212 (345)
Q Consensus       210 L~~  212 (345)
                      +..
T Consensus       156 ~~~  158 (300)
T PHA02884        156 ICD  158 (300)
T ss_pred             hcC
Confidence            543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=3.1e-20  Score=167.70  Aligned_cols=165  Identities=21%  Similarity=0.232  Sum_probs=140.9

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCC-------
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGY-------   74 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-------   74 (345)
                      ..+.++|++|++.+++++..   |..|+||||.|+..||.+++++|++.|+++ ...|.+|..|+-++...-.       
T Consensus        83 d~~~e~v~~l~e~ga~Vn~~---d~e~wtPlhaaascg~~~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~  158 (527)
T KOG0505|consen   83 DDNLEMVKFLVENGANVNAQ---DNEGWTPLHAAASCGYLNIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETE  158 (527)
T ss_pred             cccHHHHHHHHHhcCCcccc---ccccCCcchhhcccccHHHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHH
Confidence            35789999999999997765   999999999999999999999999999998 5557777777554322111       


Q ss_pred             -------HH------------HHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHH
Q 043760           75 -------VG------------IVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEV  135 (345)
Q Consensus        75 -------~~------------iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~  135 (345)
                             ++            =++..+..|... +..+..|.|.||+|+..|..++.++|++.+.+              
T Consensus       159 ~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~-d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~--------------  223 (527)
T KOG0505|consen  159 MARQGIDIEAARKAEEQTMLDDARQWLNAGAEL-DARHARGATALHVAAANGYTEVAALLLQAGYS--------------  223 (527)
T ss_pred             HHHhcccHHHHhhhhHHHHHHHHHHHHhccccc-cccccccchHHHHHHhhhHHHHHHHHHHhccC--------------
Confidence                   11            133344567666 77777899999999999999999999999998              


Q ss_pred             HHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHh
Q 043760          136 LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ  196 (345)
Q Consensus       136 l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~  196 (345)
                                ++.+|.+|+||||.|+..|..+++++|+++ |++++..+..|.||+++|..
T Consensus       224 ----------~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~-ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  224 ----------VNIKDYDGWTPLHAAAHWGQEDACELLVEH-GADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             ----------cccccccCCCcccHHHHhhhHhHHHHHHHh-hcccchhhhcCCCCccchhh
Confidence                      899999999999999999999999999999 89999999999999999876

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=2.2e-19  Score=139.52  Aligned_cols=129  Identities=29%  Similarity=0.280  Sum_probs=113.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcc
Q 043760           65 ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFE  144 (345)
Q Consensus        65 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~  144 (345)
                      -+-.|+..+....|+.||+..++..+.+|.+|.||||.|+.+|+.+||+.|+..|++                       
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-----------------------  122 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-----------------------  122 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-----------------------
Confidence            367899999999999999999998899999999999999999999999999999999                       


Q ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHH-ccccccccc
Q 043760          145 LLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRR-AGAISAKDL  221 (345)
Q Consensus       145 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~-~ga~~~~~~  221 (345)
                       .+.+...|+||||.||...+.+++.+||++ |+|+|+......||||+|+...   .....+++|+. .+..+....
T Consensus       123 -~~a~T~~GWTPLhSAckWnN~~va~~LLqh-gaDVnA~t~g~ltpLhlaa~~r---n~r~t~~~Ll~dryi~pg~~n  195 (228)
T KOG0512|consen  123 -KEAKTNEGWTPLHSACKWNNFEVAGRLLQH-GADVNAQTKGLLTPLHLAAGNR---NSRDTLELLLHDRYIHPGLKN  195 (228)
T ss_pred             -cccccccCccchhhhhcccchhHHHHHHhc-cCcccccccccchhhHHhhccc---chHHHHHHHhhccccChhhhc
Confidence             889999999999999999999999999999 9999999999999999999842   33455666664 444444433

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.80  E-value=9.1e-20  Score=157.16  Aligned_cols=150  Identities=25%  Similarity=0.299  Sum_probs=125.6

Q ss_pred             CHHHHHHHhcC----CCC----cccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHc-----
Q 043760           40 HEDFAKEILPQ----KPR----IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR-----  106 (345)
Q Consensus        40 ~~~~v~~Ll~~----~~~----~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-----  106 (345)
                      +.+.|+..+..    ++.    ++|..|.+|+|+|||++.+++.++|+.||+.|..-.+..|+-|+||+++|+..     
T Consensus       238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~  317 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQP  317 (452)
T ss_pred             CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcch
Confidence            56666554432    222    25778999999999999999999999999999776699999999999999865     


Q ss_pred             CcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccC-CCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCC
Q 043760          107 GHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKD-DYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTA  185 (345)
Q Consensus       107 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~  185 (345)
                      .+.++|+.|...|.                         +|.+- ..|+|+|++|+.+|+.++|+.||.. |+|+|.+|.
T Consensus       318 ~d~~vV~~LF~mgn-------------------------VNaKAsQ~gQTALMLAVSHGr~d~vk~LLac-gAdVNiQDd  371 (452)
T KOG0514|consen  318 ADRTVVERLFKMGD-------------------------VNAKASQHGQTALMLAVSHGRVDMVKALLAC-GADVNIQDD  371 (452)
T ss_pred             hhHHHHHHHHhccC-------------------------cchhhhhhcchhhhhhhhcCcHHHHHHHHHc-cCCCccccC
Confidence            35778888877653                         66654 5799999999999999999999999 999999999


Q ss_pred             CCCcHHHHHHhcCCCCchhhHHHHHHHc-cccccc
Q 043760          186 NGFTAWDILAQSKRDIKDWDTGELLRRA-GAISAK  219 (345)
Q Consensus       186 ~g~T~L~~a~~~~~~~~~~~i~~~L~~~-ga~~~~  219 (345)
                      +|-|+|+.|+.    +++.||+++|+.. +++...
T Consensus       372 DGSTALMCA~E----HGhkEivklLLA~p~cd~sL  402 (452)
T KOG0514|consen  372 DGSTALMCAAE----HGHKEIVKLLLAVPSCDISL  402 (452)
T ss_pred             CccHHHhhhhh----hChHHHHHHHhccCccccee
Confidence            99999999999    9999999999954 455533

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.79  E-value=7.4e-19  Score=166.13  Aligned_cols=161  Identities=25%  Similarity=0.290  Sum_probs=142.4

Q ss_pred             CCCCCCcHHHHHHHc---CCHHHHHHHhcCCCCcccc----cCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCc------
Q 043760           24 VNCLSETPLHVAALL---GHEDFAKEILPQKPRIAEE----LDSRKSSALHIASQKGYVGIVKALLQVIPDKCS------   90 (345)
Q Consensus        24 ~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~----~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~------   90 (345)
                      +..-|+|.||.|..+   ++.++++.|++..+.+++.    ....|.||||+|+.+.+.++|++|++.|+|+..      
T Consensus       139 RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~F  218 (782)
T KOG3676|consen  139 RGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAF  218 (782)
T ss_pred             ccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccc
Confidence            356799999999984   6779999999998866543    235799999999999999999999999999731      


Q ss_pred             --CCC--------------CCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCC
Q 043760           91 --DTD--------------VDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM  154 (345)
Q Consensus        91 --~~d--------------~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~  154 (345)
                        ..|              ..|+.||..||..++.+|+++|+++++|                        ++.+|..|+
T Consensus       219 F~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd------------------------~~aqDS~GN  274 (782)
T KOG3676|consen  219 FCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD------------------------PNAQDSNGN  274 (782)
T ss_pred             cCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC------------------------CCccccCCC
Confidence              111              2488999999999999999999999999                        999999999


Q ss_pred             CHHHHHHHcCCHHHHHHhhhcCCcc--ccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHc
Q 043760          155 TILLLAVADKQIEAIKFLTTSTAIE--VNAVTANGFTAWDILAQSKRDIKDWDTGELLRRA  213 (345)
Q Consensus       155 t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~  213 (345)
                      |.||.-+.+-..++..++|+. |++  ...+|++|.|||.+|++    .++.++.+.+++.
T Consensus       275 TVLH~lVi~~~~~My~~~L~~-ga~~l~~v~N~qgLTPLtLAak----lGk~emf~~ile~  330 (782)
T KOG3676|consen  275 TVLHMLVIHFVTEMYDLALEL-GANALEHVRNNQGLTPLTLAAK----LGKKEMFQHILER  330 (782)
T ss_pred             hHHHHHHHHHHHHHHHHHHhc-CCCccccccccCCCChHHHHHH----hhhHHHHHHHHHh
Confidence            999999999899999999999 778  89999999999999999    8999999988877

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.78  E-value=6.6e-18  Score=130.69  Aligned_cols=123  Identities=37%  Similarity=0.547  Sum_probs=115.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  104 (345)
                      |..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..+..+++++|++.++.+ +..+..|.||+|+|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHH
Confidence            677999999999999999999999999887 778999999999999999999999999999877 677899999999999


Q ss_pred             HcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhh
Q 043760          105 MRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLT  173 (345)
Q Consensus       105 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  173 (345)
                      ..++.+++++|++++.+                        .+..+..|.||+++|...++.+++++|+
T Consensus        82 ~~~~~~~~~~L~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          82 RNGNLDVVKLLLKHGAD------------------------VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HcCcHHHHHHHHHcCCC------------------------CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999866                        7788899999999999999999999885

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.78  E-value=1.7e-18  Score=126.29  Aligned_cols=84  Identities=33%  Similarity=0.488  Sum_probs=36.5

Q ss_pred             HHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHH
Q 043760           32 LHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDV  111 (345)
Q Consensus        32 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i  111 (345)
                      ||+||..|+.+++++|++.+.++ +.    |.||||+|+..|+.+++++|+++|+++ +..|.+|+||||+|+..|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHHH
Confidence            34444444444444444444333 11    444444444444444444444444444 3444444444444444444444


Q ss_pred             HHHHHhcCCC
Q 043760          112 LEELVRAKPD  121 (345)
Q Consensus       112 v~~Ll~~~~~  121 (345)
                      +++|+++|++
T Consensus        75 ~~~Ll~~g~~   84 (89)
T PF12796_consen   75 VKLLLEHGAD   84 (89)
T ss_dssp             HHHHHHTTT-
T ss_pred             HHHHHHcCCC
Confidence            4444444443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.77  E-value=4.9e-19  Score=170.56  Aligned_cols=206  Identities=25%  Similarity=0.276  Sum_probs=180.1

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+-|.|+.|+.+|..+...   |+.|.+||.+|+-.||..+|+.|+.+.+++-...|+.+.|+|.+||..|..++|++|
T Consensus       767 ggh~e~vellv~rganiehr---dkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelL  843 (2131)
T KOG4369|consen  767 GGHREEVELLVVRGANIEHR---DKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELL  843 (2131)
T ss_pred             CccHHHHHHHHHhccccccc---ccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHH
Confidence            47889999999999987665   999999999999999999999999999999777889999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc--------------HHHHHHhcCCccccc
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS--------------TEVLLENMGDFELLN  147 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~~~~~  147 (345)
                      |..|+.- ..++....|||.+|...|.+++|+.|+..|..+..+.......              ...|++-+.+   +|
T Consensus       844 l~~gank-ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsd---iN  919 (2131)
T KOG4369|consen  844 LNAGANK-EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSD---IN  919 (2131)
T ss_pred             HHhhccc-cccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccch---hc
Confidence            9999988 7788899999999999999999999999998765544322111              5566665555   66


Q ss_pred             ccC-CCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          148 AKD-DYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       148 ~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      ..- .+-+|+|-+|+..|+.+++.+||.. .+++..+-..|.|||+-++.    .+.+++-++|+..||+.+.
T Consensus       920 aqIeTNrnTaltla~fqgr~evv~lLLa~-~anvehRaktgltplme~As----gGyvdvg~~li~~gad~na  987 (2131)
T KOG4369|consen  920 AQIETNRNTALTLALFQGRPEVVFLLLAA-QANVEHRAKTGLTPLMEMAS----GGYVDVGNLLIAAGADTNA  987 (2131)
T ss_pred             cccccccccceeeccccCcchHHHHHHHH-hhhhhhhcccCCcccchhhc----CCccccchhhhhccccccc
Confidence            553 5678999999999999999999998 88999999999999999999    7889999999999999865

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=4.2e-18  Score=124.24  Aligned_cols=82  Identities=32%  Similarity=0.362  Sum_probs=73.3

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      +|++++++.|++.+.++      +. |+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+.+|+.+++++|
T Consensus         7 ~~~~~~~~~ll~~~~~~------~~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~L   78 (89)
T PF12796_consen    7 NGNLEILKFLLEKGADI------NL-GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLEIVKLL   78 (89)
T ss_dssp             TTTHHHHHHHHHTTSTT------TS-SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHHHHHHH
T ss_pred             cCCHHHHHHHHHCcCCC------CC-CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            68999999999987553      22 899999999999999999999999998 88999999999999999999999999


Q ss_pred             HhhCCCCCcCC
Q 043760           82 LQVIPDKCSDT   92 (345)
Q Consensus        82 l~~~~~~~~~~   92 (345)
                      +++|+++ +.+
T Consensus        79 l~~g~~~-~~~   88 (89)
T PF12796_consen   79 LEHGADV-NIR   88 (89)
T ss_dssp             HHTTT-T-TSS
T ss_pred             HHcCCCC-CCc
Confidence            9999998 544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.76  E-value=1.8e-17  Score=128.16  Aligned_cols=124  Identities=34%  Similarity=0.500  Sum_probs=114.8

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHH
Q 043760           58 LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLL  137 (345)
Q Consensus        58 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~  137 (345)
                      +|..|.||||+|+..|+.+++++|++.+.+. ...+..|.+|||.|+..++.+++++|++.++.                
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~----------------   65 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD----------------   65 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----------------
Confidence            5678999999999999999999999999987 68889999999999999999999999999876                


Q ss_pred             HhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHH
Q 043760          138 ENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLR  211 (345)
Q Consensus       138 ~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~  211 (345)
                              ++..+..|.||+|+|+..++.+++++|++. +.+++..|..|.||+++|..    ..+.+++++|+
T Consensus        66 --------~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~Ll  126 (126)
T cd00204          66 --------VNARDKDGNTPLHLAARNGNLDVVKLLLKH-GADVNARDKDGRTPLHLAAK----NGHLEVVKLLL  126 (126)
T ss_pred             --------ccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHh----cCCHHHHHHhC
Confidence                    777888999999999999999999999998 78999999999999999999    67788888763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.76  E-value=3.3e-18  Score=143.42  Aligned_cols=111  Identities=29%  Similarity=0.395  Sum_probs=105.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  104 (345)
                      |..|.+|||+||+.||..+++.|+.+|+.+ +..+....||||+|+.+||-++|+.|++..+|+ +..+..|.||||+||
T Consensus        31 ddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll~~kadv-navnehgntplhyac  108 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADV-NAVNEHGNTPLHYAC  108 (448)
T ss_pred             cccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHHHHhccc-chhhccCCCchhhhh
Confidence            678999999999999999999999999998 898999999999999999999999999999999 899999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760          105 MRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus       105 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      ..|...+.+-|+..|+.                        ++..++.|.|||..|-
T Consensus       109 fwgydqiaedli~~ga~------------------------v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  109 FWGYDQIAEDLISCGAA------------------------VNICNKKGMTPLDKAK  141 (448)
T ss_pred             hhcHHHHHHHHHhccce------------------------eeecccCCCCchhhhc
Confidence            99999999999999988                        8889999999998763

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.72  E-value=7.2e-18  Score=162.67  Aligned_cols=207  Identities=19%  Similarity=0.218  Sum_probs=165.3

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|++.+|+.|++.+.++.-+.  |..++|+|.+||..|+.++|++||..+++- ..++....|||.+|...|.++++..|
T Consensus       800 agh~tvV~~llk~ha~veaQs--drtkdt~lSlacsggr~~vvelLl~~gank-ehrnvsDytPlsla~Sggy~~iI~~l  876 (2131)
T KOG4369|consen  800 AGHITVVQDLLKAHADVEAQS--DRTKDTMLSLACSGGRTRVVELLLNAGANK-EHRNVSDYTPLSLARSGGYTKIIHAL  876 (2131)
T ss_pred             cCchHHHHHHHhhhhhhhhhc--ccccCceEEEecCCCcchHHHHHHHhhccc-cccchhhcCchhhhcCcchHHHHHHH
Confidence            478899999999999887665  778999999999999999999999999987 77889999999999999999999999


Q ss_pred             HhhCCCCCcC-CCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc-------------HHHHHHhcCCccccc
Q 043760           82 LQVIPDKCSD-TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS-------------TEVLLENMGDFELLN  147 (345)
Q Consensus        82 l~~~~~~~~~-~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~  147 (345)
                      |..|.+++.. ..+.|..||++|.++|+.+.++.|++.|.+.+....-+..+             +..|+.....   +.
T Consensus       877 lS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~an---ve  953 (2131)
T KOG4369|consen  877 LSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQAN---VE  953 (2131)
T ss_pred             hhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhh---hh
Confidence            9999888433 34579999999999999999999999998875544332222             4444444433   55


Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHhhhcCCcc-----------------------------------ccccCCCCCcHHH
Q 043760          148 AKDDYGMTILLLAVADKQIEAIKFLTTSTAIE-----------------------------------VNAVTANGFTAWD  192 (345)
Q Consensus       148 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----------------------------------~~~~n~~g~T~L~  192 (345)
                      .+-..|-|||+-++..|.+++-++||.. |+|                                   ++.+|++|+|+|.
T Consensus       954 hRaktgltplme~AsgGyvdvg~~li~~-gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lw 1032 (2131)
T KOG4369|consen  954 HRAKTGLTPLMEMASGGYVDVGNLLIAA-GADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLW 1032 (2131)
T ss_pred             hhcccCCcccchhhcCCccccchhhhhc-ccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccc
Confidence            5666677777777777776666666665 444                                   4456889999999


Q ss_pred             HHHhcCCCCchhhHHHHHHHccccccc
Q 043760          193 ILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       193 ~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      +|+.    -+.+..+.+|++++++...
T Consensus      1033 la~~----Gg~lss~~il~~~~ad~d~ 1055 (2131)
T KOG4369|consen 1033 LASA----GGALSSCPILVSSVADADQ 1055 (2131)
T ss_pred             hhcc----CCccccchHHhhcccChhh
Confidence            9988    6778888999999987744

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.67  E-value=1.2e-15  Score=144.54  Aligned_cols=171  Identities=18%  Similarity=0.227  Sum_probs=142.6

Q ss_pred             CCHHHHHHHHhcCCccccCCCCC--CCCCcHHHHHHHcCCHHHHHHHhcCCCCccccc--------C-------------
Q 043760            3 GSVNTLLELRQQDPLILERPTVN--CLSETPLHVAALLGHEDFAKEILPQKPRIAEEL--------D-------------   59 (345)
Q Consensus         3 g~~~~v~~ll~~~~~~~~~~~~~--~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~--------d-------------   59 (345)
                      |.-++++.|++..|.+.+.+..+  ..|+||||+|+.+.+.++|++|++.|+|+ +.+        +             
T Consensus       157 ~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aRa~G~FF~~~dqk~~rk~T~Y~G  235 (782)
T KOG3676|consen  157 GHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADV-HARACGAFFCPDDQKASRKSTNYTG  235 (782)
T ss_pred             hHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCch-hhHhhccccCcccccccccccCCcc
Confidence            45588899999888777654443  57999999999999999999999999988 321        1             


Q ss_pred             --CCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHH
Q 043760           60 --SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLL  137 (345)
Q Consensus        60 --~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~  137 (345)
                        ..|..||.+||=.++.+|+++|+++|+|+ +.+|.+|.|.||..+..-..+|..++++.|++.               
T Consensus       236 ~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~---------------  299 (782)
T KOG3676|consen  236 YFYFGEYPLSFAACTNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELGANA---------------  299 (782)
T ss_pred             eeeeccCchHHHHHcCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcCCCc---------------
Confidence              13788999999999999999999999999 899999999999999999999999999999872               


Q ss_pred             HhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhc-C------------CccccccCC--CCCcHHHHHHhc
Q 043760          138 ENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTS-T------------AIEVNAVTA--NGFTAWDILAQS  197 (345)
Q Consensus       138 ~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-~------------~~~~~~~n~--~g~T~L~~a~~~  197 (345)
                             +...++..|-|||-+|+..|..++++.+++. .            .-+++..|.  +-+++|.+.+.+
T Consensus       300 -------l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg  367 (782)
T KOG3676|consen  300 -------LEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG  367 (782)
T ss_pred             -------cccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcC
Confidence                   1567789999999999999999999999987 1            123444443  345788887764

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.66  E-value=1.4e-15  Score=130.18  Aligned_cols=126  Identities=33%  Similarity=0.493  Sum_probs=119.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCC-----HHHHHHHHhhCC--CCCcCCCCCCC
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGY-----VGIVKALLQVIP--DKCSDTDVDGR   97 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-----~~iv~~Ll~~~~--~~~~~~d~~g~   97 (345)
                      +..+.+++|.++..+..+++++++..+.++ +.+|..|.||||+|+..|+     .+++++|++.|+  +.....|..|.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            566899999999999999999999999999 9999999999999999999     999999999999  56578899999


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhc
Q 043760           98 NPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTS  175 (345)
Q Consensus        98 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  175 (345)
                      ||||+|+..|+.+++++|++.+++                        ++.++..|.|+++.|+..++.+++..+++.
T Consensus       149 tpl~~A~~~~~~~~~~~ll~~~~~------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         149 TPLHWAALNGDADIVELLLEAGAD------------------------PNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             chhHHHHHcCchHHHHHHHhcCCC------------------------CcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            999999999999999999999998                        788899999999999999999999999987

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.65  E-value=5.6e-15  Score=126.44  Aligned_cols=130  Identities=33%  Similarity=0.392  Sum_probs=122.4

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCc-----HHHHHHHHhcCC--Cccccccc
Q 043760           56 EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGH-----IDVLEELVRAKP--DAASTRLI  128 (345)
Q Consensus        56 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-----~~iv~~Ll~~~~--~~~~~~~~  128 (345)
                      ...+..+.+++|.++..+..+++++++..+.++ +..+..|.||||+|+..++     .+++++|++.++  +.      
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~------  139 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV------  139 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC------
Confidence            556778999999999999999999999999999 8999999999999999999     999999999999  32      


Q ss_pred             CCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHH
Q 043760          129 WVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGE  208 (345)
Q Consensus       129 ~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~  208 (345)
                                       .+.+|..|+||||+|+..|+.+++++|++. +++++.+|..|.|+++.|+.    .++.++++
T Consensus       140 -----------------~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~l~~a~~----~~~~~~~~  197 (235)
T COG0666         140 -----------------NNLRDEDGNTPLHWAALNGDADIVELLLEA-GADPNSRNSYGVTALDPAAK----NGRIELVK  197 (235)
T ss_pred             -----------------ccccCCCCCchhHHHHHcCchHHHHHHHhc-CCCCcccccCCCcchhhhcc----cchHHHHH
Confidence                             677899999999999999999999999999 88999999999999999999    88999999


Q ss_pred             HHHHcc
Q 043760          209 LLRRAG  214 (345)
Q Consensus       209 ~L~~~g  214 (345)
                      .++..+
T Consensus       198 ~l~~~~  203 (235)
T COG0666         198 LLLDKG  203 (235)
T ss_pred             HHHhcC
Confidence            999877

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.63  E-value=2.3e-15  Score=104.91  Aligned_cols=87  Identities=24%  Similarity=0.297  Sum_probs=39.8

Q ss_pred             HHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHH
Q 043760           32 LHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDV  111 (345)
Q Consensus        32 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i  111 (345)
                      +.+++.+|..+-|+..+..+.++ +. ...|++|||||+-.|+.+++++|+..|+++ +.+|+.|.|||..|+..||.++
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nV-n~-~~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNV-NE-IYGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccH-HH-HhCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhhHHH
Confidence            34444444444444444444333 22 124444444444444444444444444444 4444444444444444444444


Q ss_pred             HHHHHhcCCC
Q 043760          112 LEELVRAKPD  121 (345)
Q Consensus       112 v~~Ll~~~~~  121 (345)
                      |++|++.|++
T Consensus        83 VklLL~~GAd   92 (117)
T KOG4214|consen   83 VKLLLQNGAD   92 (117)
T ss_pred             HHHHHHcCcc
Confidence            4444444444

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.62  E-value=4.2e-15  Score=103.61  Aligned_cols=97  Identities=23%  Similarity=0.211  Sum_probs=85.7

Q ss_pred             CCCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHH
Q 043760            1 MAGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKA   80 (345)
Q Consensus         1 ~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~   80 (345)
                      ++|.++.|+.....+-++.+    ...|++|||+||-+|.++++++|+..|+++ +.+|+.|-|||..|+..||.+||++
T Consensus        11 kNG~~DeVk~~v~~g~nVn~----~~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH~~cVkl   85 (117)
T KOG4214|consen   11 KNGEIDEVKQSVNEGLNVNE----IYGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGHRDCVKL   85 (117)
T ss_pred             ccCcHHHHHHHHHccccHHH----HhCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhhHHHHHH
Confidence            47999999999999855443    347999999999999999999999999998 8999999999999999999999999


Q ss_pred             HHhhCCCCCcCCCCCCCcHHHHH
Q 043760           81 LLQVIPDKCSDTDVDGRNPLHLA  103 (345)
Q Consensus        81 Ll~~~~~~~~~~d~~g~tpLh~A  103 (345)
                      ||+.|++- .....+|.+.+..+
T Consensus        86 LL~~GAdr-t~~~PdG~~~~eat  107 (117)
T KOG4214|consen   86 LLQNGADR-TIHAPDGTALIEAT  107 (117)
T ss_pred             HHHcCccc-ceeCCCchhHHhhc
Confidence            99999998 67778887765544

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.53  E-value=4.2e-14  Score=139.26  Aligned_cols=107  Identities=25%  Similarity=0.247  Sum_probs=96.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCc
Q 043760           64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDF  143 (345)
Q Consensus        64 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~  143 (345)
                      +.|+.|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.|++                      
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad----------------------  140 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGAD----------------------  140 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC----------------------
Confidence            3588999999999999999999998 78899999999999999999999999999998                      


Q ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHhhhc------CCccccccCCCCCcHHHHHH
Q 043760          144 ELLNAKDDYGMTILLLAVADKQIEAIKFLTTS------TAIEVNAVTANGFTAWDILA  195 (345)
Q Consensus       144 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~------~~~~~~~~n~~g~T~L~~a~  195 (345)
                        ++.+|..|.||||+|+..|+.+++++|+++      .+++++..+..|.+|+..+.
T Consensus       141 --vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        141 --PTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             --CCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence              899999999999999999999999999987      46677888888888776543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=4.6e-14  Score=127.38  Aligned_cols=121  Identities=22%  Similarity=0.220  Sum_probs=105.9

Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCccc
Q 043760           66 LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFEL  145 (345)
Q Consensus        66 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  145 (345)
                      |.-|+..|.+++|+..+..-.|+ ...+..|.|+||.|+..||.+||++|++.|++                        
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~gan------------------------  608 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGAN------------------------  608 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCc------------------------
Confidence            44578899999999999988888 88999999999999999999999999999999                        


Q ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHc
Q 043760          146 LNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRA  213 (345)
Q Consensus       146 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~  213 (345)
                      +|..|.+||||||+|+..++..+++.|++.+++-+-..-.++.||.+-+-..  +.++..|.++|...
T Consensus       609 VNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~--eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  609 VNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEM--EEGYDQCSQYLYGV  674 (752)
T ss_pred             ccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchh--hhhHHHHHHHHHHH
Confidence            9999999999999999999999999999995555555667899999877552  25667888888743

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.50  E-value=5.4e-14  Score=91.97  Aligned_cols=54  Identities=37%  Similarity=0.511  Sum_probs=28.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHH
Q 043760           28 SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALL   82 (345)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll   82 (345)
                      |.||||+||+.|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            455666666666666666666555554 555556666666666666666665554

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.49  E-value=1.3e-13  Score=135.81  Aligned_cols=86  Identities=31%  Similarity=0.358  Sum_probs=83.3

Q ss_pred             HHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHH
Q 043760           31 PLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHID  110 (345)
Q Consensus        31 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  110 (345)
                      .|+.|+..|+.+.++.|++.++++ +.+|..|.||||+||..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHH
Confidence            588999999999999999999998 889999999999999999999999999999999 899999999999999999999


Q ss_pred             HHHHHHhc
Q 043760          111 VLEELVRA  118 (345)
Q Consensus       111 iv~~Ll~~  118 (345)
                      ++++|+++
T Consensus       163 iv~~Ll~~  170 (664)
T PTZ00322        163 VVQLLSRH  170 (664)
T ss_pred             HHHHHHhC
Confidence            99999998

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.49  E-value=2e-13  Score=114.74  Aligned_cols=121  Identities=23%  Similarity=0.252  Sum_probs=99.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcC
Q 043760           28 SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG  107 (345)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  107 (345)
                      -+.||..+...|..+-...|++.-.++ +.+|..|.|+|..|+..|+.+.|++||+.|+|++...+..+.||||.|+..|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            467888888888888888888765555 7788888888888888888888888888888887778888888888888888


Q ss_pred             cHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhh
Q 043760          108 HIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLT  173 (345)
Q Consensus       108 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  173 (345)
                      +.++.++|++.|+.                        ....+.-|+|+-.+|+.-|+.++|..+=
T Consensus        91 n~dvcrllldaGa~------------------------~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   91 NQDVCRLLLDAGAR------------------------MYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             CchHHHHHHhccCc------------------------cccccchhhhHHHHHHHhcchHHHHHHh
Confidence            88888888888887                        6677777888888888888888877653

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.48  E-value=3.4e-14  Score=93.47  Aligned_cols=48  Identities=29%  Similarity=0.364  Sum_probs=32.8

Q ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHH
Q 043760          146 LNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDIL  194 (345)
Q Consensus       146 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a  194 (345)
                      ++.+|..|+||||+|+.+|+.+++++|++. |++++.+|.+|+||||+|
T Consensus         9 ~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~-g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    9 VNAQDKYGNTPLHWAARYGHSEVVRLLLQN-GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TT---TTS--HHHHHHHHT-HHHHHHHHHC-T--TT---TTS--HHHH-
T ss_pred             CcCcCCCCCcHHHHHHHcCcHHHHHHHHHC-cCCCCCCcCCCCCHHHhC
Confidence            899999999999999999999999999966 999999999999999987

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.48  E-value=9.6e-14  Score=90.80  Aligned_cols=54  Identities=43%  Similarity=0.625  Sum_probs=46.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 043760           62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELV  116 (345)
Q Consensus        62 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  116 (345)
                      |+||||+|++.|+.+++++|+++|.++ +..|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999998 777999999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.45  E-value=8.2e-14  Score=91.63  Aligned_cols=56  Identities=34%  Similarity=0.481  Sum_probs=25.3

Q ss_pred             HhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHH
Q 043760           47 ILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLA  103 (345)
Q Consensus        47 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  103 (345)
                      ||++++..++.+|..|.||||+||..|+.+++++|++.|+++ +.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence            455553333677777777777777777777777777777777 67777777777765

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.43  E-value=7.4e-13  Score=111.39  Aligned_cols=115  Identities=16%  Similarity=0.139  Sum_probs=102.6

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.+....||+.--.   .+.+|..|.|+|..|+..|+.++|++|++.|+++...++..+.||||+|+.+|+.++.++|
T Consensus        22 Kndt~~a~~LLs~vr~---vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrll   98 (396)
T KOG1710|consen   22 KNDTEAALALLSTVRQ---VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLL   98 (396)
T ss_pred             cCcHHHHHHHHHHhhh---hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHH
Confidence            3677888888887433   3445999999999999999999999999999999888889999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCC
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKP  120 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  120 (345)
                      ++.|+.. ...+.-|+|+-..|+.-|+.++|..+-++-+
T Consensus        99 ldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN~~t  136 (396)
T KOG1710|consen   99 LDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINNHIT  136 (396)
T ss_pred             HhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhcccc
Confidence            9999999 7899999999999999999999988766544

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=6.5e-13  Score=120.05  Aligned_cols=87  Identities=29%  Similarity=0.341  Sum_probs=43.3

Q ss_pred             HHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHH
Q 043760           34 VAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLE  113 (345)
Q Consensus        34 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~  113 (345)
                      -|+..|.+|+|+.++..-.+. ...|+.|.|+||-|+-.||.+||++|++.|+++ +..|.+||||||+|+..++..+++
T Consensus       556 DaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  556 DAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             hhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchHHHH
Confidence            344445555555554444443 444445555555555555555555555555555 444555555555555555555555


Q ss_pred             HHHhcCCCc
Q 043760          114 ELVRAKPDA  122 (345)
Q Consensus       114 ~Ll~~~~~~  122 (345)
                      .|++.|+..
T Consensus       634 qLVe~Gaav  642 (752)
T KOG0515|consen  634 QLVESGAAV  642 (752)
T ss_pred             HHHhccceE
Confidence            555544443

>PF13962 PGG: Domain of unknown function

Probab=99.29  E-value=1.2e-12  Score=99.39  Aligned_cols=59  Identities=31%  Similarity=0.394  Sum_probs=46.7

Q ss_pred             hhHHHHhhhhhHHHHHHHHHHHhhhhcCCCCCcccccchhhhhhchhccccc-cccccccccc
Q 043760          259 DDWLEKKLNAAMVVASVISTMGFQAAVDPPQSPELAASSFVVWNTIGVDARF-RFSSFYDQDL  320 (345)
Q Consensus       259 ~~~~~~~~~s~~vva~LIatv~Faa~~t~PGG~~~~~~~f~~~~~~~l~~~~-~~~~f~~~~~  320 (345)
                      +||+++++++++|||+|||||||+|+|+||||+.+.-+   ..|.+.+.... .|..|+.+|.
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~---~~G~~il~~~~~~f~~F~~~nt   60 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDD---DAGTPILAKKPSAFKAFLISNT   60 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc---CCCCchhccccchhhhHHHHHH
Confidence            47899999999999999999999999999999843221   55666666555 7777777643

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.99  E-value=3e-10  Score=108.08  Aligned_cols=91  Identities=27%  Similarity=0.239  Sum_probs=65.2

Q ss_pred             HhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCC-CCCCcHHHHHHHcCcHHHHHHHHhcCCCcccc
Q 043760           47 ILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTD-VDGRNPLHLAAMRGHIDVLEELVRAKPDAAST  125 (345)
Q Consensus        47 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~  125 (345)
                      +-+.+.+..+.+|..|+|+||+|+..+..+++++||++|.++ ..+| ..|+||||.|+.+|+.+++-+|+.+|..    
T Consensus        37 ~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S----  111 (1267)
T KOG0783|consen   37 SEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKGRS----  111 (1267)
T ss_pred             HHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcCCc----
Confidence            334455556777777777777777777777777777777777 4444 3577777777777777777777777766    


Q ss_pred             cccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHH
Q 043760          126 RLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVA  162 (345)
Q Consensus       126 ~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~  162 (345)
                                          +..+|.+|..||..-++
T Consensus       112 --------------------L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 --------------------LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             --------------------eEEecccCCCHHHHHhh
Confidence                                66777777777776555

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.95  E-value=2.1e-09  Score=98.47  Aligned_cols=113  Identities=23%  Similarity=0.250  Sum_probs=99.5

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCC-CcccccCCCCchHHHHHHHcCCHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKP-RIAEELDSRKSSALHIASQKGYVGIVKA   80 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~-~~~~~~d~~g~tpLh~A~~~g~~~iv~~   80 (345)
                      ++|+-.+++....|..+..+   +.+..+.||+|+.-|+-++|+||+++++ ++++..|..|.|+||-|+-.++-.++++
T Consensus       876 ~~D~~klqE~h~~gg~ll~~---~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~  952 (1004)
T KOG0782|consen  876 SSDLMKLQETHLNGGSLLIQ---GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQL  952 (1004)
T ss_pred             hccHHHHHHHHhcCCceEee---CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHH
Confidence            45555666676777776665   8889999999999999999999999987 5568889999999999999999999999


Q ss_pred             HHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhc
Q 043760           81 LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRA  118 (345)
Q Consensus        81 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  118 (345)
                      |++.|+.+ ...|..|.||-..|-..|..+...||-.+
T Consensus       953 lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  953 LVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            99999999 78999999999999999999999888654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.92  E-value=9.6e-10  Score=98.67  Aligned_cols=96  Identities=25%  Similarity=0.272  Sum_probs=88.4

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHH
Q 043760           92 TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKF  171 (345)
Q Consensus        92 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~  171 (345)
                      .+.++..++++|+..|....++-+.-.+.+                        ++.+|.+.+|+||+|+..|+.+++++
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D------------------------~~~~DyD~RTaLHvAAaEG~v~v~kf  557 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMD------------------------LETKDYDDRTALHVAAAEGHVEVVKF  557 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhccc------------------------ccccccccchhheeecccCceeHHHH
Confidence            345677899999999999999999888888                        99999999999999999999999999


Q ss_pred             hhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccc
Q 043760          172 LTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGA  215 (345)
Q Consensus       172 Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga  215 (345)
                      |++..+++++.+|..|+|||+-|..    .++.+++++|.+.--
T Consensus       558 l~~~~kv~~~~kDRw~rtPlDdA~~----F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  558 LLNACKVDPDPKDRWGRTPLDDAKH----FKHKEVVKLLEEAQY  597 (622)
T ss_pred             HHHHHcCCCChhhccCCCcchHhHh----cCcHHHHHHHHHHhc
Confidence            9999999999999999999999999    889999999987544

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.91  E-value=4.6e-09  Score=96.24  Aligned_cols=119  Identities=24%  Similarity=0.177  Sum_probs=104.9

Q ss_pred             HHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCC-CCcCCCCCCCcHHHHHHHcCcHH
Q 043760           32 LHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD-KCSDTDVDGRNPLHLAAMRGHID  110 (345)
Q Consensus        32 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~-~~~~~d~~g~tpLh~A~~~g~~~  110 (345)
                      +..|+..+++--++.+...|.++ -.++.+..|.||+|++.|+-++|+++|++|+. +.+..|..|+|+||-|+..++..
T Consensus       870 il~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            55666777766667777788888 67799999999999999999999999999974 45678899999999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhc
Q 043760          111 VLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTS  175 (345)
Q Consensus       111 iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  175 (345)
                      +.++|++.|+.                        +...|..|.||-.-|-+.|..+..-+|-..
T Consensus       949 vc~~lvdagas------------------------l~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  949 VCQLLVDAGAS------------------------LRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchh------------------------heecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            99999999998                        888999999999999999999999988755

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.89  E-value=9.2e-09  Score=92.90  Aligned_cols=96  Identities=27%  Similarity=0.220  Sum_probs=84.9

Q ss_pred             cccCCCCchH------HHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccC
Q 043760           56 EELDSRKSSA------LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIW  129 (345)
Q Consensus        56 ~~~d~~g~tp------Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  129 (345)
                      ..+|.+|.+.      ||..++.|+.+..-.||..|++++..--..|.||||+|++.|+..-+++|+-+|++        
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD--------  192 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD--------  192 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC--------
Confidence            4567777665      89999999999999999999999666667899999999999999999999999999        


Q ss_pred             CccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhc
Q 043760          130 VGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTS  175 (345)
Q Consensus       130 ~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  175 (345)
                                      ++..|..|.||+.+|-..||-++.+.|++.
T Consensus       193 ----------------~~a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  193 ----------------PGAQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             ----------------CCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence                            899999999999999999999888877654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.88  E-value=2e-09  Score=96.61  Aligned_cols=94  Identities=28%  Similarity=0.242  Sum_probs=85.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  104 (345)
                      ..++...+.+|++.|++..++.+.-.+.++ +.+|.+.+|+||.||..|+.+++++|++......+.+|.+|+|||.-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            445678899999999999999999999998 8999999999999999999999999999765544889999999999999


Q ss_pred             HcCcHHHHHHHHhcC
Q 043760          105 MRGHIDVLEELVRAK  119 (345)
Q Consensus       105 ~~g~~~iv~~Ll~~~  119 (345)
                      ..+|.+++++|-+.-
T Consensus       582 ~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hcCcHHHHHHHHHHh
Confidence            999999999997753

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.87  E-value=1.6e-08  Score=91.45  Aligned_cols=95  Identities=23%  Similarity=0.275  Sum_probs=84.4

Q ss_pred             CCCCCCCCcH------HHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCC
Q 043760           22 PTVNCLSETP------LHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVD   95 (345)
Q Consensus        22 ~~~~~~g~t~------Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~   95 (345)
                      ..+|.+|.|.      ||..++.|+.+.+-.||..|++....-...|.||||.|++.|+..-+++|+-+|+|+ ...|.+
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~  199 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSS  199 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCC
Confidence            3456666665      999999999999999999999984444567999999999999999999999999999 899999


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHh
Q 043760           96 GRNPLHLAAMRGHIDVLEELVR  117 (345)
Q Consensus        96 g~tpLh~A~~~g~~~iv~~Ll~  117 (345)
                      |.||+.+|-..||-++.+-|++
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHH
Confidence            9999999999999988888776

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.84  E-value=1.8e-09  Score=102.92  Aligned_cols=96  Identities=21%  Similarity=0.188  Sum_probs=80.7

Q ss_pred             HHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccC-CCCchHHHHHHHcCCHHHHHHHHhhCC
Q 043760            8 LLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELD-SRKSSALHIASQKGYVGIVKALLQVIP   86 (345)
Q Consensus         8 v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~~iv~~Ll~~~~   86 (345)
                      ++.++++...-. .+..|..|+|+||+|+..|..+++++|+++|.++ ..+| ..|+||||-|...|+.+++.+||.+|.
T Consensus        33 lk~F~~k~c~n~-anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g~  110 (1267)
T KOG0783|consen   33 LKGFSEKSCQNL-ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKGR  110 (1267)
T ss_pred             HHHHHHHhhhhh-hhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcCC
Confidence            445555433211 2334889999999999999999999999999998 6666 479999999999999999999999999


Q ss_pred             CCCcCCCCCCCcHHHHHHHc
Q 043760           87 DKCSDTDVDGRNPLHLAAMR  106 (345)
Q Consensus        87 ~~~~~~d~~g~tpLh~A~~~  106 (345)
                      .+ ...|++|..||..-++-
T Consensus       111 SL-~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  111 SL-RIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             ce-EEecccCCCHHHHHhhc
Confidence            98 89999999999877653

>PF13606 Ank_3: Ankyrin repeat

Probab=98.79  E-value=7.1e-09  Score=58.28  Aligned_cols=30  Identities=40%  Similarity=0.523  Sum_probs=27.0

Q ss_pred             CCCCHHHHHHHcCCHHHHHHhhhcCCccccc
Q 043760          152 YGMTILLLAVADKQIEAIKFLTTSTAIEVNA  182 (345)
Q Consensus       152 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  182 (345)
                      +|+||||+|++.|+.+++++||++ |+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~-gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEH-GADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHc-CCCCCC
Confidence            489999999999999999999998 888874

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.76  E-value=9.8e-09  Score=59.38  Aligned_cols=33  Identities=24%  Similarity=0.257  Sum_probs=30.5

Q ss_pred             CCCCHHHHHHHcCCHHHHHHhhhcCCccccccCC
Q 043760          152 YGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTA  185 (345)
Q Consensus       152 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~  185 (345)
                      +|+||||+|+..|+.+++++|+++ |++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH-GADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT-TSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC-cCCCCCCCC
Confidence            589999999999999999999998 999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.68  E-value=2.6e-08  Score=55.97  Aligned_cols=27  Identities=37%  Similarity=0.511  Sum_probs=15.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhCCCC
Q 043760           62 KSSALHIASQKGYVGIVKALLQVIPDK   88 (345)
Q Consensus        62 g~tpLh~A~~~g~~~iv~~Ll~~~~~~   88 (345)
                      |+||||+||+.|+.+++++|+++|+++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            455555555555555555555555554

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.64  E-value=7.8e-08  Score=87.99  Aligned_cols=88  Identities=27%  Similarity=0.413  Sum_probs=72.5

Q ss_pred             cHHHHHHHcCCHHHHHH-HhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCc
Q 043760           30 TPLHVAALLGHEDFAKE-ILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGH  108 (345)
Q Consensus        30 t~Lh~Aa~~g~~~~v~~-Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  108 (345)
                      -|||+++.....+-... |...-...++..|..|.||||+|+..|+.+.++.|+..|+++ ..+|+.|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            35899998876665544 333334445888999999999999999999999999999999 8999999999999999999


Q ss_pred             HHHHHHHHhc
Q 043760          109 IDVLEELVRA  118 (345)
Q Consensus       109 ~~iv~~Ll~~  118 (345)
                      .+++..++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            8888777654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.64  E-value=4.9e-08  Score=56.40  Aligned_cols=27  Identities=41%  Similarity=0.468  Sum_probs=13.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhCCCC
Q 043760           62 KSSALHIASQKGYVGIVKALLQVIPDK   88 (345)
Q Consensus        62 g~tpLh~A~~~g~~~iv~~Ll~~~~~~   88 (345)
                      |.||||+|+..|+.+++++|+++|+++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            445555555555555555555555544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.62  E-value=9.7e-08  Score=87.96  Aligned_cols=89  Identities=24%  Similarity=0.228  Sum_probs=77.6

Q ss_pred             HHHHHHcCCHHHHHHHhcCCCCc---ccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCc
Q 043760           32 LHVAALLGHEDFAKEILPQKPRI---AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGH  108 (345)
Q Consensus        32 Lh~Aa~~g~~~~v~~Ll~~~~~~---~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  108 (345)
                      |.-|+...++..+-+||.+|...   ....+.+|+|+||+||+.|++.+.++|+-+|.|+ ...|.+|+|+|.||-+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhccc
Confidence            56677777888888899887432   1345678899999999999999999999999999 7999999999999999999


Q ss_pred             HHHHHHHHhcCCC
Q 043760          109 IDVLEELVRAKPD  121 (345)
Q Consensus       109 ~~iv~~Ll~~~~~  121 (345)
                      .+++..|+++|..
T Consensus       707 qec~d~llq~gcp  719 (749)
T KOG0705|consen  707 QECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999865

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.62  E-value=1.1e-07  Score=87.61  Aligned_cols=67  Identities=22%  Similarity=0.156  Sum_probs=61.4

Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          148 AKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       148 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      ..+.+|+|+||+||..|++.+.++|+-+ |+|+.++|..|+|||-||-+    .+..+++++|+++|+....
T Consensus       656 ~~~~~grt~LHLa~~~gnVvl~QLLiWy-g~dv~~rda~g~t~l~yar~----a~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  656 CGEGDGRTALHLAARKGNVVLAQLLIWY-GVDVMARDAHGRTALFYARQ----AGSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             ccCCCCcchhhhhhhhcchhHHHHHHHh-CccceecccCCchhhhhHhh----cccHHHHHHHHHcCCCccc
Confidence            3467889999999999999999999987 99999999999999999999    8889999999999997643

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.52  E-value=3e-07  Score=84.28  Aligned_cols=88  Identities=27%  Similarity=0.321  Sum_probs=74.5

Q ss_pred             hHHHHHHHcCCHHHHHH-HHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCC
Q 043760           64 SALHIASQKGYVGIVKA-LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGD  142 (345)
Q Consensus        64 tpLh~A~~~g~~~iv~~-Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~  142 (345)
                      -|||+++.....+-+.. |...-...++..|..|.||||+|+..|+.+.++.|+..+++                     
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad---------------------   80 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD---------------------   80 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC---------------------
Confidence            35999988877665544 33333344588999999999999999999999999999998                     


Q ss_pred             cccccccCCCCCCHHHHHHHcCCHHHHHHhhhc
Q 043760          143 FELLNAKDDYGMTILLLAVADKQIEAIKFLTTS  175 (345)
Q Consensus       143 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  175 (345)
                         +..+++.|++|||-|+..|+.+++..+|.+
T Consensus        81 ---v~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   81 ---VSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             ---ccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence               788999999999999999999999888876

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.41  E-value=3e-07  Score=90.67  Aligned_cols=131  Identities=21%  Similarity=0.144  Sum_probs=104.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHhcC-CCCcccccCCCCchHHHHHHHcCCHHHHHHHHh-hCCCCCcCCCCCCCcHHH
Q 043760           24 VNCLSETPLHVAALLGHEDFAKEILPQ-KPRIAEELDSRKSSALHIASQKGYVGIVKALLQ-VIPDKCSDTDVDGRNPLH  101 (345)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~tpLh  101 (345)
                      .+..|.+.||+++..+..-+++.+++. +... ...|.+|.-.+|+ |..++.++.-+|+. .|..+ +.+|..|+||||
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai-~i~D~~G~tpL~  646 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVAI-DIRDRNGWTPLH  646 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeeccccc-ccccCCCCcccc
Confidence            366799999999999999999999997 4444 6678888889999 55556666655554 44555 899999999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhc
Q 043760          102 LAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTS  175 (345)
Q Consensus       102 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  175 (345)
                      +|+.+|+..++..|++.+++.....+                  .....-.|.|+--+|..+|+..+.-+|-+.
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~td------------------ps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTD------------------PSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccC------------------CCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999998887543311                  344455699999999999998888877654

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.36  E-value=3.9e-07  Score=90.23  Aligned_cols=78  Identities=28%  Similarity=0.290  Sum_probs=74.9

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhh
Q 043760           94 VDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLT  173 (345)
Q Consensus        94 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  173 (345)
                      ..|.|+||.|+..|...++++|++++++                        +|.+|..|+||||.+...|+...+..|+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~------------------------vn~~d~~g~~plh~~~~~g~~~~~~~ll  709 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD------------------------VNALDSKGRTPLHHATASGHTSIACLLL  709 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc------------------------chhhhccCCCcchhhhhhcccchhhhhc
Confidence            4689999999999999999999999999                        9999999999999999999999999999


Q ss_pred             hcCCccccccCCCCCcHHHHHHh
Q 043760          174 TSTAIEVNAVTANGFTAWDILAQ  196 (345)
Q Consensus       174 ~~~~~~~~~~n~~g~T~L~~a~~  196 (345)
                      ++ |++.++.+.+|.+|+++|..
T Consensus       710 ~~-~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  710 KR-GADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             cc-cccccccCccCcchhhHHhh
Confidence            98 99999999999999999988

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.33  E-value=2e-06  Score=83.25  Aligned_cols=135  Identities=21%  Similarity=0.135  Sum_probs=103.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCC---cccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPR---IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLH  101 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh  101 (345)
                      ...+.--+..|+.+|+.-.|+.+++....   ..+..|.-|+++|++|..+.+.+++++|++++...        ..+|.
T Consensus        22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL   93 (822)
T KOG3609|consen   22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALL   93 (822)
T ss_pred             cchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHH
Confidence            34456678899999999999999986433   23889999999999999999999999999986554        34899


Q ss_pred             HHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCcccc
Q 043760          102 LAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVN  181 (345)
Q Consensus       102 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  181 (345)
                      +|+..|..++|+.++.+.........              ....-...-..+.|||.+||..++.||+++||++ |+.+-
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~--------------~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k-g~~i~  158 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLER--------------SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR-GHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhcc--------------ccccCcccCCCCccHHHHHHHhcchHHHHHHHHc-CCCCC
Confidence            99999999999999987554211100              0000112224578999999999999999999999 65554


Q ss_pred             c
Q 043760          182 A  182 (345)
Q Consensus       182 ~  182 (345)
                      .
T Consensus       159 ~  159 (822)
T KOG3609|consen  159 I  159 (822)
T ss_pred             C
Confidence            3

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.22  E-value=4.1e-06  Score=81.22  Aligned_cols=124  Identities=19%  Similarity=0.194  Sum_probs=100.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCC---CCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhc
Q 043760           64 SALHIASQKGYVGIVKALLQVIPD---KCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENM  140 (345)
Q Consensus        64 tpLh~A~~~g~~~iv~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~  140 (345)
                      --.-.|+..|+.-.|+..++....   ..+..|.-|+++|+.|+.+.+.+++++|++....                   
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~-------------------   87 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE-------------------   87 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc-------------------
Confidence            345689999999999999886554   1367889999999999999999999999986543                   


Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCcc---------ccccCCCCCcHHHHHHhcCCCCchhhHHHHHH
Q 043760          141 GDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIE---------VNAVTANGFTAWDILAQSKRDIKDWDTGELLR  211 (345)
Q Consensus       141 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---------~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~  211 (345)
                           .       ..+|.+|+..|..++|+.++.+..-.         -...-..+-||+.+|+.    .+++||+++|+
T Consensus        88 -----~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh----~NnyEil~~Ll  151 (822)
T KOG3609|consen   88 -----E-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAH----LNNFEILQCLL  151 (822)
T ss_pred             -----c-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHH----hcchHHHHHHH
Confidence                 1       44899999999999999999873211         11333567899999999    89999999999


Q ss_pred             HcccccccccC
Q 043760          212 RAGAISAKDLQ  222 (345)
Q Consensus       212 ~~ga~~~~~~~  222 (345)
                      ..|+...++..
T Consensus       152 ~kg~~i~~PH~  162 (822)
T KOG3609|consen  152 TRGHCIPIPHD  162 (822)
T ss_pred             HcCCCCCCCcc
Confidence            99998765433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.19  E-value=1.5e-06  Score=86.24  Aligned_cols=89  Identities=29%  Similarity=0.398  Sum_probs=81.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHH
Q 043760           26 CLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM  105 (345)
Q Consensus        26 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  105 (345)
                      ..|.|+||.|+..|..-+++.|++.++++ +..|..|++|||.+...|+...+..|+++|++. +..+.+|.+||++|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRGADP-NAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhccccccc-cccCccCcchhhHHhh
Confidence            45799999999999999999999999997 999999999999999999999999999999999 8999999999999988


Q ss_pred             cCcHHHHHHHH
Q 043760          106 RGHIDVLEELV  116 (345)
Q Consensus       106 ~g~~~iv~~Ll  116 (345)
                      ..+.+++-++.
T Consensus       732 ~~~~d~~~l~~  742 (785)
T KOG0521|consen  732 AANADIVLLLR  742 (785)
T ss_pred             hccccHHHHHh
Confidence            87766664443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.13  E-value=6.4e-06  Score=72.64  Aligned_cols=72  Identities=26%  Similarity=0.168  Sum_probs=60.7

Q ss_pred             cHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHH
Q 043760           30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLA  103 (345)
Q Consensus        30 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  103 (345)
                      --|..||+.|+.+.|++|++.|.++ |..|....+||.+|+..||.++|++||++|+-. ..-.-+|...++-|
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRCHYGA  109 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchhhhhh
Confidence            3588999999999999999999888 999999999999999999999999999999865 44444565554433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.97  E-value=2.4e-05  Score=62.78  Aligned_cols=66  Identities=18%  Similarity=0.202  Sum_probs=57.5

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCC
Q 043760           23 TVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK   88 (345)
Q Consensus        23 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~   88 (345)
                      .+|.+|+|+|++|++.|+.+.+.+|+.+|...+...|..|.+++.+|=+.|+.++++.|.+...+-
T Consensus         7 ~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    7 ARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             chhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            458899999999999999999999999995445889999999999999999999999998875444

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.97  E-value=2.4e-05  Score=62.74  Aligned_cols=65  Identities=22%  Similarity=0.123  Sum_probs=60.7

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhhC-CCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCC
Q 043760           56 EELDSRKSSALHIASQKGYVGIVKALLQVI-PDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD  121 (345)
Q Consensus        56 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~-~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~  121 (345)
                      +.+|..|+|+|+.|+..|..+.+.+|+.+| +.+ ...|..|.+.+.+|-+.|..++++.|-+...+
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~v-gv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFV-GVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCcccc-cccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            889999999999999999999999999999 555 89999999999999999999999999987554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.95  E-value=2.7e-05  Score=68.76  Aligned_cols=60  Identities=27%  Similarity=0.279  Sum_probs=55.7

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcc
Q 043760           63 SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAA  123 (345)
Q Consensus        63 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~  123 (345)
                      .--|.+||+.|..+.|++|++.|..+ +..|.....||.+|+..||.++|++|+++|+-+.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~   96 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS   96 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence            34589999999999999999999999 8999999999999999999999999999999653

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.87  E-value=2e-05  Score=78.17  Aligned_cols=128  Identities=18%  Similarity=0.156  Sum_probs=93.2

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhh-CCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHH
Q 043760           56 EELDSRKSSALHIASQKGYVGIVKALLQV-IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTE  134 (345)
Q Consensus        56 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~  134 (345)
                      ......|++.||+++..++.-+++.+++- +... ...|.+|...+|.++ .++.+.+-+++......            
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~a------------  633 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFCA-ALGYEWAFLPISADGVA------------  633 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhHhh-hcCCceeEEEEeecccc------------
Confidence            44566788999999999999888888885 4444 456777777788744 44445554554432221            


Q ss_pred             HHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCcc------ccccCCCCCcHHHHHHhcCCCCchhhHHH
Q 043760          135 VLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIE------VNAVTANGFTAWDILAQSKRDIKDWDTGE  208 (345)
Q Consensus       135 ~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~------~~~~n~~g~T~L~~a~~~~~~~~~~~i~~  208 (345)
                                 ++.+|..|+||||+|+..|+..++..|+.. |++      +...+-.|.|+-++|..    .++..+.-
T Consensus       634 -----------i~i~D~~G~tpL~wAa~~G~e~l~a~l~~l-ga~~~~~tdps~~~p~g~ta~~la~s----~g~~gia~  697 (975)
T KOG0520|consen  634 -----------IDIRDRNGWTPLHWAAFRGREKLVASLIEL-GADPGAVTDPSPETPGGKTAADLARA----NGHKGIAG  697 (975)
T ss_pred             -----------cccccCCCCcccchHhhcCHHHHHHHHHHh-ccccccccCCCCCCCCCCchhhhhhc----ccccchHH
Confidence                       889999999999999999999999999977 444      33344568899999887    55666666


Q ss_pred             HHHHc
Q 043760          209 LLRRA  213 (345)
Q Consensus       209 ~L~~~  213 (345)
                      +|.+.
T Consensus       698 ~lse~  702 (975)
T KOG0520|consen  698 YLSEK  702 (975)
T ss_pred             HHhhh
Confidence            66554

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.94  E-value=0.001  Score=61.09  Aligned_cols=48  Identities=21%  Similarity=0.273  Sum_probs=42.9

Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHh
Q 043760          148 AKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ  196 (345)
Q Consensus       148 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~  196 (345)
                      ..+..-.|+||+|+..|..++|.+||+. |+|+..+|..|+||.+++..
T Consensus       425 ~~~~ltsT~LH~aa~qg~~k~v~~~Lee-g~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  425 ANDYLTSTFLHYAAAQGARKCVKYFLEE-GCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             ccccccchHHHHHHhcchHHHHHHHHHh-cCCchhcccCCCCccccccc
Confidence            3445567999999999999999999999 79999999999999998764

>smart00248 ANK ankyrin repeats

Probab=96.83  E-value=0.0021  Score=34.45  Aligned_cols=29  Identities=31%  Similarity=0.453  Sum_probs=23.5

Q ss_pred             CCCCHHHHHHHcCCHHHHHHhhhcCCcccc
Q 043760          152 YGMTILLLAVADKQIEAIKFLTTSTAIEVN  181 (345)
Q Consensus       152 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  181 (345)
                      .|.||+|+|+..++.++++.|++. +.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~-~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDK-GADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence            378899999999999999999987 54543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.82  E-value=0.0019  Score=34.65  Aligned_cols=25  Identities=36%  Similarity=0.492  Sum_probs=13.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCC
Q 043760           28 SETPLHVAALLGHEDFAKEILPQKP   52 (345)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~   52 (345)
                      |.||||+|+..|+.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4455555555555555555555444

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.55  E-value=0.0046  Score=56.99  Aligned_cols=64  Identities=30%  Similarity=0.249  Sum_probs=51.8

Q ss_pred             CHHHHHHHhcCCCCcc-----cccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 043760           40 HEDFAKEILPQKPRIA-----EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (345)
Q Consensus        40 ~~~~v~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  104 (345)
                      -.+.+++|.+++.+..     ...+.--.|+||||+..|..++|.+||+.|+|+ ...|..|+||..++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccc
Confidence            3567788877765431     122344679999999999999999999999999 799999999999987

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.92  E-value=0.22  Score=41.69  Aligned_cols=48  Identities=13%  Similarity=0.117  Sum_probs=33.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhh
Q 043760           29 ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV   84 (345)
Q Consensus        29 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~   84 (345)
                      .-.|--|+..-+.+-+..++....+.        .++|-++..++..+++-+|+.+
T Consensus       154 ~isledAV~AsN~~~i~~~VtdKkdA--------~~Am~~si~~~K~dva~~lls~  201 (284)
T PF06128_consen  154 DISLEDAVKASNYEEISNLVTDKKDA--------HQAMWLSIGNAKEDVALYLLSK  201 (284)
T ss_pred             cccHHHHHhhcCHHHHHHHhcchHHH--------HHHHHHHhcccHHHHHHHHHhh
Confidence            34466777777777777666544332        3678888888888888888875

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.30  E-value=0.3  Score=40.93  Aligned_cols=120  Identities=16%  Similarity=0.140  Sum_probs=78.7

Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCccc
Q 043760           66 LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFEL  145 (345)
Q Consensus        66 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  145 (345)
                      |--|+...+.+-+.-++....        .-.++|-+|+..+..+++.+|+.+..-....          .         
T Consensus       157 ledAV~AsN~~~i~~~VtdKk--------dA~~Am~~si~~~K~dva~~lls~f~ft~~d----------v---------  209 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKK--------DAHQAMWLSIGNAKEDVALYLLSKFNFTKQD----------V---------  209 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchH--------HHHHHHHHHhcccHHHHHHHHHhhcceecch----------h---------
Confidence            445666666555554443222        2356888999999999999999864321000          0         


Q ss_pred             ccccCCCCCCHHHHHHH--cCCHHHHHHhhhcCCccccc---cCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccc
Q 043760          146 LNAKDDYGMTILLLAVA--DKQIEAIKFLTTSTAIEVNA---VTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISA  218 (345)
Q Consensus       146 ~~~~d~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~---~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~  218 (345)
                      ....  .+.--+-++..  ..+..+++++|.++-+++|.   +-+.|.|.|+-|.+    +++.+++.+|++.||...
T Consensus       210 ~~~~--~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~K----y~~~emi~~Llk~GA~~~  281 (284)
T PF06128_consen  210 ASME--KELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMK----YKNSEMIAFLLKYGAISG  281 (284)
T ss_pred             hhcC--cchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHh----cCcHHHHHHHHHcCcccc
Confidence            0000  01112223222  24678999999997788875   46789999999999    888999999999999553

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=91.64  E-value=2.2  Score=34.70  Aligned_cols=140  Identities=11%  Similarity=-0.006  Sum_probs=88.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcC
Q 043760           28 SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG  107 (345)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  107 (345)
                      -+..|..|+..+.+.++++.-+...+-    -...++..-.||+..+.|+|+++-+.-.      -.+-.+-...|....
T Consensus        46 ~~CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~------i~~~~~iFdIA~~~k  115 (192)
T PF03158_consen   46 MWCLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLH------IYNPEDIFDIAFAKK  115 (192)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccC------CCCchhhhhhhhhcc
Confidence            344577888889888888776543211    1234567788999999999999843321      123345567788777


Q ss_pred             cHHHHH----HHHhcCCCcccccccCCccHHHHHHhcCCcccccccC--CCCCCHHHHHHHcCCHHHHHHhhhcCCcccc
Q 043760          108 HIDVLE----ELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKD--DYGMTILLLAVADKQIEAIKFLTTSTAIEVN  181 (345)
Q Consensus       108 ~~~iv~----~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d--~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  181 (345)
                      +.++..    ++.++...                        -...|  .--..-|..|+..|....+...|+.+| +++
T Consensus       116 DlsLyslGY~l~~~~~~~------------------------~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg-~~~  170 (192)
T PF03158_consen  116 DLSLYSLGYKLLFNRMMS------------------------EHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGG-NVD  170 (192)
T ss_pred             chhHHHHHHHHHHhhccc------------------------ccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCC-ccc
Confidence            766521    11221111                        00000  001135788999999999999999965 333


Q ss_pred             ccCCCCCcHHHHHHhcCCCCchhhHHHHHHH
Q 043760          182 AVTANGFTAWDILAQSKRDIKDWDTGELLRR  212 (345)
Q Consensus       182 ~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~  212 (345)
                            .++|..|+.    +++..|..+++.
T Consensus       171 ------~~vls~Av~----ynhRkIL~yfi~  191 (192)
T PF03158_consen  171 ------IIVLSQAVK----YNHRKILDYFIR  191 (192)
T ss_pred             ------HHHHHHHHH----hhHHHHHHHhhc
Confidence                  388999999    777778777653

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.99  E-value=0.54  Score=32.52  Aligned_cols=46  Identities=20%  Similarity=0.209  Sum_probs=24.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhc
Q 043760           65 ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRA  118 (345)
Q Consensus        65 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  118 (345)
                      .|.+|+..|+.|+++.+++.+ .+    +   ...+..|+...+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KP----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-cc----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            355566666666666555443 11    0   2345566666666666666554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.86  E-value=0.83  Score=31.57  Aligned_cols=48  Identities=17%  Similarity=0.185  Sum_probs=40.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhh
Q 043760           29 ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV   84 (345)
Q Consensus        29 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~   84 (345)
                      ...|..|+..|+.|+++.+++.+ .+ +      ...|..|+..-+-+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~-~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KP-D------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-cc-H------HHHHHHHHHHhhHHHHHHHHHh
Confidence            45789999999999999999654 22 1      3579999999999999999987

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=86.07  E-value=4  Score=33.27  Aligned_cols=111  Identities=16%  Similarity=0.183  Sum_probs=74.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHH----HHHhhCCCCCcCCCCC--CCcHH
Q 043760           27 LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVK----ALLQVIPDKCSDTDVD--GRNPL  100 (345)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~----~Ll~~~~~~~~~~d~~--g~tpL  100 (345)
                      ..++.+-.||+..+.|+|+++-+.   + ..  .+-.+-.-+|...++.+...    ++.++...- ...|..  -..-|
T Consensus        75 ~~q~LFElAC~~qkydiV~WI~qn---L-~i--~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl  147 (192)
T PF03158_consen   75 LNQELFELACEEQKYDIVKWIGQN---L-HI--YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHL  147 (192)
T ss_pred             HHHHHHHHHHHHccccHHHHHhhc---c-CC--CCchhhhhhhhhccchhHHHHHHHHHHhhcccc-cccCHHHHHHHHH
Confidence            467889999999999999998432   2 11  22234567788887776522    222221111 000000  01246


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhh
Q 043760          101 HLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTT  174 (345)
Q Consensus       101 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  174 (345)
                      ..|+..|-...+...+++|.+                        ++      .++|-.|+.+.+..++.+++.
T Consensus       148 ~~a~~kgll~F~letlkygg~------------------------~~------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  148 EKAAAKGLLPFVLETLKYGGN------------------------VD------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHCCCHHHHHHHHHcCCc------------------------cc------HHHHHHHHHhhHHHHHHHhhc
Confidence            789999999999999998877                        22      279999999999999998875

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	345
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-11
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		6e-08
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-09
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-09
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-06
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-09
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		5e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-09
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		7e-09
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-05
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-09
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-06
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		8e-09
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		9e-09
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		9e-09
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-06
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-08
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-08
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-07
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-08
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-07
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-08
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-08
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		6e-05
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		5e-08
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-05
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		5e-08
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-05
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-08
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-07
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-08
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-07
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-07
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-07
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-07
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-06
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-07
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-07
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		3e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		3e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-05
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		4e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		8e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		8e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		8e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		4e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		7e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 26/150 (17%)
Query: 28  SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
             TPLH+AA  GH +  K +L     +  + D    + LH+A++ G++ +VK LL+   D
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 88  KCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLN 147
             +  D +GR PLHLAA  GH++V++ L+ A  D                        +N
Sbjct: 61  -VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------------------------VN 95
Query: 148 AKDDYGMTILLLAVADKQIEAIKFLTTSTA 177
           AKD  G T L LA  +  +E +K L  + A
Sbjct: 96  AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 25  NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
           +   +TPLH+AA +GH +   E+L +       LD   S+ LH+A+++G++ IV+ LL+ 
Sbjct: 44  DTYGDTPLHLAARVGHLEIV-EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 85  IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
             D  +D D  G  PLHLAA  GH++++E L++   D
Sbjct: 103 GADVNAD-DTIGSTPLHLAADTGHLEIVEVLLKYGAD 138

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 27/159 (16%)
Query: 35  AALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
           AA  G +D  + ++     +  E D+   + LH+A++ G++ IV+ LL+   D  +  D 
Sbjct: 21  AARAGQDDEVRILMANGADVNAE-DTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDF 78
Query: 95  DGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM 154
            G  PLHLAA RGH++++E L++   D                        +NA D  G 
Sbjct: 79  SGSTPLHLAAKRGHLEIVEVLLKYGAD------------------------VNADDTIGS 114
Query: 155 TILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
           T L LA     +E ++ L    A +VNA    G TA+DI
Sbjct: 115 TPLHLAADTGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI 152

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 87/178 (48%), Gaps = 31/178 (17%)
Query: 35  AALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
           AA  G +D  + ++     +  E DS K+  LH+A+ KG++ IV+ LL+   D  +  D 
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTP-LHLAAIKGHLEIVEVLLKHGAD-VNAADK 78
Query: 95  DGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM 154
            G  PLHLAA+ GH++++                     EVLL+N  D   +NA D YG 
Sbjct: 79  MGDTPLHLAALYGHLEIV---------------------EVLLKNGAD---VNATDTYGF 114
Query: 155 TILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRR 212
           T L LA     +E ++ L    A +VNA    G TA+DI      D  + D  E+L++
Sbjct: 115 TPLHLAADAGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI----SIDNGNEDLAEILQK 167

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH+AA  GH +  + +L     +  + DS   + LH+A+++G++ IV+ LL+   D  
Sbjct: 49  TPLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLHLAARRGHLEIVEVLLKNGAD-V 106
Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
           + +D  G  PLHLAA RGH++++E L++   D
Sbjct: 107 NASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD 138

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 16/113 (14%)
Query: 93  DVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS------------TEVLLENM 140
           D  G  PLHLAA  GH++++E L++   D  +   + V               EVLL+N 
Sbjct: 44  DFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNG 103
Query: 141 GDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
            D   +NA D +G T L LA     +E ++ L  + A +VNA    G TA+DI
Sbjct: 104 AD---VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA-DVNAQDKFGKTAFDI 152

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH+AA  GH +   E+L +        D+  S+ LH+A+  G++ IV+ LL+   D  
Sbjct: 49  TPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
           +  D +G  PLHLAA RGH++++E L++   D
Sbjct: 108 AKDD-NGITPLHLAANRGHLEIVEVLLKYGAD 138

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 20/116 (17%)
Query: 92  TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGST--------------EVLL 137
            DV G  PLHLAA  GH++++E L++   D  +   +  GST              EVLL
Sbjct: 43  ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL--GSTPLHLAAHFGHLEIVEVLL 100
Query: 138 ENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
           +N  D   +NAKDD G+T L LA     +E ++ L    A +VNA    G TA+DI
Sbjct: 101 KNGAD---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI 152

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH+AA  GH +   E+L +        D    + LH+A+++G++ IV+ LL+   D  
Sbjct: 49  TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-V 106
Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
           +  D DG  PLHLAA  GH++++E L++A  D
Sbjct: 107 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 16/113 (14%)
Query: 93  DVDGRNPLHLAAMRGHIDVLEELVRAKPDAA------------STRLIWVGSTEVLLENM 140
           D DG  PLHLAA  GH++++E L++A  D              + R   +   EVLL+  
Sbjct: 44  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 103
Query: 141 GDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
            D   +NAKD  G T L LA  +  +E ++ L  + A +VNA    G TA+DI
Sbjct: 104 AD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAQDKFGKTAFDI 152

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH+AA  GH +  K +L     +  + D    + LH+A++ G++ +VK LL+   D  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD-V 61
Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRA 118
           +  D +GR PLHLAA  GH++V++ L+ A
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 25/114 (21%)
Query: 64  SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAA 123
           + LH+A++ G++ +VK LL+   D  +  D +GR PLHLAA  GH++V++ L+ A  D  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-- 60
Query: 124 STRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTA 177
                                 +NAKD  G T L LA  +  +E +K L  + A
Sbjct: 61  ----------------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 29/121 (23%)
Query: 95  DGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM 154
           +GR PLHLAA  GH++V++ L+ A  D                        +NAKD  G 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD------------------------VNAKDKNGR 36
Query: 155 TILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAG 214
           T L LA  +  +E +K L  + A +VNA   NG T   + A++       +  +LL  AG
Sbjct: 37  TPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGH----LEVVKLLLEAG 91
Query: 215 A 215
           A
Sbjct: 92  A 92

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH+AA  GH +   E+L +        D    + LH+A+++G++ IV+ LL+   D  
Sbjct: 37  TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-V 94
Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
           +  D DG  PLHLAA  GH++++E L++A  D
Sbjct: 95  NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 20/133 (15%)
Query: 93  DVDGRNPLHLAAMRGHIDVLEELVRAKPDAA------------STRLIWVGSTEVLLENM 140
           D DG  PLHLAA  GH++++E L++A  D              + R   +   EVLL+  
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 141 GDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRD 200
            D   +NAKD  G T L LA  +  +E ++ L  + A +VNA    G T +D+      D
Sbjct: 92  AD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAQDKFGKTPFDLAI----D 143
Query: 201 IKDWDTGELLRRA 213
             + D  E+L++A
Sbjct: 144 NGNEDIAEVLQKA 156

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 27  LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
           L  TPLH+AA  GH +   E+L +        D+  ++ LH+A+  G++ IV+ LL+   
Sbjct: 46  LGHTPLHLAAKTGHLEIV-EVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA 104
Query: 87  DKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
           D  +  D +G  PLHLAA  GH++++E L++   D
Sbjct: 105 D-VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD 138

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 24/118 (20%)
Query: 92  TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIW--VGST--------------EV 135
           TD  G  PLHLAA  GH++++E L++   D  +    W   G+T              EV
Sbjct: 43  TDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNA----WDNYGATPLHLAADNGHLEIVEV 98
Query: 136 LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
           LL++  D   +NAKD  G T L LA  D  +E ++ L    A +VNA    G TA+DI
Sbjct: 99  LLKHGAD---VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI 152

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 25/212 (11%)
Query: 25  NCLSETPLHVAALLGHEDFAKEILPQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQ 83
           N   ETPLH+AA  GH + AK +L  K ++ A+  D +  + LH A++ G+  +VK LL+
Sbjct: 44  NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ--TPLHCAARIGHTNMVKLLLE 101
Query: 84  VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAK------------PDAASTRLIWVG 131
              +    T   G  PLH+AA  GH++ +  L+  +            P   + +   V 
Sbjct: 102 NNANPNLATTA-GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160
Query: 132 STEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAW 191
             E+LLE        NA    G+T L +AV    ++ +K L        ++   NG+T  
Sbjct: 161 VAELLLERDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYTPL 216
Query: 192 DILA-QSKRDIKDWDTGELLRRAGAISAKDLQ 222
            I A Q++ ++       LL+  G+ +A+ +Q
Sbjct: 217 HIAAKQNQVEVAR----SLLQYGGSANAESVQ 244

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH+AA  GH +   E+L +        D    + LH+A+++G++ IV+ LL+   D  
Sbjct: 37  TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-V 94
Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
           +  D DG  PLHLAA  GH++++E L++A  D
Sbjct: 95  NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 20/133 (15%)
Query: 93  DVDGRNPLHLAAMRGHIDVLEELVRAKPDAA------------STRLIWVGSTEVLLENM 140
           D DG  PLHLAA  GH++++E L++A  D              + R   +   EVLL+  
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 141 GDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRD 200
            D   +NAKD  G T L LA  +  +E ++ L  + A +VNA    G T +D+  +   +
Sbjct: 92  AD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAQDKFGKTPFDLAIREGHE 147
Query: 201 IKDWDTGELLRRA 213
               D  E+L++A
Sbjct: 148 ----DIAEVLQKA 156

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 26/135 (19%)
Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRA 118
           D + S+ LH+A+  G+  IV+ LL+   D  +  D DG  PLHLAA  GH++++E L++ 
Sbjct: 44  DDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 119 KPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAI 178
             D                        +NA+D YG+T L LA     +E ++ L    A 
Sbjct: 103 GAD------------------------VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA- 137
Query: 179 EVNAVTANGFTAWDI 193
           +VNA    G TA+DI
Sbjct: 138 DVNAQDKFGKTAFDI 152

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH+AA  GH +  + +L     +  + DS   + LH+A+ +G++ +V+ LL+   D  
Sbjct: 49  TPLHLAAYFGHLEIVEVLLKNGADVNAD-DSLGVTPLHLAADRGHLEVVEVLLKNGAD-V 106
Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
           +  D +G  PLHLAA  GH++++E L++   D
Sbjct: 107 NANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 30/147 (20%)
Query: 66  LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST 125
           LH+A+  G++ IV+ LL+   D  +D  + G  PLHLAA RGH++V+             
Sbjct: 51  LHLAAYFGHLEIVEVLLKNGADVNADDSL-GVTPLHLAADRGHLEVV------------- 96
Query: 126 RLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTA 185
                   EVLL+N  D   +NA D  G T L LA     +E ++ L    A +VNA   
Sbjct: 97  --------EVLLKNGAD---VNANDHNGFTPLHLAANIGHLEIVEVLLKHGA-DVNAQDK 144
Query: 186 NGFTAWDILAQSKRDIKDWDTGELLRR 212
            G TA+DI      D  + D  E+L++
Sbjct: 145 FGKTAFDI----SIDNGNEDLAEILQK 167

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
Query: 28  SETPLHVAALLGHEDFAKEILPQ--KPRIAEELDSRKSSALHIASQKGYVGIVKALLQVI 85
            +TPLH+AA  GH++  K +L Q   P      DS   + LH+A++ G+  +VK LL   
Sbjct: 37  GKTPLHLAAENGHKEVVKLLLSQGADPNAK---DSDGKTPLHLAAENGHKEVVKLLLSQG 93
Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
            D  +  D DG+ PLHLAA  GH +V++ L+    D
Sbjct: 94  ADPNA-KDSDGKTPLHLAAENGHKEVVKLLLSQGAD 128

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 27/159 (16%)
Query: 35  AALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
           AA  G++D  K++L     +    DS   + LH+A++ G+  +VK LL    D  +  D 
Sbjct: 11  AAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGADPNA-KDS 68
Query: 95  DGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM 154
           DG+ PLHLAA  GH +V++ L+    D                         NAKD  G 
Sbjct: 69  DGKTPLHLAAENGHKEVVKLLLSQGADP------------------------NAKDSDGK 104
Query: 155 TILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
           T L LA  +   E +K L +  A + N   ++G T  D+
Sbjct: 105 TPLHLAAENGHKEVVKLLLSQGA-DPNTSDSDGRTPLDL 142

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 82/177 (46%), Gaps = 31/177 (17%)
Query: 35  AALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
           AA  G +D  + IL      A   D    + LH+A+  G++ IV+ LL+   D  +  D 
Sbjct: 9   AARAGQDDEVR-ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD-VNAVDT 66
Query: 95  DGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM 154
           +G  PLHLAA  GH++++E L++   D                        +NAKD  G+
Sbjct: 67  NGTTPLHLAASLGHLEIVEVLLKYGAD------------------------VNAKDATGI 102
Query: 155 TILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLR 211
           T L LA     +E ++ L    A +VNA    G TA+DI      DI + D  E+L+
Sbjct: 103 TPLYLAAYWGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI----SIDIGNEDLAEILQ 154

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH+AA  GH +   E+L +       +D    + L +A+  G++ IV+ LL+   D  
Sbjct: 49  TPLHLAAFNGHLEIV-EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-V 106
Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
           +  D++G  PLHLAAM GH++++E L++   D
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 93  DVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST--------RLIWVGS----TEVLLENM 140
           D  G  PLHLAA  GH++++E L++   D  +         RL  +       EVLL+N 
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103
Query: 141 GDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRD 200
            D   +NA D  G T L LA     +E ++ L  + A +VNA    G TA+DI      D
Sbjct: 104 AD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKFGKTAFDI----SID 155
Query: 201 IKDWDTGELLRR 212
             + D  E+L++
Sbjct: 156 NGNEDLAEILQK 167

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH+AA  GH +  + +L     +   +D   S+ LH+A+  G++ IV+ LL+   D  
Sbjct: 49  TPLHLAATYGHLEIVEVLLKHGADV-NAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD-V 106
Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
           +  D  G  PLHLAA+ GH++++E L++   D
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 24/135 (17%)
Query: 92  TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGST--------------EVLL 137
           TD  G  PLHLAA  GH++++E L++   D  +  ++  GST              EVLL
Sbjct: 43  TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM--GSTPLHLAALIGHLEIVEVLL 100
Query: 138 ENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQS 197
           ++  D   +NA D +G T L LA     +E ++ L    A +VNA    G TA+DI    
Sbjct: 101 KHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI---- 152
Query: 198 KRDIKDWDTGELLRR 212
             D  + D  E+L++
Sbjct: 153 SIDNGNEDLAEILQK 167

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH+AA  GH +  + +L     +   +D   S+ LH+A+  G++ IV+ LL+   D  
Sbjct: 49  TPLHLAATYGHLEIVEVLLKHGADV-NAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD-V 106
Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
           +  D  G  PLHLAA+ GH++++E L++   D
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 24/135 (17%)
Query: 92  TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGST--------------EVLL 137
           TD  G  PLHLAA  GH++++E L++   D  +  +   GST              EVLL
Sbjct: 43  TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI--XGSTPLHLAALIGHLEIVEVLL 100
Query: 138 ENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQS 197
           ++  D   +NA D +G T L LA     +E ++ L    A +VNA    G TA+DI    
Sbjct: 101 KHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI---- 152
Query: 198 KRDIKDWDTGELLRR 212
             D  + D  E+L++
Sbjct: 153 SIDNGNEDLAEILQK 167

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 17  LILERPTVNCLSET---PLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKG 73
           LI     VN +  T   PLH+AA+ GH +  + +L     + +  D    + LH+A+  G
Sbjct: 33  LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTG 91
Query: 74  YVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
           ++ IV+ LL+   D  +  D+ G  PLHLAA  GH++++E L++   D
Sbjct: 92  HLEIVEVLLKYGAD-VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 27/159 (16%)
Query: 35  AALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
           AA  G +D  + ++     +   +D+   + LH+A+  G++ IV+ LL+   D     DV
Sbjct: 21  AARAGQDDEVRILIANGADV-NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADV 78
Query: 95  DGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM 154
            G  PLHLAAM GH++++E L++   D                        +NA D  G 
Sbjct: 79  YGFTPLHLAAMTGHLEIVEVLLKYGAD------------------------VNAFDMTGS 114
Query: 155 TILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
           T L LA  +  +E ++ L    A +VNA    G TA+DI
Sbjct: 115 TPLHLAADEGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI 152

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 30  TPLHVAALLGHEDFAKEILPQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           TPLH AA  GH++  K ++ +   + A++ D R  + LH A+++G+  IVK L+    D 
Sbjct: 39  TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR--TPLHYAAKEGHKEIVKLLISKGAD- 95
Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST 125
            +  D DGR PLH AA  GH ++++ L+    D  ++
Sbjct: 96  VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS 132

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 29/160 (18%)
Query: 35  AALLGHEDFAKEILPQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTD 93
           AA  G++D  K+++     + A + D R  + LH A+++G+  IVK L+    D  +  D
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGR--TPLHYAAKEGHKEIVKLLISKGAD-VNAKD 67
Query: 94  VDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYG 153
            DGR PLH AA  GH ++++ L+    D                        +NAKD  G
Sbjct: 68  SDGRTPLHYAAKEGHKEIVKLLISKGAD------------------------VNAKDSDG 103
Query: 154 MTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
            T L  A  +   E +K L +  A +VN   ++G T  D+
Sbjct: 104 RTPLHYAAKEGHKEIVKLLISKGA-DVNTSDSDGRTPLDL 142

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 26/128 (20%)
Query: 66  LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST 125
           LH+    G++ I++ LL+   D  + +D  G  PLHLAA RGH++++E L++   D    
Sbjct: 51  LHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD---- 105
Query: 126 RLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTA 185
                               +NA D  G T L LA  D  +E ++ L    A +VNA   
Sbjct: 106 --------------------VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA-DVNAQDK 144
Query: 186 NGFTAWDI 193
            G TA+DI
Sbjct: 145 FGKTAFDI 152

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 26/135 (19%)
Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRA 118
           D+  ++ LH+A+  G++ IV+ LL+   D    +DV G  PLHLAA  GH++++      
Sbjct: 44  DNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIV------ 96
Query: 119 KPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAI 178
                          EVLL+N  D   +NA D  GMT L LA     +E ++ L    A 
Sbjct: 97  ---------------EVLLKNGAD---VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA- 137
Query: 179 EVNAVTANGFTAWDI 193
           +VNA    G TA+DI
Sbjct: 138 DVNAQDKFGKTAFDI 152

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH AA  GH++  K +L  K       DS   + LH A++ G+  IVK LL    D  
Sbjct: 39  TPLHYAAENGHKEIVK-LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 97
Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
           +  D DGR PLH AA  GH ++++ L+    D
Sbjct: 98  A-KDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 31/161 (19%)
Query: 35  AALLGHEDFAKEILPQ--KPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDT 92
           AA  G++D  K++L     P  +   DS   + LH A++ G+  IVK LL    D  +  
Sbjct: 11  AAENGNKDRVKDLLENGADPNAS---DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA-K 66
Query: 93  DVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDY 152
           D DGR PLH AA  GH ++++ L+    D                         NAKD  
Sbjct: 67  DSDGRTPLHYAAENGHKEIVKLLLSKGADP------------------------NAKDSD 102
Query: 153 GMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
           G T L  A  +   E +K L +  A + N   ++G T  D+
Sbjct: 103 GRTPLHYAAENGHKEIVKLLLSKGA-DPNTSDSDGRTPLDL 142

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH+AA  GH +   E+L +        D    + LH+A+  G++ IV+ LL+   D  
Sbjct: 49  TPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD-V 106
Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
           +  D DG  PLHLAA  GH++++E L++   D
Sbjct: 107 NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 16/114 (14%)
Query: 92  TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS------------TEVLLEN 139
           TD DG  PLHLAA  GH++++E L++   D  ++ L  +               EVLL++
Sbjct: 43  TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 140 MGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
             D   +NA D+ G T L LA     +E ++ L    A +VNA    G TA+DI
Sbjct: 103 GAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI 152

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 29/160 (18%)
Query: 35  AALLGHEDFAKEILPQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTD 93
           AA  G++D  K+++     + A + D R  + LH A++ G+  +VK L+    D  +  D
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGR--TPLHHAAENGHKEVVKLLISKGAD-VNAKD 67
Query: 94  VDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYG 153
            DGR PLH AA  GH +V++ L+    D                        +NAKD  G
Sbjct: 68  SDGRTPLHHAAENGHKEVVKLLISKGAD------------------------VNAKDSDG 103
Query: 154 MTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
            T L  A  +   E +K L +  A +VN   ++G T  D+
Sbjct: 104 RTPLHHAAENGHKEVVKLLISKGA-DVNTSDSDGRTPLDL 142

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 17/125 (13%)
Query: 92  TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS------------TEVLLEN 139
           TD +G  PLHLAA  G ++++E L++   D  ++    +               EVLL++
Sbjct: 35  TDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 140 MGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI-LAQSK 198
             D   +NA D  G T L LA    Q+E ++ L    A +VNA  A G TA+DI + Q +
Sbjct: 95  GAD---VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA-DVNAQDALGLTAFDISINQGQ 150
Query: 199 RDIKD 203
            D+ +
Sbjct: 151 EDLAE 155

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 58  LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR 117
           +D    + LH+A+++G++ IV+ LL+   D  + +D+ GR PLHLAA  GH++++E L+ 
Sbjct: 43  MDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 118 AKPD 121
              D
Sbjct: 102 YGAD 105

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 32/175 (18%)
Query: 25  NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ- 83
           N L +TPLH+A +    + A+ +L       E  D R ++ LH+A ++G +  V  L Q 
Sbjct: 39  NNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQS 97
Query: 84  -VIPDKCS---DTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLEN 139
              P   S    T+ +G   LHLA++ G++ ++E LV    D                  
Sbjct: 98  CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD------------------ 139
Query: 140 MGDFELLNAKDDY-GMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
                 +NA++   G T L LAV  +  + +  L    A +VN VT  G++ + +
Sbjct: 140 ------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA-DVNRVTYQGYSPYQL 187

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 52/185 (28%)
Query: 25  NCLSETPLHVAALLGHEDFAKEILPQKPRIAEEL----------DSRKSSALHIASQKGY 74
           N L +TPLH+A           ++  +P IAE L          D R ++ LH+A ++G 
Sbjct: 42  NNLQQTPLHLA-----------VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGC 90
Query: 75  VGIVKALLQ--VIPDKCS---DTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIW 129
           +  V  L Q    P   S    T+ +G   LHLA++ G++ ++E LV    D        
Sbjct: 91  LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-------- 142
Query: 130 VGSTEVLLENMGDFELLNAKDDY-GMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGF 188
                           +NA++   G T L LAV  +  + +  L    A +VN VT  G+
Sbjct: 143 ----------------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA-DVNRVTYQGY 185
Query: 189 TAWDI 193
           + + +
Sbjct: 186 SPYQL 190

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 25/101 (24%)
Query: 93  DVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDY 152
           D DG  PLHLAA  GH++++E L++   D                        +NA+D++
Sbjct: 44  DEDGLTPLHLAAQLGHLEIVEVLLKYGAD------------------------VNAEDNF 79
Query: 153 GMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
           G+T L LA     +E ++ L    A +VNA    G TA+DI
Sbjct: 80  GITPLHLAAIRGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI 119

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 58  LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR 117
           +D    + LH+A+++G++ IV+ LL+   D  +  D+ GR PLHLAA  GH++++E L+ 
Sbjct: 43  MDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 118 AKPD 121
              D
Sbjct: 102 YGAD 105

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 27/187 (14%)
Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ----VI 85
           +PLH AA  GH D    ++     I +     + + L  A++  ++  VK L++    V 
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEEL-------VRAKPDAASTRLIW------VGS 132
           P      D +G   LHLAA +GH +V++ L       V  + D   T +IW      V  
Sbjct: 72  P-----KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDL 126
Query: 133 TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWD 192
            ++LL    D   +N +D+     L  A     ++  + L  +   +++AV  +G +   
Sbjct: 127 VKLLLSKGSD---INIRDNEENICLHWAAFSGCVDIAEILLAAKC-DLHAVNIHGDSPLH 182
Query: 193 ILAQSKR 199
           I A+  R
Sbjct: 183 IAARENR 189

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 58  LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR 117
           +D    + LH+A+++G++ IV+ LL+   D  + +D  GR PLHLAA  GH++++E L+ 
Sbjct: 43  MDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Query: 118 AKPD 121
              D
Sbjct: 102 YGAD 105

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 25/98 (25%)
Query: 96  GRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMT 155
           G  PLHLAA RGH++++E L++   D                        +NA D +G T
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGAD------------------------VNASDSWGRT 82
Query: 156 ILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
            L LA     +E ++ L    A +VNA    G TA+DI
Sbjct: 83  PLHLAATVGHLEIVEVLLEYGA-DVNAQDKFGKTAFDI 119

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 31/172 (18%)
Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALL--QVIPD 87
           +PLHVAAL G  D    +L      A   ++ ++  LH+A Q+G+  +VK LL     P+
Sbjct: 88  SPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN 146
Query: 88  KCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLN 147
           K    D+ G  PL  A   GH     ELV          L+  G++            +N
Sbjct: 147 K---KDLSGNTPLIYACSGGH----HELV--------ALLLQHGAS------------IN 179
Query: 148 AKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKR 199
           A ++ G T L  AV +K +  ++ L    A  V  +     TA D   Q+ +
Sbjct: 180 ASNNKGNTALHEAVIEKHVFVVELLLLHGA-SVQVLNKRQRTAVDCAEQNSK 230

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 28  SETPLHVAALLGHEDFAKEILPQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
             TPLH AA  GH +  K++L +   + A   D   ++ LH+A++ G+  IVK LL    
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG--NTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 87  DKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
           D  +    DG  P HLA   GH ++++ L
Sbjct: 67  D-VNARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRA 118
           D + ++ LH+A+   ++ IV+ LL+   D  +  D DG  PLHLAA+ GH++++E L++ 
Sbjct: 44  DRKGNTPLHLAADYDHLEIVEVLLKHGAD-VNAHDNDGSTPLHLAALFGHLEIVEVLLKH 102
Query: 119 KPD 121
             D
Sbjct: 103 GAD 105

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 9/87 (10%)
Query: 135 VLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDIL 194
           +L+ N  D   +NAKD+YG+T L LA A   +E ++ L  + A +VNAV A GFT   + 
Sbjct: 32  ILMANGAD---VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA-DVNAVDAIGFTPLHLA 87
Query: 195 AQSKRDIKDWDTGELLRRAGA-ISAKD 220
           A     I   +  E+L + GA ++A+D
Sbjct: 88  AF----IGHLEIAEVLLKHGADVNAQD 110

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 21/170 (12%)
Query: 26  CLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV- 84
           C+S   +   A  G  D  KE +     +A   D    +ALH A   G+  IV+ LLQ+ 
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 85  IPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL------VRAKPDAASTRLIWVGSTE---- 134
           +P   +D D  G +PLH+AA  G  ++++ L      V A      T L +  S      
Sbjct: 64  VP--VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI 121
Query: 135 --VLLENMGDFELLNAKDDYGMTILLLAVAD---KQIEAIKFLTTSTAIE 179
             +LLE   + +   AKD Y  T +  A A    K +  + F   ST I+
Sbjct: 122 AVMLLEGGANPD---AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	345
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-21
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-24
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-20
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-22
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-22
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-22
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-22
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-22
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-21
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-20
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-20
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-06
2rfa_A	232	Transient receptor potential cation channel subfa	1e-20
2rfa_A	232	Transient receptor potential cation channel subfa	2e-12
2rfa_A	232	Transient receptor potential cation channel subfa	1e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-20
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-13
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-20
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-08
2etb_A	256	Transient receptor potential cation channel subfam	3e-19
2etb_A	256	Transient receptor potential cation channel subfam	5e-14
2etb_A	256	Transient receptor potential cation channel subfam	1e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-19
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-04
2pnn_A	273	Transient receptor potential cation channel subfa	7e-15
2pnn_A	273	Transient receptor potential cation channel subfa	6e-14
2pnn_A	273	Transient receptor potential cation channel subfa	6e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-04

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 96.7 bits (242), Expect = 2e-24
 Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 17/172 (9%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
             +H  A  G  D  KE L +   +  + D R  + L  AS  G +  V+ LL+   D  
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAS----TRLIWV---GSTEV---LL 137
                +  + L LA+  G+ D++  L+      +       T L++       +    LL
Sbjct: 64  I-LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL 122

Query: 138 ENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFT 189
               D   L  + D G T + LAVA    +  + +      ++         
Sbjct: 123 ARGAD---LTTEADSGYTPMDLAVALGYRKVQQVIENHIL-KLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 87.9 bits (219), Expect = 4e-21
 Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 21/169 (12%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDA 122
           ++H  + +G +  +K  L+   +  +  D  G  PL  A+  G I+ +  L+   A P  
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 123 A----STRLIWV---GSTEV---LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFL 172
                 + L      G T++   LLE   D   +N  D  G T LL AV    ++ ++ L
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 173 TTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGA-ISAKD 220
               A ++     +G+T  D+              +++      +   +
Sbjct: 122 LARGA-DLTTEADSGYTPMDLAVALGYR----KVQQVIENHILKLFQSN 165

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 74.4 bits (184), Expect = 3e-16
 Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 26/127 (20%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           E+ L +A+  G+ D    +L +   I    D    + L  A +  +V  V+ALL    D 
Sbjct: 70  ESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
            +     G  P+ LA   G+  V                      +V+  ++     L  
Sbjct: 129 -TTEADSGYTPMDLAVALGYRKV---------------------QQVIENHILK---LFQ 163

Query: 149 KDDYGMT 155
            +     
Sbjct: 164 SNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 56.7 bits (138), Expect = 6e-10
 Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 17/108 (15%)

Query: 96  GRNPLHLAAMRGHIDVLEELVRA---KPDAA----STRLIW---VGSTEV---LLENMGD 142
               +H  A +G +D L+E +R      +       T LIW    G  E    LLE   D
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 143 FELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
               +       + L LA      + +  L      ++N    NG T 
Sbjct: 62  ---PHILAKERESALSLASTGGYTDIVGLLLERDV-DINIYDWNGGTP 105

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 98.3 bits (246), Expect = 2e-24
 Identities = 40/180 (22%), Positives = 63/180 (35%), Gaps = 19/180 (10%)

Query: 27  LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
           +S  PLH A +       +E+L  KP +  + D      LH +       I   LL  + 
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 87  D--KCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAA--------STRLIWV---GST 133
           +       D  G  P H+A   G+++V++ L                 T L         
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120

Query: 134 EV---LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
           EV   L+EN      +  KD +    L  A +   ++ I+ L       VN     G+T 
Sbjct: 121 EVSQFLIENGAS---VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 86.3 bits (215), Expect = 6e-20
 Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 31/166 (18%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
            TP H+A  +G+ +  K +  +  +    ++ ++  + LH+A  K +  + + L+    +
Sbjct: 73  WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI----E 128

Query: 88  KCSD---TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFE 144
             +     D   + PLH AA  G + ++E L              +G + V         
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELL------------CGLGKSAV--------- 167

Query: 145 LLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
             N +D  G T L  A+A+   +A   L      E + V   G  A
Sbjct: 168 --NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 77.1 bits (191), Expect = 9e-17
 Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 29/145 (20%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            T LH+A      + ++ ++     +    D      LH A+  G + +++ L  +    
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA 166

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMG-DFELLN 147
            +  D  G  PL  A   GH D                        +L+E  G +    +
Sbjct: 167 VNWQDKQGWTPLFHALAEGHGDA---------------------AVLLVEKYGAE---YD 202

Query: 148 AKDDYGMTILLLAVADKQIEAIKFL 172
             D+ G     +A+     +  KF 
Sbjct: 203 LVDNKGAKAEDVAL---NEQVKKFF 224

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  101 bits (253), Expect = 4e-24
 Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 23/205 (11%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +TPLH AA +GH +  K +L           +   + LHIA+++G+V  V ALL+    +
Sbjct: 81  QTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAS----TRLIW---VGSTEV---L 136
            +     G  PLH+AA  G + V E L+   A P+AA     T L       + ++   L
Sbjct: 140 -ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

Query: 137 LENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ 196
           L   G     ++    G T L +A    Q+E  + L        NA +  G T   + AQ
Sbjct: 199 LPRGGS---PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG-SANAESVQGVTPLHLAAQ 254

Query: 197 SKRDIKDWDTGELLRRAGA-ISAKD 220
                   +   LL    A  +  +
Sbjct: 255 EGHA----EMVALLLSKQANGNLGN 275

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 99.5 bits (249), Expect = 2e-23
 Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 21/182 (11%)

Query: 24  VNCLSE---TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKA 80
                E   TPLHVA+ +GH    K +L +        + +  + LH+A++ G+  + K 
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKY 65

Query: 81  LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAS----TRLIWV---G 131
           LLQ      +    D + PLH AA  GH ++++ L+   A P+ A+    T L      G
Sbjct: 66  LLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREG 124

Query: 132 STEV---LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGF 188
             E    LLE              G T L +A    ++   + L    A   NA   NG 
Sbjct: 125 HVETVLALLEKEAS---QACMTKKGFTPLHVAAKYGKVRVAELLLERDA-HPNAAGKNGL 180

Query: 189 TA 190
           T 
Sbjct: 181 TP 182

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 99.1 bits (248), Expect = 2e-23
 Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 18/174 (10%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           ETPLH+AA  GH + AK +L  K ++         + LH A++ G+  +VK LL+   + 
Sbjct: 48  ETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 106

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAS----TRLIWV---GSTEV---L 136
            +     G  PLH+AA  GH++ +  L+   A     +    T L      G   V   L
Sbjct: 107 -NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165

Query: 137 LENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
           LE        NA    G+T L +AV    ++ +K L        ++   NG+T 
Sbjct: 166 LERDAH---PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYTP 215

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 95.3 bits (238), Expect = 5e-22
 Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 24/176 (13%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLHVAA  G    A+ +L +             + LH+A     + IVK LL     + 
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLL----PRG 202

Query: 90  SD---TDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAS----TRLIWV---GSTEV-- 135
                   +G  PLH+AA +  ++V   L++     +A S    T L      G  E+  
Sbjct: 203 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 262

Query: 136 -LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
            LL    +    N  +  G+T L L   +  +     L       V+A T  G+T 
Sbjct: 263 LLLSKQAN---GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV-MVDATTRMGYTP 314

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 93.7 bits (234), Expect = 2e-21
 Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 24/177 (13%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPLH+AA     + A+ +L            +  + LH+A+Q+G+  +V  LL     K
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLL----SK 267

Query: 89  CSD---TDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAS----TRLIWV---GSTEV- 135
            ++    +  G  PLHL A  GH+ V + L++     DA +    T L      G+ ++ 
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 327

Query: 136 --LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
             LL++  D   +NAK   G + L  A      + +  L  + A   N V+++G T 
Sbjct: 328 KFLLQHQAD---VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA-SPNEVSSDGTTP 380

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 89.1 bits (222), Expect = 7e-20
 Identities = 38/167 (22%), Positives = 58/167 (34%), Gaps = 28/167 (16%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPLH+ A  GH   A  ++     + +       + LH+AS  G + +VK LLQ   D 
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
            +     G +PLH AA +GH D++  L++                             N 
Sbjct: 338 -NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS------------------------PNE 372

Query: 149 KDDYGMTILLLAVADKQIEAIKFLTTSTA--IEVNAVTANGFTAWDI 193
               G T L +A     I     L   T     V     +  +  + 
Sbjct: 373 VSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPET 419

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 96.0 bits (240), Expect = 5e-23
 Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 34/203 (16%)

Query: 29  ETPLHVAALLGHEDFAK---------EILPQKPRIAEELDSRKSSALHIASQKGYVGIVK 79
            T    AA+ G     K          +  +     E L    ++AL  A++KG+V ++K
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

Query: 80  ALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLEN 139
            LL  +    +  D  GRN L  A +      +E +                   +LL++
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT-----------------HLLLDH 208

Query: 140 MGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKR 199
             D   +N + + G T L+LAV  K +  ++ L     IE+N   ++G TA  +  + K 
Sbjct: 209 GAD---VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL 265

Query: 200 DIKDWDTGELLRRAGA-ISAKDL 221
                   ELL + GA     DL
Sbjct: 266 K----KIAELLCKRGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 93.3 bits (233), Expect = 4e-22
 Identities = 43/212 (20%), Positives = 69/212 (32%), Gaps = 21/212 (9%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              L  A      D  +++L     +  + +    + LH A Q     IV+ LL+   D 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAS----TRLIWV---GSTEV---L 136
                 +G  P  LAA+ G + +L+  +   A  +       T  +     G  +    L
Sbjct: 66  VL-RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 137 LEN-------MGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFT 189
            +            E        G T L+ A     +E +K L      +VNA    G  
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 190 AWDILAQSKRDIKDWDTGELLRRAGA-ISAKD 220
           A      S  D        LL   GA ++ + 
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRG 216

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 58.3 bits (142), Expect = 7e-10
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 17/111 (15%)

Query: 93  DVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAS-----TRLIW---VGSTEV---LLEN 139
            V+  + L  A     +D++++L+   A  +        T L     +   ++   LL +
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 140 MGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
             D      +   G T  LLA     ++ +K   +  A +VN     GFTA
Sbjct: 62  GAD---PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA-DVNECDFYGFTA 108

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 92.8 bits (232), Expect = 5e-23
 Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 32/193 (16%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              +H  A  G   +    + Q+  I    D    + L  A+  G + +V+ LLQ   D 
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
                    + L LA  +G+ D+++ L+    D                        +N 
Sbjct: 63  QL-LGKGRESALSLACSKGYTDIVKMLLDCGVD------------------------VNE 97

Query: 149 KDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGE 208
            D  G T LL AV    ++ +K L  S A +    T +G+ + D+              +
Sbjct: 98  YDWNGGTPLLYAVHGNHVKCVKMLLESGA-DPTIETDSGYNSMDLAVALGYR----SVQQ 152

Query: 209 LLRRAGA-ISAKD 220
           ++      +    
Sbjct: 153 VIESHLLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 56.6 bits (138), Expect = 5e-10
 Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 16/108 (14%)

Query: 95  DGRNPLHLAAMRGHIDVLEELVR--AKPDAA----STRLIW---VGSTEV---LLENMGD 142
                +H  A +G +  L   +      +       T L+W    G   V   LL+N  D
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 143 FELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
                       + L LA +    + +K L      +VN    NG T 
Sbjct: 62  ---PQLLGKGRESALSLACSKGYTDIVKMLLDCGV-DVNEYDWNGGTP 105

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 94.1 bits (235), Expect = 1e-22
 Identities = 39/203 (19%), Positives = 72/203 (35%), Gaps = 25/203 (12%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +TPLH+A +       + ++         LD    +A H+A +      ++ALL      
Sbjct: 47  QTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPG 105

Query: 89  CSD---TDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAA-----STRLIWV---GSTEV 135
             D    + DG   LH+A      + ++ L+   A  DA       + LI      S  +
Sbjct: 106 TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM 165

Query: 136 ---LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWD 192
              LL++  +   +NA+   G + L  A     +  ++ L  S A + +    +  T   
Sbjct: 166 VQLLLQHGAN---VNAQMYSGSSALHSASGRGLLPLVRTLVRSGA-DSSLKNCHNDTPLM 221

Query: 193 ILAQSKRDIKDWDTGELLRRAGA 215
           +    +      D         A
Sbjct: 222 VARSRRVI----DILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 80.2 bits (199), Expect = 9e-18
 Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 25/182 (13%)

Query: 29  ETPLHVAALLGHEDFAK---EILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVI 85
           +TPLH+A + G+         +  Q  R  +  ++ + + LH+A       +V+ L+   
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69

Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR----------AKPDAASTRLIWV---GS 132
                  D  G+   HLA        L  L+           A+     T L        
Sbjct: 70  ASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128

Query: 133 TEV---LLENMGDFELLNAKD-DYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGF 188
            E    LLE   D   ++A D   G + L+ AV +  +  ++ L    A  VNA   +G 
Sbjct: 129 QETVQLLLERGAD---IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA-NVNAQMYSGS 184

Query: 189 TA 190
           +A
Sbjct: 185 SA 186

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 74.0 bits (183), Expect = 2e-15
 Identities = 31/143 (21%), Positives = 48/143 (33%), Gaps = 30/143 (20%)

Query: 54  IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSD---TDVDGRNPLHLAAMRGHID 110
           +A   D    + LHIA  +G +  V  L+ +      +    +   + PLHLA +     
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 111 VLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIK 170
           V+  LV A                             A D +G T   LA   +    ++
Sbjct: 61  VVRLLVTAGAS------------------------PMALDRHGQTAAHLACEHRSPTCLR 96

Query: 171 FLTTSTAIE---VNAVTANGFTA 190
            L  S A     + A   +G TA
Sbjct: 97  ALLDSAAPGTLDLEARNYDGLTA 119

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 93.2 bits (233), Expect = 1e-22
 Identities = 47/205 (22%), Positives = 73/205 (35%), Gaps = 21/205 (10%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           ET LH+AA     D AK +L          D+   + LH A      G+ + L++     
Sbjct: 26  ETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELV--RAKPDAA----STRLIW---VGSTEV---L 136
                 DG  PL LAA      +LE+L+   A  +A      + L W   V + +    L
Sbjct: 85  LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144

Query: 137 LENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ 196
           L+N  +    + +++   T L LA  +   E  K L        +          DI  +
Sbjct: 145 LKNGAN---KDMQNNREETPLFLAAREGSYETAKVL-LDHFANRDITDHMDRLPRDIAQE 200

Query: 197 SKRDIKDWDTGELLRRAGAISAKDL 221
                   D   LL     + +  L
Sbjct: 201 RMHH----DIVRLLDEYNLVRSPQL 221

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 74.8 bits (185), Expect = 7e-16
 Identities = 43/199 (21%), Positives = 71/199 (35%), Gaps = 29/199 (14%)

Query: 39  GHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSD---TDVD 95
                  + + Q   +  + D    +ALH+A++       K LL    +  +D    D  
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL----EASADANIQDNM 57

Query: 96  GRNPLHLAAMRGHIDVLEELVR-------AKPDAASTRLIWV---GSTEV---LLENMGD 142
           GR PLH A       V + L+R       A+    +T LI         +   L+ +  D
Sbjct: 58  GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 117

Query: 143 FELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIK 202
              +NA DD G + L  A A   ++A   L  + A   +       T   + A+      
Sbjct: 118 ---VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA-NKDMQNNREETPLFLAAREGSY-- 171

Query: 203 DWDTGELLRRAGA-ISAKD 220
             +T ++L    A     D
Sbjct: 172 --ETAKVLLDHFANRDITD 188

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 92.1 bits (230), Expect = 1e-22
 Identities = 36/194 (18%), Positives = 66/194 (34%), Gaps = 31/194 (15%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
             +      G+    +  L        + D    S LH A ++G   +V+ L+       
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI- 65

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAK 149
           +  +     PLHLAA  GH D++++L++ K D                        +NA 
Sbjct: 66  NVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD------------------------INAV 101

Query: 150 DDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGEL 209
           +++G   L  A    Q +  + L  + A  V+     G    D      R+       E 
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVANGA-LVSICNKYGEMPVDKAKAPLRE----LLRER 156

Query: 210 LRRAGA-ISAKDLQ 222
             + G  ++    +
Sbjct: 157 AEKMGQNLNRIPYK 170

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 78.2 bits (194), Expect = 2e-17
 Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 26/144 (18%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            +PLH A   G     + ++ +  RI   ++    + LH+A+  G+  IV+ LLQ   D 
Sbjct: 40  FSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
            +  +  G  PLH A   G   V E+LV                             ++ 
Sbjct: 99  -NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL------------------------VSI 133

Query: 149 KDDYGMTILLLAVADKQIEAIKFL 172
            + YG   +  A A  +    +  
Sbjct: 134 CNKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 67.1 bits (165), Expect = 2e-13
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 12/93 (12%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV---- 84
           +TPLH+AA  GH D  +++L  K  I   ++   +  LH A   G   + + L+      
Sbjct: 73  DTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131

Query: 85  -IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELV 116
            I +K       G  P+  A       + E   
Sbjct: 132 SICNK------YGEMPVDKAKAPLRELLRERAE 158

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 54.7 bits (133), Expect = 3e-09
 Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 22/142 (15%)

Query: 93  DVDGRNPLHLAAMRGHIDVLEEL-------VRAKPDAASTRLIWV---GSTEV---LLEN 139
             +  + +      G+   +          +    D   + L W    G + V   L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 140 MGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKR 199
                 +N  +    T L LA +    + ++ L    A ++NAV  +G           +
Sbjct: 62  GAR---INVMNRGDDTPLHLAASHGHRDIVQKLLQYKA-DINAVNEHGNVPLHYACFWGQ 117

Query: 200 DIKDWDTGELLRRAGA-ISAKD 220
           D       E L   GA +S  +
Sbjct: 118 D----QVAEDLVANGALVSICN 135

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 50.1 bits (121), Expect = 1e-07
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 8/80 (10%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
             PLH A   G +  A++++     +    +      +  A       + +   +     
Sbjct: 106 NVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEK----- 159

Query: 89  CSDTDVDGRNPLHLAAMRGH 108
               +++ R P      +G 
Sbjct: 160 -MGQNLN-RIPYKDTFWKGT 177

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 92.9 bits (232), Expect = 2e-22
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 19/175 (10%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            +PLH AA  GH D    ++     I +     + + L  A++  ++  VK L++     
Sbjct: 12  RSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL-------VRAKPDAASTRLIWV---GSTEV--- 135
               D +G   LHLAA +GH +V++ L       V  + D   T +IW       ++   
Sbjct: 71  -DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129

Query: 136 LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
           LL    D   +N +D+     L  A     ++  + L  +   +++AV  +G + 
Sbjct: 130 LLSKGSD---INIRDNEENICLHWAAFSGCVDIAEILLAAKC-DLHAVNIHGDSP 180

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 92.9 bits (232), Expect = 2e-22
 Identities = 42/202 (20%), Positives = 83/202 (41%), Gaps = 21/202 (10%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPL  AA   H +  K ++     + +  D+  S+ LH+A++KG+  +V+ LL      
Sbjct: 45  RTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD 103

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAA----STRLIWV---GSTEV---L 136
            +  D  G  P+  A    H+D+++ L+   +  +      +  L W    G  ++   L
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163

Query: 137 LENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ 196
           L    D   L+A + +G + L +A  + + + +     S   +V      G T     + 
Sbjct: 164 LAAKCD---LHAVNIHGDSPLHIAARENRYDCVVLF-LSRDSDVTLKNKEGETPLQCASL 219

Query: 197 SKRDIKDWDTGELLRRAGAISA 218
           + +      +   + +A   SA
Sbjct: 220 NSQV----WSALQMSKALQDSA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 77.1 bits (191), Expect = 1e-16
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 25/135 (18%)

Query: 56  EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
           +     K S LH A++ G+V I   L+Q   +       D R PL  AA   H++ ++ L
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 116 VRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTS 175
           ++A                           ++ KD  G T L LA      E +++L ++
Sbjct: 64  IKAGAL------------------------VDPKDAEGSTCLHLAAKKGHYEVVQYLLSN 99

Query: 176 TAIEVNAVTANGFTA 190
             ++VN     G+T 
Sbjct: 100 GQMDVNCQDDGGWTP 114

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 90.5 bits (226), Expect = 4e-22
 Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 31/188 (16%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +  L  AA  G  +  K++   +     +++ R+S+ LH A+    V +V+ LLQ   D 
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
            +  D  G  PLH A   GH +V                      E+L+++      +N 
Sbjct: 69  HA-KDKGGLVPLHNACSYGHYEV---------------------AELLVKHGAV---VNV 103

Query: 149 KDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGE 208
            D +  T L  A A  + E  K L    A +      +G T  D++     DI+     +
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGA-DPTKKNRDGNTPLDLVKDGDTDIQ-----D 157

Query: 209 LLRRAGAI 216
           LLR   A+
Sbjct: 158 LLRGDAAL 165

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 91.9 bits (229), Expect = 5e-22
 Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 24/175 (13%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +  +  A          E+  ++  I   +     +     + KG  G++ +        
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGDI-IYITDMSDTNWWKGTSKGRTGLIPSN------Y 65

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAA----STRLIW---VGSTEV---L 136
            ++      NPLH AA RG++  L E +      +      ST L W    G  ++   L
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML 125

Query: 137 LENMG-DFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
                 +   LN ++  G T L  A      + ++ L    A   +        A
Sbjct: 126 FTQPNIE---LNQQNKLGDTALHAAAWKGYADIVQLLLAKGA-RTDLRNIEKKLA 176

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 60.3 bits (147), Expect = 7e-11
 Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +T LH AA  G+ D  + +L +  R  +  +  K  A  +A+      ++K        +
Sbjct: 141 DTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199

Query: 89  CSDTDVDGRNPLHLAAMRGHID 110
            + ++ +       + +  H  
Sbjct: 200 -TLSNAEDYLDDEDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 45.3 bits (108), Expect = 8e-06
 Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 15/105 (14%)

Query: 95  DGRNPLHLAAMRGHIDVLEELVR------AKPDAASTRLIWV---GSTEVLLENMGDFEL 145
            G+  +  A         +EL           D + T        G T ++  N      
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNY----- 65

Query: 146 LNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
           +  + +     L  A     +  ++    +    VN +   G TA
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLRECLDNRV-GVNGLDKAGSTA 109

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 91.3 bits (228), Expect = 1e-21
 Identities = 52/206 (25%), Positives = 79/206 (38%), Gaps = 23/206 (11%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            T LH AA+    D  K  + +   + +      S+ LH A+++G++ +V  L++   D 
Sbjct: 43  VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP 102

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAA----STRLIW-------VGSTEV 135
            S  D +G + +HLAA  GH  ++  L+      D       T L+W       V  T +
Sbjct: 103 -SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161

Query: 136 LLENMGDFELLNAKDDY-GMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDIL 194
           LL        +N  D Y   T L  AV       I  L       V+A    G +A D+ 
Sbjct: 162 LLTFNVS---VNLGDKYHKNTALHWAVLAGNTTVISLL-LEAGANVDAQNIKGESALDLA 217

Query: 195 AQSKRDIKDWDTGELLRRAGAISAKD 220
            Q K           L+ A      D
Sbjct: 218 KQRKNV----WMINHLQEARQAKGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 86.3 bits (215), Expect = 7e-20
 Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 26/162 (16%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              +  A   G  +  +E++     +  + D    + LH A+    + +VK  +      
Sbjct: 10  TWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIV 68

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
                     PLH A  +GH+ ++ +L++   D                         + 
Sbjct: 69  DQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD------------------------PSL 104

Query: 149 KDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
            D  G + + LA        + +L  +   +V+ +  NG T 
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYL-IAKGQDVDMMDQNGMTP 145

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 55.5 bits (135), Expect = 4e-09
 Identities = 16/112 (14%), Positives = 29/112 (25%), Gaps = 17/112 (15%)

Query: 92  TDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAS----TRLIWV---GSTEV---LLEN 139
            D      +  A   G  +   ELV              T L W       ++    +  
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK 64

Query: 140 MGDFELLNAKD-DYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
                 ++    D   T L  A     +  +  L    A + + +   G + 
Sbjct: 65  GAI---VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA-DPSLIDGEGCSC 112

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 90.7 bits (226), Expect = 2e-21
 Identities = 42/209 (20%), Positives = 78/209 (37%), Gaps = 31/209 (14%)

Query: 29  ETPLHVAALLGHEDFAKEI---LPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVI 85
           ++ LH+A +   +    E+   +          ++ + + LH+A       I +ALL   
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLI----WVGST-------- 133
            D     D  G  PLHLA  +G +  +  L ++        ++    + G T        
Sbjct: 69  CDPEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 127

Query: 134 ------EVLLENMGDFELLNAKDD-YGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTAN 186
                 E+L+    D   +NA++   G T L LAV  +  + +  L    A +VN VT  
Sbjct: 128 GYLGIVELLVSLGAD---VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA-DVNRVTYQ 183

Query: 187 GFTAWDILAQSKRDIKDWDTGELLRRAGA 215
           G++ + +              + L +   
Sbjct: 184 GYSPYQLTWGR----PSTRIQQQLGQLTL 208

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 35/174 (20%), Positives = 57/174 (32%), Gaps = 30/174 (17%)

Query: 29  ETPLHVAALLGHEDFAKEIL-----PQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
            TPLH+A   G       +      P    I +  +    + LH+AS  GY+GIV+ L+ 
Sbjct: 79  NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS 138

Query: 84  VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDF 143
           +  D  +    +GR  LHLA    + D++  L++   D                      
Sbjct: 139 LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD---------------------- 176

Query: 144 ELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQS 197
             +N     G +   L          + L   T  E   +            +S
Sbjct: 177 --VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL-ENLQMLPESEDEESYDTES 227

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 68.3 bits (168), Expect = 1e-13
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 20/154 (12%)

Query: 56  EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSD---TDVDGRNPLHLAAMRGHIDVL 112
           ++L     S LH+A       +   +++ +    +     +   + PLHLA +    ++ 
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 113 EELVR--AKPDAAS----TRL---IWVGSTEV---LLE---NMGDFELLNAKDDYGMTIL 157
           E L+     P+       T L      G       L +         +L A +  G T L
Sbjct: 62  EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121

Query: 158 LLAVADKQIEAIKFLTTSTAIEVNAVT-ANGFTA 190
            LA     +  ++ L +  A +VNA    NG TA
Sbjct: 122 HLASIHGYLGIVELLVSLGA-DVNAQEPCNGRTA 154

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 91.9 bits (229), Expect = 4e-21
 Identities = 38/167 (22%), Positives = 55/167 (32%), Gaps = 16/167 (9%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              +HVAA  G  D  + ++          +    +ALH+A + G V   K L  V    
Sbjct: 21  MEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGEVH 79

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIW---VGSTEVLLENMGDFEL 145
              +   G+ P+HLA M    D++  LV    +               EV          
Sbjct: 80  ---SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIG------ 130

Query: 146 LNAKDDYGMTILLLAVA--DKQIEAIKFLTTSTAIEVNAVTANGFTA 190
            + K   G T L   V    + +E IK L    A    A      T 
Sbjct: 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA-SPTAKDKADETP 176

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 86.8 bits (216), Expect = 3e-19
 Identities = 23/174 (13%), Positives = 47/174 (27%), Gaps = 38/174 (21%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            + LH A L+  ED A   +     +    D+  +  L+++ +   V + K LLQ     
Sbjct: 212 NSHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF 270

Query: 89  CSD------------TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVL 136
                            V   + +  AA     +VL+ L     +               
Sbjct: 271 LIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE--------------- 315

Query: 137 LENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
                    +    + G    +           +     +A  V   + +   +
Sbjct: 316 ---------VVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSA-PVRTRSRSRARS 359

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 84.2 bits (209), Expect = 2e-18
 Identities = 33/221 (14%), Positives = 59/221 (26%), Gaps = 35/221 (15%)

Query: 29  ETPLHVAALLG--HEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
           +T LH    LG  + +  K ++          D    + L  A +      +  ++  +P
Sbjct: 139 QTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVP 197

Query: 87  DKCS----DTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAS----TRLIWV---GST 133
            K S      +  G + LH A +    DV    V      +         L         
Sbjct: 198 SKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMV 257

Query: 134 EV---LLENMGDFELLNAKDDYGMTILL----------LAVADKQIEAIKFLTTSTAIEV 180
            +   LL+    F +       G T+L            A    + E ++ L      EV
Sbjct: 258 LLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLD-EV 316

Query: 181 NAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGA-ISAKD 220
                 G        +            +     A +  + 
Sbjct: 317 VRSLNTGAGGAVKRKKKAAP----AVKRMKLAPSAPVRTRS 353

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 71.4 bits (176), Expect = 5e-14
 Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 24/173 (13%)

Query: 56  EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
            + D      +H+A++KG    V+ L++      +  +  G   LHLA   G +D  + L
Sbjct: 14  IKSDDENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYL 72

Query: 116 VRAKPDAAS----TRLIW---VGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEA 168
                  +       +        T++++       L+    + G     L     + E 
Sbjct: 73  ASVGEVHSLWHGQKPIHLAVMANKTDLVV------ALVEGAKERGQMPESLLNECDEREV 126

Query: 169 IKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGA-ISAKD 220
            +       I  +     G TA         +    +  ++L + GA  +AKD
Sbjct: 127 NE-------IGSHVKHCKGQTALHWCVGLGPEYL--EMIKILVQLGASPTAKD 170

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 10/144 (6%), Positives = 30/144 (20%), Gaps = 37/144 (25%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRI------------AEELDSRKSSALHIASQKGYVG 76
             PL+++         KE+L +                           +  A+      
Sbjct: 245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE 304

Query: 77  IVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVL 136
           +++ L + + +    +   G         +    V                       + 
Sbjct: 305 VLQLLQEKLDEVVR-SLNTGAGGAVKRKKKAAPAV---------------------KRMK 342

Query: 137 LENMGDFELLNAKDDYGMTILLLA 160
           L        +  +         ++
Sbjct: 343 LAPSAP---VRTRSRSRARSSAVS 363

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 89.2 bits (222), Expect = 5e-21
 Identities = 32/201 (15%), Positives = 69/201 (34%), Gaps = 19/201 (9%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +  L             E +    R+  + +    + L  +S +G   +V+ ++  + D 
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDP 63

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAS----TRLIWV---GSTEV---L 136
            S  + +G   LH A   GH ++++ LV+     +AA     T L       + +V   L
Sbjct: 64  -SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122

Query: 137 LENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ 196
           +E+      +   D          + +   +  +FL      ++  +      A      
Sbjct: 123 VESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE-KMGIMNKGVIYALWDYEP 181

Query: 197 SKRD---IKDWDTGELLRRAG 214
              D   +K+ D   ++ R  
Sbjct: 182 QNDDELPMKEGDCMTIIHRED 202

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 22/170 (12%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDA 122
           +L    +          +          +      L  +++ G  D+++ ++     P  
Sbjct: 8   SLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL 65

Query: 123 A----STRLIWV---GSTEV---LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFL 172
                 T L      G TE+   L++   +   +NA D  G T L  A +   ++  KFL
Sbjct: 66  PNDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFL 122

Query: 173 TTSTAIEVNAVTANGFTAWDILAQ-SKRDIKDWDTGELLRRAGA-ISAKD 220
             S A  V A+T +         +  +         + L      +   +
Sbjct: 123 VESGA-AVFAMTYSDMQTAADKCEEMEEGYT--QCSQFLYGVQEKMGIMN 169

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 89.9 bits (224), Expect = 1e-20
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 14/168 (8%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           T LH A +  + D  K ++     I  + D+     LH A+  GY+ I + L+       
Sbjct: 75  TALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV- 132

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELL--- 146
              + +G  PL +A      ++L+  V  +               +L +     + L   
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE-EERIMLRDAR---QWLNSG 188

Query: 147 ----NAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
                     G T L +A A    E +K L  +   +VN    +G+T 
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY-DVNIKDYDGWTP 235

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 87.6 bits (218), Expect = 5e-20
 Identities = 45/205 (21%), Positives = 75/205 (36%), Gaps = 29/205 (14%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
             PLH AA  G+ D A+ ++ Q   +   ++S   + L IA ++    +++  +      
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEV------ 159

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL------VRAKPDAASTRLIWV---GSTEV---L 136
            +   VD              D  + L            +  T L      G TEV   L
Sbjct: 160 -NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 137 LENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ 196
           ++   D   +N KD  G T L  A    + EA + L  +   ++ AV   G TA+D+  +
Sbjct: 219 IQARYD---VNIKDYDGWTPLHAAAHWGKEEACRILVENLC-DMEAVNKVGQTAFDVADE 274

Query: 197 SKRDIKDWDTGELLRRAGA-ISAKD 220
                      EL ++     S K 
Sbjct: 275 DILG----YLEELQKKQNLLHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 83.3 bits (207), Expect = 2e-18
 Identities = 32/206 (15%), Positives = 65/206 (31%), Gaps = 34/206 (16%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ--VIPD 87
               +   +G E   +  + ++ +   + D    +    A   G    V  LL+     +
Sbjct: 10  RNEQLKRWIGSETDLEPPVVKRKKTKVKFDD--GAVFLAACSSGDTEEVLRLLERGADIN 67

Query: 88  KCSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAS----TRLIWV---GSTEV--- 135
                +VDG   LH A +  ++D+++ LV   A  +         L      G  ++   
Sbjct: 68  YA---NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEY 124

Query: 136 LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILA 195
           L+        + A +  G T L +A  +   E ++         VN    +   A     
Sbjct: 125 LISQGAH---VGAVNSEGDTPLDIAEEEAMEELLQNE-------VNRQGVDIEAA-RKEE 173

Query: 196 QSKRDIKDWDTGELLRRAGA-ISAKD 220
             +  ++  D  + L           
Sbjct: 174 -ERIMLR--DARQWLNSGHINDVRHA 196

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 18/150 (12%)

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR- 117
           D+++     +    G    ++  +            D       A   G  + +  L+  
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKT--KVKFDDGAVFLAACSSGDTEEVLRLLER 62

Query: 118 -AKPDAA----STRLIWV---GSTEV---LLENMGDFELLNAKDDYGMTILLLAVADKQI 166
            A  + A     T L       + ++   L+EN  +   +N  D+ G   L  A +   +
Sbjct: 63  GADINYANVDGLTALHQACIDDNVDMVKFLVENGAN---INQPDNEGWIPLHAAASCGYL 119

Query: 167 EAIKFLTTSTAIEVNAVTANGFTAWDILAQ 196
           +  ++L +  A  V AV + G T  DI  +
Sbjct: 120 DIAEYLISQGA-HVGAVNSEGDTPLDIAEE 148

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 88.7 bits (221), Expect = 1e-20
 Identities = 47/202 (23%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ---VI 85
           ET LH+AA     D AK +L          D+   + LH A      G+ + L++     
Sbjct: 58  ETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116

Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEELV--RAKPDAA----STRLIW---VGSTEV- 135
            D       DG  PL LAA      +LE+L+   A  +A      + L W   V + +  
Sbjct: 117 LDA---RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173

Query: 136 --LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
             LL+N  +    + +++   T L LA  +   E  K L        +          DI
Sbjct: 174 VVLLKNGAN---KDMQNNREETPLFLAAREGSYETAKVL-LDHFANRDITDHMDRLPRDI 229

Query: 194 LAQSKRDIKDWDTGELLRRAGA 215
             +        D   LL     
Sbjct: 230 AQERMH----HDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 86.8 bits (216), Expect = 7e-20
 Identities = 42/191 (21%), Positives = 67/191 (35%), Gaps = 37/191 (19%)

Query: 29  ETPLHVAALLGHEDFAKEILPQK--PRIAEEL-----------DSRKSSALHIASQKGYV 75
            TPL +A+  G          ++  P +  +            D    +ALH+A++    
Sbjct: 11  FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRS 70

Query: 76  GIVKALLQVIPDKCSD---TDVDGRNPLHLAAMRGHIDVLEELVR-------AKPDAAST 125
              K LL    +  +D    D  GR PLH A       V + L+R       A+    +T
Sbjct: 71  DAAKRLL----EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 126

Query: 126 RLI---WVGSTEV---LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIE 179
            LI    +    +   L+ +  D   +NA DD G + L  A A   ++A   L       
Sbjct: 127 PLILAARLAVEGMLEDLINSHAD---VNAVDDLGKSALHWAAAVNNVDAAVVL-LKNGAN 182

Query: 180 VNAVTANGFTA 190
            +       T 
Sbjct: 183 KDMQNNREETP 193

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 45.5 bits (109), Expect = 8e-06
 Identities = 22/100 (22%), Positives = 31/100 (31%), Gaps = 15/100 (15%)

Query: 93  DVDGRNPLHLAAMRGHIDVLEELVRAK--PDAASTRLIWVGSTEVLLENMGDFELLNAKD 150
             DG  PL +A+  G           +  P                +       L N  D
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVI----------SDFIYQGAS--LHNQTD 54

Query: 151 DYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
             G T L LA    + +A K L  ++A + N     G T 
Sbjct: 55  RTGETALHLAARYSRSDAAKRLLEASA-DANIQDNMGRTP 93

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 88.4 bits (220), Expect = 1e-20
 Identities = 38/211 (18%), Positives = 71/211 (33%), Gaps = 31/211 (14%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIA-----EELDSRKSSALHIASQKGYVGIVKALLQ 83
           E+PL +AA         ++L             +  +   +ALHIA+    +     L++
Sbjct: 4   ESPLLLAAKENDVQALSKLL-----KFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME 58

Query: 84  ----VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAASTRLIWVGSTEVLL 137
               ++ +  +    +G+  LH+A +  +++++  L+   A   A +T            
Sbjct: 59  AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARAT------------ 106

Query: 138 ENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQS 197
                    +    YG   L  A      E ++ L    A ++ A  + G T   IL   
Sbjct: 107 -GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA-DIRAQDSLGNTVLHILILQ 164

Query: 198 KRDIKDWDTGELLRRAGA-ISAKDLQLPVNE 227
                      LL         K L+L  N 
Sbjct: 165 PNKTFACQMYNLLLSYDGGDHLKSLELVPNN 195

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 15/92 (16%)

Query: 96  GRNPLHLAAMRGHIDVLEEL-------VRAKPDAASTRL---IWVGSTEV---LLENMGD 142
             +PL LAA    +  L +L       V  +     T L       + E    L+E   +
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 143 --FELLNAKDDYGMTILLLAVADKQIEAIKFL 172
             FE + ++   G T L +AV ++ +  ++ L
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRAL 94

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 86.7 bits (216), Expect = 2e-20
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 25/162 (15%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              L  A     +   + +     ++ +E+D+  ++ L+IA     + I KAL+    D 
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
               +    +P   A  +G  ++L  +            +   + ++           N 
Sbjct: 66  NL-QNSISDSPYLYAGAQGRTEILAYM------------LKHATPDL-----------NK 101

Query: 149 KDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
            + YG   L+ A     I+ +K L      +++     G+TA
Sbjct: 102 HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTA 143

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 83.3 bits (207), Expect = 4e-19
 Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 22/162 (13%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPL++A      + AK ++ +   I    +S   S    A  +G   I+  +L+     
Sbjct: 40  NTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPD 98

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELV---RAKPD------------AASTRLIWVGST 133
            +  +  G N L  AA +GHID ++ L+   R   D            A   R       
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158

Query: 134 EV---LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFL 172
           ++   L+EN  D    + KD+ G T +  A      E  K L
Sbjct: 159 DIVKLLMENGAD---QSIKDNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 72.9 bits (180), Expect = 2e-15
 Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 25/132 (18%)

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRA 118
                + L  A+Q+    + + L         + D +G  PL++A     I++ + L+  
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 119 KPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAI 178
             D                        +N ++    +  L A A  + E + ++      
Sbjct: 62  GAD------------------------INLQNSISDSPYLYAGAQGRTEILAYMLKHATP 97

Query: 179 EVNAVTANGFTA 190
           ++N     G  A
Sbjct: 98  DLNKHNRYGGNA 109

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 59.4 bits (145), Expect = 9e-11
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIA-----SQKGYVGIVKALLQ 83
              L  AA  GH D  K +L       +  +    +AL  A       + Y  IVK L++
Sbjct: 107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166

Query: 84  VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELV 116
              D+ S  D  GR  +  A  +G+ ++ + L 
Sbjct: 167 NGADQ-SIKDNSGRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 29  ETPLHVAALL-----GHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
            T L  A  L      ++D  K ++          D+   +A+  A+QKGY  I K L Q
Sbjct: 141 YTALIEAVGLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 88.3 bits (220), Expect = 3e-20
 Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 24/176 (13%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            +P+H AA+ GH+   + ++ Q   +   + +   S LH A   G++  VK LL      
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILL----KH 114

Query: 89  CSD---TDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAS---TRLIWV---GSTEV-- 135
            +       D   PL  A + G  D +  L++  A     S   + +      G  E   
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVN 174

Query: 136 -LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
            L+   G+   ++ K  +  T L LA  ++Q   +K L  S A +VN       + 
Sbjct: 175 SLIAYGGN---IDHKISHLGTPLYLACENQQRACVKKLLESGA-DVNQ-GKGQDSP 225

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 82.2 bits (204), Expect = 4e-18
 Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 38/189 (20%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ--VIP 86
            TPL  A + G  D    +L     +  + +S  +S +H A+++G+V  V +L+      
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASV--QPESDLASPIHEAARRGHVECVNSLIAYGGNI 183

Query: 87  DKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELL 146
           D           PL+LA        +++L+ +  D                        +
Sbjct: 184 DHK---ISHLGTPLYLACENQQRACVKKLLESGAD------------------------V 216

Query: 147 NAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDT 206
           N +     + L   V     E    L    A +  A  A G    +++       +    
Sbjct: 217 N-QGKGQDSPLHAVVRTASEELACLLMDFGA-DTQAKNAEGKRPVELVPPESPLAQ---- 270

Query: 207 GELLRRAGA 215
              L R GA
Sbjct: 271 -LFLEREGA 278

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 74.5 bits (184), Expect = 2e-15
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 26/173 (15%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
            P       G        L   P + + +     S +H A+  G+   ++ L+       
Sbjct: 35  KPAGPRDFPGIR------LLSNPLMGDAVSDW--SPMHEAAIHGHQLSLRNLISQGWAV- 85

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAA----STRLIW---VGSTEV---LL 137
           +    D  +PLH A + GH+  ++ L++  A+ +       T L      GS +    LL
Sbjct: 86  NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL 145

Query: 138 ENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
           ++      +  + D   + +  A     +E +  L       ++   ++  T 
Sbjct: 146 QHGAS---VQPESD-LASPIHEAARRGHVECVNSLIAYGG-NIDHKISHLGTP 193

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 62.5 bits (153), Expect = 2e-11
 Identities = 27/161 (16%), Positives = 48/161 (29%), Gaps = 37/161 (22%)

Query: 34  VAALLGHEDFAKEILPQKPRIAEELDSRK----SSALHIASQKGYVGIVKALLQVIPDKC 89
           + +   H   +  ++P+   +A     +     S         G   +   L+       
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMG------ 54

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAK 149
               V   +P+H AA+ GH   L  L+                             +N  
Sbjct: 55  --DAVSDWSPMHEAAIHGHQLSLRNLISQGWA------------------------VNII 88

Query: 150 DDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
               ++ L  A     +  +K L    A +VN VTA+  T 
Sbjct: 89  TADHVSPLHEACLGGHLSCVKILLKHGA-QVNGVTADWHTP 128

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 88.0 bits (219), Expect = 4e-20
 Identities = 30/206 (14%), Positives = 63/206 (30%), Gaps = 26/206 (12%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            +  + A    +      +L         L++     LH A+      IVK LL    D 
Sbjct: 32  HSASYYAIADNNVRLVCTLLNAGALK-NLLENE--FPLHQAATLEDTKIVKILLFSGLDD 88

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAA-----STRLIW---VGSTEV--- 135
            S  D  G   L+ A   G++  ++  V+   +          T       +    +   
Sbjct: 89  -SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSY 147

Query: 136 LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILA 195
            L  +             ++ + + + +  ++ +  L        N   +  F     LA
Sbjct: 148 FLSEIPS----TFDLAILLSCIHITIKNGHVDMMILLLDYMT-STNTNNSLLFIPDIKLA 202

Query: 196 QSKRDIKDWDTGELLRRAGA-ISAKD 220
              +DI   +  + L +    I + +
Sbjct: 203 IDNKDI---EMLQALFKYDINIYSAN 225

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 67.6 bits (166), Expect = 4e-13
 Identities = 24/145 (16%), Positives = 42/145 (28%), Gaps = 21/145 (14%)

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR- 117
           D    SA + A     V +V  LL     K     ++   PLH AA      +++ L+  
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLNAGALK---NLLENEFPLHQAATLEDTKIVKILLFS 84

Query: 118 -AKPDAAS----TRLIW---VGSTEV---LLENMGDFELLNAKDDYG-MTILLLAVADKQ 165
                       T L +    G+ +     ++       L      G  T    AV    
Sbjct: 85  GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWKTSFYHAVMLND 141

Query: 166 IEAIKFLTTSTAIEVNAVTANGFTA 190
           +  + +  +          A   + 
Sbjct: 142 VSIVSYFLSEIPS--TFDLAILLSC 164

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.5 bits (158), Expect = 5e-12
 Identities = 16/158 (10%), Positives = 41/158 (25%), Gaps = 34/158 (21%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            + +H+    GH D    +L                 + +A     + +++AL +     
Sbjct: 162 LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY---- 217

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
               D++  +      +    ++ + ++    +                          +
Sbjct: 218 ----DINIYSANLENVLLDDAEIAKMIIEKHVE------------------------YKS 249

Query: 149 KDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTAN 186
                     +   +K  E I        + VN V  N
Sbjct: 250 DSYTKDL--DIVKNNKLDEIISKNKELRLMYVNCVKKN 285

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 88.9 bits (221), Expect = 5e-20
 Identities = 28/169 (16%), Positives = 53/169 (31%), Gaps = 26/169 (15%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPL +A L         ++          +  + SALH A+     G++  +L     K
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLK 225

Query: 89  CS--DTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLE-----NMG 141
               + D +G   L + A     D +                     ++L+E     +  
Sbjct: 226 GDIEELDRNGMTALMIVAHNEGRDQVAS------------------AKLLVEKGAKVDYD 267

Query: 142 DFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
                +++   G T L  A     +  +K+L        +    +G T 
Sbjct: 268 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP 316

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 85.0 bits (211), Expect = 1e-18
 Identities = 39/200 (19%), Positives = 65/200 (32%), Gaps = 42/200 (21%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIA--EELDSRKSSALHIASQKGY---VGIVKALL- 82
            + LH AA          +L         EELD    +AL I +       V   K L+ 
Sbjct: 200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVE 259

Query: 83  ------QVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVL 136
                      +       GR  LH AA   ++ +                      + L
Sbjct: 260 KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI---------------------VKYL 298

Query: 137 LENMG-DFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILA 195
           +   G +    + +D+ G T ++LA  + +IE + +L    A  V AV A   TA  +  
Sbjct: 299 VGEKGSN---KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA-SVEAVDATDHTARQLAQ 354

Query: 196 QSKRDIKDWDTGELLRRAGA 215
            +       +  ++  R   
Sbjct: 355 ANNHH----NIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 82.7 bits (205), Expect = 7e-18
 Identities = 27/162 (16%), Positives = 52/162 (32%), Gaps = 21/162 (12%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
             P       G++    +      +I  E +      LH  +  G   I + + +   + 
Sbjct: 62  LYPNPQGYGNGNDFLG-DFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNI 119

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
                   R  LH  A     +  E+L+             V   +  +    D   +NA
Sbjct: 120 --IDPRHNRTVLHWIASNSSAEKSEDLI-------------VHEAKECIAAGAD---VNA 161

Query: 149 KDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
            D    T L+LAV  ++   + +L  + A +      +  +A
Sbjct: 162 MDCDENTPLMLAVLARRRRLVAYLMKAGA-DPTIYNKSERSA 202

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 70.8 bits (174), Expect = 6e-14
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            T LH AA + +    K ++ +K    ++ D    + + +A+Q+G + +V  L+Q     
Sbjct: 280 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 339

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
               D        LA    H ++++   R +P+
Sbjct: 340 -EAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 26/175 (14%), Positives = 50/175 (28%), Gaps = 37/175 (21%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDA 122
           +L  AS  GY+   +  L                P       G+  + +        P  
Sbjct: 40  SLLEASYDGYIKRQRNEL----------QHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE 89

Query: 123 A----STRLIW--VGSTEV---LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLT 173
                  +L     GS  +   +     +         +  T+L    ++   E  + L 
Sbjct: 90  PEPESPIKLHTEAAGSYAITEPITRESVNI----IDPRHNRTVLHWIASNSSAEKSEDLI 145

Query: 174 TSTA-------IEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGA-ISAKD 220
              A        +VNA+  +  T   +   ++R          L +AGA  +  +
Sbjct: 146 VHEAKECIAAGADVNAMDCDENTPLMLAVLARRR----RLVAYLMKAGADPTIYN 196

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +TP+ +AA  G  +    ++ Q   + E +D+   +A  +A    +  IV    +  P++
Sbjct: 314 KTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 84.3 bits (210), Expect = 6e-20
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 22/164 (13%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
             L  AA  G +D  + ++     +    D+   + LH+A+  G++ IV+ LL+   D  
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAS----TRLIW---VGSTEV---LL 137
           +  D  G  PL LAA+ GH++++E L++  A  +A      T L      G  E+   LL
Sbjct: 75  A-VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133

Query: 138 ENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVN 181
           +N  D   +NA+D +G T   +++ +   +  + L      ++N
Sbjct: 134 KNGAD---VNAQDKFGKTAFDISIDNGNEDLAEIL-----QKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 72.4 bits (179), Expect = 1e-15
 Identities = 45/138 (32%), Positives = 65/138 (47%), Gaps = 17/138 (12%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDA 122
            L  A++ G    V+ L+    D  +  D  G  PLHLAA  GH++++E L++  A  +A
Sbjct: 17  KLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75

Query: 123 A----STRLIWV---GSTEV---LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFL 172
                 T L      G  E+   LL+N  D   +NA D  G T L LA     +E ++ L
Sbjct: 76  VDHAGMTPLRLAALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVL 132

Query: 173 TTSTAIEVNAVTANGFTA 190
             + A +VNA    G TA
Sbjct: 133 LKNGA-DVNAQDKFGKTA 149

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 64.7 bits (159), Expect = 7e-13
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPL +AAL GH +  + +L     +    D    + LH+A+  G++ IV+ LL+   D 
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELV 116
            +  D  G+    ++   G+ D+ E L 
Sbjct: 140 -NAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 54.3 bits (132), Expect = 4e-09
 Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 16/108 (14%)

Query: 95  DGRNPLHLAAMRGHIDVLEELVR--AKPDAA----STRLIWV---GSTEV---LLENMGD 142
           D    L  AA  G  D +  L+   A  +A      T L      G  E+   LL+N  D
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72

Query: 143 FELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
              +NA D  GMT L LA     +E ++ L  + A +VNA    G T 
Sbjct: 73  ---VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA-DVNANDMEGHTP 116

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
            TPLH+AA+ GH +  + +L     +    D    +A  I+   G   + + L ++
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 87.6 bits (218), Expect = 1e-19
 Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 15/168 (8%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
             PLH A   GH +  + +L     +   +D  + + LH A+ K  V +   LL      
Sbjct: 92  LVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLL----SH 146

Query: 89  CSD---TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFEL 145
            +D    +  G++ + +A      + L    +      + R   +   +  L        
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII--- 203

Query: 146 LNAKDDYGMTILLLAVA---DKQIEAIKFLTTSTAIEVNAVTANGFTA 190
              +     T L  AVA    K+ +  + L    A  VN    +  T 
Sbjct: 204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGA-NVNEKNKDFMTP 250

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 84.5 bits (210), Expect = 1e-18
 Identities = 54/225 (24%), Positives = 83/225 (36%), Gaps = 38/225 (16%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +  L  AA  G+E+    +L          D RKS+ LH+A+    V IV+ LLQ   D 
Sbjct: 25  KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAS----TRLIWV---GSTEV---L 136
            +  D  G  PLH A   GH +V E L++  A  +A      T L         EV   L
Sbjct: 85  HA-KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143

Query: 137 LENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAI------------------ 178
           L +  D       + +G + + +A   +  E + +     ++                  
Sbjct: 144 LSHGAD---PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL 200

Query: 179 --EVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGA-ISAKD 220
                    +  TA    A +    K     ELL R GA ++ K+
Sbjct: 201 EIINFKQPQSHETA-LHCAVASLHPKRKQVAELLLRKGANVNEKN 244

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 79.5 bits (197), Expect = 8e-17
 Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 49/189 (25%)

Query: 25  NCLSETPLHVAALLGHEDFAKEILPQKP-----------RIAEELDSRKS---------S 64
           NC  ++ + +A      +                     ++ + L              +
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET 213

Query: 65  ALHIASQKGYVG---IVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
           ALH A    +     + + LL+   +  ++ + D   PLH+AA R H DV+E L +    
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272

Query: 122 AASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVN 181
                                   +NA D  G T L  A     ++  + L +  + + +
Sbjct: 273 ------------------------MNALDSLGQTALHRAALAGHLQTCRLLLSYGS-DPS 307

Query: 182 AVTANGFTA 190
            ++  GFTA
Sbjct: 308 IISLQGFTA 316

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 70.6 bits (174), Expect = 7e-14
 Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 43/166 (25%)

Query: 29  ETPLHVAALLGHEDFAKEI----LPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
           ET LH A    H    K++    L +   +  E +    + LH+A+++ +  +++ L   
Sbjct: 212 ETALHCAVASLHPK-RKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLH-- 267

Query: 85  IPDKCSD---TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMG 141
                +     D  G+  LH AA+ GH+     L+    D                    
Sbjct: 268 --KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD-------------------- 305

Query: 142 DFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANG 187
                +     G T   +       EA++ + + +   +     + 
Sbjct: 306 ----PSIISLQGFTAAQMGN-----EAVQQILSEST-PMRTSDVDY 341

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 82.4 bits (205), Expect = 2e-19
 Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 32/183 (17%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              L  AA  G +D  + ++          D   +S LH+A+Q G+    + LL+    +
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
            +      R PLH+AA  GH ++                      EVLL++  D   +NA
Sbjct: 61  DA-RTKVDRTPLHMAASEGHANI---------------------VEVLLKHGAD---VNA 95

Query: 149 KDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGE 208
           KD   MT L  A      E ++ L    A +V+  +    TA+DI   +  +    D  E
Sbjct: 96  KDMLKMTALHWATEHNHQEVVELLIKYGA-DVHTQSKFCKTAFDISIDNGNE----DLAE 150

Query: 209 LLR 211
           +L+
Sbjct: 151 ILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 50.8 bits (123), Expect = 4e-08
 Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 20/138 (14%)

Query: 95  DGRNPLHLAAMRGHIDVLEELVR-----AKPDAASTRLIWV---GSTEV---LLENMGDF 143
           D    L  AA  G  D +  L+            ++ L      G       LL      
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS- 59

Query: 144 ELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKD 203
              +A+     T L +A ++     ++ L    A +VNA      TA     +       
Sbjct: 60  --RDARTKVDRTPLHMAASEGHANIVEVLLKHGA-DVNAKDMLKMTALHWATEHNHQ--- 113

Query: 204 WDTGELLRRAGA-ISAKD 220
            +  ELL + GA +  + 
Sbjct: 114 -EVVELLIKYGADVHTQS 130

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 84.8 bits (210), Expect = 3e-19
 Identities = 37/192 (19%), Positives = 59/192 (30%), Gaps = 41/192 (21%)

Query: 29  ETPLHVAALL---GHEDFAKEILPQKPRIAEEL----------DSRKSSALHIASQKGYV 75
           +T L  A L    G       +L                      +  SALHIA +K  +
Sbjct: 44  KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSL 103

Query: 76  GIVKALLQ------------VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR-----A 118
             VK L++                        G  PL LAA     DV+  L+      A
Sbjct: 104 QCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA 163

Query: 119 KPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAI 178
             +A  +     G+T VL        ++ A +    + L++ + D  ++    L  +   
Sbjct: 164 SLEATDSL----GNT-VL-----HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ- 212

Query: 179 EVNAVTANGFTA 190
                   G T 
Sbjct: 213 LEEISNHQGLTP 224

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 69.8 bits (171), Expect = 5e-14
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 21/115 (18%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAE------------------ELDSRKSSALHIAS 70
           E PL +AA     D    +L    + A                     +S ++SAL I  
Sbjct: 137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHM 196

Query: 71  QKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAA 123
             G + +   L   +  +   ++  G  PL LAA  G I++   +++      AA
Sbjct: 197 YDGLLQMGARLCPTVQLE-EISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAA 250

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 33/228 (14%), Positives = 60/228 (26%), Gaps = 50/228 (21%)

Query: 30  TPLHVAALLGH----EDFAKEILPQKPRIAEELDSRKSS---ALHIA---SQKGYVGIVK 79
             L      G         + +      + +   +  S+    L  A    Q G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 80  ALLQVIPDK----------CSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAASTRL 127
            LLQ+  D           C+D    G + LH+A  +  +  ++ LV   A     +   
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC-- 121

Query: 128 IWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAI--EVNAVTA 185
                           +       +G   L LA   KQ + + +L  +      + A  +
Sbjct: 122 -----------GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDS 170

Query: 186 NGFTAWDILAQSKRDIKDW------------DTGELLRRAGA-ISAKD 220
            G T    L     +  +               G  L          +
Sbjct: 171 LGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN 218

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 80.5 bits (200), Expect = 7e-19
 Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 26/144 (18%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPLH+AA  GH +  K +L     +    D    + LH+A++ G++ +VK LL+   D 
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
            +  D +GR PLHLAA  GH++V                      ++LLE   D   +NA
Sbjct: 62  NA-KDKNGRTPLHLAARNGHLEV---------------------VKLLLEAGAD---VNA 96

Query: 149 KDDYGMTILLLAVADKQIEAIKFL 172
           KD  G T L LA  +  +E +K L
Sbjct: 97  KDKNGRTPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 68.1 bits (168), Expect = 2e-14
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 2/88 (2%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPLH+AA  GH +  K +L     +    D    + LH+A++ G++ +VK LL+   D 
Sbjct: 36  RTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 94

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELV 116
            +  D +GR PLHLAA  GH++V++ L+
Sbjct: 95  -NAKDKNGRTPLHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 56.6 bits (138), Expect = 2e-10
 Identities = 42/108 (38%), Positives = 55/108 (50%), Gaps = 16/108 (14%)

Query: 95  DGRNPLHLAAMRGHIDVLEELVR--AKPDAA----STRLIWV---GSTEV---LLENMGD 142
           +GR PLHLAA  GH++V++ L+   A  +A      T L      G  EV   LLE   D
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 143 FELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
              +NAKD  G T L LA  +  +E +K L  + A +VNA   NG T 
Sbjct: 61  ---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTP 104

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 84.1 bits (209), Expect = 9e-19
 Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 19/195 (9%)

Query: 29  ETPLHVAALLGHEDFAKEILPQ--KPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
           +T LH+A +  HE F   +L         +  +    +ALH+A+  G    V+ L     
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 87  DKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELL 146
                 +  G   LHLA           L++ +P           +++  L         
Sbjct: 70  GVLV-AERGGHTALHLACRVRAHTCACVLLQPRPS------HPRDASDTYLTQ-----SQ 117

Query: 147 NAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDT 206
           +   D       +          +       +++ A   +G T   +    K      + 
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA----EM 173

Query: 207 GELLRRAGA-ISAKD 220
             LLR AGA ++  +
Sbjct: 174 VRLLRDAGADLNKPE 188

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 78.4 bits (194), Expect = 7e-17
 Identities = 41/219 (18%), Positives = 66/219 (30%), Gaps = 36/219 (16%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ----- 83
           +T LH+AA+LG     +++      +    +    +ALH+A +         LLQ     
Sbjct: 46  QTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104

Query: 84  -------VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL-------VRAKPDAASTRLIW 129
                   +      T      P  + +     +  E         + A+     T L  
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV 164

Query: 130 ---VGSTEV---LLENMGDFELLNAKD-DYGMTILLLAVADKQIEAIKFLTTSTAIEVNA 182
                  E+   L +   D   LN  +   G T L LAV  +    ++ L  + A +  A
Sbjct: 165 AVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA-DPTA 220

Query: 183 VTANGFTAWDILAQSKRDIKDWDTGELLRRAGA-ISAKD 220
               G T                   LLR  GA      
Sbjct: 221 RMYGGRTPLGSALLRPNP----ILARLLRAHGAPEPEDG 255

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 75.7 bits (187), Expect = 8e-16
 Identities = 29/188 (15%), Positives = 53/188 (28%), Gaps = 31/188 (16%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEEL-------------DSRKSSALHIASQKGYV 75
            T LH+A  +     A  +L  +P    +              D+  + A   +      
Sbjct: 79  HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN 138

Query: 76  GIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELV--RAKPDAA-----STRLI 128
                         +  + DG  PLH+A +    +++  L    A  +        T L 
Sbjct: 139 EEEPRDEDWRLQLEA-ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197

Query: 129 WV---GSTEV---LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNA 182
                 +  V   LL+   D     A+   G T L  A+        + L  +       
Sbjct: 198 LAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPILARLL-RAHGAPEPE 253

Query: 183 VTANGFTA 190
              +  + 
Sbjct: 254 DGGDKLSP 261

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 69.5 bits (171), Expect = 1e-13
 Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 8/90 (8%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV---I 85
            TPLH+A         + +L               + L  A  +    + + L       
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251

Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
           P+       D  +P   +      D  +E 
Sbjct: 252 PED----GGDKLSPCSSSGSDSDSDNRDEG 277

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 68.3 bits (168), Expect = 3e-13
 Identities = 20/144 (13%), Positives = 42/144 (29%), Gaps = 31/144 (21%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPLHVA +    +  + +      + +   +   + LH+A +     +++ LL      
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL----KA 214

Query: 89  CSD---TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFEL 145
            +D       GR PL  A +R +  +   L                              
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP------------------------ 250

Query: 146 LNAKDDYGMTILLLAVADKQIEAI 169
                   ++    + +D   +  
Sbjct: 251 EPEDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 22/99 (22%)

Query: 92  TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDD 151
              DG   LHLA +  H                         + LL      E L+ ++D
Sbjct: 5   VTEDGDTALHLAVIHQHEPF---------------------LDFLLGFSAGHEYLDLQND 43

Query: 152 YGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
            G T L LA    +   ++ L  + A  V      G TA
Sbjct: 44  LGQTALHLAAILGEASTVEKLYAAGA-GVLVAERGGHTA 81

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 9/55 (16%), Positives = 14/55 (25%), Gaps = 1/55 (1%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
            TPL  A L  +   A+ +         E    K S    +             +
Sbjct: 226 RTPLGSALLRPNPILARLLRAHGAPE-PEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 81.6 bits (202), Expect = 1e-18
 Identities = 28/209 (13%), Positives = 65/209 (31%), Gaps = 39/209 (18%)

Query: 25  NCLSE-TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKS--SALHIASQKGYVGIVKAL 81
           N +SE   +  AA+LG  +   E+  +     E +         L   + +    I   L
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 82  LQVIPDKCSD---TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLE 138
           +    +K +D      +G          G  D+       K               + LE
Sbjct: 62  I----NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCK---------------IFLE 102

Query: 139 NMGDFELLNAKDDYGMTILLLAVAD------KQIEAIKFLTTSTAIEVNAVTANGFTAWD 192
              D   + A       ++   + +      + I   K + + + +++      G TA +
Sbjct: 103 KGAD---ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE 159

Query: 193 ILAQSKRDIKDWDTGELLRRAGA-ISAKD 220
            + + ++        +++       + K+
Sbjct: 160 FVKRCQKP----IALKMMEDYIKKYNLKE 184

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 80.1 bits (199), Expect = 2e-18
 Identities = 41/187 (21%), Positives = 64/187 (34%), Gaps = 31/187 (16%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              L  AA  G  +    +L     +    +    +AL +    G   I + LL    + 
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP 63

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
               D  G   +H AA  G +D                       + LLE   D   +N 
Sbjct: 64  DL-KDRTGFAVIHDAARAGFLDT---------------------LQTLLEFQAD---VNI 98

Query: 149 KDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGE 208
           +D+ G   L LA  +  +  ++FL   TA  V      G TA D+     R+    +   
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN----EVVS 154

Query: 209 LLRRAGA 215
           L++  GA
Sbjct: 155 LMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 53.5 bits (130), Expect = 6e-09
 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 15/107 (14%)

Query: 95  DGRNPLHLAAMRGHIDVLEEL------VRAKPDAASTRLIWV--GSTEV---LLENMGDF 143
              N L  AA RG ++ L  L      V A+     T L  +  G+ E+   LL    + 
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGAN- 62

Query: 144 ELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
              + KD  G  ++  A     ++ ++ L    A +VN     G   
Sbjct: 63  --PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA-DVNIEDNEGNLP 106

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 79.4 bits (197), Expect = 3e-18
 Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
             L  AA  G     + +L ++    + L+    +AL +    G   I   LL+      
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN 62

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAS----TRLIWV---GSTEV--LLE 138
              D  G +P+H AA  G +D L+ LV   A  +         +      G T V   L 
Sbjct: 63  V-QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 139 NMGDFELLNAKDDYGMTILLLAVADKQIEAIKFL 172
              D   L+ +D  G+T L LA+     + +  L
Sbjct: 122 AESD---LHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 64.7 bits (159), Expect = 7e-13
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ---VI 85
            +P+H AA  G  D  K ++     +    D   +  +H+A Q+G+  +V  L     + 
Sbjct: 69  TSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAESDL- 126

Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEELV 116
                  D  G  PL LA  RG  D+++ L 
Sbjct: 127 ----HRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 52.8 bits (128), Expect = 9e-09
 Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 16/107 (14%)

Query: 96  GRNPLHLAAMRGHIDVLEELV---RAKPDAA----STRLIWV--GSTEV---LLENMGDF 143
             + L  AA RG +  +  L+      PDA      T L  +  GST +   LL+     
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS- 60

Query: 144 ELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
              N +D  G + +  A     ++ +K L    A +VN     G   
Sbjct: 61  --PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA-DVNVPDGTGALP 104

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 80.1 bits (199), Expect = 4e-18
 Identities = 38/203 (18%), Positives = 70/203 (34%), Gaps = 33/203 (16%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           E    +           + L          DS   + L +A   G    +  L++     
Sbjct: 9   EIVEKIKDEKSINQNL-DFL------RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL 61

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL------VRAKPDAASTRLIW---VGSTEV---L 136
             D D++G   L  A     + + E+L      V  K  +  T L+W    G +E+   L
Sbjct: 62  -EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFL 120

Query: 137 LENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ 196
           LE+  +   +N ++  G T L++A    + E +K L      +++A    G TA      
Sbjct: 121 LEHGAN---VNDRNLEGETPLIVASKYGRSEIVKKL-LELGADISARDLTGLTAEASARI 176

Query: 197 SKRDIKDWDTGELLRRAGAISAK 219
             R     +  ++         +
Sbjct: 177 FGRQ----EVIKIF-----TEVR 190

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 51.2 bits (124), Expect = 5e-08
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 93  DVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIW---VGSTEV---LLENMGDFELL 146
           D +G     +   +     L+ L   +     T L+    +G       L+EN      L
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK---L 61

Query: 147 NAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
             KD  G T L+ AV + ++   + L  S    VN    +G T 
Sbjct: 62  EDKDIEGSTALIWAVKNNRLGIAEKL-LSKGSNVNTKDFSGKTP 104

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 78.7 bits (195), Expect = 6e-18
 Identities = 24/164 (14%), Positives = 44/164 (26%), Gaps = 27/164 (16%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              L  AA  G  +  + +L          +S     + +    G   + + LL    + 
Sbjct: 13  ADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMMM-GSARVAELLLLHGAEP 70

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
                     P+H AA  G +D                        VL         L+ 
Sbjct: 71  NCADPATLTRPVHDAAREGFLDT---------------------LVVLHRAGAR---LDV 106

Query: 149 KDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWD 192
           +D +G   + LA      +  ++L  +              A +
Sbjct: 107 RDAWGRLPVDLAEELGHRDVARYLRAAAG-GTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 69.0 bits (170), Expect = 2e-14
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 7/84 (8%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
            P+H AA  G  D    +     R+ +  D+     + +A + G+  + + L        
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAA----- 133

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLE 113
                 G N   + A  G  D+ +
Sbjct: 134 -AGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 21/139 (15%)

Query: 95  DGRNPLHLAAMRGHIDVLEELVR--AKPDAA----STRLIWV--GSTEV---LLENMGDF 143
              + L  AA RG ++ +  L+   A P+A        +  +  GS  V   LL +  + 
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE- 69

Query: 144 ELLNAKDDYGMTI-LLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIK 202
              N  D   +T  +  A  +  ++ +  L  + A  ++   A G    D+  +      
Sbjct: 70  --PNCADPATLTRPVHDAAREGFLDTLVVLHRAGA-RLDVRDAWGRLPVDLAEELGHR-- 124

Query: 203 DWDTGELLRRAGA-ISAKD 220
             D    LR A       +
Sbjct: 125 --DVARYLRAAAGGTRGSN 141

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 77.1 bits (191), Expect = 2e-17
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 26/144 (18%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           ET LH+A++ G     + +L          D    + LH A   G++ +V+ LLQ     
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
              T     +PLH AA  GH+D+                      ++LL         NA
Sbjct: 70  N-TTGYQNDSPLHDAAKNGHVDI---------------------VKLLLSYGAS---RNA 104

Query: 149 KDDYGMTILLLAVADKQIEAIKFL 172
            + +G+  +     +     +   
Sbjct: 105 VNIFGLRPVDYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 67.4 bits (166), Expect = 5e-14
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPLH A   GH    + +L  K  +      +  S LH A++ G+V IVK LL     +
Sbjct: 44  WTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR 102

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAS 124
            +  ++ G  P+          +L    + +  +AS
Sbjct: 103 -NAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 62.4 bits (153), Expect = 2e-12
 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 20/139 (14%)

Query: 92  TDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAA----STRLIW---VGSTEV---LLEN 139
           T+  G   LH+A+++G I  +E L++  + P+       T L      G  +V   LL++
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 140 MGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKR 199
                 +N       + L  A  +  ++ +K L +  A   NAV   G    D       
Sbjct: 66  KAL---VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA-SRNAVNIFGLRPVDYTDDESM 121

Query: 200 DIKDWDTGELLRRAGAISA 218
                    L  +  + SA
Sbjct: 122 K----SLLLLPEKNESSSA 136

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 74.7 bits (185), Expect = 8e-17
 Identities = 24/132 (18%), Positives = 38/132 (28%), Gaps = 26/132 (19%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +     A   G  D  K+ + +   +           LH A+  G + I++ LL    D 
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
            +  D     PL  A   GH+                        ++LL    D      
Sbjct: 67  NA-PDKHHITPLLSAVYEGHVSC---------------------VKLLLSKGAD---KTV 101

Query: 149 KDDYGMTILLLA 160
           K   G+T     
Sbjct: 102 KGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 72.0 bits (178), Expect = 7e-16
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 26/126 (20%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAS 124
               A + G +  VK  +    D  + T   GR PLH AA  G +++LE L+    D   
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD--- 65

Query: 125 TRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVT 184
                                +NA D + +T LL AV +  +  +K L +  A +     
Sbjct: 66  ---------------------INAPDKHHITPLLSAVYEGHVSCVKLLLSKGA-DKTVKG 103

Query: 185 ANGFTA 190
            +G TA
Sbjct: 104 PDGLTA 109

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 65.9 bits (162), Expect = 1e-13
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
            PLH AA  G  +  + +L +   I    D    + L  A  +G+V  VK LL    DK 
Sbjct: 42  KPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT 100

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLE 113
                DG         +    +L+
Sbjct: 101 V-KGPDGLTAFEATDNQAIKALLQ 123

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 76.1 bits (187), Expect = 2e-16
 Identities = 47/186 (25%), Positives = 70/186 (37%), Gaps = 18/186 (9%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            T LH A   GH +  + +L     +  + D    S LHIA+  G   IVKALL      
Sbjct: 41  RTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV 99

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL------VRAKPDAASTRLIWVGS------TEVL 136
            +  + +G  PLH AA +   ++   L        AK    +T +    +        +L
Sbjct: 100 -NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158

Query: 137 LENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ 196
           L         N +D  G T L LA  ++++E  KFL T  A  +        T   +   
Sbjct: 159 LFYKAS---TNIQDTEGNTPLHLACDEERVEEAKFLVTQGA-SIYIENKEEKTPLQVAKG 214

Query: 197 SKRDIK 202
               I 
Sbjct: 215 GLGLIL 220

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 73.7 bits (181), Expect = 2e-15
 Identities = 51/207 (24%), Positives = 81/207 (39%), Gaps = 29/207 (14%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV---IP 86
              ++A     ++  + IL  K       D    +ALH A   G+  IV+ LLQ+   + 
Sbjct: 9   MICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67

Query: 87  DKCSDTDVDGRNPLHLAAMRGHIDVLEEL------VRAKPDAASTRLIWVGS------TE 134
           DK    D  G +PLH+AA  G  ++++ L      V A      T L +  S        
Sbjct: 68  DK----DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV 123

Query: 135 VLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDIL 194
           +LLE   +    +AKD Y  T +  A A   ++ +  L    A   N     G T   + 
Sbjct: 124 MLLEGGAN---PDAKDHYDATAMHRAAAKGNLKMVHILLFYKA-STNIQDTEGNTPLHLA 179

Query: 195 AQSKRDIKDWDTGELLRRAGA-ISAKD 220
              +R     +  + L   GA I  ++
Sbjct: 180 CDEERV----EEAKFLVTQGASIYIEN 202

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 45.2 bits (107), Expect = 8e-06
 Identities = 39/147 (26%), Positives = 54/147 (36%), Gaps = 25/147 (17%)

Query: 87  DKCSDTDVDGRNPLHLAAMRGHIDVLEEL------VRAKPDAASTRLIWV---GSTEV-- 135
           + C    V      +LA      ++ E +             + T L W    G TE+  
Sbjct: 2   EGC----VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVE 57

Query: 136 -LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDIL 194
            LL+       +N KDD G + L +A +    E +K L    A  VNAV  NG T     
Sbjct: 58  FLLQLGVP---VNDKDDAGWSPLHIAASAGXDEIVKALLVKGA-HVNAVNQNGCTPLHYA 113

Query: 195 AQSKRDIKDWDTGELLRRAGA-ISAKD 220
           A   R     +   +L   GA   AKD
Sbjct: 114 ASKNRH----EIAVMLLEGGANPDAKD 136

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 74.8 bits (185), Expect = 3e-16
 Identities = 33/193 (17%), Positives = 59/193 (30%), Gaps = 37/193 (19%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
               +    GH             IA ++ S   +    A++K     +  LL+   D  
Sbjct: 16  MEYLIEWKDGHSPSWVPSS----YIAADVVSEYETPWWTAARKADEQALSQLLEDR-DVD 70

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAK 149
           +  D +GR  L   A  G    +  L  A  D                        L+ +
Sbjct: 71  A-VDENGRTALLFVAGLGSDKCVRLLAEAGAD------------------------LDHR 105

Query: 150 DD-YGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGE 208
           D   G+T L +A    + E ++ L    A ++      G TA ++  +  +         
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVEALVELGA-DIEVEDERGLTALELAREILKT----TPKG 160

Query: 209 LLRRAGA-ISAKD 220
              + G  I  + 
Sbjct: 161 NPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 73.7 bits (182), Expect = 6e-16
 Identities = 30/144 (20%), Positives = 48/144 (33%), Gaps = 26/144 (18%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           ETP   AA    E    ++L +   + + +D    +AL   +  G    V+ L +   D 
Sbjct: 45  ETPWWTAARKADEQALSQLL-EDRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 102

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
                  G   LH+AA     +V+E LV    D                        +  
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGAD------------------------IEV 138

Query: 149 KDDYGMTILLLAVADKQIEAIKFL 172
           +D+ G+T L LA    +       
Sbjct: 139 EDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 29/145 (20%), Positives = 44/145 (30%), Gaps = 26/145 (17%)

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAS---TRLIWV---GSTEVLLENMGDF 143
           S T  +G     +    GH            D  S   T           + L       
Sbjct: 8   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQAL------- 60

Query: 144 ELL------NAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTAN-GFTAWDILAQ 196
             L      +A D+ G T LL        + ++ L  + A +++      G TA  + A 
Sbjct: 61  SQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA-DLDHRDMRGGLTALHMAAG 119

Query: 197 SKRDIKDWDTGELLRRAGA-ISAKD 220
             R     +  E L   GA I  +D
Sbjct: 120 YVRP----EVVEALVELGADIEVED 140

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 78.1 bits (192), Expect = 3e-16
 Identities = 29/209 (13%), Positives = 66/209 (31%), Gaps = 35/209 (16%)

Query: 17  LILERPTVNCLS---ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRK-SSALHIASQK 72
           L+     V  +         +AA  GH      +    P     +   +   A  +A++ 
Sbjct: 114 LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN 173

Query: 73  GYVGIVKALLQVIPDKCS-DTDVDGRNPLHLAAMR-GHIDVLEELV--RAKPDAASTRLI 128
           G++ ++  L ++ P + +     +       AA+  GH +V+  L+        A     
Sbjct: 174 GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEF 233

Query: 129 WVGSTEV--LLENMGD-----------------FELLNA-KDDYGMTILLLAV---ADKQ 165
             G   V   +    +                 F+L+   +   G  +L   +    +  
Sbjct: 234 EYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVL 293

Query: 166 IEAIKFLTTSTAIE----VNAVTANGFTA 190
           ++ I+FL +   I+       +  +    
Sbjct: 294 LDDIRFLLSIPGIKALAPTATIPGDANEL 322

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 75.0 bits (184), Expect = 3e-15
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 3/112 (2%)

Query: 17  LILERPTVNCLSETPLHVAALLGHEDFAKEI--LPQKPRIAEELDSRKSSALHIASQKGY 74
           L  +       SE    VAA+ G       +  L     I + + +    A  +A++ G+
Sbjct: 81  LWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH 140

Query: 75  VGIVKALLQVIPDKC-SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST 125
           + ++  L ++ P +  +    +  +   LAA  GH+ VL  L    P  A+ 
Sbjct: 141 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA 192

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 63.8 bits (155), Expect = 1e-11
 Identities = 25/193 (12%), Positives = 52/193 (26%), Gaps = 31/193 (16%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEE-LDSRKSSALHIAS-QKGYVGIVKALLQVIP 86
                +AA  GH      +    P  A   + +    A   A+  +G+  ++  LL    
Sbjct: 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223

Query: 87  DK---------------------CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST 125
                                    +   +  +   L+   G  D++ +    +      
Sbjct: 224 MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLR 283

Query: 126 RLIWVGSTEVL-----LENMGDFELL---NAKDDYGMTILLLAVADKQIEAIKFLTTSTA 177
            LI      +L     L ++   + L            +L LA+      A   L +  +
Sbjct: 284 NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS 343

Query: 178 IEVNAVTANGFTA 190
           +       N +  
Sbjct: 344 VLALTKANNYYIN 356

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.3 bits (133), Expect = 8e-09
 Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 11/94 (11%)

Query: 30  TPLHVAALLGHEDFAKEI--LPQKPRI-----AEELDSRKSSALHIASQKGYVGIVKALL 82
             L        E    +I  L   P I        +    +  L +A + G  G    LL
Sbjct: 280 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339

Query: 83  QVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELV 116
            +     S   +   N  ++    G +D+    +
Sbjct: 340 SI----PSVLALTKANNYYINETGGRLDLRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 16/118 (13%), Positives = 31/118 (26%), Gaps = 19/118 (16%)

Query: 16  PLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKS-SALHIASQKG- 73
           P I               ++   G  D           +  + +  +    L    ++  
Sbjct: 242 PFIARHVNRLKEMHDAFKLSNPDGVFD-----------LVTKSECLQGFYMLRNLIRRND 290

Query: 74  --YVGIVKALLQVIPDKC----SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST 125
              +  ++ LL +   K     +    D    L LA   G+      L+      A T
Sbjct: 291 EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALT 348

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
             L +A  LG++     +L     I   L   K++  +I    G + +    L+
Sbjct: 321 ELLRLALRLGNQGACALLL----SIPSVLALTKANNYYINETGGRLDLRAVALE 370

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 73.2 bits (181), Expect = 3e-16
 Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 26/144 (18%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +  L  AA  G  +  +++L         L+      + +    G   + + LL    + 
Sbjct: 13  DAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP 70

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
                     P+H AA  G +D L  L RA                           L+ 
Sbjct: 71  NCADPATLTRPVHDAAREGFLDTLVVLHRAGAR------------------------LDV 106

Query: 149 KDDYGMTILLLAVADKQIEAIKFL 172
            D +G   + LA      +  ++L
Sbjct: 107 CDAWGRLPVDLAEEQGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 67.1 bits (165), Expect = 5e-14
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
            P+ V  + G    A+ +L           +  +  +H A+++G++  +  L +      
Sbjct: 47  RPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL- 104

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
              D  GR P+ LA  +GH D+   L  A  D
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 60.5 bits (148), Expect = 1e-11
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 20/135 (14%)

Query: 93  DVDGRNPLHLAAMRGHIDVLEELVR--AKPDAA----STRLIWV--GSTEV---LLENMG 141
                  L  AA RG ++ + +L+   A P+A        +  +  GS +V   LL +  
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGA 68

Query: 142 DFELLNAKDDYGMTI-LLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRD 200
           +    N  D   +T  +  A  +  ++ +  L  + A  ++   A G    D+  +    
Sbjct: 69  E---PNCADPATLTRPVHDAAREGFLDTLVVLHRAGA-RLDVCDAWGRLPVDLAEEQGHR 124

Query: 201 IKDWDTGELLRRAGA 215
               D    L  A  
Sbjct: 125 ----DIARYLHAATG 135

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 75.0 bits (185), Expect = 5e-16
 Identities = 29/186 (15%), Positives = 53/186 (28%), Gaps = 28/186 (15%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              L  AAL G  +  ++ + +      + +    +ALH A       IV  L+      
Sbjct: 22  LVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLIT----A 76

Query: 89  CSD---TDVDGRNPLHLAAMRGHIDVLEELVRAKPD---------------AASTRLIWV 130
            ++    D  G  PLH AA      +   LV+                       R  + 
Sbjct: 77  GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA 136

Query: 131 GSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
                L +       +   +   +  L    + +  + + F     ++ V        T 
Sbjct: 137 DCATYLADVEQS---MGLMNSGAVYALWDY-SAEFGDELSFR-EGESVTVLRRDGPEETD 191

Query: 191 WDILAQ 196
           W   A 
Sbjct: 192 WWWAAL 197

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 19/143 (13%)

Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAA----STRLIWV---GSTEV- 135
           P K     ++    L  AA+ G ++V+++ V+    P        T L       +  + 
Sbjct: 11  PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIV 70

Query: 136 --LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTAN-GFTAWD 192
             L+    +   +N+ D +G T L  A +         L    A  + A T + G TA++
Sbjct: 71  DFLITAGAN---VNSPDSHGWTPLHCAASCNDTVICMALVQHGA-AIFATTLSDGATAFE 126

Query: 193 ILAQSKRDIKDWDTGELLRRAGA 215
                +      D    L     
Sbjct: 127 KCDPYREGYA--DCATYLADVEQ 147

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 17/115 (14%), Positives = 27/115 (23%), Gaps = 33/115 (28%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIAS--QKGYVGIVKALLQV--- 84
           TPLH AA          ++     I     S  ++A       ++GY      L  V   
Sbjct: 89  TPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS 148

Query: 85  --IPDKCSDT--------------------------DVDGRNPLHLAAMRGHIDV 111
             + +  +                            D         AA+ G    
Sbjct: 149 MGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGY 203

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 72.4 bits (179), Expect = 7e-16
 Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 26/143 (18%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
             L  AA  G +D  + ++     +    D    + L++A+  G++ IV+ LL+   D  
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV- 73

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAK 149
           +  D  G  PLHLAA  GH+++                      EVLL++  D   +NA+
Sbjct: 74  NAVDAIGFTPLHLAAFIGHLEI---------------------AEVLLKHGAD---VNAQ 109

Query: 150 DDYGMTILLLAVADKQIEAIKFL 172
           D +G T   +++ +   +  + L
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 63.2 bits (155), Expect = 1e-12
 Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 26/126 (20%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAS 124
            L  A++ G    V+ L+    D  +  D  G  PL+LA   GH+++             
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEI------------- 62

Query: 125 TRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVT 184
                    EVLL+N  D   +NA D  G T L LA     +E  + L    A +VNA  
Sbjct: 63  --------VEVLLKNGAD---VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA-DVNAQD 110

Query: 185 ANGFTA 190
             G TA
Sbjct: 111 KFGKTA 116

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 60.5 bits (148), Expect = 1e-11
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 8/90 (8%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV---I 85
            TPL++A   GH +  + +L     +   +D+   + LH+A+  G++ I + LL+    +
Sbjct: 48  LTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106

Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
             +    D  G+    ++   G+ D+ E L
Sbjct: 107 NAQ----DKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 42.4 bits (101), Expect = 3e-05
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALL 82
            TPLH+AA +GH + A+ +L     +    D    +A  I+   G   + + L 
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 71.6 bits (177), Expect = 9e-16
 Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 26/129 (20%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPLH AA  GH +  K++L +   +        ++ LH+A++ G+  IVK LL    D 
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA 148
            +    DG  P HLA   GH ++                      ++L     D   +NA
Sbjct: 69  -NARSKDGNTPEHLAKKNGHHEI---------------------VKLLDAKGAD---VNA 103

Query: 149 KDDYGMTIL 157
           +        
Sbjct: 104 RSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 55.5 bits (135), Expect = 5e-10
 Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 16/110 (14%)

Query: 93  DVDGRNPLHLAAMRGHIDVLEELVR--AKPDAA----STRLIW---VGSTEV---LLENM 140
             DG  PLH AA  GH + +++L+   A  +A     +T L      G  E+   LL   
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 141 GDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
            D   +NA+   G T   LA  +   E +K L    A +VNA +      
Sbjct: 66  AD---VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA-DVNARSWGSSHH 111

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 69.3 bits (171), Expect = 3e-15
 Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH+AA  GH +  K +L     +    D    + LH+A++ G++ +VK LL+   D  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELV 116
           +  D +GR PLHLAA  GH++V++ L+
Sbjct: 63  A-KDKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 63.1 bits (155), Expect = 5e-13
 Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 25/108 (23%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAS 124
            LH+A++ G++ +VK LL+   D  +  D +GR PLHLAA  GH++V             
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEV------------- 50

Query: 125 TRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFL 172
                    ++LLE   D   +NAKD  G T L LA  +  +E +K L
Sbjct: 51  --------VKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLL 87

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 72.3 bits (178), Expect = 7e-15
 Identities = 34/206 (16%), Positives = 63/206 (30%), Gaps = 45/206 (21%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           E    + +    E                     +    I  + G+              
Sbjct: 2   EVNKIIGSRTAGEG--------------------AMEYLIEWKDGHSPSWVPSS----YI 37

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVR-AKPDAA----STRLIWV---GSTEV---LL 137
            +D   +   P   AA +     L +L+     DA      T L++V   GS +    L 
Sbjct: 38  AADVVSEYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLA 97

Query: 138 ENMGDFELLNAKD-DYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ 196
           E   D   L+ +D   G+T L +A    + E ++ L    A ++      G TA ++  +
Sbjct: 98  EAGAD---LDHRDMRGGLTALHMAAGYVRPEVVEALVELGA-DIEVEDERGLTALELARE 153

Query: 197 SKRDIKDWDTGELLRRAGA-ISAKDL 221
             +            + G  I  + +
Sbjct: 154 ILKT----TPKGNPMQFGRRIGLEKV 175

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 22/109 (20%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ----- 83
            T LH+AA     +  + ++     I E  D R  +AL +A +          +Q     
Sbjct: 112 LTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQFGRRI 170

Query: 84  ----------------VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELV 116
                              D+  +    G++  +L   +   D      
Sbjct: 171 GLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKG 219

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 13/102 (12%), Positives = 23/102 (22%), Gaps = 24/102 (23%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEE-------------------LDSRKSS--ALH 67
            T L +A  +         +    RI  E                   ++ R       +
Sbjct: 145 LTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEY 204

Query: 68  IASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI 109
           +   K            + +   D   D  + L  A     I
Sbjct: 205 LVRWKDGGDCEWVKGVHVAE---DVAKDYEDGLEYAVAESVI 243

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 72.5 bits (178), Expect = 7e-15
 Identities = 40/223 (17%), Positives = 68/223 (30%), Gaps = 61/223 (27%)

Query: 29  ETPLHVAALLGHEDFAKEILP----QKPRIAEELDSRKSS---ALHIAS---QKGYVGIV 78
              +  A    +    + +LP     K R+ +       +    L  A      G    +
Sbjct: 14  RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTI 73

Query: 79  KALLQV----------IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPDAAS-- 124
             LL V          +    +D+   G+  LH+A  R ++ ++  LV   A   AA+  
Sbjct: 74  ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANG 133

Query: 125 ----------------TRLIW---VGSTEV---LLENMGDFELLNAKDDYGMTILLLAV- 161
                             L          +   LL+N      ++A+D  G T+L   V 
Sbjct: 134 DFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVE 193

Query: 162 -ADKQIEAIKFLTT-------------STAIEVNAVTANGFTA 190
            AD  ++  KF+T+              T          G T 
Sbjct: 194 VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 70.2 bits (172), Expect = 6e-14
 Identities = 27/177 (15%), Positives = 49/177 (27%), Gaps = 31/177 (17%)

Query: 29  ETPLHVAALLGHEDFAKEILPQ-------------KPRIAEELDSRKSSALHIASQKGYV 75
           +T LH+A    +      ++               K              L +A+    +
Sbjct: 102 QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161

Query: 76  GIVKALLQVIPDKCS--DTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGST 133
            IVK LLQ           D  G   LH         V          +    ++ +G  
Sbjct: 162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVT---SMYNEILILG-- 216

Query: 134 EVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
              L       L    +  G+T L LA +  +I  + ++     ++      +    
Sbjct: 217 -AKLHPTLK--LEEITNRKGLTPLALAASSGKIGVLAYI-----LQRE---IHEPEC 262

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 58.3 bits (141), Expect = 6e-10
 Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 23/96 (23%)

Query: 30  TPLHVAALLGHEDFAKEILP---------------QKPRIAEELDSRKSSALHIASQKGY 74
           T LH    +                             ++ E  + +  + L +A+  G 
Sbjct: 186 TVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245

Query: 75  VGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHID 110
           +G++  +LQ         ++      H AA   H  
Sbjct: 246 IGVLAYILQR--------EIHEPECRHAAAHHHHHH 273

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.5 bits (167), Expect = 3e-13
 Identities = 35/197 (17%), Positives = 57/197 (28%), Gaps = 30/197 (15%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKG---YVGIVKALLQVI 85
            TPLH    + + +  K ++          D+   S L  A +       G  +ALL  +
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 190

Query: 86  PDKCSDTDVDGRNPLHLAAM-----------RGHIDVLEELV--------------RAKP 120
                  D   R  LH   +           + ++D+L   +              +   
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250

Query: 121 DAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEV 180
                        E L        +LNA+D  G T L +A     I  +  L    A + 
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA-DP 309

Query: 181 NAVTANGFTAWDILAQS 197
                +G    D  A  
Sbjct: 310 FIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.4 bits (133), Expect = 7e-09
 Identities = 28/208 (13%), Positives = 59/208 (28%), Gaps = 39/208 (18%)

Query: 28  SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
           ++   HV+     ++        +  +   +D   ++ LH  +    + +VK L+     
Sbjct: 97  NQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV----K 152

Query: 88  KCSD---TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFE 144
             S+    D  G + L  A    +                       + E LL+ +    
Sbjct: 153 HGSNRLYGDNMGESCLVKAVKSVNNYDSG------------------TFEALLDYLYP-- 192

Query: 145 LLNAKDDYGMTIL-----------LLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
            L  +D    TIL             A A   ++ +                N   +   
Sbjct: 193 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252

Query: 194 LAQSKRDIKDWDTGELLRRAGA-ISAKD 220
               +R     +  +L       ++A+D
Sbjct: 253 DKNGERKDSILENLDLKWIIANMLNAQD 280

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 63.0 bits (154), Expect = 9e-13
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 24  VNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
           +       L  AA  G +D  + ++     +    D   S+ LH+A++ G++ +VK LL+
Sbjct: 20  MGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLE 78

Query: 84  VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
              D  +  D  G+    ++   G+ D+ E L
Sbjct: 79  AGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 59.1 bits (144), Expect = 3e-11
 Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 29/138 (21%)

Query: 35  AALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
            +   H   +  ++P+   +     S     L  A++ G    V+ L+    D  +  D 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDK 55

Query: 95  DGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM 154
           +G  PLHLAA  GH++V                      ++LLE   D   + A+D +G 
Sbjct: 56  NGSTPLHLAARNGHLEV---------------------VKLLLEAGAD---VXAQDKFGK 91

Query: 155 TILLLAVADKQIEAIKFL 172
           T   +++ +   +  + L
Sbjct: 92  TAFDISIDNGNEDLAEIL 109

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 64.4 bits (157), Expect = 5e-12
 Identities = 38/221 (17%), Positives = 61/221 (27%), Gaps = 41/221 (18%)

Query: 24  VNCLSETPLHVAA----LLGHEDFAKEILPQKPRIAEELDSRKSS---ALHIA---SQKG 73
           +   +   L          G E     +L  K R+ +E     S+    L  A      G
Sbjct: 1   MKVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAG 60

Query: 74  YVGIVKALLQVIPD----------KCSDTDVDGRNPLHLAAMRGHIDVLEELVR--AKPD 121
               +  LL +                D    G+  LH+A  R     +E LV   A   
Sbjct: 61  RNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH 120

Query: 122 AASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTT--STAIE 179
           A +    +    E                 +G   L LA    Q   + +LT       +
Sbjct: 121 AQARGRFFQPKDE------------GGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD 168

Query: 180 VNAVTANGFTAWDILAQSKRDIKD-----WDTGELLRRAGA 215
           +    + G T    L     + ++         +LL    A
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA 209

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 64.4 bits (157), Expect = 5e-12
 Identities = 34/212 (16%), Positives = 59/212 (27%), Gaps = 54/212 (25%)

Query: 29  ETPLHVAALL---GHEDFAKEILPQKPRIAE----------ELDSRKSSALHIASQKGYV 75
           +T L  A L    G  D    +L    +             ++  R  +ALHIA ++   
Sbjct: 47  KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCK 106

Query: 76  GIVKALLQ-------------VIPDKCSDTDVDGRNPLHLAAMRGHID------------ 110
             V+ L++               P         G  PL LAA                  
Sbjct: 107 HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166

Query: 111 ------------VLEELVRAKPDAASTRLIWVGSTEVLLENMGD----FELLNAKDDYGM 154
                       VL  LV    +            ++LL           L    ++ G+
Sbjct: 167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGL 226

Query: 155 TILLLAVADKQIEAIKFLTTSTAIEVNAVTAN 186
           + L++A    +I   + +      +  A   +
Sbjct: 227 SPLMMAAKTGKIGIFQHIIRREIADAAAHHHH 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 58.1 bits (140), Expect = 6e-10
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 28  SETPLHVAALLGHEDFAK--EILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVI 85
            ET LH+A            + L Q     ++   + S+ALH          +K LL+  
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228

Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAK 119
                  +  G  PL +A    H    E L +A 
Sbjct: 229 AS-IEIANESGETPLDIAKRLKHEHCEELLTQAL 261

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 26/128 (20%)

Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFEL 145
               ++        LHLA                          +   + L++N G+   
Sbjct: 159 KIPLANGHEPDETALHLAVRSVD------------------RTSLHIVDFLVQNSGN--- 197

Query: 146 LNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWD 205
           L+ +   G T L         E +K L    A  +     +G T  DI  + K +     
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKA-SIEIANESGETPLDIAKRLKHE----H 252

Query: 206 TGELLRRA 213
             ELL +A
Sbjct: 253 CEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 28/117 (23%)

Query: 59  DSRKSSALHIASQKG---YVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
                +ALH+A +      + IV  L+Q            G   LH   +  + + L+ L
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 116 VRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFL 172
           +R K                          +   ++ G T L +A   K     + L
Sbjct: 225 LRGKAS------------------------IEIANESGETPLDIAKRLKHEHCEELL 257

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 28  SETPLHVAALLGHED--FAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVI 85
            E  LH+A  + ++      + + Q     +   +  ++ALH A+       +K LL+  
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249

Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
                  +  G   L +A  + H +  E L +A+  
Sbjct: 250 ALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 28/125 (22%)

Query: 51  KPRIAEELDSRKSSALHIASQKGYVG---IVKALLQVIPDKCSDTDVDGRNPLHLAAMRG 107
           +P    +  + +   LH+A +        +V  ++Q           DG   LH AA+  
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYN 237

Query: 108 HIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIE 167
             D L+ L++ +                          +   ++ G T L +A      E
Sbjct: 238 QPDCLKLLLKGRAL------------------------VGTVNEAGETALDIARKKHHKE 273

Query: 168 AIKFL 172
             + L
Sbjct: 274 CEELL 278

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 43.6 bits (102), Expect = 6e-05
 Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 3/124 (2%)

Query: 28  SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
           + TPL  A          E L Q      + DS     LH A+  G+ G+    L+   D
Sbjct: 235 NATPLIQATAANSLLAC-EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293

Query: 88  KCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLN 147
                D +GR+PL +A    + D+   L+R      +         E  L+   DF L+ 
Sbjct: 294 -LGARDSEGRDPLTIAMETANADI-VTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMA 351

Query: 148 AKDD 151
           + D 
Sbjct: 352 SDDP 355

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 50/295 (16%), Positives = 98/295 (33%), Gaps = 70/295 (23%)

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDK-------------------CSDTDVDGRNP 99
           D++  +  +++  + Y+ + +ALL++ P K                   C    V  +  
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 100 -----LHLAAMRGHIDVLEEL----VRAKPDAASTRLIWVGSTEVLLENMGDF--ELLNA 148
                L+L        VLE L     +  P+  S R     + ++ + ++      LL +
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 149 KDDYGMTILLLA-VADKQ-IEAIKF-----LTTSTAIEVNAVTANGFTAWDILAQSKRDI 201
           K  Y   +L+L  V + +   A        LTT      + ++A   T   +   S    
Sbjct: 241 K-PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 202 KDWDTGELLRRAGAISAKDLQLP-----VNELAVT----QTNSVTSHENNQKHEGKKDL- 251
            D +   LL +      +D  LP      N   ++          +  +N KH     L 
Sbjct: 300 PD-EVKSLLLKYLDCRPQD--LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 252 ---KGTPWNLDDWLEKKLNAAMVVASVISTMGFQAAVD-PPQSPELAASSFVVWN 302
              + +   L+    +K+   + V        F  +   P     L+    ++W 
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSV--------FPPSAHIPTIL--LS----LIWF 397

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 13/95 (13%)

Query: 32  LHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIA---SQKGYVGIVKALLQ--VIP 86
           L V     +     + LP       +  + +   LH+A   + +  + +V  ++Q     
Sbjct: 146 LSVLEAFANGQDFGQPLP-----GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL 200

Query: 87  DKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
           D       DG   LH AA+    D L+ L++ +  
Sbjct: 201 DA---KAADGNTALHYAALYNQPDCLKLLLKGRAL 232

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	345
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.98
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.3e-36  Score=246.10  Aligned_cols=158  Identities=31%  Similarity=0.416  Sum_probs=149.2

Q ss_pred             cHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcH
Q 043760           30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI  109 (345)
Q Consensus        30 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  109 (345)
                      ++|+.||..|+.++|++|++.|+++ +.+|..|+||||+|+..++.+++++|+++|+++ +.+|..|+||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence            4799999999999999999999998 999999999999999999999999999999999 89999999999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCc
Q 043760          110 DVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFT  189 (345)
Q Consensus       110 ~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T  189 (345)
                      +++++|+++|++                        +|.+|..|+||||+|+..|+.+++++|++. |++++.+|.+|+|
T Consensus        84 ~~v~~Ll~~gad------------------------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~T  138 (169)
T 4gpm_A           84 EVVKLLISKGAD------------------------VNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRT  138 (169)
T ss_dssp             HHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCC
T ss_pred             HHHHHHHHCcCC------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCC
Confidence            999999999998                        899999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHhcCCCCchhhHHHHHHHcccccc
Q 043760          190 AWDILAQSKRDIKDWDTGELLRRAGAISA  218 (345)
Q Consensus       190 ~L~~a~~~~~~~~~~~i~~~L~~~ga~~~  218 (345)
                      |||+|+.    .++.+++++|+++||+..
T Consensus       139 pL~~A~~----~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          139 PLDLARE----HGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HHHHHHH----TTCHHHHHHHHTC-----
T ss_pred             HHHHHHH----cCCHHHHHHHHHCCCCcC
Confidence            9999999    889999999999999874

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.9e-36  Score=265.44  Aligned_cols=200  Identities=23%  Similarity=0.204  Sum_probs=164.5

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++|+.|++.++........+..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|
T Consensus        19 ~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~L   97 (282)
T 1oy3_D           19 HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVL   97 (282)
T ss_dssp             TTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCcchhHhh
Confidence            57888999999887763322334788899999999999999999999988887 78888899999999999999999999


Q ss_pred             HhhCCCC----------------------------------------------CcCCCCCCCcHHHHHHHcCcHHHHHHH
Q 043760           82 LQVIPDK----------------------------------------------CSDTDVDGRNPLHLAAMRGHIDVLEEL  115 (345)
Q Consensus        82 l~~~~~~----------------------------------------------~~~~d~~g~tpLh~A~~~g~~~iv~~L  115 (345)
                      ++++++.                                              .+..+..|.||||+|+..|+.+++++|
T Consensus        98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  177 (282)
T 1oy3_D           98 LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL  177 (282)
T ss_dssp             SSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHH
Confidence            8877651                                              255677889999999999999999999


Q ss_pred             HhcCCCcccccccCCccHHHHHHhcCCcccccccCC-CCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHH
Q 043760          116 VRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDD-YGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDIL  194 (345)
Q Consensus       116 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a  194 (345)
                      ++.|++                        ++.++. .|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|
T Consensus       178 l~~g~~------------------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A  232 (282)
T 1oy3_D          178 RDAGAD------------------------LNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSA  232 (282)
T ss_dssp             HHHTCC------------------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred             HHcCCC------------------------CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCCHHHHH
Confidence            988887                        788875 499999999999999999999999 999999999999999999


Q ss_pred             HhcCCCCchhhHHHHHHHcccccccccCCccchhhhc
Q 043760          195 AQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELAVT  231 (345)
Q Consensus       195 ~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  231 (345)
                      +.    .++.+++++|+++||++.........++...
T Consensus       233 ~~----~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a  265 (282)
T 1oy3_D          233 LL----RPNPILARLLRAHGAPEPEDGGDKLSPCSSS  265 (282)
T ss_dssp             HT----SSCHHHHHHHHHTTCCCCCCC----------
T ss_pred             HH----cCCcHHHHHHHHcCCCcCcCCCccccccccc
Confidence            99    8899999999999999876555555554433

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=6.5e-35  Score=264.86  Aligned_cols=208  Identities=25%  Similarity=0.263  Sum_probs=178.1

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCc---------------------------
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRI---------------------------   54 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~---------------------------   54 (345)
                      +|++++|+.||++|+++....  +..|+||||+||..|+.++|++|+++|+++                           
T Consensus        35 ~g~~~~V~~LL~~Gadvn~~~--~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (337)
T 4g8k_A           35 NEDVDLVQQLLEGGANVNFQE--EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFL  112 (337)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCC--TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCccC--CCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhh
Confidence            699999999999999876542  456999999999999999999999988754                           


Q ss_pred             -----ccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCC---------cCCCCCCCcHHHHHHHcCcHHHHHHHHhc-C
Q 043760           55 -----AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC---------SDTDVDGRNPLHLAAMRGHIDVLEELVRA-K  119 (345)
Q Consensus        55 -----~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~---------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~  119 (345)
                           ++.+|..|.||||+|+..|+.+++++|+++|+++.         ...+..|.||||+|+..|+.+++++|++. |
T Consensus       113 ~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~g  192 (337)
T 4g8k_A          113 SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG  192 (337)
T ss_dssp             TTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSC
T ss_pred             hccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccC
Confidence                 25577889999999999999999999999998872         12455799999999999999999999964 6


Q ss_pred             CCcccccccCCcc-----------------HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccc
Q 043760          120 PDAASTRLIWVGS-----------------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNA  182 (345)
Q Consensus       120 ~~~~~~~~~~~~~-----------------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  182 (345)
                      +++... +..+.+                 ++.|++.+.+   +|.+|..|+||||+|+..|+.+++++|++..+++++.
T Consensus       193 ad~n~~-d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad---~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~  268 (337)
T 4g8k_A          193 ADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND  268 (337)
T ss_dssp             CCTTCC-CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC---TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTC
T ss_pred             CCcCcc-CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccC
Confidence            665433 222222                 4566777766   8999999999999999999999999999988999999


Q ss_pred             cCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          183 VTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       183 ~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      +|.+|+||||+|+.    .++.+++++|+++||+++.
T Consensus       269 ~d~~G~TpL~~A~~----~g~~~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          269 TDSDGKTALLLAVE----LKLKKIAELLCKRGASTDC  301 (337)
T ss_dssp             BCTTSCBHHHHHHH----TTCHHHHHHHHTTSCSSTT
T ss_pred             cCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            99999999999999    8899999999999998753

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8.3e-35  Score=249.72  Aligned_cols=188  Identities=25%  Similarity=0.300  Sum_probs=174.7

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+++.++.|++.++.....  .+..|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|
T Consensus        16 ~g~~~~v~~ll~~~~~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L   92 (231)
T 3aji_A           16 SGKLDELKERILADKSLATR--TDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKAL   92 (231)
T ss_dssp             HTCHHHHHHHHHHCGGGGGC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             hCCHHHHHHHHHhchhhhhc--CCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHcCHHHHHHHH
Confidence            58999999999998776544  4889999999999999999999999999988 88899999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      +++|+++ +..|..|.||||+|+..|+.+++++|++.+.+                        ++.+|..|.||||+|+
T Consensus        93 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~  147 (231)
T 3aji_A           93 LVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------------------------PDAKDHYDATAMHRAA  147 (231)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHH
T ss_pred             HHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------------CCCcCCCCCcHHHHHH
Confidence            9999999 78999999999999999999999999999988                        8888999999999999


Q ss_pred             HcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccC
Q 043760          162 ADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQ  222 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~  222 (345)
                      ..|+.+++++|++. |++++.+|..|+||||+|+.    .++.+++++|++.|+++.....
T Consensus       148 ~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~~~~  203 (231)
T 3aji_A          148 AKGNLKMVHILLFY-KASTNIQDTEGNTPLHLACD----EERVEEAKFLVTQGASIYIENK  203 (231)
T ss_dssp             HHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSCCCCT
T ss_pred             HcCCHHHHHHHHhc-CCCccccCCCCCCHHHHHHH----CCCHHHHHHHHHCCCCCCCCCC
Confidence            99999999999998 89999999999999999999    8889999999999998865333

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.7e-34  Score=245.94  Aligned_cols=195  Identities=21%  Similarity=0.205  Sum_probs=176.7

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCC--CCcccccCCCCchHHHHHHHcCCHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQK--PRIAEELDSRKSSALHIASQKGYVGIVK   79 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~A~~~g~~~iv~   79 (345)
                      .|+.++++.|++.++.....  .+..|+||||+|+..|+.+++++|++.+  .++....|..|.||||+|+..|+.++++
T Consensus        12 ~g~~~~v~~Ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~   89 (228)
T 2dzn_A           12 ENEFFKVQELLHSKPSLLLQ--KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVK   89 (228)
T ss_dssp             TTCHHHHHHHHHHCGGGTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred             hCCHHHHHHHHhcCcccccc--CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHH
Confidence            68999999999999887653  3889999999999999999999999999  6663338899999999999999999999


Q ss_pred             HHHhhC--CCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHH
Q 043760           80 ALLQVI--PDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTIL  157 (345)
Q Consensus        80 ~Ll~~~--~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~L  157 (345)
                      +|+++|  +++ +..+..|.||||+|+..|+.+++++|++.|++                        ++.+|..|+|||
T Consensus        90 ~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------------------~~~~~~~g~t~L  144 (228)
T 2dzn_A           90 SLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS------------------------VRIKDKFNQIPL  144 (228)
T ss_dssp             HHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------------------SCCCCTTSCCHH
T ss_pred             HHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC------------------------ccccCCCCCCHH
Confidence            999998  777 78899999999999999999999999999988                        889999999999


Q ss_pred             HHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHH-HcccccccccCCccch
Q 043760          158 LLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLR-RAGAISAKDLQLPVNE  227 (345)
Q Consensus       158 h~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~-~~ga~~~~~~~~~~~~  227 (345)
                      |+|+..|+.+++++|++.+.++++.+|..|+||||+|+.    .++.+++++|+ +.|++..........+
T Consensus       145 ~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~~ga~~~~~~~~g~t~  211 (228)
T 2dzn_A          145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA----EGHGDAAVLLVEKYGAEYDLVDNKGAKA  211 (228)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCSCCBCTTSCBG
T ss_pred             HHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHH----cCCHHHHHHHHHhcCCCCCccCCCCCcH
Confidence            999999999999999999449999999999999999999    88999999999 8999886644444443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.7e-34  Score=246.50  Aligned_cols=205  Identities=22%  Similarity=0.220  Sum_probs=156.6

Q ss_pred             CCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHH
Q 043760            3 GSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALL   82 (345)
Q Consensus         3 g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll   82 (345)
                      |+.++++.|++.++++...  .+..|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|+
T Consensus         2 g~~~~i~~Ll~~g~~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQ--TDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ---CCEETTEETTCCTTCC--CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCcccc--cCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            6777888888888876554  2677888888888888888888888888887 778888888888888888888888888


Q ss_pred             hhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc-------------HHHHHHhcCCccccccc
Q 043760           83 QVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS-------------TEVLLENMGDFELLNAK  149 (345)
Q Consensus        83 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~~  149 (345)
                      ++++...+..+..|.||||+|+..|+.+++++|++.+++.... +..+.+             ++.|++.+.+   ++.+
T Consensus        79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~  154 (223)
T 2f8y_A           79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQ  154 (223)
T ss_dssp             HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCC
T ss_pred             HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCc
Confidence            8887444778888888888888888888888888888774332 222222             5555555544   6777


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          150 DDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       150 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      |..|.||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+.    .++.+++++|++.|+....
T Consensus       155 ~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~----~~~~~i~~~L~~~g~~~~~  219 (223)
T 2f8y_A          155 NNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQE----RMHHDIVRLLDEYNLVRSP  219 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCSSCC
T ss_pred             CCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCccccccCCCHHHHHHH----hcchHHHHHHHHcCCCccc
Confidence            77788888888888888888888877 77888888888888888877    6777788888887776543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.8e-34  Score=253.39  Aligned_cols=205  Identities=20%  Similarity=0.184  Sum_probs=135.7

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|++++|+.|++.++++....  +..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|
T Consensus        15 ~g~~~~v~~Ll~~g~~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L   91 (285)
T 1wdy_A           15 NEDVDLVQQLLEGGANVNFQE--EEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKLF   91 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCC--TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCccccc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            578888888888887755432  667888888888888888888888888887 77788888888888888888888888


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccc---------ccCCcc-------------HHHHHHh
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTR---------LIWVGS-------------TEVLLEN  139 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~---------~~~~~~-------------~~~l~~~  139 (345)
                      +++|+++ +..|..|.||||+|+..|+.+++++|++.+++.....         +..+.+             ++.|++.
T Consensus        92 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  170 (285)
T 1wdy_A           92 LSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE  170 (285)
T ss_dssp             HHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            8888887 6778888888888888888888888888877654331         112222             4444443


Q ss_pred             -cCCcccccccCCCCCCHHHHHHHcCC----HHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHH-c
Q 043760          140 -MGDFELLNAKDDYGMTILLLAVADKQ----IEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRR-A  213 (345)
Q Consensus       140 -~~~~~~~~~~d~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~-~  213 (345)
                       +.+   ++.+|..|+||||+|+..++    .+++++|++. |++++.+|..|+||||+|+.    .++.+++++|++ .
T Consensus       171 ~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~~  242 (285)
T 1wdy_A          171 MGAD---VNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVE----KKHLGLVQRLLEQE  242 (285)
T ss_dssp             SCCC---TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHH----TTCHHHHHHHHHSS
T ss_pred             cCCC---CCccCCCCCCHHHHHHHccccchHHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHH----cCCHHHHHHHHhcc
Confidence             222   44444455555555555544    4455555544 44555555555555555554    444455555554 4


Q ss_pred             ccccc
Q 043760          214 GAISA  218 (345)
Q Consensus       214 ga~~~  218 (345)
                      |++.+
T Consensus       243 g~~~~  247 (285)
T 1wdy_A          243 HIEIN  247 (285)
T ss_dssp             SCCTT
T ss_pred             CCCcc
Confidence            44443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4.2e-35  Score=255.51  Aligned_cols=187  Identities=23%  Similarity=0.243  Sum_probs=157.5

Q ss_pred             CCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHH
Q 043760            3 GSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALL   82 (345)
Q Consensus         3 g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll   82 (345)
                      ++.++++.|++.++++...  .|..|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|+
T Consensus        34 ~~~~~v~~Ll~~g~~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll  110 (253)
T 1yyh_A           34 DAPAVISDFIYQGASLHNQ--TDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI  110 (253)
T ss_dssp             ------------------C--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CChHHHHHHHHccCCcccc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            4889999999999887654  3788999999999999999999999999998 889999999999999999999999999


Q ss_pred             hhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHH
Q 043760           83 QVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVA  162 (345)
Q Consensus        83 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~  162 (345)
                      ++++...+..+..|.||||+|+..|+.+++++|++.+++                        ++.+|..|+||||+|+.
T Consensus       111 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------~~~~d~~g~t~L~~A~~  166 (253)
T 1yyh_A          111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------------------------VNAVDDLGKSALHWAAA  166 (253)
T ss_dssp             HSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC------------------------TTCBCTTSCBHHHHHHH
T ss_pred             HcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC------------------------CCCcCCCCCCHHHHHHH
Confidence            999844488999999999999999999999999999998                        88899999999999999


Q ss_pred             cCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccccc
Q 043760          163 DKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDL  221 (345)
Q Consensus       163 ~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~  221 (345)
                      .|+.+++++|++. |++++.+|..|+||||+|+.    .++.+++++|++.|++.....
T Consensus       167 ~~~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~~~d  220 (253)
T 1yyh_A          167 VNNVDAAVVLLKN-GANKDMQNNREETPLFLAAR----EGSYETAKVLLDHFANRDITD  220 (253)
T ss_dssp             HTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTCCC
T ss_pred             cCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCccccc
Confidence            9999999999999 89999999999999999999    788999999999999876533

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.1e-34  Score=260.82  Aligned_cols=213  Identities=22%  Similarity=0.184  Sum_probs=184.2

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      +|+++.|+.|+.......+  ..|..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|
T Consensus        34 ~g~~~~v~~ll~~~~~~~~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~iv~~L  110 (351)
T 3utm_A           34 SGNEEKLMALLTPLNVNCH--ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELL  110 (351)
T ss_dssp             HTCHHHHHHHCCTTTTTCC--CSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHhcCCCcc--cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCCCHHHHHHH
Confidence            5899999999987443322  23888999999999999999999999999998 88999999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccc----------------------------------
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRL----------------------------------  127 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~----------------------------------  127 (345)
                      +++|+++ +..|..|.||||+|+..|+.+++++|+++|+++.....                                  
T Consensus       111 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  189 (351)
T 3utm_A          111 LKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREA  189 (351)
T ss_dssp             HHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhc
Confidence            9999999 78999999999999999999999999999887543211                                  


Q ss_pred             -------------------cCCc----------------cHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHh
Q 043760          128 -------------------IWVG----------------STEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFL  172 (345)
Q Consensus       128 -------------------~~~~----------------~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~L  172 (345)
                                         ..+.                .++.|++.+.+   ++.+|..|+||||+|+..|+.+++++|
T Consensus       190 ~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~L  266 (351)
T 3utm_A          190 DLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN---VNEKNKDFMTPLHVAAERAHNDVMEVL  266 (351)
T ss_dssp             CHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC---cCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence                               0111                15566666665   889999999999999999999999999


Q ss_pred             hhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccc
Q 043760          173 TTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVN  226 (345)
Q Consensus       173 l~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~  226 (345)
                      ++. |++++.+|..|+||||+|+.    .++.+++++|++.|+++.........
T Consensus       267 l~~-ga~~n~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~~~~~g~t  315 (351)
T 3utm_A          267 HKH-GAKMNALDSLGQTALHRAAL----AGHLQTCRLLLSYGSDPSIISLQGFT  315 (351)
T ss_dssp             HHT-TCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             HHC-CCCCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHcCCCCCCcCCCCCC
Confidence            999 99999999999999999999    88999999999999988654433333

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=6e-35  Score=249.27  Aligned_cols=173  Identities=23%  Similarity=0.239  Sum_probs=152.5

Q ss_pred             cCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHh
Q 043760           38 LGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVR  117 (345)
Q Consensus        38 ~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  117 (345)
                      .|+.+++++|+++++++....|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            367889999999999986667999999999999999999999999999999 7899999999999999999999999999


Q ss_pred             cCCCcccccccCCcc-------------HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccC
Q 043760          118 AKPDAASTRLIWVGS-------------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVT  184 (345)
Q Consensus       118 ~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n  184 (345)
                      .++......+..+.+             ++.|++.+.+   ++.+|..|+||||+|+..|+.+++++|++. |++++.+|
T Consensus        80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~  155 (223)
T 2f8y_A           80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQN  155 (223)
T ss_dssp             BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCC
T ss_pred             cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC---CcCcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcC
Confidence            988544444444544             7777777666   888999999999999999999999999999 89999999


Q ss_pred             CCCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          185 ANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       185 ~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      ..|.||||+|+.    .++.+++++|++.|++...
T Consensus       156 ~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~  186 (223)
T 2f8y_A          156 NREETPLFLAAR----EGSYETAKVLLDHFANRDI  186 (223)
T ss_dssp             TTCCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             CCCcCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence            999999999999    7889999999999998754

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8.3e-34  Score=244.42  Aligned_cols=193  Identities=22%  Similarity=0.218  Sum_probs=167.8

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++++.|++.+.++...   +..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|
T Consensus        21 ~g~~~~v~~Ll~~g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~L   96 (237)
T 3b7b_A           21 AGHVDICHMLVQAGANIDTC---SEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYL   96 (237)
T ss_dssp             HTCHHHHHHHHHTTCCTTCC---CTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCcHHHHHHHHHcCCCcCcc---CCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHH
Confidence            47888899999988775543   778899999999999999999999888887 77888899999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      ++.++...+..+..|.||||+|+..|+.+++++|++.|++                        ++.+|..|.||||+|+
T Consensus        97 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~  152 (237)
T 3b7b_A           97 LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD------------------------INIRDNEENICLHWAA  152 (237)
T ss_dssp             HTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHH
T ss_pred             HhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------------------------CCccCCCCCCHHHHHH
Confidence            9888433377888899999999999999999999988887                        8889999999999999


Q ss_pred             HcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccch
Q 043760          162 ADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNE  227 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~  227 (345)
                      ..|+.+++++|++. |++++.+|..|.||||+|+.    .++.+++++|++.|++..........+
T Consensus       153 ~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~~d~~g~t~  213 (237)
T 3b7b_A          153 FSGCVDIAEILLAA-KCDLHAVNIHGDSPLHIAAR----ENRYDCVVLFLSRDSDVTLKNKEGETP  213 (237)
T ss_dssp             HHCCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred             HCCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH----hCCHhHHHHHHHcCCCCCccCCCCCCH
Confidence            99999999999999 89999999999999999999    889999999999999886544444444

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=4e-34  Score=240.20  Aligned_cols=179  Identities=24%  Similarity=0.309  Sum_probs=165.4

Q ss_pred             CCCHHHHHHHHhcCC-ccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHH
Q 043760            2 AGSVNTLLELRQQDP-LILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKA   80 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~-~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~   80 (345)
                      .|+.+.++.|++.++ ++..   .+..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++
T Consensus        15 ~g~~~~v~~ll~~~~~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~   90 (201)
T 3hra_A           15 QRDTKKVKEILQDTTYQVDE---VDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAY   90 (201)
T ss_dssp             TTCHHHHHHHHTCTTCCTTC---CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             hccHHHHHHHHHcCCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            689999999999987 4333   3889999999999999999999999999998 8899999999999999999999999


Q ss_pred             HHhhCC-CCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcC-CCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHH
Q 043760           81 LLQVIP-DKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAK-PDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILL  158 (345)
Q Consensus        81 Ll~~~~-~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh  158 (345)
                      |++.+. ++ +..+..|.||||+|+..|+.+++++|++.+ .+                        ++.+|..|+||||
T Consensus        91 Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------------~~~~~~~g~t~L~  145 (201)
T 3hra_A           91 MLKHATPDL-NKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED------------------------IDFQNDFGYTALI  145 (201)
T ss_dssp             HHHHSCCCT-TCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC------------------------TTCCCTTSCCHHH
T ss_pred             HHhccCccc-ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------------------------cCCCCCCCCCHHH
Confidence            996554 55 889999999999999999999999999998 55                        8899999999999


Q ss_pred             HHHHcCC-----HHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcc
Q 043760          159 LAVADKQ-----IEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAG  214 (345)
Q Consensus       159 ~A~~~g~-----~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~g  214 (345)
                      +|+..++     .+++++|++. |++++.+|..|+||||+|+.    .++.+++++|++.|
T Consensus       146 ~A~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          146 EAVGLREGNQLYQDIVKLLMEN-GADQSIKDNSGRTAMDYANQ----KGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHSSCCSHHHHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHTCC
T ss_pred             HHHHhccchhhHHHHHHHHHHC-CCCCCccCCCCCCHHHHHHH----cCCHhHHHHHHhcC
Confidence            9999998     9999999999 89999999999999999999    88999999999876

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.1e-33  Score=244.14  Aligned_cols=186  Identities=23%  Similarity=0.260  Sum_probs=163.6

Q ss_pred             CCCHHHHHHHHh----cCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHH
Q 043760            2 AGSVNTLLELRQ----QDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGI   77 (345)
Q Consensus         2 ~g~~~~v~~ll~----~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i   77 (345)
                      .|++++++.|++    .+.++..   .|..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.++
T Consensus        19 ~g~~~~v~~Ll~~~~~~~~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~   94 (241)
T 1k1a_A           19 QGNLPAVHRLVNLFQQGGRELDI---YNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTC   94 (241)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCSCC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCCCc---ccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHH
Confidence            588888888887    4555433   3788999999999999999999999988887 7788899999999999999999


Q ss_pred             HHHHHhhCC----CCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccC-CC
Q 043760           78 VKALLQVIP----DKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKD-DY  152 (345)
Q Consensus        78 v~~Ll~~~~----~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d-~~  152 (345)
                      +++|++.++    ++ +..+..|.||||+|+..|+.+++++|++.+++                        ++..+ ..
T Consensus        95 ~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------------------~~~~~~~~  149 (241)
T 1k1a_A           95 LRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGAD------------------------IDAVDIKS  149 (241)
T ss_dssp             HHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------------------TTCCCTTT
T ss_pred             HHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC------------------------cccccccC
Confidence            999999887    55 67788899999999999999999999998887                        77777 78


Q ss_pred             CCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccccc
Q 043760          153 GMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDL  221 (345)
Q Consensus       153 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~  221 (345)
                      |.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.    .++.+++++|++.|+++....
T Consensus       150 g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~~~  213 (241)
T 1k1a_A          150 GRSPLIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSALHSASG----RGLLPLVRTLVRSGADSSLKN  213 (241)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHhcCCCCCCcC
Confidence            99999999999999999999999 99999999999999999999    788999999999999886533

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=253.79  Aligned_cols=199  Identities=22%  Similarity=0.195  Sum_probs=152.8

Q ss_pred             CCCHHHHHHHHhcCCcccc-----CCCCCCCCCcHHHHHHHcCCH-HHHHHHhcCCCCcccccCCCCchHHHHHHHcCCH
Q 043760            2 AGSVNTLLELRQQDPLILE-----RPTVNCLSETPLHVAALLGHE-DFAKEILPQKPRIAEELDSRKSSALHIASQKGYV   75 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~-----~~~~~~~g~t~Lh~Aa~~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~   75 (345)
                      +|++++|+.||+.+.....     ....+..|.||||.|+..++. .++++|++.|.++ +.+|..|+||||+|+..|+.
T Consensus        21 ~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpLh~A~~~g~~   99 (269)
T 4b93_B           21 DGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDGSSPLHVAALHGRA   99 (269)
T ss_dssp             TTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTTSCCHHHHHHHTTCT
T ss_pred             cCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcH
Confidence            6999999999998875322     123367899999999998876 4889999999998 99999999999999999999


Q ss_pred             HHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCC
Q 043760           76 GIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMT  155 (345)
Q Consensus        76 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t  155 (345)
                      +++++|++.++++ ...+..|.||||+|+..++.+++++|++.+++                        ++.+|..|+|
T Consensus       100 ~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~------------------------~n~~d~~g~T  154 (269)
T 4b93_B          100 DLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAK------------------------PNKKDLSGNT  154 (269)
T ss_dssp             THHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------------------SCCCCTTCCC
T ss_pred             HHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCC------------------------CCCCCCCCCC
Confidence            9999999999999 78999999999999999999999999999998                        8999999999


Q ss_pred             HHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccchhhhc
Q 043760          156 ILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELAVT  231 (345)
Q Consensus       156 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  231 (345)
                      |||+|+..|+.+++++|++. |+++|.+|..|+||||+|+.    .++.+++++|++.||+++.......+++...
T Consensus       155 pL~~A~~~g~~~~v~~Ll~~-gadvn~~~~~g~t~Lh~A~~----~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  225 (269)
T 4b93_B          155 PLIYACSGGHHELVALLLQH-GASINASNNKGNTALHEAVI----EKHVFVVELLLLHGASVQVLNKRQRTAVDCA  225 (269)
T ss_dssp             HHHHHHHTTCGGGHHHHHHT-TCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHTTCCSCCCCTTSCCSGGGS
T ss_pred             HHHHHHHCCCHHHHHHHHHC-CCCCCccccCCCcHHHHHHH----cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            99999999999999999999 99999999999999999999    8899999999999999876444444444433

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.8e-34  Score=245.59  Aligned_cols=181  Identities=23%  Similarity=0.259  Sum_probs=172.0

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++++.|++.+.++...   +..|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|
T Consensus        50 ~g~~~~v~~Ll~~g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~L  125 (231)
T 3aji_A           50 AGHTEIVEFLLQLGVPVNDK---DDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVML  125 (231)
T ss_dssp             HTCHHHHHHHHHTTCCSCCC---CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCcHHHHHHHHHhCCCCCCc---CCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            48899999999999876554   889999999999999999999999999998 88899999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      +++|+++ +..+..|.||||+|+..|+.+++++|++.+++                        ++.+|..|+||||+|+
T Consensus       126 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~  180 (231)
T 3aji_A          126 LEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKAS------------------------TNIQDTEGNTPLHLAC  180 (231)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------------------SCCCCTTSCCHHHHHH
T ss_pred             HHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC------------------------ccccCCCCCCHHHHHH
Confidence            9999999 78999999999999999999999999999988                        8899999999999999


Q ss_pred             HcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccc
Q 043760          162 ADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAI  216 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~  216 (345)
                      ..|+.+++++|+++ |++++.+|..|.||||+|+.    .++.+++++|.+.|++
T Consensus       181 ~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~----~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          181 DEERVEEAKFLVTQ-GASIYIENKEEKTPLQVAKG----GLGLILKRLAEGEEAS  230 (231)
T ss_dssp             HTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHSCH----HHHHHHHHHHHHHHHC
T ss_pred             HCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHh----hHHHHHHHHHcccccc
Confidence            99999999999999 99999999999999999988    7889999999999875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=249.81  Aligned_cols=190  Identities=22%  Similarity=0.203  Sum_probs=126.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  104 (345)
                      +..|+||||+||..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+
T Consensus        56 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~  133 (285)
T 3d9h_A           56 AVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNAC  133 (285)
T ss_dssp             SCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHH
T ss_pred             CccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHH
Confidence            445555555555555555555555555554 555555555555555555555555555555555 455555555555555


Q ss_pred             HcCcHHHHHHHHhcCCCcccccccCCcc-------------HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHH
Q 043760          105 MRGHIDVLEELVRAKPDAASTRLIWVGS-------------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKF  171 (345)
Q Consensus       105 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~  171 (345)
                      ..|+.+++++|++.+++.....  .+.+             ++.|++.+.+   ++.+|..|+||||+|+..|+.+++++
T Consensus       134 ~~~~~~~v~~Ll~~g~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~v~~  208 (285)
T 3d9h_A          134 VSGSWDCVNLLLQHGASVQPES--DLASPIHEAARRGHVECVNSLIAYGGN---IDHKISHLGTPLYLACENQQRACVKK  208 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCSSCSC--TTSCHHHHHHHHTCHHHHHHHHHTTCC---TTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred             HcCHHHHHHHHHHCCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            5555555555555554432211  1221             4444444443   88999999999999999999999999


Q ss_pred             hhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccch
Q 043760          172 LTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNE  227 (345)
Q Consensus       172 Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~  227 (345)
                      |++. |++++. |..|+||||+|+.    .++.+++++|++.|++..........+
T Consensus       209 Ll~~-ga~~~~-~~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~~d~~g~t~  258 (285)
T 3d9h_A          209 LLES-GADVNQ-GKGQDSPLHAVVR----TASEELACLLMDFGADTQAKNAEGKRP  258 (285)
T ss_dssp             HHHT-TCCTTC-CBTTBCHHHHHHH----TTCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred             HHHC-CCCCCC-CCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            9999 889995 8999999999999    888999999999999886544433333

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=9.7e-35  Score=250.39  Aligned_cols=188  Identities=25%  Similarity=0.292  Sum_probs=164.9

Q ss_pred             CCCHHHHHHHHhcCCcc-ccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLI-LERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKA   80 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~-~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~   80 (345)
                      .|+.++++.|++.++.. ......+..|+||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++
T Consensus        18 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~   96 (236)
T 1ikn_D           18 HEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGV   96 (236)
T ss_dssp             TTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             cCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            46777788888876531 012234788999999999999999999999999988 8889999999999999999999999


Q ss_pred             HHhhCCCC-----CcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCC-CCC
Q 043760           81 LLQVIPDK-----CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDD-YGM  154 (345)
Q Consensus        81 Ll~~~~~~-----~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~-~g~  154 (345)
                      |++.+++.     ....+..|.||||+|+..|+.+++++|++.|++                        ++.++. .|+
T Consensus        97 Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------~~~~~~~~g~  152 (236)
T 1ikn_D           97 LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD------------------------VNAQEPCNGR  152 (236)
T ss_dssp             HHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC------------------------TTCCCTTTCC
T ss_pred             HHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------------CCCCCCCCCC
Confidence            99998752     367888999999999999999999999999988                        888887 999


Q ss_pred             CHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          155 TILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       155 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      ||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.    .++.+++++|++.|++...
T Consensus       153 tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~----~~~~~~~~~Ll~~ga~~~~  212 (236)
T 1ikn_D          153 TALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWG----RPSTRIQQQLGQLTLENLQ  212 (236)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCTT----SSCHHHHHHHHTTSCGGGS
T ss_pred             CHHHHHHHcCCHHHHHHHHHc-CCCCCcccCCCCCHHHHHHc----cCchHHHHHHHHcchhhhh
Confidence            999999999999999999999 99999999999999999999    8899999999999998754

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.3e-33  Score=230.78  Aligned_cols=151  Identities=30%  Similarity=0.397  Sum_probs=140.0

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      +|++++|+.|++.|+++...   |..|+||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|
T Consensus        14 ~G~~~~v~~Ll~~Gadvn~~---d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~~v~~L   89 (169)
T 4gpm_A           14 NGNKDRVKDLIENGADVNAS---DSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLL   89 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCc---CCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCHHHHHHH
Confidence            69999999999999986554   899999999999999999999999999998 89999999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      +++|+++ +.+|.+|+||||+|+..|+.+++++|+++|++                        ++.+|..|+||||+|+
T Consensus        90 l~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad------------------------~~~~d~~G~TpL~~A~  144 (169)
T 4gpm_A           90 ISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD------------------------VNTSDSDGRTPLDLAR  144 (169)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHH
T ss_pred             HHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------------ccccCCCCCCHHHHHH
Confidence            9999999 89999999999999999999999999999998                        8999999999999999


Q ss_pred             HcCCHHHHHHhhhcCCccccc
Q 043760          162 ADKQIEAIKFLTTSTAIEVNA  182 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~~~~~~~~  182 (345)
                      +.|+.+++++|+++ |++++-
T Consensus       145 ~~g~~~iv~~Ll~~-GA~ie~  164 (169)
T 4gpm_A          145 EHGNEEVVKLLEKQ-GGWLEH  164 (169)
T ss_dssp             HTTCHHHHHHHHTC-------
T ss_pred             HcCCHHHHHHHHHC-CCCcCC
Confidence            99999999999999 888864

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.4e-33  Score=245.78  Aligned_cols=180  Identities=17%  Similarity=0.179  Sum_probs=169.0

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++|+.|++.+.++...   +..|+||||+|+..|+.+++++|++.++..++.++..|.||||+|+..|+.+++++|
T Consensus        67 ~g~~~~v~~Ll~~g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  143 (253)
T 1yyh_A           67 YSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL  143 (253)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC---CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHH
Confidence            58999999999999886554   889999999999999999999999999844488999999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      +++|+++ +..|..|.||||+|+..|+.+++++|++.|++                        ++.+|..|.||||+|+
T Consensus       144 l~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------------------------~~~~~~~g~tpL~~A~  198 (253)
T 1yyh_A          144 INSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN------------------------KDMQNNREETPLFLAA  198 (253)
T ss_dssp             HHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHH
T ss_pred             HHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------------CCCcCCCCCCHHHHHH
Confidence            9999999 78999999999999999999999999999998                        8899999999999999


Q ss_pred             HcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcc
Q 043760          162 ADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAG  214 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~g  214 (345)
                      ..|+.+++++|+++ |++++.+|..|+||+|+|+.    .++.+|+++|....
T Consensus       199 ~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~----~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          199 REGSYETAKVLLDH-FANRDITDHMDRLPRDIAQE----RMHHDIVRLLDLEH  246 (253)
T ss_dssp             HHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHC--
T ss_pred             HCCCHHHHHHHHHc-CCCccccccCCCCHHHHHHH----cCCHHHHHHHHHHh
Confidence            99999999999999 99999999999999999999    89999999998543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=7.5e-33  Score=238.23  Aligned_cols=204  Identities=24%  Similarity=0.194  Sum_probs=179.3

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|++++++.|++.+.++...   +..|.||||+|+..|+.+++++|++.++++....+..|.||||+|+..|+.+++++|
T Consensus        19 ~g~~~~~~~Ll~~g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~L   95 (240)
T 3eu9_A           19 YGIYERCRELVEAGYDVRQP---DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL   95 (240)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHH
T ss_pred             cCChHHHHHHHHcCCCcCCC---CCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHH
Confidence            68999999999999886544   888999999999999999999999999988666667799999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc--------------HHHHHHhcCCccccc
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS--------------TEVLLENMGDFELLN  147 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~~~~~  147 (345)
                      ++.|+++ +..+..|.||||+|+..|+.+++++|++.+++..... ..+.+              ++.|++.+.+   ++
T Consensus        96 l~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~L~~~~~~---~~  170 (240)
T 3eu9_A           96 MKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD-QNGMTPLMWAAYRTHSVDPTRLLLTFNVS---VN  170 (240)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHCCSSTTHHHHHHTTCC---TT
T ss_pred             HHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccC-CCCCcHHHHHHHhCChHHHHHHHHhcCCC---cc
Confidence            9999999 7889999999999999999999999999988765432 22222              6777777666   77


Q ss_pred             ccCC-CCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccc
Q 043760          148 AKDD-YGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISA  218 (345)
Q Consensus       148 ~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~  218 (345)
                      ..+. .|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.    .++.+++++|++.|+...
T Consensus       171 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~----~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          171 LGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQ----RKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHHC----
T ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHhhhccC
Confidence            7776 899999999999999999999999 89999999999999999999    889999999999998653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-34  Score=253.66  Aligned_cols=177  Identities=24%  Similarity=0.311  Sum_probs=150.8

Q ss_pred             HHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhC
Q 043760            6 NTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVI   85 (345)
Q Consensus         6 ~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~   85 (345)
                      .+++.|++.|.++...   |.+|+||||+||..|+.+++++|++.++++ +.++..|.||||+|+..++.+++++|++.|
T Consensus        67 ~~v~~Ll~~Gadvn~~---d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  142 (269)
T 4b93_B           67 KRLAKVPASGLGVNVT---SQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSN  142 (269)
T ss_dssp             --------CCCCTTCC---CTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCCCCc---CCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCC
Confidence            4678899999886544   889999999999999999999999999998 888999999999999999999999999999


Q ss_pred             CCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCC
Q 043760           86 PDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQ  165 (345)
Q Consensus        86 ~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~  165 (345)
                      +++ +..|..|+||||+|+..|+.+++++|++.|++                        +|.+|..|+||||+|+..|+
T Consensus       143 ~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad------------------------vn~~~~~g~t~Lh~A~~~g~  197 (269)
T 4b93_B          143 AKP-NKKDLSGNTPLIYACSGGHHELVALLLQHGAS------------------------INASNNKGNTALHEAVIEKH  197 (269)
T ss_dssp             CCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC------------------------TTCBCTTSCBHHHHHHHTTC
T ss_pred             CCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC------------------------CCccccCCCcHHHHHHHcCC
Confidence            999 88999999999999999999999999999998                        89999999999999999999


Q ss_pred             HHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCch-hhHHHHHHHcccc
Q 043760          166 IEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKD-WDTGELLRRAGAI  216 (345)
Q Consensus       166 ~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~-~~i~~~L~~~ga~  216 (345)
                      .+++++|++. |+|++.+|..|+||||+|++    .++ .++.++|...++.
T Consensus       198 ~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~----~~~i~~lL~~l~~~~~~  244 (269)
T 4b93_B          198 VFVVELLLLH-GASVQVLNKRQRTAVDCAEQ----NSKIMELLQVVPSCVAS  244 (269)
T ss_dssp             HHHHHHHHHT-TCCSCCCCTTSCCSGGGSCT----TCHHHHHTTC-------
T ss_pred             HHHHHHHHHC-CCCCCCcCCCCCCHHHHHHh----CCcHHHHHHHHHHhchh
Confidence            9999999999 99999999999999999987    443 3444444444543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=9.9e-34  Score=252.46  Aligned_cols=217  Identities=19%  Similarity=0.170  Sum_probs=172.8

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|++++|+.|++.+.++...   |..|.||||+||..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|
T Consensus        50 ~g~~~~v~~Ll~~g~~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~L  125 (299)
T 1s70_B           50 SGDTEEVLRLLERGADINYA---NVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYL  125 (299)
T ss_dssp             HTCHHHHHHHHHHCCCTTCB---CTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCccc---CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHH
Confidence            48899999999998875543   788999999999999999999999999887 88889999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc-----HHHHHHhcCCcccccccCCCCCCH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS-----TEVLLENMGDFELLNAKDDYGMTI  156 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~d~~g~t~  156 (345)
                      +++|+++ +..+..|.||||+|+..++.+++++++................     +..++.....  .....+..|.||
T Consensus       126 l~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~g~t~  202 (299)
T 1s70_B          126 ISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI--NDVRHAKSGGTA  202 (299)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC--CCCCCTTTCCCH
T ss_pred             HhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc--chhhhcCCCCCH
Confidence            9999988 7888899999999999999999988876533221111111100     2222222221  134567889999


Q ss_pred             HHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccchhhh
Q 043760          157 LLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELAV  230 (345)
Q Consensus       157 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~  230 (345)
                      ||+|+..|+.+++++|++. |++++.+|..|+||||+|+.    .++.+++++|++.|+++.........++..
T Consensus       203 L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~  271 (299)
T 1s70_B          203 LHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAH----WGKEEACRILVENLCDMEAVNKVGQTAFDV  271 (299)
T ss_dssp             HHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTCCCTTSCCTTTS
T ss_pred             HHHHHHCCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHh----cCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            9999999999999999998 89999999999999999999    889999999999999886644444444333

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=5.3e-34  Score=248.82  Aligned_cols=188  Identities=24%  Similarity=0.194  Sum_probs=165.1

Q ss_pred             CCCHH----HHHHHHhcCCccccC-CCCCCCCCcHHHHHHHc---CCHHHHHHHhcCCCCccc----------ccCCCCc
Q 043760            2 AGSVN----TLLELRQQDPLILER-PTVNCLSETPLHVAALL---GHEDFAKEILPQKPRIAE----------ELDSRKS   63 (345)
Q Consensus         2 ~g~~~----~v~~ll~~~~~~~~~-~~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~----------~~d~~g~   63 (345)
                      .|+.+    +++.|++.+.++... ...|..|+||||+|+..   |+.+++++|++.+++...          ..|..|.
T Consensus        12 ~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~   91 (256)
T 2etb_A           12 RGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGH   91 (256)
T ss_dssp             HTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTC
T ss_pred             cCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCC
Confidence            46776    556666788776540 01388999999999999   999999999998776511          2347899


Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCC-------------CCcHHHHHHHcCcHHHHHHHHh---cCCCcccccc
Q 043760           64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVD-------------GRNPLHLAAMRGHIDVLEELVR---AKPDAASTRL  127 (345)
Q Consensus        64 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~-------------g~tpLh~A~~~g~~~iv~~Ll~---~~~~~~~~~~  127 (345)
                      ||||+|+..|+.+++++|+++|+++ +..+..             |.||||+|+..|+.+++++|++   .|++      
T Consensus        92 t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~------  164 (256)
T 2etb_A           92 SALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS------  164 (256)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC------
Confidence            9999999999999999999999999 677765             9999999999999999999999   8888      


Q ss_pred             cCCccHHHHHHhcCCcccccccCCCCCCHHHHHHH--cCCHH-------HHHHhhhcCCccc-------cccCCCCCcHH
Q 043760          128 IWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVA--DKQIE-------AIKFLTTSTAIEV-------NAVTANGFTAW  191 (345)
Q Consensus       128 ~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~--~g~~~-------~v~~Ll~~~~~~~-------~~~n~~g~T~L  191 (345)
                                        ++.+|..|+||||+|+.  .++.+       ++++|++. |+++       +.+|..|+|||
T Consensus       165 ------------------~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL  225 (256)
T 2etb_A          165 ------------------LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQGLTPL  225 (256)
T ss_dssp             ------------------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCTTSCCHH
T ss_pred             ------------------cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCCCCCCHH
Confidence                              89999999999999999  88888       99999999 8999       99999999999


Q ss_pred             HHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          192 DILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       192 ~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      |+|+.    .++.+++++|+++|++...
T Consensus       226 ~~A~~----~g~~~~v~~Ll~~g~~~~~  249 (256)
T 2etb_A          226 KLAAK----EGKIEIFRHILQREFSGAA  249 (256)
T ss_dssp             HHHHH----TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHH----hCCHHHHHHHHhCCCCCCC
Confidence            99999    8899999999999997754

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2.7e-33  Score=233.73  Aligned_cols=160  Identities=23%  Similarity=0.282  Sum_probs=154.1

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHH
Q 043760           24 VNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLA  103 (345)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  103 (345)
                      +|..|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWS  108 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            4888999999999999999999999999987 888999999999999999999999999999998 78999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCcccccc
Q 043760          104 AMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAV  183 (345)
Q Consensus       104 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  183 (345)
                      +..|+.+++++|++.+++                        ++.+|..|.||||+|+..|+.+++++|++. |++++.+
T Consensus       109 ~~~~~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~  163 (192)
T 2rfm_A          109 IIFGYSEMSYFLLEHGAN------------------------VNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISAR  163 (192)
T ss_dssp             HHHTCHHHHHHHHHTTCC------------------------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCB
T ss_pred             HHcCCHHHHHHHHHCCCC------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCc
Confidence            999999999999999998                        899999999999999999999999999999 9999999


Q ss_pred             CCCCCcHHHHHHhcCCCCchhhHHHHHHHcc
Q 043760          184 TANGFTAWDILAQSKRDIKDWDTGELLRRAG  214 (345)
Q Consensus       184 n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~g  214 (345)
                      |..|.||||+|+.    .++.+++++|++.|
T Consensus       164 ~~~g~t~l~~A~~----~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          164 DLTGLTAEASARI----FGRQEVIKIFTEVR  190 (192)
T ss_dssp             CTTSCBHHHHHHH----TTCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHH----hCcHHHHHHHHhcc
Confidence            9999999999999    88999999999875

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.7e-33  Score=255.95  Aligned_cols=204  Identities=15%  Similarity=0.093  Sum_probs=174.1

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|++++|+.|++.+.++...   |..|.||||+||..|+.+++++|++.+++.   .+..|.||||+|+..|+.+++++|
T Consensus        30 ~g~~~~v~~Ll~~g~~~~~~---d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A~~~g~~~~v~~L  103 (364)
T 3ljn_A           30 KGQTDEVRRLIETGVSPTIQ---NRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMANKTDLVVAL  103 (364)
T ss_dssp             HTCHHHHHHHHHTTCCTTCC---CTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCcccc---CCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHHHHcCCHHHHHHH
Confidence            48999999999999886544   889999999999999999999999999855   235789999999999999999999


Q ss_pred             Hhh----CCCCCcC-----------------CCCCCCcHHHHHHHcC--cHHHHHHHHhcCCCcccccccCCcc------
Q 043760           82 LQV----IPDKCSD-----------------TDVDGRNPLHLAAMRG--HIDVLEELVRAKPDAASTRLIWVGS------  132 (345)
Q Consensus        82 l~~----~~~~~~~-----------------~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~~~------  132 (345)
                      ++.    +.++ +.                 .|..|.||||+|+..|  +.+++++|++.|++.... +..+.+      
T Consensus       104 l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~-d~~g~t~L~~A~  181 (364)
T 3ljn_A          104 VEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK-DKADETPLMRAM  181 (364)
T ss_dssp             HHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC-CTTSCCHHHHHH
T ss_pred             HHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc-CCCCCCHHHHHH
Confidence            988    6665 34                 6778999999999999  899999999998876443 333433      


Q ss_pred             -------HHHHHHhcCC--cccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCch
Q 043760          133 -------TEVLLENMGD--FELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKD  203 (345)
Q Consensus       133 -------~~~l~~~~~~--~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~  203 (345)
                             +++|++.+.+  ...++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+.    .++
T Consensus       182 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~----~g~  256 (364)
T 3ljn_A          182 EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM-GIDVNMEDNEHTVPLYLSVR----AAM  256 (364)
T ss_dssp             HTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHH----TCC
T ss_pred             HcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHH----hCh
Confidence                   6777776544  223788899999999999999999999999998 99999999999999999999    889


Q ss_pred             hhHHHHHHHcccccc
Q 043760          204 WDTGELLRRAGAISA  218 (345)
Q Consensus       204 ~~i~~~L~~~ga~~~  218 (345)
                      .+++++|++.|++..
T Consensus       257 ~~~v~~Ll~~~~~~~  271 (364)
T 3ljn_A          257 VLLTKELLQKTDVFL  271 (364)
T ss_dssp             HHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHcCCchh
Confidence            999999999999763

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2e-32  Score=257.14  Aligned_cols=203  Identities=28%  Similarity=0.296  Sum_probs=130.7

Q ss_pred             CCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHH
Q 043760            3 GSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALL   82 (345)
Q Consensus         3 g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll   82 (345)
                      |+.++++.|++.+.++...   +..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+|+..|+.+++++|+
T Consensus       157 g~~~~v~~Ll~~g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll  232 (437)
T 1n11_A          157 GKVRVAELLLERDAHPNAA---GKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLL  232 (437)
T ss_dssp             TCHHHHHHHHHTTCCTTCC---CSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHhCCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            5556666666655553322   555666666666666666666666666555 555566666666666666666666666


Q ss_pred             hhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc-------------HHHHHHhcCCccccccc
Q 043760           83 QVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS-------------TEVLLENMGDFELLNAK  149 (345)
Q Consensus        83 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~~  149 (345)
                      +.|+++ +..+..|.||||+|+..|+.+++++|++.+++.... +..+.+             ++.|++.+.+   ++.+
T Consensus       233 ~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~  307 (437)
T 1n11_A          233 QYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDAT  307 (437)
T ss_dssp             HTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCC
T ss_pred             HcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCcc---CCCC
Confidence            666665 556666666666666666666666666666554322 222222             5556665554   6677


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          150 DDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       150 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      |..|+||||+|+..|+.+++++|+++ |+++|.+|..|+||||+|+.    .++.+++++|++.|+++..
T Consensus       308 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          308 TRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQ----QGHTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             CSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSCC
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHH----CChHHHHHHHHHCcCCCCC
Confidence            77777777777777777777777777 77777777777777777777    6677777777777776654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=5.5e-33  Score=227.63  Aligned_cols=162  Identities=22%  Similarity=0.243  Sum_probs=154.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcC
Q 043760           28 SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG  107 (345)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  107 (345)
                      +.||||.|+..|+.+++++|++.++..++.+|..|+||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence            5789999999999999999999999866999999999999999999999999999999999 789999999999999999


Q ss_pred             cHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCC
Q 043760          108 HIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANG  187 (345)
Q Consensus       108 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g  187 (345)
                      +.+++++|++.+++                        ++.+|..|+||||+|+..|+.+++++|++. |++++.+|..|
T Consensus        81 ~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g  135 (172)
T 3v30_A           81 YTDIVGLLLERDVD------------------------INIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSG  135 (172)
T ss_dssp             CHHHHHHHHTTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS
T ss_pred             CHHHHHHHHHcCCC------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCC
Confidence            99999999999988                        899999999999999999999999999999 89999999999


Q ss_pred             CcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          188 FTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       188 ~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      +||||+|+.    .++.+++++|++.|++...
T Consensus       136 ~t~l~~A~~----~~~~~~~~~L~~~~~~~~~  163 (172)
T 3v30_A          136 YTPMDLAVA----LGYRKVQQVIENHILKLFQ  163 (172)
T ss_dssp             CCHHHHHHH----HTCHHHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHH----hCcHHHHHHHHHHHHHHhc
Confidence            999999999    7889999999999998754

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=6e-33  Score=226.30  Aligned_cols=162  Identities=22%  Similarity=0.248  Sum_probs=155.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHc
Q 043760           27 LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR  106 (345)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  106 (345)
                      .|.||||.|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence            5899999999999999999999999887 889999999999999999999999999999999 78899999999999999


Q ss_pred             CcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCC
Q 043760          107 GHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTAN  186 (345)
Q Consensus       107 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~  186 (345)
                      |+.+++++|++.+++                        ++.+|..|.||||+|+..|+.+++++|++. |++++.+|..
T Consensus        80 ~~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~  134 (167)
T 3v31_A           80 GYTDIVKMLLDCGVD------------------------VNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETDS  134 (167)
T ss_dssp             TCHHHHHHHHHHTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT
T ss_pred             CCHHHHHHHHHCCCC------------------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCC
Confidence            999999999999988                        889999999999999999999999999998 9999999999


Q ss_pred             CCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          187 GFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       187 g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      |+||||+|+.    .++.+++++|++++++...
T Consensus       135 g~t~l~~A~~----~~~~~~~~~L~~~~~~~~~  163 (167)
T 3v31_A          135 GYNSMDLAVA----LGYRSVQQVIESHLLKLLQ  163 (167)
T ss_dssp             SCCHHHHHHH----HTCHHHHHHHHHHHHHHCS
T ss_pred             CCCHHHHHHH----cCcHHHHHHHHHHHHHHHH
Confidence            9999999999    8899999999999987644

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=6.9e-33  Score=224.60  Aligned_cols=158  Identities=23%  Similarity=0.263  Sum_probs=149.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHc
Q 043760           27 LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR  106 (345)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  106 (345)
                      ...||||.|+..|+.+++++|++.+.++ +.+|..|+||||+|+. |+.+++++|+++|+++ +..|..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            4679999999999999999999999998 8899999999999999 9999999999999999 78999999999999999


Q ss_pred             CcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCcc-ccccCC
Q 043760          107 GHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIE-VNAVTA  185 (345)
Q Consensus       107 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~~~~n~  185 (345)
                      |+.+++++|++.+++                        ++.+|..|+||||+|+..|+.+++++|++. |++ ++.+|.
T Consensus        81 ~~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~  135 (162)
T 1ihb_A           81 GFLDTLQTLLEFQAD------------------------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKH-TASNVGHRNH  135 (162)
T ss_dssp             TCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SCCCTTCCCT
T ss_pred             CCHHHHHHHHHcCCC------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-cCCCCCCcCC
Confidence            999999999999988                        899999999999999999999999999999 666 799999


Q ss_pred             CCCcHHHHHHhcCCCCchhhHHHHHHHcccc
Q 043760          186 NGFTAWDILAQSKRDIKDWDTGELLRRAGAI  216 (345)
Q Consensus       186 ~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~  216 (345)
                      .|.||||+|+.    .++.+++++|+++||+
T Consensus       136 ~g~t~l~~A~~----~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          136 KGDTACDLARL----YGRNEVVSLMQANGAG  162 (162)
T ss_dssp             TSCCHHHHHHH----TTCHHHHHHHHHTC--
T ss_pred             CCCcHHHHHHH----cCCHHHHHHHHHhCCC
Confidence            99999999999    8899999999999985

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.7e-33  Score=240.75  Aligned_cols=180  Identities=17%  Similarity=0.135  Sum_probs=163.9

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCC----CcccccCCCCchHHHHHHHcCCHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKP----RIAEELDSRKSSALHIASQKGYVGI   77 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~----~~~~~~d~~g~tpLh~A~~~g~~~i   77 (345)
                      .|+.++++.|++.+.++...   +..|.||||+|+..|+.+++++|++.++    ++ +..|..|.||||+|+..|+.++
T Consensus        56 ~~~~~~v~~Ll~~g~~~~~~---~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~  131 (241)
T 1k1a_A           56 TTLPSVVRLLVTAGASPMAL---DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQET  131 (241)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHH
T ss_pred             cCCHHHHHHHHHcCCCcccc---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHH
Confidence            58999999999999886554   8899999999999999999999999987    55 7889999999999999999999


Q ss_pred             HHHHHhhCCCCCcCCC-CCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCH
Q 043760           78 VKALLQVIPDKCSDTD-VDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTI  156 (345)
Q Consensus        78 v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~  156 (345)
                      +++|+++|+++ +..+ ..|.||||+|+..|+.+++++|++.|++                        ++.+|..|+||
T Consensus       132 ~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~  186 (241)
T 1k1a_A          132 VQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN------------------------VNAQMYSGSSA  186 (241)
T ss_dssp             HHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCBCTTSCBH
T ss_pred             HHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC------------------------CCCcCCCCCCH
Confidence            99999999999 5666 8899999999999999999999999998                        89999999999


Q ss_pred             HHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccc
Q 043760          157 LLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGA  215 (345)
Q Consensus       157 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga  215 (345)
                      ||+|+..|+.+++++|++. |++++.+|..|+||||+|+.    .++.++++.|.+.++
T Consensus       187 L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~----~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          187 LHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARS----RRVIDILRGKATRPA  240 (241)
T ss_dssp             HHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCTTTTCSS----HHHHHHHTC------
T ss_pred             HHHHHHcCCHHHHHHHHhc-CCCCCCcCCCCCCHHHHHHh----cCcHHHHhhhccCCC
Confidence            9999999999999999998 99999999999999999999    889999999988765

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=1.2e-32  Score=225.05  Aligned_cols=159  Identities=30%  Similarity=0.385  Sum_probs=151.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  104 (345)
                      ...+.++||.||..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAA   88 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHH
Confidence            667899999999999999999999999998 889999999999999999999999999999998 789999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccC
Q 043760          105 MRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVT  184 (345)
Q Consensus       105 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n  184 (345)
                      ..|+.+++++|++.+++                        ++.+|..|.||||+|+..|+.+++++|+++ |++++.+|
T Consensus        89 ~~~~~~~~~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~  143 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGAD------------------------VNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQD  143 (169)
T ss_dssp             HTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCC
T ss_pred             HcCCHHHHHHHHHcCCC------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcC
Confidence            99999999999999988                        889999999999999999999999999999 99999999


Q ss_pred             CCCCcHHHHHHhcCCCCchhhHHHHHHHcc
Q 043760          185 ANGFTAWDILAQSKRDIKDWDTGELLRRAG  214 (345)
Q Consensus       185 ~~g~T~L~~a~~~~~~~~~~~i~~~L~~~g  214 (345)
                      ..|.||||+|+.    .++.+++++|++.|
T Consensus       144 ~~g~t~l~~A~~----~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          144 KFGKTAFDISID----NGNEDLAEILQKLN  169 (169)
T ss_dssp             TTSCCHHHHHHH----TTCHHHHHHHHTC-
T ss_pred             CCCCCHHHHHHH----hCCHHHHHHHHHcC
Confidence            999999999999    88999999999876

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=7.9e-33  Score=254.78  Aligned_cols=194  Identities=19%  Similarity=0.244  Sum_probs=149.0

Q ss_pred             HHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhC---C
Q 043760           10 ELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVI---P   86 (345)
Q Consensus        10 ~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~---~   86 (345)
                      .|++.+.++...   |..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++++   .
T Consensus       151 ~ll~~ga~vn~~---d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~  226 (373)
T 2fo1_E          151 ECIAAGADVNAM---DCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG  226 (373)
T ss_dssp             HHHHTCCCTTCC---CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHH
T ss_pred             HHHhcCCCCcCC---CCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCcccc
Confidence            344788776544   889999999999999999999999999998 889999999999999999999999999987   6


Q ss_pred             CCCcCCCCCCCcHHHHHHHcC---cHHHHHHHHhcCCCcccc-------cccCCcc-------------HHHHHHhc-CC
Q 043760           87 DKCSDTDVDGRNPLHLAAMRG---HIDVLEELVRAKPDAAST-------RLIWVGS-------------TEVLLENM-GD  142 (345)
Q Consensus        87 ~~~~~~d~~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~~~~-------~~~~~~~-------------~~~l~~~~-~~  142 (345)
                      ++ +..|..|.||||+|+..+   +.+++++|++.+++....       .+..+.+             +++|++.. .+
T Consensus       227 ~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  305 (373)
T 2fo1_E          227 DI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN  305 (373)
T ss_dssp             TT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC
T ss_pred             Ch-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC
Confidence            77 788999999999999998   899999999999886432       1112222             55555543 33


Q ss_pred             cccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccc
Q 043760          143 FELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAI  216 (345)
Q Consensus       143 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~  216 (345)
                         ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+.    .++.+++++|++.|++
T Consensus       306 ---~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~l~~A~~----~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          306 ---KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQA----NNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             ---TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHH----TTCHHHHHHHHTTC--
T ss_pred             ---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccCCCCCCCCHHHHHHH----cCCHHHHHHHHhcCcc
Confidence               666666666666666666666666666666 66666666666666666666    5666666666666654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=1.7e-33  Score=246.10  Aligned_cols=188  Identities=21%  Similarity=0.206  Sum_probs=163.3

Q ss_pred             CCCHHHHHHHHh----cCCccccCC-CCCCCCCcHHHHHH---HcCCHHHHHHHhcCCCCc----------ccccCCCCc
Q 043760            2 AGSVNTLLELRQ----QDPLILERP-TVNCLSETPLHVAA---LLGHEDFAKEILPQKPRI----------AEELDSRKS   63 (345)
Q Consensus         2 ~g~~~~v~~ll~----~~~~~~~~~-~~~~~g~t~Lh~Aa---~~g~~~~v~~Ll~~~~~~----------~~~~d~~g~   63 (345)
                      .|+.+.|+.|++    .+.++.... ..+..|+||||+|+   ..|+.+++++|++.+++.          ....|..|+
T Consensus        15 ~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~   94 (260)
T 3jxi_A           15 RGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQ   94 (260)
T ss_dssp             HTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESB
T ss_pred             hCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCC
Confidence            478886555555    777665432 12477999999999   679999999999986432          144556899


Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCCCcCCC--------------CCCCcHHHHHHHcCcHHHHHHHHh---cCCCccccc
Q 043760           64 SALHIASQKGYVGIVKALLQVIPDKCSDTD--------------VDGRNPLHLAAMRGHIDVLEELVR---AKPDAASTR  126 (345)
Q Consensus        64 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~iv~~Ll~---~~~~~~~~~  126 (345)
                      ||||+|+..|+.+++++|+++|+++ +..+              ..|.||||+|+..|+.+++++|++   .|++     
T Consensus        95 t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-----  168 (260)
T 3jxi_A           95 TALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD-----  168 (260)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-----
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-----
Confidence            9999999999999999999999999 6777              689999999999999999999999   8888     


Q ss_pred             ccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCC---------HHHHHHhhhcCCccc-------cccCCCCCcH
Q 043760          127 LIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQ---------IEAIKFLTTSTAIEV-------NAVTANGFTA  190 (345)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~~~~~-------~~~n~~g~T~  190 (345)
                                         ++.+|..|+||||+|+..++         .+++++|++. |+++       +.+|..|+||
T Consensus       169 -------------------~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g~tp  228 (260)
T 3jxi_A          169 -------------------LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDGLSP  228 (260)
T ss_dssp             -------------------TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCH
T ss_pred             -------------------CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCCCCH
Confidence                               89999999999999999888         7999999999 8898       7899999999


Q ss_pred             HHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          191 WDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       191 L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      ||+|+.    .++.+++++|+++|++...
T Consensus       229 L~~A~~----~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          229 LMMAAK----TGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             HHHHHH----TTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHH----cCCHHHHHHHHHhCCCccc
Confidence            999999    8999999999999997754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.1e-33  Score=247.45  Aligned_cols=185  Identities=18%  Similarity=0.188  Sum_probs=161.5

Q ss_pred             CCCHHHHHHHHh----cCCccccCC-CCCCCCCcHHHHHHHc---CCHHHHHHHhcCCCCc------cc----ccCCCCc
Q 043760            2 AGSVNTLLELRQ----QDPLILERP-TVNCLSETPLHVAALL---GHEDFAKEILPQKPRI------AE----ELDSRKS   63 (345)
Q Consensus         2 ~g~~~~v~~ll~----~~~~~~~~~-~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~------~~----~~d~~g~   63 (345)
                      .|++++|+.|++    .+..+.... ..+..|+||||+|+..   |+.+++++|++.+++.      ++    ..|..|.
T Consensus        23 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~  102 (273)
T 2pnn_A           23 QSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQ  102 (273)
T ss_dssp             TTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTC
T ss_pred             cCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCC
Confidence            588888888887    344332110 2378899999999987   9999999999987542      12    2567999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCCCcCCCC--------------CCCcHHHHHHHcCcHHHHHHHHh---cCCCccccc
Q 043760           64 SALHIASQKGYVGIVKALLQVIPDKCSDTDV--------------DGRNPLHLAAMRGHIDVLEELVR---AKPDAASTR  126 (345)
Q Consensus        64 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~--------------~g~tpLh~A~~~g~~~iv~~Ll~---~~~~~~~~~  126 (345)
                      ||||+|+..|+.+++++|+++|+++ +..+.              .|.||||+|+..|+.+++++|++   .|++     
T Consensus       103 tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-----  176 (273)
T 2pnn_A          103 TALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-----  176 (273)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-----
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-----
Confidence            9999999999999999999999999 67776              79999999999999999999999   8888     


Q ss_pred             ccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCC---------HHHHHHhhhcCCcccc-------ccCCCCCcH
Q 043760          127 LIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQ---------IEAIKFLTTSTAIEVN-------AVTANGFTA  190 (345)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~~~~~~-------~~n~~g~T~  190 (345)
                                         ++.+|..|+||||+|+..|+         .+++++|++. |++++       .+|..|+||
T Consensus       177 -------------------~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~~g~Tp  236 (273)
T 2pnn_A          177 -------------------ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKGLTP  236 (273)
T ss_dssp             -------------------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCH
T ss_pred             -------------------ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh-hhhcccccccccccCCCCCCH
Confidence                               89999999999999999998         8999999999 88997       599999999


Q ss_pred             HHHHHhcCCCCchhhHHHHHHHcccc
Q 043760          191 WDILAQSKRDIKDWDTGELLRRAGAI  216 (345)
Q Consensus       191 L~~a~~~~~~~~~~~i~~~L~~~ga~  216 (345)
                      ||+|+.    .++.+++++|++.||+
T Consensus       237 L~~A~~----~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          237 LALAAS----SGKIGVLAYILQREIH  258 (273)
T ss_dssp             HHHHHH----TTCHHHHHHHHHHHTC
T ss_pred             HHHHHH----hChHHHHHHHHHCCCC
Confidence            999999    8899999999999993

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.2e-33  Score=249.07  Aligned_cols=199  Identities=14%  Similarity=0.051  Sum_probs=165.5

Q ss_pred             CCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHH
Q 043760            3 GSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALL   82 (345)
Q Consensus         3 g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll   82 (345)
                      .+.+.+..+|..+ ++   ...|..|+||||+|+..|+.+++++|++.++++ +..  +|+||||+|+..|+.+++++|+
T Consensus        10 ~~~~~v~~lL~~~-~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~Ll   82 (285)
T 3kea_A           10 WKSKQLKSFLSSK-DT---FKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILL   82 (285)
T ss_dssp             CCHHHHHHHHHST-TT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHHH
T ss_pred             cCHHHHHHHHHhC-CC---CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHHH
Confidence            4556666666655 22   234888999999999999999999999999887 555  4899999999999999999999


Q ss_pred             hhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc-------------HHHHHHhcCCccccccc
Q 043760           83 QVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS-------------TEVLLENMGDFELLNAK  149 (345)
Q Consensus        83 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~~  149 (345)
                      ++|+++ +..|..|.||||+|+..|+.+++++|++.|++........+.+             +++|++.+..   .  .
T Consensus        83 ~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~---~--~  156 (285)
T 3kea_A           83 FSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS---T--F  156 (285)
T ss_dssp             HTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT---T--C
T ss_pred             HCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc---c--c
Confidence            999998 7889999999999999999999999999988865433222123             6666666543   2  3


Q ss_pred             CC-CCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcH-HHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          150 DD-YGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA-WDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       150 d~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~-L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      +. .|.||||+|+..|+.+++++|+++ |++++.+|..|+|| ||+|+.    .++.+++++|++.|+++..
T Consensus       157 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~~L~~A~~----~~~~~~v~~Ll~~gad~~~  223 (285)
T 3kea_A          157 DLAILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAID----NKDIEMLQALFKYDINIYS  223 (285)
T ss_dssp             CCSTHHHHHHHHHHTTCHHHHHHHHHH-HHHTCTTCCCBCCTTHHHHHH----HTCHHHHHHHTTSCBCSTT
T ss_pred             cccCCccHHHHHHHcChHHHHHHHHHc-CCCCCcccCCCCChHHHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence            33 899999999999999999999999 99999999999997 999999    7889999999999998865

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.2e-32  Score=240.79  Aligned_cols=153  Identities=14%  Similarity=0.094  Sum_probs=134.3

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc---
Q 043760           56 EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS---  132 (345)
Q Consensus        56 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~---  132 (345)
                      +.+|..|+||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.+++.... +..+.+   
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~  130 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLF  130 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCC-CTTCCCHHH
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHH
Confidence            668999999999999999999999999999998 789999999999999999999999999998876533 333333   


Q ss_pred             ----------HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCc
Q 043760          133 ----------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIK  202 (345)
Q Consensus       133 ----------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~  202 (345)
                                ++.|++.+.+   ++. +..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.    .+
T Consensus       131 ~A~~~~~~~~v~~Ll~~g~~---~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~----~~  201 (285)
T 3d9h_A          131 NACVSGSWDCVNLLLQHGAS---VQP-ESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACE----NQ  201 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC---SSC-SCTTSCHHHHHHHHTCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHH----TT
T ss_pred             HHHHcCHHHHHHHHHHCCCC---CCC-CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHH----cC
Confidence                      7777777655   443 44599999999999999999999998 88999999999999999999    88


Q ss_pred             hhhHHHHHHHccccccc
Q 043760          203 DWDTGELLRRAGAISAK  219 (345)
Q Consensus       203 ~~~i~~~L~~~ga~~~~  219 (345)
                      +.+++++|++.|++...
T Consensus       202 ~~~~v~~Ll~~ga~~~~  218 (285)
T 3d9h_A          202 QRACVKKLLESGADVNQ  218 (285)
T ss_dssp             CHHHHHHHHHTTCCTTC
T ss_pred             cHHHHHHHHHCCCCCCC
Confidence            89999999999998764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=7.7e-32  Score=232.07  Aligned_cols=177  Identities=21%  Similarity=0.204  Sum_probs=162.7

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++++.|++.+.++...   +..|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|
T Consensus        54 ~~~~~~v~~Ll~~g~~~~~~---~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  130 (237)
T 3b7b_A           54 NNHLEAVKYLIKAGALVDPK---DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL  130 (237)
T ss_dssp             TTCHHHHHHHHTTTCCCCCC---CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hCCHHHHHHHHhCCCCCCCC---CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            58999999999999876544   889999999999999999999999999544488999999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      +++|+++ +..+..|.||||+|+..|+.+++++|++.+++                        ++.+|..|.||||+|+
T Consensus       131 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~  185 (237)
T 3b7b_A          131 LSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCD------------------------LHAVNIHGDSPLHIAA  185 (237)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC------------------------TTCCCTTCCCHHHHHH
T ss_pred             HHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC------------------------CCCcCCCCCCHHHHHH
Confidence            9999999 78999999999999999999999999999998                        8899999999999999


Q ss_pred             HcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHH
Q 043760          162 ADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLR  211 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~  211 (345)
                      ..|+.+++++|+++ |++++.+|..|+||||+|+.    .++.+.+..|+
T Consensus       186 ~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~----~~~~~~~~~l~  230 (237)
T 3b7b_A          186 RENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASL----NSQVWSALQMS  230 (237)
T ss_dssp             HTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHSCT----TCHHHHHHHHH
T ss_pred             HhCCHhHHHHHHHc-CCCCCccCCCCCCHHHHHHH----HHHHHHHHHHH
Confidence            99999999999999 99999999999999999999    66665444433

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.7e-32  Score=232.56  Aligned_cols=175  Identities=21%  Similarity=0.235  Sum_probs=160.0

Q ss_pred             CCCHHHHHHHHhcC--CccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCC--CCcccccCCCCchHHHHHHHcCCHHH
Q 043760            2 AGSVNTLLELRQQD--PLILERPTVNCLSETPLHVAALLGHEDFAKEILPQK--PRIAEELDSRKSSALHIASQKGYVGI   77 (345)
Q Consensus         2 ~g~~~~v~~ll~~~--~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~A~~~g~~~i   77 (345)
                      .|+.++++.|++.+  +++..  ..+..|.||||+|+..|+.+++++|++.+  +++ +.+|..|.||||+|+..|+.++
T Consensus        46 ~~~~~~v~~Ll~~~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~  122 (228)
T 2dzn_A           46 FQAHEITSFLLSKMENVNLDD--YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEV  122 (228)
T ss_dssp             TTCHHHHHHHHHTCTTCCGGG--CCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHhccccccccc--cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhH
Confidence            58999999999999  44433  14889999999999999999999999998  776 8889999999999999999999


Q ss_pred             HHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcC-CCcccccccCCccHHHHHHhcCCcccccccCCCCCCH
Q 043760           78 VKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAK-PDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTI  156 (345)
Q Consensus        78 v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~  156 (345)
                      +++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+ .+                        ++.+|..|+||
T Consensus       123 ~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------------~~~~d~~g~t~  177 (228)
T 2dzn_A          123 SQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA------------------------VNWQDKQGWTP  177 (228)
T ss_dssp             HHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC------------------------SCCCCTTSCCH
T ss_pred             HHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc------------------------ccCcCCCCCCH
Confidence            99999999999 889999999999999999999999999998 66                        88999999999


Q ss_pred             HHHHHHcCCHHHHHHhh-hcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHH
Q 043760          157 LLLAVADKQIEAIKFLT-TSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRR  212 (345)
Q Consensus       157 Lh~A~~~g~~~~v~~Ll-~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~  212 (345)
                      ||+|+..|+.+++++|+ +. |++++.+|..|+||||+|..    .   ++.++|++
T Consensus       178 L~~A~~~~~~~~v~~Ll~~~-ga~~~~~~~~g~t~l~~A~~----~---~~~~~l~~  226 (228)
T 2dzn_A          178 LFHALAEGHGDAAVLLVEKY-GAEYDLVDNKGAKAEDVALN----E---QVKKFFLN  226 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH-CCCSCCBCTTSCBGGGGCSS----T---THHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHhc-CCCCCccCCCCCcHHHHHHH----H---HHHHHHHh
Confidence            99999999999999999 66 99999999999999999977    2   56677764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-31  Score=251.26  Aligned_cols=205  Identities=27%  Similarity=0.356  Sum_probs=172.8

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|++++|+.|++++.++...   +..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|
T Consensus        24 ~g~~~~v~~Ll~~g~~~~~~---~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~L   99 (437)
T 1n11_A           24 MGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLL   99 (437)
T ss_dssp             HTCHHHHHHHHHTTCCSCCS---SSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence            48999999999998875543   788999999999999999999999999988 88899999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc-------------HHHHHHhcCCcccccc
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS-------------TEVLLENMGDFELLNA  148 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~  148 (345)
                      +++|+++ +..+..|.||||+|+..|+.+++++|++.+.+.... +..+.+             +++|++.+.+   ++.
T Consensus       100 l~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~  174 (437)
T 1n11_A          100 LENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLERDAH---PNA  174 (437)
T ss_dssp             HHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTC
T ss_pred             HhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCC
Confidence            9999998 788999999999999999999999999988765432 222322             6777776665   777


Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccc
Q 043760          149 KDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKD  220 (345)
Q Consensus       149 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  220 (345)
                      .+..|.||||+|+..|+.+++++|++. +++++..+..|.||||+|+.    .++.+++++|++.|++.+..
T Consensus       175 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~g~~~~~~  241 (437)
T 1n11_A          175 AGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAK----QNQVEVARSLLQYGGSANAE  241 (437)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCCCC
Confidence            888888888888888888888888888 77888888888888888888    77788888888888776543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.4e-32  Score=240.10  Aligned_cols=192  Identities=22%  Similarity=0.203  Sum_probs=159.9

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHhcCCCCc--ccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHH
Q 043760           24 VNCLSETPLHVAALLGHEDFAKEILPQKPRI--AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLH  101 (345)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh  101 (345)
                      +|..|+||||+||..|+.+++++|++.+++.  ++.+|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~   83 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALH   83 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence            4889999999999999999999999988762  4888999999999999999999999999999999 789999999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCcccccccCC------------cc-----------HHHHHHhcCCcccccccCCCCCCHHH
Q 043760          102 LAAMRGHIDVLEELVRAKPDAASTRLIWV------------GS-----------TEVLLENMGDFELLNAKDDYGMTILL  158 (345)
Q Consensus       102 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~------------~~-----------~~~l~~~~~~~~~~~~~d~~g~t~Lh  158 (345)
                      +|+..|+.+++++|++.+++.........            ..           .............++.+|..|.||||
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  163 (282)
T 1oy3_D           84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (282)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence            99999999999999998876422111100            00           00000011112237888999999999


Q ss_pred             HHHHcCCHHHHHHhhhcCCccccccCCC-CCcHHHHHHhcCCCCchhhHHHHHHHccccccccc
Q 043760          159 LAVADKQIEAIKFLTTSTAIEVNAVTAN-GFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDL  221 (345)
Q Consensus       159 ~A~~~g~~~~v~~Ll~~~~~~~~~~n~~-g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~  221 (345)
                      +|+..|+.+++++|++. |++++.++.. |+||||+|+.    .++.+++++|++.|+++....
T Consensus       164 ~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~gad~~~~d  222 (282)
T 1oy3_D          164 VAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVE----AQAASVLELLLKAGADPTARM  222 (282)
T ss_dssp             HHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcCHHHHHHH----cCCHHHHHHHHHcCCCCcccc
Confidence            99999999999999999 8999999865 9999999999    889999999999999886543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=1.3e-32  Score=242.94  Aligned_cols=183  Identities=16%  Similarity=0.201  Sum_probs=163.4

Q ss_pred             CCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHH-----HcCCHHH
Q 043760            3 GSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIAS-----QKGYVGI   77 (345)
Q Consensus         3 g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~-----~~g~~~i   77 (345)
                      |+++.++.+++...+.. .+..|..|+||||+|+..|+.+++++|++.++..++..|..|.||||+|+     ..++.++
T Consensus        87 ~~~~~~~~l~~~~~~~~-~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~  165 (276)
T 4hbd_A           87 RHLVTFRAMSARLLDYV-VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIET  165 (276)
T ss_dssp             HHHHHHHHHCHHHHHHH-HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhc-CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHH
Confidence            45666777766554421 12348899999999999999999999999998444999999999999999     6789999


Q ss_pred             HHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHH
Q 043760           78 VKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTIL  157 (345)
Q Consensus        78 v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~L  157 (345)
                      +++|++.|.+. ...+..|+||||+|+..|+.+++++|++.|++                        ++.+|..|+|||
T Consensus       166 v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad------------------------~n~~d~~G~TpL  220 (276)
T 4hbd_A          166 VLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD------------------------VNVQDDDGSTAL  220 (276)
T ss_dssp             HHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHH
T ss_pred             HHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC------------------------CCCCCCCCCCHH
Confidence            99999999887 78899999999999999999999999999998                        899999999999


Q ss_pred             HHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccc
Q 043760          158 LLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGA  215 (345)
Q Consensus       158 h~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga  215 (345)
                      |+|+..|+.+++++|++..|++++.+|..|+||||+|+.    .++.+++++|++++.
T Consensus       221 h~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          221 MCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALD----AGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHHCC
T ss_pred             HHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHH----cCCHHHHHHHHhccC
Confidence            999999999999999995599999999999999999999    889999999998653

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=1.6e-32  Score=223.26  Aligned_cols=160  Identities=29%  Similarity=0.341  Sum_probs=148.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  104 (345)
                      |..|.||||.|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHH
Confidence            6779999999999999999999999766555788899999999999999999999999999999 889999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccC
Q 043760          105 MRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVT  184 (345)
Q Consensus       105 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n  184 (345)
                      ..|+.+++++|++.+++                        ++.+|..|+||||+|+..|+.+++++|++. |++++.+|
T Consensus        84 ~~~~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~  138 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAV------------------------VNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKN  138 (165)
T ss_dssp             HTTCHHHHHHHHHTTCC------------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCC
T ss_pred             HcCcHHHHHHHHhCCCC------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccC
Confidence            99999999999999998                        889999999999999999999999999999 99999999


Q ss_pred             CCCCcHHHHHHhcCCCCchhhHHHHHHHccc
Q 043760          185 ANGFTAWDILAQSKRDIKDWDTGELLRRAGA  215 (345)
Q Consensus       185 ~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga  215 (345)
                      ..|+||||+|..     ++.+++++|++.||
T Consensus       139 ~~g~t~l~~a~~-----~~~~i~~~L~~~gA  164 (165)
T 3twr_A          139 RDGNTPLDLVKD-----GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TTSCCTGGGSCT-----TCHHHHHHHHTC--
T ss_pred             CCCCChhHhHhc-----CChHHHHHHhhccc
Confidence            999999999755     45699999999887

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=4e-32  Score=224.10  Aligned_cols=164  Identities=21%  Similarity=0.146  Sum_probs=153.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHH
Q 043760           26 CLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM  105 (345)
Q Consensus        26 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  105 (345)
                      ..+.++||.|+..|+.+++++|++.++..++.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            457899999999999999999999976655899999999999999999999999999999999 7899999999999999


Q ss_pred             cCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCC
Q 043760          106 RGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTA  185 (345)
Q Consensus       106 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~  185 (345)
                      .|+.+++++|++.+++                        ++.+|..|.||||+|+..|+.+++++|++. |++++.+|.
T Consensus        82 ~~~~~~v~~Ll~~g~~------------------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~  136 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKAD------------------------INAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNK  136 (179)
T ss_dssp             TTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCT
T ss_pred             cCCHHHHHHHHHcCCC------------------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhcc
Confidence            9999999999999998                        899999999999999999999999999999 999999999


Q ss_pred             CCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          186 NGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       186 ~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      .|.||||+|+.    .++.+++++|++.|++.+.
T Consensus       137 ~g~tpl~~A~~----~~~~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          137 YGEMPVDKAKA----PLRELLRERAEKMGQNLNR  166 (179)
T ss_dssp             TSCCGGGGSCH----HHHHHHHHHHHHTTCCCSC
T ss_pred             CCCCcHHHHHH----HHHHHHHHHHHHhhcCccc
Confidence            99999999998    7889999999999998865

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.98  E-value=2e-31  Score=228.88  Aligned_cols=174  Identities=18%  Similarity=0.190  Sum_probs=150.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcC-CCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCC----cCCCCCCCcHHH
Q 043760           27 LSETPLHVAALLGHEDFAKEILPQ-KPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC----SDTDVDGRNPLH  101 (345)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~----~~~d~~g~tpLh  101 (345)
                      .|+||||+|+..|+.+++++|++. +.++ +.+|..|+||||+|+..|+.+++++|+++|+++.    ...|..|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            489999999999999999999998 7776 8899999999999999999999999999998763    456779999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCcccc
Q 043760          102 LAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVN  181 (345)
Q Consensus       102 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  181 (345)
                      +|+..|+.+++++|++.+++.........           .....+..|..|.||||+|+..|+.+++++|++. |++++
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~-----------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~  148 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASVSARATGSV-----------FHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH-GADIR  148 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCCSGG-----------GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT-TCCTT
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCcccCCcc-----------eeecccccccCCCCHHHHHHHcCCHHHHHHHHHC-CCCCC
Confidence            99999999999999999988433211000           0001334566899999999999999999999999 99999


Q ss_pred             ccCCCCCcHHHHHHhcCCCCchhhHH----HHHHHccccc
Q 043760          182 AVTANGFTAWDILAQSKRDIKDWDTG----ELLRRAGAIS  217 (345)
Q Consensus       182 ~~n~~g~T~L~~a~~~~~~~~~~~i~----~~L~~~ga~~  217 (345)
                      .+|..|+||||+|+.    .++.+++    ++|++.|++.
T Consensus       149 ~~d~~g~t~L~~A~~----~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          149 AQDSLGNTVLHILIL----QPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             CCCTTSCCHHHHHHT----CSCHHHHHHHHHHHHHTTCSC
T ss_pred             CCCCCCCCHHHHHHH----cCChHHHHHHHHHHHhcCCch
Confidence            999999999999999    7777777    9999999976

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=2.9e-32  Score=234.84  Aligned_cols=180  Identities=23%  Similarity=0.263  Sum_probs=155.7

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHhcCCCC---cccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHH
Q 043760           24 VNCLSETPLHVAALLGHEDFAKEILPQKPR---IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPL  100 (345)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL  100 (345)
                      +|..|+||||+|+..|+.+++++|++.+..   .++.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.|||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L   82 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPL   82 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHH
Confidence            488999999999999999999999998763   24888999999999999999999999999999999 78999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccc
Q 043760          101 HLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEV  180 (345)
Q Consensus       101 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  180 (345)
                      |+|+..|+.+++++|++.+++....                  ..++..+..|.||||+|+..|+.+++++|++. |+++
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~  143 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLH------------------SILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADV  143 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSS------------------CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCT
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHH------------------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCC
Confidence            9999999999999999998763211                  12678889999999999999999999999999 8999


Q ss_pred             cccCC-CCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccch
Q 043760          181 NAVTA-NGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNE  227 (345)
Q Consensus       181 ~~~n~-~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~  227 (345)
                      +.++. .|+||||+|+.    .++.+++++|++.|++..........+
T Consensus       144 ~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~~~~~~g~tp  187 (236)
T 1ikn_D          144 NAQEPCNGRTALHLAVD----LQNPDLVSLLLKCGADVNRVTYQGYSP  187 (236)
T ss_dssp             TCCCTTTCCCHHHHHHH----TTCHHHHHHHHTTTCCSCCCCTTCCCG
T ss_pred             CCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCCcccCCCCCH
Confidence            99998 99999999999    889999999999999886543333333

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.98  E-value=1.9e-31  Score=214.31  Aligned_cols=151  Identities=28%  Similarity=0.351  Sum_probs=144.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcC
Q 043760           28 SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG  107 (345)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  107 (345)
                      ..|+||.|+..|+.+++++|++.+.++ + .|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence            468999999999999999999999876 4 5889999999999999999999999999999 789999999999999999


Q ss_pred             cHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCC
Q 043760          108 HIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANG  187 (345)
Q Consensus       108 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g  187 (345)
                      +.+++++|++.+++                        ++.+|..|+||||+|+..|+.+++++|++. |++++.+|..|
T Consensus        79 ~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g  133 (153)
T 1awc_B           79 HANIVEVLLKHGAD------------------------VNAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFC  133 (153)
T ss_dssp             CHHHHHHHHTTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS
T ss_pred             hHHHHHHHHHcCCC------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCC
Confidence            99999999999988                        899999999999999999999999999999 99999999999


Q ss_pred             CcHHHHHHhcCCCCchhhHHHHH
Q 043760          188 FTAWDILAQSKRDIKDWDTGELL  210 (345)
Q Consensus       188 ~T~L~~a~~~~~~~~~~~i~~~L  210 (345)
                      +||||+|+.    .++.+++++|
T Consensus       134 ~t~l~~A~~----~~~~~i~~~L  152 (153)
T 1awc_B          134 KTAFDISID----NGNEDLAEIL  152 (153)
T ss_dssp             CCHHHHHHH----TTCHHHHHHH
T ss_pred             CCHHHHHHH----cCCHHHHHHh
Confidence            999999999    8889999987

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=1.6e-31  Score=237.00  Aligned_cols=164  Identities=16%  Similarity=0.057  Sum_probs=115.3

Q ss_pred             CHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcC
Q 043760           40 HEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAK  119 (345)
Q Consensus        40 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  119 (345)
                      ..++.++|.+.  ++ +.+|..|.||||+|+..|+.+++++|+++|+++ +..  +|+||||+|+..|+.+++++|++.|
T Consensus        12 ~~~v~~lL~~~--~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g   85 (285)
T 3kea_A           12 SKQLKSFLSSK--DT-FKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILLFSG   85 (285)
T ss_dssp             HHHHHHHHHST--TT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred             HHHHHHHHHhC--CC-CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            34555555554  34 788999999999999999999999999999998 454  4999999999999999999999999


Q ss_pred             CCcccccccCCcc-------------HHHHHHhcCCcccccccCCCC-CCHHHHHHHcCCHHHHHHhhhcCCccccccCC
Q 043760          120 PDAASTRLIWVGS-------------TEVLLENMGDFELLNAKDDYG-MTILLLAVADKQIEAIKFLTTSTAIEVNAVTA  185 (345)
Q Consensus       120 ~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~~d~~g-~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~  185 (345)
                      ++.... +..+.+             +++|++.+.+   ++.+|..| .||||+|+..|+.+++++|++. |+++... .
T Consensus        86 a~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~  159 (285)
T 3kea_A           86 LDDSQF-DDKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPSTFDL-A  159 (285)
T ss_dssp             CCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCGG---GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT-SCTTCCC-S
T ss_pred             CCCCCc-CCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CCccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCccccc-c
Confidence            984332 222322             5555555444   56666666 5666666666666666666666 4343211 1


Q ss_pred             CCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          186 NGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       186 ~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      .|.||||+|+.    .++.+++++|++.|++++.
T Consensus       160 ~g~t~L~~A~~----~g~~~~v~~Ll~~gad~n~  189 (285)
T 3kea_A          160 ILLSCIHITIK----NGHVDMMILLLDYMTSTNT  189 (285)
T ss_dssp             THHHHHHHHHH----TTCHHHHHHHHHHHHHTCT
T ss_pred             CCccHHHHHHH----cChHHHHHHHHHcCCCCCc
Confidence            56666666666    5666666666666666544

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=1.2e-30  Score=218.79  Aligned_cols=171  Identities=23%  Similarity=0.281  Sum_probs=153.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  104 (345)
                      +..+.||||.|+..|+.+.++.|+..++..++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~   80 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAG   80 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            4568999999999999999999999988444889999999999999999999999999999999 789999999999999


Q ss_pred             HcCcHHHHHHHHhcC-CCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCcccccc
Q 043760          105 MRGHIDVLEELVRAK-PDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAV  183 (345)
Q Consensus       105 ~~g~~~iv~~Ll~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  183 (345)
                      ..|+.+++++|++.+ .+                        ++..|..|.||||+|+..|+.+++++|++.++++++.+
T Consensus        81 ~~~~~~~~~~Ll~~~~~~------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  136 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPD------------------------LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ  136 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCC------------------------TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCC
T ss_pred             HcCCHHHHHHHHhccCcc------------------------cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCC
Confidence            999999999999554 44                        88899999999999999999999999999955999999


Q ss_pred             CCCCCcHHHHHHhcCC-CCchhhHHHHHHHcccccccc
Q 043760          184 TANGFTAWDILAQSKR-DIKDWDTGELLRRAGAISAKD  220 (345)
Q Consensus       184 n~~g~T~L~~a~~~~~-~~~~~~i~~~L~~~ga~~~~~  220 (345)
                      |..|+||||+|+.... ..++.+++++|++.|+++...
T Consensus       137 ~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~  174 (201)
T 3hra_A          137 NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK  174 (201)
T ss_dssp             CTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCC
T ss_pred             CCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCcc
Confidence            9999999999998322 222389999999999988653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=3.6e-32  Score=250.34  Aligned_cols=188  Identities=16%  Similarity=0.156  Sum_probs=162.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHh--------cCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCC
Q 043760           26 CLSETPLHVAALLGHEDFAKEIL--------PQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGR   97 (345)
Q Consensus        26 ~~g~t~Lh~Aa~~g~~~~v~~Ll--------~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~   97 (345)
                      ..|+||||+||..|+.+++++|+        +.|.++ +.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~  200 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSER  200 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCC
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCC
Confidence            68999999999999998887776        788888 899999999999999999999999999999999 78999999


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcC---CCcccccccCCcc----------------HHHHHHhcCCccc-----ccccCCCC
Q 043760           98 NPLHLAAMRGHIDVLEELVRAK---PDAASTRLIWVGS----------------TEVLLENMGDFEL-----LNAKDDYG  153 (345)
Q Consensus        98 tpLh~A~~~g~~~iv~~Ll~~~---~~~~~~~~~~~~~----------------~~~l~~~~~~~~~-----~~~~d~~g  153 (345)
                      ||||+|+..|+.+++++|++.+   .+.... +..+.+                ++.|++.+.+...     .+..|..|
T Consensus       201 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g  279 (373)
T 2fo1_E          201 SALHQAAANRDFGMMVYMLNSTKLKGDIEEL-DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  279 (373)
T ss_dssp             CHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC-CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             CHHHHHHHCCCHHHHHHHHhcCccccChhhc-CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccC
Confidence            9999999999999999999876   232211 222222                6777777766221     23467899


Q ss_pred             CCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccc
Q 043760          154 MTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKD  220 (345)
Q Consensus       154 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~  220 (345)
                      .||||+|+..|+.+++++|++.++++++.+|..|+||||+|+.    .++.+++++|++.|++.+..
T Consensus       280 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~gad~~~~  342 (373)
T 2fo1_E          280 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ----EGRIEVVMYLIQQGASVEAV  342 (373)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCSSCC
T ss_pred             CCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCccCC
Confidence            9999999999999999999999779999999999999999999    88999999999999988653

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=7.5e-31  Score=211.29  Aligned_cols=154  Identities=25%  Similarity=0.316  Sum_probs=144.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcC
Q 043760           28 SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG  107 (345)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  107 (345)
                      +.||||.|+..|+.+++++|++......+..|..|.||||+ +..|+.+++++|+++|+++ +..|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence            56899999999999999999998332338889999999999 9999999999999999999 889999999999999999


Q ss_pred             cHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCC
Q 043760          108 HIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANG  187 (345)
Q Consensus       108 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g  187 (345)
                      +.+++++|++.|++                        ++.+|..|+||||+|+..|+.+++++|++.  ++++.+|..|
T Consensus        80 ~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g  133 (156)
T 1bd8_A           80 FLDTLKVLVEHGAD------------------------VNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARG  133 (156)
T ss_dssp             CHHHHHHHHHTTCC------------------------SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTS
T ss_pred             cHHHHHHHHHcCCC------------------------CCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCC
Confidence            99999999999988                        889999999999999999999999999998  7999999999


Q ss_pred             CcHHHHHHhcCCCCchhhHHHHHHHc
Q 043760          188 FTAWDILAQSKRDIKDWDTGELLRRA  213 (345)
Q Consensus       188 ~T~L~~a~~~~~~~~~~~i~~~L~~~  213 (345)
                      .||||+|+.    .++.+++++|+++
T Consensus       134 ~t~l~~A~~----~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          134 LTPLELALQ----RGAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHH----SCCHHHHHHHHTT
T ss_pred             CCHHHHHHH----cCcHHHHHHHHhh
Confidence            999999999    8899999999863

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=9.8e-31  Score=214.19  Aligned_cols=160  Identities=24%  Similarity=0.265  Sum_probs=145.4

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+++.++.|++.++...+.  .+..|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|
T Consensus        12 ~g~~~~v~~ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L   88 (172)
T 3v30_A           12 QGELDQLKEHLRKGDNLVNK--PDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGGYTDIVGLL   88 (172)
T ss_dssp             TTCHHHHHHHHTTCSGGGGC--CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCcccccC--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCCCHHHHHHH
Confidence            68999999999999875443  3889999999999999999999999999998 88999999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      +++|+++ +..|..|.||||+|+..|+.+++++|++.|++                        ++.+|..|.||||+|+
T Consensus        89 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------------------------~~~~~~~g~t~l~~A~  143 (172)
T 3v30_A           89 LERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD------------------------LTTEADSGYTPMDLAV  143 (172)
T ss_dssp             HTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHH
T ss_pred             HHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------------ccccCCCCCCHHHHHH
Confidence            9999999 88999999999999999999999999999988                        8899999999999999


Q ss_pred             HcCCHHHHHHhhhcCCccccccCCCCCcH
Q 043760          162 ADKQIEAIKFLTTSTAIEVNAVTANGFTA  190 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~  190 (345)
                      ..|+.+++++|+++ ++++...|..|.||
T Consensus       144 ~~~~~~~~~~L~~~-~~~~~~~~~~~~~p  171 (172)
T 3v30_A          144 ALGYRKVQQVIENH-ILKLFQSNLVPADP  171 (172)
T ss_dssp             HHTCHHHHHHHHHH-HHHHSCC-------
T ss_pred             HhCcHHHHHHHHHH-HHHHhcccCCCCCC
Confidence            99999999999999 88999999998887

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=5.7e-30  Score=232.64  Aligned_cols=199  Identities=21%  Similarity=0.231  Sum_probs=171.3

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++|+.|++.+.++...   |..|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|
T Consensus        68 ~g~~~~v~~Ll~~g~~~~~~---~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L  143 (351)
T 3utm_A           68 YNRVRIVQLLLQHGADVHAK---DKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLL  143 (351)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC---CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCcc---CCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            58999999999999886554   889999999999999999999999999998 88899999999999999999999999


Q ss_pred             HhhCCCCCcC------------------------------------------------------CCCCCCcHHHHHHHc-
Q 043760           82 LQVIPDKCSD------------------------------------------------------TDVDGRNPLHLAAMR-  106 (345)
Q Consensus        82 l~~~~~~~~~------------------------------------------------------~d~~g~tpLh~A~~~-  106 (345)
                      +++|+++ +.                                                      .+..|.||||+|+.. 
T Consensus       144 l~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~  222 (351)
T 3utm_A          144 LSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASL  222 (351)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCC
T ss_pred             HHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHh
Confidence            9999886 33                                                      335678999999998 


Q ss_pred             --CcHHHHHHHHhcCCCcccccccCCcc-------------HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHH
Q 043760          107 --GHIDVLEELVRAKPDAASTRLIWVGS-------------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKF  171 (345)
Q Consensus       107 --g~~~iv~~Ll~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~  171 (345)
                        +..+++++|++.+.+.... +..+.+             +++|++.+.+   ++.+|..|+||||+|+..|+.+++++
T Consensus       223 ~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~n~~d~~g~t~L~~A~~~~~~~~v~~  298 (351)
T 3utm_A          223 HPKRKQVAELLLRKGANVNEK-NKDFMTPLHVAAERAHNDVMEVLHKHGAK---MNALDSLGQTALHRAALAGHLQTCRL  298 (351)
T ss_dssp             STTHHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             CccHHHHHHHHHHcCCCcCCc-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence              6689999999999886543 334444             7888887777   89999999999999999999999999


Q ss_pred             hhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccc
Q 043760          172 LTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISA  218 (345)
Q Consensus       172 Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~  218 (345)
                      |+++ |++++.+|..|+||+|+|..        +++++|.+.+....
T Consensus       299 Ll~~-gad~~~~~~~g~tal~~a~~--------~~~~~l~~~~~~~~  336 (351)
T 3utm_A          299 LLSY-GSDPSIISLQGFTAAQMGNE--------AVQQILSESTPMRT  336 (351)
T ss_dssp             HHHT-TCCTTCCCTTSCCHHHHSCH--------HHHHHHHHC-----
T ss_pred             HHHc-CCCCCCcCCCCCChhhhhhH--------HHHHHHHhcccccc
Confidence            9999 99999999999999999854        68888888776543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=5e-31  Score=241.76  Aligned_cols=192  Identities=20%  Similarity=0.155  Sum_probs=166.6

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHH
Q 043760           24 VNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLA  103 (345)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  103 (345)
                      .|..|.||||+||..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|+++|+++   .+.+|.||||+|
T Consensus        16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A   91 (364)
T 3ljn_A           16 SDDENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLA   91 (364)
T ss_dssp             CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHH
Confidence            4778999999999999999999999999998 899999999999999999999999999999965   345899999999


Q ss_pred             HHcCcHHHHHHHHhc----CCCcccc----------------cccCCc---------------cHHHHHHhcCCcccccc
Q 043760          104 AMRGHIDVLEELVRA----KPDAAST----------------RLIWVG---------------STEVLLENMGDFELLNA  148 (345)
Q Consensus       104 ~~~g~~~iv~~Ll~~----~~~~~~~----------------~~~~~~---------------~~~~l~~~~~~~~~~~~  148 (345)
                      +..|+.+++++|++.    +.+....                .+..+.               .+++|++.+.+   ++.
T Consensus        92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~---~~~  168 (364)
T 3ljn_A           92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS---PTA  168 (364)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC---TTC
T ss_pred             HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC---Ccc
Confidence            999999999999998    5554430                111222               27788888776   899


Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHhhhcCCcc-----ccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCC
Q 043760          149 KDDYGMTILLLAVADKQIEAIKFLTTSTAIE-----VNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQL  223 (345)
Q Consensus       149 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~  223 (345)
                      +|..|.||||+|+..|+.+++++|++. |++     ++.+|..|+||||+|+.    .++.+++++|++.|++++.....
T Consensus       169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~gad~~~~d~~  243 (364)
T 3ljn_A          169 KDKADETPLMRAMEFRNREALDLMMDT-VPSKSSLRLDYANKQGNSHLHWAIL----INWEDVAMRFVEMGIDVNMEDNE  243 (364)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHH-CSCSSSCCTTCCCTTCCCTTHHHHT----TTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhc-ccccccccccccCCCCCcHHHHHHH----cCCHHHHHHHHHcCCCCCCCCCC
Confidence            999999999999999999999999998 777     99999999999999999    88999999999999998654433


Q ss_pred             ccch
Q 043760          224 PVNE  227 (345)
Q Consensus       224 ~~~~  227 (345)
                      ..++
T Consensus       244 g~tp  247 (364)
T 3ljn_A          244 HTVP  247 (364)
T ss_dssp             SCCH
T ss_pred             CCCH
Confidence            3333

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=1.4e-29  Score=229.69  Aligned_cols=182  Identities=24%  Similarity=0.201  Sum_probs=160.3

Q ss_pred             CCCHHHHHHHHhcCCccccCC-------CCCCCCCcHHHHHHHcCCHHHHHHHhc-CCCCcccccCCCCchHHHHHHHcC
Q 043760            2 AGSVNTLLELRQQDPLILERP-------TVNCLSETPLHVAALLGHEDFAKEILP-QKPRIAEELDSRKSSALHIASQKG   73 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~-------~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~g~tpLh~A~~~g   73 (345)
                      .|+.++++.|++.++++....       ..+..|.||||+|+..|+.+++++|++ .+.++ +.+|..|.|+||.++..+
T Consensus       135 ~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~  213 (337)
T 4g8k_A          135 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSS  213 (337)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHS
T ss_pred             cCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHc
Confidence            588999999999987654321       235679999999999999999999996 47787 899999999999988765


Q ss_pred             C----HHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhc-CCCcccccccCCccHHHHHHhcCCcccccc
Q 043760           74 Y----VGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRA-KPDAASTRLIWVGSTEVLLENMGDFELLNA  148 (345)
Q Consensus        74 ~----~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  148 (345)
                      .    .+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|++. +.+                        ++.
T Consensus       214 ~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~------------------------vn~  268 (337)
T 4g8k_A          214 DDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE------------------------IND  268 (337)
T ss_dssp             CTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC------------------------TTC
T ss_pred             CcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc------------------------ccC
Confidence            4    46889999999999 88999999999999999999999999986 556                        899


Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          149 KDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       149 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      +|..|+||||+|++.|+.++|++||++ |+++|.+     +|||+|+.    .++.+++++|+++||+++.
T Consensus       269 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~-GAd~n~~-----~~L~~A~~----~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          269 TDSDGKTALLLAVELKLKKIAELLCKR-GASTDCG-----DLVMTARR----NYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             BCTTSCBHHHHHHHTTCHHHHHHHHTT-SCSSTTC-----CHHHHHHH----TTCHHHHHHHHHTTCCC--
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC-----CHHHHHHH----cCCHHHHHHHHHCcCCCCC
Confidence            999999999999999999999999999 8898764     59999999    8889999999999998854

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.1e-30  Score=227.79  Aligned_cols=163  Identities=20%  Similarity=0.191  Sum_probs=144.0

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHhcCCCCcccc----cCCCCchHHHHHHHc---CCHHHHHHHHhhCCCCCc-----
Q 043760           27 LSETPLHVAALLGHED----FAKEILPQKPRIAEE----LDSRKSSALHIASQK---GYVGIVKALLQVIPDKCS-----   90 (345)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~----~v~~Ll~~~~~~~~~----~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~-----   90 (345)
                      .|+||||+|+..|+.+    ++++|++.+.++ +.    +|..|+||||+|+..   |+.+++++|++.|+++..     
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            4899999999999997    667777789888 66    899999999999999   999999999999887621     


Q ss_pred             -----CCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCC-------------
Q 043760           91 -----DTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDY-------------  152 (345)
Q Consensus        91 -----~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~-------------  152 (345)
                           ..|..|.||||+|+..|+.+++++|++.|++                        ++.+|..             
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------------------------~~~~~~~~~~~~~~~~~~~~  135 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD------------------------VHLRACGRFFQKHQGTCFYF  135 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCCSGGGSCCSSSCCCS
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC------------------------CCcccccccccccccccccC
Confidence                 2347899999999999999999999999998                        5666554             


Q ss_pred             CCCHHHHHHHcCCHHHHHHhhh---cCCccccccCCCCCcHHHHHHhcCCCCchhh-------HHHHHHHccccc
Q 043760          153 GMTILLLAVADKQIEAIKFLTT---STAIEVNAVTANGFTAWDILAQSKRDIKDWD-------TGELLRRAGAIS  217 (345)
Q Consensus       153 g~t~Lh~A~~~g~~~~v~~Ll~---~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~-------i~~~L~~~ga~~  217 (345)
                      |.||||+|+..|+.+++++|++   . |++++.+|..|+||||+|+...  .++.+       ++++|++.|++.
T Consensus       136 g~tpL~~A~~~~~~~~v~~Ll~~~~~-ga~~n~~d~~g~TpLh~A~~~~--~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          136 GELPLSLAACTKQWDVVTYLLENPHQ-PASLEATDSLGNTVLHALVMIA--DNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             CSSHHHHHHHTTCHHHHHHHHHCSSC-CCCTTCCCTTSCCHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccc-CCCcCccCCCCCCHHHHHHHcc--cCCchhhHHHHHHHHHHHHcCCCc
Confidence            9999999999999999999999   6 9999999999999999999732  23455       999999999988

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=1.9e-30  Score=224.20  Aligned_cols=163  Identities=21%  Similarity=0.199  Sum_probs=121.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  104 (345)
                      +..|+||||.|+..|+.+.++.|+++|.++ +. +..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAV   78 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCc-cc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence            346999999999999999999999999987 54 578899999999999999999999999998 889999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccC
Q 043760          105 MRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVT  184 (345)
Q Consensus       105 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n  184 (345)
                      ..|+.+++++|++++++                        ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|
T Consensus        79 ~~g~~~~v~~Ll~~ga~------------------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~  133 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVN------------------------VNAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMT  133 (239)
T ss_dssp             HHTCHHHHHHHHHHTCC------------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCC
T ss_pred             HcCCHHHHHHHHHcCCC------------------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcceec
Confidence            99999999999999998                        899999999999999999999999999999 99999999


Q ss_pred             CCCC-cHHHHH--HhcCCCCchhhHHHHHHHccccccc
Q 043760          185 ANGF-TAWDIL--AQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       185 ~~g~-T~L~~a--~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      ..|. ||||+|  +.    .++.+++++|++.|++...
T Consensus       134 ~~~~~t~l~~a~~~~----~g~~~~~~~Ll~~~a~~~~  167 (239)
T 1ycs_B          134 YSDMQTAADKCEEME----EGYTQCSQFLYGVQEKMGI  167 (239)
T ss_dssp             SSSCCCHHHHCCSSS----TTCCCHHHHHHHHHHHTTT
T ss_pred             CCCCcchHHHHHHhh----hccHHHHHHHHHhhhcccc
Confidence            8887 999998  44    6789999999999998754

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=6.8e-30  Score=227.58  Aligned_cols=166  Identities=26%  Similarity=0.291  Sum_probs=151.3

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++|+.|++.++++...   |..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.++++.+
T Consensus        83 ~g~~~~v~~Ll~~ga~~~~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~l  158 (299)
T 1s70_B           83 DDNVDMVKFLVENGANINQP---DNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNE  158 (299)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC---CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCC---CCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHH
Confidence            58999999999999886554   889999999999999999999999999998 88899999999999999999999877


Q ss_pred             Hhh-CC-------------------------CCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHH
Q 043760           82 LQV-IP-------------------------DKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEV  135 (345)
Q Consensus        82 l~~-~~-------------------------~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~  135 (345)
                      +.. +.                         ......+..|.||||+|+..|+.+++++|++.|++              
T Consensus       159 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d--------------  224 (299)
T 1s70_B          159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD--------------  224 (299)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC--------------
T ss_pred             HhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC--------------
Confidence            653 22                         22234677899999999999999999999999988              


Q ss_pred             HHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHh
Q 043760          136 LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ  196 (345)
Q Consensus       136 l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~  196 (345)
                                ++.+|..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.
T Consensus       225 ----------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          225 ----------VNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             ----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTTTSCCS
T ss_pred             ----------CCCcCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence                      899999999999999999999999999999 99999999999999999976

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=3.4e-30  Score=233.01  Aligned_cols=194  Identities=18%  Similarity=0.101  Sum_probs=126.7

Q ss_pred             HHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCC---HHHHHHH
Q 043760            5 VNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGY---VGIVKAL   81 (345)
Q Consensus         5 ~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~iv~~L   81 (345)
                      .++++.|++.+.++...  .|..|+||||+||..|+.++|++|+++|+++ +.+|..|+||||+|+..|+   .++++.|
T Consensus       110 ~~~~~~l~~~g~dvn~~--~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~l  186 (327)
T 1sw6_A          110 QEVNDAFPNTQLNLNIP--VDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEAL  186 (327)
T ss_dssp             HHHHHHCTTSCCCSCSC--CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHH
T ss_pred             HHHHHHHHhcCCCcccc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHH
Confidence            35667777777775541  3889999999999999999999999999998 8999999999999999999   6888888


Q ss_pred             HhhC-CCCCcCCCCCCCcHHHHHHH----cCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCH
Q 043760           82 LQVI-PDKCSDTDVDGRNPLHLAAM----RGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTI  156 (345)
Q Consensus        82 l~~~-~~~~~~~d~~g~tpLh~A~~----~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~  156 (345)
                      ++.+ +++ +..|..|+||||+|+.    .|+.+++++|++.+.......... .....+.+.+.   .++.+|..|.||
T Consensus       187 l~~~~~~~-~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~-~i~~~~~~~g~---~~~~~~~~g~t~  261 (327)
T 1sw6_A          187 LDYLYPCL-ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR-PIQSGTNEKES---KPNDKNGERKDS  261 (327)
T ss_dssp             HHHHGGGG-GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGC-CEEEC-------------------CH
T ss_pred             HHhhhccc-cCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccch-HHHhhhhcccC---CcccccccCCCh
Confidence            8887 455 8899999999999999    899999999998743110000000 00000000001   144555555555


Q ss_pred             HHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          157 LLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       157 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      ||+|+.      +++|++.   +++.+|..|+||||+|+.    .++.+++++|++.||++..
T Consensus       262 L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~----~g~~~~v~~Ll~~Gad~~~  311 (327)
T 1sw6_A          262 ILENLD------LKWIIAN---MLNAQDSNGDTCLNIAAR----LGNISIVDALLDYGADPFI  311 (327)
T ss_dssp             HHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHH----HCCHHHHHHHHHTTCCTTC
T ss_pred             hHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence            555553      5555544   355555555555555555    4455555555555555433

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=2.2e-29  Score=203.94  Aligned_cols=148  Identities=26%  Similarity=0.379  Sum_probs=137.8

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++++.|++.++++...   +..|+||||+|+. |+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|
T Consensus        15 ~g~~~~v~~Ll~~~~~~~~~---~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L   89 (162)
T 1ihb_A           15 RGDLEQLTSLLQNNVNVNAQ---NGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTL   89 (162)
T ss_dssp             HTCHHHHHHHTTSCCCTTCC---CTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcccc---CccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            58999999999999886544   8899999999999 9999999999999998 88999999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      +++|+++ +..|..|.||||+|+..|+.+++++|++.+++.                       ++.+|..|.||||+|+
T Consensus        90 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------------------~~~~~~~g~t~l~~A~  145 (162)
T 1ihb_A           90 LEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN-----------------------VGHRNHKGDTACDLAR  145 (162)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC-----------------------TTCCCTTSCCHHHHHH
T ss_pred             HHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC-----------------------CCCcCCCCCcHHHHHH
Confidence            9999999 789999999999999999999999999999873                       5889999999999999


Q ss_pred             HcCCHHHHHHhhhcCCcc
Q 043760          162 ADKQIEAIKFLTTSTAIE  179 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~~~~~  179 (345)
                      ..|+.+++++|+++ |+|
T Consensus       146 ~~~~~~~~~~Ll~~-GAd  162 (162)
T 1ihb_A          146 LYGRNEVVSLMQAN-GAG  162 (162)
T ss_dssp             HTTCHHHHHHHHHT-C--
T ss_pred             HcCCHHHHHHHHHh-CCC
Confidence            99999999999999 764

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=8.8e-29  Score=218.11  Aligned_cols=189  Identities=22%  Similarity=0.183  Sum_probs=163.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCccccc-CCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHH
Q 043760           27 LSETPLHVAALLGHEDFAKEILPQKPRIAEEL-DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM  105 (345)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  105 (345)
                      +|.||||.|+..|+.+++++|++.++++ +.. +..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+.
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   81 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHH
Confidence            4789999999999999999999999998 555 888999999999999999999999999999 7899999999999999


Q ss_pred             cCcHHHHHHHHhcCCCcccccccCCcc-------------HHHHHHhcCCccccccc----------CCCCCCHHHHHHH
Q 043760          106 RGHIDVLEELVRAKPDAASTRLIWVGS-------------TEVLLENMGDFELLNAK----------DDYGMTILLLAVA  162 (345)
Q Consensus       106 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~~----------d~~g~t~Lh~A~~  162 (345)
                      .|+.+++++|++++++.... +..+.+             +++|++.+.+   ++..          +..|.||||+|+.
T Consensus        82 ~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~~~~~~~~~~~g~t~L~~A~~  157 (285)
T 1wdy_A           82 AGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGAN---VNLRRKTKEDQERLRKGGATALMDAAE  157 (285)
T ss_dssp             HTCHHHHHHHHHTTCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCcc-CcccCCHHHHHHHhCCHHHHHHHHHhCCC---cccccccHHHHHhhccCCCcHHHHHHH
Confidence            99999999999999886433 233333             7777777666   4444          7889999999999


Q ss_pred             cCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccccc
Q 043760          163 DKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDL  221 (345)
Q Consensus       163 ~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~  221 (345)
                      .|+.+++++|++..+++++.+|..|+||||+|+.........+++++|++.|++.+...
T Consensus       158 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~  216 (285)
T 1wdy_A          158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG  216 (285)
T ss_dssp             HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCC
T ss_pred             cCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcC
Confidence            99999999999887899999999999999999984433333889999999999876533

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=4e-29  Score=214.89  Aligned_cols=186  Identities=20%  Similarity=0.175  Sum_probs=153.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHH
Q 043760           24 VNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLA  103 (345)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  103 (345)
                      .|..|.|+||.|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|+++++++....+..|.||||+|
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence            4888999999999999999999999999987 888999999999999999999999999999998666667799999999


Q ss_pred             HHcCcHHHHHHHHhcCCCcccccccCCcc-------------HHHHHHhcCCcccccccCCCCCCHHHHHHHcCC-HHHH
Q 043760          104 AMRGHIDVLEELVRAKPDAASTRLIWVGS-------------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQ-IEAI  169 (345)
Q Consensus       104 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~~v  169 (345)
                      +..|+.+++++|++.+++.... +..+.+             ++.|++.+.+   ++.+|..|.||||+|+..++ .+++
T Consensus        84 ~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~  159 (240)
T 3eu9_A           84 TRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWAAYRTHSVDPT  159 (240)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHCCSSTTH
T ss_pred             HHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCHHHHHHHHHhcCCC---ccccCCCCCcHHHHHHHhCChHHHH
Confidence            9999999999999998885432 222222             6666666555   67777778888888876655 6777


Q ss_pred             HHhhhcCCccccccCC-CCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          170 KFLTTSTAIEVNAVTA-NGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       170 ~~Ll~~~~~~~~~~n~-~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      ++|++. +++++..+. .|.||||+|+.    .++.+++++|++.|+++..
T Consensus       160 ~~L~~~-~~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~  205 (240)
T 3eu9_A          160 RLLLTF-NVSVNLGDKYHKNTALHWAVL----AGNTTVISLLLEAGANVDA  205 (240)
T ss_dssp             HHHHHT-TCCTTCCCTTTCCCHHHHHHH----HTCHHHHHHHHHHTCCTTC
T ss_pred             HHHHhc-CCCcchhhccCCCcHHHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence            777777 777777776 77788888877    6777888888888877654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=7.9e-29  Score=202.38  Aligned_cols=145  Identities=28%  Similarity=0.457  Sum_probs=138.1

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|++++|+.|++.+.++...   |..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|
T Consensus        24 ~g~~~~v~~Ll~~g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~L   99 (169)
T 2y1l_E           24 AGRDDEVRILMANGADVNAE---DASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVL   99 (169)
T ss_dssp             HTCHHHHHHHHHTTCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            58999999999999886554   889999999999999999999999999998 88999999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      +++|+++ +..|..|.||||+|+..|+.+++++|++++++                        ++.+|..|.||||+|+
T Consensus       100 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~l~~A~  154 (169)
T 2y1l_E          100 LKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD------------------------VNAQDKFGKTAFDISI  154 (169)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHH
T ss_pred             HHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------------CCCcCCCCCCHHHHHH
Confidence            9999999 78999999999999999999999999999998                        8899999999999999


Q ss_pred             HcCCHHHHHHhhhc
Q 043760          162 ADKQIEAIKFLTTS  175 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~  175 (345)
                      ..|+.+++++|++.
T Consensus       155 ~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          155 DNGNEDLAEILQKL  168 (169)
T ss_dssp             HTTCHHHHHHHHTC
T ss_pred             HhCCHHHHHHHHHc
Confidence            99999999999986

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=4e-30  Score=226.40  Aligned_cols=167  Identities=22%  Similarity=0.269  Sum_probs=143.3

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHhc----CCCCccc---ccCCCCchHHHHHHHc---CCHHHHHHHHhhCCCCC---
Q 043760           23 TVNCLSETPLHVAALLGHEDFAKEILP----QKPRIAE---ELDSRKSSALHIASQK---GYVGIVKALLQVIPDKC---   89 (345)
Q Consensus        23 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~---~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~---   89 (345)
                      ..|..|+||||+||..|+.++++.|++    .+.++..   ..|..|+||||+|+..   |+.+++++|+++|++..   
T Consensus         8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~   87 (273)
T 2pnn_A            8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK   87 (273)
T ss_dssp             ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred             CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence            348899999999999999999988886    4544411   4588999999999987   99999999999986531   


Q ss_pred             -------cCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCC-----------
Q 043760           90 -------SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDD-----------  151 (345)
Q Consensus        90 -------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~-----------  151 (345)
                             ...|..|.||||+|+..|+.+++++|+++|++                        ++.++.           
T Consensus        88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~------------------------~~~~~~~~~~~~~~~~~  143 (273)
T 2pnn_A           88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD------------------------VQAAANGDFFKKTKGRP  143 (273)
T ss_dssp             HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCBCSGGGSSCSSSC
T ss_pred             HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC------------------------cCccccccccccccccc
Confidence                   22567899999999999999999999999998                        555554           


Q ss_pred             ---CCCCHHHHHHHcCCHHHHHHhhh---cCCccccccCCCCCcHHHHHHhcCCCCch---------hhHHHHHHHcccc
Q 043760          152 ---YGMTILLLAVADKQIEAIKFLTT---STAIEVNAVTANGFTAWDILAQSKRDIKD---------WDTGELLRRAGAI  216 (345)
Q Consensus       152 ---~g~t~Lh~A~~~g~~~~v~~Ll~---~~~~~~~~~n~~g~T~L~~a~~~~~~~~~---------~~i~~~L~~~ga~  216 (345)
                         .|.||||+|+..|+.+++++|++   . |++++.+|..|+||||+|+.    .++         .+++++|++.|++
T Consensus       144 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~-gad~~~~d~~g~tpLh~A~~----~~~~~~~~~~~~~~~v~~Ll~~ga~  218 (273)
T 2pnn_A          144 GFYFGELPLSLAACTNQLAIVKFLLQNSWQ-PADISARDSVGNTVLHALVE----VADNTVDNTKFVTSMYNEILILGAK  218 (273)
T ss_dssp             CCCSCBSHHHHHHHTTCHHHHHHHHHCSSC-CCCTTCCCTTSCCHHHHHHH----HCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhcccC-CCCceeeCCCCCcHHHHHHH----ccCcchhHHHHHHHHHHHHHHhhhh
Confidence               89999999999999999999999   6 99999999999999999998    333         6899999999998


Q ss_pred             cc
Q 043760          217 SA  218 (345)
Q Consensus       217 ~~  218 (345)
                      .+
T Consensus       219 ~n  220 (273)
T 2pnn_A          219 LH  220 (273)
T ss_dssp             HC
T ss_pred             cc
Confidence            75

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=6.9e-29  Score=204.61  Aligned_cols=157  Identities=22%  Similarity=0.238  Sum_probs=146.3

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++|+.|++.++...+.  .+..|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|
T Consensus        15 ~g~~~~v~~ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L   91 (179)
T 3f6q_A           15 EGNAVAVRLWLDNTENDLNQ--GDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKL   91 (179)
T ss_dssp             HTCHHHHHHHHHCTTSCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhcCcccccc--cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            58999999999986654333  4889999999999999999999999999998 88999999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      +++|+++ +..|..|.||||+|+..|+.+++++|+++|++                        ++.+|..|.||||+|+
T Consensus        92 l~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------------------------~~~~~~~g~tpl~~A~  146 (179)
T 3f6q_A           92 LQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL------------------------VSICNKYGEMPVDKAK  146 (179)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------------------SSBCCTTSCCGGGGSC
T ss_pred             HHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------------------------cchhccCCCCcHHHHH
Confidence            9999999 88999999999999999999999999999998                        8899999999999999


Q ss_pred             HcCCHHHHHHhhhcCCccccccCCCC
Q 043760          162 ADKQIEAIKFLTTSTAIEVNAVTANG  187 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~~~~~~~~~n~~g  187 (345)
                      ..++.+++++|++. |++++..+.++
T Consensus       147 ~~~~~~~~~~L~~~-g~~~~~~~~~~  171 (179)
T 3f6q_A          147 APLRELLRERAEKM-GQNLNRIPYKD  171 (179)
T ss_dssp             HHHHHHHHHHHHHT-TCCCSCBCCCC
T ss_pred             HHHHHHHHHHHHHh-hcCcccCCccc
Confidence            99999999999999 88999877665

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.3e-28  Score=200.52  Aligned_cols=148  Identities=26%  Similarity=0.300  Sum_probs=139.4

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++++.|++.+.++...   |..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|
T Consensus        13 ~g~~~~v~~ll~~~~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L   88 (167)
T 3v31_A           13 QGEMLYLATRIEQENVINHT---DEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYTDIVKML   88 (167)
T ss_dssp             TTCHHHHHHHHHHSSCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCcCCC---CCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            68999999999998775443   889999999999999999999999999998 88899999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      +++|+++ +..|..|.||||+|+..|+.+++++|+++|++                        ++.+|..|.||||+|+
T Consensus        89 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~l~~A~  143 (167)
T 3v31_A           89 LDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD------------------------PTIETDSGYNSMDLAV  143 (167)
T ss_dssp             HHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHH
T ss_pred             HHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------------CCCcCCCCCCHHHHHH
Confidence            9999999 78999999999999999999999999999998                        8889999999999999


Q ss_pred             HcCCHHHHHHhhhcCCcc
Q 043760          162 ADKQIEAIKFLTTSTAIE  179 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~~~~~  179 (345)
                      ..|+.+++++|+++ +.+
T Consensus       144 ~~~~~~~~~~L~~~-~~~  160 (167)
T 3v31_A          144 ALGYRSVQQVIESH-LLK  160 (167)
T ss_dssp             HHTCHHHHHHHHHH-HHH
T ss_pred             HcCcHHHHHHHHHH-HHH
Confidence            99999999999988 444

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=3.6e-31  Score=227.19  Aligned_cols=176  Identities=17%  Similarity=0.119  Sum_probs=150.8

Q ss_pred             HHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCC
Q 043760            8 LLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD   87 (345)
Q Consensus         8 v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~   87 (345)
                      |+.|++++.+.......+..|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|+++|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            46788888877666556778899999999999999999999999988 88999999999999999999999999999999


Q ss_pred             CCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccC-CCCCCHHHHH--HHcC
Q 043760           88 KCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKD-DYGMTILLLA--VADK  164 (345)
Q Consensus        88 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d-~~g~t~Lh~A--~~~g  164 (345)
                      + +..|..|+||||+|+..|+.+++++|++.|++                        ++.++ ..|+||||+|  +..|
T Consensus        80 ~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~------------------------~~~~~~~~g~tpL~~A~a~~~~  134 (229)
T 2vge_A           80 V-NSPDSHGWTPLHCAASCNDTVICMALVQHGAA------------------------IFATTLSDGATAFEKCDPYREG  134 (229)
T ss_dssp             T-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC------------------------TTCCCSSTTCCTGGGCCTTSTT
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------------cccccCCCCCCHHHHHHHHhcC
Confidence            9 88999999999999999999999999999998                        78776 6999999999  9999


Q ss_pred             CHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccc
Q 043760          165 QIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAIS  217 (345)
Q Consensus       165 ~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~  217 (345)
                      +.+++++|++. |++++.+|..|.||++.++..    .   ..++|++.|++.
T Consensus       135 ~~~~v~~Ll~~-ga~~~~~~~~~~~~l~~~~~~----~---~~~~ll~~ga~~  179 (229)
T 2vge_A          135 YADCATYLADV-EQSMGLMNSGAVYALWDYSAE----F---GDELSFREGESV  179 (229)
T ss_dssp             HHHHHHHHHHH-HHHTTTSGGGEEEESSCBCCS----S---TTBCCBCTTCEE
T ss_pred             hHHHHHHHHHc-CCCcccccCCchHHHHHHhhc----c---ccccCccccccc
Confidence            99999999999 899999999999999865552    1   225678888874

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=2.2e-28  Score=196.31  Aligned_cols=141  Identities=23%  Similarity=0.326  Sum_probs=134.0

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++++.|++.++++.    .+..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|
T Consensus        12 ~g~~~~v~~Ll~~g~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L   86 (153)
T 1awc_B           12 AGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVL   86 (153)
T ss_dssp             HTCHHHHHHHHHHTCCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCC----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcChHHHHHHH
Confidence            589999999999998643    3888999999999999999999999999998 88999999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      +++|+++ +..|..|.||||+|+..|+.+++++|+++|++                        ++.+|..|.||||+|+
T Consensus        87 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------------------------~~~~~~~g~t~l~~A~  141 (153)
T 1awc_B           87 LKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD------------------------VHTQSKFCKTAFDISI  141 (153)
T ss_dssp             HTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHH
T ss_pred             HHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------------ccccCCCCCCHHHHHH
Confidence            9999999 78999999999999999999999999999998                        8899999999999999


Q ss_pred             HcCCHHHHHHh
Q 043760          162 ADKQIEAIKFL  172 (345)
Q Consensus       162 ~~g~~~~v~~L  172 (345)
                      ..|+.+++++|
T Consensus       142 ~~~~~~i~~~L  152 (153)
T 1awc_B          142 DNGNEDLAEIL  152 (153)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HcCCHHHHHHh
Confidence            99999999987

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=2.2e-29  Score=202.96  Aligned_cols=142  Identities=20%  Similarity=0.174  Sum_probs=119.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCc-HHHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRN-PLHLA  103 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-pLh~A  103 (345)
                      +..|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+ .|+.+++++|+++|+++ +..|..|.| |||+|
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDA   85 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence            678999999999999999999999999988 889999999999986 99999999999999999 889999999 99999


Q ss_pred             HHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCcccccc
Q 043760          104 AMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAV  183 (345)
Q Consensus       104 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  183 (345)
                      +..|+.+++++|+++|++                        ++.+|..|+||||+|+..|+.+++++|+++ |++++.+
T Consensus        86 ~~~~~~~~v~~Ll~~ga~------------------------~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~  140 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGAR------------------------LDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGS  140 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCC------------------------SSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C------
T ss_pred             HHCCCHHHHHHHHHcCCC------------------------CcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCcc
Confidence            999999999999999998                        899999999999999999999999999999 9999999


Q ss_pred             CCCCCcHHHHH
Q 043760          184 TANGFTAWDIL  194 (345)
Q Consensus       184 n~~g~T~L~~a  194 (345)
                      |..|.||.+-+
T Consensus       141 ~~~g~t~~~~~  151 (156)
T 1bi7_B          141 NHARIDAAEGP  151 (156)
T ss_dssp             -----------
T ss_pred             CcCcCcccccC
Confidence            99999998744

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=1.8e-29  Score=220.52  Aligned_cols=168  Identities=21%  Similarity=0.227  Sum_probs=142.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHh----cCCCCcccccC----CCCchHHHHHH---HcCCHHHHHHHHhhCCCC-----
Q 043760           25 NCLSETPLHVAALLGHEDFAKEIL----PQKPRIAEELD----SRKSSALHIAS---QKGYVGIVKALLQVIPDK-----   88 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll----~~~~~~~~~~d----~~g~tpLh~A~---~~g~~~iv~~Ll~~~~~~-----   88 (345)
                      +..|+|+||.|+..|+.+.++.|+    +.+.++ +..+    ..|.||||+|+   ..|+.+++++|++.|++.     
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            567999999999999999555444    488877 5444    77999999999   779999999999987542     


Q ss_pred             -----CcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccC-------------
Q 043760           89 -----CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKD-------------  150 (345)
Q Consensus        89 -----~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d-------------  150 (345)
                           ....|..|+||||+|+..|+.+++++|++.|++                        ++.++             
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------------------------~~~~~~~~~~~~~~~~~~  136 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD------------------------VHAQARGRFFQPKDEGGY  136 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCEECCCSSSCCCCS
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC------------------------cCccccccccCccccccc
Confidence                 134556899999999999999999999999998                        56666             


Q ss_pred             -CCCCCHHHHHHHcCCHHHHHHhhh---cCCccccccCCCCCcHHHHHHhcCCCCc-----hhhHHHHHHHcccccc
Q 043760          151 -DYGMTILLLAVADKQIEAIKFLTT---STAIEVNAVTANGFTAWDILAQSKRDIK-----DWDTGELLRRAGAISA  218 (345)
Q Consensus       151 -~~g~t~Lh~A~~~g~~~~v~~Ll~---~~~~~~~~~n~~g~T~L~~a~~~~~~~~-----~~~i~~~L~~~ga~~~  218 (345)
                       ..|.||||+|+..|+.+++++|++   . |++++.+|..|+||||+|+.......     ..+++++|++.|++..
T Consensus       137 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~-ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~  212 (260)
T 3jxi_A          137 FYFGELPLSLAACTNQPHIVHYLTENGHK-QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF  212 (260)
T ss_dssp             CCSCSSHHHHHHHTTCHHHHHHHHHCSSC-CCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhcccc-CCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccc
Confidence             689999999999999999999999   6 99999999999999999997321110     1589999999999873

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=1.2e-28  Score=194.00  Aligned_cols=124  Identities=22%  Similarity=0.259  Sum_probs=79.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCC-CCcHHHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVD-GRNPLHLA  103 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~-g~tpLh~A  103 (345)
                      +..|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+. |+.+++++|+++|+++ +..|.. |.||||+|
T Consensus         9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A   85 (136)
T 1d9s_A            9 GGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPVHDA   85 (136)
T ss_dssp             CCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHHHHH
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHHHHH
Confidence            556666666666666666666666666655 5566666666666666 6666666666666665 555555 66666666


Q ss_pred             HHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhc
Q 043760          104 AMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTS  175 (345)
Q Consensus       104 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  175 (345)
                      +..|+.+++++|++++++                        ++.+|..|.||||+|+..++.+++++|+++
T Consensus        86 ~~~~~~~~v~~Ll~~ga~------------------------~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           86 AREGFLDTLVVLHRAGAR------------------------LDVCDAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             HHHTCHHHHHHHHHTCCC------------------------CCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCC------------------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            666666666666666655                        556666666666666666666666666665

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=4.3e-28  Score=197.02  Aligned_cols=145  Identities=23%  Similarity=0.237  Sum_probs=134.8

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+++.++.|++.++....  ..+..|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|
T Consensus        18 ~g~~~~v~~ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L   94 (165)
T 3twr_A           18 AGDVETVKKLCTVQSVNCR--DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELL   94 (165)
T ss_dssp             HTCHHHHHHHCCTTTTTCC--CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hCCHHHHHHHHHcCCCCcc--ccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHcCcHHHHHHH
Confidence            5899999999997654332  34788999999999999999999999999998 88999999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      +++|+++ +..|..|.||||+|+..|+.+++++|+++|++                        ++.+|..|.||||+|+
T Consensus        95 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------------------------~~~~~~~g~t~l~~a~  149 (165)
T 3twr_A           95 VKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGAD------------------------PTKKNRDGNTPLDLVK  149 (165)
T ss_dssp             HHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCTGGGSC
T ss_pred             HhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------------CcccCCCCCChhHhHh
Confidence            9999999 78999999999999999999999999999998                        8999999999999987


Q ss_pred             HcCCHHHHHHhhhc
Q 043760          162 ADKQIEAIKFLTTS  175 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~  175 (345)
                      . |+.+++++|++.
T Consensus       150 ~-~~~~i~~~L~~~  162 (165)
T 3twr_A          150 D-GDTDIQDLLRGD  162 (165)
T ss_dssp             T-TCHHHHHHHHTC
T ss_pred             c-CChHHHHHHhhc
Confidence            7 999999999988

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=4.5e-28  Score=201.95  Aligned_cols=145  Identities=21%  Similarity=0.254  Sum_probs=137.6

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++++.|++.++++...   +..|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|
T Consensus        45 ~g~~~~v~~Ll~~~~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L  120 (192)
T 2rfm_A           45 LGMENAIDKLVENFDKLEDK---DIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFL  120 (192)
T ss_dssp             HTCGGGHHHHHHHHCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHhccccccc---cccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHH
Confidence            47899999999998876544   888999999999999999999999999998 88999999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      +++|+++ +..|..|.||||+|+..|+.+++++|++.|++                        ++.+|..|.||||+|+
T Consensus       121 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------------------------~~~~~~~g~t~l~~A~  175 (192)
T 2rfm_A          121 LEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGAD------------------------ISARDLTGLTAEASAR  175 (192)
T ss_dssp             HHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------------------TTCBCTTSCBHHHHHH
T ss_pred             HHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------------------------CCCcCCCCCCHHHHHH
Confidence            9999999 88999999999999999999999999999998                        8899999999999999


Q ss_pred             HcCCHHHHHHhhhc
Q 043760          162 ADKQIEAIKFLTTS  175 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~  175 (345)
                      ..|+.+++++|++.
T Consensus       176 ~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          176 IFGRQEVIKIFTEV  189 (192)
T ss_dssp             HTTCHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHhc
Confidence            99999999999987

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=2.3e-28  Score=192.33  Aligned_cols=133  Identities=22%  Similarity=0.256  Sum_probs=126.9

Q ss_pred             CCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCc
Q 043760           52 PRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVG  131 (345)
Q Consensus        52 ~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~  131 (345)
                      +++ +.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+. |+.+++++|++.+++          
T Consensus         3 ~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~----------   69 (136)
T 1d9s_A            3 PGI-HMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE----------   69 (136)
T ss_dssp             CCC-SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC----------
T ss_pred             CCc-cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC----------
Confidence            344 788999999999999999999999999999998 7899999999999999 999999999999998          


Q ss_pred             cHHHHHHhcCCcccccccCCC-CCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHH
Q 043760          132 STEVLLENMGDFELLNAKDDY-GMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELL  210 (345)
Q Consensus       132 ~~~~l~~~~~~~~~~~~~d~~-g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L  210 (345)
                                    ++.+|.. |+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.    .++.+++++|
T Consensus        70 --------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~----~~~~~~~~~L  130 (136)
T 1d9s_A           70 --------------PNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLAEE----QGHRDIARYL  130 (136)
T ss_dssp             --------------SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHT-CCCCCCCSSSSSCHHHHHHH----HTCHHHHHHH
T ss_pred             --------------CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHH----cCCHHHHHHH
Confidence                          8999999 99999999999999999999999 89999999999999999999    7889999999


Q ss_pred             HHcccc
Q 043760          211 RRAGAI  216 (345)
Q Consensus       211 ~~~ga~  216 (345)
                      +++||+
T Consensus       131 l~~Gad  136 (136)
T 1d9s_A          131 HAATGD  136 (136)
T ss_dssp             HHHHCC
T ss_pred             HHcCCC
Confidence            999985

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=1.2e-27  Score=192.46  Aligned_cols=143  Identities=27%  Similarity=0.392  Sum_probs=132.6

Q ss_pred             CCCHHHHHHHHhcCC-ccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHH
Q 043760            2 AGSVNTLLELRQQDP-LILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKA   80 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~-~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~   80 (345)
                      .|+.+.++.|++..+ ++   ...+..|+||||+ +..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++
T Consensus        12 ~g~~~~v~~ll~~~~~~~---~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~   86 (156)
T 1bd8_A           12 RGDVQEVRRLLHRELVHP---DALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKV   86 (156)
T ss_dssp             HTCHHHHHHHHHTTCCCT---TCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             hCCHHHHHHHHHhhCcCc---cccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            589999999999832 32   2348899999999 9999999999999999998 8899999999999999999999999


Q ss_pred             HHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHH
Q 043760           81 LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLA  160 (345)
Q Consensus        81 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A  160 (345)
                      |+++|+++ +..|..|.||||+|+..|+.+++++|++. ++                        ++.+|..|.||||+|
T Consensus        87 Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~------------------------~~~~~~~g~t~l~~A  140 (156)
T 1bd8_A           87 LVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD------------------------LHRRDARGLTPLELA  140 (156)
T ss_dssp             HHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC------------------------TTCCCTTSCCHHHHH
T ss_pred             HHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC------------------------CCCcCCCCCCHHHHH
Confidence            99999999 88999999999999999999999999998 66                        889999999999999


Q ss_pred             HHcCCHHHHHHhhhc
Q 043760          161 VADKQIEAIKFLTTS  175 (345)
Q Consensus       161 ~~~g~~~~v~~Ll~~  175 (345)
                      +..|+.+++++|+++
T Consensus       141 ~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          141 LQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHSCCHHHHHHHHTT
T ss_pred             HHcCcHHHHHHHHhh
Confidence            999999999999975

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=1.1e-28  Score=204.72  Aligned_cols=158  Identities=13%  Similarity=0.044  Sum_probs=140.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCH----HHHHHHHhhCCCCCcCCCCCCCcHHHHH
Q 043760           28 SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYV----GIVKALLQVIPDKCSDTDVDGRNPLHLA  103 (345)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  103 (345)
                      +.++|+.|++.|+.+.++.++..+.+.  ..+..|+||||+|+..|+.    +++++|+++|+++ +.+|..|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            568999999999999999999877543  2237799999999999975    5999999999999 89999999999999


Q ss_pred             HHcCc------HHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCC-CHHHHHHHcC-----CHHHHHH
Q 043760          104 AMRGH------IDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM-TILLLAVADK-----QIEAIKF  171 (345)
Q Consensus       104 ~~~g~------~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~-t~Lh~A~~~g-----~~~~v~~  171 (345)
                      +..|+      .+++++|++.|++                        +|.+|..|+ ||||+|+..+     +.+++++
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gad------------------------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~  138 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGAD------------------------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKL  138 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCC------------------------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCC------------------------CCccCCCcCchHHHHHHHcCCChhhHHHHHHH
Confidence            99987      6889999999999                        999999999 9999999954     4569999


Q ss_pred             hhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccc
Q 043760          172 LTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAI  216 (345)
Q Consensus       172 Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~  216 (345)
                      |++..|++++.+|..|+||||+|+.    .++.+++++|.+...+
T Consensus       139 Ll~~~gad~~~~d~~G~TpL~~A~~----~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          139 IFSQSGLQLLIKDKWGLTALEFVKR----CQKPIALKMMEDYIKK  179 (186)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHT----TTCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCcccCCCCCCHHHHHHH----cCCHHHHHHHHHHHHH
Confidence            9993399999999999999999999    8889999999876543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=2.1e-28  Score=221.25  Aligned_cols=158  Identities=18%  Similarity=0.113  Sum_probs=132.2

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCC---HHHHHHHhcCCCCcccccCCCCchHHHHHHH----cCC
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGH---EDFAKEILPQKPRIAEELDSRKSSALHIASQ----KGY   74 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~---~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~----~g~   74 (345)
                      .|+.++|+.|++.++++...   |..|+||||+|+..|+   .++++.|++.+...++.+|..|+||||+|+.    .|+
T Consensus       141 ~g~~~~v~~Ll~~Gad~n~~---d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~  217 (327)
T 1sw6_A          141 IANLELVKHLVKHGSNRLYG---DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC  217 (327)
T ss_dssp             TTCHHHHHHHHHTTCCTTBC---CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTC
T ss_pred             cCCHHHHHHHHHcCCCCCCc---CCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccccc
Confidence            58999999999999887654   8999999999999998   6777777777633348999999999999999    899


Q ss_pred             HHHHHHHHhh--------------------CCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHH
Q 043760           75 VGIVKALLQV--------------------IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTE  134 (345)
Q Consensus        75 ~~iv~~Ll~~--------------------~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~  134 (345)
                      .+++++|++.                    |+++ +..+..|.||||.|+.      +++|++.  +             
T Consensus       218 ~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~~g~t~L~~a~~------~~~Ll~~--~-------------  275 (327)
T 1sw6_A          218 SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNGERKDSILENLD------LKWIIAN--M-------------  275 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHH--T-------------
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccccccCCChhHHHHH------HHHHHHh--C-------------
Confidence            9999999987                    7788 7889999999999985      8888887  3             


Q ss_pred             HHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHh
Q 043760          135 VLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ  196 (345)
Q Consensus       135 ~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~  196 (345)
                                 ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+.
T Consensus       276 -----------~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          276 -----------LNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             -----------TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTCC
T ss_pred             -----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHh
Confidence                       788999999999999999999999999999 99999999999999999987

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1.8e-28  Score=211.82  Aligned_cols=164  Identities=21%  Similarity=0.134  Sum_probs=131.3

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.+.++.|++++.++..    +..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|
T Consensus        15 ~~~~~~~~~ll~~g~~~~~----~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~L   89 (239)
T 1ycs_B           15 TNLRKTGSERIAHGMRVKF----NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFL   89 (239)
T ss_dssp             --------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             hhhHHHHHHHhccCCCccc----CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4778899999999987642    678999999999999999999999999987 89999999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCC-CHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM-TILLLA  160 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~-t~Lh~A  160 (345)
                      +++|+++ +..|..|+||||+|+..|+.+++++|+++|++                        ++.++..|. ||||+|
T Consensus        90 l~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~------------------------~~~~~~~~~~t~l~~a  144 (239)
T 1ycs_B           90 VQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA------------------------VFAMTYSDMQTAADKC  144 (239)
T ss_dssp             HHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCSSSCCCHHHHC
T ss_pred             HHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------------cceecCCCCcchHHHH
Confidence            9999999 89999999999999999999999999999998                        888887777 999999


Q ss_pred             --HHcCCHHHHHHhhhcCCcccccc---------CCCCCcHHHHHHh
Q 043760          161 --VADKQIEAIKFLTTSTAIEVNAV---------TANGFTAWDILAQ  196 (345)
Q Consensus       161 --~~~g~~~~v~~Ll~~~~~~~~~~---------n~~g~T~L~~a~~  196 (345)
                        +..|+.+++++|++. +++++..         +..+.++++++..
T Consensus       145 ~~~~~g~~~~~~~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~  190 (239)
T 1ycs_B          145 EEMEEGYTQCSQFLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPMK  190 (239)
T ss_dssp             CSSSTTCCCHHHHHHHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBC
T ss_pred             HHhhhccHHHHHHHHHh-hhcccccccceEEEEeccCCCCCCccccc
Confidence              788999999999999 8888776         5556777766655

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=5.3e-28  Score=213.37  Aligned_cols=163  Identities=20%  Similarity=0.210  Sum_probs=150.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCC-cccccCCCCchHHHHHHHcCCHHHHHHHHhhCC-CCCcCCCCCCCcHHHHHH-
Q 043760           28 SETPLHVAALLGHEDFAKEILPQKPR-IAEELDSRKSSALHIASQKGYVGIVKALLQVIP-DKCSDTDVDGRNPLHLAA-  104 (345)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~-~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~-~~~~~~d~~g~tpLh~A~-  104 (345)
                      +++++|.|+..|+.+.++.|++.+.+ .++.+|..|+||||+|+..|+.+++++|++.|+ ++ +..+..|.||||+|+ 
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~a~~  154 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV-DKQNRAGYSPIMLTAL  154 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHGGG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-CCCCCCCCCHHHHHHH
Confidence            56788999999999999999987655 238889999999999999999999999999998 55 899999999999999 


Q ss_pred             ----HcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccc
Q 043760          105 ----MRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEV  180 (345)
Q Consensus       105 ----~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  180 (345)
                          ..++.+++++|++.+..                        .+..|..|+||||+|+..|+.+++++|++. |+++
T Consensus       155 ~~~~~~~~~~~v~~Ll~~g~~------------------------~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~  209 (276)
T 4hbd_A          155 ATLKTQDDIETVLQLFRLGNI------------------------NAKASQAGQTALMLAVSHGRVDVVKALLAC-EADV  209 (276)
T ss_dssp             CCCCSHHHHHHHHHHHHHSCT------------------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred             HHhhhhhhHHHHHHHHHcCCC------------------------ccccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCC
Confidence                67899999999999977                        778889999999999999999999999999 9999


Q ss_pred             cccCCCCCcHHHHHHhcCCCCchhhHHHHHHH-cccccccc
Q 043760          181 NAVTANGFTAWDILAQSKRDIKDWDTGELLRR-AGAISAKD  220 (345)
Q Consensus       181 ~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~-~ga~~~~~  220 (345)
                      |.+|..|+||||+|+.    .++.+++++|++ .|++.+..
T Consensus       210 n~~d~~G~TpLh~A~~----~g~~~iv~~Ll~~~gad~~~~  246 (276)
T 4hbd_A          210 NVQDDDGSTALMCACE----HGHKEIAGLLLAVPSCDISLT  246 (276)
T ss_dssp             TCCCTTSCCHHHHHHH----HTCHHHHHHHHTSTTCCTTCC
T ss_pred             CCCCCCCCCHHHHHHH----CCCHHHHHHHHhcCCCCCcCc
Confidence            9999999999999999    888999999999 89988653

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.8e-30  Score=221.70  Aligned_cols=173  Identities=16%  Similarity=0.021  Sum_probs=152.6

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++|+.|++.++++...   |..|+||||+||..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|
T Consensus        31 ~g~~~~v~~Ll~~g~~~~~~---d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~L  106 (229)
T 2vge_A           31 TGELEVVQQAVKEMNDPSQP---NEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMAL  106 (229)
T ss_dssp             HTCHHHHHHHHHHSSCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhcCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            48999999999999886543   889999999999999999999999999998 89999999999999999999999999


Q ss_pred             HhhCCCCCcCCC-CCCCcHHHHH--HHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHH
Q 043760           82 LQVIPDKCSDTD-VDGRNPLHLA--AMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILL  158 (345)
Q Consensus        82 l~~~~~~~~~~d-~~g~tpLh~A--~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh  158 (345)
                      +++|+++ +..+ ..|+||||+|  +..|+.+++++|++.|++                        ++.+|..|.||+|
T Consensus       107 l~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~------------------------~~~~~~~~~~~l~  161 (229)
T 2vge_A          107 VQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQS------------------------MGLMNSGAVYALW  161 (229)
T ss_dssp             HTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH------------------------TTTSGGGEEEESS
T ss_pred             HHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC------------------------cccccCCchHHHH
Confidence            9999999 5554 6999999999  999999999999999988                        7888888999999


Q ss_pred             HHHHcCCHHHHHHhhhcCCcc--ccccCCCCCcHHHHHHhcCCCCchhhHHHHHH
Q 043760          159 LAVADKQIEAIKFLTTSTAIE--VNAVTANGFTAWDILAQSKRDIKDWDTGELLR  211 (345)
Q Consensus       159 ~A~~~g~~~~v~~Ll~~~~~~--~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~  211 (345)
                      .++...   ..++|++. |++  ++.+|..|+||||+|+.    .++.++++.++
T Consensus       162 ~~~~~~---~~~~ll~~-ga~~~~~~~d~~G~TpL~~A~~----~g~~~~v~~~~  208 (229)
T 2vge_A          162 DYSAEF---GDELSFRE-GESVTVLRRDGPEETDWWWAAL----HGQEGYVPRNY  208 (229)
T ss_dssp             CBCCSS---TTBCCBCT-TCEEEEEESSCTTCSSEEEEEE----TTEEEEEEGGG
T ss_pred             HHhhcc---ccccCccc-cccccccccCCCcccHHHHHHH----cCCcceeehhh
Confidence            655544   33677777 777  78899999999999999    77777665433

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=1.2e-26  Score=179.25  Aligned_cols=122  Identities=39%  Similarity=0.587  Sum_probs=69.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcC
Q 043760           28 SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG  107 (345)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  107 (345)
                      |+||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcC
Confidence            555555555555555555555555554 555555555555555555555555555555555 455555555555555555


Q ss_pred             cHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhc
Q 043760          108 HIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTS  175 (345)
Q Consensus       108 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  175 (345)
                      +.+++++|++++++                        ++.+|..|.||||+|+..|+.+++++|+++
T Consensus        80 ~~~~~~~Ll~~g~~------------------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  123 (126)
T 1n0r_A           80 HLEVVKLLLEAGAD------------------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEA  123 (126)
T ss_dssp             CHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCC------------------------CcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            55555555555554                        455555555555555555555555555555

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=2e-26  Score=178.01  Aligned_cols=126  Identities=38%  Similarity=0.545  Sum_probs=121.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhc
Q 043760           61 RKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENM  140 (345)
Q Consensus        61 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~  140 (345)
                      +|+||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.+++                   
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------------------   60 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-------------------   60 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------------------
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-------------------
Confidence            5899999999999999999999999998 78899999999999999999999999999988                   


Q ss_pred             CCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccc
Q 043760          141 GDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAI  216 (345)
Q Consensus       141 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~  216 (345)
                           ++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+.    .++.+++++|++.||+
T Consensus        61 -----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           61 -----VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAAR----NGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             -----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHTCC
T ss_pred             -----CcccCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCcccCCCCCCHHHHHHH----cCcHHHHHHHHHcCCC
Confidence                 888999999999999999999999999999 99999999999999999999    8899999999999985

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=1e-26  Score=182.91  Aligned_cols=125  Identities=26%  Similarity=0.388  Sum_probs=119.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  104 (345)
                      ...+.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAA   88 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHH
Confidence            566899999999999999999999999998 889999999999999999999999999999998 789999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhc
Q 043760          105 MRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTS  175 (345)
Q Consensus       105 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  175 (345)
                      ..|+.+++++|++++++                        ++.+|..|+||||+|+..|+.+++++|++.
T Consensus        89 ~~~~~~~v~~Ll~~g~~------------------------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGAD------------------------VNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHcCCC------------------------CcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            99999999999999988                        889999999999999999999999999986

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=1.2e-26  Score=182.43  Aligned_cols=127  Identities=31%  Similarity=0.352  Sum_probs=119.7

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHH
Q 043760           58 LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLL  137 (345)
Q Consensus        58 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~  137 (345)
                      ....+.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+++                
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------   72 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD----------------   72 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----------------
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------------
Confidence            4567889999999999999999999999998 78999999999999999999999999999988                


Q ss_pred             HhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcc
Q 043760          138 ENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAG  214 (345)
Q Consensus       138 ~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~g  214 (345)
                              ++.+|..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.    .++.+++++|++.|
T Consensus        73 --------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpl~~A~~----~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           73 --------VNAVDAIGFTPLHLAAFIGHLEIAEVLLKH-GADVNAQDKFGKTAFDISIG----NGNEDLAEILQKLN  136 (136)
T ss_dssp             --------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHC-
T ss_pred             --------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcCcCCCCCCHHHHHHH----CCCHHHHHHHHHcC
Confidence                    889999999999999999999999999999 99999999999999999999    88999999999876

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=1.9e-27  Score=197.25  Aligned_cols=152  Identities=15%  Similarity=0.080  Sum_probs=134.3

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCH----HHHHHHhcCCCCcccccCCCCchHHHHHHHcCC---
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHE----DFAKEILPQKPRIAEELDSRKSSALHIASQKGY---   74 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---   74 (345)
                      .|+++.++.++..+.....    +..|+||||+|+.+|+.    +++++|+++|+++ +.+|..|+||||+|+..|+   
T Consensus        16 ~g~~~~~~~l~~~~~~~~~----~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a~~~~~~~~   90 (186)
T 3t8k_A           16 LGTYEDFLELFEKGYEDKE----SVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPLFQGGGNDI   90 (186)
T ss_dssp             HSCHHHHHHHHHHSSSCHH----HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHHHHHCTTCH
T ss_pred             cCCHHHHHHHHhcCccccc----ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCcch
Confidence            5899999999998854221    36799999999999985    5999999999998 9999999999999999987   


Q ss_pred             ---HHHHHHHHhhCCCCCcCCCCCCC-cHHHHHHHcC-----cHHHHHHHHh-cCCCcccccccCCccHHHHHHhcCCcc
Q 043760           75 ---VGIVKALLQVIPDKCSDTDVDGR-NPLHLAAMRG-----HIDVLEELVR-AKPDAASTRLIWVGSTEVLLENMGDFE  144 (345)
Q Consensus        75 ---~~iv~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~g-----~~~iv~~Ll~-~~~~~~~~~~~~~~~~~~l~~~~~~~~  144 (345)
                         .+++++|+++|+++ +.+|..|. ||||+|+..+     +.+++++|++ .|++                       
T Consensus        91 ~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-----------------------  146 (186)
T 3t8k_A           91 TGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-----------------------  146 (186)
T ss_dssp             HHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-----------------------
T ss_pred             hhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-----------------------
Confidence               68899999999999 89999999 9999999944     4679999999 8998                       


Q ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccC
Q 043760          145 LLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVT  184 (345)
Q Consensus       145 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n  184 (345)
                       ++.+|..|+||||+|++.|+.+++++|++. ..+.+.++
T Consensus       147 -~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~-~~~~~~~~  184 (186)
T 3t8k_A          147 -LLIKDKWGLTALEFVKRCQKPIALKMMEDY-IKKYNLKE  184 (186)
T ss_dssp             -TTCCCTTSCCHHHHHHTTTCHHHHHHHHHH-HHHHTCCC
T ss_pred             -CcccCCCCCCHHHHHHHcCCHHHHHHHHHH-HHHHhccc
Confidence             899999999999999999999999999987 44555554

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=7.7e-27  Score=188.00  Aligned_cols=133  Identities=20%  Similarity=0.228  Sum_probs=119.9

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHH
Q 043760           56 EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEV  135 (345)
Q Consensus        56 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~  135 (345)
                      ...+..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+ .|+.+++++|++.+++              
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~--------------   69 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE--------------   69 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC--------------
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC--------------
Confidence            456788999999999999999999999999998 789999999999985 9999999999999988              


Q ss_pred             HHHhcCCcccccccCCCCCC-HHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcc
Q 043760          136 LLENMGDFELLNAKDDYGMT-ILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAG  214 (345)
Q Consensus       136 l~~~~~~~~~~~~~d~~g~t-~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~g  214 (345)
                                ++.+|..|+| |||+|+..|+.+++++|+++ |++++.+|..|+||||+|+.    .++.+++++|++.|
T Consensus        70 ----------~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~----~~~~~~v~~Ll~~g  134 (156)
T 1bi7_B           70 ----------PNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEE----LGHRDVARYLRAAA  134 (156)
T ss_dssp             ----------CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHH----HTCHHHHHHHSSCC
T ss_pred             ----------CCCcCCCCCcHHHHHHHHCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHH----hCHHHHHHHHHHcC
Confidence                      8999999999 99999999999999999999 99999999999999999999    78899999999999


Q ss_pred             ccccc
Q 043760          215 AISAK  219 (345)
Q Consensus       215 a~~~~  219 (345)
                      ++...
T Consensus       135 a~~~~  139 (156)
T 1bi7_B          135 GGTRG  139 (156)
T ss_dssp             -----
T ss_pred             CCCCc
Confidence            98865

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1.4e-26  Score=182.20  Aligned_cols=95  Identities=28%  Similarity=0.336  Sum_probs=45.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  104 (345)
                      |..|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHHH
Confidence            444445555555545555555444444444 444444444444444444444444444444444 344444444444444


Q ss_pred             HcCcHHHHHHHHhcCCC
Q 043760          105 MRGHIDVLEELVRAKPD  121 (345)
Q Consensus       105 ~~g~~~iv~~Ll~~~~~  121 (345)
                      ..|+.+++++|+++|++
T Consensus        85 ~~~~~~~v~~Ll~~ga~  101 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGAS  101 (137)
T ss_dssp             HTTCHHHHHHHHHTTCC
T ss_pred             HcCCHHHHHHHHHcCCC
Confidence            44444444444444444

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=8.4e-26  Score=195.63  Aligned_cols=145  Identities=24%  Similarity=0.192  Sum_probs=131.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCC-CCCCcHHHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTD-VDGRNPLHLA  103 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh~A  103 (345)
                      +..|.||||+|+..|+.+++++|++ +.++ +.+|..|+||||+|+..|+.+++++|+++|+++ +..+ ..|.||||+|
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence            4578999999999999999999999 8887 889999999999999999999999999999999 5666 8899999999


Q ss_pred             HHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCcccccc
Q 043760          104 AMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAV  183 (345)
Q Consensus       104 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  183 (345)
                      +..|+.+++++|+++|++                        ++.+|..|+||||+|+..++                  
T Consensus       119 ~~~g~~~~v~~Ll~~ga~------------------------~~~~d~~g~t~l~~A~~~~~------------------  156 (244)
T 3ui2_A          119 AGYVRPEVVEALVELGAD------------------------IEVEDERGLTALELAREILK------------------  156 (244)
T ss_dssp             HHTTCHHHHHHHHHTTCC------------------------TTCCCTTCCCHHHHHHHHHT------------------
T ss_pred             HHcCCHHHHHHHHHCCCC------------------------CCCCCCCCCcHHHHHHHHHh------------------
Confidence            999999999999999998                        89999999999999986321                  


Q ss_pred             CCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccc
Q 043760          184 TANGFTAWDILAQSKRDIKDWDTGELLRRAGAISA  218 (345)
Q Consensus       184 n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~  218 (345)
                      +..+.||||+|+.    .++.+++++|.+.+.+..
T Consensus       157 ~~~~~~~l~~a~~----~g~~~iv~~L~~~~~~~~  187 (244)
T 3ui2_A          157 TTPKGNPMQFGRR----IGLEKVINVLEGQVFEYA  187 (244)
T ss_dssp             TCCCSSHHHHHHH----HHHHHHHHHHHHHHEEEE
T ss_pred             ccCCCCHHHHHHH----cChHHHHHHHHHhccccc
Confidence            2568999999999    889999999999877543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=1.1e-25  Score=186.10  Aligned_cols=140  Identities=24%  Similarity=0.210  Sum_probs=127.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCC-CCCCcHHHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTD-VDGRNPLHLA  103 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh~A  103 (345)
                      +..|+||||+|+..|+.+++++|++ +.++ +.+|..|+||||+|+..|+.+++++|+++|+++ +..+ ..|+||||+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence            4578999999999999999999999 8777 889999999999999999999999999999999 5666 8999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCcccccc
Q 043760          104 AMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAV  183 (345)
Q Consensus       104 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  183 (345)
                      +..|+.+++++|+++|++                        ++.+|..|+||||+|++.++.                 
T Consensus       118 ~~~~~~~~v~~Ll~~ga~------------------------~~~~d~~g~tpl~~A~~~~~~-----------------  156 (183)
T 3deo_A          118 AGYVRPEVVEALVELGAD------------------------IEVEDERGLTALELAREILKT-----------------  156 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCC------------------------TTCCCTTSCCHHHHHHHHHHT-----------------
T ss_pred             HhcCcHHHHHHHHHcCCC------------------------CcCCCCCCCCHHHHHHHhccC-----------------
Confidence            999999999999999998                        899999999999999875321                 


Q ss_pred             CCCCCcHHHHHHhcCCCCchhhHHHHHHHc
Q 043760          184 TANGFTAWDILAQSKRDIKDWDTGELLRRA  213 (345)
Q Consensus       184 n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~  213 (345)
                       ..+.++|++|+.    .+..+++++|.++
T Consensus       157 -~~~~~~l~~a~~----~~~~~i~~~L~~~  181 (183)
T 3deo_A          157 -TPKGNPMQFGRR----IGLEKVINVLEGQ  181 (183)
T ss_dssp             -CCCCSHHHHHHH----HHHHHHHHHHHTC
T ss_pred             -cccccHHHHHHH----cCHHHHHHHHHHh
Confidence             456899999999    8899999999754

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=3.1e-26  Score=180.26  Aligned_cols=129  Identities=29%  Similarity=0.272  Sum_probs=114.1

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHH
Q 043760           57 ELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVL  136 (345)
Q Consensus        57 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l  136 (345)
                      .+|..|+||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.+++               
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------   68 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL---------------   68 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---------------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---------------
Confidence            46899999999999999999999999999999 78999999999999999999999999999988               


Q ss_pred             HHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhc--CCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcc
Q 043760          137 LENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTS--TAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAG  214 (345)
Q Consensus       137 ~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~--~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~g  214 (345)
                               ++.+|..|+||||+|+..|+.+++++|++.  .   ++.+|..|+||||+|+.    .+..+++++|.+.+
T Consensus        69 ---------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~----~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           69 ---------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS---RNAVNIFGLRPVDYTDD----ESMKSLLLLPEKNE  132 (137)
T ss_dssp             ---------TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGCCC----HHHHHHHSCC----
T ss_pred             ---------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhh----ccHHHHHhhccccc
Confidence                     889999999999999999999999999974  3   36788999999999998    78889999888877


Q ss_pred             ccc
Q 043760          215 AIS  217 (345)
Q Consensus       215 a~~  217 (345)
                      ...
T Consensus       133 ~s~  135 (137)
T 3c5r_A          133 SSS  135 (137)
T ss_dssp             ---
T ss_pred             cCC
Confidence            643

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=5.8e-26  Score=193.60  Aligned_cols=132  Identities=19%  Similarity=0.212  Sum_probs=82.7

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhc-CCCcccccccCCccHHH
Q 043760           57 ELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRA-KPDAASTRLIWVGSTEV  135 (345)
Q Consensus        57 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~  135 (345)
                      ..+..|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|++. +++              
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~--------------  132 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE--------------  132 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC--------------
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC--------------
Confidence            34556666777777767777777776666666 56666667777777777777777777666 555              


Q ss_pred             HHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccc
Q 043760          136 LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGA  215 (345)
Q Consensus       136 l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga  215 (345)
                                ++.+|..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.    .+..++++.|++.|+
T Consensus       133 ----------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~----~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          133 ----------LNQQNKLGDTALHAAAWKGYADIVQLLLAK-GARTDLRNIEKKLAFDMATN----AACASLLKKKQGTDA  197 (222)
T ss_dssp             ----------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCS----HHHHHHHC-------
T ss_pred             ----------ccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCCHHHHhcc----hhHHHHHHHHhccch
Confidence                      666666677777777777777777777766 66677777777777777666    566666666666666


Q ss_pred             ccc
Q 043760          216 ISA  218 (345)
Q Consensus       216 ~~~  218 (345)
                      ...
T Consensus       198 ~~~  200 (222)
T 3ehr_A          198 VRT  200 (222)
T ss_dssp             ---
T ss_pred             hhh
Confidence            553

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.92  E-value=3.4e-27  Score=216.25  Aligned_cols=158  Identities=16%  Similarity=0.139  Sum_probs=132.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCc--ccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCC--cCCCCCCCcHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRI--AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC--SDTDVDGRNPL  100 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~--~~~d~~g~tpL  100 (345)
                      +.+++||||+||..|+.+++++|++.+...  ....+..|.||||+||..|+.++|++|+++|+++.  +..+.+ .|||
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL  167 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF  167 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence            344679999999999999999999998722  12345678899999999999999999999997621  223333 9999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccc--cCCCCCCHHHHHH-HcCCHHHHHHhhhcCC
Q 043760          101 HLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNA--KDDYGMTILLLAV-ADKQIEAIKFLTTSTA  177 (345)
Q Consensus       101 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~d~~g~t~Lh~A~-~~g~~~~v~~Ll~~~~  177 (345)
                      |+|+..|+.+++++|+++|++                        ++.  .|..|.||||+|+ ..|+.+++++|++. |
T Consensus       168 h~Aa~~G~~eiv~~Ll~~ga~------------------------~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~-g  222 (376)
T 2aja_A          168 RLAAENGHLHVLNRLCELAPT------------------------EATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-P  222 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGG------------------------GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-H
T ss_pred             HHHHHCCCHHHHHHHHHcCCc------------------------cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC-C
Confidence            999999999999999999988                        555  7788999999999 99999999999997 5


Q ss_pred             ccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          178 IEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       178 ~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      +       .|.||||+|+.    .++.+++++|++.|++...
T Consensus       223 a-------~~~taL~~Aa~----~g~~evv~lL~~~ga~~~~  253 (376)
T 2aja_A          223 V-------MLAYAEIHEFE----YGEKYVNPFIARHVNRLKE  253 (376)
T ss_dssp             H-------HHHHHHHCTTT----TTTTTHHHHHHHHHHHHHH
T ss_pred             C-------ccchHHHHHHH----CCCHHHHHHHHhcCccccc
Confidence            3       28899999999    8899999999999997743

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=4e-25  Score=197.14  Aligned_cols=136  Identities=17%  Similarity=0.147  Sum_probs=94.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCcccc------cCCCCchHHHHHHHc---CCHHHHHHHHhhCCCCCcCCCCCCCc
Q 043760           28 SETPLHVAALLGHEDFAKEILPQKPRIAEE------LDSRKSSALHIASQK---GYVGIVKALLQVIPDKCSDTDVDGRN   98 (345)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t   98 (345)
                      +.++||.|+..|+.+.++.|++.++++ +.      .+..|.||||+|+..   |+.+++++|+++|+++ +..|..|+|
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~T  228 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT  228 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcc-cccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCC
Confidence            345677777777777777777777766 43      466777777777775   6777777777777776 666777777


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCc
Q 043760           99 PLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAI  178 (345)
Q Consensus        99 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  178 (345)
                      |||+|+..|+.+++++|++.|++                        ++.+|..|.||||+|+..|+.+++++|++. |+
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~gad------------------------~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~-ga  283 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGRAL------------------------VGTVNEAGETALDIARKKHHKECEELLEQA-QA  283 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC------------------------CSCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-cC
Confidence            77777777777777777777776                        667777777777777777777777777776 44


Q ss_pred             cccccCCCCCcHHHHHHh
Q 043760          179 EVNAVTANGFTAWDILAQ  196 (345)
Q Consensus       179 ~~~~~n~~g~T~L~~a~~  196 (345)
                      +      .|.||||+|+.
T Consensus       284 ~------~g~tpLh~A~~  295 (301)
T 2b0o_E          284 G------TFAFPLHVDYS  295 (301)
T ss_dssp             H------TTSSCCC----
T ss_pred             C------CCCChhHHHHh
Confidence            3      46677777766

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=5.5e-25  Score=169.77  Aligned_cols=112  Identities=29%  Similarity=0.362  Sum_probs=76.4

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHH
Q 043760           59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLE  138 (345)
Q Consensus        59 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~  138 (345)
                      +..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|++.+++                 
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------------   65 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-----------------   65 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-----------------
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----------------
Confidence            345666777777777777777777776666 56666677777777777777777777776666                 


Q ss_pred             hcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHh
Q 043760          139 NMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQ  196 (345)
Q Consensus       139 ~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~  196 (345)
                             ++.+|..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|..
T Consensus        66 -------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           66 -------INAPDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             -------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCC
T ss_pred             -------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHhCC
Confidence                   666667777777777777777777777776 66777777777777777644

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=3e-25  Score=171.28  Aligned_cols=114  Identities=20%  Similarity=0.223  Sum_probs=105.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  104 (345)
                      +..|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHH
Confidence            567899999999999999999999999988 889999999999999999999999999999998 889999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcC
Q 043760          105 MRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADK  164 (345)
Q Consensus       105 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g  164 (345)
                      ..|+.+++++|++++++                        ++.+|..|.||||+|+..+
T Consensus        82 ~~~~~~~v~~Ll~~ga~------------------------~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGAD------------------------KTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHCCCHH
T ss_pred             HcCCHHHHHHHHHcCCC------------------------CCCcCCCCCCHHHHhCCHH
Confidence            99999999999999998                        8899999999999995443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=3.8e-25  Score=188.52  Aligned_cols=137  Identities=21%  Similarity=0.221  Sum_probs=115.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhh-CCCCCcCCCCCCCcHHHHH
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV-IPDKCSDTDVDGRNPLHLA  103 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A  103 (345)
                      +..|.||||+||..|+.+++++|++.+.++ +.+|..|+||||+||..|+.+++++|++. |+++ +..|..|.||||+|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAA  147 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHH
Confidence            456799999999999999999999999998 88999999999999999999999999999 8888 89999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCcccccc
Q 043760          104 AMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAV  183 (345)
Q Consensus       104 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  183 (345)
                      +..|+.+++++|+++|++                        ++.+|..|.||||+|+..++.++++.|++. +++.+..
T Consensus       148 ~~~~~~~~v~~Ll~~ga~------------------------~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~  202 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGAR------------------------TDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLS  202 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCC------------------------SCCCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred             HHcCCHHHHHHHHHcCCC------------------------CccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhcc
Confidence            999999999999999998                        899999999999999999999999999999 8788877


Q ss_pred             CCCCC
Q 043760          184 TANGF  188 (345)
Q Consensus       184 n~~g~  188 (345)
                      |.+|.
T Consensus       203 ~~~~~  207 (222)
T 3ehr_A          203 NAEDY  207 (222)
T ss_dssp             -----
T ss_pred             chhhh
Confidence            76653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.91  E-value=5.4e-27  Score=214.95  Aligned_cols=203  Identities=16%  Similarity=0.169  Sum_probs=138.1

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCc--ccccCCCCchHHHHHHHcCCHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRI--AEELDSRKSSALHIASQKGYVGIVK   79 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~g~~~iv~   79 (345)
                      .|+.++|+.|++.+.........+..|.||||+||..|+.++|++|++++++.  .+..+.+ .||||+||..|+.++|+
T Consensus       102 ~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~  180 (376)
T 2aja_A          102 TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLN  180 (376)
T ss_dssp             HCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHH
Confidence            58999999999998743223344677899999999999999999999999752  1222223 99999999999999999


Q ss_pred             HHHhhCCCCCcC--CCCCCCcHHHHHH-HcCcHHHHHHHHhcCCCccccc-----ccCCccHHHHHHhcCCcccccccCC
Q 043760           80 ALLQVIPDKCSD--TDVDGRNPLHLAA-MRGHIDVLEELVRAKPDAASTR-----LIWVGSTEVLLENMGDFELLNAKDD  151 (345)
Q Consensus        80 ~Ll~~~~~~~~~--~d~~g~tpLh~A~-~~g~~~iv~~Ll~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~d~  151 (345)
                      +|+++|+++ +.  .|..|.||||+|+ ..|+.++|++|++.|+......     ......+++|++.+..   ++..|.
T Consensus       181 ~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~~~taL~~Aa~~g~~evv~lL~~~ga~---~~~~~~  256 (376)
T 2aja_A          181 RLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR---LKEMHD  256 (376)
T ss_dssp             HHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHH---HHHHHT
T ss_pred             HHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCccchHHHHHHHCCCHHHHHHHHhcCcc---cccccH
Confidence            999999997 44  7888999999999 9999999999998654311000     0011125666665433   222211


Q ss_pred             CCCCHHHHHHHcC---------------------------CHHHHHHhhhcCCccc----cccCCCCCcHHHHHHhcCCC
Q 043760          152 YGMTILLLAVADK---------------------------QIEAIKFLTTSTAIEV----NAVTANGFTAWDILAQSKRD  200 (345)
Q Consensus       152 ~g~t~Lh~A~~~g---------------------------~~~~v~~Ll~~~~~~~----~~~n~~g~T~L~~a~~~~~~  200 (345)
                          +++.|+.+|                           ..+.+++|++.++++.    ....+.+.||||+|+.    
T Consensus       257 ----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~----  328 (376)
T 2aja_A          257 ----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR----  328 (376)
T ss_dssp             ----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHH----
T ss_pred             ----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHH----
Confidence                222222222                           2345555554422211    2233456789999999    


Q ss_pred             CchhhHHHHHHHccccc
Q 043760          201 IKDWDTGELLRRAGAIS  217 (345)
Q Consensus       201 ~~~~~i~~~L~~~ga~~  217 (345)
                      .++.+++++|++.|...
T Consensus       329 ~g~~e~v~lLl~~~~v~  345 (376)
T 2aja_A          329 LGNQGACALLLSIPSVL  345 (376)
T ss_dssp             HTCTTHHHHHTTSHHHH
T ss_pred             cCcHHHHHHHHcChHHH
Confidence            78889999999877543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=2.9e-26  Score=189.64  Aligned_cols=150  Identities=21%  Similarity=0.204  Sum_probs=124.1

Q ss_pred             HHcCCHHHHHHHhcCCCCc----------ccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHH
Q 043760           36 ALLGHEDFAKEILPQKPRI----------AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM  105 (345)
Q Consensus        36 a~~g~~~~v~~Ll~~~~~~----------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  105 (345)
                      ++.|..+++++|++.+...          ....+..|.||||+|+..|+.+++++|++ +.++ +..|..|+||||+|+.
T Consensus         8 a~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~   85 (183)
T 3deo_A            8 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAG   85 (183)
T ss_dssp             EEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHH
T ss_pred             HHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHH
Confidence            3445555666666542211          01235689999999999999999999999 8888 7899999999999999


Q ss_pred             cCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccC-CCCCCHHHHHHHcCCHHHHHHhhhcCCccccccC
Q 043760          106 RGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKD-DYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVT  184 (345)
Q Consensus       106 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n  184 (345)
                      .|+.+++++|++++++                        ++.+| ..|+||||+|+..|+.+++++|+++ |++++.+|
T Consensus        86 ~~~~~~v~~Ll~~ga~------------------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d  140 (183)
T 3deo_A           86 LGSDKCVRLLAEAGAD------------------------LDHRDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVED  140 (183)
T ss_dssp             HTCHHHHHHHHHTTCC------------------------TTCCCSSSSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCC
T ss_pred             cCCHHHHHHHHHcCCC------------------------CCcCCCCCCCCHHHHHHhcCcHHHHHHHHHc-CCCCcCCC
Confidence            9999999999999998                        88888 8899999999999999999999999 89999999


Q ss_pred             CCCCcHHHHHHhcCCCCchhhHHHHHHHcccc
Q 043760          185 ANGFTAWDILAQSKRDIKDWDTGELLRRAGAI  216 (345)
Q Consensus       185 ~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~  216 (345)
                      ..|+||||+|+.    .++.+..+.++..++.
T Consensus       141 ~~g~tpl~~A~~----~~~~~~~~~~l~~a~~  168 (183)
T 3deo_A          141 ERGLTALELARE----ILKTTPKGNPMQFGRR  168 (183)
T ss_dssp             TTSCCHHHHHHH----HHHTCCCCSHHHHHHH
T ss_pred             CCCCCHHHHHHH----hccCcccccHHHHHHH
Confidence            999999999998    4444444445555543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=1.2e-22  Score=178.99  Aligned_cols=165  Identities=19%  Similarity=0.191  Sum_probs=140.1

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHhcCCCC-------cc-----------------------cccCCCCchHHHHHHHcC
Q 043760           24 VNCLSETPLHVAALLGHEDFAKEILPQKPR-------IA-----------------------EELDSRKSSALHIASQKG   73 (345)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~-------~~-----------------------~~~d~~g~tpLh~A~~~g   73 (345)
                      .|..+.+.|+.+...|+..+.+++...-+.       ..                       ...+....++|+.|+..|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            367788999999999987766655432111       10                       000011246899999999


Q ss_pred             CHHHHHHHHhhCCCCC-----cCCCCCCCcHHHHHHHc---CcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCccc
Q 043760           74 YVGIVKALLQVIPDKC-----SDTDVDGRNPLHLAAMR---GHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFEL  145 (345)
Q Consensus        74 ~~~iv~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  145 (345)
                      +.+.++.+++.|+++.     +..+..|.||||+|+..   |+.+++++|+++|++                        
T Consensus       142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~------------------------  197 (278)
T 1dcq_A          142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN------------------------  197 (278)
T ss_dssp             CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC------------------------
T ss_pred             ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC------------------------
Confidence            9999999999999862     44588999999999999   899999999999998                        


Q ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccc
Q 043760          146 LNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAIS  217 (345)
Q Consensus       146 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~  217 (345)
                      +|.+|..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.    .++.+++++|++.|+..
T Consensus       198 in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          198 LDKQTGKGSTALHYCCLTDNAECLKLLLRG-KASIEIANESGETPLDIAKR----LKHEHCEELLTQALSGR  264 (278)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHTTC
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCccCCCCCHHHHHHH----cCCHHHHHHHHHcCCCC
Confidence            899999999999999999999999999998 99999999999999999999    88899999999999965

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=4.1e-25  Score=191.27  Aligned_cols=140  Identities=20%  Similarity=0.185  Sum_probs=121.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHc
Q 043760           27 LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR  106 (345)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  106 (345)
                      .+.+++.+++..|+.+.+..+...+.++    +..|.||||+|+..|+.+++++|++ +.++ +..|..|+||||+|+..
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~   87 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGL   87 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGGSCHHH----HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHH
T ss_pred             CCccHHHHHHHcCCCccccccccccccc----ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHC
Confidence            3555666666666666555544444332    5679999999999999999999999 8888 78999999999999999


Q ss_pred             CcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccC-CCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCC
Q 043760          107 GHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKD-DYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTA  185 (345)
Q Consensus       107 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~  185 (345)
                      |+.+++++|+++|++                        ++.+| ..|+||||+|+..|+.+++++|+++ |++++.+|.
T Consensus        88 g~~~~v~~Ll~~ga~------------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~  142 (244)
T 3ui2_A           88 GSDKCVRLLAEAGAD------------------------LDHRDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDE  142 (244)
T ss_dssp             TCHHHHHHHHHTTCC------------------------TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT
T ss_pred             CCHHHHHHHHHcCCC------------------------CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCC
Confidence            999999999999998                        88888 7899999999999999999999999 999999999


Q ss_pred             CCCcHHHHHHhc
Q 043760          186 NGFTAWDILAQS  197 (345)
Q Consensus       186 ~g~T~L~~a~~~  197 (345)
                      .|+||||+|+..
T Consensus       143 ~g~t~l~~A~~~  154 (244)
T 3ui2_A          143 RGLTALELAREI  154 (244)
T ss_dssp             TCCCHHHHHHHH
T ss_pred             CCCcHHHHHHHH
Confidence            999999999973

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.89  E-value=3.3e-23  Score=189.16  Aligned_cols=143  Identities=21%  Similarity=0.235  Sum_probs=93.4

Q ss_pred             CCcHHHHHHHc-CCHHHHHHHhcCCCCcccccC--CCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 043760           28 SETPLHVAALL-GHEDFAKEILPQKPRIAEELD--SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (345)
Q Consensus        28 g~t~Lh~Aa~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  104 (345)
                      +.|+||.|+.. |+.+++++|++.++++ +..+  ..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~  276 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHAT  276 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            45677777777 7777777777777776 6666  67777777777777777777777777777 677777777777777


Q ss_pred             HcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcC--Cccccc
Q 043760          105 MRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTST--AIEVNA  182 (345)
Q Consensus       105 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~~  182 (345)
                      ..|+.+++++|+++|++                        ++.+|..|.||||+|+..|+.+++++|+..+  ..+...
T Consensus       277 ~~g~~~~v~~LL~~Gad------------------------~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~  332 (368)
T 3jue_A          277 ILGHTGLACLFLKRGAD------------------------LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQ  332 (368)
T ss_dssp             HHTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------
T ss_pred             HcCcHHHHHHHHHCcCC------------------------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc
Confidence            77777777777777777                        6777777777777777777777777777652  123344


Q ss_pred             cCCCCCcHHHHHHh
Q 043760          183 VTANGFTAWDILAQ  196 (345)
Q Consensus       183 ~n~~g~T~L~~a~~  196 (345)
                      .+..+.|+++++..
T Consensus       333 ~~~~~~t~l~i~~~  346 (368)
T 3jue_A          333 GQAGDETYLDIFRD  346 (368)
T ss_dssp             --------------
T ss_pred             cCCCCCCHHHHHHH
Confidence            55666677776655

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=1.6e-22  Score=147.87  Aligned_cols=93  Identities=37%  Similarity=0.558  Sum_probs=88.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHc
Q 043760           27 LSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR  106 (345)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  106 (345)
                      +|+||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence            4899999999999999999999999998 999999999999999999999999999999999 88999999999999999


Q ss_pred             CcHHHHHHHHhcCCC
Q 043760          107 GHIDVLEELVRAKPD  121 (345)
Q Consensus       107 g~~~iv~~Ll~~~~~  121 (345)
                      |+.+++++|++.|++
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999998864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=5.3e-22  Score=174.94  Aligned_cols=124  Identities=19%  Similarity=0.164  Sum_probs=116.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCCCCc-----ccccCCCCchHHHHHHHc---CCHHHHHHHHhhCCCCCcCCCCCCCcHH
Q 043760           29 ETPLHVAALLGHEDFAKEILPQKPRI-----AEELDSRKSSALHIASQK---GYVGIVKALLQVIPDKCSDTDVDGRNPL  100 (345)
Q Consensus        29 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~tpL  100 (345)
                      .++|+.|+..|+.+.++.+++.+.++     ++..|..|.||||+|+..   |+.+++++|+++|+++ +..|..|.|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHH
Confidence            46899999999999999999999885     244588999999999999   8999999999999999 88999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCc
Q 043760          101 HLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAI  178 (345)
Q Consensus       101 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  178 (345)
                      |+|+..|+.+++++|++.|++                        ++.+|..|.||||+|+..|+.+++++|++. |+
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad------------------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga  262 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKAS------------------------IEIANESGETPLDIAKRLKHEHCEELLTQA-LS  262 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HT
T ss_pred             HHHHHcCCHHHHHHHHHcCCC------------------------CCCccCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence            999999999999999999998                        899999999999999999999999999999 54

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=5.1e-22  Score=145.21  Aligned_cols=89  Identities=40%  Similarity=0.626  Sum_probs=56.7

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcC
Q 043760           62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMG  141 (345)
Q Consensus        62 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~  141 (345)
                      |+||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.|++                    
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~--------------------   60 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--------------------   60 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--------------------
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------------------
Confidence            566666666666666666666666665 55666666666666666666666666666665                    


Q ss_pred             CcccccccCCCCCCHHHHHHHcCCHHHHHHhhhc
Q 043760          142 DFELLNAKDDYGMTILLLAVADKQIEAIKFLTTS  175 (345)
Q Consensus       142 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  175 (345)
                          ++.+|..|+||||+|+..|+.+++++|++.
T Consensus        61 ----~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~   90 (93)
T 1n0q_A           61 ----VNAKDKNGRTPLHLAARNGHLEVVKLLLEA   90 (93)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ----CCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence                556666666666666666666666666665

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=1.5e-22  Score=153.96  Aligned_cols=107  Identities=31%  Similarity=0.374  Sum_probs=69.1

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHH
Q 043760           58 LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLL  137 (345)
Q Consensus        58 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~  137 (345)
                      +|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+++                
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------------   67 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD----------------   67 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC----------------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC----------------
Confidence            4566666666666666666666666666665 55666666666666666666666666666665                


Q ss_pred             HhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcH
Q 043760          138 ENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA  190 (345)
Q Consensus       138 ~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~  190 (345)
                              ++.+|..|.||||+|+..|+.+++++|+++ |+++|.++..|.||
T Consensus        68 --------~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           68 --------VNARSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSWGSSHH  111 (115)
T ss_dssp             --------TTCCCTTCCCTTHHHHTTTCHHHHHHHHTT-SSSHHHHSCCCC--
T ss_pred             --------CcccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCcCCcccccc
Confidence                    566666666666666666666666666666 66666666666665

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=4.6e-22  Score=181.58  Aligned_cols=130  Identities=19%  Similarity=0.116  Sum_probs=120.0

Q ss_pred             CCCCchHHHHHHHc-CCHHHHHHHHhhCCCCCcCCC--CCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHH
Q 043760           59 DSRKSSALHIASQK-GYVGIVKALLQVIPDKCSDTD--VDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEV  135 (345)
Q Consensus        59 d~~g~tpLh~A~~~-g~~~iv~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~  135 (345)
                      +..+.|+||.|+.. |+.+++++|+++|+++ +..+  ..|.||||+|+..|+.+++++|+++|++              
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad--------------  260 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN--------------  260 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--------------
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC--------------
Confidence            44567899999999 9999999999999999 6777  8999999999999999999999999998              


Q ss_pred             HHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccc
Q 043760          136 LLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGA  215 (345)
Q Consensus       136 l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga  215 (345)
                                +|.+|..|+||||+|+..|+.+++++||++ |++++.+|..|.||||+|+.    .++.+++++|+..|.
T Consensus       261 ----------vn~~d~~G~TpLh~A~~~g~~~~v~~LL~~-Gad~~~~d~~G~TpL~~A~~----~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          261 ----------VNQADSAGRGPLHHATILGHTGLACLFLKR-GADLGARDSEGRDPLTIAME----TANADIVTLLRLAKM  325 (368)
T ss_dssp             ----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHC
T ss_pred             ----------CCCCCCCCCCHHHHHHHcCcHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHH----CCCHHHHHHHHHcCC
Confidence                      899999999999999999999999999999 99999999999999999999    889999999999886


Q ss_pred             ccc
Q 043760          216 ISA  218 (345)
Q Consensus       216 ~~~  218 (345)
                      ...
T Consensus       326 ~~~  328 (368)
T 3jue_A          326 REA  328 (368)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=4.7e-22  Score=177.26  Aligned_cols=126  Identities=24%  Similarity=0.191  Sum_probs=118.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhCCCCCcC------CCCCCCcHHHHHHHc---CcHHHHHHHHhcCCCcccccccCCcc
Q 043760           62 KSSALHIASQKGYVGIVKALLQVIPDKCSD------TDVDGRNPLHLAAMR---GHIDVLEELVRAKPDAASTRLIWVGS  132 (345)
Q Consensus        62 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~  132 (345)
                      +.++||.|+..|+.+.++.|++.|+++ +.      .+..|.||||+|+..   |+.+++++|+++|++           
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-----------  218 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-----------  218 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-----------
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcc-cccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-----------
Confidence            457799999999999999999999998 44      689999999999997   899999999999998           


Q ss_pred             HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHH
Q 043760          133 TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRR  212 (345)
Q Consensus       133 ~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~  212 (345)
                                   ++.+|..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.    .++.+++++|++
T Consensus       219 -------------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~----~~~~~iv~~Ll~  280 (301)
T 2b0o_E          219 -------------LDAKAADGNTALHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARK----KHHKECEELLEQ  280 (301)
T ss_dssp             -------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCCSCCCTTSCCHHHHHHH----HTCHHHHHHHHH
T ss_pred             -------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHH
Confidence                         899999999999999999999999999998 99999999999999999999    788999999999


Q ss_pred             ccccc
Q 043760          213 AGAIS  217 (345)
Q Consensus       213 ~ga~~  217 (345)
                      .|++.
T Consensus       281 ~ga~~  285 (301)
T 2b0o_E          281 AQAGT  285 (301)
T ss_dssp             HHHHT
T ss_pred             hcCCC
Confidence            99974

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=4.5e-22  Score=151.40  Aligned_cols=107  Identities=30%  Similarity=0.373  Sum_probs=100.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHH
Q 043760           24 VNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLA  103 (345)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  103 (345)
                      +|..|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLA   82 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence            4889999999999999999999999999997 889999999999999999999999999999998 78999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCH
Q 043760          104 AMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTI  156 (345)
Q Consensus       104 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~  156 (345)
                      +..|+.+++++|+++|++                        +|.++..|.+|
T Consensus        83 ~~~~~~~~~~~Ll~~ga~------------------------~n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGAD------------------------VNARSWGSSHH  111 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSS------------------------HHHHSCCCC--
T ss_pred             HHCCCHHHHHHHHHcCCC------------------------CCcCCcccccc
Confidence            999999999999999999                        78888888876

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=2.2e-19  Score=135.41  Aligned_cols=91  Identities=24%  Similarity=0.331  Sum_probs=85.2

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHH
Q 043760           23 TVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHL  102 (345)
Q Consensus        23 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~  102 (345)
                      ..+.+|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~   96 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDI   96 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHH
Confidence            34888999999999999999999999999988 888999999999999999999999999999998 8899999999999


Q ss_pred             HHHcCcHHHHHHH
Q 043760          103 AAMRGHIDVLEEL  115 (345)
Q Consensus       103 A~~~g~~~iv~~L  115 (345)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9999999999886

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=5.1e-19  Score=133.41  Aligned_cols=94  Identities=28%  Similarity=0.423  Sum_probs=85.2

Q ss_pred             cccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccH
Q 043760           54 IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGST  133 (345)
Q Consensus        54 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~  133 (345)
                      .....|.+|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++            
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~------------   82 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD------------   82 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------
Confidence            34667899999999999999999999999999998 78899999999999999999999999999988            


Q ss_pred             HHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHh
Q 043760          134 EVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFL  172 (345)
Q Consensus       134 ~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~L  172 (345)
                                  ++.+|..|+||||+|+..|+.+++++|
T Consensus        83 ------------~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           83 ------------VXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             ------------TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ------------ccccccCCCcHHHHHHHcCCHHHHHHh
Confidence                        899999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	345
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-13
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.001
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.003
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	8e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 1e-19
 Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 17/201 (8%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLHVA+ +GH    K +L +        + +  + LH+A++ G+  + K LLQ      
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV- 59

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDA---------ASTRLIWVGSTEVLLENM 140
           +    D + PLH AA  GH ++++ L+    +                  G  E +L  +
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 141 GDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRD 200
                       G T L +A    ++   + L    A   NA   NG T   +       
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA-HPNAAGKNGLTPLHVAVHH--- 175

Query: 201 IKDWDTGELLRRAGA-ISAKD 220
             + D  +LL   G    +  
Sbjct: 176 -NNLDIVKLLLPRGGSPHSPA 195

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (172), Expect = 3e-14
 Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 16/192 (8%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPLH+AA     +     L Q    A     +  + LH+A+Q+G+  +V  L       
Sbjct: 199 YTPLHIAAKQNQVEV-ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL-LSKQAN 256

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDA---------ASTRLIWVGSTEVLLEN 139
            +  +  G  PLHL A  GH+ V + L++                      G+ +++   
Sbjct: 257 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 316

Query: 140 MGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKR 199
           +     +NAK   G + L  A      + +  L  + A   N V+++G T   I  +   
Sbjct: 317 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA-SPNEVSSDGTTPLAIAKRLGY 375

Query: 200 DIKDWDTGELLR 211
                   ++L+
Sbjct: 376 I----SVTDVLK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 3e-13
 Identities = 45/202 (22%), Positives = 69/202 (34%), Gaps = 58/202 (28%)

Query: 24  VNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
            N   ETPLH+AA  GH + AK +L  K ++         + LH A++ G+  +VK LL+
Sbjct: 29  SNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLE 87

Query: 84  VIPDKC--------------------------------SDTDVDGRNPLHLAAMRGHIDV 111
              +                                  +     G  PLH+AA  G + V
Sbjct: 88  NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV 147

Query: 112 LEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKF 171
            E L+                              NA    G+T L +AV    ++ +K 
Sbjct: 148 AELLLERDAH------------------------PNAAGKNGLTPLHVAVHHNNLDIVKL 183

Query: 172 LTTSTAIEVNAVTANGFTAWDI 193
           L        ++   NG+T   I
Sbjct: 184 LLPRGG-SPHSPAWNGYTPLHI 204

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 6e-08
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 24  VNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
              L  +PLH AA  GH D    +L        E+ S  ++ L IA + GY+ +   +L+
Sbjct: 326 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTD-VLK 383

Query: 84  VIPDKCSDTDVDGRNPL 100
           V+ D+ S   V  ++ +
Sbjct: 384 VVTDETSFVLVSDKHRM 400

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 3e-15
 Identities = 54/252 (21%), Positives = 84/252 (33%), Gaps = 66/252 (26%)

Query: 29  ETPLHVAALLGHEDFAKEILP--------------------------------QKPRIAE 56
            TPLH A  +  ED  + +L                                  K     
Sbjct: 40  WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99

Query: 57  ELDSRKSSALHIASQKGYVGIVKALLQVIPDK---------CSDTDVDGRNPLHLAAMRG 107
           E D    +A   A+  G V  +K L +   +                 G   L  AA +G
Sbjct: 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159

Query: 108 HIDVLEELVR---AKPDAASTRLIWVGST--------------EVLLENMGDFELLNAKD 150
           H++VL+ L+    A  +A                          +LL++  D   +N + 
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRG 216

Query: 151 DYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELL 210
           + G T L+LAV  K +  ++ L     IE+N   ++G TA  +  + K         ELL
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK----KIAELL 272

Query: 211 RRAGA-ISAKDL 221
            + GA     DL
Sbjct: 273 CKRGASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 9e-10
 Identities = 40/212 (18%), Positives = 65/212 (30%), Gaps = 21/212 (9%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              L  A      D  +++L     +  + +    + LH A Q     IV+ LL+   D 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD---------------AASTRLIWVGST 133
                        LAA+ G + +L+  +    D               A   ++  +   
Sbjct: 66  VLRKKNGATPF-LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 134 EVLLENMG----DFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFT 189
                N+       E        G T L+ A     +E +K L      +VNA    G  
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 190 AWDILAQSKRDIKDWDTGELLRRAGA-ISAKD 220
           A      S  D        LL   GA ++ + 
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRG 216

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 25/79 (31%)

Query: 94  VDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDD-Y 152
           V+  + L  A     +D++++L+    +                        +N +++  
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGAN------------------------VNFQEEEG 38

Query: 153 GMTILLLAVADKQIEAIKF 171
           G T L  AV   + + ++ 
Sbjct: 39  GWTPLHNAVQMSREDIVEL 57

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 3e-13
 Identities = 41/217 (18%), Positives = 70/217 (32%), Gaps = 42/217 (19%)

Query: 26  CLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGI-------- 77
           C+S   +   A  G  +  KE +     +A   D    +ALH A   G+  I        
Sbjct: 1   CVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 60

Query: 78  ------------------------VKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLE 113
                                   +   L     + +  + +G  PLH AA +   ++  
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 114 ELVR--AKPDAAST-------RLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADK 164
            L+   A PDA          R    G+ +++   +      N +D  G T L LA  ++
Sbjct: 121 MLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEE 180

Query: 165 QIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDI 201
           ++E  K L +  A  +        T   +       I
Sbjct: 181 RVEEAKLLVSQGA-SIYIENKEEKTPLQVAKGGLGLI 216

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 4e-07
 Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 27/149 (18%)

Query: 24  VNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
           VN    TPLH AA     + A  +L       +  D  +++A+H A+ KG + ++  LL 
Sbjct: 99  VNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLY 157

Query: 84  VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDF 143
                    D +G  PLHLA     ++  + LV                           
Sbjct: 158 YKASTNI-QDTEGNTPLHLACDEERVEEAKLLVSQGAS---------------------- 194

Query: 144 ELLNAKDDYGMTILLLAVADKQIEAIKFL 172
             +  ++    T L +A        +K +
Sbjct: 195 --IYIENKEEKTPLQVA-KGGLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 8e-06
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 25  NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
           +    T +H AA  G+      IL          D+  ++ LH+A  +  V   K L+  
Sbjct: 133 DHYEATAMHRAAAKGNLKM-IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ 191

Query: 85  IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELV 116
                   + + + PL +A   G   +L+ +V
Sbjct: 192 GASIYI-ENKEEKTPLQVAK-GGLGLILKRMV 221

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 65.7 bits (159), Expect = 1e-12
 Identities = 24/181 (13%), Positives = 42/181 (23%), Gaps = 26/181 (14%)

Query: 18  ILERPTVNCLSETPLHVAALLGHEDFAKEI----------LPQKPRIAEELDSRKSSALH 67
            L   T++      + +      E   + +            Q    A +   +      
Sbjct: 36  ELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICF 95

Query: 68  IASQKGYVGIVKALLQVIPDKCS--DTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST 125
           +A+  G    +  L  ++           +      LAA  GH+ VL  L    P     
Sbjct: 96  VAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA 155

Query: 126 RLIWVGST--------------EVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKF 171
            +                      L E          + +        AV       I F
Sbjct: 156 MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINF 215

Query: 172 L 172
           L
Sbjct: 216 L 216

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 53.7 bits (128), Expect = 1e-08
 Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 11/92 (11%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
                ++   G  D   +    +              L   + +  +  ++ LL +   K
Sbjct: 253 HDAFKLSNPDGVFDLVTKSECLQGFYMLR-------NLIRRNDEVLLDDIRFLLSIPGIK 305

Query: 89  C----SDTDVDGRNPLHLAAMRGHIDVLEELV 116
                +    D    L LA   G+      L+
Sbjct: 306 ALAPTATIPGDANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 48.7 bits (115), Expect = 4e-07
 Identities = 23/170 (13%), Positives = 42/170 (24%), Gaps = 21/170 (12%)

Query: 11  LRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIAS 70
           L +  P                  A   GH +    +L     +A         A     
Sbjct: 180 LCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY--------AEIHEF 231

Query: 71  QKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIW- 129
           + G   +   + +       +   +  +   L+   G  D++ +    +       LI  
Sbjct: 232 EYGEKYVNPFIAR-----HVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRR 286

Query: 130 -----VGSTEVLLENMGDFELL--NAKDDYGMTILLLAVADKQIEAIKFL 172
                +     LL   G   L            +L LA+      A   L
Sbjct: 287 NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 4/59 (6%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRI----AEELDSRKSSALHIASQKGYVGIVKALLQV 84
             L         D  + +L             +    +  L +A + G  G    LL +
Sbjct: 281 RNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 339

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 63.6 bits (153), Expect = 4e-12
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 25  NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
                T LH AA + +    K ++ +K    ++ D    + + +A+Q+G + +V  L+Q 
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 243

Query: 85  IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAK 119
                   D        LA    H ++++   R +
Sbjct: 244 GAS-VEAVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.5 bits (132), Expect = 2e-09
 Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 24/114 (21%)

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRA 118
             +  +ALH A+Q   + IVK L+          D DG+ P+ LAA  G I+V+  L++ 
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 243

Query: 119 KPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFL 172
                                      + A D    T   LA A+     +   
Sbjct: 244 GAS------------------------VEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.5 bits (106), Expect = 3e-06
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 10/90 (11%)

Query: 29  ETPLHVA-ALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
           E+P+ +     G     + I  +   I +   +R  + LH  +        + L+     
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNR--TVLHWIASNSSAEKSEDLIVHEAK 58

Query: 88  KCSD-------TDVDGRNPLHLAAMRGHID 110
           +C          D D   PL LA +     
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.5 bits (106), Expect = 4e-06
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 19/92 (20%)

Query: 66  LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAST 125
           LH  +  G   I + + +   +         R  LH  A     +  E+L+  +      
Sbjct: 6   LHTEA-AGSYAITEPITRESVNIIDPRH--NRTVLHWIASNSSAEKSEDLIVHEAKE--- 59

Query: 126 RLIWVGSTEVLLENMGDFELLNAKDDYGMTIL 157
                      +    D   +NA D    T L
Sbjct: 60  ----------CIAAGAD---VNAMDCDENTPL 78

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 149 KDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGE 208
           +D+ G T ++LA  + +IE + +L    A  V AV A   TA  +   +       +  +
Sbjct: 217 QDEDGKTPIMLAAQEGRIEVVMYLIQQGA-SVEAVDATDHTARQLAQANNHH----NIVD 271

Query: 209 LLRRA 213
           +  R 
Sbjct: 272 IFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 35/103 (33%)

Query: 98  NPLHLA-AMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDD-YGMT 155
           +P+ L     G   + E + R                          E +N  D  +  T
Sbjct: 2   SPIKLHTEAAGSYAITEPITR--------------------------ESVNIIDPRHNRT 35

Query: 156 ILLLAVADKQIEAIKFLTTSTAIE-------VNAVTANGFTAW 191
           +L    ++   E  + L    A E       VNA+  +  T  
Sbjct: 36  VLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL 78

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.2 bits (147), Expect = 3e-11
 Identities = 33/191 (17%), Positives = 54/191 (28%), Gaps = 30/191 (15%)

Query: 30  TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGY---VGIVKALLQVIP 86
           TPLH    + + +  K ++          D+   S L  A +       G  +ALL  + 
Sbjct: 109 TPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 167

Query: 87  DKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGST------------- 133
                 D   R  LH   +   +       +   D     ++   +              
Sbjct: 168 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP 227

Query: 134 ------------EVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVN 181
                       E L        +LNA+D  G T L +A     I  +  L    A +  
Sbjct: 228 NDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA-DPF 286

Query: 182 AVTANGFTAWD 192
               +G    D
Sbjct: 287 IANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.9 bits (115), Expect = 3e-07
 Identities = 13/111 (11%), Positives = 32/111 (28%)

Query: 11  LRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIAS 70
           ++     ++         E  L        ++    +         E  S      H++ 
Sbjct: 22  MKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF 81

Query: 71  QKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
                 +  A      +     D  G  PLH      ++++++ LV+   +
Sbjct: 82  DSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN 132

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.5 bits (114), Expect = 4e-07
 Identities = 20/153 (13%), Positives = 49/153 (32%), Gaps = 38/153 (24%)

Query: 23  TVNCLSETPLHVAALLGH------------EDFAKEILPQKPRIAEELDSRKSSALHIAS 70
             + ++ T LH   +               +     I+ ++ R  +   + K S  +  +
Sbjct: 172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 231

Query: 71  QKGYVGIVKALLQ--VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLI 128
            +    I++ L    +I +  +  D +G   L++AA  G+I +++ L+    D       
Sbjct: 232 GERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD------- 284

Query: 129 WVGSTEVLLENMGDFELLNAKDDYGMTILLLAV 161
                                +  G+  +    
Sbjct: 285 -----------------PFIANKSGLRPVDFGA 300

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.3 bits (129), Expect = 4e-09
 Identities = 25/165 (15%), Positives = 48/165 (29%), Gaps = 14/165 (8%)

Query: 29  ETPLHVAALLGHEDFAKEILPQK--PRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
           +T LH+A +  HE F   +L         +  +    +ALH+A+  G    V+ L     
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 87  DKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELL 146
                         HLA           L++ +P           +++  L         
Sbjct: 70  GVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPS------HPRDASDTYLTQS-----Q 117

Query: 147 NAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAW 191
           +   D       +          +       +++ A   +G T  
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 1e-07
 Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 21/69 (30%)

Query: 93  DVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDY 152
             DG   LHLA +  H   L                     + LL      E L+ ++D 
Sbjct: 6   TEDGDTALHLAVIHQHEPFL---------------------DFLLGFSAGHEYLDLQNDL 44

Query: 153 GMTILLLAV 161
           G T L LA 
Sbjct: 45  GQTALHLAA 53

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (111), Expect = 7e-07
 Identities = 46/239 (19%), Positives = 72/239 (30%), Gaps = 32/239 (13%)

Query: 5   VNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSS 64
           ++ LL        +  +   N L +T LH+AA+LG     +++           +    +
Sbjct: 25  LDFLLGFSAGHEYLDLQ---NDLGQTALHLAAILGEASTVEKL-YAAGAGVLVAERGGHT 80

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDT---------DVDGRNPLHLAAMRGHIDVLEEL 115
           ALH+A +         LLQ  P    D          D         AA+    +   E 
Sbjct: 81  ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140

Query: 116 VRAKPDA--------------ASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV 161
                D                   +I   +  V L      +L   +   G T L LAV
Sbjct: 141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200

Query: 162 ADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKD 220
             +    ++ L  + A +  A    G T                   LLR  GA   +D
Sbjct: 201 EAQAASVLELLLKAGA-DPTARMYGGRTPLGSALLRPNP----ILARLLRAHGAPEPED 254

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 14/44 (31%), Positives = 17/44 (38%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGH 108
            LH A  +     V+ LL   P      D DGR PLH +     
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 3e-06
 Identities = 11/46 (23%), Positives = 17/46 (36%)

Query: 30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYV 75
           PLH A +       +E+L  KP +  + D      LH +      
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 4e-06
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 3/98 (3%)

Query: 25  NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
           +  ++ PLH AA +G     + +           D +  + L  A  +G+      L++ 
Sbjct: 135 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 194

Query: 85  IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDA 122
              +    D  G     +A    +  V +  +    DA
Sbjct: 195 YGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVDA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 23/64 (35%)

Query: 99  PLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILL 158
           PLH A M      ++EL+ +KP                        LL  KD  G   L 
Sbjct: 3   PLHQACMENEFFKVQELLHSKPS-----------------------LLLQKDQDGRIPLH 39

Query: 159 LAVA 162
            +V+
Sbjct: 40  WSVS 43

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.4 bits (124), Expect = 2e-08
 Identities = 30/133 (22%), Positives = 45/133 (33%), Gaps = 27/133 (20%)

Query: 40  HEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNP 99
               A++ L               +ALH+A+ KGY  ++K L+Q   D       DG  P
Sbjct: 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY-DGWTP 235

Query: 100 LHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLL 159
           LH AA  G  +    LV    D                        + A +  G T   +
Sbjct: 236 LHAAAHWGKEEACRILVENLCD------------------------MEAVNKVGQTAFDV 271

Query: 160 AVAD--KQIEAIK 170
           A  D    +E ++
Sbjct: 272 ADEDILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 7e-05
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 33  HVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDT 92
            +   +G E   +  + ++ +   + D    +    A   G    V  LL+   D     
Sbjct: 13  QLKRWIGSETDLEPPVVKRKKTKVKFDD--GAVFLAACSSGDTEEVLRLLERGADINY-A 69

Query: 93  DVDGRNPLHLAAMRGHIDV 111
           +VDG   LH A +  ++D+
Sbjct: 70  NVDGLTALHQACIDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 25/110 (22%)

Query: 92  TDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDD 151
               G   LH+AA +G+ +VL+ L++A+ D                        +N KD 
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYD------------------------VNIKDY 230

Query: 152 YGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDI 201
            G T L  A    + EA + L  +   ++ AV   G TA+D+  +     
Sbjct: 231 DGWTPLHAAAHWGKEEACRILVENLC-DMEAVNKVGQTAFDVADEDILGY 279

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 36/237 (15%), Positives = 65/237 (27%), Gaps = 42/237 (17%)

Query: 20  ERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVK 79
           ++  V          A   G  +    +L +   I    +    +ALH A     V +VK
Sbjct: 32  KKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVK 90

Query: 80  AL--------------------------------LQVIPDKCSDTDVDGRNPLHLAAMRG 107
            L                                L          + +G  PL +A    
Sbjct: 91  FLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA 150

Query: 108 HIDVLE---ELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADK 164
             ++L+          +AA      +   +                  G T L +A A  
Sbjct: 151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG 210

Query: 165 QIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGA-ISAKD 220
             E +K L  +   +VN    +G+T     A   ++    +   +L      + A +
Sbjct: 211 YTEVLKLLIQARY-DVNIKDYDGWTPLHAAAHWGKE----EACRILVENLCDMEAVN 262

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 36  ALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVD 95
           A+  +     ++L Q            SSALH AS +G + +V+ L++   D  S  +  
Sbjct: 151 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCH 209

Query: 96  GRNPLHLAAMRGHIDVL 112
              PL +A  R  ID+L
Sbjct: 210 NDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 20/66 (30%)

Query: 95  DGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM 154
           DG  PLH+A ++G++  +  LV                  +  +   +   L+  ++   
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLV-----------------NLFQQGGRE---LDIYNNLRQ 41

Query: 155 TILLLA 160
           T L LA
Sbjct: 42  TPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 9e-06
 Identities = 29/146 (19%), Positives = 55/146 (37%), Gaps = 25/146 (17%)

Query: 25  NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
           N    T LHVA     ++  + +L +   I         S L  A +   + +V+ LL  
Sbjct: 107 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ-LLLQ 165

Query: 85  IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFE 144
                +     G + LH A+ RG + ++  LVR+  D                       
Sbjct: 166 HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD----------------------- 202

Query: 145 LLNAKDDYGMTILLLAVADKQIEAIK 170
             + K+ +  T L++A + + I+ ++
Sbjct: 203 -SSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 9e-06
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 64  SALHIASQKGYVGIVKALLQVIPDKCSD---TDVDGRNPLHLAAMRGH 108
           + LHIA  +G +  V  L+ +      +    +   + PLHLA +   
Sbjct: 5   TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 31/222 (13%), Positives = 63/222 (28%), Gaps = 54/222 (24%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEEL---DSRKSSALHIASQ-------------- 71
           +TPLH+A + G+      ++    +   EL   ++ + + LH+A                
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 72  ----------------------KGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI 109
                                    +  +              + DG   LH+A      
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 123

Query: 110 DVLEELVRAKPDAASTRLI------------WVGSTEVLLENMGDFELLNAKDDYGMTIL 157
           + ++ L+    D  +  +                S   LL   G     NA+   G + L
Sbjct: 124 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV--NAQMYSGSSAL 181

Query: 158 LLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKR 199
             A     +  ++ L  S A + +    +  T   +    + 
Sbjct: 182 HSASGRGLLPLVRTLVRSGA-DSSLKNCHNDTPLMVARSRRV 222

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 7e-07
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 31  PLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCS 90
            LH+A++ G+    + ++     +  +      +ALH+A       +V  LL+   D  +
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VN 172

Query: 91  DTDVDGRNPLHLAAMRGHIDVLEELVRAKPD 121
                G +P  L   R    + ++L +   +
Sbjct: 173 RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 20/66 (30%)

Query: 95  DGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGM 154
           DG + LHLA +     +  E++R                  +  ++     LN +++   
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQ-----------------VKGDLAF---LNFQNNLQQ 40

Query: 155 TILLLA 160
           T L LA
Sbjct: 41  TPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 64  SALHIASQKGYVGIVKALLQVIPDKCSD---TDVDGRNPLHLAAMRGH 108
           S LH+A       +   +++ +    +     +   + PLHLA +   
Sbjct: 4   SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 8e-04
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            T LH+A  L + D    +L     +   +  +  S   +   +    I + L Q+  + 
Sbjct: 146 RTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 204

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 30/205 (14%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 29  ETPLHVAALLGHEDFAKEI---LPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVI 85
           ++ LH+A +   +    E+   +          ++ + + LH+A       I +ALL   
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 86  PDKCSDTDVDGRNPLHL--------------AAMRGHIDVLEELVRAKPDAASTRLIWVG 131
            D                             +    H+  + +                G
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 132 STE-VLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTA 190
               V L      ++   +   G T L LAV  +  + +  L    A +VN VT  G++ 
Sbjct: 123 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA-DVNRVTYQGYSP 181

Query: 191 WDILAQSKRDIKDWDTGELLRRAGA 215
           + +              + L +   
Sbjct: 182 YQLTWGRPST----RIQQQLGQLTL 202

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 4e-06
 Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 20/140 (14%)

Query: 63  SSALHIASQKGYVGIVKALLQVI--------PDKCSDTDVDGRNPLHLAAM---RGHIDV 111
           ++ LH   +      +  LLQ              ++        LHLA     R  + +
Sbjct: 4   AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 63

Query: 112 LEELVRAKPDAASTRLIWVGSTEVLLENMGDFELL---------NAKDDYGMTILLLAVA 162
           ++ LV+   +          +            L             ++ G T L +A  
Sbjct: 64  VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 123

Query: 163 DKQIEAIKFLTTSTAIEVNA 182
            K     + LT + +   N+
Sbjct: 124 LKHEHCEELLTQALSGRFNS 143

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 17/130 (13%), Positives = 34/130 (26%), Gaps = 4/130 (3%)

Query: 2   AGSVNTLLELRQQDPLILERPTVNCLSE---TPLHVAALLGHEDFAKEILPQKPRIAEEL 58
              +  LL+       + E+  +    E   T LH+A           +           
Sbjct: 16  TRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD 75

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSD-TDVDGRNPLHLAAMRGHIDVLEELVR 117
                 +  +             L +      +  +  G  PL +A    H    E L +
Sbjct: 76  KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 135

Query: 118 AKPDAASTRL 127
           A     ++ +
Sbjct: 136 ALSGRFNSHV 145

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 29  ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +T LH AA + + +    +        +  D +  + L +A+++G     KALL    ++
Sbjct: 124 KTALHWAAAVNNTEAVNIL-LMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR 182

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL 115
              TD   R P  +A+ R H D++  L
Sbjct: 183 -EITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 77  IVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
           ++  LL    +  +  D  G   LHLAA     D  + L
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.9 bits (94), Expect = 9e-05
 Identities = 47/186 (25%), Positives = 71/186 (38%), Gaps = 11/186 (5%)

Query: 23  TVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALL 82
           T++   ET LH+AA     D AK  L      A   D+   + LH A     +G+ + LL
Sbjct: 18  TMDKTGETSLHLAARFARADAAK-RLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILL 76

Query: 83  QVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPD---------AASTRLIWVGST 133
           +      +    DG  PL LAA      ++E+L+ A  D          A      V +T
Sbjct: 77  RNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNT 136

Query: 134 EVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDI 193
           E +   +      +A+DD   T L LA  +   EA K L  + A              D+
Sbjct: 137 EAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA-NREITDHMDRLPRDV 195

Query: 194 LAQSKR 199
            ++   
Sbjct: 196 ASERLH 201

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 2e-04
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 66  LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
           LH A++  +  +V+ L++   D         +    ++   G+ D+ E L
Sbjct: 104 LHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 6e-04
 Identities = 5/28 (17%), Positives = 10/28 (35%)

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELV 116
               +  G     LA + G  +V+  + 
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 8e-04
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 98  NPLHLAAMRGHIDVLEELVRAKPD 121
           N L  AA RG ++ L  L++   +
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVN 26

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 6e-04
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 92  TDVDGRNPLHLAAMRGHIDVLEELV 116
            D  G  PL LA  RG  D+++ L 
Sbjct: 129 RDARGLTPLELALQRGAQDLVDILQ 153

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.003
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 8/118 (6%)

Query: 63  SSALHIASQKGYVGIVKALLQ--------VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEE 114
           +  L  A+ +G V  V+ALL+            +     +   +      +  H      
Sbjct: 4   ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNC 63

Query: 115 LVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFL 172
              A            G  + L+        L+ +D +G   + LA      +  ++L
Sbjct: 64  ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	345
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.98
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.91
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.88
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-34  Score=249.08  Aligned_cols=188  Identities=23%  Similarity=0.200  Sum_probs=132.1

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++++.|++.+++.......|..|+||||+||..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|
T Consensus        19 ~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~~~L   97 (255)
T d1oy3d_          19 HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVL   97 (255)
T ss_dssp             TTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchhhhhhhccCchHHHHHH
Confidence            35666666666655443322233566666666666666666666666666665 55666666666666666666666666


Q ss_pred             HhhCCCC----------------------------------------------CcCCCCCCCcHHHHHHHcCcHHHHHHH
Q 043760           82 LQVIPDK----------------------------------------------CSDTDVDGRNPLHLAAMRGHIDVLEEL  115 (345)
Q Consensus        82 l~~~~~~----------------------------------------------~~~~d~~g~tpLh~A~~~g~~~iv~~L  115 (345)
                      ++.+...                                              .+.+|..|+||||+|+..|+.+++++|
T Consensus        98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~L  177 (255)
T d1oy3d_          98 LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL  177 (255)
T ss_dssp             SSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccch
Confidence            5432110                                              023445566666666666666666666


Q ss_pred             HhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHH
Q 043760          116 VRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILA  195 (345)
Q Consensus       116 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~  195 (345)
                      ++.+++.                       .+..+..|.||||+|++.|+.+++++|+++ |++++.+|..|+||||+|+
T Consensus       178 l~~~~~~-----------------------~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~-gadin~~d~~g~t~L~~A~  233 (255)
T d1oy3d_         178 RDAGADL-----------------------NKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSAL  233 (255)
T ss_dssp             HHHTCCT-----------------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred             hcccccc-----------------------cccccccccccccccccccHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHH
Confidence            6665552                       345678899999999999999999999998 8999999999999999999


Q ss_pred             hcCCCCchhhHHHHHHHcccccc
Q 043760          196 QSKRDIKDWDTGELLRRAGAISA  218 (345)
Q Consensus       196 ~~~~~~~~~~i~~~L~~~ga~~~  218 (345)
                      .    .++.+++++|+++||+..
T Consensus       234 ~----~~~~~i~~~Ll~~Ga~~~  252 (255)
T d1oy3d_         234 L----RPNPILARLLRAHGAPEP  252 (255)
T ss_dssp             T----SSCHHHHHHHHHTTCCCC
T ss_pred             H----CCCHHHHHHHHHcCCCCC
Confidence            9    889999999999999743

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-33  Score=237.61  Aligned_cols=189  Identities=26%  Similarity=0.294  Sum_probs=162.7

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      +|+++.|+.+++.++...+.  +|..|+||||+||..|+.+++++|+..+... ...+..+.+++++++..|+.+++++|
T Consensus        13 ~G~~~~v~~~l~~~~~~~~~--~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~L   89 (223)
T d1uoha_          13 SGKLEELKESILADKSLATR--TDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKAL   89 (223)
T ss_dssp             TTCHHHHHHHHHHCGGGGGC--CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             hCCHHHHHHHHHhCCCcCcC--cCCCCCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccccccchhHHH
Confidence            69999999999988876654  4999999999999999999999999998887 66788899999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      +++++++ +..|..|.||||+|+..|+.+++++|+++|.+                        ++.+|..|.||||+|+
T Consensus        90 l~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d------------------------~~~~~~~~~t~L~~a~  144 (223)
T d1uoha_          90 LGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------------------------PDAKDHYEATAMHRAA  144 (223)
T ss_dssp             HHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHH
T ss_pred             hccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC------------------------CCCcCCCCCccchhhh
Confidence            9999998 88999999999999999999999999999988                        6677777777888877


Q ss_pred             HcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCC
Q 043760          162 ADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQL  223 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~  223 (345)
                      ..++.+++++|+.. +++++.+|..|+||||+|+.    .++.+++++|++.||++......
T Consensus       145 ~~~~~~~~~~L~~~-~~~i~~~d~~g~TpL~~Aa~----~g~~~~v~~LL~~Gad~~~~d~~  201 (223)
T d1uoha_         145 AKGNLKMIHILLYY-KASTNIQDTEGNTPLHLACD----EERVEEAKLLVSQGASIYIENKE  201 (223)
T ss_dssp             HTTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             hcCCcchhhhhccc-cceeeeccCCCCceeccccc----cCcHHHHHHHHHCCCCCCCCCCC
Confidence            77777777777776 77777777777888888777    66777777777777776553333

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=5.9e-32  Score=233.34  Aligned_cols=194  Identities=22%  Similarity=0.196  Sum_probs=156.8

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHhcCCCC--cccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHH
Q 043760           23 TVNCLSETPLHVAALLGHEDFAKEILPQKPR--IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPL  100 (345)
Q Consensus        23 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~--~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL  100 (345)
                      -++++|+||||+||..|+.+++++|++.+++  .++.+|..|.||||+|+..|+.+++++|+++|+++ +..|.+|.|||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL   82 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTAL   82 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchhh
Confidence            3588999999999999999999999998765  34778899999999999999999999999999999 88999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCcccccccC---------Ccc--------------HHHHHHhcCCcccccccCCCCCCHH
Q 043760          101 HLAAMRGHIDVLEELVRAKPDAASTRLIW---------VGS--------------TEVLLENMGDFELLNAKDDYGMTIL  157 (345)
Q Consensus       101 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~---------~~~--------------~~~l~~~~~~~~~~~~~d~~g~t~L  157 (345)
                      |+|+..++.+++++|++............         ...              .............++.+|..|.|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            99999999999999998765432211100         000              0000011112234678899999999


Q ss_pred             HHHHHcCCHHHHHHhhhcCCccccc-cCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccC
Q 043760          158 LLAVADKQIEAIKFLTTSTAIEVNA-VTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQ  222 (345)
Q Consensus       158 h~A~~~g~~~~v~~Ll~~~~~~~~~-~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~  222 (345)
                      |+|+..++.+++++|++. +++.+. .+..|.||||+|+.    .++.+++++|+++|++++....
T Consensus       163 h~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~TpL~~A~~----~~~~~~v~~Ll~~gadin~~d~  223 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVE----AQAASVLELLLKAGADPTARMY  223 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cccccccccccccchhcc-ccccccccccccccccccccc----ccHHHHHHHHHHCCCCCCCCCC
Confidence            999999999999999999 667664 57789999999999    8899999999999998865433

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.8e-32  Score=228.15  Aligned_cols=203  Identities=19%  Similarity=0.184  Sum_probs=144.6

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCc--ccccCCCCchHHHHHHHcCCHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRI--AEELDSRKSSALHIASQKGYVGIVK   79 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~g~~~iv~   79 (345)
                      +|+.+.|+.|++.++...+.  +|.+|+||||+|+..|+.+++++|+++++++  .+..+..|.+|+|+++..+..++++
T Consensus        10 ~g~~~~v~~Ll~~~~~~~~~--~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (229)
T d1ixva_          10 ENEFFKVQELLHSKPSLLLQ--KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVK   87 (229)
T ss_dssp             HTCHHHHHHHHHHCGGGTTC--CCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             cCCHHHHHHHHHcCCCcccc--cCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccc
Confidence            58999999999987765543  4899999999999999999999999998765  3456778899999999999999888


Q ss_pred             HHHhhCCCC-CcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc-------------HHHHHHhcCCccc
Q 043760           80 ALLQVIPDK-CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS-------------TEVLLENMGDFEL  145 (345)
Q Consensus        80 ~Ll~~~~~~-~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~  145 (345)
                      .++..+... ....+..+.|||+.++..++.+++++|+..+...... +..+.+             ++.|++.+.  ..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~--~~  164 (229)
T d1ixva_          88 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGK--SA  164 (229)
T ss_dssp             HHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHHTCHHHHHHHHTTTC--CC
T ss_pred             ccccccccccccccccccccccccccccchhhhhhhhhhhccccccc-CCCCCCccchhhhccccccccccccccc--cc
Confidence            888877644 2446677888888888888888888888877763221 122222             333333321  12


Q ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccc
Q 043760          146 LNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAI  216 (345)
Q Consensus       146 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~  216 (345)
                      ++.+|.+|+||||+|+..|+.+++++|+++.|++++.+|.+|+||||+|+.       .+++++|++.|++
T Consensus       165 in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~-------~~~~~~Ll~~g~d  228 (229)
T d1ixva_         165 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN-------EQVKKFFLNNVVD  228 (229)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC-------HHHHHHHHHHCCC
T ss_pred             ccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh-------HHHHHHHHHcCCC
Confidence            566666666666666666666666666654466666666666666666654       2566666666664

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.4e-31  Score=223.15  Aligned_cols=176  Identities=21%  Similarity=0.246  Sum_probs=164.8

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++++.+++.+......   +..+.++++.|+..|+.+++++|++++.++ +.+|..|.||||+|+..|+.+++++|
T Consensus        47 ~g~~e~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~L  122 (223)
T d1uoha_          47 AGHTEIVEFLLQLGVPVNDK---DDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVML  122 (223)
T ss_dssp             HTCHHHHHHHHHHTCCSCCC---CTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             hhhhcccccccccccccccc---cccccccccccccccccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHH
Confidence            48999999999998775554   778999999999999999999999999988 89999999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      +++|.++ +..+..|.||||+|+..++.+++++|++.+.+                        ++.+|..|+||||+|+
T Consensus       123 l~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~------------------------i~~~d~~g~TpL~~Aa  177 (223)
T d1uoha_         123 LEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKAS------------------------TNIQDTEGNTPLHLAC  177 (223)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------------------SCCCCTTCCCHHHHHH
T ss_pred             HHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhccccce------------------------eeeccCCCCceecccc
Confidence            9999998 88999999999999999999999999999988                        8999999999999999


Q ss_pred             HcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHH
Q 043760          162 ADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRR  212 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~  212 (345)
                      ..|+.+++++|++. |+|++.+|.+|+||||+| .    .++.+++++|++
T Consensus       178 ~~g~~~~v~~LL~~-Gad~~~~d~~g~tpl~~A-~----~~~~~i~~~Ll~  222 (223)
T d1uoha_         178 DEERVEEAKLLVSQ-GASIYIENKEEKTPLQVA-K----GGLGLILKRMVE  222 (223)
T ss_dssp             HTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHC-C----TTHHHHHHHHHC
T ss_pred             ccCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHH-H----CCCHHHHhcccC
Confidence            99999999999998 999999999999999998 3    467789999875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=2.1e-32  Score=238.77  Aligned_cols=196  Identities=17%  Similarity=0.191  Sum_probs=147.9

Q ss_pred             CHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHH--------hcCCCCcccccCCCCchHHHHHHHcCCH
Q 043760            4 SVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEI--------LPQKPRIAEELDSRKSSALHIASQKGYV   75 (345)
Q Consensus         4 ~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~L--------l~~~~~~~~~~d~~g~tpLh~A~~~g~~   75 (345)
                      +.++++.|.+.+.+..+    +.+|+||||+||..|+.+++++|        ++.|+++ +.+|..|+||||+|+..|+.
T Consensus        13 ~~~~~~~l~~~~~n~~~----~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~~G~TpLh~A~~~g~~   87 (277)
T d2fo1e1          13 SYAITEPITRESVNIID----PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRR   87 (277)
T ss_dssp             SSCCCSCCSTTTTTTCC----CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHhcCCCcCC----CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCCCCCeeeccccccccc
Confidence            33444445555544322    34699999999999999988776        5668888 88999999999999999999


Q ss_pred             HHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccc--ccccCCcc---------------------
Q 043760           76 GIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAAS--TRLIWVGS---------------------  132 (345)
Q Consensus        76 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~--~~~~~~~~---------------------  132 (345)
                      +++++|+++|+++ +.+|.+|.|||++|+..++.++++++.........  ..+....+                     
T Consensus        88 ~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (277)
T d2fo1e1          88 RLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLV  166 (277)
T ss_dssp             HHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHH
T ss_pred             ccccccccccccc-ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccc
Confidence            9999999999998 78999999999999999999999888654221100  00000000                     


Q ss_pred             ------------------------------------HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcC
Q 043760          133 ------------------------------------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTST  176 (345)
Q Consensus       133 ------------------------------------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~  176 (345)
                                                          ...++..  .....+.+|..|+||||+|+..|+.+++++|+++ 
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~--~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~-  243 (277)
T d2fo1e1         167 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE--KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-  243 (277)
T ss_dssp             HHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH--SCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-
T ss_pred             cccccccccccccccccccCCCCcccccccccccccccccccc--ccccccccCCCCCCHHHHHHHcCCHHHHHHHHHC-
Confidence                                                1222211  1222667788888888888888888888888887 


Q ss_pred             CccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHH
Q 043760          177 AIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRR  212 (345)
Q Consensus       177 ~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~  212 (345)
                      |+|++.+|.+|+||||+|++    .++.+++++|.+
T Consensus       244 gadin~~d~~G~T~L~~A~~----~~~~~iv~lL~~  275 (277)
T d2fo1e1         244 GASVEAVDATDHTARQLAQA----NNHHNIVDIFDR  275 (277)
T ss_dssp             TCCSSCCCSSSCCHHHHHHH----TTCHHHHHHHHT
T ss_pred             cCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHH
Confidence            88888888888888888888    778888888875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.7e-30  Score=224.60  Aligned_cols=208  Identities=25%  Similarity=0.263  Sum_probs=169.1

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCc---------------------------
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRI---------------------------   54 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~---------------------------   54 (345)
                      +|++++|+.|+++|+++....  +..|+||||+|+..|+.+++++|++.+...                           
T Consensus        15 ~~~~e~vk~Ll~~G~din~~~--~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (285)
T d1wdya_          15 NEDVDLVQQLLEGGANVNFQE--EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFL   92 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCC--TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCcCccC--CCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhh
Confidence            699999999999999875442  567999999999999999999999876544                           


Q ss_pred             -----ccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCC---------cCCCCCCCcHHHHHHHcCcHHHHHHHHhc-C
Q 043760           55 -----AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC---------SDTDVDGRNPLHLAAMRGHIDVLEELVRA-K  119 (345)
Q Consensus        55 -----~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~---------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~  119 (345)
                           ....+..+.++|++|+..|+..+++.++....+..         ...+..|.||||+|+++|+.+++++|++. +
T Consensus        93 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  172 (285)
T d1wdya_          93 SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG  172 (285)
T ss_dssp             HTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSC
T ss_pred             hhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccC
Confidence                 12234556777888888888888877777655541         12345699999999999999999999976 4


Q ss_pred             CCcccccccCCcc-----------------HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccc
Q 043760          120 PDAASTRLIWVGS-----------------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNA  182 (345)
Q Consensus       120 ~~~~~~~~~~~~~-----------------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  182 (345)
                      .+.... +..+..                 ++.|++.+.+   ++.+|..|.||||+|++.|+.+++++||+..|++++.
T Consensus       173 ~~i~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~---~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~  248 (285)
T d1wdya_         173 ADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND  248 (285)
T ss_dssp             CCTTCC-CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC---SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTC
T ss_pred             CCcccc-cCCCCcccccccccccchHHHHHHHHHHHCCCC---CCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcC
Confidence            443222 222211                 5667777666   8899999999999999999999999999987999999


Q ss_pred             cCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          183 VTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       183 ~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      +|.+|+||||+|++    .++.+++++|+++||+++.
T Consensus       249 ~d~~G~TpL~~A~~----~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         249 TDSDGKTALLLAVE----LKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             CCTTSCCHHHHHHH----TTCHHHHHHHHHHSSCSCC
T ss_pred             CCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCc
Confidence            99999999999999    8899999999999999754

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-30  Score=206.59  Aligned_cols=154  Identities=25%  Similarity=0.296  Sum_probs=147.7

Q ss_pred             cHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcH
Q 043760           30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI  109 (345)
Q Consensus        30 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  109 (345)
                      +|||+||..|+.++|++|+++|+++ +.+|..|.||||+|+ .|+.+++++|+++++++ +..+..|.++|+.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccccc
Confidence            8999999999999999999999998 999999999999886 79999999999999998 88999999999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCc
Q 043760          110 DVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFT  189 (345)
Q Consensus       110 ~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T  189 (345)
                      ++++.|+..+.+                        ++..|..|.+|||+|+..++.+++++|+++++.+++.+|..|+|
T Consensus        80 ~~~~~l~~~~~~------------------------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~T  135 (156)
T d1ihba_          80 DTLQTLLEFQAD------------------------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT  135 (156)
T ss_dssp             HHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCC
T ss_pred             cccccccccccc------------------------ccccccccccccccccccccccccccccccccccccccCCCCCC
Confidence            999999999887                        88899999999999999999999999999977799999999999


Q ss_pred             HHHHHHhcCCCCchhhHHHHHHHcc
Q 043760          190 AWDILAQSKRDIKDWDTGELLRRAG  214 (345)
Q Consensus       190 ~L~~a~~~~~~~~~~~i~~~L~~~g  214 (345)
                      |||+|+.    .++.+++++|+++|
T Consensus       136 pL~~A~~----~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         136 ACDLARL----YGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHH----TTCHHHHHHHHHTC
T ss_pred             HHHHHHH----cCCHHHHHHHHhcC
Confidence            9999999    88999999999987

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.8e-30  Score=234.03  Aligned_cols=204  Identities=27%  Similarity=0.331  Sum_probs=155.1

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|++++|+.|++.|+++...   |..|+||||+||..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|
T Consensus        10 ~g~~~~v~~Ll~~g~~in~~---d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~~g~t~L~~A~~~g~~~~~~~L   85 (408)
T d1n11a_          10 MGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLL   85 (408)
T ss_dssp             HTCHHHHHHHHHTTCCSCCS---SSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CcCHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            59999999999999886554   889999999999999999999999999998 88999999999999988877665554


Q ss_pred             H------------------------------------------------------------------hhCCCCCcCCCCC
Q 043760           82 L------------------------------------------------------------------QVIPDKCSDTDVD   95 (345)
Q Consensus        82 l------------------------------------------------------------------~~~~~~~~~~d~~   95 (345)
                      +                                                                  +++.++ +..+.+
T Consensus        86 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~-~~~~~~  164 (408)
T d1n11a_          86 LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKN  164 (408)
T ss_dssp             HHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSS
T ss_pred             HHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCc
Confidence            4                                                                  445555 566778


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCcc-------------------------------------------
Q 043760           96 GRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGS-------------------------------------------  132 (345)
Q Consensus        96 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-------------------------------------------  132 (345)
                      |.+|||+|+..|+.+++++|+.+|++..... ..+.+                                           
T Consensus       165 ~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  243 (408)
T d1n11a_         165 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA-WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH  243 (408)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHGGGTCCSCCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCcccccC-CCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCc
Confidence            8899999999999999999998877653221 11111                                           


Q ss_pred             ------------------------------------HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcC
Q 043760          133 ------------------------------------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTST  176 (345)
Q Consensus       133 ------------------------------------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~  176 (345)
                                                          +++|++.+.+   ++..+..+.||||.++..++.++++++++. 
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~---~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~-  319 (408)
T d1n11a_         244 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMGYTPLHVASHYGNIKLVKFLLQH-  319 (408)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-
T ss_pred             HhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc---cccccccccccchhhcccCcceeeeeeccc-
Confidence                                                3444444443   455555566666666666666666666666 


Q ss_pred             CccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          177 AIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       177 ~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      |+++|.+|.+|+||||+|++    .++.+++++|+++||+++.
T Consensus       320 g~~in~~d~~G~T~Lh~A~~----~g~~~iv~~Ll~~GAd~n~  358 (408)
T d1n11a_         320 QADVNAKTKLGYSPLHQAAQ----QGHTDIVTLLLKNGASPNE  358 (408)
T ss_dssp             TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSCC
T ss_pred             cccccccCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            67777888888888888888    6778888888888887755

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=4.9e-30  Score=214.45  Aligned_cols=173  Identities=24%  Similarity=0.272  Sum_probs=154.0

Q ss_pred             HHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHH--------
Q 043760            5 VNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVG--------   76 (345)
Q Consensus         5 ~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~--------   76 (345)
                      -|+|+.|+++|+++....  |.+|.||||+||.+|+.+++++|++.++++ +.++..+.++++.++..++..        
T Consensus         2 ~~~v~~Ll~~g~din~~~--d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATM--DKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCcCcCc--CCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccc
Confidence            479999999999975432  788999999999999999999999999998 888999999999988775544        


Q ss_pred             --------------------------HHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCC
Q 043760           77 --------------------------IVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWV  130 (345)
Q Consensus        77 --------------------------iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~  130 (345)
                                                ..+.|...+.++ +..+..|.|||++++..+..++++.+++.+.+         
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~---------  148 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHAN---------  148 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---------
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccccc---------
Confidence                                      355566677776 67788899999999999999999999998887         


Q ss_pred             ccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHH
Q 043760          131 GSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELL  210 (345)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L  210 (345)
                                     ++..|..|.||||+|+..|+.+++++||+. |+|++.+|..|+||||+|++    .++.+++++|
T Consensus       149 ---------------~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-gad~n~~d~~g~Tpl~~A~~----~~~~~iv~lL  208 (209)
T d1ot8a_         149 ---------------RDAQDDKDETPLFLAAREGSYEASKALLDN-FANREITDHMDRLPRDVASE----RLHHDIVRLL  208 (209)
T ss_dssp             ---------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred             ---------------ccccccccccccchhccccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHH----cCCHHHHhhc
Confidence                           889999999999999999999999999998 99999999999999999999    8999999987

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=1.6e-29  Score=222.17  Aligned_cols=189  Identities=20%  Similarity=0.162  Sum_probs=123.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcC
Q 043760           28 SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG  107 (345)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  107 (345)
                      +.|+||.||..|+.++|++|+++|+++ +.+|..|.||||+|+..|+.+++++|++++.+. ...+..+.+||+.|+..+
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcHHHHHHhcCCceeeeeeccccccc-cccccccccccccccccc
Confidence            445555555555555555555555554 555555555555555555555555555555554 444555555555555555


Q ss_pred             cHHHHHHHHhcCCCcccccccCCcc----------------------------------------HHHHHHhcCCccccc
Q 043760          108 HIDVLEELVRAKPDAASTRLIWVGS----------------------------------------TEVLLENMGDFELLN  147 (345)
Q Consensus       108 ~~~iv~~Ll~~~~~~~~~~~~~~~~----------------------------------------~~~l~~~~~~~~~~~  147 (345)
                      +.++++.|++.+....... ..+.+                                        ...+....   ....
T Consensus       118 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  193 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAVN-SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH---INDV  193 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCC-TTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC---CCCC
T ss_pred             ccchhhcccccCccccccc-ccCccccccccccccchhccccccccccccccccccccccccccchhhhcccc---cccc
Confidence            5555555555544322211 11111                                        11111111   1245


Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccch
Q 043760          148 AKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNE  227 (345)
Q Consensus       148 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~  227 (345)
                      ..+..|.||||+|+..|+.+++++|++. |+++|.+|..|+||||+|+.    .++.+++++|+++||+++.....+.++
T Consensus       194 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~~-g~din~~~~~g~TpL~~A~~----~g~~~iv~lLl~~Gadv~~~d~~G~Ta  268 (291)
T d1s70b_         194 RHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAH----WGKEEACRILVENLCDMEAVNKVGQTA  268 (291)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             cccCCCCChhhHHHHcCChhhhcccccc-eecccccccCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            6678899999999999999999999998 89999999999999999999    889999999999999886543333333

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.5e-29  Score=211.56  Aligned_cols=192  Identities=21%  Similarity=0.185  Sum_probs=161.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCC--cCCCCCCCcHHHHHHHc
Q 043760           29 ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC--SDTDVDGRNPLHLAAMR  106 (345)
Q Consensus        29 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~--~~~d~~g~tpLh~A~~~  106 (345)
                      +||||+||+.|+.++++.|++..+..++.+|.+|+||||+|+..|+.+++++|+++|+++.  ...+..|.+|+|+++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            4899999999999999999998777779999999999999999999999999999998872  45778899999999999


Q ss_pred             CcHHHHHHHHhcCCCcccccc-cCCcc-------------HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHh
Q 043760          107 GHIDVLEELVRAKPDAASTRL-IWVGS-------------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFL  172 (345)
Q Consensus       107 g~~~iv~~Ll~~~~~~~~~~~-~~~~~-------------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~L  172 (345)
                      +..++++.++..+........ ..+.+             +..++..+..   .+.+|..|+||||+|+..|+.+++++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS---VRIKDKFNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc---ccccCCCCCCccchhhhcccccccccc
Confidence            999999999988765433221 22222             4455555544   778899999999999999999999999


Q ss_pred             hhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHH-cccccccccCCccch
Q 043760          173 TTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRR-AGAISAKDLQLPVNE  227 (345)
Q Consensus       173 l~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~-~ga~~~~~~~~~~~~  227 (345)
                      ++.++.+++.+|.+|+||||+|+.    .++.+++++|++ .|+++.........+
T Consensus       158 l~~~~~~in~~d~~g~TpLh~A~~----~~~~~~v~~Ll~~~gad~~~~d~~g~t~  209 (229)
T d1ixva_         158 CGLGKSAVNWQDKQGWTPLFHALA----EGHGDAAVLLVEKYGAEYDLVDNKGAKA  209 (229)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCSCCCCTTSCCT
T ss_pred             cccccccccccccccCCchhhhcc----cccHHHHHHHHHhcCCCCCCcCCCCCCH
Confidence            999678999999999999999999    889999999996 599886543443333

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-29  Score=212.61  Aligned_cols=176  Identities=26%  Similarity=0.331  Sum_probs=142.4

Q ss_pred             HHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCC
Q 043760            9 LELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK   88 (345)
Q Consensus         9 ~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~   88 (345)
                      +.+...+.++..   .|.+|+||||+||..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.++++.|++.+...
T Consensus        23 ~~~~~~~~~in~---~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~   98 (221)
T d1iknd_          23 RQVKGDLAFLNF---QNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP   98 (221)
T ss_dssp             C-----CCCCCC---CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTT
T ss_pred             HHHHhCCCCccc---CCCCCCccccccccccccccccccccccccc-cccccccccccccccccccccccchhhhhcccc
Confidence            344445555433   3778888888888888888888888888887 778888888888888888888888888765443


Q ss_pred             -----CcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCccccccc-CCCCCCHHHHHHH
Q 043760           89 -----CSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAK-DDYGMTILLLAVA  162 (345)
Q Consensus        89 -----~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-d~~g~t~Lh~A~~  162 (345)
                           .......|.||||.|+..++.+++++|+..++.                        ++.. +..|+||||+|++
T Consensus        99 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~------------------------~~~~~~~~G~T~L~~A~~  154 (221)
T d1iknd_          99 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD------------------------VNAQEPCNGRTALHLAVD  154 (221)
T ss_dssp             SSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC------------------------TTCCCTTTCCCHHHHHHH
T ss_pred             cccccccccccccchhhhHHhhcCChhheeeecccCcc------------------------cccccccCCCCccccccc
Confidence                 233445678888888888888888888888777                        5554 4679999999999


Q ss_pred             cCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccc
Q 043760          163 DKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAIS  217 (345)
Q Consensus       163 ~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~  217 (345)
                      .|+.+++++|++. |+|++.+|.+|+||||+|+.    .++.+++++|.+.+.+.
T Consensus       155 ~g~~~~v~~Ll~~-gad~~~~~~~G~tpl~~A~~----~~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         155 LQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWG----RPSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             TTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCTT----SSCHHHHHHHHTTSCGG
T ss_pred             cccHHHHHHHHhc-CCcccccCCCCCCHHHHHHH----CCCHHHHHHHHHcCCcc
Confidence            9999999999998 89999999999999999999    78899999999987764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.5e-29  Score=197.64  Aligned_cols=152  Identities=25%  Similarity=0.321  Sum_probs=140.4

Q ss_pred             cHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcH
Q 043760           30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI  109 (345)
Q Consensus        30 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  109 (345)
                      +.||.||..|+.++|++|++.+...++.+|..|+||||+|+ .|+.+++++|++++.++ +..+..|.+||+.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccc-cccccccccccccccccccc
Confidence            46999999999999999998754334899999999999987 48899999999999998 78899999999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCc
Q 043760          110 DVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFT  189 (345)
Q Consensus       110 ~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T  189 (345)
                      ++++++++.+++                        ++.+|..|+||||+|+..|+.+++++|+ . +++++.+|..|+|
T Consensus        82 ~~~~~~l~~~~~------------------------~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~-~~~~~~~d~~G~T  135 (156)
T d1bd8a_          82 DTLKVLVEHGAD------------------------VNVPDGTGALPIHLAVQEGHTAVVSFLA-A-ESDLHRRDARGLT  135 (156)
T ss_dssp             HHHHHHHHTTCC------------------------SCCCCTTSCCHHHHHHHHTCHHHHHHHH-T-TSCTTCCCTTSCC
T ss_pred             cccccccccccc------------------------cccccCCCCeeecccccccccccccccc-c-cccccccCCCCCC
Confidence            999999999988                        8899999999999999999999999887 4 7899999999999


Q ss_pred             HHHHHHhcCCCCchhhHHHHHHHc
Q 043760          190 AWDILAQSKRDIKDWDTGELLRRA  213 (345)
Q Consensus       190 ~L~~a~~~~~~~~~~~i~~~L~~~  213 (345)
                      |||+|+.    .++.+++++|+++
T Consensus       136 pL~~A~~----~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         136 PLELALQ----RGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHH----SCCHHHHHHHHTT
T ss_pred             HHHHHHH----cCCHHHHHHHHhh
Confidence            9999999    8999999999865

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.5e-29  Score=207.88  Aligned_cols=195  Identities=20%  Similarity=0.201  Sum_probs=153.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhc----CCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHH
Q 043760           27 LSETPLHVAALLGHEDFAKEILP----QKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHL  102 (345)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~  102 (345)
                      +|+||||+||..|+.++++.|++    .+.++ +.+|..|+||||+|+..|+.+++++|+++|++. +..+..|.++++.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhcccccccccccccccccc-ccccccccccccc
Confidence            59999999999999999998875    67777 889999999999999999999999999999998 7889999999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCcccccccCC---cc-------------HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCH
Q 043760          103 AAMRGHIDVLEELVRAKPDAASTRLIWV---GS-------------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQI  166 (345)
Q Consensus       103 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~---~~-------------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~  166 (345)
                      |...++.++++.+...............   ..             ...+......  .....+..|.++||.|+..+..
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~a~~~~~~  157 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD--IDAVDIKSGRSPLIHAVENNSL  157 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccc--cccccccchhhHHHHHHHhhhh
Confidence            9999999999988776544322211111   11             2222222222  2445567788999999999999


Q ss_pred             HHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccchhhh
Q 043760          167 EAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELAV  230 (345)
Q Consensus       167 ~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~  230 (345)
                      .+++.+++. +.+++.+|..|.||||+|+.    .++.+++++|++.|++++.......+++..
T Consensus       158 ~~~~~~~~~-~~~~~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~  216 (228)
T d1k1aa_         158 SMVQLLLQH-GANVNAQMYSGSSALHSASG----RGLLPLVRTLVRSGADSSLKNCHNDTPLMV  216 (228)
T ss_dssp             HHHHHHHHT-TCCTTCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCTTCCCTTSCCTTTT
T ss_pred             hhhhhhhhh-ccccccccccCcchHHHHHH----cCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            999999988 78889999999999999998    778899999999999876544444444333

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.6e-28  Score=195.07  Aligned_cols=150  Identities=29%  Similarity=0.358  Sum_probs=141.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCc
Q 043760           29 ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGH  108 (345)
Q Consensus        29 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  108 (345)
                      .||||.||+.|+.++|++||++|+++ + .|..|+||||+|+..++.++++.++...... ...+..+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            49999999999999999999999986 4 6999999999999999999999999998887 6778889999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCC
Q 043760          109 IDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGF  188 (345)
Q Consensus       109 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~  188 (345)
                      .+++++++..+.+                        .+.+|..|+||||+|+..|+.+++++|++. |++++.+|..|.
T Consensus        80 ~~~~~~l~~~~~~------------------------~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~-gad~~~~d~~g~  134 (153)
T d1awcb_          80 ANIVEVLLKHGAD------------------------VNAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCK  134 (153)
T ss_dssp             HHHHHHHHTTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSC
T ss_pred             ceeeecccccCCc------------------------cccccccCchHHHhhhhcchhheeeecccc-ccCCcccCCCCC
Confidence            9999999999888                        788999999999999999999999999999 899999999999


Q ss_pred             cHHHHHHhcCCCCchhhHHHHH
Q 043760          189 TAWDILAQSKRDIKDWDTGELL  210 (345)
Q Consensus       189 T~L~~a~~~~~~~~~~~i~~~L  210 (345)
                      ||||+|+.    .++.+++++|
T Consensus       135 Tpl~~A~~----~g~~eiv~lL  152 (153)
T d1awcb_         135 TAFDISID----NGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHH----TTCHHHHHHH
T ss_pred             CHHHHHHH----cCCHHHHHhC
Confidence            99999999    8899999987

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.2e-27  Score=213.67  Aligned_cols=197  Identities=25%  Similarity=0.311  Sum_probs=164.6

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccc------------------------
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEE------------------------   57 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~------------------------   57 (345)
                      .|+.++++.|++.+.++...   +.+|.+|||+|+..|+.+++++|+.+++++ +.                        
T Consensus       142 ~~~~~~v~~ll~~~~~~~~~---~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l  217 (408)
T d1n11a_         142 YGKVRVAELLLERDAHPNAA---GKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSL  217 (408)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC---CSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCcC---CCcCchHHHHHHHcCCHHHHHHHHhcCCcc-cccCCCCCCcchhhhccchhhhhhhh
Confidence            57888999999988775543   778999999999999999999999887765 33                        


Q ss_pred             ---------cCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccc
Q 043760           58 ---------LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLI  128 (345)
Q Consensus        58 ---------~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  128 (345)
                               .+..|.||||+|+..++.+++++++..+... +..+..|.|||+.|+..++.+++++|+++|++.......
T Consensus       218 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~  296 (408)
T d1n11a_         218 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM  296 (408)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSS
T ss_pred             hhccccccccCCCCCCHHHHHHHhCcHhHhhhhhcccccc-ccccCCCCChhhhhhhcCcHHHHHHHHHCCCcccccccc
Confidence                     3445667777777778888888888887777 678889999999999999999999999998876544322


Q ss_pred             CCcc-------------HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHH
Q 043760          129 WVGS-------------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILA  195 (345)
Q Consensus       129 ~~~~-------------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~  195 (345)
                       +.+             ++.+++.+.+   +|.+|.+|+||||+|+++|+.++|++|+++ |+++|.+|.+|+||||+|+
T Consensus       297 -~~t~L~~~~~~~~~~~~~~ll~~g~~---in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~-GAd~n~~d~~G~t~L~~A~  371 (408)
T d1n11a_         297 -GYTPLHVASHYGNIKLVKFLLQHQAD---VNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIAK  371 (408)
T ss_dssp             -CCCHHHHHHHSSCSHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCSSSCCHHHHHH
T ss_pred             -ccccchhhcccCcceeeeeecccccc---ccccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHH
Confidence             222             6777777666   899999999999999999999999999999 9999999999999999999


Q ss_pred             hcCCCCchhhHHHHHHH
Q 043760          196 QSKRDIKDWDTGELLRR  212 (345)
Q Consensus       196 ~~~~~~~~~~i~~~L~~  212 (345)
                      +    .++.+++++|..
T Consensus       372 ~----~~~~~iv~~L~~  384 (408)
T d1n11a_         372 R----LGYISVTDVLKV  384 (408)
T ss_dssp             H----TTCHHHHHHHHH
T ss_pred             H----cCCHHHHHHHHH
Confidence            9    888999987753

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.6e-28  Score=204.01  Aligned_cols=179  Identities=23%  Similarity=0.267  Sum_probs=150.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHh----cCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHH
Q 043760           27 LSETPLHVAALLGHEDFAKEIL----PQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHL  102 (345)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll----~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~  102 (345)
                      +|+||||+|+..|+.+++..|+    ..+.++ +.+|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCccccccccccccccccccccccccc-ccccccccccccc
Confidence            5999999999999976655544    456676 889999999999999999999999999999999 8899999999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccc
Q 043760          103 AAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNA  182 (345)
Q Consensus       103 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  182 (345)
                      |+..|+.++++.|+..+......                  ...+.....|.||||.|+..++.+++++|+.. +.+++.
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~------------------~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~  139 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLH------------------SILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNA  139 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSS------------------CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTC
T ss_pred             ccccccccccchhhhhccccccc------------------ccccccccccchhhhHHhhcCChhheeeeccc-Cccccc
Confidence            99999999999999987653221                  11455667799999999999999999999999 777776


Q ss_pred             cC-CCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccchhhh
Q 043760          183 VT-ANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNELAV  230 (345)
Q Consensus       183 ~n-~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~  230 (345)
                      .+ ..|.||||+|+.    .++.+++++|++.|+++........+++.+
T Consensus       140 ~~~~~G~T~L~~A~~----~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~  184 (221)
T d1iknd_         140 QEPCNGRTALHLAVD----LQNPDLVSLLLKCGADVNRVTYQGYSPYQL  184 (221)
T ss_dssp             CCTTTCCCHHHHHHH----TTCHHHHHHHHTTTCCSCCCCTTCCCGGGG
T ss_pred             ccccCCCCccccccc----cccHHHHHHHHhcCCcccccCCCCCCHHHH
Confidence            65 579999999999    889999999999999987654444444444

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.9e-27  Score=186.07  Aligned_cols=144  Identities=28%  Similarity=0.403  Sum_probs=130.7

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      +|++++|++|++.+....+  ..|..|+||||+|+ .|+.+++++|++.+.++ +..+..|.+||++++..++.++++++
T Consensus        12 ~g~~~~vk~lL~~~~~~~n--~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~   87 (156)
T d1bd8a_          12 RGDVQEVRRLLHRELVHPD--ALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVL   87 (156)
T ss_dssp             HTCHHHHHHHHHTTCCCTT--CCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHhCCCCCC--ccCCCCCccccccc-ccccccccccccccccc-cccccccccccccccccccccccccc
Confidence            6999999999987543222  34899999999987 58999999999999998 88899999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      +++++++ +.+|..|.||||+|++.|+.+++++|+ .+++                        ++.+|..|+||||+|+
T Consensus        88 l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~------------------------~~~~d~~G~TpL~~A~  141 (156)
T d1bd8a_          88 VEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AESD------------------------LHRRDARGLTPLELAL  141 (156)
T ss_dssp             HHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC------------------------TTCCCTTSCCHHHHHH
T ss_pred             ccccccc-ccccCCCCeeecccccccccccccccc-cccc------------------------ccccCCCCCCHHHHHH
Confidence            9999998 789999999999999999999999887 5666                        8899999999999999


Q ss_pred             HcCCHHHHHHhhhc
Q 043760          162 ADKQIEAIKFLTTS  175 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~  175 (345)
                      +.|+.+++++|+++
T Consensus       142 ~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         142 QRGAQDLVDILQGH  155 (156)
T ss_dssp             HSCCHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHhh
Confidence            99999999999975

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.9e-27  Score=208.27  Aligned_cols=160  Identities=18%  Similarity=0.136  Sum_probs=122.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCH-------HHHHHHHhhCCCCCcCCCCCCC
Q 043760           25 NCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYV-------GIVKALLQVIPDKCSDTDVDGR   97 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~-------~iv~~Ll~~~~~~~~~~d~~g~   97 (345)
                      |.+|+||||+||..|+.++|++|+++|+++ +.+|..|+||||+||..++.       ++++++..   .+ ...|..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~-~~~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CL-ILEDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GG-GEECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hh-hhcccccC
Confidence            788999999999999999999999999998 89999999999999987752       34444432   23 56788999


Q ss_pred             cHHHHHHHcCc----HH--------HHHHHHhcCCCcccccccCCcc------------------HHHHHHhcCCccccc
Q 043760           98 NPLHLAAMRGH----ID--------VLEELVRAKPDAASTRLIWVGS------------------TEVLLENMGDFELLN  147 (345)
Q Consensus        98 tpLh~A~~~g~----~~--------iv~~Ll~~~~~~~~~~~~~~~~------------------~~~l~~~~~~~~~~~  147 (345)
                      ||||.++..+.    ..        ++.+++..+.............                  ...++.     ..+|
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~in  253 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA-----NMLN  253 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH-----HTTT
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh-----cCcc
Confidence            99999886543    22        3344555444332222221111                  111121     2278


Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHH
Q 043760          148 AKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILA  195 (345)
Q Consensus       148 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~  195 (345)
                      .+|..|+||||+|++.|+.++|++|++. |++++.+|+.|.||||+|+
T Consensus       254 ~~D~~G~TpLh~A~~~g~~~iv~~Ll~~-GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         254 AQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHcC
Confidence            9999999999999999999999999999 9999999999999999985

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4e-26  Score=181.63  Aligned_cols=145  Identities=26%  Similarity=0.389  Sum_probs=135.7

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      +|++++|+.|+++|+++...   |..|.||||+|+ .|+.+++++|++.++++ +.++..|.++|+.++..++.++++.|
T Consensus        11 ~g~~~~v~~Ll~~g~d~n~~---d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~~~~~~l   85 (156)
T d1ihba_          11 RGDLEQLTSLLQNNVNVNAQ---NGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTL   85 (156)
T ss_dssp             HTCHHHHHHHTTSCCCTTCC---CTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCcCcc---CCcccccccccc-ccccccccccccccccc-ccccccCccccccccccccccccccc
Confidence            59999999999999986544   899999999886 79999999999999998 88999999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      ++.+.++ +..+..|.+|||+|+..++.+++++|+++++..                       .+.+|..|.||||+|+
T Consensus        86 ~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~-----------------------~~~~d~~g~TpL~~A~  141 (156)
T d1ihba_          86 LEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN-----------------------VGHRNHKGDTACDLAR  141 (156)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC-----------------------TTCCCTTSCCHHHHHH
T ss_pred             ccccccc-ccccccccccccccccccccccccccccccccc-----------------------ccccCCCCCCHHHHHH
Confidence            9999998 789999999999999999999999999998742                       7889999999999999


Q ss_pred             HcCCHHHHHHhhhc
Q 043760          162 ADKQIEAIKFLTTS  175 (345)
Q Consensus       162 ~~g~~~~v~~Ll~~  175 (345)
                      +.++.+++++|+++
T Consensus       142 ~~~~~~iv~~Ll~~  155 (156)
T d1ihba_         142 LYGRNEVVSLMQAN  155 (156)
T ss_dssp             HTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHhc
Confidence            99999999999987

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-26  Score=177.90  Aligned_cols=120  Identities=23%  Similarity=0.247  Sum_probs=112.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCC-cHHHHHHHc
Q 043760           28 SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGR-NPLHLAAMR  106 (345)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~  106 (345)
                      +.++||+||..|+.+++++|+++|.++ +.+|..|.||||+|+ .|+.+++++|+++|+++ +..+..|. ||||+|++.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-ccccccccccccccccc-cccccccccccccccccc
Confidence            578999999999999999999999998 899999999999775 79999999999999999 67777665 699999999


Q ss_pred             CcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhh
Q 043760          107 GHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTT  174 (345)
Q Consensus       107 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  174 (345)
                      |+.+++++|+++|++                        ++.+|..|+||||+|+++|+.+++++|+.
T Consensus        80 g~~~~v~~Ll~~ga~------------------------~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGAR------------------------LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCC------------------------SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccc------------------------cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999998                        89999999999999999999999999985

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=3.2e-26  Score=200.85  Aligned_cols=197  Identities=24%  Similarity=0.263  Sum_probs=157.1

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|++++|+.||++|+++...   |.+|.||||+|+..|+.+++++|++++.+. ...+..+.+||++|+..++.++++.|
T Consensus        50 ~G~~~~v~~Ll~~Gadvn~~---d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~~~~~~~l  125 (291)
T d1s70b_          50 SGDTEEVLRLLERGADINYA---NVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYL  125 (291)
T ss_dssp             HTCHHHHHHHHHHCCCTTCB---CTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCcc---CCCCCcHHHHHHhcCCceeeeeeccccccc-ccccccccccccccccccccchhhcc
Confidence            49999999999999886544   899999999999999999999999999987 77889999999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCc--------------------------ccccccCCcc---
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDA--------------------------ASTRLIWVGS---  132 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~--------------------------~~~~~~~~~~---  132 (345)
                      ++++... ...|..|.+|+++|+..+..++++.++......                          .......+.+   
T Consensus       126 ~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  204 (291)
T d1s70b_         126 ISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALH  204 (291)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHH
T ss_pred             cccCccc-ccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhh
Confidence            9998776 566666666666666666666666655421110                          0011111111   


Q ss_pred             ----------HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCc
Q 043760          133 ----------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIK  202 (345)
Q Consensus       133 ----------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~  202 (345)
                                ++.|++.+.+   ++.+|..|+||||+|++.|+.++|++|+++ |+|++.+|..|+||||+|++      
T Consensus       205 ~a~~~~~~~~~~~Ll~~g~d---in~~~~~g~TpL~~A~~~g~~~iv~lLl~~-Gadv~~~d~~G~TaL~~A~e------  274 (291)
T d1s70b_         205 VAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVADE------  274 (291)
T ss_dssp             HHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTTTSCCS------
T ss_pred             HHHHcCChhhhcccccceec---ccccccCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHH------
Confidence                      4455554444   899999999999999999999999999998 99999999999999999976      


Q ss_pred             hhhHHHHHHHccc
Q 043760          203 DWDTGELLRRAGA  215 (345)
Q Consensus       203 ~~~i~~~L~~~ga  215 (345)
                        +++++|.+.+.
T Consensus       275 --~~~~~L~~~~~  285 (291)
T d1s70b_         275 --DILGYLEELQK  285 (291)
T ss_dssp             --GGGHHHHHHHH
T ss_pred             --HHHHHHHHHhh
Confidence              46677776554

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=5.3e-25  Score=174.49  Aligned_cols=141  Identities=23%  Similarity=0.326  Sum_probs=131.8

Q ss_pred             CCCHHHHHHHHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHH
Q 043760            2 AGSVNTLLELRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (345)
Q Consensus         2 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L   81 (345)
                      .|+.++|+.||++++++.    .|..|+||||+|+..++.++++.++...... ...+..+.++++.++...+.++++++
T Consensus        12 ~g~~~~v~~LL~~ga~~~----~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l   86 (153)
T d1awcb_          12 AGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVL   86 (153)
T ss_dssp             HTCHHHHHHHHHHTCCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCcc----cccCCCccccccccccccccccccccccccc-cccccccccccccccccccceeeecc
Confidence            599999999999998743    3889999999999999999999999988777 66788889999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHH
Q 043760           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAV  161 (345)
Q Consensus        82 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~  161 (345)
                      +.++.+. ...|.+|.||||+|+..|+.+++++|++.|++                        ++.+|..|.||||+|+
T Consensus        87 ~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad------------------------~~~~d~~g~Tpl~~A~  141 (153)
T d1awcb_          87 LKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD------------------------VHTQSKFCKTAFDISI  141 (153)
T ss_dssp             HTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHH
T ss_pred             cccCCcc-ccccccCchHHHhhhhcchhheeeeccccccC------------------------CcccCCCCCCHHHHHH
Confidence            9999998 78999999999999999999999999999998                        8999999999999999


Q ss_pred             HcCCHHHHHHh
Q 043760          162 ADKQIEAIKFL  172 (345)
Q Consensus       162 ~~g~~~~v~~L  172 (345)
                      .+|+.+++++|
T Consensus       142 ~~g~~eiv~lL  152 (153)
T d1awcb_         142 DNGNEDLAEIL  152 (153)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HcCCHHHHHhC
Confidence            99999999876

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.5e-26  Score=174.14  Aligned_cols=120  Identities=21%  Similarity=0.266  Sum_probs=112.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcC
Q 043760           62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMG  141 (345)
Q Consensus        62 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~  141 (345)
                      +.++||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+ .|+.+++++|+++|++                    
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~--------------------   60 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE--------------------   60 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC--------------------
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-cccccccccccccccc--------------------
Confidence            468999999999999999999999999 899999999999775 7999999999999998                    


Q ss_pred             CcccccccCCCCC-CHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHH
Q 043760          142 DFELLNAKDDYGM-TILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRR  212 (345)
Q Consensus       142 ~~~~~~~~d~~g~-t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~  212 (345)
                          ++.+|..|. ||||+|++.|+.+++++|++. |++++.+|..|+||||+|+.    .++.+++++|+.
T Consensus        61 ----~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~G~T~l~~A~~----~g~~~~v~~Lls  123 (125)
T d1bi7b_          61 ----PNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEE----LGHRDVARYLRA  123 (125)
T ss_dssp             ----CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHH----HTCHHHHHHHSS
T ss_pred             ----ccccccccccccccccccccccccccccccc-ccccccccCCCCCHHHHHHH----cCCHHHHHHHHh
Confidence                888888775 699999999999999999999 89999999999999999999    889999999875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=8.7e-27  Score=176.79  Aligned_cols=105  Identities=30%  Similarity=0.376  Sum_probs=73.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCc
Q 043760           64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDF  143 (345)
Q Consensus        64 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~  143 (345)
                      |||++|++.|+.++|++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++                      
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d----------------------   60 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD----------------------   60 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT----------------------
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccce----------------------
Confidence            5667777777777777777766666 56666677777777777777777777766666                      


Q ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHH
Q 043760          144 ELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDIL  194 (345)
Q Consensus       144 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a  194 (345)
                        ++.+|..|+||||+|+.+|+.+++++|+++ |+|++.+|.+|+||||+|
T Consensus        61 --in~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          61 --INAPDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             --TTCCSSSCSCHHHHHHTTTCCHHHHHHHTT-CCCSSSSSSSTCCCCCTC
T ss_pred             --eeecccccccchhhhhhcCchhhhhhhhcc-cccceeeCCCCCCHHHHH
Confidence              666666777777777777777777777766 667777777777777665

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=1.4e-26  Score=175.67  Aligned_cols=115  Identities=24%  Similarity=0.250  Sum_probs=106.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCc
Q 043760           29 ETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGH  108 (345)
Q Consensus        29 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  108 (345)
                      +|||++|+++|+.+++++|+++|.++ +.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-cccccccccccccccccccccccccccccccee-eecccccccchhhhhhcCc
Confidence            48999999999999999999999998 899999999999999999999999999999999 8899999999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhh
Q 043760          109 IDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLT  173 (345)
Q Consensus       109 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  173 (345)
                      .+++++|+++|++                        ++.+|.+|+||||+|..    +.++.||
T Consensus        81 ~~~v~~Ll~~Gad------------------------~~~~d~~G~t~l~~a~~----~~i~~LL  117 (118)
T d1myoa_          81 VSCVKLLLSKGAD------------------------KTVKGPDGLTALEATDN----QAIKALL  117 (118)
T ss_dssp             CHHHHHHHTTCCC------------------------SSSSSSSTCCCCCTCSS----TTTGGGG
T ss_pred             hhhhhhhhccccc------------------------ceeeCCCCCCHHHHHhH----HHHHHhc
Confidence            9999999999998                        89999999999999832    3455554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.7e-25  Score=170.07  Aligned_cols=124  Identities=26%  Similarity=0.258  Sum_probs=95.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCc
Q 043760           64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDF  143 (345)
Q Consensus        64 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~  143 (345)
                      ++|+.||..|+.++|++|+++|+++ +.+|.+|+||||+|+..|+.+++++|++.+++                      
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~----------------------   59 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN----------------------   59 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC----------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-cccccccccccccccccccccccccccccccc----------------------
Confidence            5778888888888888888888887 67788888888888888888888888888777                      


Q ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCC-CCCcHHHHHHhcCCCCchhhHHHHHHHccc
Q 043760          144 ELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTA-NGFTAWDILAQSKRDIKDWDTGELLRRAGA  215 (345)
Q Consensus       144 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~-~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga  215 (345)
                        ++.+|.+|+||||+|+.+|+.+++++|+++ |++++.++. .|+||++++...  ..++.+++++|+..+.
T Consensus        60 --~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~v~~~~~~~~~~~~~~~~a~--~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          60 --VNAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEM--EEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             --TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHCCSS--STTCCCHHHHHHHHHH
T ss_pred             --cccccccCcccccccchhhHHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHH--HcChHHHHHHHHhHHH
Confidence              777888888888888888888888888887 778887664 577887775431  1456788888876543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=9.5e-27  Score=209.68  Aligned_cols=204  Identities=14%  Similarity=0.159  Sum_probs=144.5

Q ss_pred             CCCHHHHHH---HHhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccC--CCCchHHHHHHHcCCHH
Q 043760            2 AGSVNTLLE---LRQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELD--SRKSSALHIASQKGYVG   76 (345)
Q Consensus         2 ~g~~~~v~~---ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~   76 (345)
                      +|+.++++.   |++.++++...   +..|+||||+||.+||.++|++|++.|+++ +..+  .+|+||||+||..||.+
T Consensus       100 ~g~~~~~~~~~~L~~~~~~in~~---~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~~Aa~~g~~~  175 (346)
T d2ajaa1         100 TGCSSALDTLCLLLTSDEIVKVI---QAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLAAENGHLH  175 (346)
T ss_dssp             HCCHHHHHHHTTC--CCSSCC-----CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHHHHHHTTCHH
T ss_pred             hCCHHHHHHHHHHHhCCCccccc---CCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCChhHHHHHHhhHH
Confidence            477666654   67788775544   888999999999999999999999999887 5544  46899999999999999


Q ss_pred             HHHHHHhhCCCCC--cCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccc---CCc--cHHHHHHh-------cCC
Q 043760           77 IVKALLQVIPDKC--SDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLI---WVG--STEVLLEN-------MGD  142 (345)
Q Consensus        77 iv~~Ll~~~~~~~--~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~---~~~--~~~~l~~~-------~~~  142 (345)
                      +|++|++.|++..  +..+.+|.||+|.|+.+|+.+++++|++.|++.......   .+.  ....+...       ...
T Consensus       176 iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (346)
T d2ajaa1         176 VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDA  255 (346)
T ss_dssp             HHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHH
Confidence            9999999987652  234456788888999999999999999987664322111   011  11111110       000


Q ss_pred             ------cccccccCC-------CCCCHHHHHHHcCCHHHHHHhhhcCCc----cccccCCCCCcHHHHHHhcCCCCchhh
Q 043760          143 ------FELLNAKDD-------YGMTILLLAVADKQIEAIKFLTTSTAI----EVNAVTANGFTAWDILAQSKRDIKDWD  205 (345)
Q Consensus       143 ------~~~~~~~d~-------~g~t~Lh~A~~~g~~~~v~~Ll~~~~~----~~~~~n~~g~T~L~~a~~~~~~~~~~~  205 (345)
                            ....+..+.       .+.++|+.|+..++.+++++|++.+..    +.+..+.+|+||||+|++    .++.+
T Consensus       256 l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~----~Gn~e  331 (346)
T d2ajaa1         256 FKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR----LGNQG  331 (346)
T ss_dssp             TTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHH----HTCTT
T ss_pred             HHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHH----cCcHH
Confidence                  000111111       234688999999999999999987442    234556789999999999    89999


Q ss_pred             HHHHHHHc
Q 043760          206 TGELLRRA  213 (345)
Q Consensus       206 i~~~L~~~  213 (345)
                      ++++|++.
T Consensus       332 ~v~lLL~~  339 (346)
T d2ajaa1         332 ACALLLSI  339 (346)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHhCC
Confidence            99999864

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.6e-25  Score=169.21  Aligned_cols=120  Identities=25%  Similarity=0.210  Sum_probs=110.8

Q ss_pred             cHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcH
Q 043760           30 TPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI  109 (345)
Q Consensus        30 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  109 (345)
                      ++||.||..|+.+++++|+++|.++ +.+|..|+||||+|+..|+.+++++|++.|+++ +..|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-ccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhHH
Confidence            6899999999999999999999998 999999999999999999999999999999998 89999999999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccC-CCCCCHHHHH--HHcCCHHHHHHhhhc
Q 043760          110 DVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKD-DYGMTILLLA--VADKQIEAIKFLTTS  175 (345)
Q Consensus       110 ~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d-~~g~t~Lh~A--~~~g~~~~v~~Ll~~  175 (345)
                      +++++|+++|++                        ++..+ ..|.||++++  ++.|+.+++++|+..
T Consensus        81 ~~v~~Ll~~ga~------------------------v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVESGAA------------------------VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHTTCC------------------------TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCC------------------------cccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            999999999998                        67665 4588887765  577899999999865

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=4.5e-24  Score=177.78  Aligned_cols=177  Identities=23%  Similarity=0.262  Sum_probs=149.8

Q ss_pred             HHHHHHHhcCCCCcccc-cCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcC
Q 043760           41 EDFAKEILPQKPRIAEE-LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAK  119 (345)
Q Consensus        41 ~~~v~~Ll~~~~~~~~~-~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  119 (345)
                      .++|++|+++|+++ +. .|.+|.||||+||..|+.+++++|++.|+++ +..+..+.++++.++..++...........
T Consensus         2 ~~~v~~Ll~~g~di-n~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAEL-NATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCCc-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-cccccccccccccccccccccccccccccc
Confidence            48999999999998 65 6999999999999999999999999999999 889999999999999999988887777665


Q ss_pred             CCcccccccCCcc-------------HHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCC
Q 043760          120 PDAASTRLIWVGS-------------TEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTAN  186 (345)
Q Consensus       120 ~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~  186 (345)
                      ..........+..             .+.|.....+   ++.++..|+||||+++.++..++++.+++. +.+++.+|..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~-~~~~~~~d~~  155 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD---INAADNSGKTALHWAAAVNNTEAVNILLMH-HANRDAQDDK  155 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhccc---ccccCCCCCCcchhhcccCcceeeeeeccc-cccccccccc
Confidence            5443333333322             5555665555   788999999999999999999999999999 8899999999


Q ss_pred             CCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccch
Q 043760          187 GFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNE  227 (345)
Q Consensus       187 g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~  227 (345)
                      |.||||+|+.    .++.+++++|++.||+++.......++
T Consensus       156 g~TpL~~A~~----~g~~~~v~~Ll~~gad~n~~d~~g~Tp  192 (209)
T d1ot8a_         156 DETPLFLAAR----EGSYEASKALLDNFANREITDHMDRLP  192 (209)
T ss_dssp             CCCHHHHHHH----TTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccccchhcc----ccHHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            9999999999    889999999999999886533333333

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.91  E-value=3.3e-24  Score=186.21  Aligned_cols=146  Identities=22%  Similarity=0.294  Sum_probs=107.6

Q ss_pred             CCCHHHHHHH--------HhcCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcC
Q 043760            2 AGSVNTLLEL--------RQQDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKG   73 (345)
Q Consensus         2 ~g~~~~v~~l--------l~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g   73 (345)
                      .|+.++|+.|        ++.|.++..   +|..|+||||+|+.+|+.+++++|+++|+++ +.+|..|.|||++|+..+
T Consensus        43 ~g~~~~v~~Ll~~~~~~~l~~Gadvn~---~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~  118 (277)
T d2fo1e1          43 NSSAEKSEDLIVHEAKECIAAGADVNA---MDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANR  118 (277)
T ss_dssp             TTCCSCCTTHHHHHHHHHHHTCCCTTC---CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTT
T ss_pred             cCCHHHHHHHHhcchhHHHHcCCCccc---cCCCCCeeecccccccccccccccccccccc-ccccccccccccchhhhc
Confidence            4555555554        566766554   3889999999999999999999999999987 777777888888877777


Q ss_pred             CHHHHHHHHh----------------------------------------------------------------------
Q 043760           74 YVGIVKALLQ----------------------------------------------------------------------   83 (345)
Q Consensus        74 ~~~iv~~Ll~----------------------------------------------------------------------   83 (345)
                      +.++++++..                                                                      
T Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~  198 (277)
T d2fo1e1         119 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS  198 (277)
T ss_dssp             CHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSC
T ss_pred             chhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccc
Confidence            6665555432                                                                      


Q ss_pred             ----------hCCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCC
Q 043760           84 ----------VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYG  153 (345)
Q Consensus        84 ----------~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g  153 (345)
                                ........+|..|+||||+|+..|+.+++++|+++|++                        ++.+|.+|
T Consensus       199 ~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad------------------------in~~d~~G  254 (277)
T d2fo1e1         199 NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS------------------------VEAVDATD  254 (277)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------------------SSCCCSSS
T ss_pred             cccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC------------------------CCCcCCCC
Confidence                      11111134555566666666666666666666666655                        89999999


Q ss_pred             CCHHHHHHHcCCHHHHHHhhhc
Q 043760          154 MTILLLAVADKQIEAIKFLTTS  175 (345)
Q Consensus       154 ~t~Lh~A~~~g~~~~v~~Ll~~  175 (345)
                      +||||+|+++|+.+++++|++.
T Consensus       255 ~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         255 HTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999999999864

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.1e-22  Score=161.01  Aligned_cols=119  Identities=20%  Similarity=0.192  Sum_probs=77.7

Q ss_pred             HHHHHHcCCHHHHHHHhcCCCCcc-----cccCCCCchHHHHHHHc---CCHHHHHHHHhhCCCCCcCCCCCCCcHHHHH
Q 043760           32 LHVAALLGHEDFAKEILPQKPRIA-----EELDSRKSSALHIASQK---GYVGIVKALLQVIPDKCSDTDVDGRNPLHLA  103 (345)
Q Consensus        32 Lh~Aa~~g~~~~v~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  103 (345)
                      |+.|++.+++..+..++..+.++.     ...+..|+||||+|++.   |+.+++++|+++|+++ +.+|..|+||||+|
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~A   88 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhccccccc
Confidence            456666777777777776665541     11245566777776653   4566667777766666 56666677777777


Q ss_pred             HHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhc
Q 043760          104 AMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTS  175 (345)
Q Consensus       104 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  175 (345)
                      +..|+.+++++|+++|++                        ++.+|..|.||||+|++.|+.+++++|++.
T Consensus        89 ~~~~~~~~v~~Ll~~gad------------------------~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKAS------------------------IEIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccccccccCcc------------------------ccccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            777777777777766666                        666666677777777776777777666665

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=9.7e-23  Score=161.22  Aligned_cols=125  Identities=20%  Similarity=0.180  Sum_probs=112.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCCCc-----CCCCCCCcHHHHHHHc---CcHHHHHHHHhcCCCcccccccCCccHHHH
Q 043760           65 ALHIASQKGYVGIVKALLQVIPDKCS-----DTDVDGRNPLHLAAMR---GHIDVLEELVRAKPDAASTRLIWVGSTEVL  136 (345)
Q Consensus        65 pLh~A~~~g~~~iv~~Ll~~~~~~~~-----~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l  136 (345)
                      .|+.|++.+....+..++..|.++..     ..+..|+||||+|+..   |+.+++++|+++|++               
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad---------------   73 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---------------   73 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC---------------
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC---------------
Confidence            45678899999999999998887622     2367899999999975   678999999999998               


Q ss_pred             HHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccc
Q 043760          137 LENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAI  216 (345)
Q Consensus       137 ~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~  216 (345)
                               ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+.    .++.+++++|++.++.
T Consensus        74 ---------in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~----~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          74 ---------LDKQTGKGSTALHYCCLTDNAECLKLLLRG-KASIEIANESGETPLDIAKR----LKHEHCEELLTQALSG  139 (154)
T ss_dssp             ---------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHTT
T ss_pred             ---------hhhhhhhhcccccccccccccccccccccc-CccccccCCCCCCHHHHHHH----cCCHHHHHHHHHhCCC
Confidence                     899999999999999999999999999998 99999999999999999999    8899999999998875


Q ss_pred             cc
Q 043760          217 SA  218 (345)
Q Consensus       217 ~~  218 (345)
                      ..
T Consensus       140 ~~  141 (154)
T d1dcqa1         140 RF  141 (154)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=3.4e-25  Score=199.36  Aligned_cols=134  Identities=20%  Similarity=0.291  Sum_probs=111.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHH---HhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCC--CCCCcH
Q 043760           25 NCLSETPLHVAALLGHEDFAKE---ILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTD--VDGRNP   99 (345)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~---Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d--~~g~tp   99 (345)
                      +..|.||||+||.+||.+++++   |++.++++ +.+|..|+||||+||+.||.++|++|+++|+++ +..+  .+|.||
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~  164 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHA  164 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCCh
Confidence            6689999999999999887765   77888887 889999999999999999999999999999998 4443  469999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHHHhhhcCCcc
Q 043760          100 LHLAAMRGHIDVLEELVRAKPDAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIKFLTTSTAIE  179 (345)
Q Consensus       100 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  179 (345)
                      ||+|+..|+.++|++|++.++....                     .+..+..|.||+|.|+.+|+.+++++|++. |++
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~---------------------~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~-ga~  222 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEAT---------------------AMIQAENYYAFRWAAVGRGHHNVINFLLDC-PVM  222 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHH---------------------HHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-HHH
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccc---------------------cccccCCCcchhhHHhhcCHHHHHHHHHhC-CCC
Confidence            9999999999999999999876311                     233445677888999999999999999988 666


Q ss_pred             ccc
Q 043760          180 VNA  182 (345)
Q Consensus       180 ~~~  182 (345)
                      ++.
T Consensus       223 ~~~  225 (346)
T d2ajaa1         223 LAY  225 (346)
T ss_dssp             HHH
T ss_pred             cch
Confidence            543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.5e-23  Score=170.74  Aligned_cols=167  Identities=19%  Similarity=0.176  Sum_probs=105.2

Q ss_pred             CCCHHHHHHHHh----cCCccccCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHH
Q 043760            2 AGSVNTLLELRQ----QDPLILERPTVNCLSETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGI   77 (345)
Q Consensus         2 ~g~~~~v~~ll~----~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i   77 (345)
                      .|++++++.|++    .+.++..   +|..|+||||+|+..|+.+++++|++.+++. +..+..|.++++.|...++.++
T Consensus        13 ~g~~~~v~~Ll~~~~~~g~~in~---~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~a~~~~~~~~   88 (228)
T d1k1aa_          13 QGNLPAVHRLVNLFQQGGRELDI---YNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTC   88 (228)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCSCC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHHHHHHCCCCCCc---cCCCCCccceehhcccccccccccccccccc-cccccccccccccccccccccc
Confidence            689999998875    5555443   3889999999999999999999999998776 5555555566666655555554


Q ss_pred             HHHHHhh-------------------------------------CCCCCcCCCCCCCcHHHHHHHcCcHHHHHHHHhcCC
Q 043760           78 VKALLQV-------------------------------------IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELVRAKP  120 (345)
Q Consensus        78 v~~Ll~~-------------------------------------~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  120 (345)
                      ++.+...                                     ..+.....+..|.+||+.|+..+...+++.+++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~  168 (228)
T d1k1aa_          89 LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA  168 (228)
T ss_dssp             HHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             hhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhcc
Confidence            4443321                                     112212333456666666666666666666666555


Q ss_pred             CcccccccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCCHHHHH-------HhhhcCCccccccCCCCCcHHHH
Q 043760          121 DAASTRLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQIEAIK-------FLTTSTAIEVNAVTANGFTAWDI  193 (345)
Q Consensus       121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~-------~Ll~~~~~~~~~~n~~g~T~L~~  193 (345)
                      .                        .+.+|..|.||||+|+..|+.++++       -        ++.+|.+|+||||+
T Consensus       169 ~------------------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad--------~n~~d~~G~TpL~~  216 (228)
T d1k1aa_         169 N------------------------VNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD--------SSLKNCHNDTPLMV  216 (228)
T ss_dssp             C------------------------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC--------TTCCCTTSCCTTTT
T ss_pred             c------------------------cccccccCcchHHHHHHcCCHHHHHHHHHCCCC--------CCCCCCCCCCHHHH
Confidence            5                        5555666666666666666655441       1        13345566666666


Q ss_pred             HHhcCCCCchhhHHH
Q 043760          194 LAQSKRDIKDWDTGE  208 (345)
Q Consensus       194 a~~~~~~~~~~~i~~  208 (345)
                      |++    .++.+++|
T Consensus       217 A~~----~~~~divk  227 (228)
T d1k1aa_         217 ARS----RRVIDILR  227 (228)
T ss_dssp             CSS----HHHHHHHT
T ss_pred             HHh----CCCccccC
Confidence            655    55555543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.5e-21  Score=168.48  Aligned_cols=190  Identities=22%  Similarity=0.170  Sum_probs=150.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCcccccCCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcC
Q 043760           28 SETPLHVAALLGHEDFAKEILPQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG  107 (345)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  107 (345)
                      +.|+||.|++.|+.++|++|+++|+++....+..|+||||+|+..|+.+++++|++.+... ...+..+.+|.+.|+..+
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~-~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccc-cccccccchhhHHHhhcC
Confidence            6799999999999999999999999983344568999999999999999999999999988 678889999999999999


Q ss_pred             cHHHHHHHHhcCCCcccccccCCcc-------------HHHHHHhcCC-------cccccccCCCCCCHHHHHHHcCCHH
Q 043760          108 HIDVLEELVRAKPDAASTRLIWVGS-------------TEVLLENMGD-------FELLNAKDDYGMTILLLAVADKQIE  167 (345)
Q Consensus       108 ~~~iv~~Ll~~~~~~~~~~~~~~~~-------------~~~l~~~~~~-------~~~~~~~d~~g~t~Lh~A~~~g~~~  167 (345)
                      ..+...++++...+.... +..+.+             ...+++....       .......+..|.||||+|+..|+.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             Cccccchhhhhccccccc-ccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence            999999999887664332 222222             2223332211       1112344567999999999999999


Q ss_pred             HHHHhhhcCCccccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHccccccc
Q 043760          168 AIKFLTTSTAIEVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAK  219 (345)
Q Consensus       168 ~v~~Ll~~~~~~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~  219 (345)
                      ++++|+++.|++++..|..|.+++..+..........+++++|++.|++.+.
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~  214 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV  214 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCc
Confidence            9999998878999999999988888776654445566788889988888754

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=3.9e-22  Score=175.79  Aligned_cols=149  Identities=18%  Similarity=0.133  Sum_probs=111.5

Q ss_pred             CCCCccccc-CCCCchHHHHHHHcCCHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHHcCcH---HHHHHHHhcCCCcccc
Q 043760           50 QKPRIAEEL-DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI---DVLEELVRAKPDAAST  125 (345)
Q Consensus        50 ~~~~~~~~~-d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~---~iv~~Ll~~~~~~~~~  125 (345)
                      .+.++ +.. |..|+||||+||..|+.++|++|+++|+++ +.+|..|+||||.|+..++.   +.++.|++.....   
T Consensus        95 ~~~dv-n~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~---  169 (301)
T d1sw6a_          95 TQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC---  169 (301)
T ss_dssp             SCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG---
T ss_pred             cCCCc-CcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh---
Confidence            34455 444 899999999999999999999999999999 78999999999999987752   1222222221111   


Q ss_pred             cccCCccHHHHHHhcCCcccccccCCCCCCHHHHHHHcCC----HH--------HHHHhhhcCCc---------------
Q 043760          126 RLIWVGSTEVLLENMGDFELLNAKDDYGMTILLLAVADKQ----IE--------AIKFLTTSTAI---------------  178 (345)
Q Consensus       126 ~~~~~~~~~~l~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~----~~--------~v~~Ll~~~~~---------------  178 (345)
                                          ++.+|..|+||||+++..+.    ..        ++.++++....               
T Consensus       170 --------------------~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  229 (301)
T d1sw6a_         170 --------------------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND  229 (301)
T ss_dssp             --------------------GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------
T ss_pred             --------------------hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHH
Confidence                                66778899999998886543    22        23334333211               


Q ss_pred             ---------------------cccccCCCCCcHHHHHHhcCCCCchhhHHHHHHHcccccccccCCccch
Q 043760          179 ---------------------EVNAVTANGFTAWDILAQSKRDIKDWDTGELLRRAGAISAKDLQLPVNE  227 (345)
Q Consensus       179 ---------------------~~~~~n~~g~T~L~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~  227 (345)
                                           .+|.+|..|+||||+|++    .++.+++++|++.||++........++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~----~g~~~iv~~Ll~~GAd~~~~n~~G~Tp  295 (301)
T d1sw6a_         230 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR----LGNISIVDALLDYGADPFIANKSGLRP  295 (301)
T ss_dssp             ------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHH----HCCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred             HHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence                                 168899999999999999    889999999999999987655555444