Citrus Sinensis ID: 043767

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
NHQSSEERTMSRGSGGAAGGGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFSKRYLLLKRLLKLPCALA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEEEEEcccccccEEccHHHHHHHHHHEEEccEEcccccEEEEEEEccEEEEEEccccccHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEccccHHHHccccccccEEEEEEEEcccccccccccHHHHHHHHHHHEEEcccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHcccHHHcc
Coil and Loop (DISEMBL)
nhqsseertmsrgsggaagggakgkkkgatftidcakpvedKIMDIASLEKFLQERIKVggkagalgdtvtvtrdktkitvlsdsnfSKRYLLLKRLLKLPCALA
Flexible Loop (DISEMBL)
nhqsseertmsrgsggaagggakgkkkgatfTIDCAKPVEDKIMDIASLEKFLQERIKVggkagalgdtvtvtrdktkitvlsdsnfskrylLLKRLlklpcala
Low Complexity Region (SEG)
NHQSSEERTMSRGSggaagggakgkkkgaTFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFSkrylllkrllklPCALA
Disordered region (IsUnstruct)
****************************ATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFSKRYLLLKRLLKLPCA**
Disordered Region (DISOPRED)
******************************FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFSKRYLLLKRLLKLPCALA
Disordered Region (DISEMBL)
****************************ATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFSKRYLLLKRLLKLPCALA
Disordered Region (DISPRO)
***********************GKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFSKRYLLLKRLLKLPCALA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
NHQSSEERTMSRGSGGAAGGGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFSKRYLLLKRLLKLPCALA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q9M9W1	124	60S ribosomal protein L22	yes	no	0.733	0.620	0.777	2e-27
Q9FE58	124	60S ribosomal protein L22	yes	no	0.590	0.5	0.774	1e-22
Q9SRX7	127	Putative 60S ribosomal pr	no	no	0.714	0.590	0.653	7e-22
P47198	128	60S ribosomal protein L22	yes	no	0.666	0.546	0.619	1e-16
P67985	128	60S ribosomal protein L22	yes	no	0.666	0.546	0.619	2e-16
P67984	128	60S ribosomal protein L22	yes	no	0.666	0.546	0.619	2e-16
Q4R5I3	128	60S ribosomal protein L22	N/A	no	0.666	0.546	0.619	2e-16
P35268	128	60S ribosomal protein L22	yes	no	0.571	0.468	0.655	3e-15
Q90YU6	128	60S ribosomal protein L22	N/A	no	0.571	0.468	0.655	3e-15
Q98TF8	128	60S ribosomal protein L22	yes	no	0.571	0.468	0.655	4e-15

>sp|Q9M9W1|RL222_ARATH 60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 72/81 (88%), Gaps = 4/81 (4%)

Query: 10 MSRGSGGAAGGGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDT 69
          MSRG  GAA   AKGKKKG +FTIDC+KPV+DKIM+IASLEKFLQERIKVGGKAGALGD+
Sbjct: 1  MSRG--GAAV--AKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDS 56

Query: 70 VTVTRDKTKITVLSDSNFSKR 90
          VT+TR+K+KITV +D  FSKR
Sbjct: 57 VTITREKSKITVTADGQFSKR 77

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FE58|RL223_ARATH 60S ribosomal protein L22-3 OS=Arabidopsis thaliana GN=RPL22C PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 58/62 (93%)

Query: 29 ATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFS 88
           +FTIDC+KPV+DKIM+IASLEKFLQERIKVGGKAGALGD+V++TR+K+KITV +D  FS
Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFS 75

Query: 89 KR 90
          KR
Sbjct: 76 KR 77

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRX7|RL221_ARATH Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana GN=RPL22A PE=3 SV=1

 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 61/75 (81%)

Query: 16 GAAGGGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRD 75
          GA   GA  KKKG +F IDC+KPV+D I++IA+LEKFLQERIKV GKAGALG++V++TR 
Sbjct: 5  GAKSSGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRY 64

Query: 76 KTKITVLSDSNFSKR 90
            KI V ++SNFSKR
Sbjct: 65 NGKINVNANSNFSKR 79

Arabidopsis thaliana (taxid: 3702)

>sp|P47198|RL22_RAT 60S ribosomal protein L22 OS=Rattus norvegicus GN=Rpl22 PE=2 SV=2

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 21 GAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGAL-GDTVTVTRDKTKI 79
          G K KK+   FT+DC  PVED IMD A+ E+FLQERIKV GKAG L G  VT+ R K+KI
Sbjct: 11 GGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKI 70

Query: 80 TVLSDSNFSKR 90
          TV S+  FSKR
Sbjct: 71 TVTSEEPFSKR 81

Rattus norvegicus (taxid: 10116)

>sp|P67985|RL22_PIG 60S ribosomal protein L22 OS=Sus scrofa GN=RPL22 PE=2 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 21 GAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGAL-GDTVTVTRDKTKI 79
          G K KK+   FT+DC  PVED IMD A+ E+FLQERIKV GKAG L G  VT+ R K+KI
Sbjct: 11 GGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKI 70

Query: 80 TVLSDSNFSKR 90
          TV S+  FSKR
Sbjct: 71 TVTSEVPFSKR 81

Sus scrofa (taxid: 9823)

>sp|P67984|RL22_MOUSE 60S ribosomal protein L22 OS=Mus musculus GN=Rpl22 PE=2 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 21 GAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGAL-GDTVTVTRDKTKI 79
          G K KK+   FT+DC  PVED IMD A+ E+FLQERIKV GKAG L G  VT+ R K+KI
Sbjct: 11 GGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKI 70

Query: 80 TVLSDSNFSKR 90
          TV S+  FSKR
Sbjct: 71 TVTSEVPFSKR 81

Mus musculus (taxid: 10090)

>sp|Q4R5I3|RL22_MACFA 60S ribosomal protein L22 OS=Macaca fascicularis GN=RPL22 PE=2 SV=3

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 21 GAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGAL-GDTVTVTRDKTKI 79
          G K KK+   FT+DC  PVED IMD A+ E+FLQERIKV GKAG L G  VT+ R K+KI
Sbjct: 11 GGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKI 70

Query: 80 TVLSDSNFSKR 90
          TV S+  FSKR
Sbjct: 71 TVTSEVPFSKR 81

Macaca fascicularis (taxid: 9541)

>sp|P35268|RL22_HUMAN 60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 1/61 (1%)

Query: 31 FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGAL-GDTVTVTRDKTKITVLSDSNFSK 89
          FT+DC  PVED IMD A+ E+FLQERIKV GKAG L G  VT+ R K+KITV S+  FSK
Sbjct: 21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSK 80

Query: 90 R 90
          R
Sbjct: 81 R 81

Homo sapiens (taxid: 9606)

>sp|Q90YU6|RL22_ICTPU 60S ribosomal protein L22 OS=Ictalurus punctatus GN=rpl22 PE=2 SV=3

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 1/61 (1%)

Query: 31 FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGAL-GDTVTVTRDKTKITVLSDSNFSK 89
          FT+DC  PVED IMD A+ E+FLQERIKV GKAG L G  V++ R K+KITV SD  FSK
Sbjct: 21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVSIERSKSKITVTSDIPFSK 80

Query: 90 R 90
          R
Sbjct: 81 R 81

Ictalurus punctatus (taxid: 7998)

>sp|Q98TF8|RL22_CHICK 60S ribosomal protein L22 OS=Gallus gallus GN=RPL22 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 1/61 (1%)

Query: 31 FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGAL-GDTVTVTRDKTKITVLSDSNFSK 89
          FT+DC  PVED IMD A+ E+FLQERIKV GKAG L G  VT+ R K+KITV S+  FSK
Sbjct: 21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSK 80

Query: 90 R 90
          R
Sbjct: 81 R 81

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
255542760	125	60S ribosomal protein L22, putative [Ric	0.742	0.624	0.876	1e-30
255638043	124	unknown [Glycine max]	0.733	0.620	0.864	2e-30
356576805	124	PREDICTED: 60S ribosomal protein L22-2-l	0.733	0.620	0.864	3e-30
118482052	124	unknown [Populus trichocarpa]	0.704	0.596	0.905	7e-30
356535057	124	PREDICTED: 60S ribosomal protein L22-2-l	0.733	0.620	0.851	7e-30
118484642	124	unknown [Populus trichocarpa]	0.704	0.596	0.878	1e-29
351726188	119	uncharacterized protein LOC100305544 [Gl	0.666	0.588	0.914	2e-29
351721212	119	uncharacterized protein LOC100500073 [Gl	0.666	0.588	0.914	2e-29
118484883	124	unknown [Populus trichocarpa]	0.704	0.596	0.891	3e-29
224092720	70	predicted protein [Populus trichocarpa]	0.666	1.0	0.942	5e-29

>gi|255542760|ref|XP_002512443.1| 60S ribosomal protein L22, putative [Ricinus communis] gi|223548404|gb|EEF49895.1| 60S ribosomal protein L22, putative [Ricinus communis]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/81 (87%), Positives = 73/81 (90%), Gaps = 3/81 (3%)

Query: 10 MSRGSGGAAGGGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDT 69
          MSRGS  A   G KGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGD+
Sbjct: 1  MSRGSAAA---GVKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS 57

Query: 70 VTVTRDKTKITVLSDSNFSKR 90
          VTVTR K+KITV SDSNFSKR
Sbjct: 58 VTVTRGKSKITVASDSNFSKR 78

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638043|gb|ACU19336.1| unknown [Glycine max]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/81 (86%), Positives = 72/81 (88%), Gaps = 4/81 (4%)

Query: 10 MSRGSGGAAGGGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDT 69
          MSRGS  AA    KGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGAL DT
Sbjct: 1  MSRGSATAA----KGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALADT 56

Query: 70 VTVTRDKTKITVLSDSNFSKR 90
          +TVTR+KTKI V SDSNFSKR
Sbjct: 57 ITVTREKTKIIVTSDSNFSKR 77

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576805|ref|XP_003556520.1| PREDICTED: 60S ribosomal protein L22-2-like [Glycine max]

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/81 (86%), Positives = 72/81 (88%), Gaps = 4/81 (4%)

Query: 10 MSRGSGGAAGGGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDT 69
          MSRGS  AA    KGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGAL DT
Sbjct: 1  MSRGSATAA----KGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALADT 56

Query: 70 VTVTRDKTKITVLSDSNFSKR 90
          +TVTR+KTKI V SDSNFSKR
Sbjct: 57 ITVTREKTKIIVTSDSNFSKR 77

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482052|gb|ABK92957.1| unknown [Populus trichocarpa]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 67/74 (90%), Positives = 68/74 (91%)

Query: 17 AAGGGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDK 76
          A   G KGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTR+K
Sbjct: 4  ATAPGPKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTREK 63

Query: 77 TKITVLSDSNFSKR 90
           KITV SDSNFSKR
Sbjct: 64 NKITVTSDSNFSKR 77

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535057|ref|XP_003536065.1| PREDICTED: 60S ribosomal protein L22-2-like [Glycine max]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 69/81 (85%), Positives = 72/81 (88%), Gaps = 4/81 (4%)

Query: 10 MSRGSGGAAGGGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDT 69
          MSRGS  AA    KGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGD+
Sbjct: 1  MSRGSATAA----KGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS 56

Query: 70 VTVTRDKTKITVLSDSNFSKR 90
          +TV R+KTKI V SDSNFSKR
Sbjct: 57 ITVVREKTKIIVTSDSNFSKR 77

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484642|gb|ABK94193.1| unknown [Populus trichocarpa]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/74 (87%), Positives = 68/74 (91%)

Query: 17 AAGGGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDK 76
          A   GAKGKKKG TFT+DC KPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTR+K
Sbjct: 4  ATASGAKGKKKGVTFTVDCTKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTREK 63

Query: 77 TKITVLSDSNFSKR 90
          +KITV SDSNFSKR
Sbjct: 64 SKITVTSDSNFSKR 77

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726188|ref|NP_001236862.1| uncharacterized protein LOC100305544 [Glycine max] gi|255625861|gb|ACU13275.1| unknown [Glycine max]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/70 (91%), Positives = 68/70 (97%)

Query: 21 GAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKIT 80
          GAKGKKKGA+F IDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGD++TVTRDK+KIT
Sbjct: 3  GAKGKKKGASFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSITVTRDKSKIT 62

Query: 81 VLSDSNFSKR 90
          V SDSNFSKR
Sbjct: 63 VTSDSNFSKR 72

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721212|ref|NP_001236434.1| uncharacterized protein LOC100500073 [Glycine max] gi|255628971|gb|ACU14830.1| unknown [Glycine max]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/70 (91%), Positives = 68/70 (97%)

Query: 21 GAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKIT 80
          GAKGKKKGA+F IDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGD++TVTRDK+KIT
Sbjct: 3  GAKGKKKGASFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSITVTRDKSKIT 62

Query: 81 VLSDSNFSKR 90
          V SDSNFSKR
Sbjct: 63 VTSDSNFSKR 72

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484883|gb|ABK94308.1| unknown [Populus trichocarpa]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 67/74 (90%)

Query: 17 AAGGGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDK 76
          A   G KGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGD VTVTR+K
Sbjct: 4  ATAPGPKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDAVTVTREK 63

Query: 77 TKITVLSDSNFSKR 90
           KITV SDSNFSKR
Sbjct: 64 NKITVTSDSNFSKR 77

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092720|ref|XP_002334877.1| predicted protein [Populus trichocarpa] gi|222831911|gb|EEE70388.1| predicted protein [Populus trichocarpa]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/70 (94%), Positives = 67/70 (95%)

Query: 21 GAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKIT 80
          G KGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTR+K KIT
Sbjct: 1  GPKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTREKNKIT 60

Query: 81 VLSDSNFSKR 90
          V SDSNFSKR
Sbjct: 61 VTSDSNFSKR 70

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
TAIR|locus:2078107	124	AT3G05560 [Arabidopsis thalian	0.561	0.475	0.796	3.9e-21
TAIR|locus:2180260	124	AT5G27770 [Arabidopsis thalian	0.561	0.475	0.779	1e-20
TAIR|locus:2024715	127	AT1G02830 [Arabidopsis thalian	0.561	0.464	0.661	6e-16
RGD|621189	128	Rpl22 "ribosomal protein L22"	0.552	0.453	0.644	3.8e-14
UNIPROTKB|F1N9J4	127	RPL22 "60S ribosomal protein L	0.552	0.456	0.644	6.2e-14
UNIPROTKB|F1NXY7	134	RPL22 "60S ribosomal protein L	0.552	0.432	0.644	6.2e-14
UNIPROTKB|Q98TF8	128	RPL22 "60S ribosomal protein L	0.552	0.453	0.644	6.2e-14
UNIPROTKB|F1N301	128	RPL22 "Uncharacterized protein	0.552	0.453	0.644	6.2e-14
UNIPROTKB|P35268	128	RPL22 "60S ribosomal protein L	0.552	0.453	0.644	6.2e-14
UNIPROTKB|P67985	128	RPL22 "60S ribosomal protein L	0.552	0.453	0.644	6.2e-14

TAIR|locus:2078107 AT3G05560 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 47/59 (79%), Positives = 56/59 (94%)

Query:    30 TFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFS 88
             +FTIDC+KPV+DKIM+IASLEKFLQERIKVGGKAGALGD+VT+TR+K+KITV +D  FS
Sbjct:    17 SFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFS 75

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2180260 AT5G27770 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 46/59 (77%), Positives = 56/59 (94%)

Query:    30 TFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFS 88
             +FTIDC+KPV+DKIM+IASLEKFLQERIKVGGKAGALGD+V++TR+K+KITV +D  FS
Sbjct:    17 SFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFS 75

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2024715 AT1G02830 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 39/59 (66%), Positives = 51/59 (86%)

Query:    30 TFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFS 88
             +F IDC+KPV+D I++IA+LEKFLQERIKV GKAGALG++V++TR   KI V ++SNFS
Sbjct:    19 SFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNANSNFS 77

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

RGD|621189 Rpl22 "ribosomal protein L22" [Rattus norvegicus (taxid:10116)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 38/59 (64%), Positives = 44/59 (74%)

Query:    31 FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGD-TVTVTRDKTKITVLSDSNFS 88
             FT+DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITV S+  FS
Sbjct:    21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEEPFS 79

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA;ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0046632 "alpha-beta T cell differentiation" evidence=ISO

UNIPROTKB|F1N9J4 RPL22 "60S ribosomal protein L22" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 38/59 (64%), Positives = 44/59 (74%)

Query:    31 FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGD-TVTVTRDKTKITVLSDSNFS 88
             FT+DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITV S+  FS
Sbjct:    20 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFS 78

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0046632 "alpha-beta T cell differentiation" evidence=IEA

UNIPROTKB|F1NXY7 RPL22 "60S ribosomal protein L22" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 38/59 (64%), Positives = 44/59 (74%)

Query:    31 FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGD-TVTVTRDKTKITVLSDSNFS 88
             FT+DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITV S+  FS
Sbjct:    27 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFS 85

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0046632 "alpha-beta T cell differentiation" evidence=IEA

UNIPROTKB|Q98TF8 RPL22 "60S ribosomal protein L22" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 38/59 (64%), Positives = 44/59 (74%)

Query:    31 FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGD-TVTVTRDKTKITVLSDSNFS 88
             FT+DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITV S+  FS
Sbjct:    21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFS 79

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|F1N301 RPL22 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 38/59 (64%), Positives = 44/59 (74%)

Query:    31 FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGD-TVTVTRDKTKITVLSDSNFS 88
             FT+DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITV S+  FS
Sbjct:    21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFS 79

GO:0046632 "alpha-beta T cell differentiation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P35268 RPL22 "60S ribosomal protein L22" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 38/59 (64%), Positives = 44/59 (74%)

Query:    31 FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGD-TVTVTRDKTKITVLSDSNFS 88
             FT+DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITV S+  FS
Sbjct:    21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFS 79

GO:0003723 "RNA binding" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0046632 "alpha-beta T cell differentiation" evidence=IEA

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|P67985 RPL22 "60S ribosomal protein L22" [Sus scrofa (taxid:9823)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 38/59 (64%), Positives = 44/59 (74%)

Query:    31 FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGD-TVTVTRDKTKITVLSDSNFS 88
             FT+DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITV S+  FS
Sbjct:    21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFS 79

GO:0008201 "heparin binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FE58	RL223_ARATH	No assigned EC number	0.7741	0.5904	0.5	yes	no
Q9M9W1	RL222_ARATH	No assigned EC number	0.7777	0.7333	0.6209	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.2080.1.1 annotation not avaliable (70 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	105
pfam01776	112	pfam01776, Ribosomal_L22e, Ribosomal L22e protein	5e-35
PTZ00198	122	PTZ00198, PTZ00198, 60S ribosomal protein L22; Pro	4e-27

>gnl|CDD|201965 pfam01776, Ribosomal_L22e, Ribosomal L22e protein family

 Score =  115 bits (291), Expect = 5e-35
 Identities = 47/78 (60%), Positives = 54/78 (69%), Gaps = 2/78 (2%)

Query: 24 GKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLS 83
           KK    F IDC+ PVED I D+A+ EKFL ERIKV GK G LG+ VT+ RDK KITV S
Sbjct: 1  KKKVTLKFVIDCSHPVEDGIFDVANFEKFLHERIKVNGKTGNLGNKVTIERDKNKITVTS 60

Query: 84 DSNFSKRYL--LLKRLLK 99
          +  FSKRYL  L K+ LK
Sbjct: 61 EIPFSKRYLKYLTKKYLK 78

Length = 112

>gnl|CDD|173474 PTZ00198, PTZ00198, 60S ribosomal protein L22; Provisional

 Score = 95.9 bits (239), Expect = 4e-27
 Identities = 43/77 (55%), Positives = 53/77 (68%), Gaps = 2/77 (2%)

Query: 25 KKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSD 84
          KKK   F IDC  P ED I+D++  E+FLQ+RIKV GK G LG+ V V+R+K KITV + 
Sbjct: 15 KKKKKKFKIDCTIPAEDGIIDLSGFEQFLQDRIKVDGKTGNLGNKVRVSREKNKITVTTT 74

Query: 85 SNFSKRYL--LLKRLLK 99
            FSKRYL  L K+ LK
Sbjct: 75 IPFSKRYLKYLTKKYLK 91

Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
PTZ00198	122	60S ribosomal protein L22; Provisional	100.0
PF01776	112	Ribosomal_L22e: Ribosomal L22e protein family; Int	100.0
KOG3434	125	consensus 60S ribosomal protein L22 [Translation,	100.0

>PTZ00198 60S ribosomal protein L22; Provisional

Probab=100.00  E-value=6.6e-45  Score=264.50  Aligned_cols=86  Identities=50%  Similarity=0.757  Sum_probs=80.3

Q ss_pred             CCCCCCCccceeEEEEeeecccCCCccchhHHHHHhhcceeeccccCCCCCeEEEEeeCCeEEEEecccccceee--hhh
Q 043767           18 AGGGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFSKRYL--LLK   95 (105)
Q Consensus        18 ~~~~~k~kK~~~kF~IDCt~PveD~I~d~a~FEkFL~erIKVnGKtgnLg~~V~i~r~k~kI~V~s~~pfSKRYL--LTK   95 (105)
                      +...+.++|..++|+||||+||||+|||+++||+||||||||||++||||+.|+|++++++|+|+|++|||||||  |||
T Consensus         8 ~~~~~~~kk~~~kF~IDCt~PveD~I~d~a~fekfL~erIKV~GK~gnLg~~V~v~~~k~ki~V~s~~~FSKRYLKYLTK   87 (122)
T PTZ00198          8 RKRQKQVKKKKKKFKIDCTIPAEDGIIDLSGFEQFLQDRIKVDGKTGNLGNKVRVSREKNKITVTTTIPFSKRYLKYLTK   87 (122)
T ss_pred             ccccchhcccceEEEEEcCCcccCCcccHHHHHHHHHHhEEECCCcCccCCcEEEEEECCEEEEEecccccHHHHHHHHH
Confidence            444355678889999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             hhhccccc
Q 043767           96 RLLKLPCA  103 (105)
Q Consensus        96 KyLKK~~~  103 (105)
                      ||||||+-
T Consensus        88 KyLKK~~L   95 (122)
T PTZ00198         88 KYLKKKQL   95 (122)
T ss_pred             HHHhhhhh
Confidence            99999863

>PF01776 Ribosomal_L22e: Ribosomal L22e protein family; InterPro: IPR002671 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=3.8e-43  Score=251.88  Aligned_cols=80  Identities=63%  Similarity=0.897  Sum_probs=70.3

Q ss_pred             CccceeEEEEeeecccCCCccchhHHHHHhhcceeeccccCCCCCeEEEEeeCCeEEEEecccccceee--hhhhhhccc
Q 043767           24 GKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFSKRYL--LLKRLLKLP  101 (105)
Q Consensus        24 ~kK~~~kF~IDCt~PveD~I~d~a~FEkFL~erIKVnGKtgnLg~~V~i~r~k~kI~V~s~~pfSKRYL--LTKKyLKK~  101 (105)
                      ++|+.++|+||||+||||+|||+++||+||||||||||++||||+.|+|++++++|+|+|++|||||||  ||||||||+
T Consensus         1 kkk~~~kF~IDCt~pveD~I~d~~~fe~fL~erIKV~gk~gnlg~~V~i~~~~~ki~V~s~v~fsKrYLKYLTKKyLKK~   80 (112)
T PF01776_consen    1 KKKQTLKFTIDCTHPVEDGIMDPADFEKFLQERIKVNGKTGNLGNKVTISRDKNKITVTSEVPFSKRYLKYLTKKYLKKN   80 (112)
T ss_dssp             --EEEEEEEEE-HHSSSTS---SHHHHHHHHHHHHHHSCSSSSTTTEEEEE-SSEEEEEESSS-SHHHHHHHHHHHHTTS
T ss_pred             CCcccEEEEEEeCCcccCceecHHHHHHHHHHheEeCCcccccCCeEEEEecCCEEEEEecccccHHHHHHHHHHHHhhc
Confidence            477889999999999999999999999999999999999999999999999999999999999999999  999999998


Q ss_pred             cc
Q 043767          102 CA  103 (105)
Q Consensus       102 ~~  103 (105)
                      +-
T Consensus        81 ~L   82 (112)
T PF01776_consen   81 NL   82 (112)
T ss_dssp             SS
T ss_pred             ch
Confidence            74

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L22e forms part of the 60S ribosomal subunit []. This family is found in eukaryotes. Rattus norvegicus (Rat) L22 is related to ribosomal proteins from other eukaryotes and is identical in amino acid sequence to human EAP, the EBER 1 (Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) encoded RNA) associated protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1D_M 4A1B_M 4A19_M 4A18_M 3IZR_W 3IZS_W.

>KOG3434 consensus 60S ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.2e-41  Score=246.02  Aligned_cols=84  Identities=62%  Similarity=0.871  Sum_probs=79.5

Q ss_pred             CCCCCccceeEEEEeeecccCCCccchhHHHHHhhcceeeccccCCCCCeEEEEeeCCeEEEEecccccceee--hhhhh
Q 043767           20 GGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFSKRYL--LLKRL   97 (105)
Q Consensus        20 ~~~k~kK~~~kF~IDCt~PveD~I~d~a~FEkFL~erIKVnGKtgnLg~~V~i~r~k~kI~V~s~~pfSKRYL--LTKKy   97 (105)
                      .+.+++|..++|+|||++||||+|||+|+||+|||||||||||+||||+.|+|++.+++|+|+|+++||+|||  |||||
T Consensus         9 ~~~~~kKv~~~f~iDct~p~eDgI~d~A~fe~fLqerIKv~GK~gnLg~vv~ie~~kskitV~s~~~Fs~rylKyltkkY   88 (125)
T KOG3434|consen    9 KTAKKKKVHLRFTIDCTNPVEDGILDIADLEKFLQERIKVNGKVGNLGNVVTIERSKSKITVVSTVHFSKRYLKYLTKKY   88 (125)
T ss_pred             hccccceeEEEEEEEecCccccccccHHHHHHHHHHHhhhcccccccCCeEEEecCCcEEEEEecCCccHHHHHHHHHHH
Confidence            3356788899999999999999999999999999999999999999999999999999999999999999999  99999


Q ss_pred             hccccc
Q 043767           98 LKLPCA  103 (105)
Q Consensus        98 LKK~~~  103 (105)
                      |||++-
T Consensus        89 Lkk~~L   94 (125)
T KOG3434|consen   89 LKKNNL   94 (125)
T ss_pred             HhhhhH
Confidence            999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	105
3izr_W	130	Localization Of The Large Subunit Ribosomal Protein		5e-22
4a18_M	118	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-11
3izs_W	121	Localization Of The Large Subunit Ribosomal Protein		2e-10

>pdb|3IZR|W Chain W, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 130

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
Query: 30 TFTIDCAKPVEDKIMDIASLEKFLQERIKV-GGKAGALGDTVTVTRDKTKITVLSDSNFS 88
          +F IDC+KPVEDKIM+IASLEKFLQERIKV GGKAG LGD+VTVTRDKTK+TV SD  FS
Sbjct: 22 SFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKTKVTVTSDGAFS 81

>pdb|4A18|M Chain M, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 118

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 31 FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFS 88
          F IDC++PVEDK++ I    +FL+ +IKVGGK G LG+ +T++ D  KI V S   FS
Sbjct: 17 FKIDCSQPVEDKVILIGEFAEFLKSKIKVGGKLGNLGENITISNDDKKINVQSTIPFS 74

>pdb|3IZS|W Chain W, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 121

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 30 TFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFS 88
          TFT+D + P E+ + D AS  K+L + IKV G  G LG+ VTVT D T +TV+S + FS
Sbjct: 14 TFTVDVSSPTENGVFDPASYAKYLIDHIKVEGAVGNLGNAVTVTEDGTVVTVVSTAKFS 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
3iz5_W	130	60S ribosomal protein L22 (L22E); eukaryotic ribos	2e-31
3izc_W	121	60S ribosomal protein RPL22 (L22E); eukaryotic rib	3e-30
4a18_M	118	RPL22, ribosomal protein L22; ribosome, eukaryotic	4e-30

>4a18_M RPL22, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_M 4a1b_M 4a1d_M Length = 118

 Score =  103 bits (257), Expect = 4e-30
 Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 16 GAAGGGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRD 75
                 + KK    F IDC++PVEDK++ I    +FL+ +IKVGGK G LG+ +T++ D
Sbjct: 2  SFRKKTKQVKKVNLGFKIDCSQPVEDKVILIGEFAEFLKSKIKVGGKLGNLGENITISND 61

Query: 76 KTKITVLSDSNFSKRYL--LLKRLLK 99
            KI V S   FSKRYL  L K+ LK
Sbjct: 62 DKKINVQSTIPFSKRYLKYLTKKYLK 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
3iz5_W	130	60S ribosomal protein L22 (L22E); eukaryotic ribos	100.0
3izc_W	121	60S ribosomal protein RPL22 (L22E); eukaryotic rib	100.0
4a18_M	118	RPL22, ribosomal protein L22; ribosome, eukaryotic	100.0

>4a18_M RPL22, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_M 4a1b_M 4a1d_M

Probab=100.00  E-value=2.3e-45  Score=264.55  Aligned_cols=81  Identities=48%  Similarity=0.769  Sum_probs=76.2

Q ss_pred             CCccceeEEEEeeecccCCCccchhHHHHHhhcceeeccccCCCCCeEEEEeeCCeEEEEecccccceee--hhhhhhcc
Q 043767           23 KGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTRDKTKITVLSDSNFSKRYL--LLKRLLKL  100 (105)
Q Consensus        23 k~kK~~~kF~IDCt~PveD~I~d~a~FEkFL~erIKVnGKtgnLg~~V~i~r~k~kI~V~s~~pfSKRYL--LTKKyLKK  100 (105)
                      +.+|+.++|+||||+||||+|||+++||+||||||||||++||||+.|+|++++++|+|+|++|||||||  ||||||||
T Consensus         9 ~~kk~~~kF~iDct~PveD~I~d~a~fekfL~erIKV~gk~gnLg~~V~i~~~~~ki~V~s~~~fSKRYLKYLTKKyLKK   88 (118)
T 4a18_M            9 QVKKVNLGFKIDCSQPVEDKVILIGEFAEFLKSKIKVGGKLGNLGENITISNDDKKINVQSTIPFSKRYLKYLTKKYLKK   88 (118)
T ss_dssp             ---CCCEEEEEECHHHHHTTCCCHHHHHHHHHHHCCBTTBSSCCTTTEEEEECSSEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred             ccceeeEEEEEEccCcccCceecHHHHHHHHHHHhhccCcccccCCeEEEEEcCCEEEEEeccccchHHHHHHHHHHhhh
Confidence            4568889999999999999999999999999999999999999999999999999999999999999999  99999999


Q ss_pred             ccc
Q 043767          101 PCA  103 (105)
Q Consensus       101 ~~~  103 (105)
                      |+-
T Consensus        89 ~~L   91 (118)
T 4a18_M           89 QDL   91 (118)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            873

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00