Citrus Sinensis ID: 043802

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-
Protein Sequence
DLMDTFGQNDVSDADDDDVINNLHTCINLIASAIDEGTGQWVREHNKGATQSYSDDEEDFIPDNNHSVTHLEGYCSDTDATVLYIGTIPRCREIHHTTGFLFEDNVHHKMIMRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFIVKDISLTHACHIKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPEWKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFHRMFVCFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLVQFPDPPVKDLFWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVWVKCTNVTIMLTVYLRNSFAKFFSLSIADRFAAISSFIADTYERRRLSGWNWLRNKITPSVQQQIRNRVIQGQQIRILYSTGRQMKVEDTDSMTYEVDITSMTCTCRLWQLSGIPCSHACRCLEELGENIEDNVHQLFSMDQYRTTYASGMDKLPERSKWQLKLCDEILPPSALDNTSFIADDLYDQTLVPTQNDTKETHVEASGAKVSVDNKFVSSSIYVYLQYANISNSYLEHLHLS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHcccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHcccEEEEEEEEcccEEEEEEEccccccEEEEEEEccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHEEEEEEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccEEEEEEEccccHHHHHccccEEEEEccEEEEEEEEEEEEEEEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHccccEEcccccccEEcccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccEEEEEEEcccEEEEEEccccEEEEEEEcEEEEcccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEcEEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHcccHcEHHHHHHccccccccccccccccccccccccccccccccHHHcccccHcccccccccccccccccccccccccccccccccccEEEcEEcccHHHHHHHHHHHHHHccccEEEEEccccEEEEEEccccccEEEEEEEcccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHEEHHHHHHHHHHccccEEEEEcEEEccccccEEEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccEEEEcccEEEEEEEccccEEEEEEcccEEcccccccccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEcccccccHcEEEEHEccccHHHHHHHHcccc
Coil and Loop (DISEMBL)
dlmdtfgqndvsdaddddvINNLHTCINLIASAidegtgqwvrehnkgatqsysddeedfipdnnhsvthlegycsdtdatVLYIgtiprcreihhttgflfednvHHKMIMrqgqlfrdEFQFRRAVEVFSLREGFKLciiengpdliHLECSSLRCdwkivgakistgnsfivKDISLTHACHIKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFgvvcpewkIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINshnivvletkdedsgcskIFHRMfvcfhepaftfkmncrnfiavdgwvINSVHKSVMLVAAAldgnndilpIALAEVEIEDFTSWYFFLNNLNRALRRengeglciitdgdngvLEAIedciplahcrqCCCSIYnqmlvqfpdppvkdLFWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVWVKCTNVTIMLTVYLRNSFAKFFSLSIADRFAAISSFIADTYERRRLSGWnwlrnkitpsVQQQIRNRVIQGQQIRILYSTgrqmkvedtdsmtyEVDITSmtctcrlwqlsgipcshaCRCLEELGENIEDNVHQLFSMDQYRTTYASgmdklpersKWQLKLcdeilppsaldntsfiaddlydqtlvptqndtkethveasgakvsvdnkfvSSSIYVYLQYANISNSYLEHLHLS
Flexible Loop (DISEMBL)
dlmdtfgqndvsdaddddVINNLHTCINLIASAIDEGTGQWVREHNKGAtqsysddeedFIPDNNHSVTHLEGYCSDTDATVLYIGTIPRCREIHHTTGFLFEDNVHHKMIMRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFIVKDISLTHACHIKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPEWKIFKAEKRAQQllgkdhvqgYTRLTQlkteierinshnivvletKDEDSGCSKIFHRMFVCFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLVQFPDPPVKDLFWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVWVKCTNVTIMLTVYLRNSFAKFFSLSIADRFAAISSFIADTYERRRLSGWNWLRNKITPSVQQQIRNRVIQGQQIRIlystgrqmkvedtDSMTYEVDITSMTCTCRLWQLSGIPCSHACRCLEELGENIEDNVHQLFSMDQYRTTYASGMDKLPERSKWQLKLCDEILPPSALDNTSFIADDLYDQTLVPTQNDTKethveasgakvsvdnkFVSSSIYVYLQYANISNSYLEHLHLS
Low Complexity Region (SEG)
DLMDTFGQNdvsdaddddvINNLHTCINLIASAIDEGTGQWVREHNKGATQSYSDDEEDFIPDNNHSVTHLEGYCSDTDATVLYIGTIPRCREIHHTTGFLFEDNVHHKMIMRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFIVKDISLTHACHIKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPEWKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFHRMFVCFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFlnnlnralrrENGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLVQFPDPPVKDLFWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVWVKCTNVTIMLTVYLRNSFAKFFSLSIADRFAAISSFIADTYERRRLSGWNWLRNKITPSVQQQIRNRVIQGQQIRILYSTGRQMKVEDTDSMTYEVDITSMTCTCRLWQLSGIPCSHACRCLEELGENIEDNVHQLFSMDQYRTTYASGMDKLPERSKWQLKLCDEILPPSALDNTSFIADDLYDQTLVPTQNDTKETHVEASGAKVSVDNKFVSSSIYVYLQYANISNSYLEHLHLS
Disordered region (IsUnstruct)
*****************DVINNLHTCINLIASAIDEGTGQWVR*********************NHSVTHLEGYCSDTDATVLYIGTIPRCREIHHTTGFLFEDNVHHKMIMRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFIVKDISLTHACHIKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPEWKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFHRMFVCFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLVQFPDPPVKDLFWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVWVKCTNVTIMLTVYLRNSFAKFFSLSIADRFAAISSFIADTYERRRLSGWNWLRNKITPSVQQQIRNRVIQGQQIRILYSTGRQMKVEDTDSMTYEVDITSMTCTCRLWQLSGIPCSHACRCLEELGENIEDNVHQLFSMDQYRTTYASGMDKLPERSKWQLKLCDEILPPSALDNTSFIADDLYDQTLVP***************KVSVDNKFVSSSIYVYLQYANISNSYLEH****
Disordered Region (DISOPRED)
*************************************************************************************************TGFLFEDNVHHKMIMRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFIVKDISLTHACHIKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPEWKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFHRMFVCFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLVQFPDPPVKDLFWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVWVKCTNVTIMLTVYLRNSFAKFFSLSIADRFAAISSFIADTYERRRLSGWNWLRNKITPSVQQQIRNRVIQGQQIRILYSTGRQMKVEDTDSMTYEVDITSMTCTCRLWQLSGIPCSHACRCLEELGENIEDNVHQLFSMDQYRTTYASGMDKLPERSKWQLKLCDEI*********************************************FVSSSIYVYLQYANISNSYLEHLHL*
Disordered Region (DISEMBL)
********NDVSDADDDDVINNLHTCINLIASAIDEGTGQWVREHN*********DEEDFIPDNNHSVTHLEGYCSDTDATVLYIGTIPRCREIHHTTGFLFEDNVHHKMIMRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFIVKDISLTHACHIKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPEWKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFHRMFVCFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLVQFPDPPVKDLFWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVWVKCTNVTIMLTVYLRNSFAKFFSLSIADRFAAISSFIADTYERRRLSGWNWLRNKITPSVQQQIRNRVIQGQQIRILYSTGRQMKVEDTDSMTYEVDITSMTCTCRLWQLSGIPCSHACRCLEELGENIEDNVHQLFSMDQYRTTYASGMDKLPERSKWQLKLCDEILPPSALDNTSFIADDLYDQTLVPTQNDTKETHVEASGAKVSVDNKFVSSSIYVYLQYANISNSYLEHLHLS
Disordered Region (DISPRO)
**********VSDADDDDVINNLHTCINLIASAIDE*************************************************************TGFLFEDNVHHKMIMRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFIVKDISLTHACHIKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPEWKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFHRMFVCFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLVQFPDPPVKDLFWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVWVKCTNVTIMLTVYLRNSFAKFFSLSIADRFAAISSFIADTYERRRLSGWNWLRNKITPSVQQQIRNRVIQGQQIRILYSTGRQMKVEDTDSMTYEVDITSMTCTCRLWQLSGIPCSHACRCLEELGENIEDNVHQLFSMDQYRTTYASGMDKLPERSKWQLKLCDEILPPSA***********************KETHVEASGAKVSVDNKFVSSSIYVYLQYANISNSYLEHLHLS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DLMDTFGQNDVSDADDDDVINNLHTCINLIASAIDEGTGQWVREHNKGATQSYSDDEEDFIPDNNHSVTHLEGYCSDTDATVLYIGTIPRCREIHHTTGFLFEDNVHHKMIMRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFIVKDISLTHACHIKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPEWKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFHRMFVCFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLVQFPDPPVKDLFWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVWVKCTNVTIMLTVYLRNSFAKFFSLSIADRFAAISSFIADTYERRRLSGWNWLRNKITPSVQQQIRNRVIQGQQIRILYSTGRQMKVEDTDSMTYEVDITSMTCTCRLWQLSGIPCSHACRCLEELGENIEDNVHQLFSMDQYRTTYASGMDKLPERSKWQLKLCDEILPPSALDNTSFIADDLYDQTLVPTQNDTKETHVEASGAKVSVDNKFVSSSIYVYLQYANISNSYLEHLHLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	701
356565507	748	PREDICTED: uncharacterized protein LOC10	0.704	0.660	0.251	2e-48
356548025	748	PREDICTED: uncharacterized protein LOC10	0.704	0.660	0.249	5e-47
449485027	844	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.700	0.581	0.248	5e-46
449441646	850	PREDICTED: uncharacterized protein LOC10	0.700	0.577	0.246	9e-46
225450448	768	PREDICTED: uncharacterized protein LOC10	0.686	0.626	0.240	9e-46
147780251	1076	hypothetical protein VITISV_037761 [Viti	0.684	0.446	0.243	2e-45
242039793	934	hypothetical protein SORBIDRAFT_01g02304	0.720	0.540	0.269	3e-45
224068699	573	predicted protein [Populus trichocarpa]	0.731	0.895	0.242	6e-45
242044494	1036	hypothetical protein SORBIDRAFT_02g02302	0.726	0.491	0.258	4e-44
222626119	974	hypothetical protein OsJ_13260 [Oryza sa	0.716	0.515	0.276	9e-44

>gi|356565507|ref|XP_003550981.1| PREDICTED: uncharacterized protein LOC100809446 [Glycine max]

 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 138/549 (25%), Positives = 251/549 (45%), Gaps = 55/549 (10%)

Query: 116 QLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFIV 175
           Q F    +FR A+  +S+  GF     +N    + ++C S  C W++  +++ST     +
Sbjct: 186 QRFNSFSEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRVYASRLSTTQLICI 245

Query: 176 KDISLTHACH---IKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPEWK 232
           K +   H C    +K  ++ T  W+ +      K +P     ++   I + +G+     +
Sbjct: 246 KKMHCDHTCEGSAVKAGYRATRGWVGSIIKEKLKDSPNYKPKDIADDIKREYGIQLNYSQ 305

Query: 233 IFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFHRMFVC 292
            ++A++ A++ L   +++ YT+L     +I+  N  +     TK++ S     FHR+FV 
Sbjct: 306 AWRAKEIAREQLQGSYIEAYTQLPLFCEKIKETNPGSFATFTTKEDSS-----FHRLFVA 360

Query: 293 FHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWY 352
           FH     F++ CR  I +D   +NS ++  +L A A+DGN+ I P+A A V+ E   +W 
Sbjct: 361 FHASTSGFQLGCRPLIFLDTTPLNSKYQGELLAATAVDGNDGIFPVAFAVVDTETEDNWR 420

Query: 353 FFLNNLNRALRRENGEGLCIITDGDNGVLEAIEDCIPL---AHC-RQCCCSIYNQMLVQF 408
           +FL  L   L     E +  + D  NG+ +++ D       ++C R     +   +  QF
Sbjct: 421 WFLQELK--LATSTSEKITFVADFQNGLKKSLSDVFEKCYHSYCLRHLAEKLNKDLKGQF 478

Query: 409 PDPPVKDL---FWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVWVK 465
                + +   F+AA  +     F R ++ I+  S E + W+ Q++ + WA         
Sbjct: 479 SHEARRFMVNDFYAAAYAPKLETFERSVENIKGISPEAYDWVIQSEPEHWA--------- 529

Query: 466 CTNVTIMLTVY--LRNSFAKFF--------SLSIADRFAAISSFIADTYERRRLSGWNWL 515
             N       Y  L ++F + F         L I     A+   + +T   RR+    W+
Sbjct: 530 --NAFFNGARYNLLSSNFGQQFYSWVSEAHELPITQMIDALRGKMMETIYTRRVESNQWM 587

Query: 516 RNKITPSVQQQIRNRVIQGQQIRILYSTGRQMKV--EDTDSMTYEVDITSMTCTCRLWQL 573
             K+TPS ++ ++   +    +++L+S G   +V  E  D     VDI +  C+C+ WQL
Sbjct: 588 -TKLTPSKEELLQKETLVAPSLQVLFSQGSTFEVRGESVDI----VDIDNWDCSCKGWQL 642

Query: 574 SGIPCSHACRCLEELGENIEDNVHQLFSMDQYRTTYASGMDKLPERSKWQLKLCDEILPP 633
           +G+PC HA    E +G +  D   + F+++ YR TYA  +  +P   K          PP
Sbjct: 643 TGVPCCHAIAVFECVGRSPYDYCSRYFTVENYRLTYAESIHPVPNVDK----------PP 692

Query: 634 SALDNTSFI 642
              ++TS +
Sbjct: 693 VQGESTSLV 701

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548025|ref|XP_003542404.1| PREDICTED: uncharacterized protein LOC100776940 [Glycine max]

 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 137/549 (24%), Positives = 251/549 (45%), Gaps = 55/549 (10%)

Query: 116 QLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFIV 175
           Q F    +FR A+  +S+  GF     +N    + ++C S  C W++  +K+ST     +
Sbjct: 186 QRFNSFSEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRVYASKLSTTQLICI 245

Query: 176 KDISLTHACH---IKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPEWK 232
           K +   H C    +K  ++ T  W+ +      K +P     ++   I + +G+     +
Sbjct: 246 KKMHCNHTCEGSVVKAGYRATRGWVGSIIKEKLKDSPNYKPKDIADDIKREYGIQLNYSQ 305

Query: 233 IFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFHRMFVC 292
            ++A++ A++ L   + + YT+L     +I+  N  +     TK++ S     FHR+FV 
Sbjct: 306 AWRAKEIAREQLQGSYKEAYTQLPLFCEKIKETNPGSFATFTTKEDSS-----FHRLFVA 360

Query: 293 FHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWY 352
           FH     F++ CR  I +D   +NS ++  +L A ++DGN+ I P+A A V+ E   +W+
Sbjct: 361 FHASISGFQLGCRPLIFLDRTPLNSKYQGELLAAISVDGNDGIFPVAFAVVDTETEDNWH 420

Query: 353 FFLNNLNRALRRENGEGLCIITDGDNGVLEAIEDCIPL---AHC-RQCCCSIYNQMLVQF 408
           +FL  L   L     E +  + D  NG+ +++ D       ++C R     +   +  QF
Sbjct: 421 WFLQELK--LATSTSEQITFVADFQNGLKKSLSDVFEKCYHSYCLRHLAEKLNKDLKGQF 478

Query: 409 PDPPVKDL---FWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVWVK 465
                + +   F+AA  +     F R I+ I+  S E + W+ Q++ + WA         
Sbjct: 479 SHEARRFMVNDFYAAAYAPKLETFERSIENIKGISPEAYDWVIQSEPEHWA--------- 529

Query: 466 CTNVTIMLTVY--LRNSFAKFF--------SLSIADRFAAISSFIADTYERRRLSGWNWL 515
             N       Y  L ++F + F         L I     A+   + +T   R++    W+
Sbjct: 530 --NAFFNGARYNLLSSNFGQQFYSWVSEAHELPITQMIDALRGKMMETIYTRQVESNQWM 587

Query: 516 RNKITPSVQQQIRNRVIQGQQIRILYSTGRQMKV--EDTDSMTYEVDITSMTCTCRLWQL 573
             K+TPS ++ ++   +    +++L+S G   +V  E  D     VDI +  C+C+ WQL
Sbjct: 588 -TKLTPSKEELLQKERLVAHSLQVLFSQGSTFEVRGESVDI----VDIDNWDCSCKGWQL 642

Query: 574 SGIPCSHACRCLEELGENIEDNVHQLFSMDQYRTTYASGMDKLPERSKWQLKLCDEILPP 633
           +G+PC HA    E +G +  D   + F+++ YR TYA  +  +P   K          PP
Sbjct: 643 TGVPCCHAIAVFECVGRSPYDYCSRYFTVENYRLTYAESIHPVPNVDK----------PP 692

Query: 634 SALDNTSFI 642
              ++T+ +
Sbjct: 693 VQGESTALV 701

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485027|ref|XP_004157051.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101228329 [Cucumis sativus]

 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 127/512 (24%), Positives = 240/512 (46%), Gaps = 21/512 (4%)

Query: 116 QLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFIV 175
           Q F    +FR A+  +S+  GF     +N    + ++C    C W+I  +++ST     +
Sbjct: 282 QRFNSFSEFREALHKYSIAHGFAYRYKKNDSHRVTVKCKYQGCPWRIYASRLSTTQLICI 341

Query: 176 KDISLTHACH---IKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPEWK 232
           K ++  H+C     K  ++ T  W+        K +P     ++   I + +G+     +
Sbjct: 342 KKMNTHHSCEGAAAKAGYRATRGWVGNIIKEKLKVSPNYKPKDIADDIKREYGIQLNYSQ 401

Query: 233 IFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFHRMFVC 292
            ++A++ A++ L   + + Y +L     +I+  N  ++    TKD+ S     FHR+FV 
Sbjct: 402 AWRAKEIAREQLQGSYKEAYNQLPYFCEKIKETNPGSVASFTTKDDSS-----FHRLFVS 456

Query: 293 FHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWY 352
           FH     F+  CR  + +D   +NS ++   L A A+DG + I P A A V+ E   +W+
Sbjct: 457 FHASISGFQQGCRPLLFLDSTPLNSKYQGFFLXATAVDGEDAIFPAAFAVVDAETEENWH 516

Query: 353 FFLNNLNRALRRENGEGLCIITDGDNGV---LEAIEDCIPLAHC-RQCCCSIYNQMLVQF 408
           +FL  L  A++R   E +  + D  NG+   L  I D    ++C R     + N +  QF
Sbjct: 517 WFLLELKSAVKR--SEQITFVADFQNGLNKSLGEIFDKSYHSYCLRHLAEKLNNDLKGQF 574

Query: 409 PDPPVKDL---FWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVWVK 465
                + +   F+AA  +T    F R  + I+  S + + W+ Q++ + WA +      +
Sbjct: 575 SHEARRFMINDFYAAALATKLEDFQRCAESIKGISPDAYNWIIQSEPEHWA-NAFFGGAR 633

Query: 466 CTNVTIMLTVYLRNSFAKFFSLSIADRFAAISSFIADTYERRRLSGWNWLRNKITPSVQQ 525
             ++T        +S ++   L I      +   + +T   RR+    W+  K+TP+ ++
Sbjct: 634 YNHITSNFGQQFYSSISEAHELPITQMIDVLRGKMMETIYSRRVESDQWV-TKLTPTNEE 692

Query: 526 QIRNRVIQGQQIRILYSTGRQMKVEDTDSMTYEVDITSMTCTCRLWQLSGIPCSHACRCL 585
           +++  +   +  ++  S G   +V       Y VD+ +  C+C+ WQL+G+PC HA   +
Sbjct: 693 KLQKEISIARSFQVSLSHGNIFEVRGES--VYSVDVDNWDCSCKAWQLTGLPCCHAIAVI 750

Query: 586 EELGENIEDNVHQLFSMDQYRTTYASGMDKLP 617
           E +G +  D   + F+++ YR TYA  +  +P
Sbjct: 751 ECIGRSPYDYCPRYFTVESYRLTYAESIHPIP 782

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441646|ref|XP_004138593.1| PREDICTED: uncharacterized protein LOC101203713 [Cucumis sativus]

 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 126/512 (24%), Positives = 239/512 (46%), Gaps = 21/512 (4%)

Query: 116 QLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFIV 175
           Q F    +FR A+  +S+  GF     +N    + ++C    C W+I  +++ST     +
Sbjct: 288 QRFNSFSEFREALHKYSIAHGFAYRYKKNDSHRVTVKCKYQGCPWRIYASRLSTTQLICI 347

Query: 176 KDISLTHACH---IKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPEWK 232
           K ++  H+C     K  ++ T  W+        K +P     ++   I + +G+     +
Sbjct: 348 KKMNTHHSCEGAAAKAGYRATRGWVGNIIKEKLKVSPNYKPKDIADDIKREYGIQLNYSQ 407

Query: 233 IFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFHRMFVC 292
            ++A++ A++ L   + + Y +L     +I+  N  ++    TKD+ S     FHR+FV 
Sbjct: 408 AWRAKEIAREQLQGSYKEAYNQLPYFCEKIKETNPGSVASFTTKDDSS-----FHRLFVS 462

Query: 293 FHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWY 352
           FH     F+  CR  + +D   +NS ++     A A+DG + I P A A V+ E   +W+
Sbjct: 463 FHASISGFQQGCRPLLFLDSTPLNSKYQGFFFTATAVDGEDAIFPAAFAVVDAETEENWH 522

Query: 353 FFLNNLNRALRRENGEGLCIITDGDNGV---LEAIEDCIPLAHC-RQCCCSIYNQMLVQF 408
           +FL  L  A++R   E +  + D  NG+   L  I D    ++C R     + N +  QF
Sbjct: 523 WFLLELKSAVKR--SEQITFVADFQNGLNKSLGEIFDKSYHSYCLRHLAEKLNNDLKGQF 580

Query: 409 PDPPVKDL---FWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVWVK 465
                + +   F+AA  +T    F R  + I+  S + + W+ Q++ + WA +      +
Sbjct: 581 SHEARRFMINDFYAAALATKLEDFQRCAESIKGISPDAYNWIIQSEPEHWA-NAFFGGAR 639

Query: 466 CTNVTIMLTVYLRNSFAKFFSLSIADRFAAISSFIADTYERRRLSGWNWLRNKITPSVQQ 525
             ++T        +S ++   L I      +   + +T   RR+    W+  K+TP+ ++
Sbjct: 640 YNHITSNFGQQFYSSISEAHELPITQMIDVLRGKMMETIYSRRVESDQWV-TKLTPTNEE 698

Query: 526 QIRNRVIQGQQIRILYSTGRQMKVEDTDSMTYEVDITSMTCTCRLWQLSGIPCSHACRCL 585
           +++  +   +  ++  S G   +V       Y VD+ +  C+C+ WQL+G+PC HA   +
Sbjct: 699 KLQKEISIARSFQVSLSHGNIFEVRGES--VYSVDVDNWDCSCKAWQLTGLPCCHAIAVI 756

Query: 586 EELGENIEDNVHQLFSMDQYRTTYASGMDKLP 617
           E +G +  D   + F+++ YR TYA  +  +P
Sbjct: 757 ECIGRSPYDYCPRYFTVESYRLTYAESIHPIP 788

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450448|ref|XP_002276424.1| PREDICTED: uncharacterized protein LOC100251030 [Vitis vinifera]

 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 126/524 (24%), Positives = 242/524 (46%), Gaps = 43/524 (8%)

Query: 115 GQLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFI 174
           GQ F    +FR A+  +++   F     +N    + ++C +  C W+I  +++ST     
Sbjct: 204 GQRFSGVHEFREALRKYAIAHQFAFRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLIC 263

Query: 175 VKDISLTHACH---IKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPEW 231
           +K ++ TH C    +   ++ T  W+A+  +   K  P     ++   I Q +G+    +
Sbjct: 264 IKKMNATHTCEGAVVTTGYQATRSWVASIIMDKLKVFPNYKPKDIVNDIKQEYGIQLNYF 323

Query: 232 KIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFHRMFV 291
           + ++ ++ A++ L   + + Y++L     +I   N  +     TK++ S     FHR+FV
Sbjct: 324 QAWRGKEIAKEQLQGSYKEAYSQLPFFCEKIMETNPGSFATFTTKEDSS-----FHRLFV 378

Query: 292 CFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSW 351
            FH   + F+  CR  + +D   + S ++  +L A A DG++ + P+A + V+ E   +W
Sbjct: 379 SFHASLYGFQQGCRPLLFLDSISLKSKYQGTLLAATAADGDDGVFPVAFSVVDAETDDNW 438

Query: 352 YFFLNNLNRALRRENGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLVQFPDP 411
           ++FL  L  AL       +  + D + G+ E+I +    +    C   +  Q+L      
Sbjct: 439 HWFLLQLKSAL--PTSRPITFVADREKGLRESIAEIFQGSFHGYCLRYLTEQLLKDLKGQ 496

Query: 412 ---PVKDL----FWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVWV 464
               VK L    F+AA  +     F R ++ I+S S+E + WL Q++   WA        
Sbjct: 497 FSHEVKRLMVEDFYAAAYAPRPESFQRCLETIKSISLEAYNWLIQSEPMNWA-------- 548

Query: 465 KCTNVTIMLTVY--LRNSFAKFF--------SLSIADRFAAISSFIADTYERRRLSGWNW 514
              N       Y  + ++F + F         L I      I   I + +  RR     W
Sbjct: 549 ---NAFFQSARYNHMASNFGELFYSWASEAHELPITQMVDVIRGKIMELFFTRRTDSNQW 605

Query: 515 LRNKITPSVQQQIRNRVIQGQQIRILYSTGRQMKVE-DTDSMTYEVDITSMTCTCRLWQL 573
           +  ++TPS+++++    ++ + +++L S G   +V  DT  +   VDI    C+C+ WQL
Sbjct: 606 M-TRLTPSMEEKLEKETVKVRPLQVLLSGGNTFEVRGDTIEV---VDIDHWDCSCKGWQL 661

Query: 574 SGIPCSHACRCLEELGENIEDNVHQLFSMDQYRTTYASGMDKLP 617
           +G+PC HA   +  +G++  +   + F+ + YR TY+  +  +P
Sbjct: 662 TGLPCCHAIAVISCIGQSPYEYCSRYFTTESYRLTYSESVHPIP 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780251|emb|CAN65744.1| hypothetical protein VITISV_037761 [Vitis vinifera]

 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/525 (24%), Positives = 244/525 (46%), Gaps = 45/525 (8%)

Query: 115 GQLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFI 174
           GQ F    +FR A+  +++   F     +N    + ++C +  C W+I  +++ST     
Sbjct: 204 GQRFSGVHEFREALRKYAIAHQFAFRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLIC 263

Query: 175 VKDISLTHACH---IKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPEW 231
           +K ++ TH C    +   ++ T  W+A+  +   K  P     ++   I Q +G+    +
Sbjct: 264 IKKMNATHTCEGAVVTTGYQATRSWVASIIMDKLKVFPNYKPKDIVNDIKQEYGIQLNYF 323

Query: 232 KIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFHRMFV 291
           + ++ ++ A++ L   + + Y++L     +I   N  +     TK++ S     FHR+FV
Sbjct: 324 QAWRGKEIAKEQLQGSYKEAYSQLPFFCEKIMETNPGSFATFTTKEDSS-----FHRLFV 378

Query: 292 CFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSW 351
            FH   + F+  CR  + +D   + S ++  +L A A DG++ + P+A + V+ E   +W
Sbjct: 379 SFHASLYGFQQGCRPLLFLDSISLKSKYQGTLLAATAADGDDGVFPVAFSVVDAETDDNW 438

Query: 352 YFFLNNLNRALRRENGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLV----Q 407
           ++FL  L  AL       +  + D + G+ E+I +    +    C   +  Q+L     Q
Sbjct: 439 HWFLLQLKSAL--PTSRPITFVADREKGLRESIAEIFQGSFHGYCLRYLTEQLLKDLKGQ 496

Query: 408 FPDPPVKDL----FWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVW 463
           F    VK L    F+AA  +     F R ++ I+S S+E + WL Q++   WA       
Sbjct: 497 FSH-EVKRLMVEDFYAAAYAPRPESFQRCLESIKSISLEAYNWLIQSEPMNWA------- 548

Query: 464 VKCTNVTIMLTVY--LRNSFAKFF--------SLSIADRFAAISSFIADTYERRRLSGWN 513
               N       Y  + ++F + F         L I      I   I + +  RR     
Sbjct: 549 ----NAFFQGARYNHMASNFGELFYSWASEAHELPITQMVDVIRGKIMELFFTRRTDSNQ 604

Query: 514 WLRNKITPSVQQQIRNRVIQGQQIRILYSTGRQMKVE-DTDSMTYEVDITSMTCTCRLWQ 572
           W+  ++TPS+++++    ++ + +++L S G   +V  DT  +   VDI    C+C+ WQ
Sbjct: 605 WM-TRLTPSMEEKLEKETVKVRPLQVLLSGGNTFEVRGDTIEV---VDIDHWDCSCKGWQ 660

Query: 573 LSGIPCSHACRCLEELGENIEDNVHQLFSMDQYRTTYASGMDKLP 617
           L+G+PC HA   +  +G++  +   + F+ + YR TY+  +  +P
Sbjct: 661 LTGLPCCHAIAVISCIGQSPYEYCSRYFTTESYRLTYSESVHPIP 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242039793|ref|XP_002467291.1| hypothetical protein SORBIDRAFT_01g023040 [Sorghum bicolor] gi|241921145|gb|EER94289.1| hypothetical protein SORBIDRAFT_01g023040 [Sorghum bicolor]

 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 140/519 (26%), Positives = 236/519 (45%), Gaps = 14/519 (2%)

Query: 123 QFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFIVKDISLTH 182
           QF+ A+  + L+    L    +    +  +C  + C+W I G+K +    F V   S  H
Sbjct: 264 QFKNALVKYGLKAHKSLKFDIDEKLRVRAKCDWIGCNWMIYGSKTTRSQWFKVVTFSDVH 323

Query: 183 ACHIKRAFK-CTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPEWKIFKAEKRAQ 241
            C  +R     TS  IA +Y    K NP   +  +K  +++ F     +  I K  KRA+
Sbjct: 324 TCPPRRDNNLVTSTVIAKHYYSQIKDNPTWCAGLIKAAVLKDF---LADVSISKC-KRAK 379

Query: 242 QLLGK---DHVQG-YTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFHRMFVCFHEPA 297
            L+ K   D + G Y+R+   + E+ R N  + VV+   D D   +++F R +VCF    
Sbjct: 380 SLVQKQALDAMSGEYSRIYDYQLELLRSNPGSTVVVYL-DPDIEGNQVFERFYVCFDALK 438

Query: 298 FTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNN 357
             F   CR  I +DG      H   +L A   D NN I PIA A V IE++ SWY+FL+ 
Sbjct: 439 KGFLAGCRKLIGLDGCWFKGAHNGNLLCAIGRDANNQIYPIAWAAVPIENYDSWYWFLSL 498

Query: 358 LNRALRRENGEGL--CIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLVQFPDPPVKD 415
           L + L   NG GL   +I+D   G+L+A+++ IP A  R C   IY     ++ D  ++ 
Sbjct: 499 LQKDLNINNG-GLQWVVISDQQKGLLKAVKELIPAAEHRMCARHIYANWRKKYTDKKLQK 557

Query: 416 LFWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVWVKCTNVTIMLTV 475
            +W   +++++V F  Y   +   + E    +  T  + W+         C +V   +  
Sbjct: 558 KWWRCAKASNKVLFNVYRAYLAQDTPEGAADMMATSPEHWSRAYFRRGNNCDSVDNNMCE 617

Query: 476 YLRNSFAKFFSLSIADRFAAISSFIADTYERRRLSGWNWLRNKITPSVQQQIRNRVIQGQ 535
              +S  +     +     AI   +    +  R     W  N I P+V ++++  +    
Sbjct: 618 SFNHSIMEARFYPVISMCEAIRKKLMVRIQENRARADKWTGN-ICPNVFKKLKMNIELSG 676

Query: 536 QIRILYSTGRQMKVEDTDSMTYEVDITSMTCTCRLWQLSGIPCSHACRCLEELGENIEDN 595
           +  +L++     +V+D +   Y V + +  C+C  WQLSG+PC HA   + +  +N+ED 
Sbjct: 677 KCIVLWNGADGYEVQDWEDRKYIVKLLTRECSCEYWQLSGLPCCHAISSIYKGHQNLEDY 736

Query: 596 VHQLFSMDQYRTTYASGMDKLPERSKWQLKLCDEILPPS 634
           +   FS + Y  TY   +  +   + W +      LPP+
Sbjct: 737 IASCFSKEAYMRTYDHVLMPVEGAANWPISDMPRPLPPA 775

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068699|ref|XP_002302803.1| predicted protein [Populus trichocarpa] gi|222844529|gb|EEE82076.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 131/540 (24%), Positives = 254/540 (47%), Gaps = 27/540 (5%)

Query: 116 QLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFIV 175
           Q F +  + R A+  +S+ +GF +   +N    + ++CS   C W+I  +++ST + F +
Sbjct: 13  QQFNNVREVRDALRKYSIAQGFTVKFKKNDSMRVSVKCSVDGCPWRIFASRLSTTHLFRI 72

Query: 176 KDISLTHACHI-------KRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVC 228
           K ++  H C          RA K   + I    LH    +P     E+  QI Q FG+  
Sbjct: 73  KRLNEIHTCGAGTGTDSHPRASKKVVEGIVKEKLH---DSPNVKPKEIANQIQQEFGIEL 129

Query: 229 PEWKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFHR 288
              ++ +  + A + +   + + Y +L  L  +I   N    V L T+ ED G    FHR
Sbjct: 130 RYSQVRRWMEAATEEIQGSYREAYNQLPWLCEKIVETNPGTAVSLNTR-EDLG----FHR 184

Query: 289 MFVCFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDF 348
           +FV FH     F+  CR  + +D   + S ++S +L AAA+DGN  I P+A A V++ + 
Sbjct: 185 LFVAFHASLHGFQSGCRPLLFLDTMSLQSKYQSELLTAAAVDGNYGIFPVAFAIVDVVNG 244

Query: 349 TSWYFFLNNLNRALRRENGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLVQF 408
            +W++FL  L  AL     + +  + D    + ++I      ++   C   +  ++    
Sbjct: 245 DNWHWFLVQLKSAL--PTLQPITFVADRQMALGQSISVVFENSYHAYCLRYLAEELKRDL 302

Query: 409 PDPPVKDL-------FWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMP 461
             P + ++        + A  + +   F + I+ I+S S E ++W+ Q++   WA +   
Sbjct: 303 KGPCIHEIIGVIVGHLYDAAYAPTLDAFRKCIESIKSISPEAYEWILQSEPVHWA-NSFF 361

Query: 462 VWVKCTNVTIMLTVYLRNSFAKFFSLSIADRFAAISSFIADTYERRRLSGWNWLRNKITP 521
              +  ++T  +     +   +  +L +      I   + +    R++    W+  ++TP
Sbjct: 362 EGARYNHITSGIAESFYSWLTELTALPVTKIIDTIRHKLMELIYTRKVDSDQWI-TRLTP 420

Query: 522 SVQQQIRNRVIQGQQIRILYSTGRQMKVEDTDSMTYEVDITSMTCTCRLWQLSGIPCSHA 581
           SV+ +++  +++ Q +++++S     +V+D       V+I +  C+CR WQL+G PCSHA
Sbjct: 421 SVEDKLQKEILKAQSLQVMFSPSNTFEVQDFLGAVNVVNIDAWDCSCREWQLNGFPCSHA 480

Query: 582 CRCLEELGENIEDNVHQLFSMDQYRTTYASGMDKLPERSKWQLKLCDEI-LPPSALDNTS 640
              L+ +G ++ D   + ++ + YR TY+  +  +P   K   +   E+ + PS L   S
Sbjct: 481 VAVLQHIGRDVYDYCSKFYTTEAYRLTYSESIKPVPTVDKPAPQELSEVQVLPSPLRRIS 540

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242044494|ref|XP_002460118.1| hypothetical protein SORBIDRAFT_02g023020 [Sorghum bicolor] gi|241923495|gb|EER96639.1| hypothetical protein SORBIDRAFT_02g023020 [Sorghum bicolor]

 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 137/531 (25%), Positives = 241/531 (45%), Gaps = 22/531 (4%)

Query: 115 GQLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFI 174
           G  FR   QF++A+  + L+    L  +++    +   C    C+W+I G+  +    F 
Sbjct: 336 GMAFRCSRQFKKALVKYGLKAHKSLKFVKDEKCRVKAICDWQGCEWQIYGSLTTRSKWFK 395

Query: 175 VKDISLTHACHIKRAFK-CTSKWIAANYLHLWKQNPETASVEVKQQIIQT-FGVVCPEWK 232
           V      H C  +R  K  +S  IA +Y    K NP   +  +K  +++  F  V     
Sbjct: 396 VVSYVDAHTCPPRRDNKLVSSTLIAKHYYQQIKDNPTWKAGLIKAAVLKDLFADV----S 451

Query: 233 IFKAEKRAQQLLGK---DHVQG-YTRLTQLKTEIERINSHNIVV--LETKDEDSGCSKIF 286
           I K  KRA+ L+ +   D ++G Y+R+   + E+ER N    V   L+  +E+    KIF
Sbjct: 452 ISKC-KRAKTLVMQKCLDAMKGEYSRVFDYQLELERSNPGTTVAVCLDPVEEEK---KIF 507

Query: 287 HRMFVCFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIE 346
            RM+VCF      F   CR  I +DG      +   +L A   D NN + P+A A V IE
Sbjct: 508 ERMYVCFDGLKKGFLAGCRKVIGLDGCWFKGANNGNLLCAVGRDANNQMYPVAWAAVPIE 567

Query: 347 DFTSWYFFLNNLNRALR-RENGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQML 405
           ++ +WY+F++ L + L   + G    +I+D   G+L+A+++ +P A  R C   IY    
Sbjct: 568 NYDTWYWFISLLQKDLNISDGGSEWVLISDQQKGLLKAVKELVPNAEHRMCARHIYANWR 627

Query: 406 VQFPDPPVKDLFWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVWVK 465
            ++ D  ++  +W   ++++   F  Y   +  ++ E    +  T  + W+     +   
Sbjct: 628 KKYTDKKLQKKWWRCAKASNTSLFNLYRAWLAEATPEGAADMMTTSPEHWSRAYFRLGSN 687

Query: 466 CTNVTIMLTVYLRNSF--AKFFSLSIADRFAAISSFIADTYERRRLSGWNWLRNKITPSV 523
           C ++   +     NS   A+F+ +            +     R R   WN    KI P++
Sbjct: 688 CDSIDNNMCESFNNSIMEARFYPVISMCEAIRKKLMVRIQENRTRAQKWN---GKICPNI 744

Query: 524 QQQIRNRVIQGQQIRILYSTGRQMKVEDTDSMTYEVDITSMTCTCRLWQLSGIPCSHACR 583
            ++++  +       +L++     +V++ +   Y V++    C+CR WQLSG+PC HA  
Sbjct: 745 FKKLKLSIQLSGNCIVLWNGEHGFEVQEREDRRYTVNLQLKQCSCRYWQLSGLPCCHAIS 804

Query: 584 CLEELGENIEDNVHQLFSMDQYRTTYASGMDKLPERSKWQLKLCDEILPPS 634
            + +    IED +   FS+D Y  TYA  +  +     W      + LPP+
Sbjct: 805 AIYKASHKIEDYIAPCFSIDAYMATYAHVLQPVEGAENWPTAEMPKPLPPA 855

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222626119|gb|EEE60251.1| hypothetical protein OsJ_13260 [Oryza sativa Japonica Group]

 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 146/528 (27%), Positives = 233/528 (44%), Gaps = 26/528 (4%)

Query: 118 FRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFIVKD 177
           FR + Q + A+  ++L++   +  I+N  D +   C    C W +  +  S  + F +  
Sbjct: 190 FRGKMQLKDAITRYALKKKVNIKFIKNDRDRLRAVCMRKGCTWLLHASYNSRSDWFQIVT 249

Query: 178 ISLTHAC--HIKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPEWKIFK 235
            +  H+C   +K     TS+ I   Y  + K NP   + E+K+ + +  GV      + +
Sbjct: 250 YNGNHSCCPDLKNKRLSTSR-ICDKYESVIKANPSWKARELKETVQEEMGVDVSMTMVKR 308

Query: 236 AEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIV-VLETKDEDSGCSKIFHRMFVCFH 294
           A+ R  + +   H   Y+RL     E+ R N  + V V    DE+     +F R +VC  
Sbjct: 309 AKSRVIKKVMDAHSGEYSRLFDYALELMRSNPGSSVHVALDPDENE---HVFQRFYVCLD 365

Query: 295 EPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFF 354
                F   CR  I  DG  +  V K  +L A   D NN I PIA A VE E+ +SW +F
Sbjct: 366 ACRRGFLDGCRRVIGFDGCFLKGVVKGELLSAVGRDANNQIYPIAWAVVEYENASSWNWF 425

Query: 355 LNNLNRALR-RENGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLVQFPDPPV 413
           L +L + L     G+G   +TD   G+L  IE   P A  R C   IY     +      
Sbjct: 426 LGHLQKDLNIPYGGDGWVFLTDQQKGLLSVIEHLFPKAEHRMCARHIYANWRKRHRLQEY 485

Query: 414 KDLFWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWALHCMPVWVKCTNVTIML 473
           +  FW   RS++ V F  Y   + + +    + L +T    W      +   C +V    
Sbjct: 486 QKRFWKIARSSNAVLFNHYKSKLANKTPMGWEDLEKTNPIHWCRAWFKLGSNCDSVE--- 542

Query: 474 TVYLRNSFAKFFSLSIADRFAAISSFIADTYER--RRL-----SGWNWLRNKITPSVQQQ 526
                N    F +  I  RF  I + + D   +  RR+     +   W    I P++ ++
Sbjct: 543 ----NNICESFNNWIIEARFKPIITMLEDIRMKVTRRIQENKTNSERWTMG-ICPNILKK 597

Query: 527 IRNRVIQGQQI-RILYSTGRQMKVEDTDSMTYEVDITSMTCTCRLWQLSGIPCSHACRCL 585
           I N++    Q   +L++     +V +     + VD+++ TC+CR WQ+SGIPC HAC   
Sbjct: 598 I-NKIRHATQFCHVLWNGSSGFEVREK-KWRFTVDLSANTCSCRYWQISGIPCQHACAAY 655

Query: 586 EELGENIEDNVHQLFSMDQYRTTYASGMDKLPERSKWQLKLCDEILPP 633
            ++ E   ++V+  FS+DQYR TY   +  +   S W L      LPP
Sbjct: 656 FKMAEEPNNHVNMCFSIDQYRNTYQDVLQPVEHESVWPLSTNPRPLPP 703

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	701
TAIR|locus:2014230	719	AT1G64260 "AT1G64260" [Arabido	0.483	0.471	0.206	1.7e-18
TAIR|locus:1006230722	750	AT1G64255 [Arabidopsis thalian	0.480	0.449	0.216	4.8e-15
TAIR|locus:2197122	785	AT1G49920 "AT1G49920" [Arabido	0.485	0.433	0.228	3.3e-14

TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
 Identities = 73/354 (20%), Positives = 148/354 (41%)

Query:   112 MRQGQLFRDEFQFRRAVEVFSLREGFKLCII-ENGPDLIHLECSSLRCDWKIVGAKISTG 170
             M  G  F+D  + ++AV+ + +R   + CI+ E   ++   EC   +C W +  A++   
Sbjct:   185 MHLGLCFKDRDELKKAVDWWCIRRR-RNCIVRETEKEMYTFECVRWKCKWSLRAARMEEH 243

Query:   171 NSFIVKDISLTHACHIKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPE 230
                 +   +  H C  +      S++ A     + +  P  +  E+K+   +  G     
Sbjct:   244 GLVEITKYTGPHTCSHEYPNDFESEFAADEIERVVRIQPTLSIAELKKWWKEKTGYELQT 303

Query:   231 WKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDE--DSGCSKIFHR 288
              K+   +    + +  D  Q +  + +L   I   +S N ++++ + +   +     F  
Sbjct:   304 SKMRDGKLEVIKRVFGDEDQSFRVMPKL---ISAFHSSNGLLVDWQYDLFPNPDFASFRG 360

Query:   289 MFVCFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDF 348
             +F  F +    F+ +CR  I VD   +N  ++  +++A+ +D  N   P+A A  +    
Sbjct:   361 VFWSFSQSIEGFQ-HCRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAVTKEVST 419

Query:   349 TSWYFFXXXXXXXXXXENGEGLCIITDGDNGVLEAIEDC-----IPLAHCRQCCCSIYNQ 403
              SW +F             + LC+I+     ++  + +       P AH + C   + +Q
Sbjct:   420 DSWRWFFTKIREKVTQR--KDLCLISSPLRDIVAVVNEPGSLWQEPWAHHKFCLNHLRSQ 477

Query:   404 MLVQFPDPPVKDLFWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWAL 457
              L  F D  ++ L   A  +  + +F  Y+  I+  + E  +WL Q    KWAL
Sbjct:   478 FLGVFRDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKWAL 531

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
 Identities = 77/356 (21%), Positives = 147/356 (41%)

Query:   112 MRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGN 171
             +R G  F+D  + ++AV+  SL+   K  + E   D    EC   +C W +  A++    
Sbjct:   192 LRVGLCFKDGDELKKAVDWCSLKAQQKCVVRETAKDEYIFECIRWKCKWSLGAARMKKHG 251

Query:   172 SFIVKDISLT--HACH--IKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVV 227
               +V+ I  T  H CH  +   FK  S++         +  P     E+K+   +  G  
Sbjct:   252 --LVEIIKYTGPHTCHPIVPEDFK--SEFETDEIERAVRYMPTQTISELKKWWKKKIGYE 307

Query:   228 CPEWKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCS-KIF 286
                  +  A+++A + +  D  Q +    +L + +   +S+ ++V    D     +   F
Sbjct:   308 LETSDVRLAKEKAIKRVFGDWDQSFEDFPKLMSAL--CSSNGLLVDWKYDLFPNPNFASF 365

Query:   287 HRMFVCFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIE 346
               +F  F +    F+ +CR  I VD   +N  ++  +++A+ +D  N   P+A A  +  
Sbjct:   366 CGVFWAFPQSIEGFQ-HCRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAVTKEV 424

Query:   347 DFTSWYFFXXXXXXXXXXENGEGLCIITDGDNGVLEAIEDC-----IPLAHCRQCCCSIY 401
                 W +F             +GLC+I+     ++  + +       P A+ R      Y
Sbjct:   425 STDIWRWFLTGIREKVTQR--KGLCLISSPHPDIIAVVNESGSQWQEPWAYHRFSLNHFY 482

Query:   402 NQMLVQFPDPPVKDLFWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKKWAL 457
             +Q    FP   +      A  ++ + +F  Y+  I+  + E  +WL Q    +WAL
Sbjct:   483 SQFSRVFPSFCLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWAL 538

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 3.3e-14, P = 3.3e-14
 Identities = 83/363 (22%), Positives = 157/363 (43%)

Query:   112 MRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGN 171
             MR G  F+D  + ++AV+  S++   K  + E   D+  +EC    C W I  ++     
Sbjct:   180 MRVGLCFKDLAEMKKAVDWCSIKRRQKCLLRETEKDVYVVECERWHCKWSICASRREEDG 239

Query:   172 SFIVKDISLTHACHIKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFG-----V 226
              F + + S  H C+ +      ++ I      + +  P  ++ E+ +   + FG     V
Sbjct:   240 LFEITECSGPHDCYPEHLNDFDAECIPFQIERVVRVQPTLSTAELDKWWEKKFGFALDQV 299

Query:   227 V--CPEWKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVV---LETKDEDSG 281
             V  C E  +  A+ +A +    D  Q +  + +L + +   +S+ ++V    ++   D  
Sbjct:   300 VEHCSEGLVEDAKVKAIKRFFGDWDQSFRLIPKLMSVLH--SSNGLLVDWQYDSLTHDPE 357

Query:   282 CSKIFHRMFVCFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALA 341
              +  F  +F  F +    F+ +CR  I VD   +   +K  +++A+A D  N   P+A A
Sbjct:   358 HAS-FRGLFWAFSQSIQGFQ-HCRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFA 415

Query:   342 EVEIEDFTSWYFFXXXXXXXXXXENGEGLCIITDGDNGVLEAIEDC-----IPLAHCRQC 396
               +     SW +F             +G+C+I+  D  +L  I +       P A+ R C
Sbjct:   416 VTKEVSVDSWRWFLTRIREKVTQR--QGICLISSPDPDILAVINEPGSQWKEPWAYHRFC 473

Query:   397 CCSIYNQMLVQFP--DPPVKDLFWAACRSTSEVQFTRYIKMIQSSSIECHQWLFQTQWKK 454
                + +++    P  D  +  L   A  S+ + +F  Y+K I+  + E  +WL Q    +
Sbjct:   474 LYHLCSKLCSVSPGFDYNMHFLVDEAGSSSQKEEFDSYMKEIKERNPEAWKWLDQFPPHQ 533

Query:   455 WAL 457
             WAL
Sbjct:   534 WAL 536


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.135   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      701       681   0.00079  121 3  11 22  0.48    33
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  633 (67 KB)
  Total size of DFA:  435 KB (2205 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  57.84u 0.10s 57.94t   Elapsed:  00:00:03
  Total cpu time:  57.84u 0.10s 57.94t   Elapsed:  00:00:03
  Start:  Fri May 10 18:25:13 2013   End:  Fri May 10 18:25:16 2013

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Sb01g023040.1 hypothetical protein (934 aa) (Sorghum bicolor)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	701
pfam10551	88	pfam10551, MULE, MULE transposase domain	1e-10
pfam03108	67	pfam03108, DBD_Tnp_Mut, MuDR family transposase	8e-08
smart00575	28	smart00575, ZnF_PMZ, plant mutator transposase zin	8e-06

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 320 KSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNG 379
            +    A  +D +    P+A A V  E   SW +FL  L +AL       L II+DGD G
Sbjct: 5   TNKYKGAVGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALGGR--PPLTIISDGDKG 62

Query: 380 VLEAIEDCIPLAHCRQC 396
           + +AI++  P A  R C
Sbjct: 63  LKKAIKEVFPNARHRLC 79

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|190526 pfam03108, DBD_Tnp_Mut, MuDR family transposase

 Score = 49.1 bits (118), Expect = 8e-08
 Identities = 12/64 (18%), Positives = 35/64 (54%)

Query: 112 MRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGN 171
           +  GQ+F+ + +F++AV  ++++  F+  + ++       +C    C W++  +K+   +
Sbjct: 4   LEVGQVFKSKEEFKKAVRKYAIKNRFEFKVKKSDKTRYRAKCKDEGCPWRVRASKLKDSD 63

Query: 172 SFIV 175
           +F +
Sbjct: 64  TFQI 67

This region is found in plant proteins that are presumed to be the transposases for Mutator transposable elements. These transposons contain two ORFs. The molecular function of this region is unknown. Length = 67

>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger

 Score = 42.5 bits (101), Expect = 8e-06
 Identities = 13/17 (76%), Positives = 15/17 (88%)

Query: 565 TCTCRLWQLSGIPCSHA 581
           TC+CR +QLSGIPC HA
Sbjct: 2   TCSCRKFQLSGIPCRHA 18

Length = 28

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	701
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.85
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.79
PF03108	67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	99.65
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.47
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	98.87
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	98.77
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	98.49
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	98.12
PF13610	140	DDE_Tnp_IS240: DDE domain	96.27
PHA02517	277	putative transposase OrfB; Reviewed	96.09
PRK14702	262	insertion element IS2 transposase InsD; Provisiona	95.9
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	95.33
PF03050	271	DDE_Tnp_IS66: Transposase IS66 family ; InterPro:	94.93
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	94.29
PF04684	496	BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact	92.92
PRK09409	301	IS2 transposase TnpB; Reviewed	92.87
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	92.61
COG3316	215	Transposase and inactivated derivatives [DNA repli	89.96
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	86.29
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	85.38
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	84.6
PF13565	77	HTH_32: Homeodomain-like domain	81.05

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=7.9e-71  Score=632.04  Aligned_cols=466  Identities=15%  Similarity=0.194  Sum_probs=379.3

Q ss_pred             CccccCCceeCCHHHHHHHHHHHHHHcCeEEEEeeeCCc-------eEEEEEec--------------------------
Q 043802          109 KMIMRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENGPD-------LIHLECSS--------------------------  155 (701)
Q Consensus       109 ~~~~~vG~~F~s~~e~k~av~~yAi~~gf~~~~~ks~~~-------r~~~~C~~--------------------------  155 (701)
                      ...+.+||+|.|.++++++|..||...||.+++.++.+.       ..+++|++                          
T Consensus        71 ~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~~  150 (846)
T PLN03097         71 NLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENG  150 (846)
T ss_pred             CccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCcccc
Confidence            557999999999999999999999999999988654432       23466654                          


Q ss_pred             --------CCCceEEEEEEecCCCeEEEEecCCCcccCCcCccccchHHHHHHHhhhhhcCCCCChHHHHHHHHHHhC--
Q 043802          156 --------LRCDWKIVGAKISTGNSFIVKDISLTHACHIKRAFKCTSKWIAANYLHLWKQNPETASVEVKQQIIQTFG--  225 (701)
Q Consensus       156 --------~gCpwrv~as~~~~~~~w~V~~~~~~Hnc~~~~~~~~ss~~ia~~~~~~i~~~~~~~~~~i~~~l~~~~g--  225 (701)
                              .||+++|++++. ..+.|.|+.+..+|||++.....++.                 ..+.+...+.+..+  
T Consensus       151 ~~rR~~tRtGC~A~m~Vk~~-~~gkW~V~~fv~eHNH~L~p~~~~~~-----------------~~r~~~~~~~~~~~~~  212 (846)
T PLN03097        151 TGRRSCAKTDCKASMHVKRR-PDGKWVIHSFVKEHNHELLPAQAVSE-----------------QTRKMYAAMARQFAEY  212 (846)
T ss_pred             cccccccCCCCceEEEEEEc-CCCeEEEEEEecCCCCCCCCccccch-----------------hhhhhHHHHHhhhhcc
Confidence                    479999999874 56889999999999999921111110                 01111111111111  


Q ss_pred             --CcCChh----HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCcEEEEEeccCCCCcccceEEEEEeeCcchhH
Q 043802          226 --VVCPEW----KIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFHRMFVCFHEPAFT  299 (701)
Q Consensus       226 --~~~s~~----~~~rak~~a~~~~~g~~~~~y~~L~~~~~~l~~~NPg~~~~v~~~~~~~~~~~~f~~~F~~~~~~~~~  299 (701)
                        +.....    ..-+.|.+  +...|    ....|.+||++++..||+|+|.+++| +++    +++++||+++.++.+
T Consensus       213 ~~v~~~~~d~~~~~~~~r~~--~~~~g----D~~~ll~yf~~~q~~nP~Ffy~~qlD-e~~----~l~niFWaD~~sr~~  281 (846)
T PLN03097        213 KNVVGLKNDSKSSFDKGRNL--GLEAG----DTKILLDFFTQMQNMNSNFFYAVDLG-EDQ----RLKNLFWVDAKSRHD  281 (846)
T ss_pred             ccccccchhhcchhhHHHhh--hcccc----hHHHHHHHHHHHHhhCCCceEEEEEc-cCC----CeeeEEeccHHHHHH
Confidence              000000    01111111  11123    35689999999999999999999999 777    999999999999999


Q ss_pred             HhhcCcceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCch
Q 043802          300 FKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNG  379 (701)
Q Consensus       300 f~~~~~~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~  379 (701)
                      |.+ |+|||.+|+||++|+|++||+.++|+|+|++++++||||+.+|+.|+|.|+|++|+++|++..  |.+||||++.+
T Consensus       282 Y~~-FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~--P~tIiTDqd~a  358 (846)
T PLN03097        282 YGN-FSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQA--PKVIITDQDKA  358 (846)
T ss_pred             HHh-cCCEEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCC--CceEEecCCHH
Confidence            998 999999999999999999999999999999999999999999999999999999999999988  99999999999


Q ss_pred             HHHHHHhhCCCcceeechhhHHHHHHHhCCC-----CchhHHHHHHhh-cCCHHHHHHHHHHHHh-cCchhHHHHhhc--
Q 043802          380 VLEAIEDCIPLAHCRQCCCSIYNQMLVQFPD-----PPVKDLFWAACR-STSEVQFTRYIKMIQS-SSIECHQWLFQT--  450 (701)
Q Consensus       380 l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~~~-----~~~~~~~~~~~~-a~~~~eFe~~~~~l~~-~~~~~~~~L~~~--  450 (701)
                      |.+||++|||++.|++|+|||++|+.++++.     +.|...|+.+++ +.+++||+..|..|.. ++...++||+.+  
T Consensus       359 m~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~  438 (846)
T PLN03097        359 MKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYE  438 (846)
T ss_pred             HHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence            9999999999999999999999999999863     588999999877 5699999999999865 578999999998  


Q ss_pred             cCccccccccCccccccccccchhhhHhhHhhhc--cccCHHHHHHHHHHHHHHH-H-HHHhhh--------------cc
Q 043802          451 QWKKWALHCMPVWVKCTNVTIMLTVYLRNSFAKF--FSLSIADRFAAISSFIADT-Y-ERRRLS--------------GW  512 (701)
Q Consensus       451 ~~e~W~~a~~~~~~~~~~~T~N~~Es~N~~lk~~--r~~pi~~lle~ir~~~~~~-~-~rr~~~--------------~~  512 (701)
                      .+++|+++|+++.+..|+.||+++||+|++|++.  +..+|..|++.+-..+..+ . +.....              .+
T Consensus       439 ~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piE  518 (846)
T PLN03097        439 DRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLE  518 (846)
T ss_pred             hHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHH
Confidence            8999999999999999999999999999999984  6788888888876666554 1 111110              02


Q ss_pred             cccCCCCCHHHHHHHHHHHHcCceEEEEEeCC----ceEEEEeCC-CcEEEEEec----CceeccccccccCCCchhHhH
Q 043802          513 NWLRNKITPSVQQQIRNRVIQGQQIRILYSTG----RQMKVEDTD-SMTYEVDIT----SMTCTCRLWQLSGIPCSHACR  583 (701)
Q Consensus       513 ~~~~~~~tp~~~~~l~~~~~~a~~~~V~~~~~----~~feV~~~~-~~~~~V~l~----~~tCsC~~~~~~GiPC~Hala  583 (701)
                      ++++..|||.+|++||+++..+..|.+...+.    .+|.|...+ ...|.|..+    +.+|+|++|+..||||+|||.
T Consensus       519 kQAs~iYT~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLk  598 (846)
T PLN03097        519 KSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALV  598 (846)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHH
Confidence            44458999999999999999999998876432    368887643 356777654    689999999999999999999


Q ss_pred             HHHHcCC--CchhhhhhhccHHHHH
Q 043802          584 CLEELGE--NIEDNVHQLFSMDQYR  606 (701)
Q Consensus       584 v~~~~~~--~~~~yv~~~ys~~~~~  606 (701)
                      |+...++  .|+.||.++|+..+-.
T Consensus       599 VL~~~~v~~IP~~YILkRWTKdAK~  623 (846)
T PLN03097        599 VLQMCQLSAIPSQYILKRWTKDAKS  623 (846)
T ss_pred             HHhhcCcccCchhhhhhhchhhhhh
Confidence            9999998  5999999999988754

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.85  E-value=2e-21  Score=168.84  Aligned_cols=90  Identities=29%  Similarity=0.433  Sum_probs=86.2

Q ss_pred             ceEEecccCceEEE---EEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHHHHHHhhC
Q 043802          312 GWVINSVHKSVMLV---AAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLEAIEDCI  388 (701)
Q Consensus       312 ~T~~~~~y~~~ll~---a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vf  388 (701)
                      |||++|+| ++++.   ++|+|++|+.+|+||+++++|+.++|.|||+.|++.++..   |.+||||+++|+++||+++|
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~~---p~~ii~D~~~~~~~Ai~~vf   76 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQK---PKVIISDFDKALINAIKEVF   76 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhccccC---ceeeeccccHHHHHHHHHHC
Confidence            79999999 98886   9999999999999999999999999999999999999873   89999999999999999999


Q ss_pred             CCcceeechhhHHHHHH
Q 043802          389 PLAHCRQCCCSIYNQML  405 (701)
Q Consensus       389 P~a~h~~C~~Hi~~n~~  405 (701)
                      |++.|++|.||+.+|++
T Consensus        77 P~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   77 PDARHQLCLFHILRNIK   93 (93)
T ss_pred             CCceEehhHHHHHHhhC
Confidence            99999999999999975

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.79  E-value=2.6e-20  Score=202.55  Aligned_cols=223  Identities=15%  Similarity=0.212  Sum_probs=185.3

Q ss_pred             CCCChHHHHHHHHHHhC-CcCChhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCcEEEEEeccCCCCcccceE
Q 043802          209 PETASVEVKQQIIQTFG-VVCPEWKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFH  287 (701)
Q Consensus       209 ~~~~~~~i~~~l~~~~g-~~~s~~~~~rak~~a~~~~~g~~~~~y~~L~~~~~~l~~~NPg~~~~v~~~~~~~~~~~~f~  287 (701)
                      .+++.++|.+.++.-+| ..+|.+++.|......+.           +..|...               +-+        
T Consensus       113 ~G~Str~i~~~l~~l~g~~~~S~s~vSri~~~~~~~-----------~~~w~~R---------------~L~--------  158 (381)
T PF00872_consen  113 KGVSTRDIEEALEELYGEVAVSKSTVSRITKQLDEE-----------VEAWRNR---------------PLE--------  158 (381)
T ss_pred             cccccccccchhhhhhcccccCchhhhhhhhhhhhh-----------HHHHhhh---------------ccc--------
Confidence            58899999999999999 889999988766554321           1111111               001        


Q ss_pred             EEEEeeCcchhHHhhcC-cceEEEeceEEecccC-----ceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHH
Q 043802          288 RMFVCFHEPAFTFKMNC-RNFIAVDGWVINSVHK-----SVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRA  361 (701)
Q Consensus       288 ~~F~~~~~~~~~f~~~~-~~vi~iD~T~~~~~y~-----~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~  361 (701)
                                     .. -++|++||+|.+.+.+     ..+++++|+|.+|+..+||+.+...|+.++|.-||+.|++.
T Consensus       159 ---------------~~~y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~R  223 (381)
T PF00872_consen  159 ---------------SEPYPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKER  223 (381)
T ss_pred             ---------------cccccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecchhhhhc
Confidence                           13 4899999999987643     46899999999999999999999999999999999999988


Q ss_pred             cccCCCCCeEEEecCCchHHHHHHhhCCCcceeechhhHHHHHHHhCCCC---chhHHHHHHhhcCCHHHHHHHHHHHHh
Q 043802          362 LRRENGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLVQFPDP---PVKDLFWAACRSTSEVQFTRYIKMIQS  438 (701)
Q Consensus       362 ~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~~~~---~~~~~~~~~~~a~~~~eFe~~~~~l~~  438 (701)
                      ....   |..||+|+++||.+||.++||.+.++.|++|+++|+.+++..+   .+...++.+..+.+.++....++.+.+
T Consensus       224 Gl~~---~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~~  300 (381)
T PF00872_consen  224 GLKD---ILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPKKDRKEVKADLKAIYQAPDKEEAREALEEFAE  300 (381)
T ss_pred             cccc---cceeeccccccccccccccccchhhhhheechhhhhccccccccchhhhhhccccccccccchhhhhhhhccc
Confidence            5443   7999999999999999999999999999999999999999754   677888888888888888888877654


Q ss_pred             ----cCchhHHHHhhccCccccccccCccccccccccchhhhHhhHhhh
Q 043802          439 ----SSIECHQWLFQTQWKKWALHCMPVWVKCTNVTIMLTVYLRNSFAK  483 (701)
Q Consensus       439 ----~~~~~~~~L~~~~~e~W~~a~~~~~~~~~~~T~N~~Es~N~~lk~  483 (701)
                          .+|.+.++|.+...+.|+..-|+...+--+.|||.+||+|+.||.
T Consensus       301 ~~~~kyp~~~~~l~~~~~~~~tf~~fP~~~~~~i~TTN~iEsln~~irr  349 (381)
T PF00872_consen  301 KWEKKYPKAAKSLEENWDELLTFLDFPPEHRRSIRTTNAIESLNKEIRR  349 (381)
T ss_pred             ccccccchhhhhhhhccccccceeeecchhccccchhhhccccccchhh
Confidence                478899999998888888877877766678999999999999987

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]

Probab=99.65  E-value=4.4e-16  Score=126.21  Aligned_cols=67  Identities=19%  Similarity=0.524  Sum_probs=65.1

Q ss_pred             CccccCCceeCCHHHHHHHHHHHHHHcCeEEEEeeeCCceEEEEEecCCCceEEEEEEecCCCeEEE
Q 043802          109 KMIMRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKISTGNSFIV  175 (701)
Q Consensus       109 ~~~~~vG~~F~s~~e~k~av~~yAi~~gf~~~~~ks~~~r~~~~C~~~gCpwrv~as~~~~~~~w~V  175 (701)
                      +|.|.+||+|+|++||+.||..||+.++|++++.+|+++|++++|...||||+|+|++.++++.|+|
T Consensus         1 n~~l~~G~~F~~~~e~k~av~~yai~~~~~~~v~ksd~~r~~~~C~~~~C~Wrv~as~~~~~~~~~I   67 (67)
T PF03108_consen    1 NPELEVGQTFPSKEEFKEAVREYAIKNGFEFKVKKSDKKRYRAKCKDKGCPWRVRASKRKRSDTFQI   67 (67)
T ss_pred             CCccccCCEECCHHHHHHHHHHHHHhcCcEEEEeccCCEEEEEEEcCCCCCEEEEEEEcCCCCEEEC
Confidence            5789999999999999999999999999999999999999999999999999999999999999986

The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.47  E-value=6.9e-13  Score=141.69  Aligned_cols=222  Identities=12%  Similarity=0.106  Sum_probs=172.7

Q ss_pred             CCCCChHHHHHHHHHHhCCcCChhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCcEEEEEeccCCCCcccceE
Q 043802          208 NPETASVEVKQQIIQTFGVVCPEWKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLETKDEDSGCSKIFH  287 (701)
Q Consensus       208 ~~~~~~~~i~~~l~~~~g~~~s~~~~~rak~~a~~~~~g~~~~~y~~L~~~~~~l~~~NPg~~~~v~~~~~~~~~~~~f~  287 (701)
                      ..+++++++.+.+++.++..++...+.+.-....               ..+.+++..-.                    
T Consensus        98 ~~gv~Tr~i~~~~~~~~~~~~s~~~iS~~~~~~~---------------e~v~~~~~r~l--------------------  142 (379)
T COG3328          98 AKGVTTREIEALLEELYGHKVSPSVISVVTDRLD---------------EKVKAWQNRPL--------------------  142 (379)
T ss_pred             HcCCcHHHHHHHHHHhhCcccCHHHhhhHHHHHH---------------HHHHHHHhccc--------------------
Confidence            3689999999999999988777766655433332               23333322110                    


Q ss_pred             EEEEeeCcchhHHhhcCcceEEEeceEEecc--cCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccC
Q 043802          288 RMFVCFHEPAFTFKMNCRNFIAVDGWVINSV--HKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRE  365 (701)
Q Consensus       288 ~~F~~~~~~~~~f~~~~~~vi~iD~T~~~~~--y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~  365 (701)
                                     +..+++++|++|++-+  -+..+++|+|++.+|+-..+|+.+-..|+ ..|.-||..|+...-..
T Consensus       143 ---------------~~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rgl~~  206 (379)
T COG3328         143 ---------------GDYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRGLSD  206 (379)
T ss_pred             ---------------cCceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhccccc
Confidence                           2668999999999988  46789999999999999999999999999 99998888888875443


Q ss_pred             CCCCeEEEecCCchHHHHHHhhCCCcceeechhhHHHHHHHhCCCC---chhHHHHHHhhcCCHHHHHHHHHHH----Hh
Q 043802          366 NGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLVQFPDP---PVKDLFWAACRSTSEVQFTRYIKMI----QS  438 (701)
Q Consensus       366 ~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~~~~---~~~~~~~~~~~a~~~~eFe~~~~~l----~~  438 (701)
                         ...+++|+.+|+.+||..+||.+.++.|..|+.+|+..+...+   .+...+..+..+.+.++-...|..+    ..
T Consensus       207 ---v~l~v~Dg~~gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~  283 (379)
T COG3328         207 ---VLLVVVDGLKGLPEAISAVFPQAAVQRCIVHLVRNLLDKVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGK  283 (379)
T ss_pred             ---eeEEecchhhhhHHHHHHhccHhhhhhhhhHHHhhhhhhhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhh
Confidence               4677789999999999999999999999999999999998766   3344455555566666655555554    44


Q ss_pred             cCchhHHHHhhccCccccccccCccccccccccchhhhHhhHhhh
Q 043802          439 SSIECHQWLFQTQWKKWALHCMPVWVKCTNVTIMLTVYLRNSFAK  483 (701)
Q Consensus       439 ~~~~~~~~L~~~~~e~W~~a~~~~~~~~~~~T~N~~Es~N~~lk~  483 (701)
                      ..|....|+.+..-+.|...-|+...+--+.|||..|++|+.++.
T Consensus       284 ~yP~i~~~~~~~~~~~~~F~~fp~~~r~~i~ttN~IE~~n~~ir~  328 (379)
T COG3328         284 RYPAILKSWRNALEELLPFFAFPSEIRKIIYTTNAIESLNKLIRR  328 (379)
T ss_pred             hcchHHHHHHHHHHHhcccccCcHHHHhHhhcchHHHHHHHHHHH
Confidence            568888888887777777777777655568999999999998775

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=98.87  E-value=1e-09  Score=71.98  Aligned_cols=27  Identities=52%  Similarity=0.988  Sum_probs=25.1

Q ss_pred             ceeccccccccCCCchhHhHHHHHcCC
Q 043802          564 MTCTCRLWQLSGIPCSHACRCLEELGE  590 (701)
Q Consensus       564 ~tCsC~~~~~~GiPC~Halav~~~~~~  590 (701)
                      .+|||++|+..||||+|+|+|+...++
T Consensus         1 ~~CsC~~~~~~gipC~H~i~v~~~~~~   27 (28)
T smart00575        1 KTCSCRKFQLSGIPCRHALAAAIHIGL   27 (28)
T ss_pred             CcccCCCcccCCccHHHHHHHHHHhCC
Confidence            479999999999999999999998875

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=98.77  E-value=3.6e-08  Score=85.19  Aligned_cols=69  Identities=13%  Similarity=0.283  Sum_probs=65.5

Q ss_pred             eCCHHHHHHHHHHHHHHcCeEEEEeeeCCceEEEEEec------------------------------------------
Q 043802          118 FRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSS------------------------------------------  155 (701)
Q Consensus       118 F~s~~e~k~av~~yAi~~gf~~~~~ks~~~r~~~~C~~------------------------------------------  155 (701)
                      |.+++|++.||+.++...|+++.+.+|+...+.++|..                                          
T Consensus         1 F~~k~~ikpwlq~~~~~~Gi~iVIerSd~~ki~FkCk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~t~srk   80 (111)
T PF08731_consen    1 FDDKDEIKPWLQKIFYPQGIGIVIERSDKKKIVFKCKNGKRYRHKKKKKGQAQAQQKESTSGNKNKSSKKKKKKRTKSRK   80 (111)
T ss_pred             CCchHHHHHHHHHHhhhcCceEEEEecCCceEEEEEecCCCcccccccccccccccccccccccccccccccCCcccccc
Confidence            88999999999999999999999999999999999983                                          


Q ss_pred             CCCceEEEEEEecCCCeEEEEecCCCcccCC
Q 043802          156 LRCDWKIVGAKISTGNSFIVKDISLTHACHI  186 (701)
Q Consensus       156 ~gCpwrv~as~~~~~~~w~V~~~~~~Hnc~~  186 (701)
                      ..|||+|+|......+.|.|..++..|+|++
T Consensus        81 ~~CPFriRA~yS~k~k~W~lvvvnn~HnH~l  111 (111)
T PF08731_consen   81 NTCPFRIRANYSKKNKKWTLVVVNNEHNHPL  111 (111)
T ss_pred             cCCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence            2799999999999999999999999999974

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=98.49  E-value=2.7e-07  Score=79.53  Aligned_cols=60  Identities=17%  Similarity=0.290  Sum_probs=53.4

Q ss_pred             HHHHHHHHHcCeEEEEeeeCCc-------eEEEEEec----------------------CCCceEEEEEEecCCCeEEEE
Q 043802          126 RAVEVFSLREGFKLCIIENGPD-------LIHLECSS----------------------LRCDWKIVGAKISTGNSFIVK  176 (701)
Q Consensus       126 ~av~~yAi~~gf~~~~~ks~~~-------r~~~~C~~----------------------~gCpwrv~as~~~~~~~w~V~  176 (701)
                      ++|..||...||.++..++.+.       ++.++|.+                      .||||+|.+.+.. ++.|.|+
T Consensus         1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G~~~~~~~~~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~   79 (91)
T PF03101_consen    1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSRGGKYKSKKKNEEKRRRNRPSKKTGCKARINVKRRK-DGKWRVT   79 (91)
T ss_pred             CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECCcccccccccccccccccccccccCCCEEEEEEEcc-CCEEEEE
Confidence            4799999999999999876654       78899985                      4899999999987 9999999


Q ss_pred             ecCCCcccCC
Q 043802          177 DISLTHACHI  186 (701)
Q Consensus       177 ~~~~~Hnc~~  186 (701)
                      .+..+|||++
T Consensus        80 ~~~~~HNH~L   89 (91)
T PF03101_consen   80 SFVLEHNHPL   89 (91)
T ss_pred             ECcCCcCCCC
Confidence            9999999986

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.12  E-value=2.2e-06  Score=61.65  Aligned_cols=30  Identities=37%  Similarity=0.795  Sum_probs=27.2

Q ss_pred             EEecCceeccccccccCCCchhHhHHHHHc
Q 043802          559 VDITSMTCTCRLWQLSGIPCSHACRCLEEL  588 (701)
Q Consensus       559 V~l~~~tCsC~~~~~~GiPC~Halav~~~~  588 (701)
                      +++...+|||..|+..|.||+|++|++...
T Consensus        10 ~~~~~~~CsC~~~~~~~~~CkHi~av~~~~   39 (40)
T PF04434_consen   10 VSIEQASCSCPYFQFRGGPCKHIVAVLLAL   39 (40)
T ss_pred             ccccccEeeCCCccccCCcchhHHHHHHhh
Confidence            667789999999999999999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=96.27  E-value=0.0024  Score=59.73  Aligned_cols=80  Identities=21%  Similarity=0.116  Sum_probs=66.5

Q ss_pred             cceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHHHHH
Q 043802          305 RNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLEAI  384 (701)
Q Consensus       305 ~~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai  384 (701)
                      ++.+.+|-||.+-+-+ ..+...++|.+++  .|.+-|...-+...=..||..+.+....   .|..|+||+.++...|+
T Consensus         1 ~~~w~~DEt~iki~G~-~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~~~---~p~~ivtDk~~aY~~A~   74 (140)
T PF13610_consen    1 GDSWHVDETYIKIKGK-WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRHRG---EPRVIVTDKLPAYPAAI   74 (140)
T ss_pred             CCEEEEeeEEEEECCE-EEEEEEeeccccc--chhhhhhhhcccccceeeccccceeecc---ccceeecccCCccchhh
Confidence            3678999999986543 3455778899999  8999999999988888999888777652   38999999999999999


Q ss_pred             HhhCCC
Q 043802          385 EDCIPL  390 (701)
Q Consensus       385 ~~vfP~  390 (701)
                      ++++|.
T Consensus        75 ~~l~~~   80 (140)
T PF13610_consen   75 KELNPE   80 (140)
T ss_pred             hhcccc
Confidence            999876

>PHA02517 putative transposase OrfB; Reviewed

Probab=96.09  E-value=0.39  Score=50.21  Aligned_cols=151  Identities=15%  Similarity=0.073  Sum_probs=83.7

Q ss_pred             HHHHHHhhhhhc-CCCCChHHHHHHHHHHhCCcCChhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 043802          196 WIAANYLHLWKQ-NPETASVEVKQQIIQTFGVVCPEWKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIVVLE  274 (701)
Q Consensus       196 ~ia~~~~~~i~~-~~~~~~~~i~~~l~~~~g~~~s~~~~~rak~~a~~~~~g~~~~~y~~L~~~~~~l~~~NPg~~~~v~  274 (701)
                      .+.+.+.+++.. .+.+..+.|...|++. |+.++.++++|..+.+     |-.... .      ..-.....+-...  
T Consensus        30 ~l~~~I~~i~~~~~~~~G~r~I~~~L~~~-g~~vs~~tV~Rim~~~-----gl~~~~-~------~k~~~~~~~~~~~--   94 (277)
T PHA02517         30 WLKSEILRVYDENHQVYGVRKVWRQLNRE-GIRVARCTVGRLMKEL-----GLAGVL-R------GKKVRTTISRKAV--   94 (277)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHhc-CcccCHHHHHHHHHHc-----CCceEe-c------CCCcCCCCCCCCC--
Confidence            455666666654 5788999999988755 9999999988754332     210000 0      0000000000000  


Q ss_pred             eccCCCCcccceEEEEEeeCcchhHHhhcCcceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHH
Q 043802          275 TKDEDSGCSKIFHRMFVCFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFF  354 (701)
Q Consensus       275 ~~~~~~~~~~~f~~~F~~~~~~~~~f~~~~~~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wf  354 (701)
                      .  ..+    .+.+-|-+         .....+++.|.|+..... +..+..+.+|...+ +++|+.+...++.+...-+
T Consensus        95 ~--~~n----~~~r~f~~---------~~pn~~w~~D~t~~~~~~-g~~yl~~iiD~~sr-~i~~~~~~~~~~~~~~~~~  157 (277)
T PHA02517         95 A--APD----RVNRQFVA---------TRPNQLWVADFTYVSTWQ-GWVYVAFIIDVFAR-RIVGWRVSSSMDTDFVLDA  157 (277)
T ss_pred             C--CCC----cccCCCCC---------CCCCCeEEeceeEEEeCC-CCEEEEEecccCCC-eeeecccCCCCChHHHHHH
Confidence            0  000    11221211         124578999999986543 55677777887666 4678888887777755444


Q ss_pred             HHHHHHHcccCCCCCeEEEecCCchH
Q 043802          355 LNNLNRALRRENGEGLCIITDGDNGV  380 (701)
Q Consensus       355 l~~l~~~~~~~~~~~~~iisD~~~~l  380 (701)
                      |+......+...  +.+|.||+....
T Consensus       158 l~~a~~~~~~~~--~~i~~sD~G~~y  181 (277)
T PHA02517        158 LEQALWARGRPG--GLIHHSDKGSQY  181 (277)
T ss_pred             HHHHHHhcCCCc--CcEeeccccccc
Confidence            444433333222  467789998754

>PRK14702 insertion element IS2 transposase InsD; Provisional

Probab=95.90  E-value=0.85  Score=47.36  Aligned_cols=151  Identities=10%  Similarity=-0.005  Sum_probs=90.2

Q ss_pred             ccchHHHHHHHhhhhhcCCCCChHHHHHHHHHH---hCC-cCChhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhC
Q 043802          191 KCTSKWIAANYLHLWKQNPETASVEVKQQIIQT---FGV-VCPEWKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERIN  266 (701)
Q Consensus       191 ~~ss~~ia~~~~~~i~~~~~~~~~~i~~~l~~~---~g~-~~s~~~~~rak~~a~~~~~g~~~~~y~~L~~~~~~l~~~N  266 (701)
                      ......+...+.+....++.+..+.|...|++.   .|+ .++.+.++|..+.+     |-.           ...+...
T Consensus         7 ~~~~~~l~~~I~~~~~~~~~yG~rri~~~L~~~~~~~g~~~v~~krV~rlmr~~-----gL~-----------~~~r~~~   70 (262)
T PRK14702          7 HTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQN-----ALL-----------LERKPAV   70 (262)
T ss_pred             CcchHHHHHHHHHHHHhCcccChHHHHHHHHhhhcccCccccCHHHHHHHHHHh-----CCc-----------cccCCCC
Confidence            334455666777776777889999999988875   377 48988888764432     100           0000000


Q ss_pred             CCcEEEEEeccCCCCcccceEEEEEeeCcchhHHhhcCcceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeec-
Q 043802          267 SHNIVVLETKDEDSGCSKIFHRMFVCFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEI-  345 (701)
Q Consensus       267 Pg~~~~v~~~~~~~~~~~~f~~~F~~~~~~~~~f~~~~~~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~-  345 (701)
                      +.+.        ..    ... .|.         ...-..+++.|-||.....++.++.++-+|...+ .+|||++... 
T Consensus        71 ~~~~--------~~----~~~-~~~---------~~~pn~~W~~DiT~~~~~~g~~~Yl~~viD~~sR-~ivg~~is~~~  127 (262)
T PRK14702         71 PPSK--------RA----HTG-RVA---------VKESNQRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGG  127 (262)
T ss_pred             CCCC--------cC----CCC-ccc---------cCCCCCEEEeeeEEEEecCCcEEEEEEEEecccc-eeeeEEeccCc
Confidence            0000        00    000 000         1114578999999987655557888888998877 6789999874 


Q ss_pred             CchhhHHHHHHHH-HHHccc-CCCCCeEEEecCCchH
Q 043802          346 EDFTSWYFFLNNL-NRALRR-ENGEGLCIITDGDNGV  380 (701)
Q Consensus       346 E~~es~~wfl~~l-~~~~~~-~~~~~~~iisD~~~~l  380 (701)
                      .+.+.-.-+|+.. ....+. .+..|.+|.||+...-
T Consensus       128 ~~~~~v~~~l~~A~~~~~~~~~~~~~~iihSD~Gsqy  164 (262)
T PRK14702        128 FNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCY  164 (262)
T ss_pred             CCHHHHHHHHHHHHHHHhcccCCCCCeEEEcCCCccc
Confidence            5666655555543 333221 1224789999998743

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=95.33  E-value=0.25  Score=55.75  Aligned_cols=130  Identities=13%  Similarity=0.153  Sum_probs=93.2

Q ss_pred             cCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHHHHHHhhCCCcceeechhhHHHHHHHhCC-CCchhHHHHHHhhc
Q 043802          345 IEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLVQFP-DPPVKDLFWAACRS  423 (701)
Q Consensus       345 ~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~~-~~~~~~~~~~~~~a  423 (701)
                      ..+.+-|.-+++.+-+.....+..-+++.+|+...|.+++. .+|.+.|.+..+|+.+.+.+.++ .+.+...++++.+.
T Consensus       235 ~~~~~~~~~v~~~i~~~Y~~~~~~~iiingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~~~~~~~~~~al~~  313 (470)
T PF06782_consen  235 ESAEEFWEEVLDYIYNHYDLDKTTKIIINGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHDPELKEKIRKALKK  313 (470)
T ss_pred             cchHHHHHHHHHHHHHhcCcccceEEEEeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence            45677899888888888765542346788999999988776 99999999999999999999886 45777778888888


Q ss_pred             CCHHHHHHHHHHHHhcC--c-------hhHHHHhhccCccccc--cccCccccccccccchhhhHhhHhh
Q 043802          424 TSEVQFTRYIKMIQSSS--I-------ECHQWLFQTQWKKWAL--HCMPVWVKCTNVTIMLTVYLRNSFA  482 (701)
Q Consensus       424 ~~~~eFe~~~~~l~~~~--~-------~~~~~L~~~~~e~W~~--a~~~~~~~~~~~T~N~~Es~N~~lk  482 (701)
                      ....+++..++.+....  +       ++..||..    +|..  .|..   +-|.......|+.++.+.
T Consensus       314 ~d~~~l~~~L~~~~~~~~~~~~~~~i~~~~~Yl~~----n~~~i~~y~~---~~~~~g~g~ee~~~~~~s  376 (470)
T PF06782_consen  314 GDKKKLETVLDTAESCAKDEEERKKIRKLRKYLLN----NWDGIKPYRE---REGLRGIGAEESVSHVLS  376 (470)
T ss_pred             cCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH----CHHHhhhhhh---ccCCCccchhhhhhhHHH
Confidence            88899888888876542  2       23445554    3332  1111   123344455777777664

>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition

Probab=94.93  E-value=0.11  Score=54.05  Aligned_cols=148  Identities=11%  Similarity=0.042  Sum_probs=90.1

Q ss_pred             cchHHHHHHHhhhhhcCCCCChHHHHHHHHHHhCCcCChhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCcEE
Q 043802          192 CTSKWIAANYLHLWKQNPETASVEVKQQIIQTFGVVCPEWKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIV  271 (701)
Q Consensus       192 ~ss~~ia~~~~~~i~~~~~~~~~~i~~~l~~~~g~~~s~~~~~rak~~a~~~~~g~~~~~y~~L~~~~~~l~~~NPg~~~  271 (701)
                      ++.+.+|-.+.....  -.++...|.+.+.+. |+.+|...+.+.-.++.+.+           ....+.|.+.      
T Consensus         4 ~g~~~~a~i~~l~~~--~~lp~~r~~~~~~~~-G~~is~~ti~~~~~~~~~~l-----------~~~~~~l~~~------   63 (271)
T PF03050_consen    4 YGPSLLALIAYLKYV--YHLPLYRIQQMLEDL-GITISRGTIANWIKRVAEAL-----------KPLYEALKEE------   63 (271)
T ss_pred             CCHHHHHHHHHHHhc--CCCCHHHHhhhhhcc-ceeeccchhHhHhhhhhhhh-----------hhhhhhhhhh------
Confidence            344555544433332  455667777777777 99999999887765554321           1111111111      


Q ss_pred             EEEeccCCCCcccceEEEEEeeCcchhHHhhcCcceEEEeceEEe----ccc-CceEEEEEEecCCCCeeEEEEEEeecC
Q 043802          272 VLETKDEDSGCSKIFHRMFVCFHEPAFTFKMNCRNFIAVDGWVIN----SVH-KSVMLVAAALDGNNDILPIALAEVEIE  346 (701)
Q Consensus       272 ~v~~~~~~~~~~~~f~~~F~~~~~~~~~f~~~~~~vi~iD~T~~~----~~y-~~~ll~a~g~d~~~~~~pla~alv~~E  346 (701)
                                                  . . -.+|+.+|-|...    ++. ++-+-++++-+      .+.|.+.++-
T Consensus        64 ----------------------------~-~-~~~~~~~DET~~~vl~~~~g~~~~~Wv~~~~~------~v~f~~~~sR  107 (271)
T PF03050_consen   64 ----------------------------L-R-SSPVVHADETGWRVLDKGKGKKGYLWVFVSPE------VVLFFYAPSR  107 (271)
T ss_pred             ----------------------------c-c-ccceeccCCceEEEeccccccceEEEeeeccc------eeeeeecccc
Confidence                                        0 1 3578889988877    433 33444444433      5556666655


Q ss_pred             chhhHHHHHHHHHHHcccCCCCCeEEEecCCchHHHHHHhhCCCcceeechhhHHHHHHHhCCC
Q 043802          347 DFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLEAIEDCIPLAHCRQCCCSIYNQMLVQFPD  410 (701)
Q Consensus       347 ~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~~~  410 (701)
                      +.+...-+|       ++.   .-+++||+-.+-..     +..+.|+.|+.|+.+.+.+....
T Consensus       108 ~~~~~~~~L-------~~~---~GilvsD~y~~Y~~-----~~~~~hq~C~AH~~R~~~~~~~~  156 (271)
T PF03050_consen  108 SSKVIKEFL-------GDF---SGILVSDGYSAYNK-----LAGITHQLCWAHLRRDFQDAAES  156 (271)
T ss_pred             cccchhhhh-------ccc---ceeeeccccccccc-----ccccccccccccccccccccccc
Confidence            555544443       332   45899999987655     23889999999999999886654

This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=94.29  E-value=0.093  Score=53.92  Aligned_cols=93  Identities=16%  Similarity=0.142  Sum_probs=68.2

Q ss_pred             EEEeceEEecccCceEEEEEEecC--CCCeeEEEEEEeecCchhhHHHHHHHH-HHHcccCCCCCeEEEecCCchHHHHH
Q 043802          308 IAVDGWVINSVHKSVMLVAAALDG--NNDILPIALAEVEIEDFTSWYFFLNNL-NRALRRENGEGLCIITDGDNGVLEAI  384 (701)
Q Consensus       308 i~iD~T~~~~~y~~~ll~a~g~d~--~~~~~pla~alv~~E~~es~~wfl~~l-~~~~~~~~~~~~~iisD~~~~l~~Ai  384 (701)
                      |+||=+.....+..  ++.+.+|.  +++.   -++++++-+.++..-||..+ -.....   ...+|++|...+...||
T Consensus         1 lgiDE~~~~~g~~~--y~t~~~d~~~~~~~---il~i~~~r~~~~l~~~~~~~~~~~~~~---~v~~V~~Dm~~~y~~~~   72 (249)
T PF01610_consen    1 LGIDEFAFRKGHRS--YVTVVVDLDTDTGR---ILDILPGRDKETLKDFFRSLYPEEERK---NVKVVSMDMSPPYRSAI   72 (249)
T ss_pred             CeEeeeeeecCCcc--eeEEEEECccCCce---EEEEcCCccHHHHHHHHHHhCcccccc---ceEEEEcCCCccccccc
Confidence            57887777654443  44444554  3332   23578888888888777766 333222   37899999999999999


Q ss_pred             HhhCCCcceeechhhHHHHHHHhC
Q 043802          385 EDCIPLAHCRQCCCSIYNQMLVQF  408 (701)
Q Consensus       385 ~~vfP~a~h~~C~~Hi~~n~~~~~  408 (701)
                      ++.||+|.+..-.|||++++.+.+
T Consensus        73 ~~~~P~A~iv~DrFHvvk~~~~al   96 (249)
T PF01610_consen   73 REYFPNAQIVADRFHVVKLANRAL   96 (249)
T ss_pred             cccccccccccccchhhhhhhhcc
Confidence            999999999999999999887744

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication

Probab=92.92  E-value=0.21  Score=54.13  Aligned_cols=59  Identities=10%  Similarity=0.190  Sum_probs=52.5

Q ss_pred             ccccCCceeCCHHHHHHHHHHHHHHcCeEEEEeeeCC-ceEEEEEecCCCceEEEEEEec
Q 043802          110 MIMRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENGP-DLIHLECSSLRCDWKIVGAKIS  168 (701)
Q Consensus       110 ~~~~vG~~F~s~~e~k~av~~yAi~~gf~~~~~ks~~-~r~~~~C~~~gCpwrv~as~~~  168 (701)
                      +.-..+..|++.++-+.+|..|-+..+..|..+.|-+ +.|+|.|....|||+|.++..+
T Consensus        20 ~~~~~~~~f~tl~~wy~v~ndyefq~rcpiilknsh~nkhftfachlk~c~fkillsy~g   79 (496)
T PF04684_consen   20 PQSAQARKFPTLEAWYNVINDYEFQSRCPIILKNSHRNKHFTFACHLKNCPFKILLSYCG   79 (496)
T ss_pred             cccccccCCCcHHHHHHHHhhhhhhhcCceeecccccccceEEEeeccCCCceeeeeecc
Confidence            3445678899999999999999999999999988875 7899999999999999998764

ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture []. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 Saccharomyces cerevisiae (P14164 from SWISSPROT)) []. The N-terminal two thirds of the protein are necessary for DNA binding, and the N terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure [].; GO: 0003677 DNA binding, 0006338 chromatin remodeling, 0005634 nucleus

>PRK09409 IS2 transposase TnpB; Reviewed

Probab=92.87  E-value=2.3  Score=45.03  Aligned_cols=146  Identities=11%  Similarity=0.028  Sum_probs=87.6

Q ss_pred             HHHHHHhhhhhcCCCCChHHHHHHHHHHh---CC-cCChhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCcEE
Q 043802          196 WIAANYLHLWKQNPETASVEVKQQIIQTF---GV-VCPEWKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIV  271 (701)
Q Consensus       196 ~ia~~~~~~i~~~~~~~~~~i~~~l~~~~---g~-~~s~~~~~rak~~a~~~~~g~~~~~y~~L~~~~~~l~~~NPg~~~  271 (701)
                      .+...+.++....+.+..+.|...|++..   |+ .++.++++|..+.+     |-..           ......+.+. 
T Consensus        51 ~l~~~I~~i~~~~~~yG~Rri~~~L~~~g~~~g~~~v~~k~V~RlMr~~-----Gl~~-----------~~~~~~~~~~-  113 (301)
T PRK09409         51 DVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQN-----ALLL-----------ERKPAVPPSK-  113 (301)
T ss_pred             HHHHHHHHHHHhCccCCHHHHHHHHHhhhcccCccccCHHHHHHHHHHc-----CCcc-----------cccCCCCCCC-
Confidence            45556666666678899999999887652   66 58888887754332     1000           0000000000 


Q ss_pred             EEEeccCCCCcccceEEEEEeeCcchhHHhhcCcceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeec-Cchhh
Q 043802          272 VLETKDEDSGCSKIFHRMFVCFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEI-EDFTS  350 (701)
Q Consensus       272 ~v~~~~~~~~~~~~f~~~F~~~~~~~~~f~~~~~~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~-E~~es  350 (701)
                             ..    .... |.         ...-..+++.|-||....-++.++.++-+|...+ .+|||++... .+.+.
T Consensus       114 -------~~----~~~~-~~---------~~~pN~~W~tDiT~~~~~~g~~~Yl~~ViD~~sR-~ivg~~~s~~~~~~~~  171 (301)
T PRK09409        114 -------RA----HTGR-VA---------VKESNQRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSET  171 (301)
T ss_pred             -------CC----CCCC-cC---------CCCCCCEEEeeeEEEEeCCCCEEEEEEEeecccc-eEEEEEeccCCCCHHH
Confidence                   00    0000 00         1125689999999986654557888888998887 6899999876 56666


Q ss_pred             HHHHHHH-HHHHccc-CCCCCeEEEecCCchH
Q 043802          351 WYFFLNN-LNRALRR-ENGEGLCIITDGDNGV  380 (701)
Q Consensus       351 ~~wfl~~-l~~~~~~-~~~~~~~iisD~~~~l  380 (701)
                      -.-+|+. +....+. .+..|.+|.||+...-
T Consensus       172 v~~~l~~a~~~~~~~~~~~~~~iihSDrGsqy  203 (301)
T PRK09409        172 VQDVMLGAVERRFGNDLPSSPVEWLTDNGSCY  203 (301)
T ss_pred             HHHHHHHHHHHHhccCCCCCCcEEecCCCccc
Confidence            5556654 4444332 1224789999998743

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=92.61  E-value=0.27  Score=38.55  Aligned_cols=39  Identities=10%  Similarity=0.106  Sum_probs=32.5

Q ss_pred             ceEEEEEecCCCceEEEEEEecCCCeEEEEecCCCcccC
Q 043802          147 DLIHLECSSLRCDWKIVGAKISTGNSFIVKDISLTHACH  185 (701)
Q Consensus       147 ~r~~~~C~~~gCpwrv~as~~~~~~~w~V~~~~~~Hnc~  185 (701)
                      .|--++|+..+||++-.+.+..++....++++.++|||+
T Consensus        21 pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen   21 PRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             EEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             eeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            466799999999999999998878888899999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=89.96  E-value=3.9  Score=40.59  Aligned_cols=85  Identities=19%  Similarity=0.120  Sum_probs=62.0

Q ss_pred             CcceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHHHH
Q 043802          304 CRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLEA  383 (701)
Q Consensus       304 ~~~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~A  383 (701)
                      -++++.||-||++.+-+..- .-.++|.+|  .+|-+-|...-+...=.-||..+++..    +.|.+|+||+.+....|
T Consensus        69 ~~~~w~vDEt~ikv~gkw~y-lyrAid~~g--~~Ld~~L~~rRn~~aAk~Fl~kllk~~----g~p~v~vtDka~s~~~A  141 (215)
T COG3316          69 AGDSWRVDETYIKVNGKWHY-LYRAIDADG--LTLDVWLSKRRNALAAKAFLKKLLKKH----GEPRVFVTDKAPSYTAA  141 (215)
T ss_pred             cccceeeeeeEEeeccEeee-hhhhhccCC--CeEEEEEEcccCcHHHHHHHHHHHHhc----CCCceEEecCccchHHH
Confidence            34678899999876544332 223445554  467788888877777777888777765    23899999999999999


Q ss_pred             HHhhCCCcceee
Q 043802          384 IEDCIPLAHCRQ  395 (701)
Q Consensus       384 i~~vfP~a~h~~  395 (701)
                      +.++-+.+.|+-
T Consensus       142 ~~~l~~~~ehr~  153 (215)
T COG3316         142 LRKLGSEVEHRT  153 (215)
T ss_pred             HHhcCcchheec
Confidence            999998776664

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.29  E-value=1.4  Score=34.21  Aligned_cols=46  Identities=13%  Similarity=0.220  Sum_probs=25.5

Q ss_pred             cCeEEEEeeeCCceEEEEEecC---CCceEEEEEEecCCCeEEEEecCCCccc
Q 043802          135 EGFKLCIIENGPDLIHLECSSL---RCDWKIVGAKISTGNSFIVKDISLTHAC  184 (701)
Q Consensus       135 ~gf~~~~~ks~~~r~~~~C~~~---gCpwrv~as~~~~~~~w~V~~~~~~Hnc  184 (701)
                      .|+.|...+.........|...   +|+++|...  .+.  -.|.....+|||
T Consensus        14 ~Gy~y~~~~~~~~~~~WrC~~~~~~~C~a~~~~~--~~~--~~~~~~~~~HnH   62 (62)
T PF04500_consen   14 DGYRYYFNKRNDGKTYWRCSRRRSHGCRARLITD--AGD--GRVVRTNGEHNH   62 (62)
T ss_dssp             TTEEEEEEEE-SS-EEEEEGGGTTS----EEEEE----T--TEEEE-S---SS
T ss_pred             CCeEEECcCCCCCcEEEEeCCCCCCCCeEEEEEE--CCC--CEEEECCCccCC
Confidence            4778887777788889999874   899999987  122  345556688987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=85.38  E-value=4.5  Score=35.77  Aligned_cols=77  Identities=10%  Similarity=-0.077  Sum_probs=56.5

Q ss_pred             CcceEEEeceEEec-ccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHHH
Q 043802          304 CRNFIAVDGWVINS-VHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLE  382 (701)
Q Consensus       304 ~~~vi~iD~T~~~~-~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~  382 (701)
                      ....+.+|.++... ..++..+..+.+|..-+. .+++.+-..++.+.+..+|.......+...  |.+|+||+..+...
T Consensus         5 p~~~~~~D~~~~~~~~~~~~~~~~~~iD~~S~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--p~~i~tD~g~~f~~   81 (120)
T PF00665_consen    5 PGERWQIDFTPMPIPDKGGRVYLLVFIDDYSRF-IYAFPVSSKETAEAALRALKRAIEKRGGRP--PRVIRTDNGSEFTS   81 (120)
T ss_dssp             TTTEEEEEEEEETGGCTT-CEEEEEEEETTTTE-EEEEEESSSSHHHHHHHHHHHHHHHHS-SE---SEEEEESCHHHHS
T ss_pred             CCCEEEEeeEEEecCCCCccEEEEEEEECCCCc-EEEEEeeccccccccccccccccccccccc--ceeccccccccccc
Confidence            45789999996663 456688899999987664 557777777788888888876666655543  79999999998875


Q ss_pred             H
Q 043802          383 A  383 (701)
Q Consensus       383 A  383 (701)
                      .
T Consensus        82 ~   82 (120)
T PF00665_consen   82 H   82 (120)
T ss_dssp             H
T ss_pred             c
Confidence            3

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

>smart00774 WRKY DNA binding domain

Probab=84.60  E-value=1.3  Score=34.55  Aligned_cols=38  Identities=13%  Similarity=0.072  Sum_probs=32.0

Q ss_pred             ceEEEEEec-CCCceEEEEEEecCCCeEEEEecCCCccc
Q 043802          147 DLIHLECSS-LRCDWKIVGAKISTGNSFIVKDISLTHAC  184 (701)
Q Consensus       147 ~r~~~~C~~-~gCpwrv~as~~~~~~~w~V~~~~~~Hnc  184 (701)
                      -|--++|+. .|||++=.+.+..+++...++++.++|||
T Consensus        21 pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774       21 PRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             cceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            455689998 89999988888766777788899999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF13565 HTH_32: Homeodomain-like domain

Probab=81.05  E-value=3.6  Score=33.61  Aligned_cols=42  Identities=12%  Similarity=0.283  Sum_probs=35.7

Q ss_pred             HHHHHHHhhhhhcCCCCChHHHHHHHHHHhCCcC--ChhHHHHH
Q 043802          195 KWIAANYLHLWKQNPETASVEVKQQIIQTFGVVC--PEWKIFKA  236 (701)
Q Consensus       195 ~~ia~~~~~~i~~~~~~~~~~i~~~l~~~~g~~~--s~~~~~ra  236 (701)
                      ..+.+.+.+.+..+|.+++.+|...|.+.+|+.+  |.+.+||.
T Consensus        33 ~e~~~~i~~~~~~~p~wt~~~i~~~L~~~~g~~~~~S~~tv~R~   76 (77)
T PF13565_consen   33 PEQRERIIALIEEHPRWTPREIAEYLEEEFGISVRVSRSTVYRI   76 (77)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCccHhHHHHh
Confidence            4445677788888999999999999999999876  99999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	701
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 4e-11
 Identities = 89/643 (13%), Positives = 190/643 (29%), Gaps = 198/643 (30%)

Query: 95  HHTTGFLFEDNVHHKMIMRQGQLFRDEFQFRRAVEVFSLREGFKL---CIIENGPDLIHL 151
           HH          HH M    G+    ++Q++  + VF   + F     C  ++  D+   
Sbjct: 2   HH----------HHHMDFETGEH---QYQYKDILSVF--EDAFVDNFDC--KDVQDMPKS 44

Query: 152 ECSSLRCDWKIVGAKISTGNSFIVKDISLTHACHIKRAFKCTSKWIAANYLHLWKQNPET 211
             S    D  I+ +K +   +  +    L+    + + F    + +  NY  L       
Sbjct: 45  ILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQKF--VEEVLRINYKFLM----SP 97

Query: 212 ASVEVKQQIIQTFGVVCPEWKIFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNIV 271
              E +Q  + T   +    +++       Q+  K +V       +L+  +  +     V
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLY----NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 272 VLETKDEDSGCSKIFHRMFVCFHEPAFTFKMNCRNFIAVDGWV-INSVHKSVMLVA---- 326
           +++      G  K +  + VC        KM+ + F     W+ + + +    ++     
Sbjct: 154 LIDG---VLGSGKTWVALDVCLSYK-VQCKMDFKIF-----WLNLKNCNSPETVLEMLQK 204

Query: 327 --AALDGNNDILP-----IALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDG--D 377
               +D N          I L    I+               L         ++     +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---------LVLLNVQN 255

Query: 378 NGVLEAIEDCIPLAHCRQCCCSIYNQMLVQFPDPPVKDLFWAACRSTSEVQFTRYIKMIQ 437
                A         C+         +L+      V D   AA  +T+ +          
Sbjct: 256 AKAWNAFN-----LSCK---------ILLTTRFKQVTDFLSAA--TTTHI---------- 289

Query: 438 SSSIECHQWLFQTQWKKWALHCMPVWVKCTNVTIMLTVYLRNSFAKFFSLSIAD---RFA 494
             S++ H     T  +  +L                         K+      D      
Sbjct: 290 --SLDHHSMTL-TPDEVKSL-----------------------LLKYLDCRPQDLPREVL 323

Query: 495 AIS----SFIADTYERRRLSGW-NWLR---NKITPSVQQQIRNRVIQGQQIRILYSTGRQ 546
             +    S IA++  R  L+ W NW     +K+T  ++  +    ++  + R ++    +
Sbjct: 324 TTNPRRLSIIAESI-RDGLATWDNWKHVNCDKLTTIIESSLNV--LEPAEYRKMF---DR 377

Query: 547 MKV--EDTDSMTYEVDITSMTCTCRLWQLSGIPCSHACRCLEELGENIEDNVHQLFSMDQ 604
           + V             I ++     +W              + +  ++   V++L     
Sbjct: 378 LSVFPPS-------AHIPTIL-LSLIWF-------------DVIKSDVMVVVNKLHK--- 413

Query: 605 YRTTYASGMDKLPERSKWQLKLCDEILPPSALDNTSFIADDLYDQTLVPTQNDTKETH-- 662
                 S ++K P+ S   +                     +Y +  V  +N+    H  
Sbjct: 414 -----YSLVEKQPKESTISI-------------------PSIYLELKVKLENE-YALHRS 448

Query: 663 -VEASGAKVSVD-NKFVSSSI--YVYLQYANISNSYLEHLHLS 701
            V+      + D +  +   +  Y Y        S++ H HL 
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFY--------SHIGH-HLK 482

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 3e-09
 Identities = 84/574 (14%), Positives = 173/574 (30%), Gaps = 141/574 (24%)

Query: 1   DLMDTFGQNDVSDADDDDVINNLHTCIN-------LIASAIDEGTGQ--WV-REHNKGAT 50
           D++  F    V + D  DV +   + ++       +++     GT +  W      +   
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 51  QSYSDDEEDFIPDNNHSVTHLEGYCSDTDA-TVLYIGTIPRCREIHHTTGFLFEDNVHHK 109
           Q + ++      +    ++ ++         T +YI    R          L+ DN    
Sbjct: 80  QKFVEEVLR--INYKFLMSPIKTEQRQPSMMTRMYIEQRDR----------LYNDN---- 123

Query: 110 MIMRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKIST 169
                 Q+F   +   R      LR+   L  +    +++            I G    +
Sbjct: 124 ------QVFAK-YNVSRLQPYLKLRQ--ALLELRPAKNVL------------IDGVL-GS 161

Query: 170 GNSFIVKDISLTHACHIKRAFK---------CTSKWIAANYLHLWKQ--NPETASVEVKQ 218
           G +++  D+ L++    K  FK          + + +      L  Q     T+  +   
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 219 QIIQTFGVVCPEWK-IFKAEKRAQQLLGKDHVQGYTRLTQLKTEIERINSHNI---VVLE 274
            I      +  E + + K++     LL   +VQ            +  N+ N+   ++L 
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ----------NAKAWNAFNLSCKILLT 271

Query: 275 TKDE---DSGCSKIFHRMFVCFHEPAFTFKMNCRNFIAVDGWVINSVHKSVMLVAAALDG 331
           T+ +   D   +     + +  H    T     ++ +    ++         L    L  
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLL--KYLDCRPQD---LPREVLTT 325

Query: 332 NNDILPIAL---AEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVLEAIEDCI 388
           N    P  L   AE   +   +W  + +     L                 ++E+  + +
Sbjct: 326 N----PRRLSIIAESIRDGLATWDNWKHVNCDKLTT---------------IIESSLNVL 366

Query: 389 PLAHCRQCCCSIYNQMLVQFPD----PP-VKDLFWAACRSTSEVQFTRYIKMIQSSSIEC 443
             A  R+     +   L  FP     P  +  L W               K+ + S +E 
Sbjct: 367 EPAEYRKM----F-DRLSVFPPSAHIPTILLSLIWFD--VIKSDVMVVVNKLHKYSLVEK 419

Query: 444 ---------HQWLFQTQWK---KWALHCMPV----WVKCTNVTIMLTVYLRNSFAKFFS- 486
                         + + K   ++ALH   V      K  +   ++  YL   F      
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 487 -LSIADRFAAISSFIADTYERRRLSGWNWLRNKI 519
            L   +    ++ F      R     + +L  KI
Sbjct: 480 HLKNIEHPERMTLF------RMVFLDFRFLEQKI 507

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 5e-04
 Identities = 64/499 (12%), Positives = 135/499 (27%), Gaps = 132/499 (26%)

Query: 8   QNDVSDADDDDV-----INNLHTCINLIASAID------EGTGQWVREHNKGATQSYSDD 56
            ND       +V        L   +  +  A +       G+G+        A       
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-----ALDVCLSY 174

Query: 57  E-EDFIPDNNHSVTHLEGYCSDTDA------TVLYIGTIPRCREIHHTTGFLFEDNVHHK 109
           + +  +      +      C+  +        +LY           H++      +    
Sbjct: 175 KVQCKMDFKIFWLNL--KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 110 MIMRQGQLFRDEFQFRRAVEVFSLREGFKLCIIENGPDLIHLECSSLRCDWKIVGAKIST 169
            + R   L + +  +              L ++ N  +       +L C  KI+   ++T
Sbjct: 233 ELRR---LLKSK-PYENC-----------LLVLLNVQNAKAWNAFNLSC--KIL---LTT 272

Query: 170 GNSFIVKDISLTHACHI-----KRAF-KCTSKWIAANYLHLWKQN-PETASVEVKQQIIQ 222
               +   +S     HI              K +   YL    Q+ P    +    + + 
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLS 331

Query: 223 TFGVVCPE-------WKIFKAEKRAQ-------QLLGKDHVQGYTRLTQLKTEIERINSH 268
                  +       WK    +K           L   ++ + + RL+        I + 
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTI 390

Query: 269 NIVVL--ETKDED-----------SGCSKIFHRMFVCFHEPAFTFKMNCRNFIAVDGWVI 315
            + ++  +    D           S   K      +         K+   N  A+     
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----- 445

Query: 316 NSVHKSVM---LVAAALDGNNDILP---------IA--LAEVEIED----FTSWYFFLNN 357
              H+S++    +    D ++ I P         I   L  +E  +    F   +     
Sbjct: 446 ---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502

Query: 358 LNRALRRE----NGEGLCI------------ITDGDN---GVLEAIEDCIPLA----HCR 394
           L + +R +    N  G  +            I D D     ++ AI D +P       C 
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562

Query: 395 QCCCSIYNQMLVQFPDPPV 413
           +    +  ++ +   D  +
Sbjct: 563 KYTDLL--RIALMAEDEAI 579

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	701
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	91.15
3hot_A	345	Transposable element mariner, complete CDS; protei	90.93
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	90.48
3l3u_A	163	POL polyprotein; DNA integration, AIDS, integrase,	81.81

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=91.15  E-value=0.32  Score=38.96  Aligned_cols=40  Identities=13%  Similarity=0.183  Sum_probs=34.7

Q ss_pred             ceEEEEEecCCCceEEEEEEecCCCeEEEEecCCCcccCC
Q 043802          147 DLIHLECSSLRCDWKIVGAKISTGNSFIVKDISLTHACHI  186 (701)
Q Consensus       147 ~r~~~~C~~~gCpwrv~as~~~~~~~w~V~~~~~~Hnc~~  186 (701)
                      -|-.++|+..|||++-.+.+...+....++++.++|||+.
T Consensus        37 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~   76 (78)
T 1wj2_A           37 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDL   76 (78)
T ss_dssp             CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred             eeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCC
Confidence            3556899999999999999987777788889999999975

>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*

Probab=90.93  E-value=5  Score=41.42  Aligned_cols=59  Identities=19%  Similarity=0.198  Sum_probs=40.2

Q ss_pred             cccCceEEEEEEecCCCCeeEEEEEEee---cCchhhHHHHHHHHHHHcccCC------CCCeEEEecCCc
Q 043802          317 SVHKSVMLVAAALDGNNDILPIALAEVE---IEDFTSWYFFLNNLNRALRREN------GEGLCIITDGDN  378 (701)
Q Consensus       317 ~~y~~~ll~a~g~d~~~~~~pla~alv~---~E~~es~~wfl~~l~~~~~~~~------~~~~~iisD~~~  378 (701)
                      ..+.+.++++.+.+..|   .+++.+++   .-+.+.|.-+|+.+...+....      +.+.+|+.|...
T Consensus       185 ~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~  252 (345)
T 3hot_A          185 NRFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP  252 (345)
T ss_dssp             CTTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred             cCcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence            34566777777888777   57777776   5678888888887655542110      236899999865

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=90.48  E-value=0.3  Score=38.96  Aligned_cols=40  Identities=18%  Similarity=0.203  Sum_probs=34.9

Q ss_pred             ceEEEEEecCCCceEEEEEEecCCCeEEEEecCCCcccCC
Q 043802          147 DLIHLECSSLRCDWKIVGAKISTGNSFIVKDISLTHACHI  186 (701)
Q Consensus       147 ~r~~~~C~~~gCpwrv~as~~~~~~~w~V~~~~~~Hnc~~  186 (701)
                      -|--++|+..|||++-.+.+..++....++++.++|||+.
T Consensus        34 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~   73 (76)
T 2ayd_A           34 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDM   73 (76)
T ss_dssp             CEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCC
T ss_pred             ceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCC
Confidence            3556899999999999999987777888899999999975

>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...

Probab=81.81  E-value=7.3  Score=35.14  Aligned_cols=66  Identities=14%  Similarity=0.058  Sum_probs=45.4

Q ss_pred             CcceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHH
Q 043802          304 CRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVL  381 (701)
Q Consensus       304 ~~~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~  381 (701)
                      -..++.+|.|+..++     +.++.+|...+.. +++.+ .+++.+...-+|..+....+     +.+|.||+.....
T Consensus         8 p~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~-----~~~i~sD~G~~f~   73 (163)
T 3l3u_A            8 SPGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP-----VKTVHTDNGSNFT   73 (163)
T ss_dssp             CTTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC-----CCEEEECCCGGGG
T ss_pred             CCCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC-----CcEEeecChHhhh
Confidence            346889999998653     5667778777644 66666 45577666666666555543     4789999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	701
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	93.41
d1c6va_	159	Retroviral integrase, catalytic domain {Simian imm	86.06
d1cxqa_	147	Retroviral integrase, catalytic domain {Rous sarco	81.93

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.41  E-value=0.056  Score=40.54  Aligned_cols=40  Identities=13%  Similarity=0.183  Sum_probs=35.3

Q ss_pred             ceEEEEEecCCCceEEEEEEecCCCeEEEEecCCCcccCC
Q 043802          147 DLIHLECSSLRCDWKIVGAKISTGNSFIVKDISLTHACHI  186 (701)
Q Consensus       147 ~r~~~~C~~~gCpwrv~as~~~~~~~w~V~~~~~~Hnc~~  186 (701)
                      -|..++|+..||+++=.+.+..++....++++.++|||+.
T Consensus        30 pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~   69 (71)
T d1wj2a_          30 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDL   69 (71)
T ss_dssp             CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred             ceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCC
Confidence            3667899999999999999988778888889999999975

>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Simian immunodeficiency virus [TaxId: 11723]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Simian immunodeficiency virus [TaxId: 11723]

Probab=86.06  E-value=0.63  Score=40.45  Aligned_cols=64  Identities=14%  Similarity=-0.008  Sum_probs=39.9

Q ss_pred             ceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHH
Q 043802          306 NFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVL  381 (701)
Q Consensus       306 ~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~  381 (701)
                      -++.+|.||+.++|   ++  +.+|.. .-++.|+. +.+++.+.-.-||..+...+   .  +..|.||+.....
T Consensus         5 g~W~~D~t~~~~k~---il--~~vD~~-Sr~~~~~~-~~~~~a~~v~~~l~~~~~~~---~--~~~I~sDnG~~F~   68 (159)
T d1c6va_           5 GTWQMDCTHLEGKI---VI--VAVHVA-SGFIEAEV-IPQETGRQTALFLLKLAGRW---P--ITHLHTDNGANFA   68 (159)
T ss_dssp             TEEEEEEEEETTEE---EE--EEECTT-SCCEEEEE-CSSCSHHHHHHHHHHHHTTS---C--CCEEECCCCSSTT
T ss_pred             CceeeEEEEECCEE---EE--EEEECC-CCeEEEEE-eeccCHHHHHHHHHHHhhcc---C--CceeEecCCCccc
Confidence            36789999987663   33  345654 44567764 45566666666665443322   2  4568999988664

>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Rous sarcoma virus RSV [TaxId: 11886]

Probab=81.93  E-value=2.9  Score=35.30  Aligned_cols=71  Identities=10%  Similarity=-0.075  Sum_probs=43.1

Q ss_pred             CcceEEEeceEEecccCceEEEEEEecCCCCeeEEEEEEeecCchhhHHHHHHHHHHHcccCCCCCeEEEecCCchHH
Q 043802          304 CRNFIAVDGWVINSVHKSVMLVAAALDGNNDILPIALAEVEIEDFTSWYFFLNNLNRALRRENGEGLCIITDGDNGVL  381 (701)
Q Consensus       304 ~~~vi~iD~T~~~~~y~~~ll~a~g~d~~~~~~pla~alv~~E~~es~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~  381 (701)
                      ...++.+|-|+.... ++.-+..+.+|..-+ ++.++. +.+++...-..+|..+....+    .|..|.||......
T Consensus         6 P~~~w~~D~~~~~~~-~~~~~l~v~vD~~Sr-~i~~~~-~~~~t~~~~~~~l~~~~~~~g----~p~~i~sDnG~~F~   76 (147)
T d1cxqa_           6 PLQIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQ-HGRVTSVAAQHHWATAIAVLG----RPKAIKTDNGSCFT   76 (147)
T ss_dssp             CCCEEEEEEEECGGG-TTSCEEEEEEETTTC-CEEEEE-ESSCCHHHHHHHHHHHHHHHC----CCSEEECCSCHHHH
T ss_pred             CCCEEEEEEEEecCC-CCeEEEEEEEecccc-eecccc-cCccchHHHHHHHHHHHHHhC----CCeEEEeccccccc
Confidence            456889998887643 333344566676554 445554 455665554444444434333    37899999987664