Citrus Sinensis ID: 043808

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEccccccEEEEEEccccccccccccEEEEEEcccccccccccHHHHHHHHccccccccccEEEEEccccEEEEcccccEEEEcccccccHHHHHHHHHcccccEEEEEccccccccccEEEEEEccccccccHHHHHHHHHHcccccccccEEEEEccccccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccccccccccccccccccccEEEEEEccccccccccccEEEEEEcccccccccccHHHHHHHHcccccEEcccEEEEccccEEEEEcccHHHEEEcccccccHHHHHHHHHcccHEEEEEEEccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
gygmtetcgvvtvenpllgvqnsgsagrlVAGVEAQIVCvdtlkplppnqvgelwvrgpilmpgyfnneQATKLIidkegwlhtgdlgyfdehgQLFIVDRIKELIkcngfqvapaelegvlvshpeildavvipfpdpeagevpiayvvrspnssltkeDVQKFVVKQVARYKRlrnvtftnsipkttsgKILRRELIAKLRSKI
Flexible Loop (DISEMBL)
GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDtlkplppnqVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRspnssltkedvqKFVVKQvarykrlrnvtftnsipkttsgkilrreLIAKLRSKI
Low Complexity Region (SEG)
GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI
Disordered region (IsUnstruct)
*****ETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL********
Disordered Region (DISOPRED)
GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAK**S**
Disordered Region (DISEMBL)
GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI
Disordered Region (DISPRO)
GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
Q9M0X9	544	4-coumarate--CoA ligase-l	yes	no	1.0	0.378	0.718	7e-86
Q0DV32	552	4-coumarate--CoA ligase-l	yes	no	0.990	0.369	0.713	6e-81
Q84P21	546	4-coumarate--CoA ligase-l	no	no	0.966	0.364	0.557	4e-61
Q84P25	565	4-coumarate--CoA ligase-l	no	no	1.0	0.364	0.533	2e-58
P0C5B6	550	4-coumarate--CoA ligase-l	no	no	1.0	0.374	0.538	2e-58
Q10S72	552	4-coumarate--CoA ligase-l	no	no	1.0	0.373	0.509	4e-57
Q3E6Y4	552	4-coumarate--CoA ligase-l	no	no	1.0	0.373	0.524	3e-56
Q84P23	562	4-coumarate--CoA ligase-l	no	no	0.961	0.352	0.515	1e-55
Q84P26	550	4-coumarate--CoA ligase-l	no	no	0.985	0.369	0.533	1e-54
Q8RU95	598	4-coumarate--CoA ligase-l	no	no	0.956	0.329	0.527	2e-54

>sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1

 Score =  316 bits (809), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 148/206 (71%), Positives = 177/206 (85%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYGMTETCG+V+VE+P LG +NSGSAG L  GVEAQIV V+T K  PPNQ GE+WVRGP 
Sbjct: 339 GYGMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPN 398

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY NN QATK  IDK+ W+HTGDLGYF+E G L++VDRIKELIK  GFQVAPAELEG
Sbjct: 399 MMKGYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQVAPAELEG 458

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +LVSHP+ILDAVVIPFPD EAGEVPIA+VVRSPNSS+T++D+QKF+ KQVA YKRLR V+
Sbjct: 459 LLVSHPDILDAVVIPFPDEEAGEVPIAFVVRSPNSSITEQDIQKFIAKQVAPYKRLRRVS 518

Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
           F + +PK+ +GKILRREL+ ++RSK+
Sbjct: 519 FISLVPKSAAGKILRRELVQQVRSKM 544

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q0DV32|4CLL1_ORYSJ 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica GN=4CLL1 PE=2 SV=2

 Score =  300 bits (767), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 147/206 (71%), Positives = 174/206 (84%), Gaps = 2/206 (0%)

Query: 1   GYGMTETCGVVTVENPLLG-VQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP 59
           GYGMTETCG++++E P  G  +  GS G LV+GVEA+IV + TLK LPPNQVGE+ VRGP
Sbjct: 346 GYGMTETCGIISLEYPEKGQAREFGSTGTLVSGVEAKIVDIKTLKHLPPNQVGEICVRGP 405

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
            +M GYFNN QAT+  I K+GWLHTGDLGYFD  GQLF+VDR+KELIK  GFQ+APAELE
Sbjct: 406 NVMQGYFNNVQATEFTI-KQGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQIAPAELE 464

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNV 179
           G+L+SHPEILDAVVIPFPD +AGEVPIAYVVRSP+SSLT+ DVQKF+ KQVA YKRL+ V
Sbjct: 465 GLLLSHPEILDAVVIPFPDAKAGEVPIAYVVRSPDSSLTEVDVQKFIEKQVAYYKRLKRV 524

Query: 180 TFTNSIPKTTSGKILRRELIAKLRSK 205
           TF  S+PK+ SGKILRR+LIA++RS 
Sbjct: 525 TFVGSVPKSASGKILRRQLIAQVRSS 550

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2

 Score =  234 bits (596), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 111/199 (55%), Positives = 146/199 (73%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TE+ G+    + +   +  G+AG+L A +E +IV   T + L P Q GELW++GP 
Sbjct: 339 GYGLTESTGIGASTDTVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPS 398

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GYF+NE+AT   +D EGWL TGDL Y DE G +F+VDR+KELIK  G+QVAPAELE 
Sbjct: 399 IMKGYFSNEEATSSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVAPAELEA 458

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +L++HPEI DA VIPFPD E G+ P+AYVVR   SSL+++ + +FV KQVA YKR+R V 
Sbjct: 459 LLLTHPEITDAAVIPFPDKEVGQFPMAYVVRKTGSSLSEKTIMEFVAKQVAPYKRIRKVA 518

Query: 181 FTNSIPKTTSGKILRRELI 199
           F +SIPK  SGKILR++LI
Sbjct: 519 FVSSIPKNPSGKILRKDLI 537

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P25|4CLL2_ARATH 4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2

 Score =  225 bits (574), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/206 (53%), Positives = 142/206 (68%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TE+  +          +  G++G L   VE +IV  DT + L  NQ GELW+R P 
Sbjct: 360 GYGLTESTAIAASMFNKEETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRSPT 419

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GYF N++AT   ID EGWL TGDL Y D  G +F+VDR+KELIKCNG+QVAPAELE 
Sbjct: 420 VMKGYFKNKEATASTIDSEGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQVAPAELEA 479

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +L++HPEI DA VIP PD +AG+ P+AY+VR   S+L++ ++  FV KQV+ YK++R VT
Sbjct: 480 LLLAHPEIADAAVIPIPDMKAGQYPMAYIVRKVGSNLSESEIMGFVAKQVSPYKKIRKVT 539

Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
           F  SIPK  SGKILRREL     SK+
Sbjct: 540 FLASIPKNPSGKILRRELTKLTTSKL 565

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P0C5B6|4CLL4_ARATH 4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1

 Score =  225 bits (573), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/206 (53%), Positives = 146/206 (70%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GY +TE+ G     N     +  G+AG L + VEA+IV  +T + +  NQ GELW++GP 
Sbjct: 345 GYALTESNGGGAFTNSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPS 404

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +  GYF N++AT   I+ EGWL TGDL Y DE G LF+VDR+KELIK  G+QV PAELE 
Sbjct: 405 ISKGYFKNQEATNETINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQVPPAELEA 464

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +L++HP+ILDA VIPFPD EAG+ P+AYVVR   S+L+++ V  F+ KQVA YK++R V+
Sbjct: 465 LLITHPDILDAAVIPFPDKEAGQYPMAYVVRKHESNLSEKQVIDFISKQVAPYKKIRKVS 524

Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
           F NSIPKT SGK LR++LI    SK+
Sbjct: 525 FINSIPKTASGKTLRKDLIKLATSKL 550

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q10S72|4CLL4_ORYSJ 4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1

 Score =  221 bits (562), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/206 (50%), Positives = 141/206 (68%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TE+  +    +     +  G+AG L    EA+IV  D+ + LP N+ GELW+RGP 
Sbjct: 347 GYGLTESTAIGASTDSAEESRRYGTAGLLSPNTEAKIVDPDSGEALPVNRTGELWIRGPY 406

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GYF N +AT+  +  +GWL TGDL Y DE G LF+VDR+KELIK  G+QV PAELE 
Sbjct: 407 VMKGYFKNAEATQSTLTPDGWLKTGDLCYIDEDGYLFVVDRLKELIKYKGYQVPPAELEA 466

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +L++HPE+ D  VIPFPD E G+ P+AY+VR   S+L++ +V +FV KQVA YK++R V 
Sbjct: 467 LLLTHPEVTDVAVIPFPDREVGQFPMAYIVRKKGSNLSEREVMEFVAKQVAPYKKVRKVA 526

Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
           F   IPK  SGKILR++LI    SK+
Sbjct: 527 FVTDIPKNASGKILRKDLIKLATSKL 552

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q3E6Y4|4CLL3_ARATH 4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2

 Score =  218 bits (554), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 108/206 (52%), Positives = 142/206 (68%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GY +TE+ G       +      G+ G L +G+EA+IV  DT + +  NQ GELW++GP 
Sbjct: 347 GYALTESHGSGASTESVEESLKYGAVGLLSSGIEARIVDPDTGRVMGVNQPGELWLKGPS 406

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +  GYF NE+AT   I+ EGWL  GDL Y DE G LF+VDR+KELIK  G+QV PAELE 
Sbjct: 407 ISKGYFGNEEATNETINLEGWLKLGDLCYIDEDGFLFVVDRLKELIKYKGYQVPPAELEA 466

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +L++HP ILDA VIPFPD EAG+ P+AYV R P S+L++++V  F+  QVA YK++R V 
Sbjct: 467 LLIAHPHILDAAVIPFPDREAGQYPMAYVARKPESNLSEKEVIDFISNQVAPYKKIRKVA 526

Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
           F +SIPKT SGK LR++LI    SK+
Sbjct: 527 FISSIPKTASGKTLRKDLIKLSTSKL 552

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P23|4CLL9_ARATH 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2

 Score =  216 bits (549), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/198 (51%), Positives = 137/198 (69%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TE+ G          +   GS GR+   +EA+IV   T + LPP + GELW+RGP+
Sbjct: 353 GYGLTESSGPAASTFGPEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPV 412

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY  NE+A+   +DKEGWL TGDL YFD    L+IVDR+KELIK   +QV P ELE 
Sbjct: 413 IMKGYVGNEKASAETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQVPPVELEQ 472

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +L S+P+++DA V+PFPD +AGE+P+A++VR P S+L +  +  FV KQV  YK++R V 
Sbjct: 473 ILHSNPDVIDAAVVPFPDEDAGEIPMAFIVRKPGSNLNEAQIIDFVAKQVTPYKKVRRVA 532

Query: 181 FTNSIPKTTSGKILRREL 198
           F N+IPK  +GKILRREL
Sbjct: 533 FINAIPKNPAGKILRREL 550

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) into OPDA-CoA.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P26|4CLL8_ARATH 4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana GN=4CLL8 PE=2 SV=2

 Score =  213 bits (541), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/206 (53%), Positives = 140/206 (67%), Gaps = 3/206 (1%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GY +TE+ G       +   +  G+ G L  GVEA+IV  +T + +  NQ GELW++GP 
Sbjct: 348 GYALTESNGAGASIESVEESRRYGAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPS 407

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +  GYF NE+    II  EGWL TGDL Y D  G LFIVDR+KELIK  G+QV PAELE 
Sbjct: 408 IAKGYFRNEEE---IITSEGWLKTGDLCYIDNDGFLFIVDRLKELIKYKGYQVPPAELEA 464

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +L++HP+ILDA VIPFPD EAG+ P+AYV R P S+L ++ V  F+ KQVA YK++R V 
Sbjct: 465 LLLNHPDILDAAVIPFPDKEAGQFPMAYVARKPESNLCEKKVIDFISKQVAPYKKIRKVA 524

Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
           F +SIPKT SGK LR++LI    SKI
Sbjct: 525 FIDSIPKTPSGKTLRKDLIKFAISKI 550

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q8RU95|4CLL6_ORYSJ 4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp. japonica GN=4CLL6 PE=2 SV=2

 Score =  211 bits (537), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/199 (52%), Positives = 139/199 (69%), Gaps = 2/199 (1%)

Query: 2   YGMTETCG-VVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           YG+TE+ G V T+  P       GS GRL   V+A+IV   T + L P + GELW+RGP+
Sbjct: 391 YGLTESTGPVATMAGPEESAAY-GSVGRLAPRVQAKIVDTATGEVLGPGRRGELWIRGPV 449

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY  + +AT   I  +GWL TGDL YF+E G L++VDR+KELIK  G+QV PAELE 
Sbjct: 450 VMKGYVGDPEATAATITPDGWLKTGDLCYFNEDGYLYVVDRLKELIKYKGYQVPPAELEH 509

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +L S PEI DA V+P+PD EAG++P+A+VVR P + LT++ V   V K VA YK++R V 
Sbjct: 510 ILQSRPEIADAAVVPYPDEEAGQLPMAFVVRQPGAYLTEQQVMNCVAKHVAPYKKVRRVA 569

Query: 181 FTNSIPKTTSGKILRRELI 199
           F N+IPK+ +GKILRREL+
Sbjct: 570 FVNAIPKSPAGKILRRELV 588

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
358348013	218	4-coumarate-coa ligase [Medicago truncat	1.0	0.944	0.781	2e-92
373432591	540	4-coumarate--CoA ligase-like 7-like [Gly	1.0	0.381	0.771	3e-92
255565415	542	AMP dependent CoA ligase, putative [Rici	1.0	0.380	0.762	4e-91
380042366	543	acyl-activating enzyme 3 [Cannabis sativ	1.0	0.379	0.762	6e-90
356539342	548	PREDICTED: 4-coumarate--CoA ligase-like	1.0	0.375	0.757	8e-90
225436506	544	PREDICTED: 4-coumarate--CoA ligase-like	1.0	0.378	0.747	1e-89
224077516	543	4-coumarate-coa ligase [Populus trichoca	1.0	0.379	0.747	6e-89
224127622	543	4-coumarate-coa ligase [Populus trichoca	1.0	0.379	0.742	7e-89
297734926	221	unnamed protein product [Vitis vinifera]	1.0	0.932	0.747	1e-88
356544665	379	PREDICTED: LOW QUALITY PROTEIN: 4-coumar	1.0	0.543	0.737	8e-87

>gi|358348013|ref|XP_003638044.1| 4-coumarate-coa ligase [Medicago truncatula] gi|355503979|gb|AES85182.1| 4-coumarate-coa ligase [Medicago truncatula]

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 161/206 (78%), Positives = 185/206 (89%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYGMTETCG+V+VEN  +G++++GSAG LVAGVEAQIV VDTLKPLPP Q+GE+WVRGP 
Sbjct: 13  GYGMTETCGIVSVENTRMGIRHTGSAGMLVAGVEAQIVSVDTLKPLPPGQLGEIWVRGPN 72

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +MPGY+NN QA++L IDK+GW+HTGDLGYFDE G LF+VDRIKELIK  GFQVAPAELEG
Sbjct: 73  MMPGYYNNPQASRLTIDKKGWVHTGDLGYFDEDGNLFVVDRIKELIKYKGFQVAPAELEG 132

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +LVSHPEILDAVVIPFPD EAGEVP+AYVVRSPNSSLT+ED+QKF+  QVA +KRLR VT
Sbjct: 133 LLVSHPEILDAVVIPFPDAEAGEVPVAYVVRSPNSSLTEEDIQKFIADQVAPFKRLRRVT 192

Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
           F N++PKT SGKILRRELI K RSKI
Sbjct: 193 FINTVPKTASGKILRRELIDKARSKI 218

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|373432591|ref|NP_001243292.1| 4-coumarate--CoA ligase-like 7-like [Glycine max] gi|370316591|gb|AEX25890.1| 4-coumarate:CoA ligase [Glycine max]

 Score =  343 bits (879), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 159/206 (77%), Positives = 184/206 (89%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYGMTETCG+V+VEN  +G++NSGS G LVAG+EAQ+V VDTLKPLPP Q+GE+WVRGP 
Sbjct: 335 GYGMTETCGIVSVENARMGIRNSGSTGMLVAGMEAQVVSVDTLKPLPPGQLGEIWVRGPN 394

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY NN QAT+L +DK+GW+HTGDLGYFDE GQLF+VDRIKELIK  GFQVAPAELEG
Sbjct: 395 MMQGYHNNPQATRLTMDKKGWVHTGDLGYFDEDGQLFVVDRIKELIKYKGFQVAPAELEG 454

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +LVSH EILDAVVIP+PD EAGEVP+AYVVRSPNSSLT+EDVQKF+ KQVA +KR+R VT
Sbjct: 455 LLVSHAEILDAVVIPYPDAEAGEVPVAYVVRSPNSSLTEEDVQKFIAKQVAPFKRIRRVT 514

Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
           F N++PKT SGKILRRELI K+RSKI
Sbjct: 515 FINAVPKTASGKILRRELIEKVRSKI 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565415|ref|XP_002523698.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223537002|gb|EEF38638.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  339 bits (870), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 157/206 (76%), Positives = 185/206 (89%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYGMTET G+V+VENP +GV++SGSAG L AG+EAQI+ VDTLKPLPPNQ+GE+WVRGP 
Sbjct: 337 GYGMTETTGIVSVENPRIGVRHSGSAGTLAAGIEAQIISVDTLKPLPPNQLGEIWVRGPN 396

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GYFNN QATK  IDK+GWLHTGDLGYFDE G+L++VDRIKELIK  GFQVAPAELEG
Sbjct: 397 MMRGYFNNPQATKQTIDKKGWLHTGDLGYFDEDGKLYVVDRIKELIKYKGFQVAPAELEG 456

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +LVSHPE+LDAVVIPFPD EAGEVP+AYVVRSPNSSLT+E+VQK++  QVA +KRLR VT
Sbjct: 457 LLVSHPELLDAVVIPFPDAEAGEVPVAYVVRSPNSSLTEEEVQKYIADQVAPFKRLRRVT 516

Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
           F N++PK+ SGKILRRELI K++SK+
Sbjct: 517 FINTVPKSASGKILRRELIEKVKSKL 542

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042366|gb|AFD33347.1| acyl-activating enzyme 3 [Cannabis sativa]

 Score =  335 bits (860), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 157/206 (76%), Positives = 181/206 (87%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYGMTETCG+V++E+   G +NSGSAG L +GVEAQIV VDTLKPLPPNQ+GE+WV+GP 
Sbjct: 338 GYGMTETCGIVSMEDIRGGKRNSGSAGMLASGVEAQIVSVDTLKPLPPNQLGEIWVKGPN 397

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GYFNN QATKL IDK+GW+HTGDLGYFDE G L++VDRIKELIK  GFQVAPAELEG
Sbjct: 398 MMQGYFNNPQATKLTIDKKGWVHTGDLGYFDEDGHLYVVDRIKELIKYKGFQVAPAELEG 457

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +LVSHPEILDAVVIPFPD EAGEVP+AYVVRSPNSSLT+ DV+KF+  QVA +KRLR VT
Sbjct: 458 LLVSHPEILDAVVIPFPDAEAGEVPVAYVVRSPNSSLTENDVKKFIAGQVASFKRLRKVT 517

Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
           F NS+PK+ SGKILRRELI K+RS +
Sbjct: 518 FINSVPKSASGKILRRELIQKVRSNM 543

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539342|ref|XP_003538157.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Glycine max]

 Score =  335 bits (858), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 156/206 (75%), Positives = 184/206 (89%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYGMTETCG+V+VENP +GV+++GS G LV+GVEAQIV VDT KPLPP Q+GE+WVRGP 
Sbjct: 343 GYGMTETCGIVSVENPRVGVRHTGSTGTLVSGVEAQIVSVDTQKPLPPRQLGEIWVRGPN 402

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY NN +AT+L IDK+GW+HTGDLGYFDE GQL++VDRIKELIK  GFQVAPAELEG
Sbjct: 403 MMQGYHNNPEATRLTIDKKGWVHTGDLGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEG 462

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +LVSHPEIL+AVV+P+PD EAGEVPIAYVVRSPNSSLT+E++QKF+ KQVA +K+LR VT
Sbjct: 463 LLVSHPEILEAVVVPYPDDEAGEVPIAYVVRSPNSSLTEEEIQKFIAKQVAPFKKLRRVT 522

Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
           F N++PKT SGKILRREL AK RSKI
Sbjct: 523 FINNVPKTASGKILRRELTAKARSKI 548

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436506|ref|XP_002276353.1| PREDICTED: 4-coumarate--CoA ligase-like 7 [Vitis vinifera]

 Score =  334 bits (856), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 154/206 (74%), Positives = 183/206 (88%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYGMTETCG+V+ E P +G+Q++GS G LV+GVEAQI+ VDTLKPLPPNQ+GE+WVRGP 
Sbjct: 339 GYGMTETCGIVSKEIPKIGIQHTGSTGPLVSGVEAQIISVDTLKPLPPNQLGEIWVRGPN 398

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GYFNN QATKL IDK+GW+HTGD+GYFDE G+LF+VDRIKELIK  GFQVAPAELE 
Sbjct: 399 MMKGYFNNPQATKLTIDKKGWVHTGDVGYFDEQGKLFVVDRIKELIKYKGFQVAPAELEA 458

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +LVSHPEILDAVVIPFPD EAGEVPIAYVVRSPNSSLT+EDV+ F+  QVA +K+LR V+
Sbjct: 459 LLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVKTFIANQVAPFKKLRRVS 518

Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
           F N++PK+ SGKILRRELI K+R+K+
Sbjct: 519 FINTVPKSASGKILRRELIEKVRAKL 544

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077516|ref|XP_002305282.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222848246|gb|EEE85793.1| 4-coumarate-coa ligase [Populus trichocarpa]

 Score =  332 bits (851), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 154/206 (74%), Positives = 184/206 (89%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYGMTETCG+V+VE+  LGV++SGSAG L AG+EAQIV V+TLKPLPPNQ+GE+WVRGP 
Sbjct: 338 GYGMTETCGIVSVEDSRLGVRHSGSAGILAAGIEAQIVSVETLKPLPPNQLGEIWVRGPN 397

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GYFNN QATK  +DK+GW+HTGD+GYFD+ GQLF+VDRIKELIK  GFQVAPAELEG
Sbjct: 398 MMRGYFNNPQATKDTMDKKGWVHTGDVGYFDDDGQLFVVDRIKELIKYKGFQVAPAELEG 457

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +LVSHP+ILDAVVIP+PD EAGEVP+AYVVRSPNS+LT+ DVQKF+  QVA +KRLR VT
Sbjct: 458 LLVSHPQILDAVVIPYPDAEAGEVPVAYVVRSPNSALTEVDVQKFIADQVAPFKRLRKVT 517

Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
           F N++PK+ SGKILRRELI +++SKI
Sbjct: 518 FINTVPKSASGKILRRELIQQVKSKI 543

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127622|ref|XP_002329323.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|224127626|ref|XP_002329324.1| acyl:coa ligase [Populus trichocarpa] gi|222870777|gb|EEF07908.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222870778|gb|EEF07909.1| acyl:coa ligase [Populus trichocarpa]

 Score =  332 bits (850), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 153/206 (74%), Positives = 184/206 (89%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           G+GMTETCG+V++E+P +GV++SGSAG L AG+EAQI+ V+T KPLPPNQ+GE+WVRGP 
Sbjct: 338 GFGMTETCGIVSLEDPRIGVRHSGSAGILNAGIEAQIISVETAKPLPPNQLGEIWVRGPN 397

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GYFNN QATK  IDK+GW+HTGDLGYFD+ GQLF+VDRIKELIK  GFQVAPAELEG
Sbjct: 398 MMRGYFNNPQATKDTIDKKGWVHTGDLGYFDDDGQLFVVDRIKELIKYKGFQVAPAELEG 457

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +LVSHPEILDAVV P+PD EAGEVP+AYVVRSPNS+LT+EDVQKF+  QVA +KRLR VT
Sbjct: 458 LLVSHPEILDAVVTPYPDAEAGEVPVAYVVRSPNSALTEEDVQKFISDQVAPFKRLRKVT 517

Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
           F NS+PK+ SGKILRREL+ K++SK+
Sbjct: 518 FINSVPKSASGKILRRELVQKVKSKM 543

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734926|emb|CBI17160.3| unnamed protein product [Vitis vinifera]

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 154/206 (74%), Positives = 183/206 (88%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYGMTETCG+V+ E P +G+Q++GS G LV+GVEAQI+ VDTLKPLPPNQ+GE+WVRGP 
Sbjct: 16  GYGMTETCGIVSKEIPKIGIQHTGSTGPLVSGVEAQIISVDTLKPLPPNQLGEIWVRGPN 75

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GYFNN QATKL IDK+GW+HTGD+GYFDE G+LF+VDRIKELIK  GFQVAPAELE 
Sbjct: 76  MMKGYFNNPQATKLTIDKKGWVHTGDVGYFDEQGKLFVVDRIKELIKYKGFQVAPAELEA 135

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +LVSHPEILDAVVIPFPD EAGEVPIAYVVRSPNSSLT+EDV+ F+  QVA +K+LR V+
Sbjct: 136 LLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVKTFIANQVAPFKKLRRVS 195

Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
           F N++PK+ SGKILRRELI K+R+K+
Sbjct: 196 FINTVPKSASGKILRRELIEKVRAKL 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544665|ref|XP_003540768.1| PREDICTED: LOW QUALITY PROTEIN: 4-coumarate--CoA ligase-like 7-like [Glycine max]

 Score =  325 bits (833), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 152/206 (73%), Positives = 181/206 (87%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYGMTETCG+V++ENP +GV+++GS G L +GVEAQIV VDT KPLPP Q+GE+WVRGP 
Sbjct: 174 GYGMTETCGIVSLENPRVGVRHTGSTGTLGSGVEAQIVSVDTQKPLPPRQLGEIWVRGPN 233

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY N   AT+L ID++GW+HTGDLGYFDE GQL++VDRIKELIK  GFQVAPAELEG
Sbjct: 234 MMQGYHNYPXATRLTIDEKGWVHTGDLGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEG 293

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +LVSHPEIL+AVV+P+PD EAGEVPIAYVVRSPNSSLT+E++QKF+ KQVA +K+L+ VT
Sbjct: 294 LLVSHPEILEAVVVPYPDDEAGEVPIAYVVRSPNSSLTEEEIQKFIAKQVAPFKKLQRVT 353

Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
           F NS+PKT SGKILRREL AK RSKI
Sbjct: 354 FINSVPKTASGKILRRELTAKARSKI 379

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2115673	544	AT4G05160 [Arabidopsis thalian	1.0	0.378	0.718	1.4e-78
TAIR|locus:2034392	546	OPCL1 "OPC-8:0 CoA ligase1" [A	1.0	0.377	0.548	2.5e-56
TAIR|locus:2034423	565	AT1G20480 [Arabidopsis thalian	1.0	0.364	0.533	2.1e-54
TAIR|locus:2034403	550	AT1G20500 [Arabidopsis thalian	1.0	0.374	0.538	8.9e-54
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.956	0.350	0.522	4.4e-52
TAIR|locus:2176662	550	4CL8 [Arabidopsis thaliana (ta	0.980	0.367	0.536	6.5e-51
TAIR|locus:2017602	561	4CL1 "4-coumarate:CoA ligase 1	0.980	0.360	0.521	1.5e-49
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.980	0.363	0.502	2.5e-49
TAIR|locus:2015003	561	4CL3 "4-coumarate:CoA ligase 3	0.970	0.356	0.512	4.1e-49
TAIR|locus:2117209	566	AT4G19010 [Arabidopsis thalian	0.961	0.349	0.510	4.1e-49

TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 148/206 (71%), Positives = 177/206 (85%)

Query:     1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
             GYGMTETCG+V+VE+P LG +NSGSAG L  GVEAQIV V+T K  PPNQ GE+WVRGP 
Sbjct:   339 GYGMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPN 398

Query:    61 LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
             +M GY NN QATK  IDK+ W+HTGDLGYF+E G L++VDRIKELIK  GFQVAPAELEG
Sbjct:   399 MMKGYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQVAPAELEG 458

Query:   121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
             +LVSHP+ILDAVVIPFPD EAGEVPIA+VVRSPNSS+T++D+QKF+ KQVA YKRLR V+
Sbjct:   459 LLVSHPDILDAVVIPFPDEEAGEVPIAFVVRSPNSSITEQDIQKFIAKQVAPYKRLRRVS 518

Query:   181 FTNSIPKTTSGKILRRELIAKLRSKI 206
             F + +PK+ +GKILRREL+ ++RSK+
Sbjct:   519 FISLVPKSAAGKILRRELVQQVRSKM 544

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 114/208 (54%), Positives = 150/208 (72%)

Query:     1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
             GYG+TE+ G+    + +   +  G+AG+L A +E +IV   T + L P Q GELW++GP 
Sbjct:   339 GYGLTESTGIGASTDTVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPS 398

Query:    61 LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
             +M GYF+NE+AT   +D EGWL TGDL Y DE G +F+VDR+KELIK  G+QVAPAELE 
Sbjct:   399 IMKGYFSNEEATSSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVAPAELEA 458

Query:   121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
             +L++HPEI DA VIPFPD E G+ P+AYVVR   SSL+++ + +FV KQVA YKR+R V 
Sbjct:   459 LLLTHPEITDAAVIPFPDKEVGQFPMAYVVRKTGSSLSEKTIMEFVAKQVAPYKRIRKVA 518

Query:   181 FTNSIPKTTSGKILRRELI--AKLRSKI 206
             F +SIPK  SGKILR++LI  A   SK+
Sbjct:   519 FVSSIPKNPSGKILRKDLIKIATSNSKL 546

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 110/206 (53%), Positives = 142/206 (68%)

Query:     1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
             GYG+TE+  +          +  G++G L   VE +IV  DT + L  NQ GELW+R P 
Sbjct:   360 GYGLTESTAIAASMFNKEETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRSPT 419

Query:    61 LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
             +M GYF N++AT   ID EGWL TGDL Y D  G +F+VDR+KELIKCNG+QVAPAELE 
Sbjct:   420 VMKGYFKNKEATASTIDSEGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQVAPAELEA 479

Query:   121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
             +L++HPEI DA VIP PD +AG+ P+AY+VR   S+L++ ++  FV KQV+ YK++R VT
Sbjct:   480 LLLAHPEIADAAVIPIPDMKAGQYPMAYIVRKVGSNLSESEIMGFVAKQVSPYKKIRKVT 539

Query:   181 FTNSIPKTTSGKILRRELIAKLRSKI 206
             F  SIPK  SGKILRREL     SK+
Sbjct:   540 FLASIPKNPSGKILRRELTKLTTSKL 565

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 111/206 (53%), Positives = 146/206 (70%)

Query:     1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
             GY +TE+ G     N     +  G+AG L + VEA+IV  +T + +  NQ GELW++GP 
Sbjct:   345 GYALTESNGGGAFTNSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPS 404

Query:    61 LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
             +  GYF N++AT   I+ EGWL TGDL Y DE G LF+VDR+KELIK  G+QV PAELE 
Sbjct:   405 ISKGYFKNQEATNETINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQVPPAELEA 464

Query:   121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
             +L++HP+ILDA VIPFPD EAG+ P+AYVVR   S+L+++ V  F+ KQVA YK++R V+
Sbjct:   465 LLITHPDILDAAVIPFPDKEAGQYPMAYVVRKHESNLSEKQVIDFISKQVAPYKKIRKVS 524

Query:   181 FTNSIPKTTSGKILRRELIAKLRSKI 206
             F NSIPKT SGK LR++LI    SK+
Sbjct:   525 FINSIPKTASGKTLRKDLIKLATSKL 550

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 104/199 (52%), Positives = 140/199 (70%)

Query:     1 GYGMTETCG-VVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP 59
             GYG+TE+ G   +   P   V+  GS GR+   +EA+IV   T + LPP + GELW+RGP
Sbjct:   353 GYGLTESSGPAASTFGPEEMVKY-GSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGP 411

Query:    60 ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
             ++M GY  NE+A+   +DKEGWL TGDL YFD    L+IVDR+KELIK   +QV P ELE
Sbjct:   412 VIMKGYVGNEKASAETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQVPPVELE 471

Query:   120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNV 179
              +L S+P+++DA V+PFPD +AGE+P+A++VR P S+L +  +  FV KQV  YK++R V
Sbjct:   472 QILHSNPDVIDAAVVPFPDEDAGEIPMAFIVRKPGSNLNEAQIIDFVAKQVTPYKKVRRV 531

Query:   180 TFTNSIPKTTSGKILRREL 198
              F N+IPK  +GKILRREL
Sbjct:   532 AFINAIPKNPAGKILRREL 550

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2176662 4CL8 [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 111/207 (53%), Positives = 144/207 (69%)

Query:     1 GYGMTETCGV-VTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP 59
             GY +TE+ G   ++E+ +   +  G+ G L  GVEA+IV  +T + +  NQ GELW++GP
Sbjct:   348 GYALTESNGAGASIES-VEESRRYGAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGP 406

Query:    60 ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
              +  GYF NE+    II  EGWL TGDL Y D  G LFIVDR+KELIK  G+QV PAELE
Sbjct:   407 SIAKGYFRNEEE---IITSEGWLKTGDLCYIDNDGFLFIVDRLKELIKYKGYQVPPAELE 463

Query:   120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNV 179
              +L++HP+ILDA VIPFPD EAG+ P+AYV R P S+L ++ V  F+ KQVA YK++R V
Sbjct:   464 ALLLNHPDILDAAVIPFPDKEAGQFPMAYVARKPESNLCEKKVIDFISKQVAPYKKIRKV 523

Query:   180 TFTNSIPKTTSGKILRRELIAKLRSKI 206
              F +SIPKT SGK LR++LI    SKI
Sbjct:   524 AFIDSIPKTPSGKTLRKDLIKFAISKI 550

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 107/205 (52%), Positives = 137/205 (66%)

Query:     1 GYGMTETCGVVTVENPLLGVQ---NSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR 57
             GYGMTE   V+ +            SG+ G +V   E +IV  DT   L  NQ GE+ +R
Sbjct:   353 GYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIR 412

Query:    58 GPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAE 117
             G  +M GY NN  AT   IDK+GWLHTGD+G  D+  +LFIVDR+KELIK  GFQVAPAE
Sbjct:   413 GHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAE 472

Query:   118 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR 177
             LE +L+ HP+I D  V+   +  AGEVP+A+VV+S +S L+++DV++FV KQV  YKR+ 
Sbjct:   473 LEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRIN 532

Query:   178 NVTFTNSIPKTTSGKILRRELIAKL 202
              V FT SIPK  SGKILR++L AKL
Sbjct:   533 KVFFTESIPKAPSGKILRKDLRAKL 557

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA;TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 103/205 (50%), Positives = 142/205 (69%)

Query:     1 GYGMTETCGVVTVENPLLGVQ---NSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR 57
             GYGMTE   V+ +            SG+ G +V   E +I+  DT   LP N+ GE+ +R
Sbjct:   346 GYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIR 405

Query:    58 GPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAE 117
             G  +M GY N+  AT   IDK+GWLHTGD+G+ D+  +LFIVDR+KELIK  GFQVAPAE
Sbjct:   406 GNQIMKGYLNDPLATASTIDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQVAPAE 465

Query:   118 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR 177
             LE +L+ HPEI D  V+   + +AGEVP+A+VVRS +S+++++++++FV KQV  YKR+ 
Sbjct:   466 LESLLIGHPEINDVAVVAMKEEDAGEVPVAFVVRSKDSNISEDEIKQFVSKQVVFYKRIN 525

Query:   178 NVTFTNSIPKTTSGKILRRELIAKL 202
              V FT+SIPK  SGKILR++L A+L
Sbjct:   526 KVFFTDSIPKAPSGKILRKDLRARL 550

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 106/207 (51%), Positives = 142/207 (68%)

Query:     1 GYGMTETCGVVTV-----ENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELW 55
             GYGMTE   V+++     + P+     SGS G +V   E ++V ++T   L  NQ GE+ 
Sbjct:   356 GYGMTEAGPVLSMSLGFAKEPI--PTKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEIC 413

Query:    56 VRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAP 115
             +RG  +M  Y N+ +AT   ID+EGWLHTGD+GY DE  ++FIVDR+KE+IK  GFQV P
Sbjct:   414 IRGQQIMKEYLNDPEATSATIDEEGWLHTGDIGYVDEDDEIFIVDRLKEVIKFKGFQVPP 473

Query:   116 AELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKR 175
             AELE +L++H  I DA V+P  D  AGEVP+A+VVRS  + +T+EDV+++V KQV  YKR
Sbjct:   474 AELESLLINHHSIADAAVVPQNDEVAGEVPVAFVVRSNGNDITEEDVKEYVAKQVVFYKR 533

Query:   176 LRNVTFTNSIPKTTSGKILRRELIAKL 202
             L  V F  SIPK+ SGKILR++L AKL
Sbjct:   534 LHKVFFVASIPKSPSGKILRKDLKAKL 560

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2117209 AT4G19010 [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 101/198 (51%), Positives = 136/198 (68%)

Query:     1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
             GYGMTE+  V T       +    S G L   ++A++V   +   LPP   GELW++GP 
Sbjct:   357 GYGMTESTAVGTRGFNSEKLSRYSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPG 416

Query:    61 LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
             +M GY NN +AT++ I ++ WL TGD+ YFDE G LFIVDRIKE+IK  GFQ+APA+LE 
Sbjct:   417 VMKGYLNNPKATQMSIVEDSWLRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQIAPADLEA 476

Query:   121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
             VLVSHP I+DA V   P+ E GE+P+A+VVR   ++L++EDV  +V  QVA Y+++R V 
Sbjct:   477 VLVSHPLIIDAAVTAAPNEECGEIPVAFVVRRQETTLSEEDVISYVASQVAPYRKVRKVV 536

Query:   181 FTNSIPKTTSGKILRREL 198
               NSIPK+ +GKILR+EL
Sbjct:   537 MVNSIPKSPTGKILRKEL 554

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0DV32	4CLL1_ORYSJ	6, ., 2, ., 1, ., -	0.7135	0.9902	0.3695	yes	no
Q9M0X9	4CLL7_ARATH	6, ., 2, ., 1, ., -	0.7184	1.0	0.3786	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00022179001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (544 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036840001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (514 aa)						•			0.899
	GSVIVG00033763001	SubName- Full=Chromosome undetermined scaffold_69, whole genome shotgun sequence; (338 aa)						•			0.899
	GSVIVG00025189001	SubName- Full=Chromosome chr9 scaffold_33, whole genome shotgun sequence; (429 aa)						•			0.899
	GSVIVG00024561001	SubName- Full=Putative uncharacterized protein (Chromosome chr6 scaffold_3, whole genome shotgu [...] (717 aa)						•			0.899
	GSVIVG00023932001	SubName- Full=Putative uncharacterized protein (Chromosome chr6 scaffold_3, whole genome shotgu [...] (505 aa)						•			0.899
	GSVIVG00023306001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (508 aa)						•			0.899
	GSVIVG00023211001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (710 aa)						•			0.899
	GSVIVG00019520001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (247 aa)						•			0.899
	GSVIVG00018175001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (723 aa)						•			0.899
	GSVIVG00017017001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (532 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-120
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-93
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	4e-86
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-79
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	3e-79
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	3e-77
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	4e-77
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	2e-74
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	1e-68
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-68
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	6e-66
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-64
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	3e-64
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	9e-64
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	4e-61
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	5e-58
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-52
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-52
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	6e-52
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	3e-51
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	1e-50
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	1e-49
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	3e-49
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	3e-49
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-48
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	6e-48
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	8e-48
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	9e-47
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-46
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	3e-46
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	7e-45
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-44
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	1e-43
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	1e-43
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-43
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	2e-43
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	2e-42
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	2e-42
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	4e-42
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	1e-41
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	3e-41
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	4e-41
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	5e-41
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	6e-41
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	1e-40
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	2e-40
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	6e-40
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	2e-39
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	2e-39
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	3e-39
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	1e-37
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	1e-37
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	2e-37
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	3e-37
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	1e-36
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	2e-36
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-36
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	1e-35
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	1e-35
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	2e-35
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	2e-35
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	3e-35
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	6e-35
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	1e-34
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-34
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	5e-34
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	2e-33
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	1e-32
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	9e-32
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	3e-31
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	4e-31
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	7e-31
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	7e-30
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	1e-29
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	1e-29
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	2e-29
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	2e-29
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	3e-29
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-28
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	4e-28
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	4e-28
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	4e-28
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	6e-28
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	1e-27
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	2e-27
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	3e-27
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	5e-27
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	9e-27
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	3e-26
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	5e-26
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	9e-26
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	3e-25
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	5e-25
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	7e-25
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	9e-25
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	1e-24
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	2e-24
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	2e-24
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	3e-24
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	4e-24
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	8e-24
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-23
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	2e-23
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	4e-23
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	7e-23
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	7e-23
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-22
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	3e-22
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	4e-22
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	1e-21
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	1e-21
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	1e-21
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	1e-21
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	4e-21
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	5e-21
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	2e-20
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	3e-20
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	4e-20
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-19
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	4e-19
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	8e-19
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	1e-18
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	2e-18
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	2e-18
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	2e-18
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	6e-18
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-17
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	4e-17
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	6e-17
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	7e-17
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	7e-17
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	1e-16
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	6e-16
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	7e-16
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	8e-16
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	9e-16
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	2e-15
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	3e-15
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-14
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	9e-14
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	9e-14
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	1e-13
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	2e-13
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	4e-13
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	1e-12
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-12
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	3e-12
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-12
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	4e-12
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-11
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	2e-11
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	4e-11
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	4e-11
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-10
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-10
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	5e-10
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	5e-10
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-09
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	3e-09
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	3e-09
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	8e-09
pfam13193	43	pfam13193, DUF4009, Domain of unknown function (DU	5e-08
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	7e-08
cd05905	556	cd05905, Dip2, Disco-interacting protein 2 (Dip2)	2e-07
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	2e-06
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	1e-05
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	4e-05
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	8e-05
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	9e-05
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	6e-04
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	9e-04
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	0.003

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  348 bits (896), Expect = e-120
 Identities = 127/198 (64%), Positives = 152/198 (76%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYGMTE+  V T+          GS GRLV  VEA+IV  +T + LPPNQ GELWVRGP 
Sbjct: 307 GYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVEAKIVDPETGESLPPNQPGELWVRGPQ 366

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY NN +AT   IDK+GWLHTGDLGYFDE G LFIVDR+KELIK  GFQVAPAELE 
Sbjct: 367 VMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELIKYKGFQVAPAELEA 426

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           +L+SHPEI DA VIP+PD EAGE+P+A+VVR P S L++++V +FV KQVA YK++R V 
Sbjct: 427 LLLSHPEIADAAVIPYPDEEAGEIPMAFVVRQPGSELSEDEVMQFVAKQVAPYKKVRKVV 486

Query: 181 FTNSIPKTTSGKILRREL 198
           F ++IPK+ SGKILRREL
Sbjct: 487 FVDAIPKSPSGKILRREL 504

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  280 bits (719), Expect = 2e-93
 Identities = 113/195 (57%), Positives = 139/195 (71%), Gaps = 3/195 (1%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYGMTET    T+  P  G +  GS GRLV  VEA+IV  D  K L PN+ GEL V+GP 
Sbjct: 295 GYGMTETGPATTLTPP--GDEKPGSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQ 352

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY NN +ATK  ID++GWLHTGD+GYFDE G  +IVDR KELIK  G+QV PAELE 
Sbjct: 353 IMKGYLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPPAELEA 412

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR-NV 179
           VL+ HP++ DA VI  PD  AGE+P AYVV  P S LT+++V+ +V K+VA+YK+LR  V
Sbjct: 413 VLLEHPKVADAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEVKDYVAKKVAKYKQLRGGV 472

Query: 180 TFTNSIPKTTSGKIL 194
            F + IPK+ SGKIL
Sbjct: 473 VFVDEIPKSPSGKIL 487

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  263 bits (674), Expect = 4e-86
 Identities = 112/207 (54%), Positives = 144/207 (69%), Gaps = 7/207 (3%)

Query: 1   GYGMTETCGVVTV-----ENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELW 55
           GYGMTE   V+ +     + P      SGS G +V   E +IV  +T   LP NQ GE+ 
Sbjct: 330 GYGMTEAGPVLAMCLAFAKEPF--PVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEIC 387

Query: 56  VRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAP 115
           +RGP +M GY N+ +AT   IDK+GWLHTGD+GY D+  +LFIVDR+KELIK  GFQVAP
Sbjct: 388 IRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAP 447

Query: 116 AELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKR 175
           AELE +L+SHP I DA V+P  D  AGEVP+A+VVRS  S +T++++++FV KQV  YKR
Sbjct: 448 AELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKR 507

Query: 176 LRNVTFTNSIPKTTSGKILRRELIAKL 202
           +  V F +SIPK  SGKILR++L AKL
Sbjct: 508 IHKVFFVDSIPKAPSGKILRKDLRAKL 534

Length = 537

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  244 bits (625), Expect = 2e-79
 Identities = 96/198 (48%), Positives = 127/198 (64%), Gaps = 3/198 (1%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET  V TV NPL G +  GS G  + G E +IV  +    LPP +VGEL VRGP 
Sbjct: 273 GYGLTETSPVTTV-NPLDGERKPGSIGLPLPGTEVKIVDDEG-NELPPGEVGELVVRGPQ 330

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY+N  + T  ++  +GWL TGD+GY DE G  +IVDR K++I   GF V P E+E 
Sbjct: 331 VMKGYWNRPEETAEVLT-DGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEE 389

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           VL SHP +L+A V+  PDP  GE   A+VV    +SLT+E++  F  +++A YK  R V 
Sbjct: 390 VLYSHPAVLEAAVVGVPDPYRGEAVKAFVVLKEGASLTEEELIAFCRERLAAYKVPRQVE 449

Query: 181 FTNSIPKTTSGKILRREL 198
           F + +PK+  GKILRREL
Sbjct: 450 FRDELPKSAVGKILRREL 467

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  246 bits (629), Expect = 3e-79
 Identities = 107/198 (54%), Positives = 138/198 (69%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYGMTE+  V T       +    S G L   ++A++V   T   LPP   GELW++GP 
Sbjct: 351 GYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPG 410

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY NN +AT+  IDK+GWL TGD+ YFDE G L+IVDR+KE+IK  GFQ+APA+LE 
Sbjct: 411 VMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEA 470

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           VL+SHPEI+DA V   PD E GE+P+A+VVR   S+L++E V  +V KQVA YK++R V 
Sbjct: 471 VLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVV 530

Query: 181 FTNSIPKTTSGKILRREL 198
           F  SIPK+ +GKILRREL
Sbjct: 531 FVQSIPKSPAGKILRREL 548

Length = 560

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  234 bits (600), Expect = 3e-77
 Identities = 91/199 (45%), Positives = 128/199 (64%), Gaps = 2/199 (1%)

Query: 1   GYGMTETCGVVTVENPLLGVQN-SGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP 59
           GYGMTET GV T  +     ++  G+ GR + GVE +IV  D    +PP +VGE+ VRG 
Sbjct: 149 GYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEVKIVDPDG-GEVPPGEVGEICVRGY 207

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
            +M GY+N+ +AT   ID +GWLHTGDLGY DE G L IV RIK++I   G  + PAE+E
Sbjct: 208 SVMKGYYNDPEATAEAIDADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIE 267

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNV 179
             L++HP + +A V+  PD   GEV  A+VV  P ++LT+E++  F   ++AR+K  R V
Sbjct: 268 EALLTHPAVAEAAVVGVPDERLGEVVAAFVVLKPGATLTEEELIAFCRGRLARFKVPRYV 327

Query: 180 TFTNSIPKTTSGKILRREL 198
            F + +P+T SGKI + +L
Sbjct: 328 RFVDELPRTASGKIQKFKL 346

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  240 bits (614), Expect = 4e-77
 Identities = 95/205 (46%), Positives = 129/205 (62%), Gaps = 3/205 (1%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET  VVT+  P   +   GS GR + GVE +IV  D  + LP  +VGE+WVRGP 
Sbjct: 323 GYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPN 381

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY+N  +AT    D++GWL TGDLGY DE G L+IV R+K+LI   G  + P E+E 
Sbjct: 382 VMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEA 441

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP--NSSLTKEDVQKFVVKQVARYKRLRN 178
           VL  HP + +A V+  PD   GE  +A VV  P  ++ LT E+++ F+ K++A YK  R 
Sbjct: 442 VLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRI 501

Query: 179 VTFTNSIPKTTSGKILRRELIAKLR 203
           V F + +P+T SGKI RR L  + R
Sbjct: 502 VVFVDELPRTASGKIDRRALREEYR 526

Length = 534

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  227 bits (582), Expect = 2e-74
 Identities = 94/198 (47%), Positives = 130/198 (65%), Gaps = 2/198 (1%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYGMTET    T+ +P   ++  GS GR V GVE +IV  D  + LPP +VGE+ VRGP 
Sbjct: 146 GYGMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDEDG-RELPPGEVGEIVVRGPA 204

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY+N  +AT   + ++GWLHTGDLGY DE G L+IVDR K++I   G  + PAE+E 
Sbjct: 205 VMAGYWNRPEATAEAL-RDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVEN 263

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           VL++HP + D  VI  PD E GE  +A VV  P ++L  E++  F  +++A YK  ++V 
Sbjct: 264 VLLAHPAVADVAVIGVPDEEWGEAVVAVVVLRPGATLDAEELIAFCRERLAGYKVPKSVE 323

Query: 181 FTNSIPKTTSGKILRREL 198
           F + +P+  SGKIL+REL
Sbjct: 324 FVDELPRNASGKILKREL 341

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  217 bits (556), Expect = 1e-68
 Identities = 91/209 (43%), Positives = 129/209 (61%), Gaps = 10/209 (4%)

Query: 1   GYGMTETCGVVTVENPLLGVQNS----GSAGRLVAGVEAQIVCVDTLKPLPPN--QVGEL 54
           GYGMTET  VV+V  P   +        SAGR + GVEA+IV  D    LPP+  +VGE+
Sbjct: 312 GYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIV-DDDGDELPPDGGEVGEI 370

Query: 55  WVRGPILMPGYFNNEQAT-KLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQV 113
            VRGP LM GY+N  +AT + I    GWLHTGD+GY DE G L+I DRIK++I   G  +
Sbjct: 371 IVRGPWLMQGYWNRPEATAETIDG--GWLHTGDVGYIDEDGYLYITDRIKDVIISGGENI 428

Query: 114 APAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARY 173
            P ELE  L  HP + +  VI  PD + GE P+A VV  P ++L  ++++ F+  ++A++
Sbjct: 429 YPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLRGRLAKF 488

Query: 174 KRLRNVTFTNSIPKTTSGKILRRELIAKL 202
           K  + + F + +P+T+ GKIL+R L  + 
Sbjct: 489 KLPKRIAFVDELPRTSVGKILKRVLREQY 517

Length = 521

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  217 bits (554), Expect = 2e-68
 Identities = 91/204 (44%), Positives = 127/204 (62%), Gaps = 6/204 (2%)

Query: 1   GYGMTETCGVVTVENPLLG--VQNSGSAGRLVAGVEAQIVCVDTL-KPLPPNQVGELWVR 57
           GYG++E  GV T  N L       +G+ G  +AGVE     V+ L + +P  +VGEL VR
Sbjct: 313 GYGLSEASGVTTF-NRLDDDRKTVAGTIGTAIAGVE--NKIVNELGEEVPVGEVGELLVR 369

Query: 58  GPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAE 117
           GP +M GY+++ +AT   ID +GWLHTGDLG  DE G L+IVDR K++    GF V PAE
Sbjct: 370 GPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAE 429

Query: 118 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR 177
           +E VL  HP + +A VI  PD   GEV  AYVV  P + LT+E++  +  + +A+YK  R
Sbjct: 430 VEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAYCREHLAKYKVPR 489

Query: 178 NVTFTNSIPKTTSGKILRRELIAK 201
           ++ F + +PK  +GK+L+R L  K
Sbjct: 490 SIEFLDELPKNATGKVLKRALREK 513

Length = 513

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  211 bits (538), Expect = 6e-66
 Identities = 103/207 (49%), Positives = 140/207 (67%), Gaps = 3/207 (1%)

Query: 2   YGMTE-TCGVVTVENPLLG--VQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG 58
           YG+TE +C  +T  +P  G  +    S G ++  +E + +  DT + LP N  GEL VR 
Sbjct: 336 YGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRS 395

Query: 59  PILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAEL 118
             +M GY+NN++ T   ID++GWLHTGD+GY D+ G +FIVDRIKELIK  GFQVAPAEL
Sbjct: 396 QCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAEL 455

Query: 119 EGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRN 178
           E +L++HP + DA V+P PD EAGE+P A VV +P +  ++ED+  FV   VA YK++R 
Sbjct: 456 EAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESEEDILNFVAANVAHYKKVRV 515

Query: 179 VTFTNSIPKTTSGKILRRELIAKLRSK 205
           V F +SIPK+ SGKI+RR L  K+ S 
Sbjct: 516 VQFVDSIPKSLSGKIMRRLLKEKMLSI 542

Length = 546

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  205 bits (523), Expect = 1e-64
 Identities = 81/203 (39%), Positives = 122/203 (60%), Gaps = 7/203 (3%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET       NP    +     G  V G +A+++  +T + LPP + GE+ VRGP 
Sbjct: 230 GYGLTETHTCTHF-NPPDRPK-PQCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQ 287

Query: 61  LMPGYFNNEQATK---LIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAE 117
           +  GY+N  +AT    + +D + +  TGDLGY DE G  F +DR+K +I  +G++V PAE
Sbjct: 288 VFKGYWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAE 347

Query: 118 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN--SSLTKEDVQKFVVKQVARYKR 175
           +E +L  HP +L+  VI  PDP  GEV  A+VV  P+    +T+ED+ ++  +++A YK 
Sbjct: 348 VEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPDYRGKVTEEDIIEWCRERMAAYKY 407

Query: 176 LRNVTFTNSIPKTTSGKILRREL 198
            R + F + +PKT SGK+L R L
Sbjct: 408 PRIIEFVDELPKTASGKVLWRLL 430

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  201 bits (514), Expect = 3e-64
 Identities = 87/201 (43%), Positives = 121/201 (60%), Gaps = 5/201 (2%)

Query: 1   GYGMTETCGVVTVENPL-LGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP 59
            YGMTE    +   NPL   V+  GS GR  AGVE  I+  D  +PLPP Q GE+ +RGP
Sbjct: 149 AYGMTEAAHQIAS-NPLPPLVRKPGSVGR-PAGVEVAILDDD-GRPLPPGQEGEIVIRGP 205

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
            +  GY NN +A +    ++GW  TGDLGY DE G LF+  RIKELI   G +++P E+E
Sbjct: 206 NVTAGYLNNPEANR-EAFRDGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVE 264

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNV 179
            VL+ HP + +AVV   PD   GE   A VV   +S +T E+++ F  K++A +K  + +
Sbjct: 265 EVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVTIEELRDFARKRLAAFKVPKKI 324

Query: 180 TFTNSIPKTTSGKILRRELIA 200
            F +++PK  +GKI RR+L  
Sbjct: 325 LFVDALPKGATGKIQRRKLAE 345

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  200 bits (510), Expect = 9e-64
 Identities = 87/194 (44%), Positives = 121/194 (62%), Gaps = 2/194 (1%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET  V +  NP   ++  G+ GR V GVE ++V  +  KPLPP +VGEL VRGP 
Sbjct: 147 GYGLTETSVVTS-TNPDSELKKPGTVGRPVPGVEVRVVDEEG-KPLPPGEVGELVVRGPW 204

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY+NN   T     ++GW  TGDLGY DE G L+I  R K+LIK  G  V PAE+E 
Sbjct: 205 VMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVES 264

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           VL+ HP + +A V+  PD + GE  +A+VV  P +    E+++  + +++A YK  R + 
Sbjct: 265 VLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALAEELKAHLRERLAPYKVPRVIE 324

Query: 181 FTNSIPKTTSGKIL 194
           F + +PKT SGKI 
Sbjct: 325 FVDELPKTASGKID 338

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  195 bits (498), Expect = 4e-61
 Identities = 74/200 (37%), Positives = 108/200 (54%), Gaps = 11/200 (5%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
            YGMTET   V    P   +   GS G+ + G E +IV           Q GE+ VRGP 
Sbjct: 219 TYGMTETASQVATLKPDDFLAKLGSVGKPLPGRELRIV---------NPQDGEILVRGPS 269

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           L  GY      T  + D++GW HTGDLGY D  G L+++ R  +LI   G  + P E+E 
Sbjct: 270 LFLGYLPQGGLTPPL-DEDGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEA 328

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           VL+ HP + +A V+  PD E G+ P+A+VV + +  ++ E++Q F+  ++A+YKR +   
Sbjct: 329 VLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPN-DDPVSVEELQAFLADKLAKYKRPKRWY 387

Query: 181 FTNSIPKTTSGKILRRELIA 200
               +P+  SGKI R  L  
Sbjct: 388 PLPELPRNASGKIDRAALRQ 407

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  189 bits (482), Expect = 5e-58
 Identities = 77/202 (38%), Positives = 121/202 (59%), Gaps = 5/202 (2%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           YGMTET   +   +P   +   GSAG+ +   E +I        +PP + GE+ V+GP +
Sbjct: 285 YGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIE--KDGVVVPPFEEGEIVVKGPNV 342

Query: 62  MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGV 121
             GY N E AT+    ++GW  TGD+GY DE G L+++DR  +LI   G  + PAE+E V
Sbjct: 343 TKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEV 401

Query: 122 LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTF 181
           L+SHP + +A V+  PD + G+VP+A+VV+S    +T+E+++ F  +++A+YK  +   F
Sbjct: 402 LLSHPGVAEAGVVGVPDDKWGQVPVAFVVKS--GEVTEEELRHFCEEKLAKYKVPKRFYF 459

Query: 182 TNSIPKTTSGKILRRELIAKLR 203
              +P+  SGK+LR EL   + 
Sbjct: 460 VEELPRNASGKLLRHELKQLVE 481

Length = 483

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  175 bits (446), Expect = 2e-52
 Identities = 72/209 (34%), Positives = 114/209 (54%), Gaps = 13/209 (6%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSG---------SAGRLVAGVEAQIVCVDTLKPLPPN-- 49
            +GMTET  + TV      + +             GR V GVE +IV  +    LP +  
Sbjct: 309 AWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVDDEG-NELPWDGK 367

Query: 50  QVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCN 109
            VGEL VRGP +   Y+ + + T+ +  ++GW  TGD+   DE G + I DR K++IK  
Sbjct: 368 TVGELVVRGPWVTGSYYKDPEKTEEL-TRDGWFRTGDVAVIDEDGYIQITDRAKDVIKSG 426

Query: 110 GFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQ 169
           G  ++  ELE  L++HP + +A V+  P  + GE P+A VV  P + +T+E++ + + K+
Sbjct: 427 GEWISSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVLKPGAKVTEEELLEHLAKK 486

Query: 170 VARYKRLRNVTFTNSIPKTTSGKILRREL 198
           VA++     V F + IPKT+ GK  ++ L
Sbjct: 487 VAKWWLPDRVVFVDEIPKTSVGKFDKKAL 515

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  172 bits (439), Expect = 3e-52
 Identities = 71/204 (34%), Positives = 103/204 (50%), Gaps = 14/204 (6%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR--- 57
           GYGMTET   +            GS GR   GVE +IV  D  + +PP +VGEL VR   
Sbjct: 225 GYGMTETGVPIIAPGDPAPP---GSCGRPRPGVEVRIVDEDG-REVPPGEVGELVVRPRR 280

Query: 58  GPILMPGYFNNEQAT--KLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAP 115
              +  GY+   +AT       + GW HTGD G  DE G L+ VDR K+ I+  G  ++ 
Sbjct: 281 PWAMFKGYYGMPEATAKAW---RNGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISS 337

Query: 116 AELEGVLVSHPEILDAVVIPFPDPEAG-EVPIAYVVRSPNSSLTKEDVQKFVVKQVARYK 174
            E+E  +++HP + +A V+  P      EV  A VV  P  +L  E + +F   ++  + 
Sbjct: 338 YEVEAAILAHPAVAEAAVVAVPSELGEDEVK-AVVVLRPGETLDPEALLEFCRDRLPYFM 396

Query: 175 RLRNVTFTNSIPKTTSGKILRREL 198
             R + F + +PKT + KI + EL
Sbjct: 397 VPRYIEFVDELPKTPTEKIQKAEL 420

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  172 bits (438), Expect = 6e-52
 Identities = 70/195 (35%), Positives = 111/195 (56%), Gaps = 3/195 (1%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           YGMTET   + + NPL G +  G+ G  + GVE +IV  D  +PL   +VGE+ VRGP +
Sbjct: 238 YGMTET--GMALSNPLDGERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNV 295

Query: 62  MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKEL-IKCNGFQVAPAELEG 120
              Y+N  +AT     ++GW  TGD+G  DE G   I+ R  +  IK  G++V+  E+E 
Sbjct: 296 FSEYWNKPEATAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEE 355

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
            L+ HP + +  VI  PDP+ GE  +A VV    ++LT  +++ +  +++A YK  + V 
Sbjct: 356 ALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLAELRAWAREKLAPYKIPKRVI 415

Query: 181 FTNSIPKTTSGKILR 195
             + +P+   GK+ +
Sbjct: 416 VVDELPRNAMGKVQK 430

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  173 bits (439), Expect = 3e-51
 Identities = 85/198 (42%), Positives = 115/198 (58%), Gaps = 3/198 (1%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYGMTET  VV+V NP   +Q  G+ G  V     +++  D    LP  +VGEL V+GP 
Sbjct: 357 GYGMTETSPVVSV-NPSQAIQ-VGTIGIPVPSTLCKVI-DDDGNELPLGEVGELCVKGPQ 413

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY+   +AT  I+D +GWL TGD+    E G + IVDR K++I  +GF V P ELE 
Sbjct: 414 VMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELED 473

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           VL + P +L    I  PD ++GE    +VV  P  +LTKE V + +   +  YK  + V 
Sbjct: 474 VLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVE 533

Query: 181 FTNSIPKTTSGKILRREL 198
           F + +P T  GKILRREL
Sbjct: 534 FRDELPTTNVGKILRREL 551

Length = 562

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  168 bits (427), Expect = 1e-50
 Identities = 54/135 (40%), Positives = 78/135 (57%), Gaps = 3/135 (2%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG TET  V T   P       GS GR + GVE +++  +  +P+PP +VGEL +RGP 
Sbjct: 279 GYGPTETTVVATANLPGDPEVKPGSIGRPLPGVEVKVL-DEEGEPVPPGEVGELCIRGPG 337

Query: 61  LMPGYFNNEQATKLIIDKEGWL--HTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAEL 118
           +  GY N+ + T     ++GW    TGDLG +DE G L I+ R  + +K  G ++ P E+
Sbjct: 338 VARGYLNDPELTAERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEI 397

Query: 119 EGVLVSHPEILDAVV 133
           E VL+ HP + +A V
Sbjct: 398 EAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  169 bits (429), Expect = 1e-49
 Identities = 82/198 (41%), Positives = 119/198 (60%), Gaps = 4/198 (2%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TE   +V+V NP      SGS G  V   E ++V  D    +PP + GELWV+GP 
Sbjct: 356 GYGLTECSPLVSV-NPYDLDYYSGSIGLPVPSTEIKLV-DDDGNEVPPGEPGELWVKGPQ 413

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY+   +AT  +I K+GWL TGD+   DE G L IVDR K++I  +GF V P E+E 
Sbjct: 414 VMLGYWQRPEATDEVI-KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIED 472

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           V++ HP++L+   +  P   +GE    +VV+  + SLT+E++     + +  YK  + V 
Sbjct: 473 VVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKK-DPSLTEEELITHCRRHLTGYKVPKLVE 531

Query: 181 FTNSIPKTTSGKILRREL 198
           F + +PK+  GKILRREL
Sbjct: 532 FRDELPKSNVGKILRREL 549

Length = 560

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  167 bits (426), Expect = 3e-49
 Identities = 87/210 (41%), Positives = 121/210 (57%), Gaps = 21/210 (10%)

Query: 1   GYGMTETCGVVTVENPL-------LGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGE 53
           GYG+TET    T  NP        LG+           GV+A+++  +TL+ LPP +VGE
Sbjct: 336 GYGLTETMAQ-THSNPPDRPKLQCLGIP--------TFGVDARVIDPETLEELPPGEVGE 386

Query: 54  LWVRGPILMPGYFNNEQATK---LIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNG 110
           + V GP +  GY+N  +AT    + ID + +  TGDLG  DE G  FI DR+K +I  +G
Sbjct: 387 IVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASG 446

Query: 111 FQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS--SLTKEDVQKFVVK 168
           F+V PAE+E +L  HP I +A VI  PDP  GE   A VV  P +    T+E++  +  +
Sbjct: 447 FKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAWARE 506

Query: 169 QVARYKRLRNVTFTNSIPKTTSGKILRREL 198
            +A YK  R V F +S+PK+ SGKIL R+L
Sbjct: 507 HMAAYKYPRIVEFVDSLPKSGSGKILWRQL 536

Length = 546

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  167 bits (424), Expect = 3e-49
 Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 10/202 (4%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG-- 58
            YG TET        P +    +GS+G  + G   + V  D   P+PP   GEL VR   
Sbjct: 321 IYGQTETGMGFIAGRPPV---KNGSSGLPLPGYAVRRV-DDEGNPVPPGV-GELVVRLPW 375

Query: 59  PILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAEL 118
           P +   Y+N+ +  K       W  TGD    DE G  ++  R  ++IK +G ++ P E+
Sbjct: 376 PGMALTYWNDPERYKEAY-FGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEI 434

Query: 119 EGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLT--KEDVQKFVVKQVARYKRL 176
           E VL++HP + +A V+  PDP  G++ +A+VV +         E++++ V + +  +   
Sbjct: 435 ESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNELAEEIRRHVARNIGPHAIP 494

Query: 177 RNVTFTNSIPKTTSGKILRREL 198
           R + F + +PKT SGKI RR L
Sbjct: 495 RKIRFVDELPKTASGKIQRRLL 516

Length = 528

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  161 bits (409), Expect = 2e-48
 Identities = 70/202 (34%), Positives = 106/202 (52%), Gaps = 7/202 (3%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           YG+TE     T   P    +   S G+ +  VE  +V  D      P +VGEL  RG  +
Sbjct: 150 YGLTE-AFRSTYLPPEELDRRPDSIGKAIPNVELWVVDEDG-NRCAPGEVGELVHRGANV 207

Query: 62  MPGYFNNEQATKLIID-----KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
           M GY+N+ +AT   +       E  L+TGDL   DE G L+ V R  ++IK  G++V+P 
Sbjct: 208 MKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPT 267

Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRL 176
           E+E V+ +HP + +A VI  PDP  G+  +A VV +   SL ++++ K   K +  Y   
Sbjct: 268 EIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVSADGESLDEKELLKHCRKHLPNYMVP 327

Query: 177 RNVTFTNSIPKTTSGKILRREL 198
             + F +S+PK  +GK+ R  L
Sbjct: 328 AEIVFVDSLPKNANGKVDRSAL 349

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  164 bits (417), Expect = 6e-48
 Identities = 81/211 (38%), Positives = 121/211 (57%), Gaps = 11/211 (5%)

Query: 1   GYGMTETCGVVT---VENPL-LGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWV 56
            YGMTET  V T    ++PL   V    + GR +  +E +IV  +T + +P  + GEL  
Sbjct: 347 AYGMTETSPVSTQTRTDDPLEKRVT---TVGRALPHLEVKIVDPETGETVPRGEQGELCT 403

Query: 57  RGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
           RG  +M GY+N+ + T   ID +GW+HTGDL   DE G + IV RIK++I   G  + P 
Sbjct: 404 RGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPR 463

Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRL 176
           E+E  L +HP+I D  V+  PD + GE   A+++  P ++LT+EDV+ F   ++A YK  
Sbjct: 464 EIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIP 523

Query: 177 RNVTFTNSIPKTTSGKI----LRRELIAKLR 203
           R + F +  P T +GKI    +R  +I +L 
Sbjct: 524 RYIRFVDEFPMTVTGKIQKFKMREMMIEELG 554

Length = 559

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  164 bits (416), Expect = 8e-48
 Identities = 80/198 (40%), Positives = 116/198 (58%), Gaps = 3/198 (1%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG++ET  V T  NP+   + SG+ G  +   E  I   D    LP  + GE+ +RGP 
Sbjct: 358 GYGLSETSPVATC-NPVDATEFSGTIGLPLPSTEVSIR-DDDGNDLPLGEPGEICIRGPQ 415

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY+N    T  ++  +G+  TGD+G  DE G   IVDR K++I  +GF V P E+E 
Sbjct: 416 VMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEE 475

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           V+ SHP +L+   +  PD  +GE    +VV+  + +LT+EDV+ F  +++  YKR + V 
Sbjct: 476 VVASHPGVLEVAAVGVPDEHSGEAVKLFVVKK-DPALTEEDVKAFCKERLTNYKRPKFVE 534

Query: 181 FTNSIPKTTSGKILRREL 198
           F   +PKT  GKILRREL
Sbjct: 535 FRTELPKTNVGKILRREL 552

Length = 557

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  158 bits (402), Expect = 9e-47
 Identities = 73/199 (36%), Positives = 109/199 (54%), Gaps = 12/199 (6%)

Query: 1   GYGMTETCG-VVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP 59
            YGMTETC  V T    +L        GR +AG E +I  VD  +       GE+ V+G 
Sbjct: 249 SYGMTETCSQVTTATPEML--HARPDVGRPLAGREIKIK-VDNKE-----GHGEIMVKGA 300

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
            LM GY    + T    +++GW +TGD+G  D  G L+++ R  +LI   G  + P E+E
Sbjct: 301 NLMKGYLYQGELTPAF-EQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIE 359

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNV 179
            VL  HP I +AVV+P PD E G+VP+AY+V    S +++  +  ++ +++A+YK     
Sbjct: 360 TVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVS--ESDISQAKLIAYLTEKLAKYKVPIAF 417

Query: 180 TFTNSIPKTTSGKILRREL 198
              + +P   SGKILR +L
Sbjct: 418 EKLDELPYNASGKILRNQL 436

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  158 bits (401), Expect = 2e-46
 Identities = 73/202 (36%), Positives = 109/202 (53%), Gaps = 5/202 (2%)

Query: 1   GYGMTETCGVVTVENP-LLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP 59
            YGMTE   +VTV  P     + + + GR V GVE +IV  D    +PP + GEL VRGP
Sbjct: 239 AYGMTE-VPLVTVGTPDDPDDKRAATDGRPVPGVEVRIV-DDDGNDVPPGEEGELQVRGP 296

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
            L  GY +    T+   D +GW  TGDLG  D  G L I  R K++I   G  ++  E+E
Sbjct: 297 QLFLGYLDPPDNTEAFTD-DGWFRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIE 355

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVV-KQVARYKRLRN 178
            +L+ HP + +  V+  PD   GE   A VV +P +SLT  ++ + +  + +A+ K    
Sbjct: 356 DLLLRHPAVAEVAVVAMPDERLGERVCAVVVPAPGASLTLAELTEHLAAQGLAKQKWPER 415

Query: 179 VTFTNSIPKTTSGKILRRELIA 200
           +   +++P+T SGK+ + EL  
Sbjct: 416 LEVVDALPRTPSGKVQKFELRE 437

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  159 bits (404), Expect = 3e-46
 Identities = 75/197 (38%), Positives = 113/197 (57%), Gaps = 2/197 (1%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           YG TE   + TV  P   ++  GSAGR V  VE ++V  D    + P +VGE+  R P L
Sbjct: 319 YGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVV-DDDGNDVAPGEVGEIVHRSPQL 377

Query: 62  MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGV 121
           M GY+++ + T     + GW H+GDLG  DE G + +VDR K++IK  G  VA  E+E  
Sbjct: 378 MLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEA 436

Query: 122 LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTF 181
           L +HP + +  VI  PDP+  E   A VV    +++T++++      ++A +K  + V F
Sbjct: 437 LYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIAHCRARLAGFKVPKRVIF 496

Query: 182 TNSIPKTTSGKILRREL 198
            + +P+  SGKIL+REL
Sbjct: 497 VDELPRNPSGKILKREL 513

Length = 523

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  156 bits (395), Expect = 7e-45
 Identities = 84/205 (40%), Positives = 125/205 (60%), Gaps = 2/205 (0%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TE+   VT  N L   +  GS G      EA I+ ++T + LPP ++GE+ V+GP 
Sbjct: 354 GYGLTES-SPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQ 412

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY+N  + T  ++ ++GWLHTGD+GY DE G  ++ DR K++I  +GF V P E+E 
Sbjct: 413 IMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEE 471

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           VL  H ++ + V I  PDP  GE   A+VV    +  ++E++ +F  K +A YK  +   
Sbjct: 472 VLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYE 531

Query: 181 FTNSIPKTTSGKILRRELIAKLRSK 205
           F + +PKTT GKILRR LI + + K
Sbjct: 532 FRDELPKTTVGKILRRVLIEEEKRK 556

Length = 563

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  152 bits (387), Expect = 2e-44
 Identities = 79/204 (38%), Positives = 117/204 (57%), Gaps = 10/204 (4%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR--G 58
            YG TE   +V      LG    GS G+ V G E  +V  D  +P+PP +VGE+ V+   
Sbjct: 238 FYGQTE-ANLVVGNCAALGPARPGSMGKPVPGHEVAVV-DDAGRPVPPGEVGEIAVKRPD 295

Query: 59  PILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAEL 118
           P++  GY+NN +AT        WL TGDLG  D  G L+   R  ++IK +G+++ PAE+
Sbjct: 296 PVMFLGYWNNPEATAAKF-AGDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEI 354

Query: 119 EGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV----RSPNSSLTKEDVQKFVVKQVARYK 174
           E  L+ HP +L+A V+  PDPE GE+  A+VV      P+  L   ++Q+ V  ++A ++
Sbjct: 355 EECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAEGVEPSDELA-TELQELVKSRLAAHE 413

Query: 175 RLRNVTFTNSIPKTTSGKILRREL 198
             R + F + +P TT+GKI RREL
Sbjct: 414 YPREIEFVDELPMTTTGKIRRREL 437

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score =  152 bits (385), Expect = 1e-43
 Identities = 66/200 (33%), Positives = 108/200 (54%), Gaps = 5/200 (2%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG--- 58
           YGMTET   +  + P    +   S GR     EA+I      +PLP  ++GE+ ++G   
Sbjct: 319 YGMTETIVGIIGDRPG-DKRRWPSIGRPGFCYEAEIRDDHN-RPLPAGEIGEICIKGVPG 376

Query: 59  PILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAEL 118
             +   Y+ + +AT  +++ +GWLHTGD GY DE G  + VDR   +IK  G  V+  EL
Sbjct: 377 KTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVEL 436

Query: 119 EGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRN 178
           E ++ +HP+I D VV+   D    E   A+VV +   +L++E+   F  + +A++K    
Sbjct: 437 ENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPSY 496

Query: 179 VTFTNSIPKTTSGKILRREL 198
           +     +P+  SGKI+++ L
Sbjct: 497 LEIRKDLPRNCSGKIIKKNL 516

Length = 517

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  148 bits (377), Expect = 1e-43
 Identities = 68/203 (33%), Positives = 107/203 (52%), Gaps = 7/203 (3%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVD----TLKPLPPNQVGELWV 56
           GYGMTE  GV  + NP  G +  GS G  +     ++  +D      +   P +VG L +
Sbjct: 153 GYGMTEGTGVSAI-NPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAI 211

Query: 57  RGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
           RGP + PGY N+       ++ +GWL+TGDLG  D  G L++  R K+LI   G  + P 
Sbjct: 212 RGPNVFPGYLNDAHNAGARLE-DGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQ 270

Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVA-RYKR 175
            +E  L+ HP +  A  +  PD  AGE+P+AYV   P +++T+ ++  FV  ++  R   
Sbjct: 271 MIEEALLRHPAVALAAAVGRPDAYAGELPVAYVQLKPGATVTEGELLAFVKARIPERAAV 330

Query: 176 LRNVTFTNSIPKTTSGKILRREL 198
            + +   +++P T  GKI +  L
Sbjct: 331 PKAIYIIDALPLTAVGKIFKPRL 353

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  151 bits (383), Expect = 1e-43
 Identities = 74/228 (32%), Positives = 113/228 (49%), Gaps = 46/228 (20%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET GV TV  P  G    G+ G+ + GVE +I            + GE+ VRGP 
Sbjct: 245 GYGLTETSGVATVNRP--GDIRIGTVGKPLPGVEVRIA-----------EDGEILVRGPN 291

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIK-CNGFQVAPAELE 119
           +M GY+ N +AT   +D++GWLHTGD+G  DE G L I DR K+LI    G  +AP  +E
Sbjct: 292 VMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIE 351

Query: 120 GVLVSHPEILDAVVI----PF------PDPE-----AGEVPIAYVVRSPNSSLTK--EDV 162
             L + P I  AVV+    P+       DPE     A +  + +   +  +   +    +
Sbjct: 352 NALKASPYISQAVVVGDDRPYLTALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALI 411

Query: 163 QKFVVK---QVARYKRLRNVTFTNSIPK---------TTSGKILRREL 198
           +K V +   ++AR ++++       +PK         T + K+ RR +
Sbjct: 412 RKEVEEANARLARVEQIKKFVL---LPKEFSIEDGELTPTMKLRRRVV 456

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  149 bits (379), Expect = 2e-43
 Identities = 76/205 (37%), Positives = 106/205 (51%), Gaps = 11/205 (5%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWV---- 56
           GYG TET   + V N        GS GR   G    I+  D    LPP + G++ V    
Sbjct: 228 GYGQTETG--LLVANFPGMEVKPGSMGRPAPGYRVAII-DDEGNELPPGEEGDIAVRVKP 284

Query: 57  RGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
           R P L  GY  + + T+  I +  W  TGD    DE G  + V R  ++IK +G+++ P 
Sbjct: 285 RPPGLFRGYLKDPEKTEATI-RGDWYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPF 343

Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN---SSLTKEDVQKFVVKQVARY 173
           E+E  L+ HP + +A V+  PDP  GEV  A+VV +P    S    +++Q+ V K+ A Y
Sbjct: 344 EVESALIEHPAVAEAAVVGSPDPVRGEVVKAFVVLAPGYQPSEELAKELQEHVKKRTAPY 403

Query: 174 KRLRNVTFTNSIPKTTSGKILRREL 198
           K  R + F   +PKT SGKI R EL
Sbjct: 404 KYPREIEFVEELPKTVSGKIRRVEL 428

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  148 bits (375), Expect = 2e-42
 Identities = 68/205 (33%), Positives = 117/205 (57%), Gaps = 2/205 (0%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           G+GMTET   V + +     +  GS G+ V   + +++  +    +   +VGEL +RGP 
Sbjct: 294 GFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENK-NKVEVGEVGELLIRGPN 352

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M  Y+N   AT+  I ++GWL TGDL   DE G ++IV R KE+I   G  + P E+E 
Sbjct: 353 VMKEYWNRPDATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQ 411

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           V+    ++ +  V+     + GE+PIA++V+  +S L ++DV +     +A+YK  + + 
Sbjct: 412 VINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKYKIPKEIV 471

Query: 181 FTNSIPKTTSGKILRRELIAKLRSK 205
           F   +PK  +GKI + +L+ +L+S+
Sbjct: 472 FLKELPKNATGKIQKAQLVNQLKSR 496

Length = 496

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  150 bits (380), Expect = 2e-42
 Identities = 60/208 (28%), Positives = 90/208 (43%), Gaps = 40/208 (19%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET  VV+V  P       G+ G+ + G+E +I              GE+ VRGP 
Sbjct: 383 GYGLTETSAVVSVNPP--DRFVLGTVGKPLPGIEVKIA-----------DDGEILVRGPN 429

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKC-NGFQVAPAELE 119
           +M GY+ N +AT     ++GW  TGDLG  DE G L I  R KELIK  NG  +AP  +E
Sbjct: 430 VMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIE 489

Query: 120 GVLVSHPEILDAVVI----PFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKR 175
             L   P I    V+     F         +A +V   ++              + ++  
Sbjct: 490 SKLAKSPLIEQICVVGDDKKF--------LVALIVPDFDA--------------LEKWAE 527

Query: 176 LRNVTFTNSIPKTTSGKILRRELIAKLR 203
             N   + S  +      L + ++ ++ 
Sbjct: 528 SLNKVISASREELARDPKLLKLILPRVN 555

Length = 613

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  148 bits (375), Expect = 4e-42
 Identities = 76/212 (35%), Positives = 119/212 (56%), Gaps = 20/212 (9%)

Query: 2   YGMTETCGVVTV--ENPLLGVQNSGSAG---RLVA--GVE---AQIVCV---DTLKPLPP 48
           YG+TET G +TV    P     ++  A    RL A  GV     + V V   +T+K +P 
Sbjct: 312 YGLTETYGPITVCEWKPEW---DALPAEERARLKARQGVRYVGLEEVDVVDPETMKDVPR 368

Query: 49  N--QVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELI 106
           +   +GE+ +RG  +M GY+ N +AT+      GW H+GDL      G + I DR K++I
Sbjct: 369 DGKTIGEIVMRGNTVMKGYYKNPEATEEAF-AGGWFHSGDLAVVHPDGYIEIKDRSKDII 427

Query: 107 KCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFV 166
              G  ++  E+EGVL  HP +L+A V+  PD + GE P A+VV  P +S+T+E++ ++ 
Sbjct: 428 ISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAFVVLKPGASVTEEELIEYC 487

Query: 167 VKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
            +++A +K  + V F   +PKT +GKI +  L
Sbjct: 488 REKLAHFKVPKTVEFV-ELPKTATGKIQKFVL 518

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  147 bits (372), Expect = 1e-41
 Identities = 76/201 (37%), Positives = 123/201 (61%), Gaps = 9/201 (4%)

Query: 2   YGMTETCGVVTVENPLLG---VQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG 58
           +G TE   V  +   LLG   ++  GS G+++  V A++V  + +  +P  +VGE+  R 
Sbjct: 323 FGQTEMSPVTCM---LLGEDAIRKLGSVGKVIPTVAARVV-DENMNDVPVGEVGEIVYRA 378

Query: 59  PILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAEL 118
           P LM GY+NN +AT       GW H+GDL   DE G +++VDR K++I   G  +  AE+
Sbjct: 379 PTLMSGYWNNPEATAEAFAG-GWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEV 437

Query: 119 EGVLVSHPEILDAVVIPFPDPEAGEVPIAYV-VRSPNSSLTKEDVQKFVVKQVARYKRLR 177
           E VL SHP+I++  VI   D + GEVP+A   VR+ +++LT ED+ +F+  ++ARYK  +
Sbjct: 438 ENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPK 497

Query: 178 NVTFTNSIPKTTSGKILRREL 198
            +   +++P+  +GK+L+ EL
Sbjct: 498 ALEIVDALPRNPAGKVLKTEL 518

Length = 542

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  145 bits (367), Expect = 3e-41
 Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 12/203 (5%)

Query: 2   YGMTETCGVVT----VENPLLGVQNSGSAGR-LVAGVEAQIVCVDTLKPLPPNQVGELWV 56
           +GM E     T      + ++  Q     GR +    E +IV     +P+PP +VGEL  
Sbjct: 287 FGMAEGLVNYTRLDDPPDVIMRTQ-----GRPISPADEIRIVDDQG-EPVPPGEVGELLT 340

Query: 57  RGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
           RGP  + GY+   +        +G+  TGDL   D  G   +V RIK+ I   G +++P 
Sbjct: 341 RGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPE 400

Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQ-VARYKR 175
           E+E +L+SHP + DA V+  PD   GE   A+VV    ++ T  +++ F+ +Q +A++K 
Sbjct: 401 EIENLLLSHPAVADAAVVGMPDEVLGERICAFVVPRGGAAPTLAELRAFLREQGLAKFKL 460

Query: 176 LRNVTFTNSIPKTTSGKILRREL 198
              +   +S+P T  GK+ ++ L
Sbjct: 461 PDRLEVVDSLPLTPVGKVDKKAL 483

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  146 bits (369), Expect = 4e-41
 Identities = 75/199 (37%), Positives = 115/199 (57%), Gaps = 7/199 (3%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCV--DTLKPLPPNQVGELWVRGP 59
           YG+TET     + NPL   + +GS G  +   +A   C+  D    L   ++GEL ++GP
Sbjct: 361 YGLTETSPAACI-NPLTLKEYNGSIGLPIPSTDA---CIKDDAGTVLAIGEIGELCIKGP 416

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
            +M GY+   + T  ++D +GWLHTGD+   DE G ++IVDR K++I  +GF V P E+E
Sbjct: 417 QVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIE 476

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNV 179
            V+   P +L+   +  PD ++GE+    +V+  + +LT EDV+      +  YK+ R +
Sbjct: 477 DVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKK-DPALTAEDVKAHARANLTGYKQPRII 535

Query: 180 TFTNSIPKTTSGKILRREL 198
            F   +PKT  GKILRREL
Sbjct: 536 EFRKELPKTNVGKILRREL 554

Length = 560

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score =  145 bits (368), Expect = 5e-41
 Identities = 71/199 (35%), Positives = 111/199 (55%), Gaps = 6/199 (3%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           YG TE     T+  P    +  G+ GR   GV  +I+  +    +P   VG ++V     
Sbjct: 355 YGSTE-VAFATIATPEDLAEAPGTVGRPPKGVTVKIL-DENGNEVPRGVVGRIFVGNGFP 412

Query: 62  MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGV 121
             GY +     K IID  G L +GD+GYFDE G LF+  R  ++I   G  V PAE+E +
Sbjct: 413 FEGYTDG--RDKQIID--GLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDL 468

Query: 122 LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTF 181
           L  HP++++A VI   D E G+   A+VV++P ++L ++ ++ +V   +ARYK  R+V F
Sbjct: 469 LAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDNLARYKVPRDVVF 528

Query: 182 TNSIPKTTSGKILRRELIA 200
            + +P+  +GK+L+REL  
Sbjct: 529 LDELPRNPTGKVLKRELRE 547

Length = 549

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score =  145 bits (368), Expect = 6e-41
 Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 17/211 (8%)

Query: 2   YGMTET--CGVVTVENPLLGVQNSGS--------AGRLVAGVEAQIVCVDTLKPLPPNQV 51
           +GMTET  C   T      G Q+            G  V G E +I   +T + LP    
Sbjct: 360 WGMTETHTCDTFT-----AGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAE 414

Query: 52  GELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGF 111
           GE+ VR P L+ GY+N  +AT   + ++GWLHTGD+G  DE G L  + R KE++K NG 
Sbjct: 415 GEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGM 473

Query: 112 QVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVA 171
            V P+E+E +L  HP +L + V+  PDP+ G+VP+A+V   P + LT   +Q +  + +A
Sbjct: 474 SVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAALQAWCRENMA 533

Query: 172 RYKRLRNVTFTNSIPKTTSGKILRRELIAKL 202
            YK +  +   +++P T +GK+ +++L A  
Sbjct: 534 VYK-VPEIRIVDALPMTATGKVRKQDLQALA 563

Length = 567

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  144 bits (366), Expect = 1e-40
 Identities = 73/212 (34%), Positives = 113/212 (53%), Gaps = 10/212 (4%)

Query: 1   GYGMTETCGVV---TVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR 57
            YGMTET  V    T  + L   +   + GR    +E ++V  D    +P  ++GEL  R
Sbjct: 349 AYGMTETSPVSLQTTAADDL--ERRVETVGRTQPHLEVKVVDPDG-ATVPRGEIGELCTR 405

Query: 58  GPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAE 117
           G  +M GY+NN +AT   ID++GW+HTGDL   DE G + IV R K++I   G  + P E
Sbjct: 406 GYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPRE 465

Query: 118 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR 177
           +E  L +HP + D  V   PD + GE  +A+V   P  + ++E++++F   ++A +K  R
Sbjct: 466 IEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREFCKARIAHFKVPR 525

Query: 178 NVTFTNSIPKTTSGKI----LRRELIAKLRSK 205
              F +  P T +GK+    +R   I +L   
Sbjct: 526 YFRFVDEFPMTVTGKVQKFRMREISIEELALP 557

Length = 558

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  144 bits (365), Expect = 2e-40
 Identities = 76/206 (36%), Positives = 111/206 (53%), Gaps = 3/206 (1%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTL-KPLPPNQVGELWVRGP 59
           GYG+TET  ++ V NP+   +  G  G      E +IV  +   + +P  + GEL VRGP
Sbjct: 367 GYGLTETSPII-VGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGP 425

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
            +  GY+N  + T      +GW  TGD+   +E G + IVDRIKELI   GF V PAE+E
Sbjct: 426 QVFKGYWNRPEETAKSF-LDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVE 484

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNV 179
            VL  HP + DA V+  P  +  E  +A VV  P ++L  E ++ +  + + RYK  R  
Sbjct: 485 EVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRF 544

Query: 180 TFTNSIPKTTSGKILRRELIAKLRSK 205
              + +P+   GK+ RRE+  +L  K
Sbjct: 545 YHVDELPRDQLGKVRRREVREELLEK 570

Length = 573

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  143 bits (363), Expect = 6e-40
 Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 7/203 (3%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVD----TLKPLPPNQVGELWV 56
           GYG+TE   V +V NP  G +  GS G  +     ++V +D     L+    ++VG L +
Sbjct: 364 GYGLTEATCVSSV-NPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCI 422

Query: 57  RGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
            GP +  GY        L ++ +GWL+TGDLG  D  G  ++  R K+LI   G  + PA
Sbjct: 423 AGPNVFSGYLEAAHNKGLWLE-DGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPA 481

Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVA-RYKR 175
            +E  L+ HP +  A  +  PD  AGE+P+AYV   P +S T+ ++  F    +A R   
Sbjct: 482 AIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAV 541

Query: 176 LRNVTFTNSIPKTTSGKILRREL 198
            ++V   +++PKT  GKI +  L
Sbjct: 542 PKHVRILDALPKTAVGKIFKPAL 564

Length = 632

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  140 bits (356), Expect = 2e-39
 Identities = 69/204 (33%), Positives = 107/204 (52%), Gaps = 6/204 (2%)

Query: 2   YGMTETCGVVTV----ENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR 57
           YG TE   V+T     ++     +   S GR   G+   ++  +  + +   +VGE+ VR
Sbjct: 313 YGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALL-DEDGREVAQGEVGEICVR 371

Query: 58  GPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAE 117
           GP++M GY+N  + T     ++GWLHTGD+   DE G  +IVDR K++I   GF V P E
Sbjct: 372 GPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPRE 430

Query: 118 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR 177
           +E VL  HP +    VI  PD + GE   A VV  P +++   ++Q  V ++       +
Sbjct: 431 VEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVKERKGSVHAPK 490

Query: 178 NVTFTNSIPKTTSGKILRRELIAK 201
            V F +S+P T  GK  ++ L A+
Sbjct: 491 QVDFVDSLPLTALGKPDKKALRAR 514

Length = 524

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  140 bits (355), Expect = 2e-39
 Identities = 68/198 (34%), Positives = 109/198 (55%), Gaps = 6/198 (3%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           YGMTET   +   NP  G + +G+ G  + GV  ++   +T   LPP ++G + V+GP +
Sbjct: 301 YGMTETN--MNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNV 358

Query: 62  MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGV 121
             GY+   + T      +G+  TGDLG  DE G + IV R K+LI   G+ V P E+EG 
Sbjct: 359 FKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGE 418

Query: 122 LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTF 181
           +   P ++++ VI  P P+ GE   A VV  P ++L +  +   +  ++AR+K+ + V F
Sbjct: 419 IDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAILAALKGRLARFKQPKRVFF 478

Query: 182 TNSIPKTTSGK----ILR 195
            + +P+ T GK    +LR
Sbjct: 479 VDELPRNTMGKVQKNLLR 496

Length = 504

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score =  140 bits (354), Expect = 3e-39
 Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 4/203 (1%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
            YG+TETC   T+      ++  GS GR +A VE +I      + LPPN  GE+ +RGP 
Sbjct: 296 AYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPK 354

Query: 61  LMPGYFNN-EQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
           +  GY+ + E+  +       W  +GD+GY DE G L++ DR K++I   G  +A +E+E
Sbjct: 355 VTKGYWKDPEKTAEAFYG--DWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVE 412

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNV 179
            V+   PE+ +A VI   D   GE   A VV +P ++LT E + +   +++A +K  R +
Sbjct: 413 RVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQRLASFKVPRQL 472

Query: 180 TFTNSIPKTTSGKILRRELIAKL 202
              + +P+  SGK+L+R L  +L
Sbjct: 473 KVRDELPRNPSGKVLKRVLRDEL 495

Length = 497

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  135 bits (343), Expect = 1e-37
 Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 5/178 (2%)

Query: 24  GSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLH 83
           G++G+ V G E ++V  D  + +   ++GELWVRG     GY+N  + T+       W  
Sbjct: 330 GTSGKPVPGYEVKLVDEDG-EEVADGEIGELWVRGDSSAAGYWNRREKTRETF-VGEWTR 387

Query: 84  TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGE 143
           TGD  Y DE G  +   R  +++K +G  V+P E+E  L+ HP +L+A V+   D +   
Sbjct: 388 TGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLT 447

Query: 144 VPIAYVVRSPN---SSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
            P A+VV       S   + +++ FV  ++A YK  R + F + +PKT +GKI R +L
Sbjct: 448 KPKAFVVLKDGYQPSPELETELKDFVKDKLAPYKYPRWIEFVDELPKTATGKIQRFKL 505

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  136 bits (344), Expect = 1e-37
 Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 5/199 (2%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET  V +  NP   +   G+ G  V G   +++  D  + LP  + GEL ++GP 
Sbjct: 364 GYGLTETSPVAST-NPYGELARLGTVGIPVPGTALKVIDDDGNE-LPLGERGELCIKGPQ 421

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY+   +AT   +D EGW  TGD+   D  G + IVDR K+LI  +GF V P E+E 
Sbjct: 422 VMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIED 481

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVV-RSPNSSLTKEDVQKFVVKQVARYKRLRNV 179
           V+++HP++ +   I  PD  +GE    +VV R P   L+ E+++ +  +    YK  +++
Sbjct: 482 VVMAHPKVANCAAIGVPDERSGEAVKLFVVARDP--GLSVEELKAYCKENFTGYKVPKHI 539

Query: 180 TFTNSIPKTTSGKILRREL 198
              +S+P T  GKILRREL
Sbjct: 540 VLRDSLPMTPVGKILRREL 558

Length = 562

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score =  134 bits (338), Expect = 2e-37
 Identities = 70/201 (34%), Positives = 109/201 (54%), Gaps = 7/201 (3%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           G G TE   +     P  G    G+ GR V G EA++V  ++ + +P   VG+LWVRGP 
Sbjct: 239 GIGSTEVLHIFISNRP--GAARPGTTGRPVPGYEARLV-DESGREVPAGTVGDLWVRGPS 295

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           L PGY+N  + T+  + ++GWL TGD    D  G      R  ++IK +G  V+P E+E 
Sbjct: 296 LAPGYWNLPEKTQRTL-RDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEA 354

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP---NSSLTKEDVQKFVVKQVARYKRLR 177
            L  HP + +A V+  PD +      A+VV  P      L + D+ +F+ +++A YK  R
Sbjct: 355 ALGEHPAVAEAAVVAVPDEDGLVRLKAFVVPRPGEAIQQLLERDLHRFLRERLAPYKCPR 414

Query: 178 NVTFTNSIPKTTSGKILRREL 198
            + F +++P+T +GK+ R  L
Sbjct: 415 QIEFLDTLPRTATGKLQRFRL 435

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  134 bits (339), Expect = 3e-37
 Identities = 64/199 (32%), Positives = 104/199 (52%), Gaps = 2/199 (1%)

Query: 1   GYGMTETCGVVTVE-NPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP 59
           G+GM+E   V  +  +  +    +G+AG     V+ ++V  D     P    GEL +RGP
Sbjct: 282 GFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVV-DDQGNDCPAGVPGELLLRGP 340

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
            L PGY+   QAT      +GW  TGD+   D  G  ++VDR K++    G  V PAE+E
Sbjct: 341 NLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIE 400

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNV 179
            VL  HP I +  V+   D + GEV    +V +  + L  E ++  +  ++A+YK  +++
Sbjct: 401 AVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLAKYKVPKHL 460

Query: 180 TFTNSIPKTTSGKILRREL 198
              +++P+T SGK+ +  L
Sbjct: 461 RLVDALPRTASGKLQKARL 479

Length = 488

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  133 bits (336), Expect = 1e-36
 Identities = 71/200 (35%), Positives = 112/200 (56%), Gaps = 4/200 (2%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVD-TLKPLPPNQVGELWVRGP 59
           G+GMTETC   T  +P  G    GS G ++ G+E  +V +D   K LPP +VGEL +RGP
Sbjct: 343 GWGMTETCSPGT-GHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGP 401

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
            +  GY+N  + +      + +L TGD+GY D  G  F+VDR K++I   GF V P  +E
Sbjct: 402 NVTRGYWNRPEESAEAFVGDRFL-TGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIE 460

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYV-VRSPNSSLTKEDVQKFVVKQVARYKRLRN 178
             +  HP + + +VI  PD   GE   A+V +R      + ++++ F+  ++ +++    
Sbjct: 461 QAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELPVA 520

Query: 179 VTFTNSIPKTTSGKILRREL 198
           V F + +P+T  GK+ R EL
Sbjct: 521 VEFVDELPRTPVGKLSRHEL 540

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score =  133 bits (336), Expect = 2e-36
 Identities = 64/186 (34%), Positives = 96/186 (51%), Gaps = 14/186 (7%)

Query: 25  SAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQAT------KLIIDK 78
           S GR + G E +IV  +T +PLP  +VGE+WVRGP +  GY+N  +AT      +L  D+
Sbjct: 356 SCGRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDE 415

Query: 79  EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVL-VSHPEILDAVVIPFP 137
            GWL TGDLG+  + G+L++  R+K+LI   G    P ++E  +  +HP +       F 
Sbjct: 416 GGWLRTGDLGFLHD-GELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFS 474

Query: 138 DPEAGEVPIAYV--VRSPNSSLTKEDVQKFVVKQVAR-YK-RLRNVTFTN--SIPKTTSG 191
               GE  +  V  VR          + + +   VAR +     +V      ++PKT+SG
Sbjct: 475 VDGDGEERLVVVAEVRRRGLPADLAALAEAIRAAVAREHGVAPADVVLVRPGTLPKTSSG 534

Query: 192 KILRRE 197
           KI RR 
Sbjct: 535 KIQRRA 540

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score =  132 bits (335), Expect = 2e-36
 Identities = 69/207 (33%), Positives = 110/207 (53%), Gaps = 8/207 (3%)

Query: 2   YGMTETCGVVTVENPLL-----GVQ-NSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELW 55
           +G+ E  G +TV  P L     G     G+ G    G+E QI   D  + LPP + GE+ 
Sbjct: 312 FGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQ-DDEGRELPPGETGEIC 370

Query: 56  VRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAP 115
           V GP +  GY+NN +A      ++GW  TGDLG+ D  G L+I  R  ++    G  V P
Sbjct: 371 VIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYP 429

Query: 116 AELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKR 175
            E+E  L++HP + +  V+  PDP  GEV +A  V    + + + ++  ++  +VARYK 
Sbjct: 430 REIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAWLDGKVARYKL 489

Query: 176 LRNVTFTNSIPKTTSGKILRRELIAKL 202
            +   F +++PK+  GKI ++ +  +L
Sbjct: 490 PKRFFFWDALPKSGYGKITKKMVREEL 516

Length = 528

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score =  129 bits (327), Expect = 1e-35
 Identities = 73/206 (35%), Positives = 107/206 (51%), Gaps = 12/206 (5%)

Query: 4   MTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVD---TLKPLPPNQVGELWVRG-- 58
            TET  ++    P + V+  GS GR + G+EA ++  D         P QVGEL ++   
Sbjct: 241 QTETGAIMIANYPGIPVK-PGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGW 299

Query: 59  PILMPGYFNNEQATKL-IIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAE 117
           P +  GY  NE+      +D  GW  TGDL Y DE G  + V R  ++IK  G  V P E
Sbjct: 300 PSMFRGYLGNEERYASSFVD--GWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFE 357

Query: 118 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLT---KEDVQKFVVKQVARYK 174
           +E  L+ HP + +A VI  PDP AGE+  A+V   P    +   + ++  F  +++    
Sbjct: 358 VESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEPSEELRRELLTFARQRLGAAV 417

Query: 175 RLRNVTFTNSIPKTTSGKILRRELIA 200
             R + F +++PKT SGKI+RR L A
Sbjct: 418 APREIHFVDNLPKTRSGKIMRRLLKA 443

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  130 bits (329), Expect = 1e-35
 Identities = 78/211 (36%), Positives = 121/211 (57%), Gaps = 11/211 (5%)

Query: 2   YGMTETC--GVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP 59
           YG TE+    VV +++PL   +   + G   AGVE ++V  +  K LPP   GE   RGP
Sbjct: 333 YGSTESSPHAVVNLDDPL--SRFMHTDGYAAAGVEIKVV-DEARKTLPPGCEGEEASRGP 389

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
            +  GY +  + T   +D+EGW ++GDL   DE G + I  R K++I   G  ++  E+E
Sbjct: 390 NVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVE 449

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVV-RSPNSSLTKEDVQKFVVKQ-VARYKRLR 177
            +L+ HP+I DA V+  PD   GE   AYVV ++P+ SLT E+V  F  ++ VA+YK   
Sbjct: 450 DILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYPE 509

Query: 178 NVTFTNSIPKTTSGKI----LRRELIAKLRS 204
           ++   + +P+T SGKI    LR++++ +L  
Sbjct: 510 HIVVIDKLPRTASGKIQKFLLRKDIMRRLTQ 540

Length = 547

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score =  130 bits (328), Expect = 2e-35
 Identities = 59/203 (29%), Positives = 100/203 (49%), Gaps = 6/203 (2%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           Y  +E  GV TV      + + GS G+ V G     +  +    LPP ++G ++      
Sbjct: 294 YASSEGGGV-TVITSEDWLAHPGSVGKAVLGEVR--ILDEDGNELPPGEIGTVYFEMDGY 350

Query: 62  MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGV 121
              Y N+ + T    +  GW+  GD+GY DE G L++ DR  ++I   G  + P E+E +
Sbjct: 351 PFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENL 410

Query: 122 LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQK---FVVKQVARYKRLRN 178
           LV+HP++ D  V   PD E GE   A V  +  +        +   ++  ++A YK  R+
Sbjct: 411 LVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRS 470

Query: 179 VTFTNSIPKTTSGKILRRELIAK 201
           + F + +P+T +GK+ +R L  +
Sbjct: 471 IDFEDELPRTPTGKLYKRRLRDR 493

Length = 502

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score =  130 bits (328), Expect = 2e-35
 Identities = 71/200 (35%), Positives = 110/200 (55%), Gaps = 6/200 (3%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           Y  TE  G++    P        +AGR   G E +I+  D  + +P  +VG ++VR    
Sbjct: 344 YNATEA-GMIATATPADLRAAPDTAGRPAEGTEIRILDQD-FREVPTGEVGTIFVRNDTQ 401

Query: 62  MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGV 121
             GY     +TK   D  G++ +GD+GY DE+G+LF+V R  E+I   G  V P E+E  
Sbjct: 402 FDGY--TSGSTKDFHD--GFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKT 457

Query: 122 LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTF 181
           L +HP++ +A VI   D + G+   A+VV  P +S T E +++ V   +A YK  R++  
Sbjct: 458 LATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVRDNLANYKVPRDIVV 517

Query: 182 TNSIPKTTSGKILRRELIAK 201
            + +P+  +GKILRREL A+
Sbjct: 518 LDELPRGATGKILRRELQAR 537

Length = 537

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  128 bits (324), Expect = 3e-35
 Identities = 72/205 (35%), Positives = 104/205 (50%), Gaps = 12/205 (5%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR--- 57
           GYG TET     + N        GS GR + G   ++V +D      P   GE+ +    
Sbjct: 230 GYGQTET--TAMIGNSPGQKVKPGSMGRPLPGY--RVVLLDDEGKEIPVTEGEIALDLGD 285

Query: 58  GPI-LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
            PI LM GY  + + T       G+  TGD  Y DE G L+ V R  ++ K + ++++P 
Sbjct: 286 RPIGLMLGYMGDPEKTAAAFR-GGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPF 344

Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN---SSLTKEDVQKFVVKQVARY 173
           E+E  L+ HP + +A V+P PDP    VP AY+V  P    S     ++   V +++A Y
Sbjct: 345 EVESALLEHPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYEPSRELALELFAHVRERLAPY 404

Query: 174 KRLRNVTFTNSIPKTTSGKILRREL 198
           KR+R + F   +PKT SGKI R EL
Sbjct: 405 KRIRRIEFVGELPKTISGKIRRVEL 429

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  128 bits (323), Expect = 6e-35
 Identities = 72/202 (35%), Positives = 113/202 (55%), Gaps = 8/202 (3%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLP--PNQVGELWVRGP 59
           YGMTET  ++T+     G +  G  G  +AGVE ++V  +   P+P     VGEL VRGP
Sbjct: 273 YGMTET--LITLSTRADGERRPGWVGLPLAGVETRLV-DEDGGPVPHDGETVGELQVRGP 329

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIK-ELIKCNGFQVAPAEL 118
            L  GY N   AT      +GW  TGD+   D  G   IV R   +LIK  G+++   E+
Sbjct: 330 TLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEI 389

Query: 119 EGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRN 178
           E  L+ HP + +A V+  PD + G+  +AYVV      +  +++  FV +Q++ +KR R 
Sbjct: 390 ETALLGHPGVREAAVVGVPDDDLGQRIVAYVV--GADDVAADELIDFVAQQLSVHKRPRE 447

Query: 179 VTFTNSIPKTTSGKILRRELIA 200
           V F +++P+   GK+L+++L++
Sbjct: 448 VRFVDALPRNAMGKVLKKQLLS 469

Length = 471

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  127 bits (322), Expect = 1e-34
 Identities = 64/198 (32%), Positives = 109/198 (55%), Gaps = 4/198 (2%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           YG TE+ G VT       + + G+ G+   G E + V  D  +PLP  ++GE++ R    
Sbjct: 303 YGSTES-GAVTFATSEDALSHPGTVGKAAPGAELRFVDEDG-RPLPQGEIGEIYSRIAG- 359

Query: 62  MPGY-FNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
            P + ++N+   +  ID+ G++ +GD+GY D  G LF+ DR ++++   G  + PAE+E 
Sbjct: 360 NPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEA 419

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           VL + P + D  V   PD E GE  +A V   P ++L + D++  +  ++A YK  +++ 
Sbjct: 420 VLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKARLAGYKVPKHIE 479

Query: 181 FTNSIPKTTSGKILRREL 198
               +P+  SGKI +R L
Sbjct: 480 IMAELPREDSGKIFKRRL 497

Length = 509

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score =  128 bits (323), Expect = 1e-34
 Identities = 77/219 (35%), Positives = 113/219 (51%), Gaps = 22/219 (10%)

Query: 2   YGMTETCGVVTV--ENP------------LLGVQNSGSAGRLVAGVEAQIVCVDTLKPLP 47
           YG+TET G  TV    P            L   Q  G    L  GV   ++  DT++P+P
Sbjct: 327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQ--GVRYPLQEGV--TVLDPDTMQPVP 382

Query: 48  PN--QVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKEL 105
            +   +GE+  RG I+M GY  N +AT+      GW HTGDL      G + I DR K++
Sbjct: 383 ADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDI 441

Query: 106 IKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKF 165
           I   G  ++  E+E VL  HP +L A V+  PDP+ GEVP A+V     +S T+E++   
Sbjct: 442 IISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEEEIIAH 501

Query: 166 VVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204
             + +A +K  + V F   +PKT++GKI +  L  + +S
Sbjct: 502 CREHLAGFKVPKAVVFG-ELPKTSTGKIQKFVLREQAKS 539

Length = 545

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score =  126 bits (319), Expect = 5e-34
 Identities = 75/204 (36%), Positives = 113/204 (55%), Gaps = 12/204 (5%)

Query: 4   MTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG--PIL 61
           MTET G++    P + ++  GS G+ + G+EA IV  D    LPPN++G L ++   P +
Sbjct: 357 MTETGGIMIANYPAMDIK-PGSMGKPLPGIEAAIV-DDQGNELPPNRMGNLAIKKGWPSM 414

Query: 62  MPGYFNNEQA-TKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           M G +NN +           W  +GD  Y DE G  +   R+ ++IK +G +V P E+E 
Sbjct: 415 MRGIWNNPEKYESYFAG--DWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVES 472

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVV-RS---PNSSLTKEDVQKFVVKQVARYKRL 176
            L+ HP + +A VI  PDP  GE+  A+V  R    P+  L KE+++ FV K +  +   
Sbjct: 473 KLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEEL-KEEIRGFVKKGLGAHAAP 531

Query: 177 RNVTFTNSIPKTTSGKILRRELIA 200
           R + F + +PKT SGKI+RR L A
Sbjct: 532 REIEFKDKLPKTRSGKIMRRVLKA 555

Length = 570

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score =  124 bits (313), Expect = 2e-33
 Identities = 72/207 (34%), Positives = 108/207 (52%), Gaps = 14/207 (6%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR--- 57
           G+G TET   +T+          GS G+   G +  I+  D  K     + GE+ +R   
Sbjct: 332 GFGQTET--TLTIATFPWMEPKPGSMGKPSPGYDIDIIDPDG-KSCEVGEEGEIVIRTSD 388

Query: 58  -GPI-LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAP 115
             P+ L  GY+ + + T  +   +G+ HTGD  + DE G L+ V R  +LIK +G+++ P
Sbjct: 389 GKPLGLFMGYYRDPERTAEVW-HDGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGP 447

Query: 116 AELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRS----PNSSLTKEDVQKFVVKQVA 171
            E+E  L+ HP +L+  V   PDP  G+V  A +V +    P+  L KE +Q  V K  A
Sbjct: 448 FEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVLTKGYEPSEELKKE-LQDHVKKVTA 506

Query: 172 RYKRLRNVTFTNSIPKTTSGKILRREL 198
            YK  R + F + +PKT SGKI R E+
Sbjct: 507 PYKYPRIIEFVDELPKTISGKIRRVEI 533

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  122 bits (309), Expect = 1e-32
 Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 25/195 (12%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTL--KPLPPNQVGELWVRG 58
           GYG+TETC   T+ +P  G   +G  G  +   E ++V V  +          GE+ +RG
Sbjct: 300 GYGLTETCAGGTLSDP--GDTTTGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRG 357

Query: 59  PILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIK-CNGFQVAPAE 117
           P +  GY+ N + T    D++GW HTGD+G +   G L I+DR K L K   G  VA  +
Sbjct: 358 PNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEK 417

Query: 118 LEGVLVSHPEI-------------LDAVVIPFPDPEAGEVPIAYVVRSPNSSL----TKE 160
           LE +  S P +             L A+V+  PD +  E   A                +
Sbjct: 418 LENIYKSSPLVDQICVYGDSLKSFLVAIVV--PDEDVLE-KWAAENGGGGGDFEELCNNK 474

Query: 161 DVQKFVVKQVARYKR 175
            ++K ++K +    +
Sbjct: 475 KLKKAILKDLNEIGK 489

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score =  120 bits (302), Expect = 9e-32
 Identities = 69/204 (33%), Positives = 100/204 (49%), Gaps = 10/204 (4%)

Query: 1   GYGMTETCGVVTVENPLLGVQN-SGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP 59
            +GMTE  G VT+       +  S + G  + GVE ++V  D   PLP  Q+G L VRG 
Sbjct: 343 AWGMTE-NGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDAD-GAPLPAGQIGRLQVRGC 400

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
               GY    Q      D +GW  TGDL   D  G + I  R K++I   G  +   E+E
Sbjct: 401 SNFGGYLKRPQLNG--TDADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIE 458

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFV-VKQVARYKRLRN 178
            +L  HP I    ++ +PD   GE   A+VV  P  SL  E++ +F+  ++VA+      
Sbjct: 459 ALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPER 518

Query: 179 VTFTNSIPKTTSGKI----LRREL 198
           +   +++P+T SGKI    LR  L
Sbjct: 519 LVVRDALPRTPSGKIQKFRLREML 542

Length = 547

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score =  119 bits (300), Expect = 3e-31
 Identities = 64/209 (30%), Positives = 110/209 (52%), Gaps = 19/209 (9%)

Query: 1   GYGMTETC-GVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP 59
           G+ +T  C G+  +          GS G+ V G + Q++  +T + L P ++G + ++ P
Sbjct: 383 GWPITANCVGLELLPIKP------GSPGKPVPGYDVQVLD-ETGEELGPGELGNIVIKLP 435

Query: 60  ILMPG-----YFNNEQATKLIIDK-EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQV 113
            L PG     + ++E+  KL ++K  G+  TGD GY DE G LF++ R  ++I   G ++
Sbjct: 436 -LPPGCLLTLWGDDERFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGHRL 494

Query: 114 APAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVK----Q 169
           +  E+E  ++ HP++ +  V+   D   G+VP+  VV   +  +  + ++  +V     Q
Sbjct: 495 STGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVLKDDCKIDADQLENEIVALVREQ 554

Query: 170 VARYKRLRNVTFTNSIPKTTSGKILRREL 198
           +      RNV F   +PKT SGKILRR L
Sbjct: 555 IGPVAAFRNVVFVKRLPKTRSGKILRRTL 583

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score =  118 bits (296), Expect = 4e-31
 Identities = 73/204 (35%), Positives = 106/204 (51%), Gaps = 15/204 (7%)

Query: 2   YGMTETCGVVTV---------ENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVG 52
           +GMTE    VT          ENP   V ++G  GR   G + +IV  D L PLP   VG
Sbjct: 327 FGMTEATHQVTTTQIEGIGQTENP---VVSTGLVGR-STGAQIRIVGSDGL-PLPAGAVG 381

Query: 53  ELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQ 112
           E+W+RG  ++ GY  +   T      +GWL TGDLG     G L I  RIKELI   G +
Sbjct: 382 EVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEK 440

Query: 113 VAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVAR 172
           ++P  +EGVL SHP +++A V   PD   GE   A +V   ++  T E++ +F  +++A 
Sbjct: 441 ISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEELVQFCRERLAA 500

Query: 173 YKRLRNVTFTNSIPKTTSGKILRR 196
           ++   +    + +P T  G + RR
Sbjct: 501 FEIPASFQEASGLPHTAKGSLDRR 524

Length = 534

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  117 bits (295), Expect = 7e-31
 Identities = 65/197 (32%), Positives = 95/197 (48%), Gaps = 10/197 (5%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG TE   V++V  P+      G+ GR + G+E +IV  +T + LP  + G L VRGP 
Sbjct: 290 GYGATECSPVISVNTPM--GNKPGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPN 347

Query: 61  LMPGYFNNEQATKLI-IDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
           +M GY NNE+ T  + +  +GW  TGD+G  DE G L IV R+K   K  G  V+   +E
Sbjct: 348 VMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVE 407

Query: 120 GVLVSHP--EILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVK-QVARYKRL 176
            +L      + L A V   PD + GE  +          L  E++   + +  +      
Sbjct: 408 ELLSEILPEDSLHAAVE-VPDEKKGEKIVLLTT---TEDLDPEELNAILREAGLPNLAVP 463

Query: 177 RNVTFTNSIPKTTSGKI 193
           R +   + IP   SGK 
Sbjct: 464 RKILHVDEIPLLGSGKT 480

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  114 bits (288), Expect = 7e-30
 Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 14/135 (10%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYGMTE     T+  P  G +  G+ G+ + GVE +I           ++ GE+ +R P 
Sbjct: 305 GYGMTENFAYSTLNYP--GDRRIGTVGKPIPGVELKI-----------SEDGEILIRSPG 351

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIK-CNGFQVAPAELE 119
           LM GY+ + + T     ++GWLHTGD G  DE G L I  R+KEL K   G  VAPA +E
Sbjct: 352 LMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIE 411

Query: 120 GVLVSHPEILDAVVI 134
            +L ++P +    V+
Sbjct: 412 NLLSANPHVEQVCVV 426

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  113 bits (285), Expect = 1e-29
 Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 14/206 (6%)

Query: 2   YGMTETCGVVT-VENPLLGVQNSGSA--GRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG 58
           YG TE    VT  E     +  +     G    G+ A I+  D  +P+PP + GEL + G
Sbjct: 247 YGPTEATVAVTAYEVTPEPLSRNEPLPIGYPKPGLRALILDED-GRPVPPGEEGELVIAG 305

Query: 59  PILMPGYFNNEQATK---LIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAP 115
           P + PGY NN + T       + + W  TGDL Y ++ G L  + R    IK +G+++  
Sbjct: 306 PQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIEL 365

Query: 116 AELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARY-- 173
            E+E  L + P + +AVV+P P  E     +A+VV    +  TK  ++K + K++  Y  
Sbjct: 366 EEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGALDTKA-LKKELKKRLPPYMI 424

Query: 174 -KRLRNVTFTNSIPKTTSGKILRREL 198
            +R   +    S+P   +GKI R+ L
Sbjct: 425 PRRFVYLD---SLPLNANGKIDRKAL 447

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score =  114 bits (286), Expect = 1e-29
 Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 15/208 (7%)

Query: 2   YGMTETCGVVTVENPLLGVQN-SGSA--------GRLVAGVEAQIVCVDTLKPLP--PNQ 50
           +GMTE   + T+           G A        G    GVE +I   D  K LP     
Sbjct: 325 WGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKIT-DDAGKELPWDGKT 383

Query: 51  VGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNG 110
            G L VRGP +   Y+  +     I+D +G+  TGD+   D +G + I DR K++IK  G
Sbjct: 384 FGRLKVRGPAVAAAYYRVDGE---ILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGG 440

Query: 111 FQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQV 170
             ++  +LE + V HP++ +A VI    P+  E P+  V   P  + T+E++ K++  ++
Sbjct: 441 EWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGKI 500

Query: 171 ARYKRLRNVTFTNSIPKTTSGKILRREL 198
           A++    +V F ++IP T +GKIL+  L
Sbjct: 501 AKWWMPDDVAFVDAIPHTATGKILKTAL 528

Length = 542

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  113 bits (285), Expect = 2e-29
 Identities = 73/209 (34%), Positives = 105/209 (50%), Gaps = 16/209 (7%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR-GP 59
           GYG TET   +   N        GS G+     + QI+  D    LPP   G++ +R  P
Sbjct: 322 GYGQTET--GLICANFKGMKIKPGSMGKASPPYDVQII-DDNGNVLPPGTEGDIGIRVKP 378

Query: 60  I----LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAP 115
                L   Y +N + T   I  + ++ TGD G  DE G  + V R  ++I  +G+++ P
Sbjct: 379 TRPFCLFSCYVDNPEKTAATIRGDFYI-TGDRGIMDEDGYFWFVGRADDVINSSGYRIGP 437

Query: 116 AELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN------SSLTKEDVQKFVVKQ 169
            E+E  L+ HP ++++ V+  PDP  GEV  A+VV +P         LTKE +Q+ V   
Sbjct: 438 FEVESALIEHPAVVESAVVSSPDPIRGEVVKAFVVLAPQFLSHDPEQLTKE-LQEHVKSV 496

Query: 170 VARYKRLRNVTFTNSIPKTTSGKILRREL 198
            A YK  R V F   +PKT +GKI R EL
Sbjct: 497 TAPYKYPRKVEFVQELPKTITGKIKRNEL 525

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score =  113 bits (284), Expect = 2e-29
 Identities = 72/207 (34%), Positives = 101/207 (48%), Gaps = 14/207 (6%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG-- 58
           GYG TET  V+ V     G Q  GS GRL  G EA++V     + LP  + GEL +R   
Sbjct: 323 GYGSTETNFVIAVT---HGSQRPGSMGRLAPGFEARVVDEHD-QELPDGEPGELLLRADE 378

Query: 59  PI-LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAE 117
           P     GYF   + T +   +  W HTGD    D  G    VDRIK+ I+  G  ++  E
Sbjct: 379 PFAFATGYFGMPEKT-VEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFE 437

Query: 118 LEGVLVSHPEILDAVVIPFPDPEAG-EVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRL 176
           +E VL+SHP +  A V P P      EV  A V+R   ++L    + +    ++A +   
Sbjct: 438 VEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLR-DGTALEPVALVRHCEPRLAYFAVP 496

Query: 177 RNVTFTNSIPKTTSGKILRRELIAKLR 203
           R V F  ++PKT +GK+ +      LR
Sbjct: 497 RYVEFVAALPKTENGKVQK----FVLR 519

Length = 542

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score =  112 bits (282), Expect = 3e-29
 Identities = 63/180 (35%), Positives = 98/180 (54%), Gaps = 11/180 (6%)

Query: 24  GSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPG--YFNNEQATKLIIDKEGW 81
           G+ G+ V G EA+IV  D    +P  + G L VRGP    G  Y ++E+  + +  ++GW
Sbjct: 313 GATGKPVPGYEARIV-DDQGNEVPRGEAGRLAVRGPT---GCRYLDDERQQEYV--RDGW 366

Query: 82  LHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEA 141
             TGD+   DE G    V R  ++I   G+ +A  E+E  L++HP++ +  VI  PD E 
Sbjct: 367 NVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVPDEER 426

Query: 142 GEVPIAYVVRSPN---SSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
           G++  A++V       + L  E +Q FV   +A YK  R + F +++PKT +GKI R  L
Sbjct: 427 GQIVCAHIVLRDGTKATELLAERLQDFVKAVIAPYKYPREINFVDALPKTQTGKIQRFRL 486

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score =  110 bits (278), Expect = 2e-28
 Identities = 60/179 (33%), Positives = 103/179 (57%), Gaps = 7/179 (3%)

Query: 27  GRLVAGVEAQIVCVDTLKPLPPNQV--GELWVRGPILMPGYFNNEQATKLIIDKEGWLHT 84
           GR++ GV+ +IV  D  + LP +    G+L VRGP ++  YF  + A+ L+   +GW  T
Sbjct: 359 GRVIYGVDMKIVGDDG-RELPWDGKAFGDLQVRGPWVIDRYFRGD-ASPLV---DGWFPT 413

Query: 85  GDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEV 144
           GD+   D  G + I DR K++IK  G  ++  ++E V V+HP + +A  I    P+  E 
Sbjct: 414 GDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDER 473

Query: 145 PIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLR 203
           P+  VV+ P + +T+E++  F   +VA++    +V F ++IP T +GK+ + +L  + R
Sbjct: 474 PLLVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFR 532

Length = 539

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score =  109 bits (275), Expect = 4e-28
 Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 6/174 (3%)

Query: 25  SAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHT 84
           S GR    V+ +I C +  + +   ++G ++V+ P    GY          ++ +GW+  
Sbjct: 308 SVGRPFHNVQVRI-CNEAGEEVQKGEIGTVYVKSPQFFMGYII-GGVLARELNADGWMTV 365

Query: 85  GDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEV 144
            D+GY DE G ++IV R K +I   G  + P E+E VL  HP + + VVI  PD   GE 
Sbjct: 366 RDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEK 425

Query: 145 PIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
           P+A +      S TK+ ++ F +++++ +K  +   F + IP T SGKI R E 
Sbjct: 426 PVAII----KGSATKQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEA 475

Length = 487

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score =  109 bits (275), Expect = 4e-28
 Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 10/205 (4%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           Y  TE  G  T  +    + + G+ GR + G     +  D    LPP + G +W  G   
Sbjct: 307 YAATEGLGF-TACDSEEWLAHPGTVGRAMFGDLH--ILDDDGAELPPGEPGTIWFEGG-R 362

Query: 62  MPGYFNNEQATKLIIDKEG-WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
              Y N+   T      +G W   GD+GY DE G L++ DR   +I   G  + P E E 
Sbjct: 363 PFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAEN 422

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVR----SPNSSLTKEDVQKFVVKQVARYKRL 176
           +L++HP++ DA V   P+ + GE   A V       P  +L  E +  F  ++++R K  
Sbjct: 423 LLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAE-LIAFCRQRLSRQKCP 481

Query: 177 RNVTFTNSIPKTTSGKILRRELIAK 201
           R++ F + +P+  +GK+ +R L  +
Sbjct: 482 RSIDFEDELPRLPTGKLYKRLLRDR 506

Length = 511

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score =  109 bits (274), Expect = 4e-28
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 12/208 (5%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSA--GRLVAGVEAQIVCVDT-LKPLPPNQVGELWVR 57
            YG TET   VT         + GS   GR +A     ++  D  L+P+P    GEL++ 
Sbjct: 240 AYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVYVL--DEDLRPVPVGVPGELYIG 297

Query: 58  GPILMPGYFNNEQATK-------LIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNG 110
           G  +  GY N  + T             E    TGDL  +   G L  + R  + +K  G
Sbjct: 298 GAGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLEFLGRADDQVKIRG 357

Query: 111 FQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQV 170
           +++   E+E  L++HP + +AVV+   D    +  +AYVV +  + L   +++ F+ +++
Sbjct: 358 YRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELDAAELRAFLAERL 417

Query: 171 ARYKRLRNVTFTNSIPKTTSGKILRREL 198
             Y         +++P T +GK+ R+ L
Sbjct: 418 PDYMVPSAFVVLDALPLTPNGKVDRKAL 445

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score =  109 bits (274), Expect = 6e-28
 Identities = 60/220 (27%), Positives = 98/220 (44%), Gaps = 32/220 (14%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQ---------- 50
           G+G TE  GV     P       G+ G L  GV   IV  DT    PP +          
Sbjct: 296 GFGSTEG-GVAITRTP---DTPPGALGPLPPGV--AIVDPDTGTECPPAEDADGRLLNAD 349

Query: 51  --VGELW-VRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIK 107
             +GEL    GP    GY+N+ +A    + + G   +GDL Y D  G  +   R+ + ++
Sbjct: 350 EAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGRLGDWMR 408

Query: 108 CNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVV 167
            +G  +  A +E +L+ +P+  +  V   PDP  G+  +A +V +P +    +   +F+ 
Sbjct: 409 VDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLA 468

Query: 168 -------KQVARYKRLRNVTFTNSIPKTTSGKILRRELIA 200
                  KQ   Y R+        +P+T + K+L+R+L A
Sbjct: 469 AQPDLGPKQWPSYVRV-----CAELPRTATFKVLKRQLSA 503

Length = 529

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  107 bits (270), Expect = 1e-27
 Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 9/201 (4%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR---- 57
           YG TET   V   + L     +GS G  + G     V  D  +PL   + G+L +     
Sbjct: 237 YGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRI-AVLDDDGQPLADGEPGQLAIDVASS 295

Query: 58  GPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAE 117
             +   GY+++ + T  +I    W  TGDL   DE G  + + R  ++I   G+++ P +
Sbjct: 296 PLLWFSGYWDDPEKTAELIA-GRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFD 354

Query: 118 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN---SSLTKEDVQKFVVKQVARYK 174
           +E  L+ HP + +A V+  PDP  GE+  A+VV       S    E++Q FV K+++ + 
Sbjct: 355 VESALLEHPAVAEAAVVGVPDPLRGEIVKAFVVLKEGYAGSDELAEELQLFVKKRLSAHA 414

Query: 175 RLRNVTFTNSIPKTTSGKILR 195
             R V F  ++PKT SGKI R
Sbjct: 415 YPREVEFVPALPKTPSGKIQR 435

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  107 bits (270), Expect = 2e-27
 Identities = 63/242 (26%), Positives = 95/242 (39%), Gaps = 46/242 (19%)

Query: 1   GYGMTETCGVVTVEN-----PLLGVQNSGSA--------------------GRLVAGVEA 35
            +GM+ETC  VT        P  G     S                     GR + GV  
Sbjct: 326 AFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAI 385

Query: 36  QIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQ 95
           +IV  +    LP  +VG L VRGP +  GY+ N +A      ++GW  TGDLG+    G+
Sbjct: 386 RIV-DEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLH-DGR 443

Query: 96  LFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAG----EVPIAYVVR 151
           L I  R K++I  NG      E+E  +   P +  +        +AG    E+ + +V R
Sbjct: 444 LTITGREKDMIIINGVNYYNHEIEAAVEQVPGVEPSFTAACAVRDAGSGTDELAVFFVPR 503

Query: 152 SPNSSLTKEDVQKFVVKQVARYKRLRNVTFT---------NSIPKTTSGKILRRELIAKL 202
                    D    +++ + R    R +               PKT+ GKI R +L  + 
Sbjct: 504 YDLD-----DRLAALLRAI-RTHVARKIGIAPAYVIPLAKEDFPKTSLGKIQRAQLRKRF 557

Query: 203 RS 204
            +
Sbjct: 558 EA 559

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score =  107 bits (269), Expect = 3e-27
 Identities = 72/241 (29%), Positives = 113/241 (46%), Gaps = 41/241 (17%)

Query: 2   YGMTETCG--------VVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLP------ 47
           YGMTE C           T+E+P   +Q            + Q VCV   KP P      
Sbjct: 321 YGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVH-QPQGVCVG--KPAPHVELKI 377

Query: 48  ----PNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIK 103
                ++VG +  RGP +M GY+     T  ++  +GWL TGD+G+ D+ G L+++ R  
Sbjct: 378 GLDESSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSN 437

Query: 104 ELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYV----------VRSP 153
           + IK  G  V P E+E VL  HP +   VV+  PD    E+ +A V              
Sbjct: 438 DRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKE 497

Query: 154 NSS----LTKEDVQKFVVKQ-VARYKRLRN-VTFTNSIPKTTSGKI----LRRELIAKLR 203
           N+     L+ E ++    ++ ++R+K  +  V +    P TT+GKI    +RRE+++ L+
Sbjct: 498 NAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVLSHLQ 557

Query: 204 S 204
           S
Sbjct: 558 S 558

Length = 563

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score =  106 bits (268), Expect = 5e-27
 Identities = 70/206 (33%), Positives = 102/206 (49%), Gaps = 16/206 (7%)

Query: 4   MTETCG-VVTVENPLLGV--QNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP- 59
            TET G ++T   PL G      GSA R   GVE  IV  +    +     G L ++ P 
Sbjct: 384 QTETGGHMIT---PLPGATPLKPGSATRPFPGVEPAIVDEEG-NEVEGGVEGYLVIKRPW 439

Query: 60  --ILMPGYFNNEQATKLIIDK-EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
             +L   Y ++E+  K    K  G+  TGD    DE G  +I+ R+ ++I  +G ++  A
Sbjct: 440 PGMLRTIYGDHERYVKTYFSKFPGYYFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTA 499

Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV----RSPNSSLTKEDVQKFVVKQVAR 172
           E+E  LVSHP + +A V+  PD   GE   A+V       P+  L KE ++K V K++  
Sbjct: 500 EVESALVSHPAVAEAAVVGKPDEVKGEAIYAFVTLKDGVEPSDELRKE-LKKHVRKEIGP 558

Query: 173 YKRLRNVTFTNSIPKTTSGKILRREL 198
                 + F   +PKT SGKI+RR L
Sbjct: 559 IATPDEIIFVPGLPKTRSGKIMRRIL 584

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score =  105 bits (264), Expect = 9e-27
 Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 6/198 (3%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG TE  G+  +  P        + G+ VAG   +I+  +  +P+ P   G ++V G +
Sbjct: 323 GYGSTEV-GIGALATPADLRDAPETVGKPVAGCPVRILDRNN-RPVGPRVTGRIFVGGEL 380

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
               Y   +   K ++D  G   TGD+GY D  G+LFIV R  ++I   G  V P  +E 
Sbjct: 381 AGTRY--TDGGGKAVVD--GMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVEN 436

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
            L +HP + D  VI  PD   G    A+VV  P S +    ++ ++  +V+R+++ R++ 
Sbjct: 437 ALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDIN 496

Query: 181 FTNSIPKTTSGKILRREL 198
             +SIP+  +GK+LR+EL
Sbjct: 497 IVSSIPRNPTGKVLRKEL 514

Length = 516

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score =  104 bits (261), Expect = 3e-26
 Identities = 60/199 (30%), Positives = 93/199 (46%), Gaps = 6/199 (3%)

Query: 2   YGMTETCGVVTVENPLLGVQNSG-SAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           +GMTE  G VTV  P   ++ +  + GR + GVE +++  +    L   + G L VRG  
Sbjct: 342 WGMTE-NGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANG-AKLSQGETGRLLVRGCS 399

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
              GY           D EGW  TGDL + D  G + I  R K++I   G  +   E+E 
Sbjct: 400 NFGGYLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIEN 457

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFV-VKQVARYKRLRNV 179
           +L  HP +    ++ +PD   GE   A VV  P  +L    +  F+  ++VA       +
Sbjct: 458 LLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPERL 517

Query: 180 TFTNSIPKTTSGKILRREL 198
              +++P T +GKI +  L
Sbjct: 518 EVVDALPATPAGKIQKFRL 536

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  104 bits (261), Expect = 5e-26
 Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 10/131 (7%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVD----TLKPLPPNQVGELWV 56
           G+G+TET     ++    G     + G+L+ GVE +++  +    T  P P    GE+ +
Sbjct: 458 GWGLTETVCCGGIQ--RTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPR---GEILL 512

Query: 57  RGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIK-CNGFQVAP 115
           RGP L  GY+  E+ T+ ++D++GW HTGD+G    +G L I+ R+K L K C G  +A 
Sbjct: 513 RGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIAL 572

Query: 116 AELEGVLVSHP 126
             LE +   + 
Sbjct: 573 EALEALYGQNE 583

Length = 700

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score =  103 bits (258), Expect = 9e-26
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 27/226 (11%)

Query: 1   GYGMTETCGVVTV-----------ENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPN 49
            YG+TE  G V             EN  + ++       ++   +  +   +T + +P +
Sbjct: 330 AYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGV-SILGLADVDVKNKETQESVPRD 388

Query: 50  --QVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIK 107
              +GE+ ++G  +M GY  N +AT     K GWL+TGD+G     G + I DR K++I 
Sbjct: 389 GKTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIII 447

Query: 108 CNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVV 167
             G  ++  E+E VL  +P++L+  V+  P P  GE P A+VV     +  ++ V K V 
Sbjct: 448 SGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVT 507

Query: 168 KQ--VARYKRL--------RNVTFTNSIPKTTSGKILRREL--IAK 201
           ++  +  Y R         R V F   +PK  +GKIL+ +L  IAK
Sbjct: 508 RERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAK 553

Length = 579

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score =  101 bits (254), Expect = 3e-25
 Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 19/219 (8%)

Query: 2   YGMTETCGVVTV--------ENPLL--GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPN-- 49
           YG++ET G  TV          P       N+    R +      +V   T+KP+P +  
Sbjct: 341 YGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGK 400

Query: 50  QVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCN 109
            +GE+ +RG ++M GY  N +A +      GW H+GDLG     G + I DR K++I   
Sbjct: 401 TMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISG 459

Query: 110 GFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYV-----VRSPNSSLTKEDVQK 164
           G  ++  E+E V+ +HP +L+A V+  PD   GE P A+V     V   + +   ED+ K
Sbjct: 460 GENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMK 519

Query: 165 FVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLR 203
           F  +++  Y   ++V F   +PKT +GKI +  L AK +
Sbjct: 520 FCRERLPAYWVPKSVVF-GPLPKTATGKIQKHVLRAKAK 557

Length = 567

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score =  101 bits (253), Expect = 5e-25
 Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 29/229 (12%)

Query: 2   YGMTETCGVVTVENPLLGVQNSG------SAGRLVAGVEAQIVCVDTLKPLPPNQVGELW 55
           +GMTET  V TV  P  GV          S GR  A +E +IV    +        GE+ 
Sbjct: 330 WGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVNDGQVMESTDRNEGEIQ 389

Query: 56  VRGPILMPGYFN------------------NEQATKLIIDKEGWLHTGDLGYFDEHGQLF 97
           VRG  +   Y++                   +   +   D  GWL TGD+G     G L 
Sbjct: 390 VRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTAD--GWLRTGDVGSVTRDGFLT 447

Query: 98  IVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL 157
           I DR +++I+  G  +  A+LE  +++ PE+++  VI +PD + GE P+A  V +P    
Sbjct: 448 IHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEP 507

Query: 158 TKEDVQKF---VVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLR 203
           T+E  ++    +  ++  +      TF + I KT+ GK  +++L   L 
Sbjct: 508 TRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQHLA 556

Length = 576

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score =  100 bits (252), Expect = 7e-25
 Identities = 60/218 (27%), Positives = 93/218 (42%), Gaps = 27/218 (12%)

Query: 1   GYGMTETCGVVTVEN--PLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQ-------- 50
           GYG +E   +V  E   P       GS GR   GV   I   +TL      +        
Sbjct: 294 GYGSSEGAVIVVREPGTP------PGSIGRGAPGVA--IYNPETLTECAVARFDAHGALL 345

Query: 51  -----VGELWVR-GPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKE 104
                +GEL    G     GY+NN +AT   + + G   +GDL Y D  G ++   R  +
Sbjct: 346 NADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTAD 404

Query: 105 LIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQK 164
            ++ +G  ++ A +E +L+ HP I    V   PD   G+  +A +V    ++   +    
Sbjct: 405 WMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAA 464

Query: 165 FVVKQ--VARYKRLRNVTFTNSIPKTTSGKILRRELIA 200
           F+  Q  +      R V     +P T + K+L+RELIA
Sbjct: 465 FLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIA 502

Length = 540

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score =  100 bits (251), Expect = 9e-25
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 13/176 (7%)

Query: 27  GRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGD 86
           G+ + G E +I       PLP   VG + VRGP LM GYF +E++   ++  +GWL TGD
Sbjct: 388 GKALPGHEIEIRNEAG-MPLPERVVGHICVRGPSLMSGYFRDEESQD-VLAADGWLDTGD 445

Query: 87  LGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPI 146
           LGY  + G L+I  R K+LI  NG  + P ++E +    PE+       F   +     I
Sbjct: 446 LGYLLD-GYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENGEKI 504

Query: 147 AYVVRSPNSSLTKEDVQKFVVKQVARYKRLR---NVTFT----NSIPKTTSGKILR 195
             +V+   S    E+ +  ++  +A   R              +S+P+T+SGK+ R
Sbjct: 505 VLLVQCRISD---EERRGQLIHALAALVRSEFGVEAAVELVPPHSLPRTSSGKLSR 557

Length = 579

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  100 bits (250), Expect = 1e-24
 Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 2/162 (1%)

Query: 45  PLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKE 104
           P+ P +VGEL  RGP  + GY+   +      D +G+  +GDL   D  G L +  R+K+
Sbjct: 379 PVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKD 438

Query: 105 LIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQK 164
            I   G ++A  E+E +L+ HP + DA ++  PD   GE   A++V      L    +++
Sbjct: 439 QINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIV-VKEPPLRAAQLRR 497

Query: 165 FVVKQ-VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205
           F+ ++ +A +K    + F +S+P T  GKI ++ L  +L S+
Sbjct: 498 FLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASR 539

Length = 542

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 99.4 bits (248), Expect = 2e-24
 Identities = 58/202 (28%), Positives = 92/202 (45%), Gaps = 6/202 (2%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKP--LPPNQVGELWVRGP 59
           YG +E   +V ++     V      G   A  EA++   D      LP  + GE+ +R P
Sbjct: 326 YGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAP 385

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
            LM GY +N  AT   +  +G+  TGDLGY    GQ     R+ + ++  GF V PAE+E
Sbjct: 386 SLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIE 445

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNV 179
             L + P +  A V+     +   VP+A+V+ +  +S  +  +     + +A +K    V
Sbjct: 446 HALEALPGVAAAQVVGA-TRDGKTVPVAFVIPTDGASPDEAGLMAACREALAGFKVPARV 504

Query: 180 TFTNSIPKTTSG---KILRREL 198
               + P T S    KI +  L
Sbjct: 505 QVVEAFPVTESANGAKIQKHRL 526

Length = 540

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 99.6 bits (249), Expect = 2e-24
 Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 15/208 (7%)

Query: 2   YGMTETCGVVTVENPLLGVQNS--GSAGRLVAGVEAQIVCVDTLKPLP-PNQVGELWVRG 58
           +  TET G++    PL G   +  GSA     G+E  +V  +   P+  P + G L ++ 
Sbjct: 393 WWQTETGGIMI--TPLPGATPTKPGSATLPFFGIEPAVV-DEEGNPVEGPGEGGYLVIKQ 449

Query: 59  --PILMPGYFNNEQATKLIIDK--EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVA 114
             P ++   + + +           G+  TGD    D+ G ++I  R+ ++I  +G ++ 
Sbjct: 450 PWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLG 509

Query: 115 PAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV----RSPNSSLTKEDVQKFVVKQV 170
            AE+E  LVSHP + +A V+  PD   G+   A+V       P+  L KE ++K V K++
Sbjct: 510 TAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKE-LRKHVRKEI 568

Query: 171 ARYKRLRNVTFTNSIPKTTSGKILRREL 198
               +   + F   +PKT SGKI+RR L
Sbjct: 569 GPIAKPDKIRFVPGLPKTRSGKIMRRLL 596

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 99.0 bits (247), Expect = 3e-24
 Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
            YGM+ET G  TV NP        S G+ + G E +I   D       + +GE+ + G  
Sbjct: 348 LYGMSETSGPHTVSNP--QNYRLLSCGKALPGCETKIHNPDA------DGIGEICIWGRH 399

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQ-VAPAELE 119
           +  GY N E+ T+  ID++GWLH+GDLG+ D+ G L+I  RIKELI   G + V P  +E
Sbjct: 400 VFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIE 459

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 98.5 bits (246), Expect = 4e-24
 Identities = 63/240 (26%), Positives = 94/240 (39%), Gaps = 54/240 (22%)

Query: 1   GYGMTETCGVVT-----------------------VENPLLGVQNSGS---AGRLVAGVE 34
            YG+ E    V+                       +        ++ S    G  + G E
Sbjct: 265 VYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIEIDPKNSDAISFVEVGSPIDGCE 324

Query: 35  AQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHG 94
            +I   D  + LP   +G + ++G  +  GY+NN +ATK  I  +GWL TGDLG F  +G
Sbjct: 325 IRI-VDDAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLG-FLRNG 382

Query: 95  QLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN 154
           +L I  R K++I  NG    P ++E V      I           + G V    V     
Sbjct: 383 RLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGI-----------KLGRVAACGVYDEKE 431

Query: 155 SS-------LTKEDVQKFV-----VKQVARYKR---LRNVTFTNSIPKTTSGKILRRELI 199
            S         ++ +  F      +K+    K    + +V    SIPKTTSGKI R +L 
Sbjct: 432 QSEEVVIFVEYRQSLDDFTPLALKIKRHVNKKMGLNIDHVIPVRSIPKTTSGKIQRYKLA 491

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 97.3 bits (243), Expect = 8e-24
 Identities = 65/202 (32%), Positives = 98/202 (48%), Gaps = 12/202 (5%)

Query: 3   GMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI-- 60
           G TE  G +    P+  ++     G    G++A +V  D  +P+   +VGEL VR P   
Sbjct: 257 GGTEISGGILGNVPIRPIKPCSFNG-PSPGMDADVVDEDG-RPVRG-EVGELVVRAPWPG 313

Query: 61  LMPGYFNNEQ---ATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAE 117
           +  G++ + +    T        W+H GD    DE G  +I+ R  + IK  G +V PAE
Sbjct: 314 MTRGFWRDPERYLETYWSRFPGVWVH-GDWALVDEDGYWYILGRSDDTIKVAGKRVGPAE 372

Query: 118 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQ---KFVVKQVARYK 174
           +E VL SHP + +A  I  PDP  GE  + +VV  P  + +          V   + +  
Sbjct: 373 IESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVLKPGVTPSAALEAELADHVGDALGKPF 432

Query: 175 RLRNVTFTNSIPKTTSGKILRR 196
           R R V F + +PKT +GKI+RR
Sbjct: 433 RPREVHFVSDLPKTRNGKIMRR 454

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 96.4 bits (240), Expect = 2e-23
 Identities = 52/178 (29%), Positives = 92/178 (51%), Gaps = 5/178 (2%)

Query: 24  GSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLH 83
           G++G+ V G   ++V  D  + +   + GEL + GP     Y+NN   T+     E W  
Sbjct: 330 GTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGE-WTR 387

Query: 84  TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGE 143
           +GD    ++ G      R  +++K +G  V+P E+E  L+ HP +L+A V+   D +   
Sbjct: 388 SGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLI 447

Query: 144 VPIAYVVRSPN---SSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
            P A++V  P     +  + ++++ V  ++A YK  R + F + +PKT +GKI R +L
Sbjct: 448 KPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKL 505

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 96.4 bits (240), Expect = 2e-23
 Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 4/157 (2%)

Query: 44  KPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIK 103
            P+ P + G L  RGP    GY+   +      D EG+ +TGDL      G + +V R K
Sbjct: 371 NPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAK 430

Query: 104 ELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAY-VVRSPNSSLTKEDV 162
           + I   G ++A  E+E +L++HP + DA ++  PD   GE   A+ VVR P   L    +
Sbjct: 431 DQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPA--LKAAQL 488

Query: 163 QKFVVKQ-VARYKRLRNVTFTNSIPKTTSGKILRREL 198
           ++F+ ++ +A YK    V F +S+P T  GK+ ++ L
Sbjct: 489 RRFLRERGLAEYKLPDRVEFVDSLPLTAVGKVDKKAL 525

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 95.7 bits (239), Expect = 4e-23
 Identities = 59/210 (28%), Positives = 94/210 (44%), Gaps = 19/210 (9%)

Query: 1   GYGMTE-----TCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELW 55
           GYG TE     TC V+T    L    +S   GR +      I+  +  +P+P    GEL+
Sbjct: 272 GYGPTENTTFSTCHVIT---RLDEAADSIPIGRPIPNTTVYIL-DEEGQPVPIGVPGELY 327

Query: 56  VRGPILMPGYFNNEQATKL----IIDKEG--WLHTGDLGYFDEHGQLFIVDRIKELIKCN 109
           V G  L  GY N  + T           G     TGDL  +   G +  + RI   +K  
Sbjct: 328 VGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKIR 387

Query: 110 GFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPI-AYVVRSPNSSLTKEDVQKFVVK 168
           GF++   E+E  L+ HP + +A V+   +  AG+  + AYVV     +L   +++  + +
Sbjct: 388 GFRIELGEIEQALLQHPGVREAAVLV-REDAAGDKRLVAYVV--ARGALDAAELRAHLAE 444

Query: 169 QVARYKRLRNVTFTNSIPKTTSGKILRREL 198
           ++  Y         + +P T +GK+ RR L
Sbjct: 445 RLPAYMVPAAFVVLDELPLTANGKVDRRAL 474

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 95.2 bits (237), Expect = 7e-23
 Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 13/208 (6%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           YG+TE      +    +  +   S G+ +   E  ++  D  +  P  + GEL  RG ++
Sbjct: 309 YGLTEAFRSTYLPPEEVD-RRPDSIGKAIPNAEVLVLREDGSECAP-GEEGELVHRGALV 366

Query: 62  MPGYFNNEQATKLIIDK----EGWLH-------TGDLGYFDEHGQLFIVDRIKELIKCNG 110
             GY+N+ + T           G LH       +GD    DE G L+ V R  E+IK +G
Sbjct: 367 AMGYWNDPEKTAERFRPLPPFPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSG 426

Query: 111 FQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQV 170
           ++V+P E+E V  +   + +AV    PDP  G+  +  V       L +  +      ++
Sbjct: 427 YRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELDRAALLAECRARL 486

Query: 171 ARYKRLRNVTFTNSIPKTTSGKILRREL 198
             Y     +    ++P+  +GKI R+ L
Sbjct: 487 PNYMVPALIHVRQALPRNANGKIDRKAL 514

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 94.9 bits (236), Expect = 7e-23
 Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 10/201 (4%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCV--DTLKPLPPNQVGELWV-RG 58
           YG TE    + + +P      +G+  R     E +IV +     + LP  + GEL V   
Sbjct: 301 YGTTEAMNSLYMRDP-----RTGTEMRPGFFSEVRIVRIGGSPDEALPNGEEGELVVAAA 355

Query: 59  PILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAEL 118
                GY N  QAT   + ++GW  T D+   D  G + I+ R+ ++I   G  + P+E+
Sbjct: 356 DATFTGYLNQPQATAEKL-QDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEV 414

Query: 119 EGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVV-KQVARYKRLR 177
           E VL   P + + VVI  PD   G+   A VV     +L+ + +  F    ++A +KR R
Sbjct: 415 ERVLGRAPGVTEVVVIGLPDERWGQSVTACVVPREGETLSADALDTFCRASELADFKRPR 474

Query: 178 NVTFTNSIPKTTSGKILRREL 198
              F + +PK    K+LRR+L
Sbjct: 475 RYFFLDELPKNAMNKVLRRQL 495

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 93.8 bits (234), Expect = 2e-22
 Identities = 61/213 (28%), Positives = 92/213 (43%), Gaps = 29/213 (13%)

Query: 1    GYGMTETCGVVTV--------ENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVG 52
            GYG TET  V +V        +         GS G  + GV  +IV  +T + LPP + G
Sbjct: 929  GYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDG 988

Query: 53   ELWVRGPILMPGYFNNEQATKLII---DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCN 109
             + + GP +M GY  + + T  +I   D  GW  TGD G+ DE G L I DR     K  
Sbjct: 989  LILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG 1048

Query: 110  GFQVAPAELEGVL--VSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVV 167
            G  V    +E  L      E +   V   PD + GE     VV     +   E++++ + 
Sbjct: 1049 GEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGE---KLVVLHTCGAEDVEELKRAIK 1105

Query: 168  K-------QVARYKRLRNVTFTNSIPKTTSGKI 193
            +       + +RY ++       ++P   SGK+
Sbjct: 1106 ESGLPNLWKPSRYFKV------EALPLLGSGKL 1132

Length = 1146

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 93.1 bits (232), Expect = 3e-22
 Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 18/213 (8%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
            YG TE   V    + L   +   + GR +      ++  D    +P   VGEL + GP 
Sbjct: 237 TYGPTEAT-VTATASRLTPGKPV-NIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPG 294

Query: 61  LMPGYFNNEQAT--KLIIDKEGWL-------HTGDLGYFDEHGQLFIVDRIKELIKCNGF 111
           +  GY N  + T  K I D             TGDL  + E G L  + R  + +K  G 
Sbjct: 295 VARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQ 354

Query: 112 QVAPAELEGVLVSHPEIL-DAVVIPFPDPEAGEVPIAYVV-----RSPNSSLTKEDVQKF 165
           ++   E+E VL + P ++  AVV+   DP  G+  +A++          + +    ++  
Sbjct: 355 RIELGEIEAVLRALPGVVVAAVVLLLDDPG-GKQLVAFLAVDGAAGGEPADVDIALLRSA 413

Query: 166 VVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
           + +++  Y         + +P T SGK+ R+ L
Sbjct: 414 LRERLPSYMVPSVYVPLDELPLTASGKVDRKAL 446

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 92.8 bits (230), Expect = 4e-22
 Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 12/204 (5%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           Y  TE  G+  +++P   + + GS GR V G     +C D    LP  ++G ++     L
Sbjct: 302 YSSTEAHGMTFIDSPDW-LAHPGSVGRSVLGDLH--ICDDDGNELPAGRIGTVYFERDRL 358

Query: 62  MPGYFNNEQATKLIIDKEG--WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
              Y N+ + T          W   GDLG  DE G L++ DR   +I   G  + P E E
Sbjct: 359 PFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETE 418

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYV-----VRSPNSSLTKEDVQKFVVKQVARYK 174
             L  HP + D  VI  PDPE GE   A +     +R  +  L +E +  +   ++A YK
Sbjct: 419 NALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIR-GSDELARELID-YTRSRIAHYK 476

Query: 175 RLRNVTFTNSIPKTTSGKILRREL 198
             R+V F + +P+T +GK+++  L
Sbjct: 477 APRSVEFVDELPRTPTGKLVKGLL 500

Length = 501

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 91.2 bits (227), Expect = 1e-21
 Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 12/144 (8%)

Query: 1   GYGMTETCGVVTVEN---PLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR 57
            YG TET    T           ++    GR +A      V  D L+P+P   VGEL++ 
Sbjct: 267 LYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRL-YVLDDDLRPVPVGVVGELYIG 325

Query: 58  GPILMPGYFNNEQAT--KLIID------KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCN 109
           GP +  GY N  + T  + + D            TGDL  +   G L  + RI + +K  
Sbjct: 326 GPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIR 385

Query: 110 GFQVAPAELEGVLVSHPEILDAVV 133
           G+++   E+E  L+ HP + +AVV
Sbjct: 386 GYRIELGEIEAALLRHPGVREAVV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 91.5 bits (228), Expect = 1e-21
 Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 24/177 (13%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSA--GRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG 58
           GYG+TE    V         +  G A  G  + G E ++V             GE+W+RG
Sbjct: 270 GYGLTEMASTVCA------KRADGLAGVGSPLPGREVKLVD------------GEIWLRG 311

Query: 59  PILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAEL 118
             L  GY+   Q   L+ + EGW  T D G +   G+L I+ R+  L    G  + P E+
Sbjct: 312 ASLALGYWRQGQLVPLV-NDEGWFATRDRGEWQN-GELTILGRLDNLFFSGGEGIQPEEI 369

Query: 119 EGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKR 175
           E V+  HP +    V+P  D E G+ P+A VV S +S     ++ +++  ++AR+++
Sbjct: 370 ERVINQHPLVQQVFVVPVADAEFGQRPVA-VVES-DSEAAVVNLAEWLQDKLARFQQ 424

Length = 458

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 91.6 bits (228), Expect = 1e-21
 Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 5/165 (3%)

Query: 44  KPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIK 103
            PLP  +VG L  RGP    GY+ + Q      D  G+  +GDL   D  G + +V R K
Sbjct: 373 NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREK 432

Query: 104 ELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAY-VVRSPNSSLTKEDV 162
           + I   G ++A  E+E +L+ HP ++ A ++   D   GE   A+ VV+ P  ++    +
Sbjct: 433 DQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPLKAVQ---L 489

Query: 163 QKFVVKQ-VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI 206
           ++F+ +Q +A +K    V   +S+P T  GK+ +++L   L S+ 
Sbjct: 490 RRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 534

Length = 536

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 91.7 bits (229), Expect = 1e-21
 Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 38/221 (17%)

Query: 4   MTETCGVVTVENPLLGVQNS--GSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
            TET G++    PL G      GSA R + G++  +V  +   PL   + G L ++ P  
Sbjct: 404 QTETGGIMI--TPLPGATPLKPGSATRPLPGIQPAVV-DEEGNPLEGGEGGNLVIKDP-- 458

Query: 62  MPG---------------YFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELI 106
            PG               YF+           +G   TGD    DE G  +I  R+ +++
Sbjct: 459 WPGMMRTIYGDHERFVKTYFSTF---------KGMYFTGDGARRDEDGYYWITGRVDDVL 509

Query: 107 KCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV----RSPNSSLTKEDV 162
             +G ++  AE+E  LV+HP++ +A V+  PD   G+   A+V       P+  L KE +
Sbjct: 510 NVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKE-L 568

Query: 163 QKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL--IAK 201
           + +V K++    +   + F   +PKT SGKI+RR L  IA+
Sbjct: 569 RNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAE 609

Length = 637

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 89.7 bits (223), Expect = 4e-21
 Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 18/198 (9%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           YGMTET   +    P   +  + S+G+++   +  I           NQ G + ++   L
Sbjct: 261 YGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA---------NQTGNITIQAQSL 311

Query: 62  MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGV 121
             GY+        I+D +G   T DLGY D  G L I+ R  + I   G  V PAE+E  
Sbjct: 312 ALGYYPQ------ILDSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAA 365

Query: 122 LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN-SSLTKEDVQKFVVKQVARYKRLRNVT 180
           +++   + D  V+  PDP  GEV  A  V  P   S++ E+++  +  Q++ +K+ ++  
Sbjct: 366 ILATGLVQDVCVLGLPDPHWGEVVTAIYV--PKDPSISLEELKTAIKDQLSPFKQPKHWI 423

Query: 181 FTNSIPKTTSGKILRREL 198
               +P+   GKI R++L
Sbjct: 424 PVPQLPRNPQGKINRQQL 441

Length = 452

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 89.8 bits (222), Expect = 5e-21
 Identities = 46/147 (31%), Positives = 82/147 (55%), Gaps = 3/147 (2%)

Query: 56  VRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAP 115
           ++GP +  GY+ NE+AT+  +  +G+  TGD+  +DE G + I DR+K+LIK  G  ++ 
Sbjct: 365 LKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISS 424

Query: 116 AELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKR 175
            +LE  L+ HP++ +A V+  P P+  E P+A  V       T E++ + ++K      +
Sbjct: 425 VDLENALMGHPKVKEAAVVAIPHPKWQERPLAV-VVPRGEKPTPEELNEHLLKAGFAKWQ 483

Query: 176 L-RNVTFTNSIPKTTSGKILRRELIAK 201
           L     F   IP+T++GK   +  + +
Sbjct: 484 LPDAYVFAEEIPRTSAGKF-LKRALRE 509

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 87.6 bits (218), Expect = 2e-20
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 33/216 (15%)

Query: 2   YGMTET------------CGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPN 49
           YG TET             G VT+  P+   Q        V  ++        L+P+PP 
Sbjct: 237 YGPTETTIWSTCARVTAADGPVTIGRPIANTQ--------VYVLDED------LQPVPPG 282

Query: 50  QVGELWVRGPILMPGYFNNEQAT--KLIIDKEG-----WLHTGDLGYFDEHGQLFIVDRI 102
             GEL++ G  +  GY    + T  + + D           TGDL  +   G+L  + R 
Sbjct: 283 VPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRA 342

Query: 103 KELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDV 162
            + +K  GF++   E+E  L +HP + DAVV+   +    +  +AYVV    ++   E +
Sbjct: 343 DDQVKIRGFRIELGEIEAALRAHPGVADAVVVVREEGPGDQRLVAYVVPKAGAAPDAEAL 402

Query: 163 QKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
           +  +   +  Y         + +P T +GK+ R+ L
Sbjct: 403 RAALRATLPAYMVPAAFVQLDELPLTPNGKVDRKAL 438

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 87.5 bits (217), Expect = 3e-20
 Identities = 50/128 (39%), Positives = 73/128 (57%), Gaps = 12/128 (9%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTL------KPLPPNQVGEL 54
           GYGMTET  V++  +   G   SG  G      E ++V V  +      +P P    GE+
Sbjct: 407 GYGMTETSCVISGMDE--GDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPR---GEI 461

Query: 55  WVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIK-CNGFQV 113
            VRGPI+  GY+ +E  T+ +ID++GWLHTGD+G +   G+L I+DR K + K   G  +
Sbjct: 462 CVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYI 521

Query: 114 APAELEGV 121
           AP ++E V
Sbjct: 522 APEKIENV 529

Length = 651

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 86.9 bits (216), Expect = 4e-20
 Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 5/162 (3%)

Query: 41  DTLKPLPPNQVGELWVRGPILMPGYFNNEQAT--KLIIDKEG--WLHTGDLGYFDEHGQL 96
           +  +  P    GEL++ G  +  GY+ + + T  + I  + G     TGDLG +   G +
Sbjct: 316 EDGRDCPDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTI 375

Query: 97  FIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS 156
             + R    +K  G++V   E+E  L  HP +  AVV+   D  A  +  A+VV    ++
Sbjct: 376 EFLGRADHQVKIRGYRVELGEIEAALARHPGVQRAVVVVVGDGGAKAL-AAFVVAEDGAA 434

Query: 157 LTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
           +    ++  + + +  Y         +++P T +GK+ R+ L
Sbjct: 435 VDAAVLRAALAELLPAYMVPSRFVVLDALPLTANGKVDRKAL 476

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 85.0 bits (211), Expect = 2e-19
 Identities = 66/214 (30%), Positives = 90/214 (42%), Gaps = 47/214 (21%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQV-----GELW 55
           GYG++E   VV++  P  G    GS G                KPLP  QV     GE+ 
Sbjct: 267 GYGLSECASVVSLNTP--GADRPGSVG----------------KPLPHVQVSIANDGEIL 308

Query: 56  VRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKEL-IKCNGFQVA 114
           VRG  LM GY     AT      + W  TGDLG+ DE G L+I  R K L I   G  V+
Sbjct: 309 VRGS-LMLGYLGEPPAT------DDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVS 361

Query: 115 PAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVAR-- 172
           P  +E  L   P I  AVV  F D +    P    +  P  +++ + ++   V+Q+    
Sbjct: 362 PEWVESELQQAPAIAQAVV--FGDAQ----PFLVALIVPAPNISDDQLEA-AVQQINAQL 414

Query: 173 --YKRLRNVTFTNSIPKTTSGKI-----LRRELI 199
             Y R++          T +G +      RR  I
Sbjct: 415 PDYARIKTWVRLRQPFSTANGLLTANGRPRRAAI 448

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 83.9 bits (208), Expect = 4e-19
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 82  LHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEA 141
           + T DLGY  E G L  + R+ ++I  +G  V P E+E V++  P + +AVV    DP A
Sbjct: 293 IFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVA 352

Query: 142 GE-VPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
           GE V    +       +    ++++ ++ +A Y+    +     IPK  +GK+ R+ L
Sbjct: 353 GERVKAKVISHEE---IDPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLL 407

Length = 414

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 83.6 bits (207), Expect = 8e-19
 Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 14/171 (8%)

Query: 44  KPLPPNQVGELWVRGPILMPG-----YFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFI 98
           K L  N++GE+  + P + P      Y N+E+  +L     G+ ++GDLG+ DE+G   I
Sbjct: 452 KELNVNEIGEVAFKLP-MPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTI 510

Query: 99  VDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV-----RSP 153
           V R  + IK +G +V    +E  ++ HP +L+   I   DP+   VPI  +V      + 
Sbjct: 511 VSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQ 570

Query: 154 NSSLT--KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKL 202
           +  L   K ++   + + +     LR +   N +PKT +GKI  R++I+K 
Sbjct: 571 SIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKI-PRQIISKF 620

Length = 647

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 82.7 bits (204), Expect = 1e-18
 Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 18/216 (8%)

Query: 2   YGMTET-CGVVTV--ENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPN-----QVGE 53
           YG++ET C  + +  ++  +    +G+ GR   GV+  +   D + P  P        G 
Sbjct: 317 YGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGT 376

Query: 54  LWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQV 113
           LW++ P  M GY+NN + T  ++  +GW++TGDL    E G  +I  R  E+I C G  +
Sbjct: 377 LWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNI 435

Query: 114 APAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARY 173
           AP E++ +      + +A     PD E G +    VV   ++ L +   +       AR+
Sbjct: 436 APDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVV--ASAELDESAARALKHTIAARF 493

Query: 174 KRL-------RNVTFTNSIPKTTSGKILRRELIAKL 202
           +R          +     IP+T SGK++R  L A  
Sbjct: 494 RRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAA 529

Length = 540

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 82.3 bits (204), Expect = 2e-18
 Identities = 53/218 (24%), Positives = 87/218 (39%), Gaps = 26/218 (11%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDT------------LKPLPP 48
            YG TE  G V   N L      G+ GR +      +V  D                +PP
Sbjct: 226 FYGSTE--GNVGFIN-LFNKP--GAVGR-LPPAAIAVVKYDVETEEPIRDANGFCIKVPP 279

Query: 49  NQVGELWVRGPILMP--GYFNNEQATKLII-----DKEGWLHTGDLGYFDEHGQLFIVDR 101
            +VG L        P  GY ++E   K I+       + + +TGDL   D  G  + VDR
Sbjct: 280 GEVGLLLGEITDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDR 339

Query: 102 IKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPE-AGEVPIAYVVRSPNSSLTKE 160
           + +  +  G  V+  E+E VL  HP + +A V     P   G   +A +  +P ++   +
Sbjct: 340 LGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVEVPGTEGRAGMAALTLAPGAAFDPQ 399

Query: 161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
                + +Q+  Y R   +    ++  T + K  + +L
Sbjct: 400 AFAAHLDEQLPAYARPLFLRVQAAMETTGTFKYQKTDL 437

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 82.4 bits (204), Expect = 2e-18
 Identities = 55/188 (29%), Positives = 82/188 (43%), Gaps = 15/188 (7%)

Query: 27  GRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGD 86
           G  + G+E ++V  D  + LPP  VG + +RG  + PGY   +       D +GWL TGD
Sbjct: 363 GPPLPGLEVRVVDED-GQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQ-DADGWLDTGD 420

Query: 87  LGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEIL--DAVVIPFPDPEAGEV 144
           LGY  E G++ +  R+K++I   G  + P ++E        +   +AV +      + E 
Sbjct: 421 LGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSRE- 479

Query: 145 PIAYVVRSPNSSLTKEDVQKFVVKQVARY------KRLRNVTF--TNSIPKTTSGKILRR 196
             A  V S           + +  QVA         R RNV      SIPKT SGK+ R 
Sbjct: 480 GFAVAVESNAFE--DPAEVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRA 537

Query: 197 ELIAKLRS 204
                +  
Sbjct: 538 NAAELVTP 545

Length = 545

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 82.3 bits (203), Expect = 2e-18
 Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 16/192 (8%)

Query: 24  GSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLH 83
           GS G  + G   +++   T +P  PN+ G L V  P L PG  +          K  W H
Sbjct: 410 GSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPP-LPPGCLSTVWGDDARFLKTYWSH 468

Query: 84  -------TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPF 136
                  + D G  DE G  FI+ R  ++I   G ++   E+E  + SHP + +  V+  
Sbjct: 469 FKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGV 528

Query: 137 PDPEAGEVPIAYVVRSPNSSLTKEDV--------QKFVVKQVARYKRLRNVTFTNSIPKT 188
            D   G+V + + +   + S                 VV+Q+    R   V F  ++PKT
Sbjct: 529 HDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKT 588

Query: 189 TSGKILRRELIA 200
            SGK+LRR + A
Sbjct: 589 RSGKLLRRSIQA 600

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 80.1 bits (198), Expect = 6e-18
 Identities = 56/205 (27%), Positives = 82/205 (40%), Gaps = 35/205 (17%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQV----GELWVR 57
           YGM+ET G         G                   CV    PL   +V    G + + 
Sbjct: 182 YGMSETSG---------G-------------------CVYDGVPLDGVRVRVEDGRIALG 213

Query: 58  GPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAE 117
           GP L  GY N          + GW  T DLG  D+ G L ++ R  + I   G  V P  
Sbjct: 214 GPTLAKGYRNPVDPDPFA--EPGWFRTDDLGALDD-GVLTVLGRADDAISTGGLTVLPQV 270

Query: 118 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR 177
           +E  L +HP + D  V   PD   G+  +A VV     + T E ++  V + + R    R
Sbjct: 271 VEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVARTLDRTAAPR 330

Query: 178 NVTFTNSIPKTTSGKILRRELIAKL 202
            +   + +P+   GK+ RR L+ + 
Sbjct: 331 ELHVVDELPRRGIGKVDRRALVRRF 355

Length = 358

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 79.4 bits (196), Expect = 2e-17
 Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 12/182 (6%)

Query: 25  SAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQAT-KLIIDKEG--W 81
           S GR   G    IV   +L+ L  N+VGE+W  GP +  GY+ N +A+ K  ++ +G  W
Sbjct: 371 SCGRSQPGHAVLIVDPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTW 430

Query: 82  LHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEIL-DAVVIPFPDPE 140
           L TGDLG F   G+LF+  R+K+++   G  + P ++E  +    E++    V  F    
Sbjct: 431 LRTGDLG-FLRDGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAFAVNH 489

Query: 141 AGEVPI---AYVVRSPNSSLTKEDVQKFVVKQVARYKRL--RNVTFTN--SIPKTTSGKI 193
            GE  I   A + RS    L  + + K + + VA   +     V   N  ++PKT+SGK+
Sbjct: 490 QGEEGIGIAAEISRSVQKILPPQALIKSIRQAVAEACQEAPSVVLLLNPGALPKTSSGKL 549

Query: 194 LR 195
            R
Sbjct: 550 QR 551

Length = 4334

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 77.7 bits (192), Expect = 4e-17
 Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 16/200 (8%)

Query: 1   GYGMTET--CGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPP--NQVGELWV 56
             G +ET   G             + + G+   G +  ++  D    +PP   +VG +  
Sbjct: 167 ALGASETGGGGSSVSRAG-----GASATGKFELGPDTVVLDEDG-SEVPPGSGEVGWIAR 220

Query: 57  RGPILMP-GYFNNE---QATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQ 112
            G +  P GY+ +      T   ID   +   GD    +  G + ++ R    I   G +
Sbjct: 221 GGRV--PLGYYKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEK 278

Query: 113 VAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVAR 172
           V P E+E  L +HP++ DA+V+  PD   G+  +A V     + L   +++    + +A 
Sbjct: 279 VFPEEVEEALKAHPDVADALVVGVPDERWGQRVVAVVQLRAGAGLDLAELRDHCRQHLAG 338

Query: 173 YKRLRNVTFTNSIPKTTSGK 192
           YK  R +   +++P+  SGK
Sbjct: 339 YKLPRAIVVVDTVPRAPSGK 358

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 77.9 bits (192), Expect = 6e-17
 Identities = 64/215 (29%), Positives = 98/215 (45%), Gaps = 31/215 (14%)

Query: 2   YGMTETCGVVTVENPLLGVQ-------NSGSA------GRLVAGVEAQIVCVDTLKPLPP 48
           YG+ E+   VTV  P +G++       +   A      G  + G+E +I   D    +  
Sbjct: 310 YGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAG 369

Query: 49  NQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKC 108
            ++GE+ +RG  +M GY          ID + W  TGDLGY  + G L +  R KELI  
Sbjct: 370 REIGEIEIRGASMMSGYLGQAP-----IDPDDWFPTGDLGYLVD-GGLVVCGRAKELITV 423

Query: 109 NGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVP---IAYVVRSPNSSLTKEDVQKF 165
            G  + P E+E V      + +  V+     E    P   IA   R P+ +  + +    
Sbjct: 424 AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPDEAGARSE---- 479

Query: 166 VVKQVARYKRL--RNVTFT--NSIPKTTSGKILRR 196
           VV++VA    +   +V F    S+P+T+SGK LRR
Sbjct: 480 VVQRVASECGVVPSDVVFVAPGSLPRTSSGK-LRR 513

Length = 525

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 77.7 bits (192), Expect = 7e-17
 Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 9/205 (4%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           YG +E     T      G   + S GR +AG +A ++    L+P+P    GEL++ G  +
Sbjct: 246 YGPSEDTTYSTYAEVEPGASRTPSIGRPLAGTQAYVL-DAHLQPVPVGVPGELYIGGAGV 304

Query: 62  MPGYFNNEQAT--KLIIDKEGWL------HTGDLGYFDEHGQLFIVDRIKELIKCNGFQV 113
             GY    + T  + + +            TGDL      GQL  + RI + +K  GF++
Sbjct: 305 ARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKVRGFRI 364

Query: 114 APAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARY 173
              E+E  L S P + +AVV+   D       +AY+V  P +++  ED++  +  ++  Y
Sbjct: 365 ELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYIVADPGAAIDIEDLRARLATRLPAY 424

Query: 174 KRLRNVTFTNSIPKTTSGKILRREL 198
                    +++P T +GKI R+ L
Sbjct: 425 MVPSRFVRLDALPLTPNGKIDRKAL 449

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 77.7 bits (192), Expect = 7e-17
 Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 54/238 (22%)

Query: 5   TETCGVVTVEN--------PLLGVQNS--------GSAGRLVAGVEAQIVCVDTLKPLPP 48
           +E  GV  ++N        P+L +           GS G  + G   +++   T +P  P
Sbjct: 376 SEALGVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGP 435

Query: 49  NQVGELWVRGPILMPG---------------YFNNEQATKLIIDKEGWLHTGDLGYFDEH 93
           N+ G L + GP L PG               Y++          ++ +  T D G  D  
Sbjct: 436 NEKGVLVIEGP-LPPGCMQTVWGDDDRFVKTYWSL-------FGRQVY-STFDWGIRDAD 486

Query: 94  GQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV-RS 152
           G  FI+ R  ++I   G ++   E+E  + SHP + +  V+   D   G+V +A+VV + 
Sbjct: 487 GYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKD 546

Query: 153 PNSSLTKE-------DVQKFVVKQ---VARYKRLRNVTFTNSIPKTTSGKILRRELIA 200
            +S   +E       ++   V  Q   VAR  R   V F +++PKT SGK+LRR + A
Sbjct: 547 SDSLADREARLALEKEIMALVDSQLGAVARPAR---VWFVSALPKTRSGKLLRRAIQA 601

Length = 629

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 76.8 bits (190), Expect = 1e-16
 Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 17/201 (8%)

Query: 1   GYGMTET--CGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVD-TLKPLPPNQVGELWV- 56
             G +ET   G  TV       + +   G     +  + V +D    P+ P      W+ 
Sbjct: 328 SIGSSETGFGGSGTVA------KGAVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIA 381

Query: 57  -RGPILMP-GYFNNEQATK---LIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGF 111
            RG I  P GY+ + + T      ID   +   GD    +  G + ++ R    I   G 
Sbjct: 382 RRGHI--PLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGE 439

Query: 112 QVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVA 171
           +V P E+E  L +HP++ DA+V+  PD   G+  +A V     +     +++      +A
Sbjct: 440 KVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHCRSSLA 499

Query: 172 RYKRLRNVTFTNSIPKTTSGK 192
            YK  R + F + + ++ +GK
Sbjct: 500 GYKVPRAIWFVDEVQRSPAGK 520

Length = 533

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 75.1 bits (185), Expect = 6e-16
 Identities = 52/209 (24%), Positives = 79/209 (37%), Gaps = 27/209 (12%)

Query: 2   YGMTETCGVVTVE--------NPLLGVQNSGSAGRLVAGVEAQIVCV--------DTLKP 45
           YG TE   V ++E                    G  V G++ +I+ +        D    
Sbjct: 233 YGATEALPVASIEGREVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIE 292

Query: 46  LPPNQVGELWVRGPILMPGYFNNEQATKL--IIDKEGWLH-TGDLGYFDEHGQLFIVDRI 102
           LPP +VGE+ V GP +   Y+N  +ATKL  I D     H  GDLGYFD+ G+L+   R 
Sbjct: 293 LPPGEVGEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRK 352

Query: 103 KELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYV-----VRSPNSSL 157
              ++  G  +    +E V   HP +  + ++        + P+  V     V      L
Sbjct: 353 AHRVETAGGTLFTVPVEQVFNRHPGVRRSALVGV-GKPGTQAPVLVVEPMPPVLDRRKRL 411

Query: 158 TKEDVQKFVVKQVARYKRLRNVTFTNSIP 186
                     KQ      ++ V      P
Sbjct: 412 EGRLRATA--KQAPATVEIQAVLIHPQFP 438

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 74.9 bits (185), Expect = 7e-16
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 20/147 (13%)

Query: 2   YGMTETCGVVTVE-NPLLGVQNSGSA-------GRLVAGVEAQIV--------CVDTLKP 45
           YG TE   + ++E   +L    + +        GR V GVE +I+          D    
Sbjct: 322 YGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALR 381

Query: 46  LPPNQVGELWVRGPILMPGYFNNEQATKL--IIDKEG--WLHTGDLGYFDEHGQLFIVDR 101
           L   ++GE+ V GP++   Y+N  +AT+L  I D +G  W   GDLGY D  G+L+   R
Sbjct: 382 LATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGR 441

Query: 102 IKELIKCNGFQVAPAELEGVLVSHPEI 128
               ++  G  +     E +  +HP +
Sbjct: 442 KAHRVETAGGTLYTIPCERIFNTHPGV 468

Length = 552

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 74.5 bits (184), Expect = 8e-16
 Identities = 62/216 (28%), Positives = 98/216 (45%), Gaps = 20/216 (9%)

Query: 2   YGMTETCGVVT---VENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG 58
           YG TE    VT   + + +L        G         I+  +    LP  + GE+ + G
Sbjct: 293 YGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLII-DEEGTKLPDGEQGEIVISG 351

Query: 59  PILMPGYFNNEQATK---LIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAP 115
           P +  GY NN + T       D +   HTGD GY ++ G LF   RI   IK NG+++  
Sbjct: 352 PSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLED-GLLFYQGRIDFQIKLNGYRIEL 410

Query: 116 AELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS-----SLT---KEDVQKFVV 167
            E+E  L     +  AVV+P+      +  IAYVV           LT   K+++++ ++
Sbjct: 411 EEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLM 470

Query: 168 KQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLR 203
           +    Y   R   + +S+P T +GKI R+ LI ++ 
Sbjct: 471 E----YMIPRKFIYRDSLPLTPNGKIDRKALIEEVN 502

Length = 503

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 74.5 bits (183), Expect = 9e-16
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 2/126 (1%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG TE   V+T+ N +   ++    G  + G++  IV  +T  P+   + G +  RG  
Sbjct: 331 GYGTTECSPVITI-NTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTS 389

Query: 61  LMPGYFNNEQATKLI-IDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
           L  GY   +     + +  E W  TGDLGY D HG+LF+  R+   +K     V+   LE
Sbjct: 390 LFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALE 449

Query: 120 GVLVSH 125
            +L+  
Sbjct: 450 SILMEG 455

Length = 539

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 73.7 bits (181), Expect = 2e-15
 Identities = 55/158 (34%), Positives = 77/158 (48%), Gaps = 26/158 (16%)

Query: 1   GYGMTETCGVVTVENP----LLGVQNSGSAGRLVAGVEAQIVCVDTL--KPLPPNQVGEL 54
           GYG+TET G  T+  P    +LG     + G      E ++  V  +   PL     GE+
Sbjct: 414 GYGLTETLGPTTLGFPDEMCMLG-----TVGAPAVYNELRLEEVPEMGYDPLGEPPRGEI 468

Query: 55  WVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCN-GFQV 113
            VRG  L  GY+ N + T+ ++ K+GW HTGD+G    +G L I+DR K LIK + G  V
Sbjct: 469 CVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYV 527

Query: 114 APAELEGVLVSHPEILD-------------AVVIPFPD 138
           A   LE V   +P + D             AVV+P  +
Sbjct: 528 ALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVVVPNEE 565

Length = 660

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 61/184 (33%), Positives = 85/184 (46%), Gaps = 28/184 (15%)

Query: 37  IVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATK-----LIIDK-----EG-WLHTG 85
           IV  DT    P   VGE+WV G  +  GY+   + T+      ++D      EG WL TG
Sbjct: 383 IVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTG 442

Query: 86  DLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVV--IPFPDPEAGE 143
           DLG+  E G+LFIV RIK+L+  +G    P ++E  +    EI    V  I  PD +  E
Sbjct: 443 DLGFISE-GELFIVGRIKDLLIVDGRNHYPDDIEATI---QEITGGRVAAISVPD-DGTE 497

Query: 144 --VPIAYVVRSPNSSLTKED----VQKFVVKQVARYKRLRNVTF----TNSIPKTTSGKI 193
             V I  + +  +S     D    V++ V   +++   L           SIP TTSGKI
Sbjct: 498 KLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGLSVADLVLVAPGSIPITTSGKI 557

Query: 194 LRRE 197
            R  
Sbjct: 558 RRAA 561

Length = 578

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 70.8 bits (173), Expect = 3e-14
 Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 16/210 (7%)

Query: 1    GYGMTETCGVVTVENPLLGVQNSGSA-----GRLVAGVEAQIVCVDTLKPLPPNQVGELW 55
            GYG TE   VVT        Q+   A     GR +    A I+  D L  L P   GEL+
Sbjct: 2293 GYGPTEA--VVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDAD-LNLLAPGMAGELY 2349

Query: 56   VRGPILMPGYFNNE--QATKLIIDK-----EGWLHTGDLGYFDEHGQLFIVDRIKELIKC 108
            + G  L  GY N     A + + D      E    TGDL  +   G +  + RI   +K 
Sbjct: 2350 LGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKI 2409

Query: 109  NGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVK 168
             GF++   E+E  L +HP + +AVV+   D  +G+  +AYVV    +     +++ ++  
Sbjct: 2410 RGFRIELGEIEARLQAHPAVREAVVVAQ-DGASGKQLVAYVVPDDAAEDLLAELRAWLAA 2468

Query: 169  QVARYKRLRNVTFTNSIPKTTSGKILRREL 198
            ++  Y    +      +P   +GK+ R+ L
Sbjct: 2469 RLPAYMVPAHWVVLERLPLNPNGKLDRKAL 2498

Length = 5163

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 68.6 bits (168), Expect = 9e-14
 Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 15/214 (7%)

Query: 2   YGMTETCGVVT---VENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG 58
           YG TE    VT   +   +L        G     +   I+  +  +PLP  + GE+ + G
Sbjct: 291 YGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIM-DEEGEPLPEGEKGEIVIVG 349

Query: 59  PILMPGYFNNEQAT-KLIIDKEGW--LHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAP 115
           P +  GY NN + T +     EG     TGD G     GQLF   R+   IK +G+++  
Sbjct: 350 PSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTI-TDGQLFYQGRLDFQIKLHGYRIEL 408

Query: 116 AELEGVLVSHPEILDAVVIP-FPDPEAGEVPIAYVVRSPNS-----SLTKEDVQKFVVKQ 169
            ++E  L     I  AVV+P +      E  IA +V           LTK  ++K + K 
Sbjct: 409 EDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKA-IKKELKKS 467

Query: 170 VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLR 203
           +  Y   R   + + +P T +GKI R+ L  ++ 
Sbjct: 468 LPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN 501

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 69.0 bits (169), Expect = 9e-14
 Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 28/206 (13%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TE   VV++  P+      G+ GR++ G++A+++ V  ++     Q G L ++GP 
Sbjct: 510 GYGVTECAPVVSINVPM--AAKPGTVGRILPGMDARLLSVPGIE-----QGGRLQLKGPN 562

Query: 61  LMPGYFNNEQATKLI---------IDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGF 111
           +M GY   E+   L            + GW  TGD+  FDE G + I  R K   K  G 
Sbjct: 563 IMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGE 622

Query: 112 QVAPAELEGV----LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVV 167
            V+   LE V    L   P+   A  I   D   GE   A V+ + +S LT+E +Q++  
Sbjct: 623 MVS---LEMVEQLALGVSPDKQHATAIK-SDASKGE---ALVLFTTDSELTREKLQQYAR 675

Query: 168 KQ-VARYKRLRNVTFTNSIPKTTSGK 192
           +  V      R++ +   +P   SGK
Sbjct: 676 EHGVPELAVPRDIRYLKQLPLLGSGK 701

Length = 718

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 61/197 (30%), Positives = 89/197 (45%), Gaps = 17/197 (8%)

Query: 1    GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPP-NQVGELWVRGP 59
            GYG+TET  V+ +  P+     +G+ GRL+ G+E +      L+P+P  ++ G L+VRGP
Sbjct: 938  GYGVTETAPVIALNTPMH--NKAGTVGRLLPGIEYR------LEPVPGIDEGGRLFVRGP 989

Query: 60   ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
             +M GY   E    L    +GW  TGD+   DE G + I  R K   K  G  ++ A +E
Sbjct: 990  NVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVE 1049

Query: 120  GVLVSH--PEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRL- 176
              L +   P+ L A V   PD   GE  I        S  T+           A    + 
Sbjct: 1050 E-LAAELWPDALHAAV-SIPDARKGERIILLTTA---SDATRAAFLAHAKAAGASELMVP 1104

Query: 177  RNVTFTNSIPKTTSGKI 193
              +   + IP   +GKI
Sbjct: 1105 AEIITIDEIPLLGTGKI 1121

Length = 1140

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 28/156 (17%)

Query: 1   GYGMTETCG--VVTVENPLLGVQNSGSAGRLVAGVEAQIVCV-----DTLKPLPPNQVGE 53
           GYG+TE+CG    ++ N    V   G+ G  +  +EA++  V     D L  +P    GE
Sbjct: 414 GYGLTESCGGCFTSIANVFSMV---GTVGVPMTTIEARLESVPEMGYDALSDVPR---GE 467

Query: 54  LWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCN-GFQ 112
           + +RG  L  GY   +  T+ ++  +GW HTGD+G +  +G + I+DR K + K + G  
Sbjct: 468 ICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEY 526

Query: 113 VAPAELEGVLVSHPEI-------------LDAVVIP 135
           VA   LE      P I             L AVV+P
Sbjct: 527 VAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVP 562

Length = 660

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 66.9 bits (163), Expect = 4e-13
 Identities = 37/128 (28%), Positives = 51/128 (39%), Gaps = 5/128 (3%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
            YG TE             +++    GR VA  +  I+    L+PLP    GEL++ G  
Sbjct: 518 LYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLG 576

Query: 61  LMPGYFNNEQAT--KLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAEL 118
           L  GY N    T  + I        TGDL      G L  + R    +K  GF++   E+
Sbjct: 577 LALGYLNRPDLTAERFIAL--RLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEI 634

Query: 119 EGVLVSHP 126
           E  L   P
Sbjct: 635 EAALAEQP 642

Length = 642

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 59/219 (26%), Positives = 85/219 (38%), Gaps = 51/219 (23%)

Query: 25  SAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII-------- 76
           SAG++     A IV  +T   LP  Q+GE+W+ G  +  GY+   + T            
Sbjct: 392 SAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRL 451

Query: 77  ---------DKEGWLHTGDLG-YFDEHGQLFIVDRIKELIKCNGFQVAPAELE-GVLVSH 125
                    D   W+ TGD G YFD  G+L+I  R+K+L+  +G    P +LE     + 
Sbjct: 452 SESHAEGAPDDALWVRTGDYGVYFD--GELYITGRVKDLVIIDGRNHYPQDLEYTAQEAT 509

Query: 126 PEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLT---------------------KEDVQK 164
             +    V  F  P A ++P   V    ++ L                      K D Q 
Sbjct: 510 KALRTGYVAAFSVP-ANQLP-QVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKLDPQP 567

Query: 165 FVVKQVARYKRLRNVTFTN-------SIPKTTSGKILRR 196
                 A       VT  +       SIP+T+SGKI RR
Sbjct: 568 IADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARR 606

Length = 631

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 64.6 bits (157), Expect = 3e-12
 Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 11/203 (5%)

Query: 2    YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
            YG TE    VT    +   +++   GR +A     I+   +L+P+P   +GEL++ G  L
Sbjct: 3341 YGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYIL-DGSLEPVPVGALGELYLGGEGL 3399

Query: 62   MPGYFNNEQAT------KLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAP 115
              GY N    T         +  E    TGDL  +   G +  + R+   +K  GF++  
Sbjct: 3400 ARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIEL 3459

Query: 116  AELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKR 175
             E+E  L+ HP + +AVV+       G   +AYVV    +   +E ++  +   +  Y  
Sbjct: 3460 GEIEARLLEHPWVREAVVL----AVDGRQLVAYVVPEDEAGDLREALKAHLKASLPEYMV 3515

Query: 176  LRNVTFTNSIPKTTSGKILRREL 198
              ++ F   +P T +GK+ R+ L
Sbjct: 3516 PAHLLFLERMPLTPNGKLDRKAL 3538

Length = 5163

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 64.7 bits (157), Expect = 3e-12
 Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 10/137 (7%)

Query: 1   GYGMTETCGVVTVENP-LLGVQNSGSAGRLVAGVEAQIVCVDTLK--PLPPNQVGELWVR 57
           GYG+TE+C    V  P  L +   G+ G  V  V+ ++  V  ++   L     GE+ +R
Sbjct: 417 GYGLTESCAGTFVSLPDELDML--GTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIR 474

Query: 58  GPILMPGYFNNEQATK-LIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIK-CNGFQVAP 115
           G  L  GY+  E  TK ++ID  GWLHTGD+G +  +G + I+DR K + K   G  VA 
Sbjct: 475 GKTLFSGYYKREDLTKEVLID--GWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAV 532

Query: 116 AELEGVLVSHPEILDAV 132
             +E +     + +D+V
Sbjct: 533 ENIENIY-GEVQAVDSV 548

Length = 666

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 16/211 (7%)

Query: 2    YGMTE-TCGVVTVENPLLGVQNSGSA-GRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP 59
            YG TE T GV T E             G+ +A +   I+    L P+P   VGEL++ G 
Sbjct: 804  YGPTETTVGVSTYELSDEERDFGNVPIGQPLANLGLYILDHY-LNPVPVGVVGELYIGGA 862

Query: 60   ILMPGYFNNE--QATKLIIDKEG-----WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQ 112
             L  GY       A + + D  G        TGDL  +   G +  + R+   +K  GF+
Sbjct: 863  GLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFR 922

Query: 113  VAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVAR 172
            +   E+E  L++ P + +AVV+  P  +AG   +AY+V +  +   +    +  +K   R
Sbjct: 923  IELGEIEARLLAQPGVREAVVLAQPG-DAGLQLVAYLVPAAVADGAEHQATRDELKAQLR 981

Query: 173  -----YKRLRNVTFTNSIPKTTSGKILRREL 198
                 Y    ++   +S+P T +GK+ R+ L
Sbjct: 982  QVLPDYMVPAHLLLLDSLPLTPNGKLDRKAL 1012

Length = 3956

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 64.0 bits (156), Expect = 4e-12
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 22/140 (15%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVE-AQIVCVD--------TLKPLPPNQV 51
           GYG+TETC   T         +  S GR+   +    +  V         + KP+P    
Sbjct: 451 GYGLTETCAGATFSEW-----DDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPR--- 502

Query: 52  GELWVRGPILMPGYFNNEQATKLI--IDKEG--WLHTGDLGYFDEHGQLFIVDRIKELIK 107
           GE+ + GP +  GYF N++ T  +  +D+ G  W +TGD+G F   G L I+DR K+++K
Sbjct: 503 GEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVK 562

Query: 108 C-NGFQVAPAELEGVLVSHP 126
             +G  V+  ++E  L   P
Sbjct: 563 LQHGEYVSLGKVEAALSVSP 582

Length = 696

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 11/205 (5%)

Query: 2    YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
            YG TE    VT    +    +S   GR +A +   I+  + L+P+P   +GEL++ G  L
Sbjct: 803  YGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDAN-LEPVPVGVLGELYLAGRGL 861

Query: 62   MPGYFNNEQAT------KLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAP 115
              GY      T         +  E    TGDL  +   G +    RI   +K  G ++  
Sbjct: 862  ARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIEL 921

Query: 116  AELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKR 175
             E+E  L+ HP + +A V+       G+  + YVV        +E ++  +   +  Y  
Sbjct: 922  GEIEARLLEHPWVREAAVL----AVDGKQLVGYVVLESEGGDWREALKAHLAASLPEYMV 977

Query: 176  LRNVTFTNSIPKTTSGKILRRELIA 200
                     +P T +GK+ R+ L A
Sbjct: 978  PAQWLALERLPLTPNGKLDRKALPA 1002

Length = 5163

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 60/200 (30%), Positives = 87/200 (43%), Gaps = 32/200 (16%)

Query: 25  SAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII-------- 76
           S G++     A IV  DT   LP  +VGE+W+ G  +  GY+   + T+           
Sbjct: 403 SCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRL 462

Query: 77  ----------DKEGWLHTGDLG-YFDEHGQLFIVDRIKELIKCNGFQVAPAELEG-VLVS 124
                     D   WL TGDLG Y D  G+L+I  RI +LI  +G    P ++E  V  +
Sbjct: 463 AEGSHADGAADDGTWLRTGDLGVYLD--GELYITGRIADLIVIDGRNHYPQDIEATVAEA 520

Query: 125 HPEILDAVVIPFPDP-EAGEVPIAYVVRSPNSSLTKED---VQKFVVKQVARYKRLR--N 178
            P +    V  F  P E  E  +    R+  +S  + D       +   V+R   L   +
Sbjct: 521 SPMVRRGYVTAFTVPAEDNERLVIVAERAAGTS--RADPAPAIDAIRAAVSRRHGLAVAD 578

Query: 179 VTF--TNSIPKTTSGKILRR 196
           V      +IP+TTSGK+ RR
Sbjct: 579 VRLVPAGAIPRTTSGKLARR 598

Length = 612

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 53/193 (27%), Positives = 78/193 (40%), Gaps = 29/193 (15%)

Query: 1   GYGMTETCGVVT-VENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP 59
           G G TET    T V  P      SG  G    G E        LK +P     E+ V+GP
Sbjct: 326 GLGATETAPTATFVHWPTDR---SGVIGLPAPGTE--------LKLVPNGGKLEVRVKGP 374

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYF---DEHGQLFIVD-RIKELIK-CNGFQVA 114
            + PGY+ + + T    D+EG+   GD   F   D+  +  + D R+ E  K  +G  V+
Sbjct: 375 NVTPGYWRDPELTAEAFDEEGFYRIGDAVRFVDPDDPERGLVFDGRVAEDFKLASGTWVS 434

Query: 115 PAELEGVLVSH--PEILDAVV----------IPFPDPEAGEVPIAYVVRSPNSSLTKEDV 162
              L   LV+   P + DAVV          + FP+  A          S    L    V
Sbjct: 435 VGALRVALVAALAPLVQDAVVAGHDRDEIGLLVFPNLAACRRLAGLAEASAEDVLAHPAV 494

Query: 163 QKFVVKQVARYKR 175
           ++ +  ++A + R
Sbjct: 495 REALAARLAAHNR 507

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 60.9 bits (148), Expect = 4e-11
 Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 15/167 (8%)

Query: 47  PPNQVGELWVRGPI----LMPGYFNNEQAT--KLIID--KEG--WLHTGDLGYFDEHGQL 96
           P  + GE+  R       L  GY  NE AT  KL+ D  ++G  W  TGDL   D  G+ 
Sbjct: 295 PVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRW 354

Query: 97  FIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVV----IPFPDPEAGEVPIAYVVRS 152
           + +DR+ +  +     V+  E+  VL + P + +A V    +P  D  AG   I     S
Sbjct: 355 YFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGVKVPGYDGRAGCAAITLEESS 414

Query: 153 -PNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
              +  TK  + K   K++  Y     +  T  +  T + K  +  L
Sbjct: 415 AVETEFTKNLLAKLARKRLPSYAVPLFLRLTEEVATTGNHKQQKGVL 461

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 28/178 (15%)

Query: 42   TLKPLPPNQVGELWVRGPILMPGYFN--NEQATKLIIDKEGWL-----HTGDLGYFDEHG 94
            +L P+P    GEL++ G  L  GY N     A + + D  G +      TGDL  +   G
Sbjct: 1909 SLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADG 1968

Query: 95   QLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN 154
             +  + RI   +K  GF++   E+E  L     + +AVVI   D   G+  +AYVV  P 
Sbjct: 1969 VIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIA-QDGANGKQLVAYVV--PT 2025

Query: 155  SSLTKEDVQKFVVKQVARYKRLRN--------------VTFTNSIPKTTSGKILRREL 198
                 +D       QVA    L+N              + F   +P T +GK+ R+ L
Sbjct: 2026 DPGLVDD----DEAQVALRAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDRKAL 2079

Length = 3956

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 55/208 (26%), Positives = 88/208 (42%), Gaps = 12/208 (5%)

Query: 1    GYGMTETCGVVTVENPLLGVQNSGSA---GRLVAGVEAQIVCVDTLKPLPPNQVGELWVR 57
            GYG TE    VT+                GR VAG    ++    L P+P    GEL++ 
Sbjct: 3383 GYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVL-DGQLNPVPVGVAGELYIG 3441

Query: 58   GPILMPGYFNNE--QATKLIIDK-----EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNG 110
            G  L  GY       A + + D           TGDL  +   G +  + RI   +K  G
Sbjct: 3442 GVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRG 3501

Query: 111  FQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQV 170
            F++   E+E  L+ HP + +AVV+   D   G+  +AYVV +      +E ++  +   +
Sbjct: 3502 FRIELGEIEARLLQHPSVREAVVLAR-DGAGGKQLVAYVVPADPQGDWRETLRDHLAASL 3560

Query: 171  ARYKRLRNVTFTNSIPKTTSGKILRREL 198
              Y     +    ++P   +GK+ R+ L
Sbjct: 3561 PDYMVPAQLLVLAAMPLGPNGKVDRKAL 3588

Length = 3956

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 58.3 bits (141), Expect = 5e-10
 Identities = 65/221 (29%), Positives = 101/221 (45%), Gaps = 30/221 (13%)

Query: 2    YGMTETCGVVTVENPLLGV------QNSGSA--GRLVAGVEAQIVCVDTLKPLPPNQVGE 53
            YG TET     V  PL  +      + + S   GR+V    A I+  D L  +P    GE
Sbjct: 2481 YGPTET-----VVMPLACLAPEQLEEGAASVPIGRVVGARVAYILDAD-LALVPQGATGE 2534

Query: 54   LWVRGPILMPGYFNNE--QATKLIID----KEGWLH-TGDLGYFDEHGQLFIVDRIKELI 106
            L+V G  L  GY +     A + + D      G L+ TGDL      G +  V RI   +
Sbjct: 2535 LYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQV 2594

Query: 107  KCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLT-------K 159
            K  GF++   E+E  L+ HP + +AVV+   D  +G+    Y+V S  +          +
Sbjct: 2595 KIRGFRIELGEIESRLLEHPAVREAVVLAL-DTPSGKQLAGYLV-SAVAGQDDEAQAALR 2652

Query: 160  EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIA 200
            E ++  + +Q+  Y    ++   +S+P T +GK+ RR L A
Sbjct: 2653 EALKAHLKQQLPDYMVPAHLILLDSLPLTANGKLDRRALPA 2693

Length = 4334

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 57.7 bits (139), Expect = 5e-10
 Identities = 44/185 (23%), Positives = 87/185 (47%), Gaps = 7/185 (3%)

Query: 24  GSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLH 83
           G+ GR++   E ++V  D     P  + G+LWVRGP +  GY+N   +    +  EGWL 
Sbjct: 313 GTLGRVLPPYEIRVVAPDGTTAGPGVE-GDLWVRGPAIAKGYWNRPDS---PVANEGWLD 368

Query: 84  TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGE 143
           T D    D  G +    R  +     G  V P E+E +++    + +A V+   +     
Sbjct: 369 TRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGAS 428

Query: 144 VPIAYVVRSPNSSLTK---EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIA 200
              A++V +  +++      D+ + ++ +++ +K        + +P+T +GK++R  L  
Sbjct: 429 TLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRK 488

Query: 201 KLRSK 205
           +  +K
Sbjct: 489 QSPTK 493

Length = 705

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 56.9 bits (137), Expect = 1e-09
 Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 20/216 (9%)

Query: 1    GYGMTETCGVVTVENPLLGVQNSGSA---GRLVAGVEAQIVCVDTLKPLPPNQVGELWVR 57
            GYG TET   V +     G     +    G  +      ++    L PLP    GEL++ 
Sbjct: 4841 GYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVL-DGQLNPLPVGVAGELYLG 4899

Query: 58   GPILMPGYFNNE--QATKLI---IDKEG--WLHTGDLGYFDEHGQLFIVDRIKELIKCNG 110
            G  +  GY       A + +       G     TGDL  +   G +  + R+   +K  G
Sbjct: 4900 GEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRG 4959

Query: 111  FQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQV 170
            F++   E+E  L  HP + +AVVI       G+  + YVV    +    ++ Q  +  ++
Sbjct: 4960 FRIELGEIEARLREHPAVREAVVIAQEGA-VGKQLVGYVVPQDPALADADEAQAELRDEL 5018

Query: 171  ARYKRLR--------NVTFTNSIPKTTSGKILRREL 198
                R R        ++ F   +P T +GK+ R+ L
Sbjct: 5019 KAALRERLPEYMVPAHLVFLARMPLTPNGKLDRKAL 5054

Length = 5163

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 37/179 (20%)

Query: 1   GYGMTETCGVVT-VENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP 59
           G GMTET    T    PL     +G+ G    G E ++V V            E+ V+GP
Sbjct: 371 GLGMTETAPSATFTTGPLSR---AGNIGLPAPGCEVKLVPVGGKL--------EVRVKGP 419

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYF---DEHGQLFIVD-RIKELIK-CNGFQVA 114
            + PGY+   + T    D+EG+  +GD   F    +  +  + D RI E  K  +G  V+
Sbjct: 420 NVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVS 479

Query: 115 PAELEGVLVSH--PEILDAVV----------IPFPDPEA--------GEVPIAYVVRSP 153
              L    VS   P + D V+          + FP+ +A         +  +A V+  P
Sbjct: 480 VGPLRARAVSAGAPLVQDVVITGHDRDEIGLLVFPNLDACRRLAGLLADASLAEVLAHP 538

Length = 614

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 49/162 (30%), Positives = 65/162 (40%), Gaps = 35/162 (21%)

Query: 1   GYGMTETCGVVTVENPLLGV----QNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWV 56
           GYG TET    T      G     +  G  G  + GVE        LK  P     E+ V
Sbjct: 383 GYGATETAPTTT------GTHWDTERVGLIGLPLPGVE--------LKLAPVGDKYEVRV 428

Query: 57  RGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYF---DEHGQLFIVD-RIKELIKC-NGF 111
           +GP + PGY  + + T    D+EG+   GD   F   D+  +  I D R+ E  K   G 
Sbjct: 429 KGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGT 488

Query: 112 QVAPAELEGVLV--SHPEILDAVV----------IPFPDPEA 141
            V+   L    V    P I DAVV          + +P+P A
Sbjct: 489 WVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGLLAWPNPAA 530

Length = 624

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 54.1 bits (130), Expect = 8e-09
 Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 4/129 (3%)

Query: 80  GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDP 139
           G+  +GD    D+ G  ++  R+ ++I  +G ++  AE+E  LVSHP+  +A V+     
Sbjct: 513 GYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHE 572

Query: 140 EAGEVPIAYVVRS---PNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRR 196
             G+   A+V      P S   ++ +   V  Q+  +     + +   +PKT SGKI+RR
Sbjct: 573 VKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRR 632

Query: 197 ELIAKLRSK 205
            ++ K+ S+
Sbjct: 633 -ILRKIASR 640

Length = 666

>gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009)

 Score = 47.1 bits (113), Expect = 5e-08
 Identities = 15/26 (57%), Positives = 17/26 (65%)

Query: 173 YKRLRNVTFTNSIPKTTSGKILRREL 198
           Y   R V F + +PKT SGKILRR L
Sbjct: 1   YAVPREVEFVDELPKTRSGKILRRLL 26

This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 51.7 bits (124), Expect = 7e-08
 Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 9/179 (5%)

Query: 27   GRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNE--QATKLIIDKEG---- 80
            GR +  V  + V    L  LPP   GEL + G  L  GY       A + + D  G    
Sbjct: 1446 GRPLGNVLCR-VLDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGA 1504

Query: 81   -WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDP 139
                TGD   ++  G L  + R+ + +K  GF+V P E++  L++ P +  A V+   + 
Sbjct: 1505 RLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVL-VREG 1563

Query: 140  EAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
             AG   + Y           E ++  +  ++  Y     +   + +P   SGK+ RR L
Sbjct: 1564 AAGAQLVGYYTGEAGQEAEAERLKAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRAL 1622

Length = 4334

>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2)

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 57/228 (25%), Positives = 90/228 (39%), Gaps = 49/228 (21%)

Query: 9   GVVTVE----NPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPG 64
           GVV V+       L +Q+SG    ++ G +  IV  DT      +++GE+WV        
Sbjct: 337 GVVRVDSEDKPSSLPLQDSGM---VMPGAQMCIVNPDTPPLCRTDEIGEIWVNSSANATS 393

Query: 65  YFNNEQATKLI-----------IDKEGWLHTGDLGYF----------DEHGQLFIVDRIK 103
           Y+     TK             I +  ++ TG LG+            + G LF+V  I 
Sbjct: 394 YYGLTGMTKNTFEVFPNSSSDGIGENPYVRTGLLGFVGPTSHSMGPVVDMGLLFVVGSID 453

Query: 104 ELIKCNGFQVAPAELEG-VLVSHPEILDA----------VVIPFPDPEAGEVPIAYVVRS 152
           E ++ +G +  P ++E  VL  HP I             VV+      + E    +V R 
Sbjct: 454 ETLEVSGLRHNPDDIEATVLRVHPMIYRGRIAVFSVTERVVVVAEQRGSEEESFQWVPRV 513

Query: 153 PNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIA 200
            N+ L++  V  +VV  V             ++PKT  G+  R E  A
Sbjct: 514 LNAILSEHQVIVYVVALVPP----------GTLPKTPLGEKQRSETRA 551

Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 38/164 (23%), Positives = 58/164 (35%), Gaps = 25/164 (15%)

Query: 48  PNQVGELWVRGPI-LMPGYFNNEQATKLIID------KEGWLHTGDLGYFDEHGQLFIVD 100
             +VGEL    P   MP YF N+       D         W H GD      HG + I  
Sbjct: 433 IGEVGELVCTKPFPSMPLYFWNDPDGSRYRDAYFDTFPGVWRH-GDWIKITPHGGVIIYG 491

Query: 101 RIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE 160
           R    +   G ++  AE+  V+   PE+ D++V+     +  E    +V      +L   
Sbjct: 492 RSDATLNPGGVRIGTAEIYRVVEKIPEVEDSLVVGQEVDDGDERMPLFVKLREGVTLDDA 551

Query: 161 DVQKFVVKQVARYKRLRN----------VTFTNSIPKTTSGKIL 194
            V++           +R           +     IP T SGK +
Sbjct: 552 LVKRIR-------SAIRAALSPRHVPAEIIAVPDIPYTLSGKKV 588

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVA-GVEAQIVCVDTLKP--LPPNQVGELWVR 57
           GYG+TET G + V++      N+ S G  ++   + ++   +T K     P   GEL ++
Sbjct: 492 GYGLTETTGPIFVQHAD--DNNTESIGGPISPNTKYKVRTWETYKATDTLPK--GELLIK 547

Query: 58  GPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIK 107
              +  GYF  ++ TK    ++G+  TGD+   +++G L  +DR K L+K
Sbjct: 548 SDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVK 597

Length = 746

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 13/101 (12%)

Query: 43  LKPLPPNQVGELWV----RGPILMPGYFNNEQAT--KLIID--KEG--WLHTGDLGYFDE 92
              + P +VG L      RGP    GY  + +A+  K++ D  K+G  W +TGDL   D 
Sbjct: 395 CIKVKPGEVGLLIGRITDRGP--FDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDG 451

Query: 93  HGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVV 133
            G    VDR+ +  +  G  VA  E+E  L   P + +AVV
Sbjct: 452 FGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVV 492

Length = 600

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 11/170 (6%)

Query: 41   DTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII-------DKEGWLHTGDLGYFDEH 93
            + L+ +P   VGEL V G  +  GY  +   T L           E    TGDL      
Sbjct: 4056 EALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSD 4115

Query: 94   GQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP 153
            G L  V RI   +K  G+++   E+E  L    E+ +A V        G+  + Y+V   
Sbjct: 4116 GVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQEGVN-GKHLVGYLVPHQ 4174

Query: 154  ---NSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIA 200
                     E +++ +  ++  Y    +  + + +P   +GK+ R+ L A
Sbjct: 4175 TVLAQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPA 4224

Length = 4334

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 36/172 (20%), Positives = 75/172 (43%), Gaps = 16/172 (9%)

Query: 41  DTLKPLPPNQVGELWVRGPILMPGYFNNEQ--ATKLIIDK----EGWLHTGDLGYFDEHG 94
             ++P+PP   G+L++ G  L  GY       A++ I D     E    TGD+  + + G
Sbjct: 792 ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDG 851

Query: 95  QLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEI----LDAVVIPFPDPEAGEVP--IAY 148
            +  + R  + +K  G ++   E++  + + P++      A VI       G+    + Y
Sbjct: 852 AVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGY 911

Query: 149 VVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFT--NSIPKTTSGKILRREL 198
           +V      L    +Q  + +++  +  +  V     + +P + +GK+ R+ L
Sbjct: 912 LVSQSGLPLDTSALQAQLRERLPPH--MVPVVLLQLDQLPLSANGKLDRKAL 961

Length = 1296

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 28/178 (15%)

Query: 38  VCVDTLKPLPPNQ----VGELWVRGPIL-MPGYFNNEQATKLIID---KEG--WLHTGDL 87
           +C+    P  P +    VG++    P+    GY N     K I     K+G     +GD+
Sbjct: 301 LCI----PCQPGEPGLLVGKIIQNDPLRRFDGYVNEGATNKKIARDVFKKGDSAFLSGDV 356

Query: 88  GYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVV----IPFPDPEAGE 143
              DE G L+  DR  +  +  G  V+  E+EG+L +   + D VV    +P  +  AG 
Sbjct: 357 LVMDELGYLYFKDRTGDTFRWKGENVSTTEVEGILSNVLGLEDVVVYGVEVPGVEGRAGM 416

Query: 144 VPIAYVVRSPNSSLTKEDVQKFVV---KQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
             I    R       K D+ +F     K +  Y R + +     + KT + K+ + +L
Sbjct: 417 AAIVDPER-------KVDLDRFSAVLAKSLPPYARPQFIRLLPEVDKTGTFKLQKTDL 467

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 39.1 bits (91), Expect = 9e-04
 Identities = 48/208 (23%), Positives = 79/208 (37%), Gaps = 26/208 (12%)

Query: 3   GMTETCGVVTVENPLLGVQNSGSAGR-LVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI- 60
           G T+ C      NP L V         L   V++        KP+   +VGEL    P+ 
Sbjct: 419 GGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSW---DPEGKPVT-GEVGELVCTNPMP 474

Query: 61  LMPGYF-NNEQATKL---IIDKEG--WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVA 114
            MP  F N+   +K      D     W H GD       G + I  R    +   G ++ 
Sbjct: 475 SMPIRFWNDPDGSKYRDAYFDTYPGVWRH-GDWITLTPRGGIVIHGRSDSTLNPQGVRMG 533

Query: 115 PAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYK 174
            AE+   +    E+ +++ I    P+ G   + +V  +P ++L        ++ ++ R  
Sbjct: 534 SAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDA-----LLDRIKRTI 588

Query: 175 RL----RNV----TFTNSIPKTTSGKIL 194
           R     R+V         IP T +GK +
Sbjct: 589 RAGLSPRHVPDEIIEVPGIPHTLTGKRV 616

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 19/169 (11%)

Query: 45  PLPPNQVGELWVRGPILMP--GYFNNEQAT--KLIID--KEG--WLHTGDLGYFDEHGQL 96
           P+   + G L  +     P  GY    + T  KL+ D  K+G  + +TGDL   D    L
Sbjct: 341 PVGKGEPGLLISKITSQSPFLGYAGPRELTEKKLLRDVFKKGDVYFNTGDLLVQDRQNFL 400

Query: 97  FIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVV------IPFPDPEAGEVPIAYVV 150
           +  DR  +  +  G  VA  E+  +L     ++D +       +  P  E G   +A V+
Sbjct: 401 YFHDRTGDTFRWKGENVATTEVADIL----TMVDFIQEVNVYGVTVPGHE-GRAGMAAVI 455

Query: 151 RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELI 199
             P +    E + + V + +  Y R R +   +S+  T + K  +  L+
Sbjct: 456 LKPGTEFDLEKLYQHVREFLPAYARPRFLRIQDSMEVTGTFKQQKVRLV 504

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.98
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.98
PRK08308	414	acyl-CoA synthetase; Validated	99.97
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	99.97
PRK12582	624	acyl-CoA synthetase; Provisional	99.97
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.97
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	99.94
PRK09188	365	serine/threonine protein kinase; Provisional	99.93
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.92
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.92
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.9
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.89
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	99.87
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.79
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.71
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.69
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.69
PTZ00297	1452	pantothenate kinase; Provisional	99.59
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	99.51
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.5
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.06
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	98.4
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	98.3
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.06
PLN02249	597	indole-3-acetic acid-amido synthetase	97.6
PLN02247	606	indole-3-acetic acid-amido synthetase	97.28
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	97.22
PLN02620	612	indole-3-acetic acid-amido synthetase	97.2
PF00818	16	Ice_nucleation: Ice nucleation protein repeat; Int	87.38

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=4.4e-48  Score=320.30  Aligned_cols=203  Identities=48%  Similarity=0.812  Sum_probs=192.7

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      +||+||+|+.++.....+. .+++++|++++++...+.+ ++|+.++.++.||||++|++++.||+++|+.|++.++.+|
T Consensus       331 ~YGmTE~~~~~~~~~~~~e-~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~G  408 (537)
T KOG1176|consen  331 GYGMTEAGGLITSNDWGPE-RKPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDG  408 (537)
T ss_pred             eeccccccCceeecCCCcc-CcccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCC
Confidence            6999999987776655433 6899999999999988888 9999999999999999999999999999999999997779


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+|.+|+||+|++.+|..|+||.+|.+|+|.|||++|.+||.|.||+|++.+++..|+..+|+|+..++...+++
T Consensus       409 W~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~  488 (537)
T KOG1176|consen  409 WFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEK  488 (537)
T ss_pred             ccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998999999


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      ++.+++++++++|+.|..++++++||+|++|||+|+.|++.+.+.
T Consensus       489 di~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~  533 (537)
T KOG1176|consen  489 DIIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKL  533 (537)
T ss_pred             HHHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999998763

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=9.9e-43  Score=275.38  Aligned_cols=205  Identities=33%  Similarity=0.464  Sum_probs=191.3

Q ss_pred             CcccccCccceeccC-CccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808            1 GYGMTETCGVVTVEN-PLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~-~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~   79 (206)
                      +||+||+++..++.. .+...+...++|+.+++++..++| ..|..+|.|..|||+++|++.|.|||++++.+.+....+
T Consensus       382 ~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~d  460 (596)
T KOG1177|consen  382 AYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGND  460 (596)
T ss_pred             EeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccCCCceEEEEechhheeecCCcccchhhcccc
Confidence            599999998886653 334466778999999999999999 899999999999999999999999999999998888889


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCC--C
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS--L  157 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--~  157 (206)
                      .||+|||++.+|++|.++++||++|+|+.+|++|+|.+||+.+.++|.|.++.|+++++...|+.+++++-++....  .
T Consensus       461 rW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~  540 (596)
T KOG1177|consen  461 RWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKT  540 (596)
T ss_pred             cceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987765  4


Q ss_pred             CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHccC
Q 043808          158 TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI  206 (206)
Q Consensus       158 ~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~~  206 (206)
                      ++++|+.+++.++.++++|++|+++++||+|.+|||+|-+++++++..|
T Consensus       541 t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFeir~~~k~~l  589 (596)
T KOG1177|consen  541 TAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFEIREMSKGHL  589 (596)
T ss_pred             cHHHHHHHHhcccccccCCcEEEEeccCcccccccchhHHHHHHHHhhc
Confidence            8899999999999999999999999999999999999999999988653

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=8.7e-42  Score=287.76  Aligned_cols=203  Identities=47%  Similarity=0.778  Sum_probs=184.1

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      +||+||+++.++...........+.+|+|+|+++++|+|++++.+.| |++|||+++||+++.||+++|+.+...|+.++
T Consensus       323 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~g  401 (534)
T COG0318         323 GYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDG  401 (534)
T ss_pred             eecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCC
Confidence            69999999877666443201356677999999999999977776777 88999999999999999999999988775579


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC--CCCC
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN--SSLT  158 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~~~~  158 (206)
                      ||+|||++++|++|.++|.||.+|+|+.+|++|+|.+||+.+.++|.|.+++|++.+++..|+.++++++..+.  ...+
T Consensus       402 W~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~  481 (534)
T COG0318         402 WLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELT  481 (534)
T ss_pred             eeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999866  3447


Q ss_pred             HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          159 KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       159 ~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      .+++.+++++.++.++.|+.+++++++|+|++||++|+.|++++.+
T Consensus       482 ~~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         482 AEELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA  527 (534)
T ss_pred             HHHHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999998765

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=3.1e-41  Score=278.49  Aligned_cols=197  Identities=33%  Similarity=0.531  Sum_probs=174.6

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcC--CCCcccCCChhhccccccC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP--ILMPGYFNNEQATKLIIDK   78 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~--~~~~~y~~~~~~~~~~~~~   78 (206)
                      .||+||+|.++....+   ...+++.|+|+||+++.++|. +|++++.++ |+|+++.|  +++++||++++.+.+.+.+
T Consensus       321 ~~gqTEtg~~~~~~~~---~~~~g~~g~p~pG~~~~vvdd-~g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~  395 (528)
T COG0365         321 IYGQTETGMGFIAGRP---PVKNGSSGLPLPGYAVRRVDD-EGNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFG  395 (528)
T ss_pred             cccccccCccccCCCC---CcCCCCCCCCCCCceeEEECC-CCCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhh
Confidence            4999999965554433   334444599999999999994 499999999 99999997  8899999999888766634


Q ss_pred             CCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCC
Q 043808           79 EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLT  158 (206)
Q Consensus        79 ~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  158 (206)
                      . ||.|||.+++|+||+++|+||.||+||++|+++.+.+||++|.+||.|.||+|++.+++..|+.+++||++.++...+
T Consensus       396 ~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~  474 (528)
T COG0365         396 R-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN  474 (528)
T ss_pred             c-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChH
Confidence            4 999999999999999999999999999999999999999999999999999999999999999999999998876544


Q ss_pred             --HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHH
Q 043808          159 --KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLR  203 (206)
Q Consensus       159 --~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~  203 (206)
                        .++|++++++.+.++..|+.|.++++||+|.|||+.|+.|++.+.
T Consensus       475 ~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~  521 (528)
T COG0365         475 ELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILH  521 (528)
T ss_pred             HHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHh
Confidence              356777777778889999999999999999999999999999876

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=1.4e-40  Score=282.02  Aligned_cols=204  Identities=53%  Similarity=0.880  Sum_probs=184.9

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      +||+||++.+++............++|+|+|++.++|+|++++++++.|+.|||+++|++++.||++++..+...++.++
T Consensus       351 ~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g  430 (560)
T PLN02574        351 GYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDG  430 (560)
T ss_pred             cccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCC
Confidence            59999998766533222222456789999999999999988999999999999999999999999999999888777789


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.++++||.+|+|+++|++|++.+||+.|.++++|.+++|++.+++..++.++++++..+....+.+
T Consensus       431 ~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~  510 (560)
T PLN02574        431 WLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQE  510 (560)
T ss_pred             CcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999988888889999987766667788


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ++.+++++.|+.++.|..++++++||+|++||++|+.|++++.+
T Consensus       511 ~l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~  554 (560)
T PLN02574        511 AVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTN  554 (560)
T ss_pred             HHHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhh
Confidence            99999999999999999999999999999999999999998764

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.2e-40  Score=277.50  Aligned_cols=202  Identities=41%  Similarity=0.675  Sum_probs=184.7

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++++++....  ....++++|+|++++.++++| ++++.+|.|+.|||+++|++++.||+++++.+...|..++
T Consensus       357 ~YG~tE~~~~~~~~~~--~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g  433 (562)
T PRK05677        357 GYGMTETSPVVSVNPS--QAIQVGTIGIPVPSTLCKVID-DDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDG  433 (562)
T ss_pred             cCCccccCcceeecCc--cCCCCCccCccCCCCEEEEEC-CCCCCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCC
Confidence            5999999887755432  233567899999999999999 6789999999999999999999999999999988887789


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.+++.||.+|+|+++|.+|+|.+||+.+.++++|.+++|++.++...++.++++++..+....+.+
T Consensus       434 ~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~  513 (562)
T PRK05677        434 WLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKE  513 (562)
T ss_pred             cccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999988888889999987766667788


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      ++++++++.++.+++|..++++++||+|++||++|++|++++.++
T Consensus       514 ~l~~~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~~~~  558 (562)
T PRK05677        514 QVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEELKK  558 (562)
T ss_pred             HHHHHHHHhhhhccCCcEEEEeccCCCCCcccccHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999987665

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=8e-40  Score=281.40  Aligned_cols=202  Identities=27%  Similarity=0.430  Sum_probs=176.0

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcC---CCCcccCCChhhcccccc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP---ILMPGYFNNEQATKLIID   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~---~~~~~y~~~~~~~~~~~~   77 (206)
                      .||+||++++++.... ......+++|+|+|++.++|+| +++++++.|+.|||++++|   +++.||+++++.++..|+
T Consensus       411 ~yG~TE~~~~~~~~~~-~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~  488 (647)
T PTZ00237        411 GYGQTEIGITYLYCYG-HINIPYNATGVPSIFIKPSILS-EDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFS  488 (647)
T ss_pred             eechHHhChhhhccCC-CCCCCCCCCccCcCCceEEEEC-CCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHh
Confidence            5999999876543322 1223347899999999999999 6899999999999999986   789999999988877664


Q ss_pred             C-CCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCC-
Q 043808           78 K-EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS-  155 (206)
Q Consensus        78 ~-~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-  155 (206)
                      . ++||+|||+++++++|.++++||.||+|+++|++|+|.+||+.|.++|.|.+++|++.+++..++.+++||++.+.. 
T Consensus       489 ~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~  568 (647)
T PTZ00237        489 KFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQS  568 (647)
T ss_pred             CCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCcc
Confidence            3 78999999999999999999999999999999999999999999999999999999999998899999999987432 


Q ss_pred             --CCCH----HHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          156 --SLTK----EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       156 --~~~~----~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                        ..+.    +++++++++.|++++.|+.++++++||+|++||++|+.|++++..
T Consensus       569 ~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~  623 (647)
T PTZ00237        569 NQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLND  623 (647)
T ss_pred             ccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcC
Confidence              2232    456788888999999999999999999999999999999998753

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1.5e-39  Score=278.98  Aligned_cols=203  Identities=27%  Similarity=0.424  Sum_probs=179.5

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCC-CCCceEEEEEc--CCCCcccCCChhhcccccc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLP-PNQVGELWVRG--PILMPGYFNNEQATKLIID   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~-~g~~Gel~i~~--~~~~~~y~~~~~~~~~~~~   77 (206)
                      .||+||++++++..........++++|+|++++.++++| +++++++ .|+.|||++++  |+++.||+++++.+...+.
T Consensus       392 ~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~  470 (625)
T TIGR02188       392 TWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYF  470 (625)
T ss_pred             cccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHh
Confidence            599999998765443222245678899999999999999 8899999 89999999999  5899999999886655432


Q ss_pred             --CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCC
Q 043808           78 --KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS  155 (206)
Q Consensus        78 --~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  155 (206)
                        .++||+|||+++++++|.++++||.||+|+++|++|+|.+||+.|.++|.|.+++|++.+++..++.++++|++.+..
T Consensus       471 ~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~  550 (625)
T TIGR02188       471 SPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGY  550 (625)
T ss_pred             ccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCC
Confidence              378999999999999999999999999999999999999999999999999999999999988899999999987765


Q ss_pred             CCC---HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          156 SLT---KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       156 ~~~---~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ..+   .+++++++++.|+.++.|+.++++++||+|++||++|+.|++++..
T Consensus       551 ~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~  602 (625)
T TIGR02188       551 EPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAG  602 (625)
T ss_pred             CCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcC
Confidence            544   3689999999999999999999999999999999999999998754

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-39  Score=279.21  Aligned_cols=203  Identities=27%  Similarity=0.430  Sum_probs=179.4

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEc--CCCCcccCCChhhccccc--
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG--PILMPGYFNNEQATKLII--   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~--~~~~~~y~~~~~~~~~~~--   76 (206)
                      .||+||++++++..........++++|+|++++.++|+| +++++++.|+.|||++++  |+++.||+++++.+...+  
T Consensus       401 ~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~  479 (637)
T PRK00174        401 TWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFS  479 (637)
T ss_pred             cccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhc
Confidence            599999998775433222234567899999999999999 789999999999999999  689999999988775543  


Q ss_pred             cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCC
Q 043808           77 DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS  156 (206)
Q Consensus        77 ~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  156 (206)
                      ..++||+|||+++++++|.++|+||.||+|+++|++|+|.+||+.|.++++|.+++|++.+++..++.+++++++.+...
T Consensus       480 ~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~  559 (637)
T PRK00174        480 TFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEE  559 (637)
T ss_pred             CCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCC
Confidence            24789999999999999999999999999999999999999999999999999999999999888999999999876654


Q ss_pred             CC---HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          157 LT---KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       157 ~~---~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      .+   .++|++++.+.|+.++.|..++++++||+|++||++|+.|++.+..
T Consensus       560 ~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~  610 (637)
T PRK00174        560 PSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEG  610 (637)
T ss_pred             CCHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence            43   4689999999999999999999999999999999999999988654

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1.4e-39  Score=280.76  Aligned_cols=203  Identities=25%  Similarity=0.336  Sum_probs=179.1

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEc--CCCCcccCCChhhcccccc-
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG--PILMPGYFNNEQATKLIID-   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~--~~~~~~y~~~~~~~~~~~~-   77 (206)
                      .||+||+|+.++..........++++|+|+||+.++|+| ++++.++.+..|||++++  |+++.+|+++++.+...+. 
T Consensus       431 ~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~  509 (666)
T PLN02654        431 TWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFK  509 (666)
T ss_pred             cccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhh
Confidence            499999988765443322245678899999999999999 788999999899999999  7899999999887765432 


Q ss_pred             -CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCC
Q 043808           78 -KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS  156 (206)
Q Consensus        78 -~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  156 (206)
                       .++||+|||++++|+||.++|+||.||+||++|++|+|.+||+.+.++|.|.+++|++.+++..++.+++||++.+...
T Consensus       510 ~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~  589 (666)
T PLN02654        510 PFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVP  589 (666)
T ss_pred             cCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCC
Confidence             2689999999999999999999999999999999999999999999999999999999999988999999999987654


Q ss_pred             CCH---HHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          157 LTK---EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       157 ~~~---~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      .+.   ++|+++++++|++++.|+.++++++||+|++||++|+.|++.+..
T Consensus       590 ~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~  640 (666)
T PLN02654        590 YSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR  640 (666)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcC
Confidence            443   478889999999999999999999999999999999999998764

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.6e-39  Score=267.79  Aligned_cols=202  Identities=34%  Similarity=0.573  Sum_probs=183.3

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++..++...........+++|+|++++.++|+| ++++.++.|+.|||+|++++++.||+++++.+...+ .++
T Consensus       294 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g  371 (496)
T PRK06839        294 GFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELID-ENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDG  371 (496)
T ss_pred             eccCCCCCcceEecccccccccCCCCcccCCCceEEEEC-CCcCCCCCCCceEEEEECCCcchhhcCChHHHHHHH-cCC
Confidence            499999997665443333345578899999999999999 566779999999999999999999999998887766 689


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.+++.||.+|+|+.+|.+|+|.+||+.+.++++|.++++++.+++..++.++++++..+....+..
T Consensus       372 ~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~  451 (496)
T PRK06839        372 WLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEK  451 (496)
T ss_pred             CeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999988888999999998877777888


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ++++++.+.|+.++.|..+++++++|+|++||++|++|++++++
T Consensus       452 ~l~~~~~~~l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~~  495 (496)
T PRK06839        452 DVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKS  495 (496)
T ss_pred             HHHHHHHhhCcCCCCCcEEEEeccCCCCccccccHHHHHHHhhc
Confidence            99999999999999999999999999999999999999998875

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=1.1e-38  Score=269.16  Aligned_cols=204  Identities=54%  Similarity=0.869  Sum_probs=183.8

Q ss_pred             CcccccCccceeccCC---ccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc
Q 043808            1 GYGMTETCGVVTVENP---LLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~---~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~   77 (206)
                      +||+||++.+++....   ......++++|+|++++.++++|++++++++.|+.|||+++|+.++.||++++..+...++
T Consensus       330 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~  409 (537)
T PLN02246        330 GYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTID  409 (537)
T ss_pred             cccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccccCCchhhhhccc
Confidence            5999999877654311   1112345789999999999999978899999999999999999999999999998888887


Q ss_pred             CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCC
Q 043808           78 KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL  157 (206)
Q Consensus        78 ~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  157 (206)
                      .++||+|||+++++++|.++++||.||+|+++|.+|+|.+||+.+.++++|.+++|++.++...++.++++++..+....
T Consensus       410 ~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  489 (537)
T PLN02246        410 KDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEI  489 (537)
T ss_pred             CCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCCC
Confidence            78999999999999999999999999999999999999999999999999999999998888888889999988777667


Q ss_pred             CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          158 TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       158 ~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      +.+++++++.+.++.++.|..++++++||+|++||++|++|++++.+
T Consensus       490 ~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~~  536 (537)
T PLN02246        490 TEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA  536 (537)
T ss_pred             CHHHHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHhc
Confidence            78899999999999999999999999999999999999999998764

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=1.1e-38  Score=273.70  Aligned_cols=204  Identities=27%  Similarity=0.361  Sum_probs=175.4

Q ss_pred             CcccccCccceeccCCc--cCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcC---CCCcccCCChhhcccc
Q 043808            1 GYGMTETCGVVTVENPL--LGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP---ILMPGYFNNEQATKLI   75 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~---~~~~~y~~~~~~~~~~   75 (206)
                      +||+||++..++.....  ......+++|+|+|++.++|+|.+++++++.|+.|||++++|   ..+.+|++++..+...
T Consensus       385 ~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~  464 (628)
T TIGR02316       385 NYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKT  464 (628)
T ss_pred             cccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHh
Confidence            59999998655433221  113456789999999999999966899999999999999998   4678999988766543


Q ss_pred             c---cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeC
Q 043808           76 I---DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRS  152 (206)
Q Consensus        76 ~---~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  152 (206)
                      +   .+++||+|||++++|+||.++|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..++.+++||++.
T Consensus       465 ~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~  544 (628)
T TIGR02316       465 YWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILK  544 (628)
T ss_pred             hhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEc
Confidence            2   2467999999999999999999999999999999999999999999999999999999999998899999999887


Q ss_pred             CCCC--------CCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          153 PNSS--------LTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       153 ~~~~--------~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      +...        ...+++++++.++|++++.|+.++++++||+|++||++|+.|++.+..
T Consensus       545 ~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~  604 (628)
T TIGR02316       545 ESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEG  604 (628)
T ss_pred             CCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcC
Confidence            5432        124688999999999999999999999999999999999999988753

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-38  Score=264.76  Aligned_cols=203  Identities=32%  Similarity=0.550  Sum_probs=181.3

Q ss_pred             CcccccCccceeccCC-ccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808            1 GYGMTETCGVVTVENP-LLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~-~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~   79 (206)
                      .||+||++.++..... ......++++|+|+|++.++++| ++++.++.|..|||++++++++.||++++..++..++.+
T Consensus       282 ~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~  360 (488)
T PRK09088        282 GFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGD  360 (488)
T ss_pred             eecccccccccccCCCcccccccCCccccCCCCcEEEEEC-CCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCC
Confidence            4999999876543211 11133567899999999999999 678999999999999999999999999998888777778


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK  159 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (206)
                      +||+|||+++++++|.+++.||.+|+|+.+|.+++|.+||+.+..++.|.++++++.+++..++..+++++..+....+.
T Consensus       361 g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~  440 (488)
T PRK09088        361 GWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDL  440 (488)
T ss_pred             CCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999988777788888888876656678


Q ss_pred             HHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          160 EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       160 ~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      .++.+++++.++++++|..++++++||+|++||++|++|++++.+
T Consensus       441 ~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~  485 (488)
T PRK09088        441 ERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRDALAA  485 (488)
T ss_pred             HHHHHHHHhhCcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHHh
Confidence            899999999999999999999999999999999999999998865

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-38  Score=270.03  Aligned_cols=195  Identities=34%  Similarity=0.593  Sum_probs=174.9

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++..++... ......+.++|+|++++.++++| +++++++.|+.|||+++|++++.||++++..  ..  .++
T Consensus       354 ~YG~TE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~--~~--~~g  427 (549)
T PRK07788        354 LYGSTEVAFATIATP-EDLAEAPGTVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPFEGYTDGRDK--QI--IDG  427 (549)
T ss_pred             ccCcchhchhhccCh-hhhhhcCCCcccCCCCcEEEEEC-CCcCCCCCCCeEEEEEeCCCccccccCCCcc--cc--cCC
Confidence            599999986554332 22234567899999999999999 7889999999999999999999999988664  22  468


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.++|+||.||+|+++|++|+|.+||+.+.++|+|.+++|++.+++..++.++++|+..+....+.+
T Consensus       428 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~  507 (549)
T PRK07788        428 LLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDED  507 (549)
T ss_pred             ceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999998888999999998877777889


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHH
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAK  201 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~  201 (206)
                      +++++++++|+.++.|..++++++||+|++||++|++|+++
T Consensus       508 ~l~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~  548 (549)
T PRK07788        508 AIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM  548 (549)
T ss_pred             HHHHHHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence            99999999999999999999999999999999999999753

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.7e-38  Score=271.50  Aligned_cols=202  Identities=33%  Similarity=0.576  Sum_probs=177.4

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeC-CCC---CCCCCCCceEEEEEcCCCCcccCCChhhccccc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCV-DTL---KPLPPNQVGELWVRGPILMPGYFNNEQATKLII   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~-~~~---~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~   76 (206)
                      +||+||++++++.... ......+++|+|+|++.++++.. +++   ++++.|+.|||+|+||+++.||++.+... ..+
T Consensus       364 ~YG~TE~~~~~~~~~~-~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~~~-~~~  441 (632)
T PRK07529        364 GYGLTEATCVSSVNPP-DGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNK-GLW  441 (632)
T ss_pred             eecccccCcccccCCc-cccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcccc-ccc
Confidence            5999999877654432 22446789999999999888642 345   78899999999999999999999865443 334


Q ss_pred             cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCC
Q 043808           77 DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS  156 (206)
Q Consensus        77 ~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  156 (206)
                      ..++||+|||+++++++|.+++.||.+|+|+++|++|+|.+||+.|.++|.|.+++|++.+++..++.++++|++.+...
T Consensus       442 ~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~  521 (632)
T PRK07529        442 LEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGAS  521 (632)
T ss_pred             cCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCC
Confidence            36899999999999999999999999999999999999999999999999999999999999888999999999988777


Q ss_pred             CCHHHHHHHHHHhcc-ccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          157 LTKEDVQKFVVKQVA-RYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       157 ~~~~~l~~~~~~~l~-~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      .+.++++++++++++ .++.|..++++++||+|++||++|++|++++..
T Consensus       522 ~~~~~l~~~~~~~l~~~~~~P~~i~~v~~lP~t~~GKi~r~~Lr~~~~~  570 (632)
T PRK07529        522 ATEAELLAFARDHIAERAAVPKHVRILDALPKTAVGKIFKPALRRDAIR  570 (632)
T ss_pred             CCHHHHHHHHHHhcchhccCCcEEEEecCCCCCCCCcccHHHHHHHHHH
Confidence            888999999999986 579999999999999999999999999988754

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=5.5e-38  Score=262.82  Aligned_cols=203  Identities=32%  Similarity=0.537  Sum_probs=184.4

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++.+.+...  .......++|.|++++.++++|++++++++.|+.|||++++++++.||++++..++..+..++
T Consensus       300 ~YG~tE~~~~~~~~~--~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~  377 (504)
T PRK07514        300 RYGMTETNMNTSNPY--DGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADG  377 (504)
T ss_pred             ecccccccccccCCc--cccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCC
Confidence            499999986654332  123345789999999999999988999999999999999999999999999998888886789


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.++++||.||+|+++|.++++.+||+.+.++++|.++++++.++...++.++++++..+....+.+
T Consensus       378 ~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (504)
T PRK07514        378 FFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEA  457 (504)
T ss_pred             CeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999888778889999998776667789


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      ++++++++.++++++|..+++++++|+|++||++|++|++++++.
T Consensus       458 ~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~~  502 (504)
T PRK07514        458 AILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADL  502 (504)
T ss_pred             HHHHHHHhhcccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999998764

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=3.1e-38  Score=266.99  Aligned_cols=204  Identities=49%  Similarity=0.831  Sum_probs=183.3

Q ss_pred             CcccccCccceeccCCccC---CCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc
Q 043808            1 GYGMTETCGVVTVENPLLG---VQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~---~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~   77 (206)
                      .||+||++++.+.......   .....++|+|+|++.++++|+++++++|.|+.|||+++|+.++.||++++..+...++
T Consensus       335 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~  414 (546)
T PLN02330        335 AYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTID  414 (546)
T ss_pred             cccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCccchhhhcc
Confidence            5999999876543321111   1334689999999999999988899999999999999999999999999988888787


Q ss_pred             CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCC
Q 043808           78 KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL  157 (206)
Q Consensus        78 ~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  157 (206)
                      .++||+|||+++++++|.++++||.+|+++++|++|++.+||+.+.+++.|.+++|++.++...++.++++++..+....
T Consensus       415 ~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~  494 (546)
T PLN02330        415 EDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKE  494 (546)
T ss_pred             CCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999888888899999988766666


Q ss_pred             CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          158 TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       158 ~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      +.+++++++++.|+.++.|..+++++++|+|++||++|++|++++..
T Consensus       495 ~~~~l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~  541 (546)
T PLN02330        495 SEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLS  541 (546)
T ss_pred             CHHHHHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHh
Confidence            77899999999999999999999999999999999999999999864

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-38  Score=274.87  Aligned_cols=196  Identities=23%  Similarity=0.447  Sum_probs=172.5

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++.++.....  ......++|+|++++.++++| +++++++.|+.|||+|+|++++.||+++++.+.   ..++
T Consensus       292 ~YG~tE~~~~~~~~~~--~~~~~~~iG~p~~~~~v~i~d-~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~---~~~~  365 (705)
T PRK06060        292 GIGSTEVGQTFVSNRV--DEWRLGTLGRVLPPYEIRVVA-PDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPV---ANEG  365 (705)
T ss_pred             eeeccccCceEEeccC--CCCCcCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEccchhhhhhhCCCcccc---cCCC
Confidence            5999999876643322  123467899999999999999 678999999999999999999999999887543   3578


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH-
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK-  159 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~-  159 (206)
                      ||+|||+++++++|+++|+||.||+||++|++|++.+||+.+.+++.|.+++|++.++...++.++++++.......+. 
T Consensus       366 ~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~  445 (705)
T PRK06060        366 WLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGS  445 (705)
T ss_pred             cEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChH
Confidence            9999999999999999999999999999999999999999999999999999999988877888999998765543332 


Q ss_pred             --HHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHH
Q 043808          160 --EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKL  202 (206)
Q Consensus       160 --~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~  202 (206)
                        .++++++.+.|+.|++|..++++++||+|++||++|++|++.+
T Consensus       446 ~~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~  490 (705)
T PRK06060        446 VMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS  490 (705)
T ss_pred             HHHHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence              5788899999999999999999999999999999999999865

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=5.7e-38  Score=262.84  Aligned_cols=203  Identities=20%  Similarity=0.288  Sum_probs=163.9

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCC--CceEEEEEcCCC--CcccCCChhhccccc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPN--QVGELWVRGPIL--MPGYFNNEQATKLII   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g--~~Gel~i~~~~~--~~~y~~~~~~~~~~~   76 (206)
                      +||+||++..++..... .....+++|+|+++++++|+| +++++++.|  +.|||++++|.+  +.||++++. +...+
T Consensus       269 ~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~~~~~  345 (499)
T PLN03051        269 YCGGTELASGYISSTLL-QPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-DKVYY  345 (499)
T ss_pred             eeccccccceeeccccc-CCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCcc-cceee
Confidence            59999987654432221 123467899999999999999 788999988  479999999976  579997643 33333


Q ss_pred             cC--------CCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhc-CCCcceeEEEeecCCCCC-ceeE
Q 043808           77 DK--------EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVS-HPEILDAVVIPFPDPEAG-EVPI  146 (206)
Q Consensus        77 ~~--------~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~-~~~v~~~~v~~~~~~~~~-~~~~  146 (206)
                      ++        .+||+|||++++|+||.++|+||.+|+||++|++|+|.+||+.|.+ ||.|.+++|++.+++..+ +.++
T Consensus       346 ~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~  425 (499)
T PLN03051        346 KGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLV  425 (499)
T ss_pred             ecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEE
Confidence            22        2379999999999999999999999999999999999999999996 899999999999998888 6788


Q ss_pred             EEE---EeCCCC-CCCHHHHHHHH----HHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHccC
Q 043808          147 AYV---VRSPNS-SLTKEDVQKFV----VKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI  206 (206)
Q Consensus       147 ~~v---~~~~~~-~~~~~~l~~~~----~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~~  206 (206)
                      ++|   ++.++. ..+.+++++++    +++|+.++.|..++++++||+|++||++|++|++++.+++
T Consensus       426 a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  493 (499)
T PLN03051        426 IFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKKEL  493 (499)
T ss_pred             EEEEcceecccccccchHHHHHHHHHHHHhhcCCccCCceEEEcCCCCCCCCccHHHHHHHHHHHHhh
Confidence            888   665543 34556666655    4557777777789999999999999999999999887653

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.1e-38  Score=262.71  Aligned_cols=201  Identities=35%  Similarity=0.601  Sum_probs=181.6

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++++++...........+++|+|++++.+++.| ++++.++.|..|||+++|++++.||++++..+...+ .++
T Consensus       296 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~  373 (497)
T PRK06145        296 AYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGD  373 (497)
T ss_pred             eecCcccCCcceeccCccccccCCCcccCCCCceEEEEC-CCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHH-hCC
Confidence            599999998776543322233567899999999999999 678999999999999999999999999998887776 578


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.++++||.+|+|+++|+++++.+||+.+.++++|.++++++.+++..++.++++++..+....+..
T Consensus       374 ~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  453 (497)
T PRK06145        374 WFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLE  453 (497)
T ss_pred             CeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999888888889999988766666788


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHH
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLR  203 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~  203 (206)
                      ++.+++++.|++++.|..++++++||+|++||++|++|++++.
T Consensus       454 ~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~  496 (497)
T PRK06145        454 ALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN  496 (497)
T ss_pred             HHHHHHHHhhhcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence            9999999999999999999999999999999999999999875

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.7e-38  Score=267.83  Aligned_cols=200  Identities=37%  Similarity=0.598  Sum_probs=178.1

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEc--CCCCcccCCChhhccccccC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG--PILMPGYFNNEQATKLIIDK   78 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~--~~~~~~y~~~~~~~~~~~~~   78 (206)
                      +||+||++..++..... ....++++|+|+|++.++++| +++..++.|+.|||++++  ++++.||++++..+...+ .
T Consensus       354 ~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~-~  430 (570)
T PRK04319        354 NWWMTETGGIMIANYPA-MDIKPGSMGKPLPGIEAAIVD-DQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYF-A  430 (570)
T ss_pred             ceeecccCCEEEecCCC-CCCCCCcCcCCCCCCEEEEEC-CCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhh-c
Confidence            59999999776543221 234567899999999999999 778888999999999997  889999999999888777 4


Q ss_pred             CCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCC
Q 043808           79 EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLT  158 (206)
Q Consensus        79 ~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  158 (206)
                      ++||+|||+++++++|.++++||.+|+|+++|++|+|.+||+.+.++|.|.+++|++.+++..++.++++++..+.....
T Consensus       431 ~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~  510 (570)
T PRK04319        431 GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPS  510 (570)
T ss_pred             CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCC
Confidence            78999999999999999999999999999999999999999999999999999999999888889999999887654433


Q ss_pred             ---HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHH
Q 043808          159 ---KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLR  203 (206)
Q Consensus       159 ---~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~  203 (206)
                         .+++++++++.|+.++.|..++++++||+|++||++|++|++++.
T Consensus       511 ~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~  558 (570)
T PRK04319        511 EELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWEL  558 (570)
T ss_pred             HHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHh
Confidence               258899999999999999999999999999999999999999864

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=5e-38  Score=265.43  Aligned_cols=197  Identities=25%  Similarity=0.404  Sum_probs=164.5

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccc-ccCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLI-IDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~-~~~~   79 (206)
                      .||+||++.+++..... ......++|+|+++++++++|.+++++++.|+.|||+|+|++++.||++++..+... .+++
T Consensus       331 ~YG~TE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~  409 (539)
T PRK06334        331 GYGTTECSPVITINTVN-SPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGE  409 (539)
T ss_pred             cccccccCceEEeccCC-CCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceeeCCc
Confidence            59999999877654332 223456799999999999999777899999999999999999999999988765432 2457


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcce------eEEEeecCCCCCceeEEEEEeCC
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILD------AVVIPFPDPEAGEVPIAYVVRSP  153 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~------~~v~~~~~~~~~~~~~~~v~~~~  153 (206)
                      +||+|||+++++++|.++|.||.+|+||++|++|+|.+||+.|.++|+|.+      +++++.++.  ...++++++.. 
T Consensus       410 ~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~--~~~~~~~~~~~-  486 (539)
T PRK06334        410 TWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGE--KVRLCLFTTFP-  486 (539)
T ss_pred             eeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCC--ceEEEEEEecc-
Confidence            899999999999999999999999999999999999999999999999987      666665542  22344454421 


Q ss_pred             CCCCCHHHHHHHHHHh-ccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          154 NSSLTKEDVQKFVVKQ-VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       154 ~~~~~~~~l~~~~~~~-l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                         .+.+++++++.+. ++.++.|+.++++++||+|++||++|+.|+++...
T Consensus       487 ---~~~~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  535 (539)
T PRK06334        487 ---TSISEVNDILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALAKS  535 (539)
T ss_pred             ---CChHHHHHHHHhcCCcccccchheeeecccccccCCcccHHHHHHHHHH
Confidence               3467888999886 78899999999999999999999999999988654

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.1e-38  Score=262.22  Aligned_cols=198  Identities=30%  Similarity=0.526  Sum_probs=177.8

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++.++..... .......++|+|++++.++|+| +++++++.|..|||++++++++.||++++..+...+ .++
T Consensus       285 ~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g  361 (487)
T PRK07638        285 FYGASELSFVTALVDE-ESERRPNSVGRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN-ADG  361 (487)
T ss_pred             EecCCccCceEEeccc-ccCCCCCCCCcccCCcEEEEEC-CCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhc-cCC
Confidence            4999999987655432 2345667899999999999999 779999999999999999999999999987766554 678


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.++++||.+|+|+++|.+|+|.+||+.+.++|+|.+++|++.+++..++.+++++..    .....
T Consensus       362 ~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----~~~~~  437 (487)
T PRK07638        362 WMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----SATKQ  437 (487)
T ss_pred             cEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----CCCHH
Confidence            99999999999999999999999999999999999999999999999999999999988778888888763    35678


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      ++++++.+.++.+++|..+++++++|+|++||++|++|++++.++
T Consensus       438 ~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~  482 (487)
T PRK07638        438 QLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQ  482 (487)
T ss_pred             HHHHHHHHHhhcccCCcEEEEecccCCCCcccccHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999998764

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=7.1e-38  Score=259.28  Aligned_cols=190  Identities=29%  Similarity=0.466  Sum_probs=166.6

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      +||+||++..++............++|+|+|+++++++         .|+.|||++++++++.||++++.      +.++
T Consensus       260 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~---------~g~~Gel~v~g~~~~~gY~~~~~------~~~g  324 (452)
T PRK07445        260 TYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---------ANQTGNITIQAQSLALGYYPQIL------DSQG  324 (452)
T ss_pred             CcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc---------CCCcceEEEeCCccchhhcCCcc------CCCC
Confidence            59999998765443322222345689999999999986         36689999999999999997532      2578


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||++++++||+++|.||.||+|+++|++|+|.+||+.+.++|+|.+++|++.+++..++.++++++..+. ..+.+
T Consensus       325 ~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-~~~~~  403 (452)
T PRK07445        325 IFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-SISLE  403 (452)
T ss_pred             EEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC-CCCHH
Confidence            99999999999999999999999999999999999999999999999999999999988888899999887654 45678


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHccC
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI  206 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~~  206 (206)
                      ++++++.+.|+.++.|..++++++||+|++||++|++|++++.++|
T Consensus       404 ~l~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  449 (452)
T PRK07445        404 ELKTAIKDQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQRL  449 (452)
T ss_pred             HHHHHHHHhCCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999998875

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=6.2e-38  Score=266.10  Aligned_cols=200  Identities=31%  Similarity=0.534  Sum_probs=171.5

Q ss_pred             CcccccCccceeccCCccC---------------------CCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcC
Q 043808            1 GYGMTETCGVVTVENPLLG---------------------VQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP   59 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~---------------------~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~   59 (206)
                      .||+||+++.++.......                     .....++|+|+|++++++++.+      .|+.|||+++|+
T Consensus       320 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g~~Gel~v~g~  393 (563)
T PLN02860        320 AYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SSRVGRILTRGP  393 (563)
T ss_pred             CCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC------CCceeEEEEecC
Confidence            5999999876643321110                     1112378999999999998843      578899999999


Q ss_pred             CCCcccCCChhhccccccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCC
Q 043808           60 ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDP  139 (206)
Q Consensus        60 ~~~~~y~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~  139 (206)
                      .++.||+++++.+...+..++||+|||+++++++|.++|+||.+|+|+++|++|+|.+||+.+.++|+|.+++|++.++.
T Consensus       394 ~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~  473 (563)
T PLN02860        394 HVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDS  473 (563)
T ss_pred             cccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecC
Confidence            99999999999888877778999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCceeEEEEEeCCCC--------------CCCHHHHHHHHHH-hccccCceeEEEEe-CCcCCCCCCcccHHHHHHHHH
Q 043808          140 EAGEVPIAYVVRSPNS--------------SLTKEDVQKFVVK-QVARYKRLRNVTFT-NSIPKTTSGKILRRELIAKLR  203 (206)
Q Consensus       140 ~~~~~~~~~v~~~~~~--------------~~~~~~l~~~~~~-~l~~~~~p~~~~~v-~~~P~t~~GKv~r~~l~~~~~  203 (206)
                      ..++.+++++++.++.              ....+++.+++.+ .|++|++|..++++ +.||+|++||++|++|++++.
T Consensus       474 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~~~~  553 (563)
T PLN02860        474 RLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVL  553 (563)
T ss_pred             cCCceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCcccchhHHHHHHHHH
Confidence            8889999999886542              2456788999987 59999999988765 779999999999999999987


Q ss_pred             ccC
Q 043808          204 SKI  206 (206)
Q Consensus       204 ~~~  206 (206)
                      +++
T Consensus       554 ~~~  556 (563)
T PLN02860        554 SHL  556 (563)
T ss_pred             HHH
Confidence            653

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=1.2e-37  Score=263.57  Aligned_cols=202  Identities=32%  Similarity=0.508  Sum_probs=179.4

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++.+++............++|+|++++.++|+| +++++++.|+.|||++++++++.||+++++.+...  .++
T Consensus       343 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~--~~g  419 (547)
T PRK13295        343 AWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD--ADG  419 (547)
T ss_pred             eccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCCCCCCCCCCeEEEEcCcccccccCCccccccC--CCC
Confidence            599999987665443222233456889999999999999 67899999999999999999999999998877654  467


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|++++.||.+|+++++|++|+|.+||+.+.++++|.+++|++.++...++.+++++++.+....+.+
T Consensus       420 ~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~  499 (547)
T PRK13295        420 WFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFE  499 (547)
T ss_pred             CeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999988888899999998776666778


Q ss_pred             HHHHHHHH-hccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          161 DVQKFVVK-QVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       161 ~l~~~~~~-~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      ++.+++.+ .++.++.|..++++++||+|++||++|++|++++.++
T Consensus       500 ~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~~~  545 (547)
T PRK13295        500 EMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRGE  545 (547)
T ss_pred             HHHHHHHhccCccccCCcEEEEeccCCCCCCccccHHHHHHHHhcC
Confidence            99999986 6999999999999999999999999999999988753

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=8.3e-38  Score=264.64  Aligned_cols=205  Identities=25%  Similarity=0.438  Sum_probs=168.3

Q ss_pred             CcccccCccceeccCCc------c--CCCCCCcceeecCCceEEEEeCC--------CCCCCCCCCceEEEEEcCCCCcc
Q 043808            1 GYGMTETCGVVTVENPL------L--GVQNSGSAGRLVAGVEAQIVCVD--------TLKPLPPNQVGELWVRGPILMPG   64 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~------~--~~~~~~~~G~p~~~~~~~i~~~~--------~~~~~~~g~~Gel~i~~~~~~~~   64 (206)
                      .||+||++++++.....      .  ......++|+|+|+++++|+|+.        +++.++.|+.|||+++|++++.|
T Consensus       321 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~G  400 (552)
T PRK09274        321 PYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRS  400 (552)
T ss_pred             cccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecCccccc
Confidence            59999999876543221      0  01123478999999999999852        46789999999999999999999


Q ss_pred             cCCChhhccccc--cCCC--eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCC
Q 043808           65 YFNNEQATKLII--DKEG--WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPE  140 (206)
Q Consensus        65 y~~~~~~~~~~~--~~~~--~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~  140 (206)
                      |++++..+...+  +.++  ||+|||+++++++|.++++||.+|+|+++|.+|+|.+||+.+.++|+|.++++++.+++.
T Consensus       401 Y~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~  480 (552)
T PRK09274        401 YYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVPG  480 (552)
T ss_pred             ccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCCC
Confidence            999998876543  3455  999999999999999999999999999999999999999999999999999999987753


Q ss_pred             CCceeEEEEEeCCCCCCCHHHHHHHHHHhccc---cCceeEEEEeCCcCCC--CCCcccHHHHHHHHHccC
Q 043808          141 AGEVPIAYVVRSPNSSLTKEDVQKFVVKQVAR---YKRLRNVTFTNSIPKT--TSGKILRRELIAKLRSKI  206 (206)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~---~~~p~~~~~v~~~P~t--~~GKv~r~~l~~~~~~~~  206 (206)
                       ++.++++|++.+....+.+++.+.+++.+..   ++.|..++++++||+|  ++||++|++|++++.+++
T Consensus       481 -~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~~~~  550 (552)
T PRK09274        481 -AQRPVLCVELEPGVACSKSALYQELRALAAAHPHTAGIERFLIHPSFPVDIRHNAKIFREKLAVWAAKQL  550 (552)
T ss_pred             -CceEEEEEEccCccccchHHHhhhhHHHHHhcCCCcceeEEeccCCCCccccccccccHHHHHHHHHHhh
Confidence             5677888887766555555566666655554   4567889999999998  799999999999988753

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.4e-38  Score=266.06  Aligned_cols=204  Identities=36%  Similarity=0.600  Sum_probs=184.3

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCC-CCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDT-LKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~-~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~   79 (206)
                      .||+||++++++.... .....++++|+|++++.++|+|+++ ++.++.|..|||+++++.++.||++++..+...| .+
T Consensus       367 ~YG~TE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~  444 (573)
T PRK05605        367 GYGLTETSPIIVGNPM-SDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSF-LD  444 (573)
T ss_pred             ccccchhchhhhcCCc-ccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcc-cC
Confidence            5999999987765432 2234567899999999999999666 6889999999999999999999999998887777 45


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK  159 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (206)
                      +||+|||+++++++|.++++||.||+++++|++++|.+||+.+.+++.|.++++++.++...++.+++++++.+....+.
T Consensus       445 g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~  524 (573)
T PRK05605        445 GWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDP  524 (573)
T ss_pred             CCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCCH
Confidence            79999999999999999999999999999999999999999999999999999999988888889999999887777788


Q ss_pred             HHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHccC
Q 043808          160 EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI  206 (206)
Q Consensus       160 ~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~~  206 (206)
                      ++|++++++.|+.++.|..++++++||+|++||++|++|++++.+++
T Consensus       525 ~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~~~~~  571 (573)
T PRK05605        525 EGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRRREVREELLEKL  571 (573)
T ss_pred             HHHHHHHHHhCccccCCcEEEEeccCCCCCcccccHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999998764

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.8e-38  Score=262.48  Aligned_cols=204  Identities=37%  Similarity=0.616  Sum_probs=185.4

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++.+++...........+++|+|++++.++|.| ++++.++.|+.|||+++|+.++.+|++++..+...+ .++
T Consensus       318 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~  395 (523)
T PRK08316        318 CYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGG  395 (523)
T ss_pred             eecccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHh-hCC
Confidence            499999998876654333334567899999999999999 678999999999999999999999999988887777 689


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.++++||.+|+++++|++++|.+||+.+.+++++.++++++.+++..++.++++++..+......+
T Consensus       396 ~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  475 (523)
T PRK08316        396 WFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTED  475 (523)
T ss_pred             CeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999988888899999998766667778


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHccC
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI  206 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~~  206 (206)
                      ++.+++++.++.++.|..+++++++|+|++||++|++|+++|.+.+
T Consensus       476 ~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~~  521 (523)
T PRK08316        476 ELIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGAF  521 (523)
T ss_pred             HHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999998753

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.1e-37  Score=264.21  Aligned_cols=205  Identities=37%  Similarity=0.587  Sum_probs=184.3

Q ss_pred             CcccccCccceeccCCcc-CCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808            1 GYGMTETCGVVTVENPLL-GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~   79 (206)
                      .||+||++.+++...... ......++|+|++++.++++|+++++.++.|+.|||++++++++.||++++..++..++.+
T Consensus       347 ~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~  426 (559)
T PRK08315        347 AYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDAD  426 (559)
T ss_pred             EEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCC
Confidence            499999998776543221 2345678999999999999997779999999999999999999999999998888777678


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK  159 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (206)
                      +||+|||+++++++|.++++||.+|+++++|+++++.+||+.+.++++|.+++|++.+++..++.++++|+.......+.
T Consensus       427 ~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  506 (559)
T PRK08315        427 GWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTE  506 (559)
T ss_pred             CCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999988877788889888876666778


Q ss_pred             HHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          160 EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       160 ~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      .++++++.+.++.++.|..+++++++|+|++||++|.+|++++.+.
T Consensus       507 ~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r~~L~~~~~~~  552 (559)
T PRK08315        507 EDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEE  552 (559)
T ss_pred             HHHHHHHHhhcccccCCcEEEEcccCCCCCCCceeHHHHHHHHHhh
Confidence            8999999999999999999999999999999999999999987653

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-37  Score=262.39  Aligned_cols=203  Identities=33%  Similarity=0.589  Sum_probs=180.9

Q ss_pred             CcccccCccceeccCCc------cCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccc
Q 043808            1 GYGMTETCGVVTVENPL------LGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKL   74 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~------~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~   74 (206)
                      .||+||+++.++.....      ......+++|+|++++.++++| +++++++.|+.|||+++|+.++.||++++..+..
T Consensus       311 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~  389 (528)
T PRK07470        311 YFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGPAVFAGYYNNPEANAK  389 (528)
T ss_pred             hCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhhcCCHHHHHh
Confidence            59999998776543211      0123457889999999999999 6889999999999999999999999999888877


Q ss_pred             cccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC
Q 043808           75 IIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN  154 (206)
Q Consensus        75 ~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  154 (206)
                      .+ .++||+|||+++++++|+++++||.||+++++|++++|.+||+.+..++.|.+++|++.+++..++..+++++..+.
T Consensus       390 ~~-~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~  468 (528)
T PRK07470        390 AF-RDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDG  468 (528)
T ss_pred             hh-cCCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCC
Confidence            66 57899999999999999999999999999999999999999999999999999999999888777888888887766


Q ss_pred             CCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          155 SSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       155 ~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      ...+.+++++++.+.|+.+++|..++++++||+|++||++|+.|+++++++
T Consensus       469 ~~~~~~~~~~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~  519 (528)
T PRK07470        469 APVDEAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEER  519 (528)
T ss_pred             CCCCHHHHHHHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhc
Confidence            567788999999999999999999999999999999999999999998764

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-37  Score=262.37  Aligned_cols=203  Identities=33%  Similarity=0.550  Sum_probs=178.2

Q ss_pred             CcccccCccceeccCCcc---CCCCCCcceee--cCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccc
Q 043808            1 GYGMTETCGVVTVENPLL---GVQNSGSAGRL--VAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLI   75 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~---~~~~~~~~G~p--~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~   75 (206)
                      +||+||++..++......   ......++|.+  .+++.++++| ++++.++.|+.|||+++|+.++.||+++++.+...
T Consensus       326 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~  404 (534)
T PRK05852        326 AFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVG-SDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAAN  404 (534)
T ss_pred             ccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEEC-CCCCCCCCCCceEEEEecCcccchhcCCcccchhh
Confidence            599999997765432210   01111234444  7999999999 67899999999999999999999999999988777


Q ss_pred             ccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCC
Q 043808           76 IDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS  155 (206)
Q Consensus        76 ~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  155 (206)
                      + .++||+|||++++++||++++.||.+|+|+++|.+++|.+||+.+.++++|.+++|++.++...++.++++++..+..
T Consensus       405 ~-~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~  483 (534)
T PRK05852        405 F-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESA  483 (534)
T ss_pred             h-cCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCC
Confidence            7 578999999999999999999999999999999999999999999999999999999999888888899999887666


Q ss_pred             CCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          156 SLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       156 ~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      ..+.+++.++++++|+.+++|..++++++||+|++||++|++|++++.++
T Consensus       484 ~~~~~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~~  533 (534)
T PRK05852        484 PPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGHS  533 (534)
T ss_pred             CCCHHHHHHHHHHhcccccCCeEEEEhhhcCCCCCccccHHHHHHHhccc
Confidence            67789999999999999999999999999999999999999999999875

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3e-37  Score=261.39  Aligned_cols=204  Identities=33%  Similarity=0.542  Sum_probs=183.7

Q ss_pred             CcccccCccceeccCCc-cCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808            1 GYGMTETCGVVTVENPL-LGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~   79 (206)
                      .||+||++.+++..... .......++|+|++++.++++|++ ++.++.|..|||+++++.++.||++++..+...++.+
T Consensus       349 ~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~  427 (558)
T PRK12583        349 AYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDED  427 (558)
T ss_pred             cccccccccceeccCcccccccccCCCCccCCCCeEEEECCC-CCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCC
Confidence            59999999887654321 123346789999999999999955 8999999999999999999999999998887777678


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK  159 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (206)
                      +||+|||+++++++|.+++.||.+|+++++|.+|+|.+||+.+..++.|.++++++.++...++.++++++..+....+.
T Consensus       428 ~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  507 (558)
T PRK12583        428 GWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASE  507 (558)
T ss_pred             CCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999988877888999998877666778


Q ss_pred             HHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          160 EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       160 ~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      .++++++++.|+.++.|..+++++++|+|++||++|+.|++++.++
T Consensus       508 ~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~~~~~  553 (558)
T PRK12583        508 EELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIEE  553 (558)
T ss_pred             HHHHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHHHHHHHHHhh
Confidence            8999999999999999999999999999999999999999987765

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-37  Score=258.75  Aligned_cols=203  Identities=33%  Similarity=0.532  Sum_probs=182.0

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCC-CceEEEEEcC---CCCcccCCChhhcc-cc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPN-QVGELWVRGP---ILMPGYFNNEQATK-LI   75 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g-~~Gel~i~~~---~~~~~y~~~~~~~~-~~   75 (206)
                      .||+||+|.+++.........++++.+.|++++.+.|.| ++|+.++.+ ..|+|+++.+   +++++++++++... ..
T Consensus       391 ~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~y  469 (626)
T KOG1175|consen  391 TYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAY  469 (626)
T ss_pred             ceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhh
Confidence            489999999998776543368899999999999999999 689998886 8899999985   67999999988443 33


Q ss_pred             cc-CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC
Q 043808           76 ID-KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN  154 (206)
Q Consensus        76 ~~-~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  154 (206)
                      |. ..+||.|||.+++|+||+++++||.||+|+++|+++++.+||+++.+||.|.|++|++.+++..|+.+.+||++.++
T Consensus       470 f~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g  549 (626)
T KOG1175|consen  470 FKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSG  549 (626)
T ss_pred             cccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCC
Confidence            32 37899999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCC---HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          155 SSLT---KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       155 ~~~~---~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ....   .++|++++++.+.++..|+.|.++..||+|.+||+.|+.|++.+..
T Consensus       550 ~~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g  602 (626)
T KOG1175|consen  550 SHDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASG  602 (626)
T ss_pred             CCChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHHHhcc
Confidence            5443   3588889999999999999999999999999999999999998764

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=3.1e-37  Score=261.72  Aligned_cols=198  Identities=36%  Similarity=0.632  Sum_probs=177.6

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      +||+||++.+++..... .....+++|+|++++.++|+| +++++++.|+.|||+++|+.++.||+++++.+...++.++
T Consensus       364 ~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g  441 (562)
T PRK12492        364 GYGLTETSPVASTNPYG-ELARLGTVGIPVPGTALKVID-DDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEG  441 (562)
T ss_pred             ccCccccCceeeecCCc-ccccCCccceecCCCEEEEEC-CCCCCCCCCCceEEEEeCCccccccccCchhhhhcccCCC
Confidence            59999999877644321 233457899999999999999 6889999999999999999999999999998888776789


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.+++.||.+|+++++|++++|.+||+.+.+++.|.++++++.++...++.++++++.... ..+.+
T Consensus       442 ~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~~~~  520 (562)
T PRK12492        442 WFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDP-GLSVE  520 (562)
T ss_pred             ceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCC-CCCHH
Confidence            99999999999999999999999999999999999999999999999999999999887778888888876543 45678


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHH
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAK  201 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~  201 (206)
                      ++++++.++++.+..|..+.++++||+|++||++|++|+++
T Consensus       521 ~i~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~~~  561 (562)
T PRK12492        521 ELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDI  561 (562)
T ss_pred             HHHHHHHHhcccccCCcEEEEeccCCCCCCCceeHHHHHhh
Confidence            99999999999999999999999999999999999999875

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.3e-37  Score=262.22  Aligned_cols=197  Identities=28%  Similarity=0.468  Sum_probs=163.4

Q ss_pred             CcccccCccceeccCCcc-------------CCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCC
Q 043808            1 GYGMTETCGVVTVENPLL-------------GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFN   67 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~-------------~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~   67 (206)
                      +||+||++.+++......             ......++|+|+|+++++|+|.+.+..+|.|+.|||+++|++++.||++
T Consensus       309 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~  388 (525)
T PRK05851        309 SYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLG  388 (525)
T ss_pred             ccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhcccc
Confidence            599999987765432210             1123467999999999999996555678999999999999999999999


Q ss_pred             ChhhccccccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEE
Q 043808           68 NEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIA  147 (206)
Q Consensus        68 ~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~  147 (206)
                      ++..+     .++||+|||+++++ +|.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++...+
T Consensus       389 ~~~~~-----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~  462 (525)
T PRK05851        389 QAPID-----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGL  462 (525)
T ss_pred             CCccC-----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeE
Confidence            87532     47899999999986 7999999999999999999999999999999999999999999988777766666


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHhcccc--CceeEEEEeC--CcCCCCCCcccHHHHHHHHHc
Q 043808          148 YVVRSPNSSLTKEDVQKFVVKQVARY--KRLRNVTFTN--SIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~~~~l~~~--~~p~~~~~v~--~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      +++... ...+.+++.+++.+.++.+  +.|..+++++  +||+|++||++|++|++.+++
T Consensus       463 ~v~~~~-~~~~~~~~~~~~~~~l~~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~~~  522 (525)
T PRK05851        463 VIAAEF-RGPDEAGARSEVVQRVASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSLEA  522 (525)
T ss_pred             EEEEEe-cCcchHHHHHHHHHHHHHHhCCCccEEEEECCCCcCcCcchHHHHHHHHHHHHh
Confidence            655431 2234566777788778777  8999999998  899999999999999998864

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=3e-37  Score=260.88  Aligned_cols=197  Identities=35%  Similarity=0.513  Sum_probs=179.6

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcC---CCCcccCCChhhcccccc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP---ILMPGYFNNEQATKLIID   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~---~~~~~y~~~~~~~~~~~~   77 (206)
                      .||+||++.+++...   ....++++|.|++++.++|+| ++++++|.|..|||+++++   +++.||++++..+...+ 
T Consensus       323 ~YG~tE~~~~~~~~~---~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-  397 (542)
T PRK06155        323 GYGSTETNFVIAVTH---GSQRPGSMGRLAPGFEARVVD-EHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-  397 (542)
T ss_pred             eecccccCccccCCC---CCCCCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh-
Confidence            499999998765432   234677899999999999999 6799999999999999998   68999999988887766 


Q ss_pred             CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCC
Q 043808           78 KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL  157 (206)
Q Consensus        78 ~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  157 (206)
                      .++||+|||+++++++|.++++||.+|+|+++|.+++|.+||+.+.++++|.+++|++.++...++.+.++++.......
T Consensus       398 ~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~  477 (542)
T PRK06155        398 RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTAL  477 (542)
T ss_pred             cCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999888778888888888777777


Q ss_pred             CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHH
Q 043808          158 TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKL  202 (206)
Q Consensus       158 ~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~  202 (206)
                      +..++++++.+.++.++.|..+++++++|+|++||++|++|++++
T Consensus       478 ~~~~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~  522 (542)
T PRK06155        478 EPVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQG  522 (542)
T ss_pred             CHHHHHHHHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhc
Confidence            889999999999999999999999999999999999999999865

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1e-37  Score=267.91  Aligned_cols=180  Identities=28%  Similarity=0.463  Sum_probs=158.6

Q ss_pred             CcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc-----------------CCCeEecCc
Q 043808           24 GSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID-----------------KEGWLHTGD   86 (206)
Q Consensus        24 ~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~-----------------~~~~~~TGD   86 (206)
                      .++|+|++++.++++|+++++++|.|+.|||+++||+++.||+++++.+++.|.                 .++||+|||
T Consensus       391 ~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGD  470 (631)
T PRK07769        391 VSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGD  470 (631)
T ss_pred             EeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccc
Confidence            478999999999999988899999999999999999999999999988876652                 248999999


Q ss_pred             eEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhc-CCCcce--eEEEeecC-------------------CCCCce
Q 043808           87 LGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVS-HPEILD--AVVIPFPD-------------------PEAGEV  144 (206)
Q Consensus        87 l~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~-~~~v~~--~~v~~~~~-------------------~~~~~~  144 (206)
                      ++++ ++|.++|+||.+|+||++|++|+|.+||+.+.+ +|.|.+  ++|++.++                   +..++.
T Consensus       471 lg~~-~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~  549 (631)
T PRK07769        471 YGVY-FDGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQ  549 (631)
T ss_pred             cccE-ECCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCcc
Confidence            9999 599999999999999999999999999999996 799998  88888887                   456788


Q ss_pred             eEEEEEeCCC-CCCCHHHHHHHHHHhccc-cC-ceeEEEEeC--CcCCCCCCcccHHHHHHHHHc
Q 043808          145 PIAYVVRSPN-SSLTKEDVQKFVVKQVAR-YK-RLRNVTFTN--SIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       145 ~~~~v~~~~~-~~~~~~~l~~~~~~~l~~-~~-~p~~~~~v~--~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      +++++++.+. ...+.++|.+++++.+.. ++ .|+.++++.  +||+|++||++|++|++.+.+
T Consensus       550 ~~a~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~  614 (631)
T PRK07769        550 LVIVAERAPGAHKLDPQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLD  614 (631)
T ss_pred             EEEEEEecCccccccHHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHc
Confidence            9999988765 346778999999999995 55 487888886  799999999999999998764

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.2e-37  Score=261.87  Aligned_cols=202  Identities=36%  Similarity=0.611  Sum_probs=179.4

Q ss_pred             CcccccCccceeccCCcc-----CCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccc
Q 043808            1 GYGMTETCGVVTVENPLL-----GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLI   75 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~-----~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~   75 (206)
                      .||+||++..++......     ....+.++|+|+|+++++++|++++++++.|+.|||+++|++++.||++++..+...
T Consensus       359 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~  438 (567)
T PRK06178        359 AWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEA  438 (567)
T ss_pred             ccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhc
Confidence            499999987665432111     123456799999999999999888999999999999999999999999999888776


Q ss_pred             ccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCC
Q 043808           76 IDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS  155 (206)
Q Consensus        76 ~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  155 (206)
                      + .+|||+|||+++++++|+++++||.+|+|+++|.++++.+||+.+.++++|.++++++.++...++.++++++.....
T Consensus       439 ~-~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~  517 (567)
T PRK06178        439 L-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGA  517 (567)
T ss_pred             c-cCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCC
Confidence            6 568999999999999999999999999999999999999999999999999999999988877778889999887666


Q ss_pred             CCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          156 SLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       156 ~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ..+.+++++++++.++.++.|. +++++++|+|++||++|+.|++++++
T Consensus       518 ~~~~~~l~~~~~~~l~~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~  565 (567)
T PRK06178        518 DLTAAALQAWCRENMAVYKVPE-IRIVDALPMTATGKVRKQDLQALAEE  565 (567)
T ss_pred             cCCHHHHHHHHHhcCcccCCce-EEEeccCCCCCccceeHHHHHHHHHh
Confidence            6678899999999999999997 88899999999999999999999875

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.2e-37  Score=264.81  Aligned_cols=204  Identities=27%  Similarity=0.368  Sum_probs=173.9

Q ss_pred             CcccccCccceeccCC--ccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcC---CCCcccCCChhhcccc
Q 043808            1 GYGMTETCGVVTVENP--LLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP---ILMPGYFNNEQATKLI   75 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~--~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~---~~~~~y~~~~~~~~~~   75 (206)
                      .||+||++..++....  ......++++|+|++++.++|+|++++++++.|..|||++++|   ..+.+|+++++.+...
T Consensus       386 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~  465 (629)
T PRK10524        386 NYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKT  465 (629)
T ss_pred             ccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHh
Confidence            5999999854432221  1123446789999999999999955899999999999999998   4778999988765433


Q ss_pred             c---cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeC
Q 043808           76 I---DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRS  152 (206)
Q Consensus        76 ~---~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  152 (206)
                      +   ..++||+|||+++++++|.++++||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.+++++++.
T Consensus       466 ~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~  545 (629)
T PRK10524        466 YWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPK  545 (629)
T ss_pred             hhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEEC
Confidence            2   1468999999999999999999999999999999999999999999999999999999999988889999999987


Q ss_pred             CCCCC--------CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          153 PNSSL--------TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       153 ~~~~~--------~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      +....        ..+++++++++.|+.++.|..+++++.||+|++||++|+.|++.+..
T Consensus       546 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~  605 (629)
T PRK10524        546 DSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEG  605 (629)
T ss_pred             CCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence            54322        24678899999999999999999999999999999999999988653

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.1e-37  Score=261.56  Aligned_cols=194  Identities=35%  Similarity=0.593  Sum_probs=172.7

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      +||+||++.+++.... .....++++|+|++++.++++| ++++++|.|..|||++++++++.||+  +..+...  .++
T Consensus       343 ~YG~TE~~~~~~~~~~-~~~~~~~~vG~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~~~--~~g  416 (537)
T PRK13382        343 NYNATEAGMIATATPA-DLRAAPDTAGRPAEGTEIRILD-QDFREVPTGEVGTIFVRNDTQFDGYT--SGSTKDF--HDG  416 (537)
T ss_pred             cccccccCcceecChh-HhccCCCCccccCcCcEEEEEC-CCCCCCCCCCeeEEEEEcCCcccCcc--ccchhhc--cCC
Confidence            5999999987654322 1234568999999999999999 67899999999999999999999998  3334332  368


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.++|.||.||+||++|++|++.+||..+.++++|.+++|++.++...++.++++|++.+......+
T Consensus       417 ~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~  496 (537)
T PRK13382        417 FMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPE  496 (537)
T ss_pred             CEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999988888899999998776667788


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHH
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIA  200 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~  200 (206)
                      ++++++++.|+.++.|..+++++++|+|++||++|++|++
T Consensus       497 ~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~  536 (537)
T PRK13382        497 TLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQA  536 (537)
T ss_pred             HHHHHHHHhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence            9999999999999999999999999999999999999864

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.9e-37  Score=260.12  Aligned_cols=202  Identities=41%  Similarity=0.678  Sum_probs=179.0

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc---c
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII---D   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~---~   77 (206)
                      .||+||++..++.....  .....++|+|++++.++++|+++++.++.|..|||++++++++.||++++..++..|   +
T Consensus       336 ~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~  413 (546)
T PRK08314        336 GYGLTETMAQTHSNPPD--RPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEID  413 (546)
T ss_pred             cccccccccceecCCCc--CCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhhhhcC
Confidence            59999998776544322  234578999999999999998889999999999999999999999999988776655   3


Q ss_pred             CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCC--
Q 043808           78 KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS--  155 (206)
Q Consensus        78 ~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--  155 (206)
                      +.+||+|||+++++++|.+++.||.||+++++|++|+|.+||+.+.++++|.+++|++.++...++.++++++..+..  
T Consensus       414 ~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~  493 (546)
T PRK08314        414 GKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARG  493 (546)
T ss_pred             CCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCC
Confidence            456999999999999999999999999999999999999999999999999999999998888888999999887653  


Q ss_pred             CCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          156 SLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       156 ~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ..+.+++++++++.|+.++.|..++++++||+|++||++|+.|++..+.
T Consensus       494 ~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~~~~  542 (546)
T PRK08314        494 KTTEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEKA  542 (546)
T ss_pred             CCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHhh
Confidence            2456899999999999999999999999999999999999999877553

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=2.4e-37  Score=266.35  Aligned_cols=200  Identities=20%  Similarity=0.286  Sum_probs=171.3

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcC--CCCcccCCChhhcc---cc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP--ILMPGYFNNEQATK---LI   75 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~--~~~~~y~~~~~~~~---~~   75 (206)
                      .||+||++..+...... .....+++|.|.+++.++++| +++++++ |+.|||++++|  +++.|||++++.++   ..
T Consensus       417 ~yG~TE~~~~~~~~~~~-~~~~~g~~g~p~~g~~v~ivd-~~g~~~~-g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~  493 (652)
T TIGR01217       417 ISGGTDICSCFAGANPT-LPVHIGEIQAPGLGTAVQSWD-PEGKPVT-GEVGELVCTNPMPSMPIRFWNDPDGSKYRDAY  493 (652)
T ss_pred             ccCHHHHhccccCCCCC-CCCcCCccCCCcCCCceEEEC-CCCCCCC-CCccEEEEecCCCccccceeCCCccchhHHhh
Confidence            49999975444322221 233457889999999999999 7788884 89999999996  58899999987543   22


Q ss_pred             cc-CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC
Q 043808           76 ID-KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN  154 (206)
Q Consensus        76 ~~-~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  154 (206)
                      ++ .++||+|||++++++||.++++||.||+|+++|++|+|.+||+.|.++|.|.+++|++.+++..++.+++||++.++
T Consensus       494 ~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~  573 (652)
T TIGR01217       494 FDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPG  573 (652)
T ss_pred             hcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCC
Confidence            32 26899999999999999999999999999999999999999999999999999999999999889999999998766


Q ss_pred             CCCCH---HHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHH
Q 043808          155 SSLTK---EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLR  203 (206)
Q Consensus       155 ~~~~~---~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~  203 (206)
                      ...+.   +++++++++.|++++.|+.++++++||+|++||++|+.|++.+.
T Consensus       574 ~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~  625 (652)
T TIGR01217       574 ATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQ  625 (652)
T ss_pred             CCCCHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccChHHHHHHHHc
Confidence            54443   58999999999999999999999999999999999999999874

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5e-37  Score=259.23  Aligned_cols=204  Identities=26%  Similarity=0.420  Sum_probs=179.6

Q ss_pred             CcccccCccceeccCCccC-CCCCCcceeec-CCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccC
Q 043808            1 GYGMTETCGVVTVENPLLG-VQNSGSAGRLV-AGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDK   78 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~-~~~~~~~G~p~-~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~   78 (206)
                      .||+||++.+++....... .....+.|.|+ +++.++++|++++++++.|+.|||+++|++++.||++++..+...+..
T Consensus       325 ~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~  404 (540)
T PRK06164        325 LYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTD  404 (540)
T ss_pred             ceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhcccC
Confidence            5999999987765533211 12234567775 889999999889999999999999999999999999999999888878


Q ss_pred             CCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCC
Q 043808           79 EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLT  158 (206)
Q Consensus        79 ~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  158 (206)
                      ++||+|||+++++++|.+++.||.+|+++++|++++|.+||+.+.++++|.++++++.+. ..+..++++++..+....+
T Consensus       405 ~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~-~~~~~~~~~vv~~~~~~~~  483 (540)
T PRK06164        405 DGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR-DGKTVPVAFVIPTDGASPD  483 (540)
T ss_pred             CCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC-CCceeEEEEEEeCCCCCCC
Confidence            899999999999999999999999999999999999999999999999999999998873 3456788888887666677


Q ss_pred             HHHHHHHHHHhccccCceeEEEEeCCcCCCCCC---cccHHHHHHHHHcc
Q 043808          159 KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSG---KILRRELIAKLRSK  205 (206)
Q Consensus       159 ~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~G---Kv~r~~l~~~~~~~  205 (206)
                      .+++.+++++.++.++.|..+++++.+|+|++|   |++|+.|++++.+.
T Consensus       484 ~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~  533 (540)
T PRK06164        484 EAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQAR  533 (540)
T ss_pred             HHHHHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHh
Confidence            899999999999999999999999999999999   99999999987764

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=4.4e-37  Score=256.13  Aligned_cols=199  Identities=39%  Similarity=0.704  Sum_probs=177.2

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++..++...........+++|+|++++.+++.+ + +++++.|..|||+++||+++.||++++..+...+ .++
T Consensus       284 ~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~-~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~  360 (483)
T PRK03640        284 SYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK-D-GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDG  360 (483)
T ss_pred             eeccCcccccccccCcccccccCCCcccccCCcEEEEec-C-CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH-hcC
Confidence            599999987654444333345678999999999999988 3 4889999999999999999999999998887777 678


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.+++.||.+|+++++|.++++.+||+.+.+++++.++++++..+...+..++++++..  ...+.+
T Consensus       361 ~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~  438 (483)
T PRK03640        361 WFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKS--GEVTEE  438 (483)
T ss_pred             CeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeC--CCCCHH
Confidence            999999999999999999999999999999999999999999999999999999888877777787877743  456778


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ++++++.+.|+.+++|..+++++++|+|++||++|++|++++++
T Consensus       439 ~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~~  482 (483)
T PRK03640        439 ELRHFCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEE  482 (483)
T ss_pred             HHHHHHHHhccCCCCCcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999875

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4e-37  Score=265.26  Aligned_cols=201  Identities=22%  Similarity=0.307  Sum_probs=172.2

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcC--CCCcccCCChhhcc---cc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP--ILMPGYFNNEQATK---LI   75 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~--~~~~~y~~~~~~~~---~~   75 (206)
                      .||+||+++.+...... ....++++|.|+++++++|+| ++++++ .|+.|||+|++|  +++.||+++++.++   ..
T Consensus       416 ~yG~TE~~~~~~~~~~~-~~~~~g~~g~p~~g~~~~ivd-~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~  492 (655)
T PRK03584        416 ISGGTDICSCFVGGNPL-LPVYRGEIQCRGLGMAVEAWD-EDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAY  492 (655)
T ss_pred             ccChHhhhcccccCCCC-CCcCCCccCCCcCCceeEEEC-CCCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhh
Confidence            49999986554332221 234567899999999999999 778888 789999999996  78999999886442   11


Q ss_pred             cc-CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC
Q 043808           76 ID-KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN  154 (206)
Q Consensus        76 ~~-~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  154 (206)
                      +. ..+||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..++.+++||++.+.
T Consensus       493 ~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~  572 (655)
T PRK03584        493 FDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEG  572 (655)
T ss_pred             hccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCC
Confidence            21 25799999999999999999999999999999999999999999999999999999999998888999999998766


Q ss_pred             CCCCH---HHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          155 SSLTK---EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       155 ~~~~~---~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ...+.   +++++++++.|++++.|..++++++||+|++||++|+.|++++..
T Consensus       573 ~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~~  625 (655)
T PRK03584        573 VTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKVELPVKKLLHG  625 (655)
T ss_pred             CCCcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccchHHHHHHHHcC
Confidence            54443   588999999999999999999999999999999999999998754

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.8e-37  Score=260.06  Aligned_cols=202  Identities=40%  Similarity=0.700  Sum_probs=182.3

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++.+++..... ....++++|+|++++.+++++++++++++.|..|||+++++.++.||+++++.+...+ .++
T Consensus       354 ~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g  431 (563)
T PRK06710        354 GYGLTESSPVTHSNFLW-EKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDG  431 (563)
T ss_pred             ccccccCccccccCccc-ccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccchhhhCChHHHhhhc-ccC
Confidence            59999999865433221 2334578999999999999998889999999999999999999999999998887776 578


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.++++||.||+|+++|.+|+|.+||+.+.+++.|.+++|++.++...++.++++++..+....+.+
T Consensus       432 ~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~  511 (563)
T PRK06710        432 WLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEE  511 (563)
T ss_pred             cccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999988888899999988777667788


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ++++++++.++.++.|..++++++||+|++||++|+.|++++..
T Consensus       512 ~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~  555 (563)
T PRK06710        512 ELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKR  555 (563)
T ss_pred             HHHHHHHHhcccccCCcEEEEcccCCCCccchhhHHHHHHHHhh
Confidence            99999999999999999999999999999999999999998764

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=3.7e-37  Score=258.70  Aligned_cols=197  Identities=34%  Similarity=0.585  Sum_probs=178.9

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEc---CCCCcccCCChhhcccccc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG---PILMPGYFNNEQATKLIID   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~---~~~~~~y~~~~~~~~~~~~   77 (206)
                      .||+||++..++..... ......++|+|++++.++++| ++++.++.|..|||+++|   ++++.||+++++.+.+.+.
T Consensus       318 ~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~  395 (517)
T PRK08008        318 SYGMTETIVGIIGDRPG-DKRRWPSIGRPGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLE  395 (517)
T ss_pred             eccccccccccccCCcc-ccccCCccccCCCCcEEEEEC-CCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhccc
Confidence            59999998766544332 234557899999999999999 789999999999999998   5899999999999988887


Q ss_pred             CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCC
Q 043808           78 KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL  157 (206)
Q Consensus        78 ~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  157 (206)
                      .++||+|||+++++++|.++++||.+|+|+++|++++|.+||+.+.+++.|.+++|++.++...++.+.++|++.+....
T Consensus       396 ~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~  475 (517)
T PRK08008        396 ADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETL  475 (517)
T ss_pred             CCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCC
Confidence            78999999999999999999999999999999999999999999999999999999999988888889999998877777


Q ss_pred             CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHH
Q 043808          158 TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELI  199 (206)
Q Consensus       158 ~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~  199 (206)
                      +.+++..++++.++.+++|..+++++++|+|++||++|+.|+
T Consensus       476 ~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~  517 (517)
T PRK08008        476 SEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK  517 (517)
T ss_pred             CHHHHHHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence            788999999999999999999999999999999999999874

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.1e-37  Score=257.24  Aligned_cols=197  Identities=28%  Similarity=0.473  Sum_probs=176.1

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCC------------ceEEEE-EcCCCCcccCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQ------------VGELWV-RGPILMPGYFN   67 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~------------~Gel~i-~~~~~~~~y~~   67 (206)
                      .||+||++..++...    ....+++|.|+++  ++++++++++.++.|.            .|||++ ++++++.||++
T Consensus       296 ~YG~TE~~~~~~~~~----~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~  369 (529)
T PRK07867        296 GFGSTEGGVAITRTP----DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYN  369 (529)
T ss_pred             eecccccccccccCC----CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccC
Confidence            499999986654321    2245678999999  6777877888899888            899999 99999999999


Q ss_pred             ChhhccccccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEE
Q 043808           68 NEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIA  147 (206)
Q Consensus        68 ~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~  147 (206)
                      ++..+...+ .++||+|||+++++++|.+++.||.+|+++++|++++|.+||+.+.++|+|.+++|++.+++..++.+++
T Consensus       370 ~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a  448 (529)
T PRK07867        370 DPEADAERM-RGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMA  448 (529)
T ss_pred             ChHhhhhhh-cCCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEE
Confidence            998887766 6899999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHh--ccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          148 YVVRSPNSSLTKEDVQKFVVKQ--VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~~~~--l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      +++..++...+.+++++++...  |+.++.|..++++++||+|++||++|+.|++++.+
T Consensus       449 ~vv~~~~~~~~~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~  507 (529)
T PRK07867        449 ALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVD  507 (529)
T ss_pred             EEEECCCCCCCHHHHHHHHHhhccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCC
Confidence            9998877777888999999875  99999999999999999999999999999988654

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.4e-37  Score=257.14  Aligned_cols=199  Identities=44%  Similarity=0.770  Sum_probs=179.9

Q ss_pred             CcccccCccceeccCCcc-CCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808            1 GYGMTETCGVVTVENPLL-GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~   79 (206)
                      .||+||++++++...... ....+.++|+|++++.++++| ++++.++.|..|||+++++.++.||++++..+...++.+
T Consensus       313 ~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~  391 (513)
T PRK07656        313 GYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDAD  391 (513)
T ss_pred             EEccccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccC
Confidence            499999988776554322 122367899999999999999 678999999999999999999999999988888777668


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK  159 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (206)
                      +||+|||+++++++|.++++||.||+++++|.++++.+||+.+.+++++.++++++.++...++.++++++..+....+.
T Consensus       392 ~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~  471 (513)
T PRK07656        392 GWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTE  471 (513)
T ss_pred             CceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999988888888999998876667778


Q ss_pred             HHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHH
Q 043808          160 EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIA  200 (206)
Q Consensus       160 ~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~  200 (206)
                      .++++++++.|+.++.|..++++++||+|++||++|++|++
T Consensus       472 ~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~  512 (513)
T PRK07656        472 EELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE  512 (513)
T ss_pred             HHHHHHHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence            89999999999999999999999999999999999999875

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.1e-37  Score=258.91  Aligned_cols=198  Identities=39%  Similarity=0.666  Sum_probs=178.3

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++.+++.... .....+.++|+|++++.++++| ++++++|.|+.|||++++++++.||+++++.+...+..++
T Consensus       358 ~YG~tE~~~~~~~~~~-~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g  435 (557)
T PRK07059        358 GYGLSETSPVATCNPV-DATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADG  435 (557)
T ss_pred             ccccccccchhhcCCC-CCCCcCCcccCccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCC
Confidence            5999999987755432 2234567899999999999999 7789999999999999999999999999988877776789


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.++++||.+|+++++|++++|.+||+.+.++++|.++++++.++...++.++++++... ...+.+
T Consensus       436 ~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~-~~~~~~  514 (557)
T PRK07059        436 FFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKD-PALTEE  514 (557)
T ss_pred             ceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCC-CCCCHH
Confidence            9999999999999999999999999999999999999999999999999999999988888888888888653 345678


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHH
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAK  201 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~  201 (206)
                      ++.+++.+.++.++.|..+++++++|+|++||++|+.|+++
T Consensus       515 ~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r~~L~~~  555 (557)
T PRK07059        515 DVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRRELRDG  555 (557)
T ss_pred             HHHHHHHHhcccccCCcEEEEeccCCCCcccceeHHHHHhh
Confidence            99999999999999999999999999999999999999875

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-36  Score=256.44  Aligned_cols=202  Identities=34%  Similarity=0.552  Sum_probs=180.9

Q ss_pred             CcccccCccceeccCCcc----CCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc
Q 043808            1 GYGMTETCGVVTVENPLL----GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~----~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~   76 (206)
                      .||+||++.+++......    ......++|+|+|++.++++| +++++++.|..|||+++++.++.||++++..+...+
T Consensus       312 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~  390 (524)
T PRK06188        312 YYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF  390 (524)
T ss_pred             eeCccccCCceeecCchhccccccccCCccccccCCcEEEEEc-CCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhh
Confidence            499999977665443221    123457899999999999999 669999999999999999999999999988887766


Q ss_pred             cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCC
Q 043808           77 DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS  156 (206)
Q Consensus        77 ~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  156 (206)
                       .++||+|||+++++++|.+++.||.+++++++|++++|.+||+.+.++++|.+++|++.+++..++.++++++..+...
T Consensus       391 -~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  469 (524)
T PRK06188        391 -RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAA  469 (524)
T ss_pred             -cCCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCC
Confidence             6789999999999999999999999999999999999999999999999999999999888877888999998877666


Q ss_pred             CCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          157 LTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       157 ~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ....++++++++.++.++.|..++++++||+|++||++|++|++++.+
T Consensus       470 ~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~  517 (524)
T PRK06188        470 VDAAELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWE  517 (524)
T ss_pred             CCHHHHHHHHHHhcccCCCCcEEEEecCCCCCccccccHHHHHHHHHh
Confidence            778899999999999999999999999999999999999999998743

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=6e-37  Score=259.17  Aligned_cols=205  Identities=36%  Similarity=0.537  Sum_probs=180.9

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++++.+............++|+|++++.++++| +++++++.|..|||+++|++++.||++++..+...++.++
T Consensus       332 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g  410 (547)
T PRK06087        332 VYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEG  410 (547)
T ss_pred             EecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCC
Confidence            499999998765443222223346789999999999999 7889999999999999999999999999998877777789


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCC-CCCCCH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP-NSSLTK  159 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~~~  159 (206)
                      ||+|||+++++++|.++++||.+|+|+.+|.+++|.+||+.+..+++|.++++++.+++..++.++++++... ....+.
T Consensus       411 ~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~  490 (547)
T PRK06087        411 WYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTL  490 (547)
T ss_pred             CcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCH
Confidence            9999999999999999999999999999999999999999999999999999999988888889999998765 344567


Q ss_pred             HHHHHHHH-HhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHccC
Q 043808          160 EDVQKFVV-KQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI  206 (206)
Q Consensus       160 ~~l~~~~~-~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~~  206 (206)
                      .++.+++. +.++.+++|..+.++++||+|++||++|+.|++++.+++
T Consensus       491 ~~~~~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~~  538 (547)
T PRK06087        491 EEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRL  538 (547)
T ss_pred             HHHHHHHHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHHh
Confidence            78888875 579999999999999999999999999999999988763

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=9.5e-37  Score=257.48  Aligned_cols=201  Identities=28%  Similarity=0.444  Sum_probs=178.9

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeec-CCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLV-AGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~   79 (206)
                      .||+||++..++.. .........++|+|+ |++.++++| +++++++.|+.|||+++|+.++.||++++..+...++.+
T Consensus       331 ~YG~tE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d  408 (536)
T PRK10946        331 VFGMAEGLVNYTRL-DDSDERIFTTQGRPMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDAN  408 (536)
T ss_pred             eecccccceeeecC-CCccccccccCCcccCCCceEEEEC-CCCCCCCCCCccEEEEecCccchhhcCCcccchhhcccC
Confidence            59999976444322 111233467899999 789999999 788999999999999999999999999999988888788


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK  159 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (206)
                      +||+|||+++++++|.++++||.+|+++++|.+++|.+||+.+.++++|.+++++..++...++.++++++..+.  .+.
T Consensus       409 ~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~--~~~  486 (536)
T PRK10946        409 GFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP--LKA  486 (536)
T ss_pred             CceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC--CCH
Confidence            999999999999999999999999999999999999999999999999999999999988888888998887644  667


Q ss_pred             HHHHHHHHHh-ccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          160 EDVQKFVVKQ-VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       160 ~~l~~~~~~~-l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      +++++.+++. ++.++.|..+++++++|+|++||++|++|++++.++
T Consensus       487 ~~l~~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~  533 (536)
T PRK10946        487 VQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR  533 (536)
T ss_pred             HHHHHHHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhh
Confidence            8999999886 999999999999999999999999999999998765

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=1e-36  Score=257.38  Aligned_cols=196  Identities=30%  Similarity=0.472  Sum_probs=174.0

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++.+++............++|+|++++.+++++ ++++.++.|+.|||++++++++.||++++..+.  .+.++
T Consensus       341 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~--~~~~~  417 (538)
T TIGR03208       341 AWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNS--TDAEG  417 (538)
T ss_pred             eeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCCCcCCCCcEEEEecCcccccccCCccccc--ccCCC
Confidence            499999988775443322223346789999999999999 678999999999999999999999999887654  24689


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.++++||.+|+++++|++|+|.+||+.|.++++|.+++|++.++...++.+++++++......+..
T Consensus       418 ~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~  497 (538)
T TIGR03208       418 WFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFA  497 (538)
T ss_pred             ceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999888888899999998776667788


Q ss_pred             HHHHHHHH-hccccCceeEEEEeCCcCCCCCCcccHHHHH
Q 043808          161 DVQKFVVK-QVARYKRLRNVTFTNSIPKTTSGKILRRELI  199 (206)
Q Consensus       161 ~l~~~~~~-~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~  199 (206)
                      ++.+++.+ .++.++.|..+++++++|+|++||++|++|+
T Consensus       498 ~l~~~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~  537 (538)
T TIGR03208       498 AMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR  537 (538)
T ss_pred             HHHHHHHhcchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence            99999985 7999999999999999999999999999986

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=2.7e-37  Score=284.55  Aligned_cols=200  Identities=22%  Similarity=0.334  Sum_probs=169.5

Q ss_pred             CcccccCccceeccCCccC---------CCCCCcceeecCCceEEEEeCC-CCCCCCCCCceEEEEEcCCCCcccCCChh
Q 043808            1 GYGMTETCGVVTVENPLLG---------VQNSGSAGRLVAGVEAQIVCVD-TLKPLPPNQVGELWVRGPILMPGYFNNEQ   70 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~---------~~~~~~~G~p~~~~~~~i~~~~-~~~~~~~g~~Gel~i~~~~~~~~y~~~~~   70 (206)
                      +||+||++.+++.......         .....++|+|++++.++|+|.+ .++++|.|..|||+|+||+++.||+++|+
T Consensus       561 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~  640 (1389)
T TIGR03443       561 MYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPE  640 (1389)
T ss_pred             CccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChh
Confidence            5999999887765422110         1124578999999999999853 35889999999999999999999999998


Q ss_pred             hcccccc----------------------------CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHH
Q 043808           71 ATKLIID----------------------------KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVL  122 (206)
Q Consensus        71 ~~~~~~~----------------------------~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i  122 (206)
                      .+.+.|.                            .++||+|||++++++||.++|+||.||+||++|++|+|.+||+.|
T Consensus       641 ~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l  720 (1389)
T TIGR03443       641 LNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHL  720 (1389)
T ss_pred             HhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHH
Confidence            8876551                            257999999999999999999999999999999999999999999


Q ss_pred             hcCCCcceeEEEeecCCCCCceeEEEEEeCCCC-C-------------------------CCHHHHHHHHHHhccccCce
Q 043808          123 VSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS-S-------------------------LTKEDVQKFVVKQVARYKRL  176 (206)
Q Consensus       123 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~-------------------------~~~~~l~~~~~~~l~~~~~p  176 (206)
                      .++|.|.+++|+...+...+..+++++++.... .                         ....+++++++++|+.|++|
T Consensus       721 ~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P  800 (1389)
T TIGR03443       721 SQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIP  800 (1389)
T ss_pred             HhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCC
Confidence            999999999999888777778899998865211 0                         01357889999999999999


Q ss_pred             eEEEEeCCcCCCCCCcccHHHHHH
Q 043808          177 RNVTFTNSIPKTTSGKILRRELIA  200 (206)
Q Consensus       177 ~~~~~v~~~P~t~~GKv~r~~l~~  200 (206)
                      ..++++++||+|++||++|++|+.
T Consensus       801 ~~~~~~~~lP~t~~GKidr~~L~~  824 (1389)
T TIGR03443       801 TVIVPLKKLPLNPNGKVDKPALPF  824 (1389)
T ss_pred             ceEEEcccCCCCCCccccHhhcCC
Confidence            999999999999999999999853

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-36  Score=256.69  Aligned_cols=203  Identities=35%  Similarity=0.611  Sum_probs=181.0

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++++.+............++|+|++++.++++| ++++.++.|..|||+++|+.++.||++++..++..| .++
T Consensus       322 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~  399 (542)
T PRK07786        322 AFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF-AGG  399 (542)
T ss_pred             eecccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHh-hCC
Confidence            499999998766543333344567899999999999999 778999999999999999999999999999888777 578


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCC-CCCH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS-SLTK  159 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~~~~  159 (206)
                      ||+|||+++++++|.++++||.+|+|+++|.++++.+||+.+.+++.|.++++++.++...++.++++++..... ....
T Consensus       400 ~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  479 (542)
T PRK07786        400 WFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTL  479 (542)
T ss_pred             cccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCCCH
Confidence            999999999999999999999999999999999999999999999999999999988777778888888876543 3567


Q ss_pred             HHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          160 EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       160 ~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      .++.+.+.++++.++.|..++++++||+|++||++|++|++++.+.
T Consensus       480 ~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~  525 (542)
T PRK07786        480 EDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGAC  525 (542)
T ss_pred             HHHHHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhh
Confidence            8999999999999999999999999999999999999999998753

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-36  Score=251.50  Aligned_cols=196  Identities=36%  Similarity=0.674  Sum_probs=172.7

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCC-CCC-ceEEEEEcCCCCcccCCChhhccccccC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLP-PNQ-VGELWVRGPILMPGYFNNEQATKLIIDK   78 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~-~g~-~Gel~i~~~~~~~~y~~~~~~~~~~~~~   78 (206)
                      .||+||++..++....  ....++++|+|++++.++|+| +++++++ .|. .|||+++|++++.||++++..+...+..
T Consensus       272 ~YG~tE~~~~~~~~~~--~~~~~~~vG~~~~g~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~  348 (471)
T PRK07787        272 RYGMTETLITLSTRAD--GERRPGWVGLPLAGVETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTA  348 (471)
T ss_pred             ccCccccCcceecCCC--CcccCCcccccCCCcEEEEEC-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccC
Confidence            5999999875543322  234567899999999999999 5677787 343 7999999999999999999998888867


Q ss_pred             CCeEecCceEEEecCCcEEEeccc-cceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCC
Q 043808           79 EGWLHTGDLGYFDEHGQLFIVDRI-KELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL  157 (206)
Q Consensus        79 ~~~~~TGDl~~~~~~g~l~~~GR~-dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  157 (206)
                      ++||+|||++++++||.++++||. |++++++|+++++.+||+.+..++.|.+++|++.++...++.++++++..  ...
T Consensus       349 ~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~--~~~  426 (471)
T PRK07787        349 DGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGA--DDV  426 (471)
T ss_pred             CCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeC--CCC
Confidence            899999999999999999999996 89999999999999999999999999999999998887788999998873  345


Q ss_pred             CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHH
Q 043808          158 TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAK  201 (206)
Q Consensus       158 ~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~  201 (206)
                      +.+++.+++++.+++++.|..++++++||+|++||++|+.|+++
T Consensus       427 ~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~~  470 (471)
T PRK07787        427 AADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLSE  470 (471)
T ss_pred             CHHHHHHHHHhhcccccCCcEEEEeccCCCCCCccccHHHhccC
Confidence            67899999999999999999999999999999999999999753

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.1e-36  Score=276.25  Aligned_cols=202  Identities=29%  Similarity=0.410  Sum_probs=176.1

Q ss_pred             CcccccCccceeccCCcc--------CCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhc
Q 043808            1 GYGMTETCGVVTVENPLL--------GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQAT   72 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~--------~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~   72 (206)
                      .||+||++++++......        ....++++|+|+|+++++++|+++++++|.|+.|||+++|++++.||+++++.+
T Consensus       929 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t 1008 (1146)
T PRK08633        929 GYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKT 1008 (1146)
T ss_pred             ccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCCccch
Confidence            599999998776543211        123467899999999999999888999999999999999999999999999888


Q ss_pred             ccccc---CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCC--CcceeEEEeecCCCCCceeEE
Q 043808           73 KLIID---KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHP--EILDAVVIPFPDPEAGEVPIA  147 (206)
Q Consensus        73 ~~~~~---~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~--~v~~~~v~~~~~~~~~~~~~~  147 (206)
                      ...+.   +++||+|||++++++||.+++.||.||++|++|++|+|.+||+.+.+++  .+.++++++.+++..++.+++
T Consensus      1009 ~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~ 1088 (1146)
T PRK08633       1009 AEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVV 1088 (1146)
T ss_pred             HHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEE
Confidence            76662   2489999999999999999999999999999999999999999999998  466789999998888888888


Q ss_pred             EEEeCCCCCCCHHHHHHHHHH-hccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          148 YVVRSPNSSLTKEDVQKFVVK-QVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      +++.   ...+.+++++++.+ .+++++.|..+++++++|+|++||++|++|+++.++.
T Consensus      1089 ~v~~---~~~~~~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633       1089 LHTC---GAEDVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred             EEec---CccCHHHHHHHHHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHh
Confidence            8875   24466788888875 6999999999999999999999999999999987653

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-36  Score=254.44  Aligned_cols=196  Identities=31%  Similarity=0.508  Sum_probs=171.4

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccC--
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDK--   78 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~--   78 (206)
                      .||+||+++++..... ......+++|+|+++ .++++| +++++++.|+.|||++++++++.||++++..+...+..  
T Consensus       301 ~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~  377 (501)
T PRK13390        301 YYSSTEAHGMTFIDSP-DWLAHPGSVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAH  377 (501)
T ss_pred             eecccccCceEEecch-hhccCCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCC
Confidence            4999999876543322 112346789999999 689999 78899999999999999999999999999888766533  


Q ss_pred             CCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCC
Q 043808           79 EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLT  158 (206)
Q Consensus        79 ~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  158 (206)
                      ++|++|||+++++++|.+++.||.|++++++|.+|+|.+||+.+.+++.|.++++++.++...++.+++++++.......
T Consensus       378 ~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~  457 (501)
T PRK13390        378 PFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGS  457 (501)
T ss_pred             CceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcc
Confidence            57999999999999999999999999999999999999999999999999999999999888888999988876543322


Q ss_pred             ---HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHH
Q 043808          159 ---KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELI  199 (206)
Q Consensus       159 ---~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~  199 (206)
                         .+++.+++.+.|+.++.|..++++++||+|++||++|++|+
T Consensus       458 ~~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~  501 (501)
T PRK13390        458 DELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR  501 (501)
T ss_pred             hhhHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence               46888999999999999999999999999999999999874

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=4.1e-36  Score=251.39  Aligned_cols=201  Identities=27%  Similarity=0.356  Sum_probs=169.2

Q ss_pred             CcccccCccceeccCC---ccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc-
Q 043808            1 GYGMTETCGVVTVENP---LLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII-   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~---~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~-   76 (206)
                      +||+||++..++....   ........++|+|+|++.++|++ +++..++.|+.|||+++|++++.||+++++.+...+ 
T Consensus       290 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~  368 (502)
T TIGR01734       290 TYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFF  368 (502)
T ss_pred             CccCCcceEEEEEEEccccccccCCccccccccCCCEEEEEC-CCCCCCCCCCeeEEEEccccccccccCCcccchHhhe
Confidence            5999999865543211   11123345799999999999999 678999999999999999999999999988776544 


Q ss_pred             --cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeec-CCCCCceeEEEEEeCC
Q 043808           77 --DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFP-DPEAGEVPIAYVVRSP  153 (206)
Q Consensus        77 --~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~-~~~~~~~~~~~v~~~~  153 (206)
                        ++.+||+|||+++++++ .++++||.+|+|+++|++|+|.+||+.+.+++.|.++++++.. .....+.++++++...
T Consensus       369 ~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~  447 (502)
T TIGR01734       369 SHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPET  447 (502)
T ss_pred             eCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecc
Confidence              34569999999999877 9999999999999999999999999999999999999999865 4445577888887764


Q ss_pred             CCCCC----HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHH
Q 043808          154 NSSLT----KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLR  203 (206)
Q Consensus       154 ~~~~~----~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~  203 (206)
                      .....    ..++++.+.+.+++++.|..+++++++|+|++||++|++|++++.
T Consensus       448 ~~~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       448 EDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN  501 (502)
T ss_pred             cccccchhhHHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence            33222    267889999999999999999999999999999999999999875

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3e-37  Score=239.82  Aligned_cols=200  Identities=30%  Similarity=0.507  Sum_probs=180.2

Q ss_pred             cccccCccceeccCCccC-CCCCCcceeec-CCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808            2 YGMTETCGVVTVENPLLG-VQNSGSAGRLV-AGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         2 YG~TE~g~~~~~~~~~~~-~~~~~~~G~p~-~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~   79 (206)
                      +||.|.-  ..+++.+++ +.-..+.|+|+ |.-+++|+| ++|++++.|++|+|..+||+..+||+..|..++..|+.+
T Consensus       337 FGMAEGL--vnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~  413 (542)
T COG1021         337 FGMAEGL--VNYTRLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDAD  413 (542)
T ss_pred             hhhhhhh--hcccccCCchHheeecCCCcCCCcceeEEec-CCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcC
Confidence            5666653  233333333 44457889999 778999999 899999999999999999999999999999999999999


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK  159 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (206)
                      |||+|||+++++++|++.+.||..|+|++.|++|-.++||+.+..||.|.++.+++.++...|+..++|++.... ..+.
T Consensus       414 GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~-~~~~  492 (542)
T COG1021         414 GFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEP-PLRA  492 (542)
T ss_pred             CceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCC-CCCH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998755 3778


Q ss_pred             HHHHHHHHHh-ccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          160 EDVQKFVVKQ-VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       160 ~~l~~~~~~~-l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      .+|++++.+. +..+++|+.|.++++||+|+-|||+++.|++++...
T Consensus       493 ~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~~  539 (542)
T COG1021         493 AQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASR  539 (542)
T ss_pred             HHHHHHHHHcchhhhcCCcceeecccCCCcccccccHHHHHHHhhhh
Confidence            8999999776 999999999999999999999999999999988754

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=2.8e-36  Score=254.06  Aligned_cols=196  Identities=30%  Similarity=0.486  Sum_probs=173.0

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeec-CCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLV-AGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~   79 (206)
                      +||+||++..++.. .........++|+|+ ++..++++| +++++++.|+.|||+++|++++.||++++..+...++.+
T Consensus       330 ~YG~tE~~~~~~~~-~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~d  407 (527)
T TIGR02275       330 VFGMAEGLVNYTRL-DDPAEIIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAE  407 (527)
T ss_pred             eeccCccCccccCC-CCccccccccCCCCCCCCceEEEEC-CCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcC
Confidence            59999975433321 112233456889999 478999999 778999999999999999999999999999888888788


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK  159 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (206)
                      +||+|||+++++++|++++.||.+|+|+++|++|+|.+||+.+.++|+|.+++|++.++...++.++++++.... ..+.
T Consensus       408 g~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~-~~~~  486 (527)
T TIGR02275       408 GFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP-ALKA  486 (527)
T ss_pred             CCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC-CCCH
Confidence            999999999999999999999999999999999999999999999999999999999988888889999887654 4677


Q ss_pred             HHHHHHHHHh-ccccCceeEEEEeCCcCCCCCCcccHHHHH
Q 043808          160 EDVQKFVVKQ-VARYKRLRNVTFTNSIPKTTSGKILRRELI  199 (206)
Q Consensus       160 ~~l~~~~~~~-l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~  199 (206)
                      .++++++++. ++.++.|..++++++||+|++||++|+.|+
T Consensus       487 ~~l~~~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~  527 (527)
T TIGR02275       487 AQLRRFLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR  527 (527)
T ss_pred             HHHHHHHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence            8999999985 999999999999999999999999999874

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.5e-36  Score=258.49  Aligned_cols=179  Identities=28%  Similarity=0.470  Sum_probs=154.1

Q ss_pred             CcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc------------------CCCeEecC
Q 043808           24 GSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID------------------KEGWLHTG   85 (206)
Q Consensus        24 ~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~------------------~~~~~~TG   85 (206)
                      .++|+|+|+++++|+|+++++++|.|+.|||+++|++++.||+++++.+...|.                  ..+||+||
T Consensus       402 ~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TG  481 (612)
T PRK12476        402 VSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTG  481 (612)
T ss_pred             EeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeecc
Confidence            478999999999999966599999999999999999999999999988876652                  13599999


Q ss_pred             ceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhc-CCCcce--eEEEeecCCCCCceeEEEEEeCCCC-CCCHHH
Q 043808           86 DLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVS-HPEILD--AVVIPFPDPEAGEVPIAYVVRSPNS-SLTKED  161 (206)
Q Consensus        86 Dl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~-~~~v~~--~~v~~~~~~~~~~~~~~~v~~~~~~-~~~~~~  161 (206)
                      |++++ ++|.++|+||.+|+||++|++|+|.+||+.+.+ +|.|.+  +++++.+++. ++.++++++..+.. ..+.++
T Consensus       482 Dlg~~-~dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~  559 (612)
T PRK12476        482 DLGVY-LDGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSRADPAP  559 (612)
T ss_pred             cccee-ECCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCcccccHHH
Confidence            99998 599999999999999999999999999999985 799999  6677777765 67888888876553 346678


Q ss_pred             HHHHHHHhcc-ccCc-eeEEEEeC--CcCCCCCCcccHHHHHHHHHc
Q 043808          162 VQKFVVKQVA-RYKR-LRNVTFTN--SIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       162 l~~~~~~~l~-~~~~-p~~~~~v~--~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      |.+++++.+. .++. |..++++.  +||+|++||++|++|++++.+
T Consensus       560 l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~  606 (612)
T PRK12476        560 AIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLD  606 (612)
T ss_pred             HHHHHHHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHc
Confidence            8888888877 4776 57777775  699999999999999999764

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=4.1e-36  Score=254.71  Aligned_cols=199  Identities=36%  Similarity=0.642  Sum_probs=177.4

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++.+++.... ......+++|.|++++.++++| ++++.++.|..|||+++++.++.||+++++.+...++.++
T Consensus       360 ~YG~tE~~~~~~~~~~-~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g  437 (560)
T PRK08751        360 AYGLTETSPAACINPL-TLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADG  437 (560)
T ss_pred             eeccccCCCceecccc-cccccCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCccchhhcCChhhhhhccccCC
Confidence            4999999887654432 1234457899999999999999 7889999999999999999999999999998888887789


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.+++.||.+|+++++|.+++|.+||+.+..+++|.++++++.++...++.+.++++.. ....+.+
T Consensus       438 ~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~-~~~~~~~  516 (560)
T PRK08751        438 WLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKK-DPALTAE  516 (560)
T ss_pred             CccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcC-CCCCCHH
Confidence            999999999999999999999999999999999999999999999999999999998877777777777654 4456678


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHH
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKL  202 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~  202 (206)
                      ++++++.+.++.++.|..++++++||+|++||++|+.|++..
T Consensus       517 ~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~~  558 (560)
T PRK08751        517 DVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDAA  558 (560)
T ss_pred             HHHHHHHHhhhhccCCeEEEEhhhCCCCccccccHHHHHHhh
Confidence            999999999999999999999999999999999999998763

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.5e-36  Score=250.13  Aligned_cols=202  Identities=45%  Similarity=0.761  Sum_probs=181.7

Q ss_pred             CcccccCccceeccCCccC----CCCCCcceeecCCceEEEEeCCCCCCCCC--CCceEEEEEcCCCCcccCCChhhccc
Q 043808            1 GYGMTETCGVVTVENPLLG----VQNSGSAGRLVAGVEAQIVCVDTLKPLPP--NQVGELWVRGPILMPGYFNNEQATKL   74 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~----~~~~~~~G~p~~~~~~~i~~~~~~~~~~~--g~~Gel~i~~~~~~~~y~~~~~~~~~   74 (206)
                      .||+||+|+++........    .....++|+|++++.++|+| +++++++.  |..|||++++++++.+|+++++.+..
T Consensus       312 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~  390 (521)
T PRK06187        312 GYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAE  390 (521)
T ss_pred             eeccCccCcccccCCcccccccccccCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHH
Confidence            4999999987765533221    12567899999999999999 66888988  99999999999999999999888877


Q ss_pred             cccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC
Q 043808           75 IIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN  154 (206)
Q Consensus        75 ~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  154 (206)
                      .+ .++||+|||+++++++|.+++.||.+|+++++|.++++.+||+.+..+++|.++++++.+++..++.++++++..+.
T Consensus       391 ~~-~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  469 (521)
T PRK06187        391 TI-DGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPG  469 (521)
T ss_pred             Hh-hCCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCC
Confidence            77 56799999999999999999999999999999999999999999999999999999998887778889999988777


Q ss_pred             CCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          155 SSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       155 ~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ...+..++++++.+.++.+++|..++++++||+|++||++|..|+++|++
T Consensus       470 ~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~  519 (521)
T PRK06187        470 ATLDAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAE  519 (521)
T ss_pred             CCCCHHHHHHHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhc
Confidence            66788999999999999999999999999999999999999999999876

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=8.6e-37  Score=263.00  Aligned_cols=201  Identities=32%  Similarity=0.490  Sum_probs=162.6

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCC---CCCCCceEEEEEcCCCCcccCCChhhcccccc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKP---LPPNQVGELWVRGPILMPGYFNNEQATKLIID   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~---~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~   77 (206)
                      +||+||+++.++....  ....++++|+|+|+++++|+|.+++..   ...+..|||+++||+++.||+++++.++..|+
T Consensus       407 ~YG~TE~~~~~~~~~~--~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~  484 (651)
T PLN02736        407 GYGMTETSCVISGMDE--GDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVID  484 (651)
T ss_pred             EechHHhchheeccCC--CCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhc
Confidence            5999999877654433  234568899999999999998443322   22334699999999999999999999988887


Q ss_pred             CCCeEecCceEEEecCCcEEEeccccceEEE-CCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCC-
Q 043808           78 KEGWLHTGDLGYFDEHGQLFIVDRIKELIKC-NGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS-  155 (206)
Q Consensus        78 ~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-  155 (206)
                      .+|||+|||++++++||.++|+||.+|+||+ +|++|+|.+||+.+.++|.|.+++|++.   ..++.++++|++.+.. 
T Consensus       485 ~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~~~~  561 (651)
T PLN02736        485 EDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDPEVL  561 (651)
T ss_pred             cCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCHHHH
Confidence            8899999999999999999999999999997 7999999999999999999999999973   2456889999876421 


Q ss_pred             -------CCCHHHHHHH-------------HH-----HhccccCceeEEEEeCCcC------CCCCCcccHHHHHHHHHc
Q 043808          156 -------SLTKEDVQKF-------------VV-----KQVARYKRLRNVTFTNSIP------KTTSGKILRRELIAKLRS  204 (206)
Q Consensus       156 -------~~~~~~l~~~-------------~~-----~~l~~~~~p~~~~~v~~~P------~t~~GKv~r~~l~~~~~~  204 (206)
                             ..+..++.++             +.     ..|+.++.|+.|+++++.|      +|++||++|+.+++.|.+
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~  641 (651)
T PLN02736        562 KAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAK  641 (651)
T ss_pred             HHHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHH
Confidence                   1111112211             21     2599999999999998876      699999999999999987


Q ss_pred             cC
Q 043808          205 KI  206 (206)
Q Consensus       205 ~~  206 (206)
                      .|
T Consensus       642 ~i  643 (651)
T PLN02736        642 AI  643 (651)
T ss_pred             HH
Confidence            64

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.6e-36  Score=251.87  Aligned_cols=198  Identities=29%  Similarity=0.465  Sum_probs=169.9

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEE-----------EEeCCCCCCC-CCCCceEEEEE-cCCCCcccCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQ-----------IVCVDTLKPL-PPNQVGELWVR-GPILMPGYFN   67 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~-----------i~~~~~~~~~-~~g~~Gel~i~-~~~~~~~y~~   67 (206)
                      .||+||++.+++...    ....+++|+|++++.+.           ++| ++++.+ +.+..|||+++ |+.++.||++
T Consensus       294 ~YG~tE~~~~~~~~~----~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~  368 (540)
T PRK13388        294 GYGSSEGAVIVVREP----GTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFFEGYYN  368 (540)
T ss_pred             ccccccccceeecCC----CCCCCCCCCCCCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCcccccccC
Confidence            599999987665331    23467899999997653           233 344444 34678999998 9999999999


Q ss_pred             ChhhccccccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEE
Q 043808           68 NEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIA  147 (206)
Q Consensus        68 ~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~  147 (206)
                      ++..+.+.+ .++||+|||+++++++|.++++||.+|+|+++|++|+|.+||+.+.+++.|.+++|++.++...++.+++
T Consensus       369 ~~~~t~~~~-~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~  447 (540)
T PRK13388        369 NPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMA  447 (540)
T ss_pred             ChHHHHHHh-hcCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEE
Confidence            999887777 5789999999999999999999999999999999999999999999999999999999998888888888


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHh--ccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          148 YVVRSPNSSLTKEDVQKFVVKQ--VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~~~~--l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ++++.+....+.+++++++..+  |+.++.|..++++++||+|++||++|++|+++..+
T Consensus       448 ~v~~~~~~~~~~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~  506 (540)
T PRK13388        448 ALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWA  506 (540)
T ss_pred             EEEECCCCcCCHHHHHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccC
Confidence            8888777667788899999764  99999999999999999999999999999987643

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.7e-36  Score=300.12  Aligned_cols=199  Identities=26%  Similarity=0.365  Sum_probs=176.9

Q ss_pred             CcccccCccceeccCCccCC---CCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc
Q 043808            1 GYGMTETCGVVTVENPLLGV---QNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~   77 (206)
                      +||+||++.+++........   ....++|+|++++.++|+| ++++++|.|.+|||+|+|+++++||+++|+.++..|.
T Consensus      2293 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~ 2371 (5163)
T PRK12316       2293 GYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILD-ADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFV 2371 (5163)
T ss_pred             CccchhheeeeeeeecccccccCCCcCCcccccCCCEEEEEC-CCCCCCCCCCeeEEEecchhhcccccCChhhhhhhcc
Confidence            59999998877654322111   1236899999999999999 7789999999999999999999999999999887762


Q ss_pred             -------CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEE
Q 043808           78 -------KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV  150 (206)
Q Consensus        78 -------~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~  150 (206)
                             +.+||+|||++++++||.++|+||.|++||++|++|+|.+||+.|.++|+|.+++|++.++. .++.++++++
T Consensus      2372 ~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~-~~~~l~a~v~ 2450 (5163)
T PRK12316       2372 PDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA-SGKQLVAYVV 2450 (5163)
T ss_pred             CCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC-CCeEEEEEEE
Confidence                   34699999999999999999999999999999999999999999999999999999988665 6788999999


Q ss_pred             eCCCCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHH
Q 043808          151 RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAK  201 (206)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~  201 (206)
                      ..+......+++++++++.|+.|++|..++++++||+|++||++|++|.+.
T Consensus      2451 ~~~~~~~~~~~l~~~l~~~Lp~~~vP~~~~~l~~lP~t~~GKidR~~L~~~ 2501 (5163)
T PRK12316       2451 PDDAAEDLLAELRAWLAARLPAYMVPAHWVVLERLPLNPNGKLDRKALPKP 2501 (5163)
T ss_pred             ecCCCccCHHHHHHHHHhhCchhcCcceEeeecccCCCCCCccCHhhcCCC
Confidence            887777788999999999999999999999999999999999999998754

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.9e-35  Score=248.02  Aligned_cols=201  Identities=30%  Similarity=0.541  Sum_probs=178.8

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCc-ccCCChhhccccccCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMP-GYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~-~y~~~~~~~~~~~~~~   79 (206)
                      .||+||++.+++... ......++++|+|++++.++++| +++++++.|..|||++++++++. +|++++..+...+ .+
T Consensus       302 ~YG~tE~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-~~  378 (509)
T PRK12406        302 YYGSTESGAVTFATS-EDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID-RG  378 (509)
T ss_pred             eccccccCceEecCc-ccccccCCCcCccCCCcEEEEEC-CCCCCCCCCCceEEEEECCccccccccCCchhccccc-CC
Confidence            599999998665432 22234567899999999999999 77899999999999999998765 8998888776655 78


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK  159 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (206)
                      +||+|||+++++++|.+++.||.+|+++++|.+|++.+||+.|.++++|.++++++.++...++.++++++.......+.
T Consensus       379 ~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  458 (509)
T PRK12406        379 GFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDE  458 (509)
T ss_pred             CCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999988877888899998876656678


Q ss_pred             HHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          160 EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       160 ~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      +++++.+++.++.++.|..+++++++|+|++||++|++|++.+..
T Consensus       459 ~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~  503 (509)
T PRK12406        459 ADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWA  503 (509)
T ss_pred             HHHHHHHHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHHh
Confidence            999999999999999999999999999999999999999988764

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.7e-36  Score=300.12  Aligned_cols=196  Identities=27%  Similarity=0.362  Sum_probs=175.2

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc----
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII----   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~----   76 (206)
                      .||+||++..++............++|+|++++.++|+| ++++++|.|..|||+|+|+.+++||+++++.++..|    
T Consensus       802 ~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~  880 (5163)
T PRK12316        802 LYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILD-ANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSP  880 (5163)
T ss_pred             CcCcChheeeeeEEecccccCCCCCCccccCCCEEEEEC-CCCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCC
Confidence            599999986665443322344567899999999999999 778999999999999999999999999999887665    


Q ss_pred             --cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC
Q 043808           77 --DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN  154 (206)
Q Consensus        77 --~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  154 (206)
                        ++.+||+|||++++++||.++|+||.||+||++|++|+|.+||+.+.++|.|.+++|++.+    ++.++++|+..+.
T Consensus       881 ~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~  956 (5163)
T PRK12316        881 FVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESE  956 (5163)
T ss_pred             CCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCC
Confidence              3456999999999999999999999999999999999999999999999999999999875    5789999998776


Q ss_pred             CCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHH
Q 043808          155 SSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAK  201 (206)
Q Consensus       155 ~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~  201 (206)
                      .....++++++++++|+.|++|..++++++||+|++||++|++|.+.
T Consensus       957 ~~~~~~~l~~~l~~~Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~ 1003 (5163)
T PRK12316        957 GGDWREALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKALPAP 1003 (5163)
T ss_pred             CCCCHHHHHHHHHhhCCCccCCCeEEEHhhCCCCCCCChhHHhhcCc
Confidence            66678899999999999999999999999999999999999999764

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.7e-35  Score=247.82  Aligned_cols=201  Identities=29%  Similarity=0.529  Sum_probs=178.3

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++++++..... .....+++|+|+ ++.++++| +++++++.|+.|||+++++.++.+|++++..+...+.+++
T Consensus       293 ~yG~tE~~~~~~~~~~~-~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~  369 (502)
T PRK08276        293 YYASSEGGGVTVITSED-WLAHPGSVGKAV-LGEVRILD-EDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHG  369 (502)
T ss_pred             hcccccccceeEecCcc-ccccCCCcceec-ccEEEEEC-CCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCC
Confidence            59999999876544321 234557899999 88999999 6789999999999999999999999999998887776679


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCC--
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLT--  158 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--  158 (206)
                      ||+|||+++++++|.+++.||.+|+++++|.++++.+||..++++++|.++++++..++..++.++++++........  
T Consensus       370 ~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  449 (502)
T PRK08276        370 WVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDA  449 (502)
T ss_pred             ceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChh
Confidence            999999999999999999999999999999999999999999999999999999998888889999999987654333  


Q ss_pred             -HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          159 -KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       159 -~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                       .+++.+.+++.++.++.|..+++++++|+|++||++|++|++.+.+
T Consensus       450 ~~~~i~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~  496 (502)
T PRK08276        450 LAAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWE  496 (502)
T ss_pred             hHHHHHHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHh
Confidence             3478899999999999999999999999999999999999998754

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.2e-36  Score=252.01  Aligned_cols=203  Identities=29%  Similarity=0.493  Sum_probs=166.1

Q ss_pred             CcccccCccceeccCCccC---CCCCCcceeecCCceEEEEeCCCCCCC-----CCCCceEEEEEcCCCCcccCCChhhc
Q 043808            1 GYGMTETCGVVTVENPLLG---VQNSGSAGRLVAGVEAQIVCVDTLKPL-----PPNQVGELWVRGPILMPGYFNNEQAT   72 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~---~~~~~~~G~p~~~~~~~i~~~~~~~~~-----~~g~~Gel~i~~~~~~~~y~~~~~~~   72 (206)
                      .||+||++..+........   ....+++|+|+++++++|+|++....+     +.|+.|||++++++++.||++++..+
T Consensus       316 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t  395 (540)
T PRK05857        316 VYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERT  395 (540)
T ss_pred             ccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccch
Confidence            5999999865432211111   124578999999999999984433333     45788999999999999999998888


Q ss_pred             cccccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeC
Q 043808           73 KLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRS  152 (206)
Q Consensus        73 ~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  152 (206)
                      .+.+ .++||+|||+++++++|.+++.||.+|+|+++|.+|+|.+||..+..+|.|.+++|++.++...++.++++++..
T Consensus       396 ~~~~-~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~  474 (540)
T PRK05857        396 AEVL-IDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVAS  474 (540)
T ss_pred             hhhc-CCCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeC
Confidence            7777 578999999999999999999999999999999999999999999999999999999998877777777777765


Q ss_pred             CCCCC-CHH----HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          153 PNSSL-TKE----DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       153 ~~~~~-~~~----~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      +.... ...    .+.+.+++.+++++.|..+++++++|+|++||++|+.|++.+..
T Consensus       475 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~  531 (540)
T PRK05857        475 AELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATA  531 (540)
T ss_pred             CCCChhhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhh
Confidence            43221 122    34445567789999999999999999999999999999988763

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.8e-36  Score=296.19  Aligned_cols=199  Identities=27%  Similarity=0.382  Sum_probs=175.7

Q ss_pred             CcccccCccceeccCCcc---CCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc
Q 043808            1 GYGMTETCGVVTVENPLL---GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~---~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~   77 (206)
                      +||+||++..++......   ......++|+|++++.++|+| ++++++|.|++|||+|+|+.+++||+++++.+++.|.
T Consensus      3383 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~ 3461 (3956)
T PRK12467       3383 GYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFV 3461 (3956)
T ss_pred             CcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC-CCCCCCCCCCCceEEEcchhhhhhccCCcccchhhcc
Confidence            599999998776543211   122346899999999999999 7899999999999999999999999999999987763


Q ss_pred             C-------CCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEE
Q 043808           78 K-------EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV  150 (206)
Q Consensus        78 ~-------~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~  150 (206)
                      .       .+||+|||++++++||.++|+||.|++||++|++|+|.+||+.+.++|+|.+++|+... ...++.++++++
T Consensus      3462 ~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~-~~~~~~lva~v~ 3540 (3956)
T PRK12467       3462 ADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARD-GAGGKQLVAYVV 3540 (3956)
T ss_pred             CCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEec-CCCCcEEEEEEe
Confidence            2       45799999999999999999999999999999999999999999999999999999874 345778999998


Q ss_pred             eCCCCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHH
Q 043808          151 RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAK  201 (206)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~  201 (206)
                      .........++++++++++|+.|++|..+++++.||+|++||++|++|.+.
T Consensus      3541 ~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~ 3591 (3956)
T PRK12467       3541 PADPQGDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKALPDP 3591 (3956)
T ss_pred             CCCCCcccHHHHHHHHhccCChhhCCCeeeeeccCCCCCCCccchhhcCCC
Confidence            876656677899999999999999999999999999999999999999764

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=2e-35  Score=251.47  Aligned_cols=201  Identities=30%  Similarity=0.531  Sum_probs=166.2

Q ss_pred             CcccccCccceeccCCcc-----C-------CCCCCcceeecCCceEEEEeCCCCCCCCC--CCceEEEEEcCCCCcccC
Q 043808            1 GYGMTETCGVVTVENPLL-----G-------VQNSGSAGRLVAGVEAQIVCVDTLKPLPP--NQVGELWVRGPILMPGYF   66 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~-----~-------~~~~~~~G~p~~~~~~~i~~~~~~~~~~~--g~~Gel~i~~~~~~~~y~   66 (206)
                      +||+||+++.++......     .       ....+..+.+++  .+.+.+.+.+++++.  +..|||+++|++++.||+
T Consensus       330 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~  407 (579)
T PLN03102        330 AYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYL  407 (579)
T ss_pred             ecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceEEEEECcchhhhhc
Confidence            599999986553321100     0       011223333444  445666566777765  367999999999999999


Q ss_pred             CChhhccccccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeE
Q 043808           67 NNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPI  146 (206)
Q Consensus        67 ~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~  146 (206)
                      ++++.+...| .++||+|||+++++++|.+++.||.+|+|+++|++|+|.+||+.+.++|.|.+++|++.+++..++.++
T Consensus       408 ~~~~~t~~~f-~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~  486 (579)
T PLN03102        408 KNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPC  486 (579)
T ss_pred             CChhhhHhhh-ccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeE
Confidence            9999888777 678999999999999999999999999999999999999999999999999999999999988888999


Q ss_pred             EEEEeCCCCCC----------CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          147 AYVVRSPNSSL----------TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       147 ~~v~~~~~~~~----------~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ++|++.+....          ...++++++.++|+.++.|..++++++||+|++||++|++|++++++
T Consensus       487 a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~  554 (579)
T PLN03102        487 AFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKG  554 (579)
T ss_pred             EEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccccHHHHHHHHHH
Confidence            99987654332          35689999999999999999999999999999999999999998765

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.7e-35  Score=249.75  Aligned_cols=201  Identities=41%  Similarity=0.688  Sum_probs=179.3

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++.+++..... .....+++|.|+|++.+++++ ++++.++.|+.|||+++++.++.+|++++..+...+ .++
T Consensus       356 ~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g  432 (560)
T PRK08974        356 GYGLTECSPLVSVNPYD-LDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDG  432 (560)
T ss_pred             eecccccCceeeccCCC-CcccCCccccCcCCCEEEEEC-CCCCCCCCCCceEEEEecCCcchhhcCChhhhhhhh-hcC
Confidence            59999999877655432 234467899999999999999 678999999999999999999999999988887777 679


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.++++||.+|+++++|.++++.+||+.|.+++.|.++++++.++...++.++++++..+ .....+
T Consensus       433 ~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~-~~~~~~  511 (560)
T PRK08974        433 WLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKD-PSLTEE  511 (560)
T ss_pred             CcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCC-CCCCHH
Confidence            9999999999999999999999999999999999999999999999999999999988887887888776543 345668


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      ++++++.+.++.++.|..+.++++||+|++||++|+.|++.+.++
T Consensus       512 ~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~~~  556 (560)
T PRK08974        512 ELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARAK  556 (560)
T ss_pred             HHHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHHHHHHHHhh
Confidence            899999999999999999999999999999999999999988765

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.2e-35  Score=272.26  Aligned_cols=199  Identities=20%  Similarity=0.277  Sum_probs=171.4

Q ss_pred             CcccccCccceeccCCccC-----CCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccc
Q 043808            1 GYGMTETCGVVTVENPLLG-----VQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLI   75 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~-----~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~   75 (206)
                      .||+||++.+++.......     .....++|+|++++.++|+| ++++++|.|..|||+|+|+.++.||+++++.+...
T Consensus       748 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~  826 (1296)
T PRK10252        748 LYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASR  826 (1296)
T ss_pred             CCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccchhhCCCcccchhh
Confidence            5999999887765432211     23356899999999999999 88999999999999999999999999999988766


Q ss_pred             cc------CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeec----C--CCCCc
Q 043808           76 ID------KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFP----D--PEAGE  143 (206)
Q Consensus        76 ~~------~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~----~--~~~~~  143 (206)
                      |.      +.+||+|||++++++||.++++||.|++||++|++|++.+||+.|.++|+|.+++|+...    +  .....
T Consensus       827 f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~  906 (1296)
T PRK10252        827 FIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDAR  906 (1296)
T ss_pred             cccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCcc
Confidence            63      345999999999999999999999999999999999999999999999999999877542    1  12224


Q ss_pred             eeEEEEEeCCCCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHH
Q 043808          144 VPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIA  200 (206)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~  200 (206)
                      .++++++.......+.++|+++++++|+.+++|..++.+++||+|++||++|++|.+
T Consensus       907 ~lva~v~~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~  963 (1296)
T PRK10252        907 QLVGYLVSQSGLPLDTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPL  963 (1296)
T ss_pred             EEEEEEEcCCCCCCCHHHHHHHHHhhCchhcCCcEEEEecCCCCCCCcChhHHhcCC
Confidence            688898877665667889999999999999999999999999999999999999864

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.8e-35  Score=248.71  Aligned_cols=199  Identities=32%  Similarity=0.561  Sum_probs=171.6

Q ss_pred             CcccccCccceeccCCcc---------CCCCCCcceeecCCceEEEEeCCCCCCCCCC--CceEEEEEcCCCCcccCCCh
Q 043808            1 GYGMTETCGVVTVENPLL---------GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPN--QVGELWVRGPILMPGYFNNE   69 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~---------~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g--~~Gel~i~~~~~~~~y~~~~   69 (206)
                      +||+||++..++......         ......++|+|+|++.++++| ++++.++.+  ..|||+++|++++.||++++
T Consensus       324 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~  402 (539)
T PRK07008        324 AWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGD  402 (539)
T ss_pred             ccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCCh
Confidence            599999997654332110         011246789999999999999 678878754  57999999999999999987


Q ss_pred             hhccccccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEE
Q 043808           70 QATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYV  149 (206)
Q Consensus        70 ~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v  149 (206)
                      ..   .+ .++||+|||++++++||.+++.||.+|+++++|.+++|.+||+.+..+|.|.++++++.++...++.++++|
T Consensus       403 ~~---~~-~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v  478 (539)
T PRK07008        403 AS---PL-VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVV  478 (539)
T ss_pred             hh---hh-cCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEE
Confidence            32   22 268999999999999999999999999999999999999999999999999999999998887778888888


Q ss_pred             EeCCCCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          150 VRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      +..+....+.+++++++++++++++.|..++++++||+|++||++|++|++++.+
T Consensus       479 ~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~  533 (539)
T PRK07008        479 VKRPGAEVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRD  533 (539)
T ss_pred             EeCCCCccCHHHHHHHHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHh
Confidence            8776666778899999999999999999999999999999999999999998864

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=2.4e-35  Score=247.40  Aligned_cols=198  Identities=26%  Similarity=0.389  Sum_probs=174.8

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccC--
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDK--   78 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~--   78 (206)
                      .||+||++..+.... ......++++|+|++++.+++++ ++++.++.|+.|||+++|+.++.||++++..+...+..  
T Consensus       306 ~YG~tE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~  383 (515)
T TIGR03098       306 MYGLTEAFRSTYLPP-EEVDRRPDSIGKAIPNAEVLVLR-EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLP  383 (515)
T ss_pred             eeccccccceEeccc-ccccCCCCCcceecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccC
Confidence            499999986554322 22234578999999999999999 77889999999999999999999999988776544421  


Q ss_pred             ---------CCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEE
Q 043808           79 ---------EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYV  149 (206)
Q Consensus        79 ---------~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v  149 (206)
                               .+||+|||+++++++|.+++.||.+|+|+++|++|+|.+||+.+.+++.|.+++|++.+++..++.+++++
T Consensus       384 ~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~  463 (515)
T TIGR03098       384 PRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVV  463 (515)
T ss_pred             CccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEE
Confidence                     34899999999999999999999999999999999999999999999999999999999888889999998


Q ss_pred             EeCCCCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHH
Q 043808          150 VRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIA  200 (206)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~  200 (206)
                      +.......+..++++++++.++.++.|..+++++.||+|++||++|++|++
T Consensus       464 ~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~  514 (515)
T TIGR03098       464 TPPGGEELDRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA  514 (515)
T ss_pred             EeCCCCCCCHHHHHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence            876666677899999999999999999999999999999999999999874

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=3.4e-35  Score=236.54  Aligned_cols=178  Identities=29%  Similarity=0.529  Sum_probs=159.4

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++..+.            ..|+|++++.+++.+            |||+++|+.++.||++++...  .+..++
T Consensus       181 ~YG~TE~~~~~~------------~~G~~~~g~~v~i~~------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g  234 (358)
T PRK07824        181 TYGMSETSGGCV------------YDGVPLDGVRVRVED------------GRIALGGPTLAKGYRNPVDPD--PFAEPG  234 (358)
T ss_pred             cccCCccCCCcC------------cCceeCCCCEEEecC------------CEEEEecCccccccCCCcccc--cccCCC
Confidence            599999986542            247899999999843            899999999999999987643  233567


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||++++ ++|.+++.||.+|+|+++|++|+|.+||+.+.++|+|.+++|++.+++..++.++++++.........+
T Consensus       235 ~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~  313 (358)
T PRK07824        235 WFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLE  313 (358)
T ss_pred             ceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHH
Confidence            9999999999 899999999999999999999999999999999999999999999988888999999987766667789


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      ++++++++.++.+++|..++++++||+|++||++|++|+++|.++
T Consensus       314 ~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  358 (358)
T PRK07824        314 ALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAGE  358 (358)
T ss_pred             HHHHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhcC
Confidence            999999999999999999999999999999999999999998763

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=5.3e-35  Score=254.37  Aligned_cols=194  Identities=27%  Similarity=0.430  Sum_probs=162.5

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCC--hhh-------
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNN--EQA-------   71 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~--~~~-------   71 (206)
                      +||+||++++++....  ....++++|+|+|+++++++|. ++.    +..|||+++|++++.||+++  +..       
T Consensus       510 ~YG~TE~~~~~~~~~~--~~~~~~svG~p~pg~~~~i~d~-~~~----~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~  582 (718)
T PRK08043        510 GYGVTECAPVVSINVP--MAAKPGTVGRILPGMDARLLSV-PGI----EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAE  582 (718)
T ss_pred             ccCcccccceEEecCC--cccCCCCCCCcCCCCeeEEecC-CCC----CCceEEEEecCCccccccCCCCcccccccccc
Confidence            5999999887754432  2345789999999999999983 332    45699999999999999984  331       


Q ss_pred             ccccccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEe
Q 043808           72 TKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVR  151 (206)
Q Consensus        72 ~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  151 (206)
                      +...+..++||+|||++++++||.+++.||.+|+|+++|++|+|.+||+.+.+++.+.++++++.++...++.+++++. 
T Consensus       583 ~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~-  661 (718)
T PRK08043        583 NARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT-  661 (718)
T ss_pred             cccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEc-
Confidence            1111224689999999999999999999999999999999999999999999999888888888888777888877763 


Q ss_pred             CCCCCCCHHHHHHHHHHh-ccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          152 SPNSSLTKEDVQKFVVKQ-VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~-l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                        ....+.+++++++++. ++.+++|..++++++||+|++||++|++|++++.+
T Consensus       662 --~~~~~~~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~  713 (718)
T PRK08043        662 --DSELTREKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDE  713 (718)
T ss_pred             --CcccCHHHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhc
Confidence              3345678899999887 99999999999999999999999999999988754

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=7.1e-36  Score=292.13  Aligned_cols=199  Identities=28%  Similarity=0.372  Sum_probs=172.4

Q ss_pred             CcccccCccceeccCCc---cCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc
Q 043808            1 GYGMTETCGVVTVENPL---LGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~---~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~   77 (206)
                      +||+||++.+++.....   .......++|+|++++.++|+| ++++++|.|..|||+|+|+.+++||+++++.+++.|.
T Consensus      1866 ~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~ 1944 (3956)
T PRK12467       1866 LYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILD-ASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFV 1944 (3956)
T ss_pred             CccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEeccccccccccCChhhhhhhCc
Confidence            59999999877654321   1122356899999999999999 7899999999999999999999999999998877662


Q ss_pred             -------CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEE
Q 043808           78 -------KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV  150 (206)
Q Consensus        78 -------~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~  150 (206)
                             +.+||+|||++++++||.++|+||.||+||++|++|+|.+||+.+.++|+|.+++|++.+ ...+..++++++
T Consensus      1945 ~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~-~~~~~~lva~vv 2023 (3956)
T PRK12467       1945 ADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQD-GANGKQLVAYVV 2023 (3956)
T ss_pred             CCCCCCCCccceeccceEEECCCCCEEEecccCceEEeCeEEechHHHHHHHHhCCCcceEEEEEec-CCCCcEEEEEEE
Confidence                   346999999999999999999999999999999999999999999999999999999876 445678889988


Q ss_pred             eCCCCCC--------CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHH
Q 043808          151 RSPNSSL--------TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAK  201 (206)
Q Consensus       151 ~~~~~~~--------~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~  201 (206)
                      .......        ..+++++++++.|+.|++|..++++++||+|++||++|++|.+.
T Consensus      2024 ~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidr~~L~~~ 2082 (3956)
T PRK12467       2024 PTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDRKALPAP 2082 (3956)
T ss_pred             ecCcccccccccccccHHHHHHHHHhhCchhhCchhhhhhhcCCCCCCCCcchhhCCCC
Confidence            7543221        34689999999999999999999999999999999999998754

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.9e-35  Score=248.06  Aligned_cols=202  Identities=32%  Similarity=0.493  Sum_probs=173.1

Q ss_pred             CcccccCccceeccCCccC------CCCCCcceeecCCceEEEEeCCCCCCCC--CCCceEEEEEcCCCCcccCCChhhc
Q 043808            1 GYGMTETCGVVTVENPLLG------VQNSGSAGRLVAGVEAQIVCVDTLKPLP--PNQVGELWVRGPILMPGYFNNEQAT   72 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~------~~~~~~~G~p~~~~~~~i~~~~~~~~~~--~g~~Gel~i~~~~~~~~y~~~~~~~   72 (206)
                      .||+||++.+++.......      .....++|++++++++++++ + ++.++  .+..|||+++|++++.||++++..+
T Consensus       329 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t  406 (576)
T PRK05620        329 VWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEE  406 (576)
T ss_pred             eccccccccceeeeccCCccccccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCcccc
Confidence            5999999987765433211      11234789999999999998 4 66554  4678999999999999999988766


Q ss_pred             ----------------cccccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEee
Q 043808           73 ----------------KLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPF  136 (206)
Q Consensus        73 ----------------~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~  136 (206)
                                      ...+..++||+|||++++++||.+++.||.+|+|+.+|.++++.+||+.|.++|.|.+++|++.
T Consensus       407 ~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~  486 (576)
T PRK05620        407 GGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGY  486 (576)
T ss_pred             ccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEec
Confidence                            2223357899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCceeEEEEEeCCCCC---CCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          137 PDPEAGEVPIAYVVRSPNSS---LTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       137 ~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ++...++.+++++++.+...   ...++|++++.+.|+.++.|..++++++||+|++||++|++|++++++
T Consensus       487 ~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~r~~L~~~~~~  557 (576)
T PRK05620        487 PDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQHLAD  557 (576)
T ss_pred             cCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCcHHHHHHHHhc
Confidence            98888888888888776543   346899999999999999999999999999999999999999999874

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-34  Score=243.68  Aligned_cols=201  Identities=28%  Similarity=0.513  Sum_probs=175.8

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC-
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE-   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~-   79 (206)
                      .||+||++.++..... .....++++|+|+++ .++++| +++++++.|..|||+++++ ++.+|++++..+...+..+ 
T Consensus       306 ~YG~tE~~~~~~~~~~-~~~~~~~~vG~~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~  381 (511)
T PRK13391        306 YYAATEGLGFTACDSE-EWLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDG  381 (511)
T ss_pred             eeccccccceEEecCc-cccccCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCC
Confidence            4999999987654322 223456799999999 588998 7889999999999999999 8889999988887666444 


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCC---
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS---  156 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---  156 (206)
                      +||+|||+++++++|.+++.||.+|+++++|.++++.+||+.+.+++.|.++++++.++...++.++++++..+...   
T Consensus       382 ~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~  461 (511)
T PRK13391        382 TWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGP  461 (511)
T ss_pred             CEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCccc
Confidence            89999999999999999999999999999999999999999999999999999999988888888888888765432   


Q ss_pred             CCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          157 LTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       157 ~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      ...+++++++++.++.++.|..+.+++++|+|++||++|+.|++.+..+
T Consensus       462 ~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~~  510 (511)
T PRK13391        462 ALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWGN  510 (511)
T ss_pred             chHHHHHHHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhcc
Confidence            2347899999999999999999999999999999999999999988653

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=1.2e-34  Score=242.45  Aligned_cols=202  Identities=30%  Similarity=0.432  Sum_probs=172.2

Q ss_pred             CcccccCccceeccCC---ccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc-
Q 043808            1 GYGMTETCGVVTVENP---LLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII-   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~---~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~-   76 (206)
                      .||+||++..++....   ........++|+|++++.++|+| +++..++.|+.|||+++++.++.||++++..+...+ 
T Consensus       292 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~  370 (503)
T PRK04813        292 TYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFF  370 (503)
T ss_pred             CcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-CCCCCCCCCCceEEEEeccccccccCCChhHhHHhhc
Confidence            5999999876543211   11134456799999999999999 789999999999999999999999999988776554 


Q ss_pred             --cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC
Q 043808           77 --DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN  154 (206)
Q Consensus        77 --~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  154 (206)
                        ++.+||+|||++++ ++|.+++.||.+|+++++|+++++.+||+.+..+|+|.++++++.++...++.++++++..+.
T Consensus       371 ~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  449 (503)
T PRK04813        371 TFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEE  449 (503)
T ss_pred             cCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccc
Confidence              34569999999999 999999999999999999999999999999999999999999987766667788888887653


Q ss_pred             CC----CCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          155 SS----LTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       155 ~~----~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ..    ...+++++++.+.++.+++|..+++++++|+|++||++|++|++.+.+
T Consensus       450 ~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~  503 (503)
T PRK04813        450 DFEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVNK  503 (503)
T ss_pred             cccccchhHHHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhcC
Confidence            21    112578999999999999999999999999999999999999998753

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.6e-35  Score=289.94  Aligned_cols=199  Identities=25%  Similarity=0.357  Sum_probs=175.2

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc---
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID---   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~---   77 (206)
                      .||+||++..++............++|+|++++.++|+| ++++++|.|..|||+|+|+++++||+++++.+.+.|-   
T Consensus      1420 ~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p 1498 (4334)
T PRK05691       1420 RYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLD-AELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDP 1498 (4334)
T ss_pred             CCCcChheeeeeeeecccccCCCCcccceeCCCEEEEEC-CCCCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCC
Confidence            599999988776543222234467899999999999999 7799999999999999999999999999998877662   


Q ss_pred             ----CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCC
Q 043808           78 ----KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP  153 (206)
Q Consensus        78 ----~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  153 (206)
                          +.+||+|||++++++||.++|+||.|++||++|++|+|.+||+.|.++|+|.+++|+...+. .+..++++++...
T Consensus      1499 ~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~-~~~~lva~~~~~~ 1577 (4334)
T PRK05691       1499 LGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGA-AGAQLVGYYTGEA 1577 (4334)
T ss_pred             CCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCC-CCCEEEEEEEeCC
Confidence                34699999999999999999999999999999999999999999999999999999866544 4578889988776


Q ss_pred             CCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHH
Q 043808          154 NSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAK  201 (206)
Q Consensus       154 ~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~  201 (206)
                      ......+++++++++.|+.|++|..++++++||+|++||++|++|.+.
T Consensus      1578 ~~~~~~~~l~~~l~~~Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691       1578 GQEAEAERLKAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred             CCCCCHHHHHHHHHHhCccccCCcEEEEccccCCCCCCCcChhhcCcc
Confidence            666677899999999999999999999999999999999999998653

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.1e-34  Score=240.45  Aligned_cols=185  Identities=29%  Similarity=0.521  Sum_probs=164.3

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++..++....    ....++|+|++++.+++.+            |||+++|++++.||++++..+.... .++
T Consensus       270 ~YG~tE~~~~~~~~~~----~~~~~~G~~~~~~~~~i~~------------gel~v~g~~~~~gY~~~~~~~~~~~-~~~  332 (458)
T PRK09029        270 GYGLTEMASTVCAKRA----DGLAGVGSPLPGREVKLVD------------GEIWLRGASLALGYWRQGQLVPLVN-DEG  332 (458)
T ss_pred             cccccccCcceeccCC----CCCCCCCCCCCCCEEEEeC------------CEEEEecCceeeeeecCcccccccc-CCC
Confidence            5999999876654322    2245699999999999976            8999999999999999877665433 679


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++ +|.+++.||.+|+|+++|.+|+|.+||+.+.++++|.+++|++.+++..++.++++++..  ...+.+
T Consensus       333 ~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~--~~~~~~  409 (458)
T PRK09029        333 WFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESD--SEAAVV  409 (458)
T ss_pred             ccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcC--cccCHH
Confidence            99999999998 999999999999999999999999999999999999999999999988888899988765  345678


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      +++++++++++.+++|..+++++++|+|++||++|+.|++++++.
T Consensus       410 ~l~~~~~~~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~  454 (458)
T PRK09029        410 NLAEWLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQ  454 (458)
T ss_pred             HHHHHHHhhchhccCCeEEEEecccccCcCCCcCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999998865

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=1.8e-34  Score=243.76  Aligned_cols=197  Identities=36%  Similarity=0.669  Sum_probs=174.0

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeC-CCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCV-DTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~-~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~   79 (206)
                      .||+||++.+++..... ....++++|+|++++.+++.+. ++++.++.|+.|||++++++++.||++++..+.+.+ ..
T Consensus       343 ~YG~TE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~  420 (541)
T TIGR03205       343 GWGMTETCSPGTGHPPE-GPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAF-VG  420 (541)
T ss_pred             ccccccCCcccccCCCC-CCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccCChhhhHhhh-cc
Confidence            59999999877654322 2334678999999999888652 677899999999999999999999999988887777 57


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCC-CCC
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS-SLT  158 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~~~  158 (206)
                      +||+|||+++++++|.++++||.+|+|+++|.++++.+||+.+.+++.|.++++++.+++..++.+++++++.... ..+
T Consensus       421 ~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  500 (541)
T TIGR03205       421 DRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFS  500 (541)
T ss_pred             CCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCcCC
Confidence            8999999999999999999999999999999999999999999999999999999998887788889998877553 356


Q ss_pred             HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHH
Q 043808          159 KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELI  199 (206)
Q Consensus       159 ~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~  199 (206)
                      .+++.+++++.|++++.|..++++++||+|++||++|+.|+
T Consensus       501 ~~~l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~  541 (541)
T TIGR03205       501 LDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR  541 (541)
T ss_pred             HHHHHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence            78999999999999999999999999999999999999874

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.6e-34  Score=241.60  Aligned_cols=193  Identities=31%  Similarity=0.553  Sum_probs=171.0

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++..+.... ........++|+|+|++.++|+| +++++++.|+.|||+++|++.+.+|++.+..   .+ .++
T Consensus       323 ~YG~tE~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~---~~-~~g  396 (516)
T PRK13383        323 GYGSTEVGIGALATP-ADLRDAPETVGKPVAGCPVRILD-RNNRPVGPRVTGRIFVGGELAGTRYTDGGGK---AV-VDG  396 (516)
T ss_pred             cccccccccceeccc-cccccCCCcccCCCCCcEEEEEC-CCCCCCCCCCceEEEEecCcccccccCCchh---he-ecC
Confidence            599999987654332 22234567899999999999999 7789999999999999999999999986532   12 468


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|++++.||.+|+++++|.++++.+||+.|.+++.|.++++++.++...++.+.++|+..+....+..
T Consensus       397 ~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~  476 (516)
T PRK13383        397 MTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAA  476 (516)
T ss_pred             ceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999888888899999998776666778


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHH
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELI  199 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~  199 (206)
                      +++++++++++.++.|..++++++||+|++||++|++|.
T Consensus       477 ~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~  515 (516)
T PRK13383        477 QLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKELP  515 (516)
T ss_pred             HHHHHHHHhcccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence            999999999999999999999999999999999999874

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=5.4e-35  Score=287.70  Aligned_cols=199  Identities=24%  Similarity=0.293  Sum_probs=171.9

Q ss_pred             CcccccCccceeccCCccC--CCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc--
Q 043808            1 GYGMTETCGVVTVENPLLG--VQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII--   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~--   76 (206)
                      +||+|||+.++++......  .....++|+|++++.++|+| +.++++|.|.+|||+|+|+.+++||+++|+.+++.|  
T Consensus      4015 ~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~ 4093 (4334)
T PRK05691       4015 AYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVP 4093 (4334)
T ss_pred             CccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEEC-CCCCCCCCCCceEEEEecccccccccCCcccchhhccc
Confidence            5999999988865533221  22345799999999999999 889999999999999999999999999999998776  


Q ss_pred             -----cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEe
Q 043808           77 -----DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVR  151 (206)
Q Consensus        77 -----~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  151 (206)
                           .+.+||+|||++++++||.++|+||.|++||++|++|.+.+||+.+.++|+|.+++|.... ...++.++++++.
T Consensus      4094 ~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~~-~~~~~~l~a~~~~ 4172 (4334)
T PRK05691       4094 HPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQE-GVNGKHLVGYLVP 4172 (4334)
T ss_pred             CCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEec-CCCCcEEEEEEeC
Confidence                 2357999999999999999999999999999999999999999999999999999887654 3445788889887


Q ss_pred             CCCCCC---CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHH
Q 043808          152 SPNSSL---TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAK  201 (206)
Q Consensus       152 ~~~~~~---~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~  201 (206)
                      ......   ..++++.++++.||.|++|..+++++.||+|++||+||++|.+.
T Consensus      4173 ~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691       4173 HQTVLAQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred             CcccccchHHHHHHHHHHHhhCChhhcCcceeecccCCCCCCCcccHhhcCCC
Confidence            544322   24678999999999999999999999999999999999999754

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=3.4e-34  Score=248.81  Aligned_cols=202  Identities=23%  Similarity=0.288  Sum_probs=163.4

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCC--ceEEEEEcCC--CCcccCCChhhccccc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQ--VGELWVRGPI--LMPGYFNNEQATKLII   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~--~Gel~i~~~~--~~~~y~~~~~~~~~~~   76 (206)
                      .||+||+++.+...... ....++++|.|+++++++|+| ++|++++.|+  .|||++.++.  ...+|+++.. ....|
T Consensus       503 ~yG~TE~~~~~~~~~~~-~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf  579 (728)
T PLN03052        503 YCGGTELGGGFVTGSLL-QPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNADH-YKVYF  579 (728)
T ss_pred             eccChhhCcccccCCCC-CCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCchh-hhhhh
Confidence            59999998765433322 234567899999999999999 7899999985  5999998653  3346666532 23333


Q ss_pred             c------CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHh-cCCCcceeEEEeecCCCCC-ceeEEE
Q 043808           77 D------KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLV-SHPEILDAVVIPFPDPEAG-EVPIAY  148 (206)
Q Consensus        77 ~------~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~-~~~~v~~~~v~~~~~~~~~-~~~~~~  148 (206)
                      .      +..||+|||+++++++|.++++||.||+||++|++|++.+||+++. .+|.|.+++|++.+++..+ +.+++|
T Consensus       580 ~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~af  659 (728)
T PLN03052        580 KGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIA  659 (728)
T ss_pred             hcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEE
Confidence            1      2349999999999999999999999999999999999999999995 7899999999999987665 789999


Q ss_pred             EEeC--CCCCCCHHHHHH----HHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          149 VVRS--PNSSLTKEDVQK----FVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       149 v~~~--~~~~~~~~~l~~----~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      |++.  ++...+.++|++    ++++.+++++.|..|+++++||+|++||++|+.|++++.+.
T Consensus       660 Vvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~~~  722 (728)
T PLN03052        660 AVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQE  722 (728)
T ss_pred             EEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHHHHHHHhh
Confidence            9986  444445455555    45677888999999999999999999999999999988754

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.4e-34  Score=241.53  Aligned_cols=200  Identities=32%  Similarity=0.511  Sum_probs=173.4

Q ss_pred             CcccccCccceeccCCccC---------CCCCCcceeecCCceEEEEeCCCCCCCCCC--CceEEEEEcCCCCcccCCCh
Q 043808            1 GYGMTETCGVVTVENPLLG---------VQNSGSAGRLVAGVEAQIVCVDTLKPLPPN--QVGELWVRGPILMPGYFNNE   69 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~---------~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g--~~Gel~i~~~~~~~~y~~~~   69 (206)
                      .||+||++.+++.......         .....++|+|+++++++++| ++++.+|.+  ..|||+++++.++.||++. 
T Consensus       324 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~-  401 (542)
T PRK06018        324 AWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRV-  401 (542)
T ss_pred             eecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcC-
Confidence            4999999987654321110         01235789999999999999 678877753  5799999999999999983 


Q ss_pred             hhccccccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEE
Q 043808           70 QATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYV  149 (206)
Q Consensus        70 ~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v  149 (206)
                        +...++.++||+|||+++++++|.+++.||.+|+++++|.++++.+||+.+.+++.|.++++++.++...++.+.+++
T Consensus       402 --~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v  479 (542)
T PRK06018        402 --DGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIV  479 (542)
T ss_pred             --cccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEE
Confidence              233445789999999999999999999999999999999999999999999999999999999999887788889998


Q ss_pred             EeCCCCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          150 VRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      +..+....+.+++.+++++.++.+..|..++++++||+|++||++|++|++++.+
T Consensus       480 ~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~  534 (542)
T PRK06018        480 QLKPGETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKD  534 (542)
T ss_pred             EeCCCCCCCHHHHHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhc
Confidence            8877777778899999999999999999999999999999999999999999865

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=2.3e-34  Score=241.44  Aligned_cols=196  Identities=29%  Similarity=0.503  Sum_probs=173.7

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++++++....  .....+++|+|++++.++++| +++++++.|..|||++++++.+.+|++++..+...+ .++
T Consensus       309 ~YG~tE~~~~~~~~~~--~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~  384 (508)
T TIGR02262       309 GIGSTEMLHIFLSNLP--GDVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF-QGE  384 (508)
T ss_pred             CccccccCceeecCCc--cCCCCCCcCCCCCCcEEEEEC-CCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhh-hcC
Confidence            5999999986654322  233467899999999999999 889999999999999999999999999988887776 578


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCC---C
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS---L  157 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~  157 (206)
                      ||+|||+++++++|.+++.||.+|+++++|.++++.+||+.+.++++|.++++++.++....+.+.++++..+...   .
T Consensus       385 ~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  464 (508)
T TIGR02262       385 WTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTA  464 (508)
T ss_pred             ceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccc
Confidence            9999999999999999999999999999999999999999999999999999999877777777888887765443   3


Q ss_pred             CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHH
Q 043808          158 TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIA  200 (206)
Q Consensus       158 ~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~  200 (206)
                      ..+++++++++.|+.++.|..++++.++|+|++||++|+.|++
T Consensus       465 ~~~~i~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~  507 (508)
T TIGR02262       465 LETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLRE  507 (508)
T ss_pred             cHHHHHHHHHHhcccCCCCceEEEecCCCCCCCCcEehhhccC
Confidence            4678999999999999999999999999999999999999875

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=6.1e-35  Score=251.81  Aligned_cols=201  Identities=27%  Similarity=0.409  Sum_probs=162.1

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCC--CCCCCCCCCceEEEEEcCCCCcccCCChhhccccccC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVD--TLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDK   78 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~--~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~   78 (206)
                      +||+||+++.++..... .....+++|+|+|+++++|+|.+  .++.++.|+.|||+|+||+++.||+++|+.+++.| .
T Consensus       417 ~YG~TE~~~~~~~~~~~-~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~  494 (666)
T PLN02614        417 GYGLTESCAGTFVSLPD-ELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVL-I  494 (666)
T ss_pred             eCchHhhhhheeeeccc-cCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhh-c
Confidence            59999998655443322 12346899999999999999843  34788999999999999999999999999998888 5


Q ss_pred             CCeEecCceEEEecCCcEEEeccccceEEE-CCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCC--
Q 043808           79 EGWLHTGDLGYFDEHGQLFIVDRIKELIKC-NGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS--  155 (206)
Q Consensus        79 ~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--  155 (206)
                      +|||+|||++++|+||.++|+||.+|+||+ +|++|+|.+||+.+.++|.|.+++|++....   ..++++|++....  
T Consensus       495 dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~---~~l~alvv~~~~~~~  571 (666)
T PLN02614        495 DGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFE---SFLVAIANPNQQILE  571 (666)
T ss_pred             cCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEeCCHHHHH
Confidence            899999999999999999999999999996 7999999999999999999999999986532   2478888765321  


Q ss_pred             --------CCC----------HHHHHHHH-----HHhccccCceeEEEEeC-Cc-----CCCCCCcccHHHHHHHHHccC
Q 043808          156 --------SLT----------KEDVQKFV-----VKQVARYKRLRNVTFTN-SI-----PKTTSGKILRRELIAKLRSKI  206 (206)
Q Consensus       156 --------~~~----------~~~l~~~~-----~~~l~~~~~p~~~~~v~-~~-----P~t~~GKv~r~~l~~~~~~~~  206 (206)
                              ..+          .+.+.+.+     .+.|+.+.+++.|+++. .|     -+||++|+.|..+.+.|++.|
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i  651 (666)
T PLN02614        572 RWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVI  651 (666)
T ss_pred             HHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHH
Confidence                    001          11223333     34599999999999874 33     379999999999999998764

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-34  Score=244.85  Aligned_cols=177  Identities=31%  Similarity=0.540  Sum_probs=155.0

Q ss_pred             CcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCCeEecCceEEEecCCcEEEecccc
Q 043808           24 GSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIK  103 (206)
Q Consensus        24 ~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d  103 (206)
                      .++|+|+|++.++++| ++++.++.|..|||+++|+.++.||+++ ..+...+..++||+|||++++ ++|.++++||.|
T Consensus       385 ~~vG~~~p~~~v~i~d-~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~d  461 (579)
T PRK09192        385 VNCGKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAK  461 (579)
T ss_pred             eecCCcCCCcEEEEEC-CCCCCCCCCCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccc
Confidence            4789999999999999 6789999999999999999999999998 555555557899999999999 999999999999


Q ss_pred             ceEEECCeEeChHHHHHHHhcCCCcc--eeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHHhcc-ccCceeEEE
Q 043808          104 ELIKCNGFQVAPAELEGVLVSHPEIL--DAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVA-RYKRLRNVT  180 (206)
Q Consensus       104 d~i~~~G~~v~~~~ie~~i~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~-~~~~p~~~~  180 (206)
                      |+|+++|++|+|.+||+.++++|+|.  ++++++.+++. ++.++++++..+....+.++|.+++.+.+. .+..|..+.
T Consensus       462 d~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~  540 (579)
T PRK09192        462 DLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEAAVE  540 (579)
T ss_pred             cEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCCceEE
Confidence            99999999999999999999999998  88898888765 457777777665555566789999998875 578888777


Q ss_pred             EeC--CcCCCCCCcccHHHHHHHHHc
Q 043808          181 FTN--SIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       181 ~v~--~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ++.  .||+|++||++|++|++++.+
T Consensus       541 ~~~~~~lP~t~~GKv~R~~l~~~~~~  566 (579)
T PRK09192        541 LVPPHSLPRTSSGKLSRAKAKKRYLS  566 (579)
T ss_pred             EeCCCCcCCCCCcchhHHHHHHHHHc
Confidence            774  899999999999999998764

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=1.4e-33  Score=255.99  Aligned_cols=195  Identities=27%  Similarity=0.388  Sum_probs=165.1

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++..++....  .....+++|+|+|++++++.+.+ +    .++.|||+++|++++.||++++.........++
T Consensus       938 ~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~g~~~~~~~~~-~----~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g 1010 (1140)
T PRK06814        938 GYGVTETAPVIALNTP--MHNKAGTVGRLLPGIEYRLEPVP-G----IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADG 1010 (1140)
T ss_pred             ccccccccceEEecCC--CCCCCCcCCccCCCCeEEEeecC-C----CCCceEEEEeCCCcchhhcCCCCCCccccCCCC
Confidence            5999999987765432  23456789999999999998732 2    367799999999999999987543322222578


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||++++|+||.++++||.||+||++|++|+|.+||+.+.+++.+.++++++.+++..++.+++++.   ....+.+
T Consensus      1011 ~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~---~~~~~~~ 1087 (1140)
T PRK06814       1011 WYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT---ASDATRA 1087 (1140)
T ss_pred             eEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc---CCCcCHH
Confidence            9999999999999999999999999999999999999999999999999999999988888888776654   3345678


Q ss_pred             HHHHHHHHh-ccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          161 DVQKFVVKQ-VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       161 ~l~~~~~~~-l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      ++.+++.+. ++.+++|..+++++++|+|++||++|++|++++.+.
T Consensus      1088 ~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 1133 (1140)
T PRK06814       1088 AFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEA 1133 (1140)
T ss_pred             HHHHHHHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHh
Confidence            899999875 999999999999999999999999999999987764

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=5.3e-34  Score=245.91  Aligned_cols=201  Identities=26%  Similarity=0.401  Sum_probs=160.6

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeC-CCC-CCCCCCCceEEEEEcCCCCcccCCChhhccccccC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCV-DTL-KPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDK   78 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~-~~~-~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~   78 (206)
                      +||+||+++.++..... .....+++|+|+|+++++++|. +.+ ...+.+..|||+++||+++.||+++++.+++.| .
T Consensus       414 ~YG~TE~~~~~~~~~~~-~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~  491 (660)
T PLN02861        414 GYGLTESCGGCFTSIAN-VFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-I  491 (660)
T ss_pred             ecchhhhhhceeecccc-cCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhh-h
Confidence            59999998766544322 1234679999999999999983 333 334556679999999999999999999998888 5


Q ss_pred             CCeEecCceEEEecCCcEEEeccccceEEE-CCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCC--
Q 043808           79 EGWLHTGDLGYFDEHGQLFIVDRIKELIKC-NGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS--  155 (206)
Q Consensus        79 ~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--  155 (206)
                      +|||+|||++++|+||.++|.||.+|+||+ +|++|+|.+||+.+.++|.|.+++|++.+.   ++.++++|++....  
T Consensus       492 dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~---~~~~~A~vv~~~~~l~  568 (660)
T PLN02861        492 DGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF---ESFLVAVVVPDRQALE  568 (660)
T ss_pred             ccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC---cceeEEEEEcCHHHHH
Confidence            899999999999999999999999999997 799999999999999999999999998752   35688888875220  


Q ss_pred             --------CCCH----------HHHHHHHHH-----hccccCceeEEEEe-CCc-----CCCCCCcccHHHHHHHHHccC
Q 043808          156 --------SLTK----------EDVQKFVVK-----QVARYKRLRNVTFT-NSI-----PKTTSGKILRRELIAKLRSKI  206 (206)
Q Consensus       156 --------~~~~----------~~l~~~~~~-----~l~~~~~p~~~~~v-~~~-----P~t~~GKv~r~~l~~~~~~~~  206 (206)
                              ..+.          ..+.+.+.+     .+..+..++.+.+. ..|     .+|+++|+.|+.+.+.|+++|
T Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I  648 (660)
T PLN02861        569 DWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCI  648 (660)
T ss_pred             HHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHH
Confidence                    0111          123333332     37888899988885 456     799999999999999998765

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-33  Score=252.70  Aligned_cols=190  Identities=19%  Similarity=0.196  Sum_probs=157.1

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCc-eEEEE--eC--------CCC--CCCCCCCceEEEEEcCCCCcccCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGV-EAQIV--CV--------DTL--KPLPPNQVGELWVRGPILMPGYFN   67 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~--~~--------~~~--~~~~~g~~Gel~i~~~~~~~~y~~   67 (206)
                      +||+||++.+++..    ....++++|+|+|++ .++|.  |+        ++|  +.++.|+.|||+++++..    + 
T Consensus       750 ~YG~TE~~~~~~~~----~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-  820 (994)
T PRK07868        750 FFATTDGQAVLANV----SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-  820 (994)
T ss_pred             eeeccccccccccc----CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-
Confidence            59999987654321    124567899999997 66653  11        344  567889999999998753    2 


Q ss_pred             Chhhc--cccc-cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCce
Q 043808           68 NEQAT--KLII-DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEV  144 (206)
Q Consensus        68 ~~~~~--~~~~-~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~  144 (206)
                      ++..+  +..| ++++||+|||++++|+||.++|+||.||+||++|.+|+|.+||+.|.++|.|.+++|++.+++. ++.
T Consensus       821 ~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~  899 (994)
T PRK07868        821 DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQL  899 (994)
T ss_pred             ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-Cce
Confidence            23322  2233 2479999999999999999999999999999999999999999999999999999999998765 577


Q ss_pred             eEEEEEeCCCCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHH
Q 043808          145 PIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAK  201 (206)
Q Consensus       145 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~  201 (206)
                      ++++|++.+....+.++|++++++ ++.|++|..++++++||+|++||++|++|++.
T Consensus       900 ~~a~Vv~~~~~~~~~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~  955 (994)
T PRK07868        900 AVAAVTLRPGAAITAADLTEALAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAA  955 (994)
T ss_pred             EEEEEEeCCCCcCCHHHHHHHHHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhc
Confidence            889998887767788999999986 99999999999999999999999999999875

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-33  Score=240.96  Aligned_cols=198  Identities=23%  Similarity=0.274  Sum_probs=157.4

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecC----CceEEEEeCCC--------C--CCCCCCCceEEE--EEcCCCCcc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVA----GVEAQIVCVDT--------L--KPLPPNQVGELW--VRGPILMPG   64 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~----~~~~~i~~~~~--------~--~~~~~g~~Gel~--i~~~~~~~~   64 (206)
                      .||+||++..++..     .....++|++.+    +..+...+.+.        +  ..++.|+.|||+  +.+++++.|
T Consensus       344 ~YG~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~G  418 (600)
T PRK08279        344 FYAASEGNVGFINV-----FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDG  418 (600)
T ss_pred             eecccccceeeccc-----CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCcccccc
Confidence            59999998654322     123456676665    33333222222        2  357889999998  778999999


Q ss_pred             cCCChhhccccc------cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecC
Q 043808           65 YFNNEQATKLII------DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPD  138 (206)
Q Consensus        65 y~~~~~~~~~~~------~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~  138 (206)
                      | +++..+...+      ++++||+|||+++++++|.+++.||.+|+||++|++|+|.+||+.+.++|+|.+++|++.+.
T Consensus       419 Y-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~  497 (600)
T PRK08279        419 Y-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEV  497 (600)
T ss_pred             c-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeec
Confidence            9 7776664432      24689999999999999999999999999999999999999999999999999999999876


Q ss_pred             CC-CCceeEEEEEeCCCCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          139 PE-AGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       139 ~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      +. .+...+++++..+....+.++++++++++|+.++.|..++++++||+|++||++|++|++++.+
T Consensus       498 ~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  564 (600)
T PRK08279        498 PGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFD  564 (600)
T ss_pred             CCCCCccceeEEEecCCccCCHHHHHHHHHhhCccccCCeEEEeecCCCCCcchhhhHHHHhhcCCC
Confidence            54 3444555555555556678999999999999999999999999999999999999999987654

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=2.1e-33  Score=238.66  Aligned_cols=202  Identities=35%  Similarity=0.591  Sum_probs=168.4

Q ss_pred             CcccccCccceeccCCc--------cC-CCCCCcceeecCCce-EEEEeCCCCCCCCCC--CceEEEEEcCCCCcccCCC
Q 043808            1 GYGMTETCGVVTVENPL--------LG-VQNSGSAGRLVAGVE-AQIVCVDTLKPLPPN--QVGELWVRGPILMPGYFNN   68 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~--------~~-~~~~~~~G~p~~~~~-~~i~~~~~~~~~~~g--~~Gel~i~~~~~~~~y~~~   68 (206)
                      .||+||+++.++.....        .. .......|.+.++.. ++++|++++++++.+  ..|||+++++.++.||+++
T Consensus       340 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~  419 (567)
T PLN02479        340 TYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKN  419 (567)
T ss_pred             ccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcC
Confidence            59999996654332100        00 011235677888875 788887778888764  5799999999999999999


Q ss_pred             hhhccccccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEE
Q 043808           69 EQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAY  148 (206)
Q Consensus        69 ~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~  148 (206)
                      +..++..+ .++||+|||+++++++|.++|+||.+|+|+++|++|++.+||..+.+++.|.+++|++.++...++.++++
T Consensus       420 ~~~t~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  498 (567)
T PLN02479        420 PKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAF  498 (567)
T ss_pred             cccccchh-cCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEE
Confidence            99988877 67899999999999999999999999999999999999999999999999999999999887777889999


Q ss_pred             EEeCCCCC-----CCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          149 VVRSPNSS-----LTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       149 v~~~~~~~-----~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      +++.....     ...++|.+++.++|+.++.|..+++ .++|+|++||++|+.|++.+.+
T Consensus       499 v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gKv~r~~L~~~~~~  558 (567)
T PLN02479        499 VTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATGKIQKHVLRAKAKE  558 (567)
T ss_pred             EEecCcccccchhhhHHHHHHHHHhhcccccCCceEEe-ccCCCCCccCeeHHHHHHHHHh
Confidence            98765432     3346899999999999999998776 7899999999999999988765

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=3.6e-33  Score=229.84  Aligned_cols=188  Identities=37%  Similarity=0.666  Sum_probs=160.1

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++..++..........+ ++|+|++++++++...+.      ++.|||+++++.++.||++++..+...+ .++
T Consensus       249 ~YG~tE~~~~~~~~~~~~~~~~~-~~G~~~~~~~~~i~~~~~------~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~  320 (436)
T TIGR01923       249 SYGMTETCSQVTTATPEMLHARP-DVGRPLAGREIKIKVDNK------EGHGEIMVKGANLMKGYLYQGELTPAFE-QQG  320 (436)
T ss_pred             EecCCccchhccCcCcccccccc-CCCccCCCcEEEEEeCCC------CCceEEEEECCccchhhCCChhhhhhhh-cCC
Confidence            49999998876554332222222 489999999999844122      2679999999999999999777665544 679


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||++++++||.+++.||.+|++|++|+++++.+||+.+..++.|.+++++..++...+..+.++++...  ..+..
T Consensus       321 ~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~--~~~~~  398 (436)
T TIGR01923       321 WFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSES--DISQA  398 (436)
T ss_pred             CeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECC--CCCHH
Confidence            9999999999999999999999999999999999999999999999999999998887777778888887764  35678


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHH
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL  198 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l  198 (206)
                      ++.+++.+.++.+++|..++++++||+|++||++|++|
T Consensus       399 ~l~~~l~~~l~~~~~p~~i~~~~~iP~t~~GK~~r~~L  436 (436)
T TIGR01923       399 KLIAYLTEKLAKYKVPIAFEKLDELPYNASGKILRNQL  436 (436)
T ss_pred             HHHHHHHHhhhCCCCCeEEEEecCCCCCCCCceecccC
Confidence            99999999999999999999999999999999999865

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.3e-33  Score=233.77  Aligned_cols=202  Identities=36%  Similarity=0.556  Sum_probs=169.5

Q ss_pred             CcccccCccceeccCCcc---------CCCCCCcceeecCC-ceEEEEeCCCCCCCCC-C-CceEEEEEcCCCCcccCCC
Q 043808            1 GYGMTETCGVVTVENPLL---------GVQNSGSAGRLVAG-VEAQIVCVDTLKPLPP-N-QVGELWVRGPILMPGYFNN   68 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~---------~~~~~~~~G~p~~~-~~~~i~~~~~~~~~~~-g-~~Gel~i~~~~~~~~y~~~   68 (206)
                      .||+||+++.++......         ......++|.+++. ..++++|++++++++. | ..|||++++++++.||+++
T Consensus       326 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~  405 (545)
T PRK08162        326 VYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKN  405 (545)
T ss_pred             cccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCC
Confidence            599999965554321110         01122455666553 4577888778888876 3 4699999999999999999


Q ss_pred             hhhccccccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEE
Q 043808           69 EQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAY  148 (206)
Q Consensus        69 ~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~  148 (206)
                      +..+...+ .++||+|||+++++++|.++++||.+|+++++|.+|++.+||+.|..++.|.++++++.++...++.++++
T Consensus       406 ~~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~  484 (545)
T PRK08162        406 PKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAF  484 (545)
T ss_pred             hhhhHHHh-hCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEE
Confidence            99888777 67899999999999999999999999999999999999999999999999999999999887777889999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          149 VVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       149 v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      +++.+....+.++|++++++.|+.++.|..+++ .++|+|++||++|+.|++++.+
T Consensus       485 v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gK~~r~~l~~~~~~  539 (545)
T PRK08162        485 VELKDGASATEEEIIAHCREHLAGFKVPKAVVF-GELPKTSTGKIQKFVLREQAKS  539 (545)
T ss_pred             EEeCCCCCCCHHHHHHHHHHhcccccCCcEEEe-cccCCCCCcCCcHHHHHHHHhh
Confidence            988776666788999999999999999998875 6899999999999999998764

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-32  Score=231.07  Aligned_cols=199  Identities=22%  Similarity=0.303  Sum_probs=170.7

Q ss_pred             CcccccCccceeccCCccCCCCCCcce--eecCCceEEEEeCCCCCCCCCCCc--eEEEEEcCCCCcccCCChhhccccc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAG--RLVAGVEAQIVCVDTLKPLPPNQV--GELWVRGPILMPGYFNNEQATKLII   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G--~p~~~~~~~i~~~~~~~~~~~g~~--Gel~i~~~~~~~~y~~~~~~~~~~~   76 (206)
                      .||+||++.+++.....    .....|  ++.++..+++++ +++++++.|..  |+++ .++.++.||++++..+...|
T Consensus       328 ~YG~tE~~~~~~~~~~~----~~~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f  401 (533)
T PRK07798        328 SIGSSETGFGGSGTVAK----GAVHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETF  401 (533)
T ss_pred             eecccccccccccCCCC----CCccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhh
Confidence            49999997665433221    112233  788999999999 67788998887  7776 45688999999988876655


Q ss_pred             ---cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCC
Q 043808           77 ---DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP  153 (206)
Q Consensus        77 ---~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  153 (206)
                         ++.+||+|||+++++++|.+++.||.+|+++.+|++|++.+||+.+.+++.|.++++++.++...++.+.+++++.+
T Consensus       402 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  481 (533)
T PRK07798        402 PTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLRE  481 (533)
T ss_pred             ccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECC
Confidence               23569999999999999999999999999999999999999999999999999999999888777888888888877


Q ss_pred             CCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          154 NSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       154 ~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      ....+.+++++++++.|+.+++|..+++++++|+|++||++|+.|+++++++
T Consensus       482 ~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~~~~~~~~~  533 (533)
T PRK07798        482 GARPDLAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRWAKEQAAER  533 (533)
T ss_pred             CCCCCHHHHHHHHhhhcccCCCCeEEEEcccCCCCCcchhhHHHHhhhhccC
Confidence            6667889999999999999999999999999999999999999999998764

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=1.3e-32  Score=238.44  Aligned_cols=201  Identities=26%  Similarity=0.418  Sum_probs=157.5

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCC-CC--CCCCceEEEEEcCCCCcccCCChhhccccc-
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLK-PL--PPNQVGELWVRGPILMPGYFNNEQATKLII-   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~-~~--~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~-   76 (206)
                      +||+||+++.++.....  ....+++|+|+|+++++|+|.++++ .+  +.+..|||+++||+++.||+++++.+++.| 
T Consensus       451 ~YG~TEt~~~~~~~~~~--~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~  528 (696)
T PLN02387        451 GYGLTETCAGATFSEWD--DTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYK  528 (696)
T ss_pred             eechhhcccceeecCcc--cCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhc
Confidence            59999998777654332  3456899999999999999854443 22  233469999999999999999999998876 


Q ss_pred             -cCCC--eEecCceEEEecCCcEEEeccccceEEE-CCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeC
Q 043808           77 -DKEG--WLHTGDLGYFDEHGQLFIVDRIKELIKC-NGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRS  152 (206)
Q Consensus        77 -~~~~--~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  152 (206)
                       +.+|  ||+|||++++++||++++.||.+|+||+ +|++|+|.+||+.+.++|.|.+++|++.+.   ...++++|++.
T Consensus       529 ~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~~a~vv~~  605 (696)
T PLN02387        529 VDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPF---HSYCVALVVPS  605 (696)
T ss_pred             cccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCC---cceEEEEEEeC
Confidence             3344  9999999999999999999999999997 699999999999999999999999997652   23577788765


Q ss_pred             CCC----------C-CC----------HHHHHHHH-----HHhccccCceeEEEEeCCcC------CCCCCcccHHHHHH
Q 043808          153 PNS----------S-LT----------KEDVQKFV-----VKQVARYKRLRNVTFTNSIP------KTTSGKILRRELIA  200 (206)
Q Consensus       153 ~~~----------~-~~----------~~~l~~~~-----~~~l~~~~~p~~~~~v~~~P------~t~~GKv~r~~l~~  200 (206)
                      ...          . .+          .+++.+.+     ...|..+++|+.|.++.+-.      +|++.|+.|+.+++
T Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~  685 (696)
T PLN02387        606 QQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRK  685 (696)
T ss_pred             HHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHH
Confidence            321          0 01          12223333     23589999999998885422      68899999999999


Q ss_pred             HHHccC
Q 043808          201 KLRSKI  206 (206)
Q Consensus       201 ~~~~~~  206 (206)
                      .|++.|
T Consensus       686 ~y~~~i  691 (696)
T PLN02387        686 KFKDDL  691 (696)
T ss_pred             HHHHHH
Confidence            998865

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.4e-32  Score=230.92  Aligned_cols=176  Identities=30%  Similarity=0.486  Sum_probs=142.4

Q ss_pred             ceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc-----------CCCeEecCceEEEecCC
Q 043808           26 AGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID-----------KEGWLHTGDLGYFDEHG   94 (206)
Q Consensus        26 ~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~-----------~~~~~~TGDl~~~~~~g   94 (206)
                      .|.|. +..++++|+++++.++.|+.|||+++|++++.||+++++.++..|.           .++||+|||+++++ +|
T Consensus       373 ~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G  450 (578)
T PRK05850        373 YGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EG  450 (578)
T ss_pred             ccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CC
Confidence            34443 5788999977789999999999999999999999999998877663           24799999999997 89


Q ss_pred             cEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCC------HHHHHHHHHH
Q 043808           95 QLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLT------KEDVQKFVVK  168 (206)
Q Consensus        95 ~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~~  168 (206)
                      .++++||.+|+|+++|++|+|.+||+.|.+++.+ ++++++.++. .++.++++++.......+      ...+++.+..
T Consensus       451 ~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~  528 (578)
T PRK05850        451 ELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTS  528 (578)
T ss_pred             EEEEEcccccEEEECCeecCHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEeccccCcchhhhhhHHHHHHHHHH
Confidence            9999999999999999999999999999999985 4777777776 567888888876553322      2355666655


Q ss_pred             hccc--cCceeEEEEe--CCcCCCCCCcccHHHHHHHHHcc
Q 043808          169 QVAR--YKRLRNVTFT--NSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       169 ~l~~--~~~p~~~~~v--~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      .+..  ...|..++++  +.||+|++||++|++|+++|.+.
T Consensus       529 ~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~  569 (578)
T PRK05850        529 AISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQD  569 (578)
T ss_pred             HHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHcC
Confidence            5543  2346656666  48999999999999999998753

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.1e-32  Score=236.15  Aligned_cols=200  Identities=23%  Similarity=0.317  Sum_probs=159.5

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeec-CCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLV-AGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~   79 (206)
                      +||+||+++.++....  ....++++|+|+ |+++++++|.++....+.+..|||+++||+++.||+++|+.+++.|+.+
T Consensus       492 gYGlTEt~~~~~~~~~--~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~d  569 (746)
T PTZ00342        492 GYGLTETTGPIFVQHA--DDNNTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTED  569 (746)
T ss_pred             eeccCcccceeeeccC--CCCCcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcC
Confidence            6999999877665433  234678999998 9999999986555444555679999999999999999999999999789


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEE-CCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCC---
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKC-NGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS---  155 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~---  155 (206)
                      |||+|||++++++||+++|+||.+|+||+ +|++|+|.+||+.+.++|.|.+++|++..   ....++++|++....   
T Consensus       570 GW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~---~~~~~~Alvv~d~~~~~~  646 (746)
T PTZ00342        570 GYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDD---SMDGPLAIISVDKYLLFK  646 (746)
T ss_pred             CcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccC---CccccEEEEECCHHHHHH
Confidence            99999999999999999999999999996 79999999999999999999999999853   233578888765310   


Q ss_pred             -----------CC---CH---------------HHHHHHH-----HHhccccCceeEEEEeC-Cc----CCCCCCcccHH
Q 043808          156 -----------SL---TK---------------EDVQKFV-----VKQVARYKRLRNVTFTN-SI----PKTTSGKILRR  196 (206)
Q Consensus       156 -----------~~---~~---------------~~l~~~~-----~~~l~~~~~p~~~~~v~-~~----P~t~~GKv~r~  196 (206)
                                 ..   +.               +.+.+.+     ...|.++.+++.|.++. .|    -+||+.|+.|+
T Consensus       647 ~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~  726 (746)
T PTZ00342        647 CLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRF  726 (746)
T ss_pred             HHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHH
Confidence                       00   00               1112222     22588999999888872 33    27999999999


Q ss_pred             HHHHHHHcc
Q 043808          197 ELIAKLRSK  205 (206)
Q Consensus       197 ~l~~~~~~~  205 (206)
                      .+.+.|+..
T Consensus       727 ~v~~~y~~~  735 (746)
T PTZ00342        727 YVFKDYAFF  735 (746)
T ss_pred             HHHHHHHHH
Confidence            999988854

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.3e-32  Score=237.16  Aligned_cols=201  Identities=26%  Similarity=0.469  Sum_probs=155.5

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCC-CCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTL-KPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~-~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~   79 (206)
                      +||+||+++.++....  .....+++|+|+|+++++|+|.+.. ...+.+..|||+|+||+++.||+++++.+++.|+.+
T Consensus       458 ~YG~TEt~~~~~~~~~--~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~d  535 (700)
T PTZ00216        458 GWGLTETVCCGGIQRT--GDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDED  535 (700)
T ss_pred             ccCcccccccccccCC--CCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhcccc
Confidence            6999999877654433  2345789999999999999995432 233455679999999999999999999999988888


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEE-ECCeEeChHHHHHHHhcCCCccee--EEEeecCCCCCceeEEEEEeCCCC-
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIK-CNGFQVAPAELEGVLVSHPEILDA--VVIPFPDPEAGEVPIAYVVRSPNS-  155 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~-~~G~~v~~~~ie~~i~~~~~v~~~--~v~~~~~~~~~~~~~~~v~~~~~~-  155 (206)
                      |||+|||++++++||.++|+||.+|+|| .+|++|.|.+||+.+.++|.|.++  +++..++   ...+++++++.... 
T Consensus       536 Gw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~---~~~l~a~vv~~~~~~  612 (700)
T PTZ00216        536 GWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPA---RSYICALVLTDEAKA  612 (700)
T ss_pred             CCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecC---CceEEEEEecCHHHH
Confidence            9999999999999999999999999999 799999999999999999999973  3433322   25677887764210 


Q ss_pred             ---------CCC----------HHHHHHHHH-----HhccccCceeEEEEeC------CcCCCCCCcccHHHHHHHHHcc
Q 043808          156 ---------SLT----------KEDVQKFVV-----KQVARYKRLRNVTFTN------SIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       156 ---------~~~----------~~~l~~~~~-----~~l~~~~~p~~~~~v~------~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                               ..+          .+.+.+.+.     ..+..+.+++.++++.      .=-+|+++|+.|+.+++.|++.
T Consensus       613 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~  692 (700)
T PTZ00216        613 MAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADL  692 (700)
T ss_pred             HHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHH
Confidence                     001          012222222     2477788899888872      2336999999999999999876


Q ss_pred             C
Q 043808          206 I  206 (206)
Q Consensus       206 ~  206 (206)
                      |
T Consensus       693 i  693 (700)
T PTZ00216        693 I  693 (700)
T ss_pred             H
Confidence            4

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.8e-32  Score=234.84  Aligned_cols=192  Identities=26%  Similarity=0.368  Sum_probs=158.0

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      +||+||++++++.....  ....+++|+|+|+++++++| +       +..|||+++|++++.||+++++.+...|+.+|
T Consensus       371 ~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~d-~-------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dg  440 (614)
T PRK08180        371 GLGMTETAPSATFTTGP--LSRAGNIGLPAPGCEVKLVP-V-------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEG  440 (614)
T ss_pred             eecccccCCceEecccc--cCCCCcccCccCCcEEEEec-C-------CCCcEEEEecCccchhhcCChhHhHhhcccCC
Confidence            59999998877654332  34578999999999999987 2       34599999999999999999999988887789


Q ss_pred             eEecCceEEE----ecCCcEEEeccccceEEE-CCeEeC--hHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCC
Q 043808           81 WLHTGDLGYF----DEHGQLFIVDRIKELIKC-NGFQVA--PAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP  153 (206)
Q Consensus        81 ~~~TGDl~~~----~~~g~l~~~GR~dd~i~~-~G~~v~--~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  153 (206)
                      ||+|||++++    +++|.++|+||.+|+|++ +|++++  +.++|..+.++|.|.+++|++.+++    .+.++|++.+
T Consensus       441 w~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~----~~~a~V~~~~  516 (614)
T PRK08180        441 YYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRD----EIGLLVFPNL  516 (614)
T ss_pred             ceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCC----ceEEEEEcCH
Confidence            9999999999    468999999999998885 798776  7788899999999999999988764    4667777654


Q ss_pred             CC---------------CCCHHHHHHHHHHhccccC--------ceeEEEEeCCcCCC------CCCcccHHHHHHHHHc
Q 043808          154 NS---------------SLTKEDVQKFVVKQVARYK--------RLRNVTFTNSIPKT------TSGKILRRELIAKLRS  204 (206)
Q Consensus       154 ~~---------------~~~~~~l~~~~~~~l~~~~--------~p~~~~~v~~~P~t------~~GKv~r~~l~~~~~~  204 (206)
                      ..               ..+.++|++++.+.+..++        .|+.+++++.+|++      ++||+.|+++.+.|++
T Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~  596 (614)
T PRK08180        517 DACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAA  596 (614)
T ss_pred             HHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHH
Confidence            31               1234678888888888777        89999999999986      4567899999999987


Q ss_pred             cC
Q 043808          205 KI  206 (206)
Q Consensus       205 ~~  206 (206)
                      .|
T Consensus       597 ~i  598 (614)
T PRK08180        597 LV  598 (614)
T ss_pred             HH
Confidence            64

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.98  E-value=1e-31  Score=231.63  Aligned_cols=201  Identities=31%  Similarity=0.423  Sum_probs=159.6

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeC-CCC-CCCCCCCceEEEEEcCCCCcccCCChhhccccccC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCV-DTL-KPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDK   78 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~-~~~-~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~   78 (206)
                      +||+||+++.++...... ...++++|+|++++++++.+. +.+ ..++.+..|||+|+||+++.||+++++.++..+ .
T Consensus       414 ~YG~TE~~~~~~~~~~~~-~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~  491 (660)
T PLN02430        414 GYGLTETLGPTTLGFPDE-MCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-K  491 (660)
T ss_pred             ecchhhhhhceEeecccc-CCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhh-h
Confidence            599999988776543321 234689999999999999873 333 455666789999999999999999999998887 6


Q ss_pred             CCeEecCceEEEecCCcEEEeccccceEEE-CCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCC--
Q 043808           79 EGWLHTGDLGYFDEHGQLFIVDRIKELIKC-NGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS--  155 (206)
Q Consensus        79 ~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--  155 (206)
                      +|||+|||++++++||.+++.||.+|+||+ +|++|+|.+||+.+.++|.|.+++|++..   .+..++++|++....  
T Consensus       492 dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~~~~~  568 (660)
T PLN02430        492 DGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENTN  568 (660)
T ss_pred             ccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCHHHHH
Confidence            899999999999999999999999999997 79999999999999999999999999732   346788888875321  


Q ss_pred             --------CCC----------HHHHHHHHH-----HhccccCceeEEEEeC-Cc-----CCCCCCcccHHHHHHHHHccC
Q 043808          156 --------SLT----------KEDVQKFVV-----KQVARYKRLRNVTFTN-SI-----PKTTSGKILRRELIAKLRSKI  206 (206)
Q Consensus       156 --------~~~----------~~~l~~~~~-----~~l~~~~~p~~~~~v~-~~-----P~t~~GKv~r~~l~~~~~~~~  206 (206)
                              ..+          .+.+.+.+.     +.|+.+.+++.+++.. .|     .+|+++|+.|+.+.+.|++.|
T Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i  648 (660)
T PLN02430        569 KWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEI  648 (660)
T ss_pred             HHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHH
Confidence                    001          112222222     3488999999888874 33     489999999999999998764

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.98  E-value=2.6e-31  Score=224.72  Aligned_cols=201  Identities=27%  Similarity=0.432  Sum_probs=156.5

Q ss_pred             CcccccCccceeccCCccC------------------------CCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEE
Q 043808            1 GYGMTETCGVVTVENPLLG------------------------VQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWV   56 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~------------------------~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i   56 (206)
                      .||+||++..++.......                        ...+.++|+|++++.++++| ++++.++.|+.|||++
T Consensus       313 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~~Gel~v  391 (545)
T PRK07768        313 AYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRGVGVIEL  391 (545)
T ss_pred             cccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCCEEEEEE
Confidence            5999999876654322100                        11345789999999999999 7789999999999999


Q ss_pred             EcCCCCcccCCChhhccccccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEee
Q 043808           57 RGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPF  136 (206)
Q Consensus        57 ~~~~~~~~y~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~  136 (206)
                      +++.++.||++.+.... ..+.++||+|||+++++++|.++++||.+|+++++|.++++.+||+.+.++++|.++++++.
T Consensus       392 ~~~~~~~gy~~~~~~~~-~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~  470 (545)
T PRK07768        392 RGESVTPGYLTMDGFIP-AQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAV  470 (545)
T ss_pred             ccCcccccccCCCCCcc-cccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccceEEEE
Confidence            99999999998544433 33367899999999999999999999999999999999999999999999999999877665


Q ss_pred             c--CCCCCceeEEEEEeCCCCC-CCHHHHHHHHHHhcccc--CceeEEEEeC--CcCCCCCCcccHHHHHHHHH
Q 043808          137 P--DPEAGEVPIAYVVRSPNSS-LTKEDVQKFVVKQVARY--KRLRNVTFTN--SIPKTTSGKILRRELIAKLR  203 (206)
Q Consensus       137 ~--~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~~~l~~~--~~p~~~~~v~--~~P~t~~GKv~r~~l~~~~~  203 (206)
                      .  +...++.+++++....... ....++.+.+++.+...  ..|..+.++.  .||+|++||++|+.|+++|.
T Consensus       471 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~  544 (545)
T PRK07768        471 RLDAGHSREGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAELVT  544 (545)
T ss_pred             EecCCCCceEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCCccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence            4  3333445555554332211 12245667777766544  5787787775  89999999999999999875

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.97  E-value=1e-30  Score=214.38  Aligned_cols=167  Identities=28%  Similarity=0.434  Sum_probs=145.3

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++++.....    ...+.++|+|+|++.+++.+ +      .+..|||++++                   ..+
T Consensus       242 ~YG~tE~~~~~~~~~----~~~~~~~G~p~~~~~~~~~~-~------~~~~gel~v~~-------------------~~~  291 (414)
T PRK08308        242 QYGCSEAGCVSICPD----MKSHLDLGNPLPHVSVSAGS-D------ENAPEEIVVKM-------------------GDK  291 (414)
T ss_pred             ccCccccCCeeecCC----CCCCCccCccCCCeEEEEec-C------CCCCceEEEEc-------------------CCc
Confidence            599999986554221    23456899999999998865 2      35679999975                   468


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.++++||.+|++|++|++|+|.+||+.+.++++|.+++|++.+++..++.++++++...  ..+..
T Consensus       292 ~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--~~~~~  369 (414)
T PRK08308        292 EIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--EIDPV  369 (414)
T ss_pred             eEECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--CCCHH
Confidence            9999999999999999999999999999999999999999999999999999999988888888888887653  56678


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHH
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELI  199 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~  199 (206)
                      +++++++++++.++.|..+++++.||+|++||++|+.|+
T Consensus       370 ~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~~  408 (414)
T PRK08308        370 QLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLLE  408 (414)
T ss_pred             HHHHHHHHhCccccCCcEEEEeccCCCCCCcCeehhhhh
Confidence            999999999999999999999999999999999999544

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=99.97  E-value=1.3e-30  Score=216.92  Aligned_cols=201  Identities=31%  Similarity=0.462  Sum_probs=164.7

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      +||+|||++.++...+.+  ...+++|.|+|+.+++++|++..+-...+..|||+|+|+.++.||+++|+.|.+.+|.+|
T Consensus       450 GYGlTEts~g~~~~~~~d--~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDG  527 (691)
T KOG1256|consen  450 GYGLTETSAGTTLTLPGD--NVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDG  527 (691)
T ss_pred             cccccccCCceEeccCCC--CCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhcccc
Confidence            699999997666555533  378999999999999999988888888888999999999999999999999999999999


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEE-CCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKC-NGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK  159 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (206)
                      |++|||+|+|+++|.+.+.||..++||+ .|++|.|..||++....+.|.+.+|.+...   ...++++|++......+.
T Consensus       528 WLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~---~~~LvaiVvpd~e~~~~~  604 (691)
T KOG1256|consen  528 WLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSL---RSFLVAIVVPDPEVLKSW  604 (691)
T ss_pred             ccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcc---hhcEEEEEecChhhchhh
Confidence            9999999999999999999999999997 999999999999999999999999997543   356888888854321100


Q ss_pred             --------------------H----HHHHHH-HHhccccCceeEEEEe------CCcCCCCCCcccHHHHHHHHHccC
Q 043808          160 --------------------E----DVQKFV-VKQVARYKRLRNVTFT------NSIPKTTSGKILRRELIAKLRSKI  206 (206)
Q Consensus       160 --------------------~----~l~~~~-~~~l~~~~~p~~~~~v------~~~P~t~~GKv~r~~l~~~~~~~~  206 (206)
                                          +    ++.+.- .+.+..+.....+.+.      +.=-+||+-|+.|..+.+.|+++|
T Consensus       605 a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~I  682 (691)
T KOG1256|consen  605 AAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQI  682 (691)
T ss_pred             HHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHH
Confidence                                1    111111 2235667777777763      222358999999999999999875

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=5e-31  Score=226.32  Aligned_cols=192  Identities=27%  Similarity=0.391  Sum_probs=152.0

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      +||+||++++++....  .....+++|+|+|+++++++        +.|+.|||+++|++++.||+++++.+.+.|+.+|
T Consensus       383 ~YG~TE~~~~~~~~~~--~~~~~~svG~p~pg~~v~i~--------~~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dg  452 (624)
T PRK12582        383 GYGATETAPTTTGTHW--DTERVGLIGLPLPGVELKLA--------PVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEG  452 (624)
T ss_pred             ccccccccceeecccC--CCCCCCCCCcCCCCcEEEEc--------cCCCceEEEEECCcccccccCCccchhhhcCccC
Confidence            5999999877653222  12456789999999999985        4477899999999999999999999988887789


Q ss_pred             eEecCceEEE-e---cCCcEEEeccccceEEE-CCeEeChHHHH--HHHhcCCCcceeEEEeecCCCCCceeEEEEEeC-
Q 043808           81 WLHTGDLGYF-D---EHGQLFIVDRIKELIKC-NGFQVAPAELE--GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRS-  152 (206)
Q Consensus        81 ~~~TGDl~~~-~---~~g~l~~~GR~dd~i~~-~G~~v~~~~ie--~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~-  152 (206)
                      ||+|||++++ +   ++|.++|+||.+|+|++ +|++|++.+||  ..+.++|.|.+++|++.+++..+    ++|++. 
T Consensus       453 w~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~g----~lv~p~~  528 (624)
T PRK12582        453 FYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIG----LLAWPNP  528 (624)
T ss_pred             CccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCcEE----EEEecCH
Confidence            9999999998 4   46899999999999996 89999999885  67889999999999998766433    333321 


Q ss_pred             ---------CCC----CCCHHHHHHHHHHhccccC--------ceeEEEEeCCcCC------CCCCcccHHHHHHHHHcc
Q 043808          153 ---------PNS----SLTKEDVQKFVVKQVARYK--------RLRNVTFTNSIPK------TTSGKILRRELIAKLRSK  205 (206)
Q Consensus       153 ---------~~~----~~~~~~l~~~~~~~l~~~~--------~p~~~~~v~~~P~------t~~GKv~r~~l~~~~~~~  205 (206)
                               ++.    ..+.+++.+++...+..++        .|+.++++..+|+      |++||+.|+...+.|+++
T Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~  608 (624)
T PRK12582        529 AACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAAL  608 (624)
T ss_pred             HHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHH
Confidence                     110    0123567777776666666        9999999987764      677889999999999876


Q ss_pred             C
Q 043808          206 I  206 (206)
Q Consensus       206 ~  206 (206)
                      |
T Consensus       609 i  609 (624)
T PRK12582        609 V  609 (624)
T ss_pred             H
Confidence            5

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.97  E-value=6e-30  Score=214.43  Aligned_cols=189  Identities=33%  Similarity=0.587  Sum_probs=151.1

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      +||+|||++..++..+  ....++++|.|+|+++++|.|           .|||+|+||.+|.|||++|+.|++.|+.+|
T Consensus       383 GYGlTEts~~~~v~~~--~~~~~gtvG~p~p~~evKI~d-----------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DG  449 (613)
T COG1022         383 GYGLTETSAVVSVNPP--DRFVLGTVGKPLPGIEVKIAD-----------DGEILVRGPNVMKGYYKNPEATAEAFTEDG  449 (613)
T ss_pred             EecccccccceEEccc--cCcccCCcCCcCCCceEEEcc-----------CceEEEecchhcchhcCChHHHhhhccccC
Confidence            6999999999887765  356789999999999999988           499999999999999999999999998999


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEE-CCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCC---
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKC-NGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS---  156 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---  156 (206)
                      ||+|||+|+++++|.|++.||..++|++ +|++|.|..||+.+..+|.|.+++|++ .+.   ..+.+++++....-   
T Consensus       450 Wf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k---~~~~AlIvp~~~~l~~~  525 (613)
T COG1022         450 WFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDK---KFLVALIVPDFDALEKW  525 (613)
T ss_pred             CcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCC---cceEEEEeCCHHHHHHH
Confidence            9999999999999999999999999997 999999999999999999999999998 322   34777777653211   


Q ss_pred             ---------CCH------HHHHHHH----H---HhccccCceeEEEEe-CCcC-----CCCCCcccHHHHHHHHHccC
Q 043808          157 ---------LTK------EDVQKFV----V---KQVARYKRLRNVTFT-NSIP-----KTTSGKILRRELIAKLRSKI  206 (206)
Q Consensus       157 ---------~~~------~~l~~~~----~---~~l~~~~~p~~~~~v-~~~P-----~t~~GKv~r~~l~~~~~~~~  206 (206)
                               .+.      .++++.+    .   ..+..+..+..+... ..+.     .|++-|+.|..+.+.+++.|
T Consensus       526 a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i  603 (613)
T COG1022         526 AESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEI  603 (613)
T ss_pred             HHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHH
Confidence                     011      1222222    1   123344555555554 3333     58899999999999887754

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.94  E-value=3.9e-27  Score=189.95  Aligned_cols=201  Identities=31%  Similarity=0.499  Sum_probs=161.1

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCC--ceEEEEEcCCCCcccCCChhhccccccC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQ--VGELWVRGPILMPGYFNNEQATKLIIDK   78 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~--~Gel~i~~~~~~~~y~~~~~~~~~~~~~   78 (206)
                      |||.||+++..+.....  ....+.+|.|++-.+++++|-+.+.=.+.+.  .|||||+|+.++.||+++++.+++.|-.
T Consensus       433 GYGLTEtca~~tv~e~~--d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~  510 (678)
T KOG1180|consen  433 GYGLTETCAAATVLEPE--DFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTV  510 (678)
T ss_pred             cccccchhcccEecChh--hcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhcee
Confidence            79999998888776553  3456789999999999999987776665555  6999999999999999999999877744


Q ss_pred             -CC--eEecCceEEEecCCcEEEeccccceEEE-CCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC
Q 043808           79 -EG--WLHTGDLGYFDEHGQLFIVDRIKELIKC-NGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN  154 (206)
Q Consensus        79 -~~--~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  154 (206)
                       +|  ||+|||++++.+||+|.+..|..|.+|. +|+.|++..+|++++.+|.|.+.+|++....   ..++++|+++..
T Consensus       511 ~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~---s~~VaiVVPn~~  587 (678)
T KOG1180|consen  511 EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNK---SKPVAIVVPNQK  587 (678)
T ss_pred             cCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEeccccc---ceeEEEEcCCch
Confidence             55  9999999999999999999999999996 9999999999999999999999999975543   468888887632


Q ss_pred             CC--------C---CH------HHHHHHH---------HHhccccCceeEEEEeCC--cC----CCCCCcccHHHHHHHH
Q 043808          155 SS--------L---TK------EDVQKFV---------VKQVARYKRLRNVTFTNS--IP----KTTSGKILRRELIAKL  202 (206)
Q Consensus       155 ~~--------~---~~------~~l~~~~---------~~~l~~~~~p~~~~~v~~--~P----~t~~GKv~r~~l~~~~  202 (206)
                      ..        .   +.      .++.+.+         +++|..+.+|..|++.+.  =|    .|+.-|+.|+.+++.|
T Consensus       588 ~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~  667 (678)
T KOG1180|consen  588 HLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAY  667 (678)
T ss_pred             HHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHH
Confidence            11        0   00      1222221         456888999999888632  12    2556799999999998


Q ss_pred             HccC
Q 043808          203 RSKI  206 (206)
Q Consensus       203 ~~~~  206 (206)
                      ++.|
T Consensus       668 k~ei  671 (678)
T KOG1180|consen  668 KKEI  671 (678)
T ss_pred             HHHH
Confidence            8764

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.93  E-value=9.6e-25  Score=174.38  Aligned_cols=118  Identities=20%  Similarity=0.255  Sum_probs=109.6

Q ss_pred             CCCeEecCceEEE-ecCCcEEEeccccceEEECC---eEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCC
Q 043808           78 KEGWLHTGDLGYF-DEHGQLFIVDRIKELIKCNG---FQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP  153 (206)
Q Consensus        78 ~~~~~~TGDl~~~-~~~g~l~~~GR~dd~i~~~G---~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  153 (206)
                      .+|||+|||++++ |++|.++|.||.+     +|   ++|+|. ||+.+.++|+|.+|+|++.+++..++.+++||++..
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~  280 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL  280 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC
Confidence            5799999999998 6999999999998     78   799999 999999999999999999999999999999998763


Q ss_pred             CCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          154 NSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       154 ~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                        ..+.+++++++++.|+. +.|..++++++||+|++||++|+.|++++.+
T Consensus       281 --~~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~  328 (365)
T PRK09188        281 --PADEKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMN  328 (365)
T ss_pred             --CCCHHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhc
Confidence              45678999999999999 9999999999999999999999999988644

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.92  E-value=7.2e-24  Score=171.91  Aligned_cols=110  Identities=21%  Similarity=0.377  Sum_probs=97.2

Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCC-
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLT-  158 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-  158 (206)
                      .|++|||+++++++|.++|+||.||+|++.|++|+|.+||+.+.++|.|.+++|..     .++.+.++++..+..... 
T Consensus       275 ~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~~~  349 (386)
T TIGR02372       275 RRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADEAE  349 (386)
T ss_pred             ceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCChHH
Confidence            36899999999999999999999999999999999999999999999999998863     346788888876543322 


Q ss_pred             -HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCccc
Q 043808          159 -KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKIL  194 (206)
Q Consensus       159 -~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~  194 (206)
                       .++++++++++++.++.|..+.++++||+|++||++
T Consensus       350 ~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~  386 (386)
T TIGR02372       350 LEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA  386 (386)
T ss_pred             HHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence             458889999999999999999999999999999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.92  E-value=1.3e-24  Score=177.39  Aligned_cols=132  Identities=32%  Similarity=0.476  Sum_probs=112.7

Q ss_pred             CcccccCccceeccCCcc-CCC--CCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc
Q 043808            1 GYGMTETCGVVTVENPLL-GVQ--NSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~-~~~--~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~   77 (206)
                      .||+||+++++++..... ...  .+.++|.|++++.++|++++ ++.++.|+.|||++++++++.||++++..+...+.
T Consensus       266 ~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~  344 (408)
T TIGR01733       266 LYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDDD-LRPVPVGVVGELYIGGPGVARGYLNRPELTAERFV  344 (408)
T ss_pred             cccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECCC-CCCCCCCCceEEEecCccccccccCChhhhhccee
Confidence            599999998886432211 111  26789999999999999954 89999999999999999999999998887765542


Q ss_pred             C------CC--eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEE
Q 043808           78 K------EG--WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVV  133 (206)
Q Consensus        78 ~------~~--~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v  133 (206)
                      .      ++  ||+|||+++++++|++++.||.+|+++++|++++|.+||+.+..++.|.+++|
T Consensus       345 ~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       345 PDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             eCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence            2      22  99999999999999999999999999999999999999999999999998864

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.90  E-value=9.4e-23  Score=167.78  Aligned_cols=174  Identities=22%  Similarity=0.224  Sum_probs=120.5

Q ss_pred             CcccccCcc-ceeccCCccCCCCCCcceeec--CCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc
Q 043808            1 GYGMTETCG-VVTVENPLLGVQNSGSAGRLV--AGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID   77 (206)
Q Consensus         1 ~YG~TE~g~-~~~~~~~~~~~~~~~~~G~p~--~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~   77 (206)
                      .||+||+++ .+.....   ...   .|.++  +.+.++|+|++++++++.|+.|||++++.            +...+ 
T Consensus       226 ~YG~tE~~~~~~~~~~~---~~~---~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~------------~~~~~-  286 (422)
T TIGR02155       226 IYGLSEVIGPGVAMECV---ETQ---DGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTL------------TKEAL-  286 (422)
T ss_pred             cccchhhcCCceeeccc---ccC---CCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecC------------Ccccc-
Confidence            599999853 2222111   011   12233  35677899978899999999999999873            22223 


Q ss_pred             CCCeEecCceEEEecC-C-----cEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEe
Q 043808           78 KEGWLHTGDLGYFDEH-G-----QLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVR  151 (206)
Q Consensus        78 ~~~~~~TGDl~~~~~~-g-----~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  151 (206)
                      +.+||+|||+++++++ |     .+++.||.+|+|+++|.+|+|.+||..+.++|+|.....+........+.+.+.++.
T Consensus       287 p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~  366 (422)
T TIGR02155       287 PVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVEL  366 (422)
T ss_pred             ceeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEE
Confidence            5679999999999775 4     368999999999999999999999999999999985555555444445567777666


Q ss_pred             CCCCC-----CC----HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccH
Q 043808          152 SPNSS-----LT----KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILR  195 (206)
Q Consensus       152 ~~~~~-----~~----~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r  195 (206)
                      .+...     ..    .++|.+.+++.+..+.. -.++.+++||+|+ ||+.|
T Consensus       367 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~~~~~~lp~~~-GK~~~  417 (422)
T TIGR02155       367 KPESYTLRLHEQASLLAGEIQHTIKQEVGVSMD-VHLVEPGSLPRSE-GKARR  417 (422)
T ss_pred             ecCcccccchHHHHHHHHHHHHHHHhccCcEEE-EEEECCCCccCCC-CCceE
Confidence            53321     11    34566666666655422 1233347999987 99876

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.89  E-value=1.9e-23  Score=171.16  Aligned_cols=109  Identities=40%  Similarity=0.746  Sum_probs=96.7

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++.+++...........+++|+|+|+++++|+|++++++++.|+.|||+++||+++.||+++++.+...|..++
T Consensus       309 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~  388 (417)
T PF00501_consen  309 LYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDG  388 (417)
T ss_dssp             EEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTS
T ss_pred             cccccccceeeecccccccccccccccccccccccccccccccccccccccccccccCCccceeeecccccccccccccc
Confidence            49999999999755322233467889999999999999977799999999999999999999999999988888886668


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEEC
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCN  109 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~  109 (206)
                      ||+|||+++++++|.++++||.||+||++
T Consensus       389 ~~~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  389 WYRTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             EEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             ceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence            99999999999999999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=99.87  E-value=1.2e-21  Score=158.78  Aligned_cols=196  Identities=26%  Similarity=0.336  Sum_probs=155.8

Q ss_pred             CcccccCccceeccCCccCCCCCCcce------eecCCceEEEEeCCCCCC----------CCCCCceEEE--EEcCC--
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAG------RLVAGVEAQIVCVDTLKP----------LPPNQVGELW--VRGPI--   60 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G------~p~~~~~~~i~~~~~~~~----------~~~g~~Gel~--i~~~~--   60 (206)
                      .||+||...-......     ..+.+|      +-+--+++.-+|++++++          ++.|++|.|+  |..-.  
T Consensus       387 ~YgaTEgn~~~~N~d~-----~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~  461 (649)
T KOG1179|consen  387 FYGATEGNSNLVNYDG-----RVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPL  461 (649)
T ss_pred             EeccccCcceeeeecC-----ccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCch
Confidence            3999999766655432     223333      223334555566677764          5789999775  33333  


Q ss_pred             -CCcccCCChhhcccc-----c-cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEE
Q 043808           61 -LMPGYFNNEQATKLI-----I-DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVV  133 (206)
Q Consensus        61 -~~~~y~~~~~~~~~~-----~-~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v  133 (206)
                       .+.||.+....++..     | .++-||.|||+..+|+.|.+||..|+.|++...|++|+..|+|+++..+..++++.|
T Consensus       462 ~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~V  541 (649)
T KOG1179|consen  462 RSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNV  541 (649)
T ss_pred             hhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeE
Confidence             388999966655322     2 356799999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCC-CCCceeEEEEEeCCCCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHH
Q 043808          134 IPFPDP-EAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAK  201 (206)
Q Consensus       134 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~  201 (206)
                      +++.-+ ..|..=+|.++..+....+.+++-++++..||+|..|..+.+.+++++|.+.|..+..|.+.
T Consensus       542 YGV~VP~~EGRaGMAaI~~~p~~~~d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~e  610 (649)
T KOG1179|consen  542 YGVTVPGYEGRAGMAAIVLDPTTEKDLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQKE  610 (649)
T ss_pred             EEEecCCccCccceEEEEecCcccchHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHHHc
Confidence            999755 33445567777788888999999999999999999999999999999999999999998865

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.79  E-value=6.4e-19  Score=154.03  Aligned_cols=123  Identities=25%  Similarity=0.384  Sum_probs=114.1

Q ss_pred             CCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCC-
Q 043808           79 EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL-  157 (206)
Q Consensus        79 ~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-  157 (206)
                      +.+|+|||+++...+|.+.+.||.|++||.+|+++.+.+|+..+..+|.|.+++.....+..-++.+.+|++....... 
T Consensus       453 ~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~  532 (1032)
T KOG1178|consen  453 ARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSV  532 (1032)
T ss_pred             hhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCch
Confidence            5689999999998999999999999999999999999999999999999999999999988889999999998765443 


Q ss_pred             CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHH
Q 043808          158 TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAK  201 (206)
Q Consensus       158 ~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~  201 (206)
                      ....+++++.++|+.|++|..++.++++|+|++||||+++|...
T Consensus       533 ~~~~i~~~l~~~La~y~vPs~~V~l~~vPl~~~GKvDkkaL~~~  576 (1032)
T KOG1178|consen  533 LIRDIRNYLKKELASYMLPSLVVPLAKVPLNPNGKVDKKALLEY  576 (1032)
T ss_pred             hHHHHHHhhcccccceecceEEEEhhhCCcCCCCCcChhhhhhh
Confidence            35789999999999999999999999999999999999999983

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.71  E-value=3e-17  Score=141.66  Aligned_cols=125  Identities=29%  Similarity=0.340  Sum_probs=108.0

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||+....+............++|+|+++..+.++| +.++++|.|..|||++.|..+++||++++..+...|-...
T Consensus       518 ~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~  596 (642)
T COG1020         518 LYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALR  596 (642)
T ss_pred             ccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC-CCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhcc
Confidence            499999766665443322222256899999999999999 8999999999999999999999999999999987773335


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCC
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHP  126 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~  126 (206)
                      +|+|||++++.++|.+.++||.|+++|++|.++.+.+||..+.+++
T Consensus       597 ~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         597 LYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             CccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999998764

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.69  E-value=1.4e-15  Score=125.94  Aligned_cols=179  Identities=12%  Similarity=0.004  Sum_probs=107.1

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++..+ .+..     . .....+-+.+.++|+|++++.++|.|+.|||++++-+-.        .++..+ +--
T Consensus       235 ~YG~TE~~~~~-~c~~-----~-~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~--------~~r~~~-Pli  298 (445)
T TIGR03335       235 TYGSTEGTMCG-ECQA-----V-AGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKP--------GERCGS-LLI  298 (445)
T ss_pred             cCChhhhhheE-EecC-----C-CCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCC--------CccCCc-eEE
Confidence            59999986322 1111     1 112223345789999988888999999999999873210        000001 233


Q ss_pred             eEecCceEEEec-C----Cc----EEEeccccceEEECCeEeChHHHHHHHhcC---CCcceeEEEeecCC-CCCceeEE
Q 043808           81 WLHTGDLGYFDE-H----GQ----LFIVDRIKELIKCNGFQVAPAELEGVLVSH---PEILDAVVIPFPDP-EAGEVPIA  147 (206)
Q Consensus        81 ~~~TGDl~~~~~-~----g~----l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~---~~v~~~~v~~~~~~-~~~~~~~~  147 (206)
                      .|+|||++.+.. +    |+    +...||+||+++++|.+++|.+||++|.+.   +++....-+..... ...+.+.+
T Consensus       299 RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  378 (445)
T TIGR03335       299 NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGEEEGEITLRV  378 (445)
T ss_pred             EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecCCCCCceEEE
Confidence            599999998732 2    32    445799999999999999999999999994   55543332222222 22335666


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHh----ccc-------cCceeEEE--EeCCcCCCC-CCcccH
Q 043808          148 YVVRSPNSSLTKEDVQKFVVKQ----VAR-------YKRLRNVT--FTNSIPKTT-SGKILR  195 (206)
Q Consensus       148 ~v~~~~~~~~~~~~l~~~~~~~----l~~-------~~~p~~~~--~v~~~P~t~-~GKv~r  195 (206)
                      .++..+......+++.+.+.+.    ++.       ..+...+.  .-..+|+++ .||..|
T Consensus       379 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r  440 (445)
T TIGR03335       379 SLECEDKDNCSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR  440 (445)
T ss_pred             EEEecCcccchHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence            6665544333344444444443    221       11111222  238899983 688765

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.69  E-value=2.1e-15  Score=121.57  Aligned_cols=175  Identities=22%  Similarity=0.224  Sum_probs=117.7

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||..+.....+..   . . -..-+-+...+.++||++++.+++|+.|||++++-            ++..+ +--
T Consensus       241 iYGltE~~g~g~~eC~~---~-~-glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L------------~~~~~-PlI  302 (438)
T COG1541         241 IYGLTEGFGPGAGECTE---R-N-GLHIWEDHFIFEIVDPETGEQLPDGERGELVITTL------------TKEGM-PLI  302 (438)
T ss_pred             ccccccccCCccccccc---c-c-CCCcchhhceeeeecCCcCccCCCCCeeEEEEEec------------cccCc-ceE
Confidence            39999997664111110   0 0 12234567899999999999999999999999872            22222 344


Q ss_pred             eEecCceEEEecC----Cc-----EEEeccccceEEECCeEeChHHHHHHHhcCCCcc-eeEEEeecCCCCCceeEEEEE
Q 043808           81 WLHTGDLGYFDEH----GQ-----LFIVDRIKELIKCNGFQVAPAELEGVLVSHPEIL-DAVVIPFPDPEAGEVPIAYVV  150 (206)
Q Consensus        81 ~~~TGDl~~~~~~----g~-----l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~-~~~v~~~~~~~~~~~~~~~v~  150 (206)
                      .|+|||+..+.++    |+     ..+.||.||++.+.|.+|+|..||+.+.+.+.+. +..++... ....+.+.+-|+
T Consensus       303 RYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~L~V~vE  381 (438)
T COG1541         303 RYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDELTVRVE  381 (438)
T ss_pred             EEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCceEEEEEE
Confidence            6999999998663    32     4699999999999999999999999999999998 55555444 556677888887


Q ss_pred             eCCCCCCCH--HHHHHHHHHhccccCce--e-EEEEeCCcCCCCCCcccH
Q 043808          151 RSPNSSLTK--EDVQKFVVKQVARYKRL--R-NVTFTNSIPKTTSGKILR  195 (206)
Q Consensus       151 ~~~~~~~~~--~~l~~~~~~~l~~~~~p--~-~~~~v~~~P~t~~GKv~r  195 (206)
                      ..+......  .++.+.+.+.+......  . .++.+..+|+|. ||..|
T Consensus       382 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~v~~g~l~r~~-~K~kr  430 (438)
T COG1541         382 LENEAEELEDERRLAKKLIKNIKSELGVRVEVELVEPGELPRTE-GKAKR  430 (438)
T ss_pred             ecCcccchHHHHHHHHHHHHHHHhhcCCceEEEEEeccceeccc-CceeE
Confidence            765422221  22223444433322222  2 355558999984 56543

>PTZ00297 pantothenate kinase; Provisional

Probab=99.59  E-value=1.7e-14  Score=132.02  Aligned_cols=175  Identities=17%  Similarity=0.103  Sum_probs=121.2

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      +||.||+.   +.....    .....|.|+|+++++|.+.+....  .+..|||+++       |.++++.|.+.+  ++
T Consensus       784 g~glTE~~---~~~~~~----~~~~~G~PlpgvEvKI~~~~E~~~--~~~~GEIlvr-------~~kdpe~T~e~~--~g  845 (1452)
T PTZ00297        784 VPCLREVF---FLPSEG----VFCVDGTPAPSLQVDLEPFDEPSD--GAGIGQLVLA-------KKGEPRRTLPIA--AQ  845 (1452)
T ss_pred             ecceEEee---eecCCC----CcccCCeecCceEEEEcccccccC--CCCCCeEEEE-------ECCChHHHHHhh--Cc
Confidence            58899953   222211    122339999999999987322211  1235999995       347777776543  34


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEE-CCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCC---
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKC-NGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS---  156 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---  156 (206)
                      |         .+||.|.+.||..|+||. +|++|.|..||+.+.++|.|.+++|++...+    .++++|++....-   
T Consensus       846 W---------~~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k----~lvALVvpd~e~l~~~  912 (1452)
T PTZ00297        846 W---------KRDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR----PIIAIVSPNRDTVEFE  912 (1452)
T ss_pred             C---------ccCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC----ceEEEEEeCHHHHHHH
Confidence            4         479999999999999997 9999999999999999999999999986543    2788887652110   


Q ss_pred             ----------------CCHHH--------HHHHH---HH--hccccCceeEEEEe-CCc-----CCCCCCcccHHHHHHH
Q 043808          157 ----------------LTKED--------VQKFV---VK--QVARYKRLRNVTFT-NSI-----PKTTSGKILRRELIAK  201 (206)
Q Consensus       157 ----------------~~~~~--------l~~~~---~~--~l~~~~~p~~~~~v-~~~-----P~t~~GKv~r~~l~~~  201 (206)
                                      .+..+        +.+.+   .+  .+..+.+++.++++ +.|     -+||+.|+.|+.+.+.
T Consensus       913 wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~k  992 (1452)
T PTZ00297        913 WRQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSY  992 (1452)
T ss_pred             HHHHcCCCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHH
Confidence                            01122        22222   11  24556777766664 455     3699999999999999


Q ss_pred             HHccC
Q 043808          202 LRSKI  206 (206)
Q Consensus       202 ~~~~~  206 (206)
                      |++.|
T Consensus       993 Y~~~I  997 (1452)
T PTZ00297        993 FSSVI  997 (1452)
T ss_pred             HHHHH
Confidence            98865

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=99.51  E-value=6.3e-14  Score=87.21  Aligned_cols=70  Identities=31%  Similarity=0.544  Sum_probs=61.8

Q ss_pred             HHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHHhccccCce--eEEEEeCC-cCCCCCCc
Q 043808          117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRL--RNVTFTNS-IPKTTSGK  192 (206)
Q Consensus       117 ~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p--~~~~~v~~-~P~t~~GK  192 (206)
                      +||+.+.++++|.+++|++.+++..|+.+++++++      +.++|+++++++|++|+.|  ..++.+++ ||+|++||
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~GK   73 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPSGK   73 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETTSS
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhhhCCCcceeeEEEEccccCcCCCCCCCC
Confidence            69999999999999999999998888999999988      4489999999999999999  56666677 99999998

...

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.50  E-value=7.4e-13  Score=114.87  Aligned_cols=171  Identities=20%  Similarity=0.327  Sum_probs=126.5

Q ss_pred             eeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcc-cc---------ccCCCeEecCceEEEec----
Q 043808           27 GRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATK-LI---------IDKEGWLHTGDLGYFDE----   92 (206)
Q Consensus        27 G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~-~~---------~~~~~~~~TGDl~~~~~----   92 (206)
                      |...+++++.|++|++-.++.+|+.||+|+.|.+-+.+|+.-.+..+ ..         .++.+|-||||+|++..    
T Consensus      1156 G~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t 1235 (1363)
T KOG3628|consen 1156 GKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLT 1235 (1363)
T ss_pred             CcccccceeEEeCCccccccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecc
Confidence            77889999999999999999999999999999988887775322111 11         13456999999999732    


Q ss_pred             --CC----cEEEeccccceEEECCeEeChHHHHHHHhc-CCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHH
Q 043808           93 --HG----QLFIVDRIKELIKCNGFQVAPAELEGVLVS-HPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKF  165 (206)
Q Consensus        93 --~g----~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  165 (206)
                        ++    .+|++|-.++.+.++|.+.+|.+||+.+.. |+.|.+|++|-+..     .++++++... ++...+-+--.
T Consensus      1236 ~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~g-----lvVvviE~~g-q~~~~~LvPlI 1309 (1363)
T KOG3628|consen 1236 DANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQATG-----LVVVVIECHG-QQELADLVPLI 1309 (1363)
T ss_pred             cccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeCC-----eEEEEEEecC-chhHhhhhHHH
Confidence              22    489999999999999999999999998886 69999999996544     3555554443 23222223333


Q ss_pred             HHHhccccCce-eEEEEe--CCcCCCCCCcccHHHHHHHHH
Q 043808          166 VVKQVARYKRL-RNVTFT--NSIPKTTSGKILRRELIAKLR  203 (206)
Q Consensus       166 ~~~~l~~~~~p-~~~~~v--~~~P~t~~GKv~r~~l~~~~~  203 (206)
                      +...|..+.+. ..+.+|  +.+|+++.|.-+|..+++.+-
T Consensus      1310 v~~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~ 1350 (1363)
T KOG3628|consen 1310 VNVVLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWL 1350 (1363)
T ss_pred             HHHHHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHH
Confidence            44556655555 444444  779999999999998887653

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.06  E-value=2.2e-09  Score=93.85  Aligned_cols=174  Identities=17%  Similarity=0.277  Sum_probs=118.8

Q ss_pred             cceeecCC-ceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc------------cCCCeEecCceEEEe
Q 043808           25 SAGRLVAG-VEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII------------DKEGWLHTGDLGYFD   91 (206)
Q Consensus        25 ~~G~p~~~-~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~------------~~~~~~~TGDl~~~~   91 (206)
                      .+|...|+ +.+.++++++.++|..+++|||||.++++...|+..+..+...|            ....|.|||=+|+.+
T Consensus       503 d~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~  582 (1363)
T KOG3628|consen  503 DVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH  582 (1363)
T ss_pred             ccceecccceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee
Confidence            34545544 77788888999999999999999999999999998766665444            112478999999996


Q ss_pred             cCCcEEEeccccceEEECCeEeChHHH----------HHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC-CCCCHH
Q 043808           92 EHGQLFIVDRIKELIKCNGFQVAPAEL----------EGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN-SSLTKE  160 (206)
Q Consensus        92 ~~g~l~~~GR~dd~i~~~G~~v~~~~i----------e~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~~~~~  160 (206)
                      +++-+++.++.|......|...+..+|          +.+++..+.|-++.+|-      .+.++++++..+. .+.+.-
T Consensus       583 ~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~------~E~~~Vv~~esP~a~e~~~~  656 (1363)
T KOG3628|consen  583 NGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE------DEHIVVVVLESPDATEENSF  656 (1363)
T ss_pred             CCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee------cceEEEEEEeCcchhhhhhh
Confidence            655444444555555568887766554          44555567777777773      2334444433332 233344


Q ss_pred             HHHHHHHHhccccCceeE----EEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          161 DVQKFVVKQVARYKRLRN----VTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~----~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ++...+.+.+....+...    ++..+.+|||+-|-+.-...++.|.+
T Consensus       657 q~~~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~~  704 (1363)
T KOG3628|consen  657 QWMSRVFQALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFLE  704 (1363)
T ss_pred             hHHHHHHHHHHHHhcccceEEEEeccccCCCccccccccHHHHHHHHc
Confidence            566666666666555553    44449999999988999999988865

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=98.40  E-value=6.2e-06  Score=68.11  Aligned_cols=56  Identities=21%  Similarity=0.288  Sum_probs=41.4

Q ss_pred             CCeEecCceEEEecC----Cc----E-EEeccccceEEE---CCeE--eChHHHHHHHh-cCCCcceeEEE
Q 043808           79 EGWLHTGDLGYFDEH----GQ----L-FIVDRIKELIKC---NGFQ--VAPAELEGVLV-SHPEILDAVVI  134 (206)
Q Consensus        79 ~~~~~TGDl~~~~~~----g~----l-~~~GR~dd~i~~---~G~~--v~~~~ie~~i~-~~~~v~~~~v~  134 (206)
                      --.|+|||++.+.++    |+    + .+.||.+|++++   +|..  +.|..++..+. ..+++.+..++
T Consensus       294 lIRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~  364 (430)
T TIGR02304       294 IVRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVL  364 (430)
T ss_pred             EEeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEE
Confidence            345999999887543    32    3 389999999985   5544  59999988855 46888887766

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=98.30  E-value=2.4e-06  Score=55.78  Aligned_cols=85  Identities=21%  Similarity=0.273  Sum_probs=50.0

Q ss_pred             CeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCC---CHHHHHHHHHHhccccC--cee-EEEEeC
Q 043808          110 GFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL---TKEDVQKFVVKQVARYK--RLR-NVTFTN  183 (206)
Q Consensus       110 G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~--~p~-~~~~v~  183 (206)
                      |.+|+|..||+++.++|++.....+........+.+.+.|+..+....   ...+|.+.+.+.+....  .|. .++..+
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~~~V~lv~~g   80 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVRPEVELVPPG   80 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS-EEEEEE-TT
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCceEEEEEECCC
Confidence            789999999999999999995555545544567788888888775432   23344444444433221  232 234448


Q ss_pred             CcCCCCCCcccH
Q 043808          184 SIPKTTSGKILR  195 (206)
Q Consensus       184 ~~P~t~~GKv~r  195 (206)
                      +||++ .||..|
T Consensus        81 tLpr~-~~K~~R   91 (96)
T PF14535_consen   81 TLPRS-EGKAKR   91 (96)
T ss_dssp             -S----SSSS-S
T ss_pred             CccCC-CCcceE
Confidence            89997 688765

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.06  E-value=4.9e-05  Score=64.65  Aligned_cols=145  Identities=16%  Similarity=0.185  Sum_probs=83.3

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCC-ceEEEEeCCCCC-------------CCCCCCceEEEEEcCCCCcccC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAG-VEAQIVCVDTLK-------------PLPPNQVGELWVRGPILMPGYF   66 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~-~~~~i~~~~~~~-------------~~~~g~~Gel~i~~~~~~~~y~   66 (206)
                      +|++||+  ++++...   ..  ...+...++ ...+.++.++..             .+..|+..||+|++.   .|.|
T Consensus       300 ~y~ASEg--~i~i~~~---~~--~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~l~~~ele~G~~YelviTt~---~GLy  369 (528)
T PF03321_consen  300 GYGASEG--FIGIPLD---PE--DPGYVLAPDSGFFEFIPVDEDEQNPSEQPKTLLLHELEVGEEYELVITTN---SGLY  369 (528)
T ss_dssp             EEEETTE--EEEEES----CC--C--EEE-TTSSEEEEEE-STT-------SSSEEGGG--TT-EEEEEEEST---TS-S
T ss_pred             cccccce--EEEEecC---CC--CCceEeecCCeEEEEEeccCCcccccCCCceecHHHhcCCCeEEEEEecc---ccee
Confidence            5899996  2322221   11  122333333 366777654322             346788999999873   1222


Q ss_pred             CChhhccccccCCCeEecCceEEEec--CC--cEEEeccccceEEECCeEeChHHHHHHHhcC-----CCcceeEEEeec
Q 043808           67 NNEQATKLIIDKEGWLHTGDLGYFDE--HG--QLFIVDRIKELIKCNGFQVAPAELEGVLVSH-----PEILDAVVIPFP  137 (206)
Q Consensus        67 ~~~~~~~~~~~~~~~~~TGDl~~~~~--~g--~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~-----~~v~~~~v~~~~  137 (206)
                                    .|+.||+++...  ++  .+.|+||.+.++.+.|++++-.++.+++.+.     -.+.+..+....
T Consensus       370 --------------RY~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~  435 (528)
T PF03321_consen  370 --------------RYRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDP  435 (528)
T ss_dssp             --------------SEEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE-
T ss_pred             --------------eeecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeec
Confidence                          389999999843  45  7999999999999999999999999999886     225566665443


Q ss_pred             CCCCCceeEEEEEeCCCCCCCHHHHHHHHHHhc
Q 043808          138 DPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQV  170 (206)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l  170 (206)
                      .......-+.++++... ..+.+.+.+.+.+.|
T Consensus       436 ~~~~~~~Y~~~~e~~~~-~~~~~~~~~~lD~~L  467 (528)
T PF03321_consen  436 SSGNPPHYVLFWELEGE-PDDLEELAKALDESL  467 (528)
T ss_dssp             -SSSSBEEEEEEEECS--HHHHHHHHHHHHHCS
T ss_pred             ccCCCCceEEEEEeCCC-chHHHHHHHHHHHHh
Confidence            23344556677776654 223445555554444

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.60  E-value=0.0062  Score=52.54  Aligned_cols=60  Identities=17%  Similarity=0.175  Sum_probs=50.0

Q ss_pred             CCCCCceEEEEEcCCCCcccCCChhhccccccCCC--eEecCceEEEec----CCcEEEeccccceEEECCeEeChHHHH
Q 043808           46 LPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG--WLHTGDLGYFDE----HGQLFIVDRIKELIKCNGFQVAPAELE  119 (206)
Q Consensus        46 ~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~--~~~TGDl~~~~~----~g~l~~~GR~dd~i~~~G~~v~~~~ie  119 (206)
                      +..|...+|+|++                   ..|  .|+.||.++...    .-++.|+||.+.++.+.|+++.-.+++
T Consensus       391 Ve~G~~Y~lVvTT-------------------~~GLyRY~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~  451 (597)
T PLN02249        391 VEVGKEYELVITT-------------------YAGLYRYRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQ  451 (597)
T ss_pred             cCCCCeEEEEEEc-------------------ccceeEeecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHH
Confidence            3568889999987                   334  288999999843    346899999999999999999999999


Q ss_pred             HHHhc
Q 043808          120 GVLVS  124 (206)
Q Consensus       120 ~~i~~  124 (206)
                      .++.+
T Consensus       452 ~Av~~  456 (597)
T PLN02249        452 KAVEN  456 (597)
T ss_pred             HHHHH
Confidence            98887

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.28  E-value=0.0032  Score=54.12  Aligned_cols=61  Identities=16%  Similarity=0.146  Sum_probs=49.6

Q ss_pred             CCCCCceEEEEEcCCCCcccCCChhhccccccCCC--eEecCceEEEe----cCCcEEEeccccceEEECCeEeChHHHH
Q 043808           46 LPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG--WLHTGDLGYFD----EHGQLFIVDRIKELIKCNGFQVAPAELE  119 (206)
Q Consensus        46 ~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~--~~~TGDl~~~~----~~g~l~~~GR~dd~i~~~G~~v~~~~ie  119 (206)
                      +..|..-||+|++                   ..|  .|+.||+++..    ..-.+.|++|.+.+..+.|+|.+-.++.
T Consensus       398 vk~G~~YelVvTt-------------------~~GLYRYrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~  458 (606)
T PLN02247        398 VKVGHYYELVVTT-------------------FTGLYRYRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLL  458 (606)
T ss_pred             ccCCCeEEEEEEe-------------------cCceEEEecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHH
Confidence            3568888999876                   344  37899999873    3457999999999999999999999998


Q ss_pred             HHHhcC
Q 043808          120 GVLVSH  125 (206)
Q Consensus       120 ~~i~~~  125 (206)
                      .++.+.
T Consensus       459 ~Av~~a  464 (606)
T PLN02247        459 KAVTQA  464 (606)
T ss_pred             HHHHHH
Confidence            888774

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=97.22  E-value=0.002  Score=52.31  Aligned_cols=87  Identities=25%  Similarity=0.274  Sum_probs=56.2

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||..........   .+.      +.|.. +.+.|+++..++|.|+.|-|-+-++... .             ..+
T Consensus       263 ~ygmtEl~s~~~~~~~---~~~------~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl~~~-s-------------~p~  318 (365)
T PF04443_consen  263 MYGMTELNSQAYECGH---GHF------HVPPW-VIIRDPETLEPLPPGETGLIQVIDLANT-S-------------YPG  318 (365)
T ss_pred             eeeccccchhheeCCC---Ccc------cCCCe-EEEECCCCCcCCCCCCeeEEEEEccccc-C-------------CCc
Confidence            4999998765433311   111      12222 5666999999999999999988765321 0             233


Q ss_pred             eEecCceEEEecC--------CcEEEeccccceEEECCeE
Q 043808           81 WLHTGDLGYFDEH--------GQLFIVDRIKELIKCNGFQ  112 (206)
Q Consensus        81 ~~~TGDl~~~~~~--------g~l~~~GR~dd~i~~~G~~  112 (206)
                      .+.|.|+|.+..+        ..+.++||.+. -.++|..
T Consensus       319 ~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~-ae~RGCs  357 (365)
T PF04443_consen  319 FILTEDLGVLHGDDDCGCRKGKYFEVLGRADG-AEIRGCS  357 (365)
T ss_pred             EEEEcceeeecCCCCCCCccCCEEEEEeCCCC-CccCCcH
Confidence            4789999988654        26889999873 3344443

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.20  E-value=0.023  Score=48.95  Aligned_cols=61  Identities=18%  Similarity=0.160  Sum_probs=49.5

Q ss_pred             CCCCCceEEEEEcCCCCcccCCChhhccccccCCC--eEecCceEEEe----cCCcEEEeccccceEEECCeEeChHHHH
Q 043808           46 LPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG--WLHTGDLGYFD----EHGQLFIVDRIKELIKCNGFQVAPAELE  119 (206)
Q Consensus        46 ~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~--~~~TGDl~~~~----~~g~l~~~GR~dd~i~~~G~~v~~~~ie  119 (206)
                      +..|...||+|++                   ..|  .|+.||+++..    ..-.+.|++|.+-+..+.|+|.+-.++.
T Consensus       404 v~~G~~YelvvTt-------------------~~GLyRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~  464 (612)
T PLN02620        404 VKLGQEYELVVTT-------------------YAGLYRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQ  464 (612)
T ss_pred             ccCCCeEEEEEEe-------------------cCceEEEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHH
Confidence            4568888999986                   334  37899999873    3457999999999999999999999988


Q ss_pred             HHHhcC
Q 043808          120 GVLVSH  125 (206)
Q Consensus       120 ~~i~~~  125 (206)
                      .++.+.
T Consensus       465 ~Av~~a  470 (612)
T PLN02620        465 NAVKNA  470 (612)
T ss_pred             HHHHHH
Confidence            877764

>PF00818 Ice_nucleation: Ice nucleation protein repeat; InterPro: IPR000258 Certain Gram-negative bacteria express proteins that enable them to promote nucleation of ice at relatively high temperatures (above -5C) [, ]

Probab=87.38  E-value=0.29  Score=20.31  Aligned_cols=10  Identities=60%  Similarity=1.049  Sum_probs=7.8

Q ss_pred             CcccccCccc
Q 043808            1 GYGMTETCGV   10 (206)
Q Consensus         1 ~YG~TE~g~~   10 (206)
                      +||+|++..-
T Consensus         1 GYGSTqTA~~   10 (16)
T PF00818_consen    1 GYGSTQTAGE   10 (16)
T ss_pred             CCCcccccCC
Confidence            6999998653

These proteins are localised at the outer membrane surface and can cause frost damage to many plants. The primary structure of the proteins contains a highly repetitive domain that dominates the sequence. The domain comprises a number of 48-residue repeats, which themselves contain 3 blocks of 16 residues, the first 8 of which are identical. It is thought that the repetitive domain may be responsible for aligning water molecules in the seed crystal. [.........48.residues.repeated.domain..........] / / | | \ \ AGYGSTxTagxxssli AGYGSTxTagxxsxlt AGYGSTxTaqxxsxlt [16.residues...] [16.residues...] [16.residues...] ; GO: 0009279 cell outer membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	206
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		2e-49
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		4e-49
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-49
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-49
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		8e-48
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		2e-47
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		2e-47
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		2e-47
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		2e-47
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		9e-47
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		4e-34
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		8e-34
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		8e-27
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		5e-25
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		2e-23
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		2e-23
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		8e-21
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		1e-20
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		1e-20
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		1e-20
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		8e-20
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		1e-19
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		3e-19
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		9e-17
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		3e-16
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		3e-15
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		3e-15
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		9e-15
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		3e-13
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		3e-13
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		3e-13
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		3e-13
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		4e-13
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		7e-13
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		7e-13
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		7e-13
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		7e-13
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		7e-13
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		8e-13
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		9e-13
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		1e-12
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		3e-12
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		3e-11
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		6e-11
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		7e-11
3fcc_A	512	Crystal Structure Of Dlta Protein In Complex With A		7e-10
3dhv_A	512	Crystal Structure Of Dlta Protein In Complex With D		8e-10
3e7w_A	511	Crystal Structure Of Dlta: Implications For The Rea		6e-09
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		6e-09
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		7e-09
4dg8_A	620	Structure Of Pa1221, An Nrps Protein Containing Ade		6e-07
3l8c_A	521	Structure Of Probable D-Alanine--Poly(Phosphoribito		3e-06
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		1e-05

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 109/208 (52%), Positives = 139/208 (66%), Gaps = 9/208 (4%)
Query: 1   GYGMTETCGVVTVENPLLGVQN------SGSAGRLVAGVEAQIVCVDTLKPLPPNQVGEL 54
           GYGMTE   V+ +    LG         SG+ G +V   E +IV  DT   L  NQ GE+
Sbjct: 376 GYGMTEAGPVLAMS---LGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEI 432
Query: 55  WVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVA 114
            +RG  +M GY NN  AT   IDK+GWLHTGD+G  D+  +LFIVDR+KELIK  GFQVA
Sbjct: 433 CIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVA 492
Query: 115 PAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYK 174
           PAELE +L+ HP+I D  V+   +  AGEVP+A+VV+S +S L+++DV++FV KQV  YK
Sbjct: 493 PAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYK 552
Query: 175 RLRNVTFTNSIPKTTSGKILRRELIAKL 202
           R+  V FT SIPK  SGKILR++L AKL
Sbjct: 553 RINKVFFTESIPKAPSGKILRKDLRAKL 580

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score =  190 bits (483), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 133/199 (66%), Gaps = 3/199 (1%)
Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET   + +     G    G++G++V   +A+++ +DT K L PN+ GE+ V+GP+
Sbjct: 341 GYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPM 398
Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           LM GY NN +ATK +ID+EGWLHTGD+GY+DE    FIVDR+K LIK  G+QV PAELE 
Sbjct: 399 LMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELES 458
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR-NV 179
           VL+ HP I DA V   PDP AGE+P A VV     ++T+++V  +V  QV+  KRLR  V
Sbjct: 459 VLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGV 518
Query: 180 TFTNSIPKTTSGKILRREL 198
            F + +PK  +GKI  R +
Sbjct: 519 RFVDEVPKGLTGKIDGRAI 537

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  190 bits (482), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 133/199 (66%), Gaps = 3/199 (1%)
Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET   + +     G    G++G++V   +A+++ +DT K L PN+ GE+ V+GP+
Sbjct: 341 GYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPM 398
Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           LM GY NN +ATK +ID+EGWLHTGD+GY+DE    FIVDR+K LIK  G+QV PAELE 
Sbjct: 399 LMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELES 458
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR-NV 179
           VL+ HP I DA V   PDP AGE+P A VV     ++T+++V  +V  QV+  KRLR  V
Sbjct: 459 VLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGV 518
Query: 180 TFTNSIPKTTSGKILRREL 198
            F + +PK  +GKI  R +
Sbjct: 519 RFVDEVPKGLTGKIDGRAI 537

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  190 bits (482), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 133/199 (66%), Gaps = 3/199 (1%)
Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET   + +     G    G++G++V   +A+++ +DT K L PN+ GE+ V+GP+
Sbjct: 341 GYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPM 398
Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           LM GY NN +ATK +ID+EGWLHTGD+GY+DE    FIVDR+K LIK  G+QV PAELE 
Sbjct: 399 LMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELES 458
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR-NV 179
           VL+ HP I DA V   PDP AGE+P A VV     ++T+++V  +V  QV+  KRLR  V
Sbjct: 459 VLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGV 518
Query: 180 TFTNSIPKTTSGKILRREL 198
            F + +PK  +GKI  R +
Sbjct: 519 RFVDEVPKGLTGKIDGRAI 537

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  186 bits (472), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 95/199 (47%), Positives = 130/199 (65%), Gaps = 2/199 (1%)
Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET   + +  P       G+ G++V    A+IV +DT K L  NQ GEL V+GP+
Sbjct: 373 GYGLTETTSAIII-TPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPM 431
Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY NN +AT  +IDK+GWLH+GD+ Y+D+ G  FIVDR+K LIK  G+QV PAELE 
Sbjct: 432 IMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELES 491
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR-NV 179
           +L+ HP I DA V   PDP+AGE+P A VV     ++T+++V  +V  QV   KRLR  V
Sbjct: 492 ILLQHPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQVTASKRLRGGV 551
Query: 180 TFTNSIPKTTSGKILRREL 198
            F + +PK  +GKI  R++
Sbjct: 552 KFVDEVPKGLTGKIDARKI 570

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 130/199 (65%), Gaps = 3/199 (1%)
Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET   + +     G    G+ G++V   EA++V +DT K L  NQ GEL VRGP+
Sbjct: 339 GYGLTETTSAILITPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPM 396
Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY NN +AT  +IDK+GWLH+GD+ Y+DE    FIVDR+K LIK  G+QVAPAELE 
Sbjct: 397 IMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELES 456
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR-NV 179
           +L+ HP I DA V   PD +AGE+P A VV     ++T++++  +V  QV   K+LR  V
Sbjct: 457 ILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGV 516
Query: 180 TFTNSIPKTTSGKILRREL 198
            F + +PK  +GK+  R++
Sbjct: 517 VFVDEVPKGLTGKLDARKI 535

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 130/199 (65%), Gaps = 3/199 (1%)
Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET   + +     G    G+ G++V   EA++V +DT K L  NQ GEL VRGP+
Sbjct: 339 GYGLTETTSAILITPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPM 396
Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY NN +AT  +IDK+GWLH+GD+ Y+DE    FIVDR+K LIK  G+QVAPAELE 
Sbjct: 397 IMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELES 456
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR-NV 179
           +L+ HP I DA V   PD +AGE+P A VV     ++T++++  +V  QV   K+LR  V
Sbjct: 457 ILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGV 516
Query: 180 TFTNSIPKTTSGKILRREL 198
            F + +PK  +GK+  R++
Sbjct: 517 VFVDEVPKGLTGKLDARKI 535

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 104/207 (50%), Positives = 140/207 (67%), Gaps = 7/207 (3%)
Query: 1   GYGMTETCGVVTV-----ENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELW 55
           GYGMTE   V+ +     + P       G+ G +V   E +IV  +T   LP NQ GE+ 
Sbjct: 329 GYGMTEAGPVLAMCLAFAKEPF--DIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEIC 386
Query: 56  VRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAP 115
           +RG  +M GY N+ +AT   IDKEGWLHTGD+GY D+  +LFIVDR+KELIK  GFQVAP
Sbjct: 387 IRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAP 446
Query: 116 AELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKR 175
           AELE +L++HPEI DA V+   D +AGEVP+A+VV+S  S  T++++++++ KQV  YKR
Sbjct: 447 AELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKR 506
Query: 176 LRNVTFTNSIPKTTSGKILRRELIAKL 202
           ++ V F  +IPK  SGKILR+ L  KL
Sbjct: 507 IKRVFFIEAIPKAPSGKILRKNLKEKL 533

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 130/199 (65%), Gaps = 3/199 (1%)
Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET   + +     G    G+ G++V   EA++V +DT K L  NQ GEL VRGP+
Sbjct: 344 GYGLTETTSAILITPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPM 401
Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY NN +AT  +IDK+GWLH+GD+ Y+DE    FIVDR+K LIK  G+QVAPAELE 
Sbjct: 402 IMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELES 461
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR-NV 179
           +L+ HP I DA V   PD +AGE+P A VV     ++T++++  +V  QV   K+LR  V
Sbjct: 462 ILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGV 521
Query: 180 TFTNSIPKTTSGKILRREL 198
            F + +PK  +GK+  R++
Sbjct: 522 VFVDEVPKGLTGKLDARKI 540

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  182 bits (463), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 129/199 (64%), Gaps = 3/199 (1%)
Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET   + +     G    G+ G++V   EA++V +DT K L  NQ GEL VRGP+
Sbjct: 344 GYGLTETTSAILITPK--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPM 401
Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY NN +AT  +IDK+GWLH+GD+ Y+DE    FIVDR+K LIK  G QVAPAELE 
Sbjct: 402 IMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELES 461
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR-NV 179
           +L+ HP I DA V   PD +AGE+P A VV     ++T++++  +V  QV   K+LR  V
Sbjct: 462 ILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGV 521
Query: 180 TFTNSIPKTTSGKILRREL 198
            F + +PK  +GK+  R++
Sbjct: 522 VFVDEVPKGLTGKLDARKI 540

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score =  140 bits (353), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 78/206 (37%), Positives = 122/206 (59%), Gaps = 7/206 (3%)
Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           +G TE C  VT  NP L +  S + G   + +E +++ ++  + L   + GE+ +RGP +
Sbjct: 335 WGXTEACPXVTT-NPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNI 393
Query: 62  MPGYFNNEQATK--LIIDKEG--WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAE 117
             GY+  E+  +     D++G  +  TGD+G+ DE G L   DR+KE+IK  G+ +AP E
Sbjct: 394 FKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFE 453
Query: 118 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN--SSLTKEDVQKFVVKQVARYKR 175
           LE +L  H  + D  VI  PD EAGEVP A++V  P     + +ED+ ++V ++++ YKR
Sbjct: 454 LEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKR 513
Query: 176 LRNVTFTNSIPKTTSGKILRRELIAK 201
           +R V F   +P+T SGK+LRR L  K
Sbjct: 514 VREVEFVEELPRTASGKLLRRLLREK 539

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score =  139 bits (351), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/196 (41%), Positives = 109/196 (55%), Gaps = 7/196 (3%)
Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           +G +ET G+ T   P        SAGR +      +V  +  +PLPP +VGE+ +RGP +
Sbjct: 302 FGQSETSGLSTFA-PYR--DRPKSAGRPLFWRTVAVVDAED-RPLPPGEVGEIVLRGPTV 357
Query: 62  MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRI--KELIKCNGFQVAPAELE 119
             GY+NN  AT+    + GW HTGD+G FD  G LF   R   KELIK  G  V PAE+E
Sbjct: 358 FKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVE 416
Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNV 179
           G L  HP I DAVVI  PDP+  E   A  V  P  S+  + + +FV   +ARYK+ ++V
Sbjct: 417 GALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHV 476
Query: 180 TFTNSIPKTTSGKILR 195
            F  ++PK   G I R
Sbjct: 477 VFVEALPKDAKGAIDR 492

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score =  116 bits (291), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 112/198 (56%), Gaps = 4/198 (2%)
Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GY +TE+CG  T+      ++ +GSAGR     +  +   D +  +  +  GE+ ++  I
Sbjct: 314 GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV--IREHGEGEVVIKSDI 371
Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           L+  Y+N  +AT+   D  GW  TGD+G  D+ G L+I DR+K++I   G  V PAE+E 
Sbjct: 372 LLKEYWNRPEATRDAFDN-GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIES 430
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           V++  P + +  VI  PD + GE+  A VV   N  ++++ + ++   ++ARYK  + V 
Sbjct: 431 VIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQN-EVSEQQIVEYCGTRLARYKLPKKVI 489
Query: 181 FTNSIPKTTSGKILRREL 198
           F  +IP+  +GKIL+  L
Sbjct: 490 FAEAIPRNPTGKILKTVL 507

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 105/197 (53%), Gaps = 2/197 (1%)
Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           YG TET       NP  G +  G+ G  + GV A++   +T K LP   +G + V+GP +
Sbjct: 300 YGXTETN--XNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNV 357
Query: 62  MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGV 121
             GY+   + TK     +G+  TGDLG  DE G + I+ R K+L+   GF V P E+E  
Sbjct: 358 FKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESE 417
Query: 122 LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTF 181
           + + P ++++ VI  P  + GE   A VVR   +++ +  V   +  Q+A++K  + V F
Sbjct: 418 IDAXPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKXPKKVIF 477
Query: 182 TNSIPKTTSGKILRREL 198
            + +P+ T GK+ +  L
Sbjct: 478 VDDLPRNTXGKVQKNVL 494

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 107/201 (53%), Gaps = 6/201 (2%)
Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVD--TLKPLPPNQVGELWVRGP 59
           YGMTET    +V     G   +G+ G  + GVE ++V  D   +  L    VGE+ VRGP
Sbjct: 304 YGMTETLMNTSVRAD--GEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGP 361
Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDR-IKELIKCNGFQVAPAEL 118
            L   Y N   AT     ++G+  TGD+   D  G + IV R   +LIK  G+++   E+
Sbjct: 362 NLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEI 421
Query: 119 EGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK-EDVQKFVVKQVARYKRLR 177
           E  L+ HPE+ +A V   PDP+ GE  +A++V +  ++      +   V  ++A +KR R
Sbjct: 422 ENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPR 481
Query: 178 NVTFTNSIPKTTSGKILRREL 198
            V + +++P+   GKI++R L
Sbjct: 482 VVRYLDAVPRNDMGKIMKRAL 502

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 109/208 (52%), Gaps = 10/208 (4%)
Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQI--------VCVDTLKPLPPN--Q 50
           GYG+TET  VV        +++     +L    +  +        V  +  +P+P +   
Sbjct: 323 GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKA 382
Query: 51  VGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNG 110
           +GE+ ++GP +  GY+ NE+AT+  +  +G+  TGD+  +DE G + I DR+K+LIK  G
Sbjct: 383 LGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGG 442
Query: 111 FQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQV 170
             ++  +LE  L+ HP++ +A V+  P P+  E P+A VV        +E  +  +    
Sbjct: 443 EWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGF 502
Query: 171 ARYKRLRNVTFTNSIPKTTSGKILRREL 198
           A+++      F   IP+T++GK L+R L
Sbjct: 503 AKWQLPDAYVFAEEIPRTSAGKFLKRAL 530

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 97/192 (50%), Gaps = 2/192 (1%)
Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           YGMTET   +   NP  G +  G+ G  + GV A++   +T   LP   +G + V GP +
Sbjct: 300 YGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNV 357
Query: 62  MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGV 121
             GY+   + T      +G+  TGDLG  DE G + I+ R  +L+   GF V P E+E  
Sbjct: 358 FXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESE 417
Query: 122 LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTF 181
           + + P ++++ VI  P  + GE   A VVR   +++ +  V   +  Q+A +     V F
Sbjct: 418 IDAMPGVVESAVIGVPHADFGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXFXMPXXVIF 477
Query: 182 TNSIPKTTSGKI 193
            + +P+ T G +
Sbjct: 478 VDDLPRNTMGAV 489

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 98/195 (50%), Gaps = 5/195 (2%)
Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           YGMTET   +   NP  G +  G+ G  + GV A++   +T   LP   +G + V GP +
Sbjct: 300 YGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNV 357
Query: 62  MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGV 121
             GY+   + T      +G+  TGDLG  DE G + I+ R  +L+   GF V P E+E  
Sbjct: 358 FXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESE 417
Query: 122 LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN---SSLTKEDVQKFVVKQVARYKRLRN 178
           + + P ++++ VI  P  + GE   A+VV       S +  E++  FV  ++A +     
Sbjct: 418 IDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRLAXFXMPXX 477
Query: 179 VTFTNSIPKTTSGKI 193
           V F + +P+ T G +
Sbjct: 478 VIFVDDLPRNTMGAV 492

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 110/215 (51%), Gaps = 20/215 (9%)
Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR-GPI 60
           YG TET G+  + +  + ++  G  G   +  + QI+  D    LPP   G++ +R  PI
Sbjct: 354 YGQTET-GLTCMVSKTMKIK-PGYMGTAASCYDVQII-DDKGNVLPPGTEGDIGIRVKPI 410
Query: 61  ----LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
               +  GY +N   T   I  + WL  GD G  DE G    + R  ++I  +G+++ P+
Sbjct: 411 RPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPS 469
Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN------SSLTKEDVQKFVVKQV 170
           E+E  L+ HP +++  VI  PDP  GEV  A+VV +          LTKE +Q+ V    
Sbjct: 470 EVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKE-LQQHVKSVT 528
Query: 171 ARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205
           A YK  R + F  ++PKT +GKI R    AKLR K
Sbjct: 529 APYKYPRKIEFVLNLPKTVTGKIQR----AKLRDK 559

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 110/215 (51%), Gaps = 20/215 (9%)
Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR-GPI 60
           YG TET G+  + +  + ++  G  G   +  + QI+  D    LPP   G++ +R  PI
Sbjct: 354 YGQTET-GLTCMVSKTMKIK-PGYMGTAASCYDVQII-DDKGNVLPPGTEGDIGIRVKPI 410
Query: 61  ----LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
               +  GY +N   T   I  + WL  GD G  DE G    + R  ++I  +G+++ P+
Sbjct: 411 RPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPS 469
Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN------SSLTKEDVQKFVVKQV 170
           E+E  L+ HP +++  VI  PDP  GEV  A+VV +          LTKE +Q+ V    
Sbjct: 470 EVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKE-LQQHVKSVT 528
Query: 171 ARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205
           A YK  R + F  ++PKT +GKI R    AKLR K
Sbjct: 529 APYKYPRKIEFVLNLPKTVTGKIQR----AKLRDK 559

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 12/213 (5%)
Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR--- 57
           G+G TET  VVT+          GS G+   G + +++  D  +     + GE+ +    
Sbjct: 372 GFGQTET--VVTIATFPWMEPKPGSIGKPTPGYKIELMDRDG-RLCEVGEEGEIVINTME 428
Query: 58  -GPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
             P+ +  ++  +         +G+ HTGD+ + DE G L+ V R  ++IK +G++V P 
Sbjct: 429 GKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPF 488
Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV----RSPNSSLTKEDVQKFVVKQVAR 172
           E+E  L+ HP +L+  +   PDP  G+V  A +V     +P+ SL K ++Q  V    A 
Sbjct: 489 EVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSL-KNELQDHVKNVTAP 547
Query: 173 YKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205
           YK  R + F   +PKT SGKI R E+  K +S+
Sbjct: 548 YKYPRIIEFVPELPKTISGKIRRVEIRDKDQSQ 580

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 2/192 (1%)
Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
           YGMTET   +   NP  G +  G+ G  + GV A++   +T   LP   +G + V GP +
Sbjct: 300 YGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNV 357
Query: 62  MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGV 121
             GY+   + T      +G+  TGDLG  DE G + I+ R  +L+   GF V P E+E  
Sbjct: 358 FXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESE 417
Query: 122 LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTF 181
           + + P ++++ VI  P  + GE   A+VV     + ++  V   +  Q+A +     V F
Sbjct: 418 IDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEAQVLHGLDGQLAXFXMPXXVIF 477
Query: 182 TNSIPKTTSGKI 193
            + +P+ T G +
Sbjct: 478 VDDLPRNTMGAV 489

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 14/200 (7%)
Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQ--VGELWVRG 58
            +GMTETC       P +      + G   A V+ +I          PN+   GEL ++G
Sbjct: 304 SFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIK--------NPNKEGHGELMIKG 355
Query: 59  PILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAEL 118
             +M GY      T     + G+ +TGD+   D  G + I DR K+LI   G  + P ++
Sbjct: 356 ANVMNGYLYPTDLTGTF--ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQI 413
Query: 119 EGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRN 178
           E V    P I DAV +  PD   G+VP  Y V    S ++K  +  ++ K +A+YK  ++
Sbjct: 414 ETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKAQLIAYLSKHLAKYKVPKH 471
Query: 179 VTFTNSIPKTTSGKILRREL 198
               +++P T++GK+ R +L
Sbjct: 472 FEKVDTLPYTSTGKLQRNKL 491

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
Query: 44  KPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIK 103
            PLP  +VG L  RGP    GY+ + Q      D  G+  +GDL   D  G + +  R K
Sbjct: 375 NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREK 434
Query: 104 ELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAY-VVRSPNSSLTKEDV 162
           + I   G ++A  E+E +L+ HP ++ A ++   D   GE   AY VV+ P   L    V
Sbjct: 435 DQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEP---LRAVQV 491
Query: 163 QKFVVKQ-VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205
           ++F+ +Q +A +K    V   +S+P T  GK+ +++L   L S+
Sbjct: 492 RRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 97/181 (53%), Gaps = 2/181 (1%)
Query: 25  SAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHT 84
           + GR ++  +   +  +  + +P  ++G L  RGP    GY+ + +    + D++ + ++
Sbjct: 361 TQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYS 420
Query: 85  GDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEV 144
           GDL      G L +V RIK+ I   G ++A  E+E +++ HPE++ A ++   D + GE 
Sbjct: 421 GDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEK 480
Query: 145 PIAYVVRSPNSSLTKEDVQKFVVK-QVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLR 203
             A++V S N  L    +++ +++  +A+YK    +    S+P T  GK+ +++L + L 
Sbjct: 481 SCAFIV-SRNPELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILN 539
Query: 204 S 204
           +
Sbjct: 540 T 540

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 94/206 (45%), Gaps = 3/206 (1%)
Query: 2   YGMTE-TCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           +GM E       +++P   + N+   G+ ++  +   V  D  + + P + G L  RGP 
Sbjct: 330 FGMAEGLVNYTRLDDPEEIIVNT--QGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPY 387
Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
            + GY+  E+       ++G+  TGD+      G + +  R K+ I   G +VA  E+E 
Sbjct: 388 TIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVEN 447
Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
            L++HP + DA ++  PD   GE    +++    +    E       + +A YK    V 
Sbjct: 448 HLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVE 507
Query: 181 FTNSIPKTTSGKILRRELIAKLRSKI 206
           F  S P+T  GK+ ++ L   +  K+
Sbjct: 508 FVESFPQTGVGKVSKKALREAISEKL 533

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 8/184 (4%)
Query: 19  GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDK 78
           G    G+ GR V G E ++   +    +P  +VG+L+++GP     Y+NN + ++     
Sbjct: 347 GAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLG 405
Query: 79  EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPD 138
           E W+ +GD      +G      R  +++K +G  V+P E+E VLV H  +L+A V+    
Sbjct: 406 E-WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-- 462
Query: 139 PEAGEVPI-AYVVRSPN---SSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKIL 194
              G V   A+VV       S +  E+++ FV  ++A +K  R++ F + +PKT +GKI 
Sbjct: 463 DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQ 522
Query: 195 RREL 198
           R +L
Sbjct: 523 RFKL 526

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 77/169 (45%)
Query: 38  VCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLF 97
           V  D  + + P + G L  RGP  + GY+  E+       ++G+  TGD+      G + 
Sbjct: 365 VWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIV 424
Query: 98  IVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL 157
           +  R K+ I   G +VA  E+E  L++HP + DA  +  PD   GE    +++    +  
Sbjct: 425 VEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPK 484
Query: 158 TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI 206
             E       + +A YK    V F  S P+T  GK+ ++ L   +  K+
Sbjct: 485 AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 64  GYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLV 123
           GY N  QAT   + ++GW  T D+  +   G + I+ R+ ++I   G  + P+E+E VL 
Sbjct: 364 GYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG 422
Query: 124 SHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFV-VKQVARYKRLRNVTFT 182
           + P + + VVI   D   G+   A VV     +L+ + +  F    ++A +KR +     
Sbjct: 423 TAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFIL 482
Query: 183 NSIPKTTSGKILRRELIAKLRS 204
           + +PK    K+LRR+L+ ++ S
Sbjct: 483 DQLPKNALNKVLRRQLVQQVSS 504

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 64  GYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLV 123
           GY N  QAT   + ++GW  T D+  +   G + I+ R+ ++I   G  + P+E+E VL 
Sbjct: 364 GYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG 422
Query: 124 SHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFV-VKQVARYKRLRNVTFT 182
           + P + + VVI   D   G+   A VV     +L+ + +  F    ++A +KR +     
Sbjct: 423 TAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFIL 482
Query: 183 NSIPKTTSGKILRRELIAKLRS 204
           + +PK    K+LRR+L+ ++ S
Sbjct: 483 DQLPKNALNKVLRRQLVQQVSS 504

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 64  GYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLV 123
           GY N  QAT   + ++GW  T D+  +   G + I+ R+ ++I   G  + P+E+E VL 
Sbjct: 364 GYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG 422
Query: 124 SHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFV-VKQVARYKRLRNVTFT 182
           + P + + VVI   D   G+   A VV     +L+ + +  F    ++A +KR +     
Sbjct: 423 TAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFIL 482
Query: 183 NSIPKTTSGKILRRELIAKLRS 204
           + +PK    K+LRR+L+ ++ S
Sbjct: 483 DQLPKNALNKVLRRQLVQQVSS 504

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 84  TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGE 143
           +GD    DE G  +I  R+ +++  +G ++  AE+E  LV+HP+I +A V+  P    G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 144 VPIAYVV----RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
              AYV       P+  L  E V+ +V K++        + +T+S+PKT SGKI+RR L
Sbjct: 558 AIYAYVTLNHGEEPSPELYAE-VRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 64  GYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLV 123
           GY N  QAT   + ++GW  T D+  +   G + I+ R+ ++I   G  + P+E+E VL 
Sbjct: 364 GYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLG 422
Query: 124 SHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFV-VKQVARYKRLRNVTFT 182
           + P + + VVI   D   G+   A VV     +L+ + +  F    ++A +KR +     
Sbjct: 423 TAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFIL 482
Query: 183 NSIPKTTSGKILRRELIAKLRS 204
           + +PK    K+LRR+L+ ++ S
Sbjct: 483 DQLPKNALNKVLRRQLVQQVSS 504

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 84  TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGE 143
           +GD    DE G  +I  R+ +++  +G ++  AE+E  LV+HP+I +A V+  P    G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 144 VPIAYVV----RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
              AYV       P+  L  E V+ +V K++        + +T+S+PKT SGKI+RR L
Sbjct: 558 AIYAYVTLNHGEEPSPELYAE-VRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 84  TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGE 143
           +GD    DE G  +I  R+ +++  +G ++  AE+E  LV+HP+I +A V+  P    G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 144 VPIAYVV----RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
              AYV       P+  L  E V+ +V K++        + +T+S+PKT SGKI+RR L
Sbjct: 558 AIYAYVTLNHGEEPSPELYAE-VRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 84  TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGE 143
           +GD    DE G  +I  R+ +++  +G ++  AE+E  LV+HP+I +A V+  P    G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 144 VPIAYVV----RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
              AYV       P+  L  E V+ +V K++        + +T+S+PKT SGKI+RR L
Sbjct: 558 AIYAYVTLNHGEEPSPELYAE-VRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 84  TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGE 143
           +GD    DE G  +I  R+ +++  +G ++  AE+E  LV+HP+I +A V+  P    G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 144 VPIAYVV----RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
              AYV       P+  L  E V+ +V K++        + +T+S+PKT SGKI+RR L
Sbjct: 558 AIYAYVTLNHGEEPSPELYAE-VRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 84  TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGE 143
           +GD    DE G  +I  R+ +++  +G ++  AE+E  LV+HP+I +A V+  P    G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 144 VPIAYVV----RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
              AYV       P+  L  E V+ +V K++        + +T+S+PKT SGKI+RR L
Sbjct: 558 AIYAYVTLNHGEEPSPELYAE-VRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 64  GYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLV 123
           GY N  +AT   + ++GW  T D+  +   G + I+ R+ ++I   G  + P+E+E VL 
Sbjct: 364 GYLNQPEATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG 422
Query: 124 SHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFV-VKQVARYKRLRNVTFT 182
           + P + + VVI   D   G+   A VV     +L+ + +  F    ++A +KR +     
Sbjct: 423 TAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFIL 482
Query: 183 NSIPKTTSGKILRRELIAKLRS 204
           + +PK    K+LRR+L+ ++ S
Sbjct: 483 DQLPKNALNKVLRRQLVQQVSS 504

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Query: 64  GYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLV 123
           GY N  QAT   + ++GW  T D+  +   G + I+ R+ + I   G  + P+E+E VL 
Sbjct: 364 GYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLG 422
Query: 124 SHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFV-VKQVARYKRLRNVTFT 182
           + P + + VVI   D   G+   A VV     +L+ + +  F    ++A +KR +     
Sbjct: 423 TAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFIL 482
Query: 183 NSIPKTTSGKILRRELIAKLRS 204
           + +PK    K+LRR+L+ ++ S
Sbjct: 483 DQLPKNALNKVLRRQLVQQVSS 504

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 96/213 (45%), Gaps = 14/213 (6%)
Query: 1   GYGMTETCGVVTVENPLLGVQNSGSA---GRLVAGVEAQIVCVDTLKPLPPNQVGELWVR 57
           GYG  E+ G  T  + ++    SG+A   G  +AG  A ++  D LKP     +GEL+V 
Sbjct: 358 GYGPAESMGFTT-HHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVA 415
Query: 58  GPILMPGYFNNEQ--ATKLIID------KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCN 109
           G  L  GY +     A + + D       E    TGDL      G L  V R  + +K  
Sbjct: 416 GAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIR 475
Query: 110 GFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV-RSPNSSLTKEDVQKFVVK 168
           GF+V P E+E  LV HP +  A V+        +  +AYVV    ++     ++++ V +
Sbjct: 476 GFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAE 535
Query: 169 QVARYKRLRNVTFTNSIPKTTSGKILRRELIAK 201
            +  Y         + +P+T +GK+ RR L   
Sbjct: 536 ALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
Query: 84  TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGE 143
           +GD    DE G  +I  R+ +++  +G ++  AE+E  LV+HP+I +A V+  P    G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 144 VPIAYVV----RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
              AYV       P+  L  E V+ +V K++        + +T+S+PKT SG I+RR L
Sbjct: 558 AIYAYVTLNHGEEPSPELYAE-VRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRIL 615

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 45  PLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKE 104
           P+    VG + + GP L  GYF + Q ++  I   GWL TGDLGY  + G L++  RIK+
Sbjct: 404 PVAERVVGHICISGPSLXSGYFGD-QVSQDEIAATGWLDTGDLGYLLD-GYLYVTGRIKD 461
Query: 105 LIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQ- 163
           LI   G  + P ++E +    PEI     I F   +        ++      ++ E+ + 
Sbjct: 462 LIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEK------IILQIQCRISDEERRG 515
Query: 164 KFVVKQVARYKRLRNVTFT------NSIPKTTSGKILRRE 197
           + +    AR +    VT        +SIP+T+SGK  R E
Sbjct: 516 QLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAE 555

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 10/129 (7%)
Query: 80  GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDP 139
           G+  TGD    D+ G ++I+ R+ +++  +G +++ AE+E  ++  P + +  V+ F D 
Sbjct: 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDD 562
Query: 140 EAGEVPIAYVVRSPNSSLTK------EDVQKFVV----KQVARYKRLRNVTFTNSIPKTT 189
             G+   A+VV    SS +       +D++K +V    K +  +   + +   + +PKT 
Sbjct: 563 LTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTR 622
Query: 190 SGKILRREL 198
           SGKI+RR L
Sbjct: 623 SGKIMRRIL 631

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Query: 47  PPNQVGELWVRGPILMPGYFNNEQATK-LIIDK-----EGWLHTGDLGYFDEHGQLFIVD 100
           P   VGEL + G  +  GY N    TK   I+      E    TGDL  +   G +    
Sbjct: 799 PFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAG 858
Query: 101 RIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPI-AYVVRSPNSSLTK 159
           RI + +K  G ++   E+E  L  +P + DAVV+     E+G+  I AY+V    + L+ 
Sbjct: 859 RIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVA-DRHESGDASINAYLVN--RTQLSA 915
Query: 160 EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
           EDV+  + KQ+  Y   +  TF + +P TT+GK+ +R L
Sbjct: 916 EDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLL 954

>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Query: 47  PPNQVGELWVRGPILMPGYFNNEQATK---LIIDKEGWLHTGDLGYFDEHGQLFIVDRIK 103
           P  + GE+ + GP +  GY  + + T+    +ID E    TGD GY  E+G LF   R+ 
Sbjct: 341 PDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLD 399
Query: 104 ELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE--- 160
             IK +G+++   E+E  L +   +  AV++P    E  +  +A VV   + S  KE   
Sbjct: 400 FQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH-SFEKEFKL 458
Query: 161 --DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204
              ++K + +++  Y   R   + +SIP T +GK+ R++L++++ +
Sbjct: 459 TSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTA 504

>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Query: 47  PPNQVGELWVRGPILMPGYFNNEQATK---LIIDKEGWLHTGDLGYFDEHGQLFIVDRIK 103
           P  + GE+ + GP +  GY  + + T+    +ID E    TGD GY  E+G LF   R+ 
Sbjct: 341 PDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLD 399
Query: 104 ELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE--- 160
             IK +G+++   E+E  L +   +  AV++P    E  +  +A VV   + S  KE   
Sbjct: 400 FQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH-SFEKEFKL 458
Query: 161 --DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204
              ++K + +++  Y   R   + +SIP T +GK+ R++L++++ +
Sbjct: 459 TSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTA 504

>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 10/206 (4%)
Query: 2   YGMTE-TCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTL-KPLPPNQVGELWVRGP 59
           YG TE T  V +VE     +  S S     A  +  I  +D   +PLP  + GE+ + GP
Sbjct: 293 YGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGP 352
Query: 60  ILMPGYFNNEQAT-KLIIDKEG-WLH-TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
            +  GY    + T K     EG W + TGD G+  + GQ+F   R+   IK +G+++   
Sbjct: 353 SVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQD-GQIFCQGRLDFQIKLHGYRMELE 411
Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVA----R 172
           E+E  +     +  AVVIP+      E  IA +V   +    +  +   + K++A     
Sbjct: 412 EIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPA 471
Query: 173 YKRLRNVTFTNSIPKTTSGKILRREL 198
           Y   R   + + I  T +GKI R+ +
Sbjct: 472 YMIPRKFIYQDHIQMTANGKIDRKRI 497

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GY +TE+CG  T+      ++ +GSAGR     +  +   D +  +  +  GE+ ++  I
Sbjct: 300 GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV--IREHGEGEVVIKSDI 357
Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVD 100
           L+  Y+N  +AT+   D  GW  TGD+G  D+ G L+I D
Sbjct: 358 LLKEYWNRPEATRDAFDN-GWFRTGDIGEIDDEGYLYIKD 396

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 13/117 (11%)
Query: 22  NSGSAGRLVAG----VEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKL--- 74
           NS  + +LV+      E +I+  DTL P   +QVGE+WV+   +  GY+N  + T+    
Sbjct: 366 NSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFA 425
Query: 75  --IIDKEG---WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHP 126
             I D E    +L TGDLG+  E  +L++  RIK+LI   G    P ++E  L   P
Sbjct: 426 GKIKDDERSAIYLRTGDLGFLHE-NELYVTGRIKDLIIIYGKNHYPQDIEFSLXHSP 481

>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing Adenylation And Pcp Domains Length = 620

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 20/217 (9%)
Query: 1   GYGMTE----TCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWV 56
           GYG TE    TC  V  ++ L   ++    G+ +AG    ++     +   P++ GE+  
Sbjct: 308 GYGPTENTTFTCCHVVTDDDL--EEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVA 365
Query: 57  RGPILMPGYFNNEQATK---LIIDKEGWL----HTGDLGYFDEHGQLFIVDRIKELIKCN 109
            G  L  GY N+   T+   + +   G L     TGD   +DE G+L  + R    +K N
Sbjct: 366 FGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLN 425
Query: 110 GFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQ 169
           G+++    LE      P ILD  ++        ++  A+  ++  S        + +++Q
Sbjct: 426 GYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASP-------QALLRQ 478
Query: 170 VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI 206
           +  ++R        ++P T  GK+ R  L+ +L   +
Sbjct: 479 LPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEPL 515

>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 11/173 (6%)
Query: 44  KPLPPNQVGELWVRGPILMPGYFNNEQATK---LIIDKEGWLHTGDLGYFDEHGQLFIVD 100
           K L   + GE+ V GP +  GY NN + T         +   HTGD+G   E   L    
Sbjct: 341 KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGG 400
Query: 101 RIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAG-EVPIAYVV-------RS 152
           R+   IK  G+++   ++   L   P +  AV +P  + E   +  +AY+V       R 
Sbjct: 401 RLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERF 460
Query: 153 PNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205
                  + ++  V   +  Y       + +S+P T +GKI  + LI ++ ++
Sbjct: 461 DRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNR 513

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 35  AQIVCVD-TLKPLPPNQVGELWVRGPILMPGYFNN-EQATKLIIDK-----EGWLHTGDL 87
            QI  VD  L+     + GEL + G  L  GY+   E  ++  +D      E    TGD 
Sbjct: 355 TQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ 414
Query: 88  GYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIA 147
             +   G +  + RI   +K  G +V   E+E +L+ H  I +  V    D +      A
Sbjct: 415 ARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCA 474
Query: 148 YVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
           Y V   +  L  E +++F  +++  Y         + +P T++GKI R++L
Sbjct: 475 YFVSEKHIPL--EQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 523

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-118
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-118
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-118
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-116
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-108
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	4e-84
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	7e-81
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	3e-78
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-77
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-76
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	2e-75
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	2e-68
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	8e-66
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	9e-65
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	1e-64
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	4e-60
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	5e-53
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-49
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	7e-40
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	4e-37
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	2e-23
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	3e-19
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	5e-18
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	8e-16
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-15
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-13
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	4e-13
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-12
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	7e-12
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	9e-10
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  346 bits (889), Expect = e-118
 Identities = 95/207 (45%), Positives = 132/207 (63%), Gaps = 3/207 (1%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET   + +  P  G    G+ G++V   EA++V +DT K L  NQ GEL VRGP+
Sbjct: 339 GYGLTETTSAILI-TPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPM 396

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY NN +AT  +IDK+GWLH+GD+ Y+DE    FIVDR+K LIK  G+QVAPAELE 
Sbjct: 397 IMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELES 456

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRN-V 179
           +L+ HP I DA V   PD +AGE+P A VV     ++T++++  +V  QV   K+LR  V
Sbjct: 457 ILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGV 516

Query: 180 TFTNSIPKTTSGKILRRELIAKLRSKI 206
            F + +PK  +GK+  R++   L    
Sbjct: 517 VFVDEVPKGLTGKLDARKIREILIKAK 543

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  345 bits (887), Expect = e-118
 Identities = 103/207 (49%), Positives = 139/207 (67%), Gaps = 5/207 (2%)

Query: 1   GYGMTETCGVVTVENPLLGVQN----SGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWV 56
           GYGMTE   V+ +       +      G+ G +V   E +IV  +T   LP NQ GE+ +
Sbjct: 329 GYGMTEAGPVLAM-CLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICI 387

Query: 57  RGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
           RG  +M GY N+ +AT   IDKEGWLHTGD+GY D+  +LFIVDR+KELIK  GFQVAPA
Sbjct: 388 RGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPA 447

Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRL 176
           ELE +L++HPEI DA V+   D +AGEVP+A+VV+S  S  T++++++++ KQV  YKR+
Sbjct: 448 ELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRI 507

Query: 177 RNVTFTNSIPKTTSGKILRRELIAKLR 203
           + V F  +IPK  SGKILR+ L  KL 
Sbjct: 508 KRVFFIEAIPKAPSGKILRKNLKEKLA 534

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  345 bits (887), Expect = e-118
 Identities = 99/207 (47%), Positives = 137/207 (66%), Gaps = 3/207 (1%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET   + +  P  G    G++G++V   +A+++ +DT K L PN+ GE+ V+GP+
Sbjct: 341 GYGLTETTSAIII-TPE-GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPM 398

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           LM GY NN +ATK +ID+EGWLHTGD+GY+DE    FIVDR+K LIK  G+QV PAELE 
Sbjct: 399 LMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELES 458

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRN-V 179
           VL+ HP I DA V   PDP AGE+P A VV     ++T+++V  +V  QV+  KRLR  V
Sbjct: 459 VLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGV 518

Query: 180 TFTNSIPKTTSGKILRRELIAKLRSKI 206
            F + +PK  +GKI  R +   L+  +
Sbjct: 519 RFVDEVPKGLTGKIDGRAIREILKKPV 545

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  352 bits (904), Expect = e-116
 Identities = 104/202 (51%), Positives = 134/202 (66%), Gaps = 3/202 (1%)

Query: 1   GYGMTETCGVVTV---ENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR 57
           GYGMTE   V+ +            SG+ G +V   E +IV  DT   L  NQ GE+ +R
Sbjct: 376 GYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIR 435

Query: 58  GPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAE 117
           G  +M GY NN  AT   IDK+GWLHTGD+G  D+  +LFIVDR+KELIK  GFQVAPAE
Sbjct: 436 GHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAE 495

Query: 118 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR 177
           LE +L+ HP+I D  V+   +  AGEVP+A+VV+S +S L+++DV++FV KQV  YKR+ 
Sbjct: 496 LEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRIN 555

Query: 178 NVTFTNSIPKTTSGKILRRELI 199
            V FT SIPK  SGKILR++L 
Sbjct: 556 KVFFTESIPKAPSGKILRKDLR 577

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  319 bits (821), Expect = e-108
 Identities = 77/211 (36%), Positives = 123/211 (58%), Gaps = 7/211 (3%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
            +GMTE C +VT  NP L +  S + G  ++ +E +++ ++  + L   + GE+ +RGP 
Sbjct: 334 IWGMTEACPMVTT-NPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPN 392

Query: 61  LMPGYFNNEQATKLII----DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
           +  GY+  E+  +           +  TGD+G+ DE G L   DR+KE+IK  G+ +AP 
Sbjct: 393 IFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPF 452

Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN--SSLTKEDVQKFVVKQVARYK 174
           ELE +L+ H  ++D  VI  PD EAGEVP A++V  P     + +ED+ ++V ++++ YK
Sbjct: 453 ELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYK 512

Query: 175 RLRNVTFTNSIPKTTSGKILRRELIAKLRSK 205
           R+R V F   +P+T SGK+LRR L  K    
Sbjct: 513 RVREVEFVEELPRTASGKLLRRLLREKEAEG 543

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  256 bits (657), Expect = 4e-84
 Identities = 66/198 (33%), Positives = 107/198 (54%), Gaps = 2/198 (1%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
            YGMTET    +  NP  G +  G+ G  + GV A++   +T K LP   +G + V+GP 
Sbjct: 299 RYGMTETNMNTS--NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPN 356

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +  GY+   + TK     +G+  TGDLG  DE G + I+ R K+L+   GF V P E+E 
Sbjct: 357 VFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIES 416

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
            + + P ++++ VI  P  + GE   A VVR   +++ +  V   +  Q+A++K  + V 
Sbjct: 417 EIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVI 476

Query: 181 FTNSIPKTTSGKILRREL 198
           F + +P+ T GK+ +  L
Sbjct: 477 FVDDLPRNTMGKVQKNVL 494

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  248 bits (635), Expect = 7e-81
 Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 10/205 (4%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
            +GMTETC       P +      + G   A V+ +I   +          GEL ++G  
Sbjct: 304 SFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGAN 357

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY      T    +  G+ +TGD+   D  G + I DR K+LI   G  + P ++E 
Sbjct: 358 VMNGYLYPTDLTGTFEN--GYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIET 415

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           V    P I DAV +  PD   G+VP  Y V    S ++K  +  ++ K +A+YK  ++  
Sbjct: 416 VAKQFPGISDAVCVGHPDDTWGQVPKLYFV--SESDISKAQLIAYLSKHLAKYKVPKHFE 473

Query: 181 FTNSIPKTTSGKILRRELIAKLRSK 205
             +++P T++GK+ R +L  +    
Sbjct: 474 KVDTLPYTSTGKLQRNKLYREGHHH 498

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  242 bits (619), Expect = 3e-78
 Identities = 66/198 (33%), Positives = 109/198 (55%), Gaps = 4/198 (2%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GY +TE+CG  T+      ++ +GSAGR     +  +   D          GE+ ++  I
Sbjct: 314 GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVR-GDDGVIREHG-EGEVVIKSDI 371

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           L+  Y+N  +AT+   D  GW  TGD+G  D+ G L+I DR+K++I   G  V PAE+E 
Sbjct: 372 LLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIES 430

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVT 180
           V++  P + +  VI  PD + GE+  A VV    + ++++ + ++   ++ARYK  + V 
Sbjct: 431 VIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQ-NEVSEQQIVEYCGTRLARYKLPKKVI 489

Query: 181 FTNSIPKTTSGKILRREL 198
           F  +IP+  +GKIL+  L
Sbjct: 490 FAEAIPRNPTGKILKTVL 507

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  239 bits (613), Expect = 2e-77
 Identities = 81/200 (40%), Positives = 109/200 (54%), Gaps = 7/200 (3%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
            +G +ET G+ T            SAGR +      +V  +  +PLPP +VGE+ +RGP 
Sbjct: 301 TFGQSETSGLSTF---APYRDRPKSAGRPLFWRTVAVVDAED-RPLPPGEVGEIVLRGPT 356

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRI--KELIKCNGFQVAPAEL 118
           +  GY+NN  AT+    + GW HTGD+G FD  G LF   R   KELIK  G  V PAE+
Sbjct: 357 VFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEV 415

Query: 119 EGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRN 178
           EG L  HP I DAVVI  PDP+  E   A  V  P  S+  + + +FV   +ARYK+ ++
Sbjct: 416 EGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKH 475

Query: 179 VTFTNSIPKTTSGKILRREL 198
           V F  ++PK   G I R  +
Sbjct: 476 VVFVEALPKDAKGAIDRAAV 495

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  237 bits (607), Expect = 1e-76
 Identities = 68/202 (33%), Positives = 105/202 (51%), Gaps = 6/202 (2%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDT--LKPLPPNQVGELWVRG 58
            YGMTET    +      G   +G+ G  + GVE ++V  D   +  L    VGE+ VRG
Sbjct: 303 RYGMTETLMNTS--VRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRG 360

Query: 59  PILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDR-IKELIKCNGFQVAPAE 117
           P L   Y N   AT     ++G+  TGD+   D  G + IV R   +LIK  G+++   E
Sbjct: 361 PNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGE 420

Query: 118 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV-RSPNSSLTKEDVQKFVVKQVARYKRL 176
           +E  L+ HPE+ +A V   PDP+ GE  +A++V   P +      +   V  ++A +KR 
Sbjct: 421 IENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRP 480

Query: 177 RNVTFTNSIPKTTSGKILRREL 198
           R V + +++P+   GKI++R L
Sbjct: 481 RVVRYLDAVPRNDMGKIMKRAL 502

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  234 bits (599), Expect = 2e-75
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 10/208 (4%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDT--LKPLPPNQVGELWVRG 58
            YG TE    + +  P  G     +        E +IV +     + +   + GEL V  
Sbjct: 303 IYGTTEAMNSLYMRQPKTG-----TEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357

Query: 59  P-ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAE 117
                 GY N  QAT   +  +GW  T D+  +   G + I+ R+ ++I   G  + P+E
Sbjct: 358 SDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE 416

Query: 118 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVK-QVARYKRL 176
           +E VL + P + + VVI   D   G+   A VV     +L+ + +  F    ++A +KR 
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRP 476

Query: 177 RNVTFTNSIPKTTSGKILRRELIAKLRS 204
           +     + +PK    K+LRR+L+ ++ S
Sbjct: 477 KRYFILDQLPKNALNKVLRRQLVQQVSS 504

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  217 bits (554), Expect = 2e-68
 Identities = 58/201 (28%), Positives = 99/201 (49%), Gaps = 8/201 (3%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           G G TE   +    N   G    G+ GR V G E ++   +    +P  +VG+L+++GP 
Sbjct: 331 GIGSTEMLHIFLS-NRA-GAVEYGTTGRPVPGYEIELR-DEAGHAVPDGEVGDLYIKGPS 387

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
               Y+NN + ++       W+ +GD      +G      R  +++K +G  V+P E+E 
Sbjct: 388 AAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEM 446

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN---SSLTKEDVQKFVVKQVARYKRLR 177
           VLV H  +L+A V+            A+VV       S +  E+++ FV  ++A +K  R
Sbjct: 447 VLVQHDAVLEAAVVGVDHGG-LVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPR 505

Query: 178 NVTFTNSIPKTTSGKILRREL 198
           ++ F + +PKT +GKI R +L
Sbjct: 506 DIVFVDDLPKTATGKIQRFKL 526

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  210 bits (537), Expect = 8e-66
 Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 3/207 (1%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGV-EAQIVCVDTLKPLPPNQVGELWVRGP 59
            +GM E     T  +         + GR ++   E +IV     + +P  ++G L  RGP
Sbjct: 338 VFGMAEGLVNYTRLDDSDEQI-FTTQGRPISSDDEIKIVDEQY-REVPEGEIGMLATRGP 395

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
               GY+ + +    + D++ + ++GDL      G L +V RIK+ I   G ++A  E+E
Sbjct: 396 YTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIE 455

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNV 179
            +++ HPE++ A ++   D + GE   A++V            +  +   +A+YK    +
Sbjct: 456 KLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGIAQYKLPDQI 515

Query: 180 TFTNSIPKTTSGKILRRELIAKLRSKI 206
               S+P T  GK+ +++L + L +  
Sbjct: 516 KLIESLPLTAVGKVDKKQLRSILNTST 542

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  209 bits (534), Expect = 9e-65
 Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 6/208 (2%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGR-LVAGVEAQIVCVDTLKPLPPNQVGELWVRGP 59
            +GM E     T        +   + G  +    E  +   +   PLP  +VG L  RGP
Sbjct: 333 VFGMAEGLVNYTR-LDDSAEKIIHTQGYPMCPDDEVWVADAEG-NPLPQGEVGRLMTRGP 390

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
               GY+ + Q      D  G+  +GDL   D  G + +  R K+ I   G ++A  E+E
Sbjct: 391 YTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIE 450

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVV-KQVARYKRLRN 178
            +L+ HP ++ A ++   D   GE   AY+V      L    V++F+  + +A +K    
Sbjct: 451 NLLLRHPAVIYAALVSMEDELMGEKSCAYLV--VKEPLRAVQVRRFLREQGIAEFKLPDR 508

Query: 179 VTFTNSIPKTTSGKILRRELIAKLRSKI 206
           V   +S+P T  GK+ +++L   L S+ 
Sbjct: 509 VECVDSLPLTAVGKVDKKQLRQWLASRA 536

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  207 bits (529), Expect = 1e-64
 Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 5/208 (2%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGR-LVAGVEAQIVCVDTLKPLPPNQVGELWVRGP 59
            +GM E     T  +    +    + G+ +    E+++   D  + + P + G L  RGP
Sbjct: 329 VFGMAEGLVNYTRLDDPEEII-VNTQGKPMSPYDESRVW-DDHDRDVKPGETGHLLTRGP 386

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
             + GY+  E+       ++G+  TGD+      G + +  R K+ I   G +VA  E+E
Sbjct: 387 YTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVE 446

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVV-KQVARYKRLRN 178
             L++HP + DA ++  PD   GE    +++     +    +++ F+  + +A YK    
Sbjct: 447 NHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKAAELKAFLRERGLAAYKIPDR 505

Query: 179 VTFTNSIPKTTSGKILRRELIAKLRSKI 206
           V F  S P+T  GK+ ++ L   +  K+
Sbjct: 506 VEFVESFPQTGVGKVSKKALREAISEKL 533

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  195 bits (498), Expect = 4e-60
 Identities = 62/209 (29%), Positives = 109/209 (52%), Gaps = 12/209 (5%)

Query: 1   GYGMTETCGVVTVENPLLGVQN---------SGSAGRLVAGVEAQIVCVDTLKPLPPN-- 49
           GYG+TET  VV        +++             G  +  V  ++   +  +P+P +  
Sbjct: 323 GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVA-DEEGRPVPKDGK 381

Query: 50  QVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCN 109
            +GE+ ++GP +  GY+ NE+AT+  +  +G+  TGD+  +DE G + I DR+K+LIK  
Sbjct: 382 ALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG 441

Query: 110 GFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQ 169
           G  ++  +LE  L+ HP++ +A V+  P P+  E P+A VV        +E  +  +   
Sbjct: 442 GEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAG 501

Query: 170 VARYKRLRNVTFTNSIPKTTSGKILRREL 198
            A+++      F   IP+T++GK L+R L
Sbjct: 502 FAKWQLPDAYVFAEEIPRTSAGKFLKRAL 530

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  177 bits (451), Expect = 5e-53
 Identities = 60/208 (28%), Positives = 95/208 (45%), Gaps = 14/208 (6%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGEL-----W 55
            YG TET                G  G   +  + QI+       LPP   G++      
Sbjct: 353 SYGQTETGLTCM--VSKTMKIKPGYMGTAASCYDVQIIDDKG-NVLPPGTEGDIGIRVKP 409

Query: 56  VRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAP 115
           +R   +  GY +N   T   I +  +   GD G  DE G    + R  ++I  +G+++ P
Sbjct: 410 IRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGP 468

Query: 116 AELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP-----NSSLTKEDVQKFVVKQV 170
           +E+E  L+ HP +++  VI  PDP  GEV  A+VV +      +     +++Q+ V    
Sbjct: 469 SEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVT 528

Query: 171 ARYKRLRNVTFTNSIPKTTSGKILRREL 198
           A YK  R + F  ++PKT +GKI R +L
Sbjct: 529 APYKYPRKIEFVLNLPKTVTGKIQRAKL 556

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  168 bits (427), Expect = 2e-49
 Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 14/207 (6%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG-- 58
           G+G TET   +    P +  +  GS G+   G + +++  D  +     + GE+ +    
Sbjct: 372 GFGQTETVVTIAT-FPWMEPK-PGSIGKPTPGYKIELMDRDG-RLCEVGEEGEIVINTME 428

Query: 59  --PI-LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAP 115
             P+ L   Y  + + T+     +G+ HTGD+ + DE G L+ V R  ++IK +G++V P
Sbjct: 429 GKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGP 487

Query: 116 AELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV----RSPNSSLTKEDVQKFVVKQVA 171
            E+E  L+ HP +L+  +   PDP  G+V  A +V     +P+ SL  E +Q  V    A
Sbjct: 488 FEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNE-LQDHVKNVTA 546

Query: 172 RYKRLRNVTFTNSIPKTTSGKILRREL 198
            YK  R + F   +PKT SGKI R E+
Sbjct: 547 PYKYPRIIEFVPELPKTISGKIRRVEI 573

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  134 bits (340), Expect = 4e-37
 Identities = 57/243 (23%), Positives = 93/243 (38%), Gaps = 40/243 (16%)

Query: 1   GYGMTETCGVVTVENP-------------------LLGVQNSGSAGRLV----AGVEAQI 37
            YG+ E   +VT   P                        NS  + +LV       E +I
Sbjct: 326 CYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKI 385

Query: 38  VCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII--------DKEGWLHTGDLGY 89
           +  DTL P   +QVGE+WV+   +  GY+N  + T+               +L TGDLG+
Sbjct: 386 IDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGF 445

Query: 90  FDEHGQLFIVDRIKELIKCNGFQVAPAELEG-VLVSHPEILDAVVIPFPDPEAGE---VP 145
             E  +L++  RIK+LI   G    P ++E  ++ S    +      F   E  E     
Sbjct: 446 LHE-NELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTV 504

Query: 146 IAYVVRSPNSSLTKEDVQKFVVKQVAR--YKRLRNVTF--TNSIPKTTSGKILRRELIAK 201
           +  V       + ++++   + + V       +  +      ++P TTSGKI R      
Sbjct: 505 MCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKH 564

Query: 202 LRS 204
           L  
Sbjct: 565 LLD 567

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 96.3 bits (240), Expect = 2e-23
 Identities = 28/134 (20%), Positives = 43/134 (32%), Gaps = 34/134 (25%)

Query: 1   GYGMTETCGVVTVENPLLG----------------VQNSGSAGRLVAGV------EAQIV 38
            Y + E    V    P                      +G     +           +IV
Sbjct: 348 SYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIV 407

Query: 39  CVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATK-----------LIIDKEGWLHTGDL 87
             DT    P   VGE+WV G  +  GY+     ++               +  WL TGD 
Sbjct: 408 DSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDS 467

Query: 88  GYFDEHGQLFIVDR 101
           G+  + G++FI+ R
Sbjct: 468 GFVTD-GKMFIIGR 480

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 84.2 bits (209), Expect = 3e-19
 Identities = 64/220 (29%), Positives = 96/220 (43%), Gaps = 38/220 (17%)

Query: 5   TETCGVVTVENPLLGVQNS--GSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILM 62
           TET G +    PL G      GSA R   GV+  +V  +   P      G L +      
Sbjct: 416 TETGGFMIT--PLPGAIELKAGSATRPFFGVQPALV-DNEGHPQEGATEGNLVITDS--W 470

Query: 63  PG---------------YFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIK 107
           PG               YF+           +    +GD    DE G  +I  R+ +++ 
Sbjct: 471 PGQARTLFGDHERFEQTYFSTF---------KNMYFSGDGARRDEDGYYWITGRVDDVLN 521

Query: 108 CNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV----RSPNSSLTKEDVQ 163
            +G ++  AE+E  LV+HP+I +A V+  P    G+   AYV       P+  L  E V+
Sbjct: 522 VSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAE-VR 580

Query: 164 KFVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL--IAK 201
            +V K++        + +T+S+PKT SGKI+RR L  IA 
Sbjct: 581 NWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAA 620

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 80.7 bits (200), Expect = 5e-18
 Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 44/228 (19%)

Query: 5   TETCGVVTVENPLLGVQNS---GSAGRLVAGVEAQIVCVDTLKPLPPNQV-GELWVRGPI 60
           TE+   +    PL G       GSA     G++A ++  +T + L  +   G L V+   
Sbjct: 422 TESGSHLVT--PLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAA- 478

Query: 61  LMPG---------------YFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKEL 105
             P                Y N            G+  TGD    D+ G ++I+ R+ ++
Sbjct: 479 -WPSFARTIWKNHDRYLDTYLNPY---------PGYYFTGDGAAKDKDGYIWILGRVDDV 528

Query: 106 IKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV------RSPNSSLTK 159
           +  +G +++ AE+E  ++  P + +  V+ F D   G+   A+VV       S  +    
Sbjct: 529 VNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDEL 588

Query: 160 EDVQKFVVKQVAR----YKRLRNVTFTNSIPKTTSGKILRREL--IAK 201
           +D++K +V  V +    +   + +   + +PKT SGKI+RR L  I  
Sbjct: 589 QDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILA 636

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 74.2 bits (183), Expect = 8e-16
 Identities = 37/216 (17%), Positives = 74/216 (34%), Gaps = 21/216 (9%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
            YG TE     +    +L   ++   G  +    A ++   + + +     GEL + G +
Sbjct: 325 VYGPTEVTIGCSAG-RILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSL 383

Query: 61  LMPGYFNNEQATKLIIDKEGWLH-TGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
           +  GY N   A          ++ TGD+   D    +  + R  E +K  G ++   E+ 
Sbjct: 384 VANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVS 443

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVP--IAYVVRSPNSSLTKEDVQKFVVKQVARYKRLR 177
            V+ S       VV    +         +++V    + +  + +++            LR
Sbjct: 444 EVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVA--SSGAAVRGELRWINENYKEINNSLR 501

Query: 178 N--------------VTFTNSIP-KTTSGKILRREL 198
                          +   + IP + TS K   + L
Sbjct: 502 QACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKAL 537

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 71.8 bits (177), Expect = 4e-15
 Identities = 50/215 (23%), Positives = 83/215 (38%), Gaps = 19/215 (8%)

Query: 2   YGMTETCGVVT---VENPLLGVQNSGSAGRLVAGVEAQIVCVDT-LKPLPPNQVGELWVR 57
           YG TE    ++   +   ++        G         I+  D   K L   + GE+ V 
Sbjct: 297 YGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYII--DEDGKELSSGEQGEIIVT 354

Query: 58  GPILMPGYFNNEQ--ATKLIIDKEGWL-HTGDLGYFDEHGQLFIVDRIKELIKCNGFQVA 114
           GP +  GY NN +  A      K     HTGD+G   E   L    R+   IK  G+++ 
Sbjct: 355 GPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIE 414

Query: 115 PAELEGVLVSHPEILDAVVIPFPDPEAGEVP--IAYVVRSPNSSLTK-------EDVQKF 165
             ++   L   P +  AV +P  + +  +V   +AY+V                + ++  
Sbjct: 415 LEDVSQQLNQSPMVASAVAVPRYN-KEHKVQNLLAYIVVKDGVKERFDRELELTKAIKAS 473

Query: 166 VVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIA 200
           V   +  Y       + +S+P T +GKI  + LI 
Sbjct: 474 VKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLIN 508

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 66.4 bits (163), Expect = 4e-13
 Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 14/208 (6%)

Query: 2   YGMTETCGVVT---VENPLLGVQNSGSAGRLVAGVEAQIVCVDT-LKPLPPNQVGELWVR 57
           YG TE    VT   + N ++    S   G     +   I  +D   +PLP  + GE+ + 
Sbjct: 293 YGPTEATVAVTSVEITNDVISRSESLPVGFAKPDM--NIFIMDEEGQPLPEGEKGEIVIA 350

Query: 58  GPILMPGYFNNEQ--ATKLIIDKEGWL-HTGDLGYFDEHGQLFIVDRIKELIKCNGFQVA 114
           GP +  GY    +         +  W   TGD G+  + GQ+F   R+   IK +G+++ 
Sbjct: 351 GPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRME 409

Query: 115 PAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV----RSPNSSLTKEDVQKFVVKQV 170
             E+E  +     +  AVVIP+      E  IA +V               ++K +   +
Sbjct: 410 LEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASL 469

Query: 171 ARYKRLRNVTFTNSIPKTTSGKILRREL 198
             Y   R   + + I  T +GKI R+ +
Sbjct: 470 PAYMIPRKFIYQDHIQMTANGKIDRKRI 497

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 66.5 bits (163), Expect = 4e-13
 Identities = 53/218 (24%), Positives = 86/218 (39%), Gaps = 35/218 (16%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSA--GRLVAGVEAQIVCVDT-LKPLPPNQVGELWVR 57
            YG TE     T         +  S   G+ ++     I+  +   +  P   VGEL + 
Sbjct: 752 CYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYIL--NEQSQLQPFGAVGELCIS 809

Query: 58  GPILMPGYFNNEQ--ATKLIID---------KEGWLHTGDLGYFDEHGQLFIVDRIKELI 106
           G  +  GY N       K I +         +     TGDL  +   G +    RI + +
Sbjct: 810 GMGVSKGYVNRADLTKEKFIENPFKPGETLYR-----TGDLARWLPDGTIEYAGRIDDQV 864

Query: 107 KCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFV 166
           K  G ++   E+E  L  +P + DAVV+            AY+V    + L+ EDV+  +
Sbjct: 865 KIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLV--NRTQLSAEDVKAHL 922

Query: 167 VKQV------ARYKRLRNVTFTNSIPKTTSGKILRREL 198
            KQ+        +  L      + +P TT+GK+ +R L
Sbjct: 923 KKQLPAYMVPQTFTFL------DELPLTTNGKVNKRLL 954

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 63.7 bits (156), Expect = 3e-12
 Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 14/208 (6%)

Query: 2   YGMTETCGVVT---VENPLLGVQNSGSAGRLVAGVEAQIVCVDT-LKPLPPNQVGELWVR 57
           YG TE    VT   V   +L    S   G   +     I+         P  + GE+ + 
Sbjct: 294 YGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIM--KEDGTIAPDGEKGEIVIV 351

Query: 58  GPILMPGYFNNEQAT--KLIIDKEGWLH-TGDLGYFDEHGQLFIVDRIKELIKCNGFQVA 114
           GP +  GY  + + T     +      + TGD GY +  G LF   R+   IK +G+++ 
Sbjct: 352 GPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVEN-GLLFYNGRLDFQIKLHGYRME 410

Query: 115 PAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS----LTKEDVQKFVVKQV 170
             E+E  L +   +  AV++P    E  +  +A VV   +S          ++K + +++
Sbjct: 411 LEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERL 470

Query: 171 ARYKRLRNVTFTNSIPKTTSGKILRREL 198
             Y   R   + +SIP T +GK+ R++L
Sbjct: 471 PNYMIPRKFMYQSSIPMTPNGKVDRKKL 498

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 62.5 bits (153), Expect = 7e-12
 Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 12/206 (5%)

Query: 1   GYGMTETCGVVTV-ENPLLGVQNSGSAGRLVAGVEAQIVCVDT-LKPLPPNQVGELWVRG 58
            YG TET    T        + +S   G  +   +  IV  D  L+     + GEL + G
Sbjct: 322 AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIV--DENLQLKSVGEAGELCIGG 379

Query: 59  PILMPGYFNNEQAT--KLIID---KEGWL-HTGDLGYFDEHGQLFIVDRIKELIKCNGFQ 112
             L  GY+   + T  K + +       L  TGD   +   G +  + RI   +K  G +
Sbjct: 380 EGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHR 439

Query: 113 VAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVAR 172
           V   E+E +L+ H  I +  V    D +      AY V      +  E +++F  +++  
Sbjct: 440 VELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFV--SEKHIPLEQLRQFSSEELPT 497

Query: 173 YKRLRNVTFTNSIPKTTSGKILRREL 198
           Y         + +P T++GKI R++L
Sbjct: 498 YMIPSYFIQLDKMPLTSNGKIDRKQL 523

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 56.4 bits (137), Expect = 9e-10
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 23/169 (13%)

Query: 1   GYGMTETCGVVTVE--NPLLGVQNSGSAGRLVAGVEAQIVCVDT-LKPLPPNQV-GELWV 56
           GYG TE                ++    G+ +AG    ++  D   + +      GE+  
Sbjct: 308 GYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLL--DEHGQEIAEPDRAGEIVA 365

Query: 57  RGPILMPGYFNNEQ--ATKLIID----------KEGWLHTGDLGYFDEHGQLFIVDRIKE 104
            G  L  GY N+        +            +     TGD   +DE G+L  + R   
Sbjct: 366 FGAGLAQGYRNDAARTRASFVELPYRGRLLRAYR-----TGDRARYDEQGRLRFIGRGDG 420

Query: 105 LIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP 153
            +K NG+++    LE      P ILD  ++        ++  A+  ++ 
Sbjct: 421 QVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKAD 469

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 52.0 bits (124), Expect = 3e-08
 Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 5/88 (5%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWV---R 57
            YG T   GV +    +               +   +V   T + +   + G + V    
Sbjct: 264 SYGSTSALGV-SRSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLS 322

Query: 58  GPILMPGYFNNEQATKLIIDKEGWLHTG 85
                P     + A + +    G+    
Sbjct: 323 PWAFYPRVAERDTAIR-LPGVSGFAGDR 349

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 17/139 (12%), Positives = 45/139 (32%), Gaps = 22/139 (15%)

Query: 86  DLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVP 145
           + G      +  +       +     +      + +L    E +D +++   D  +G + 
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK--EEIDHIIMS-KDAVSGTLR 66

Query: 146 IAYVVRSPNSSLTKEDVQ-------KFVVKQVA-----------RYKRLRNVTFTNSIPK 187
           + + + S    + ++ V+       KF++  +             Y   R+  + N    
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-NDNQV 125

Query: 188 TTSGKILRRELIAKLRSKI 206
                + R +   KLR  +
Sbjct: 126 FAKYNVSRLQPYLKLRQAL 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.97
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.97
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	99.84
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.7
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.7
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.1
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.58
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.47
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.47

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.3e-46  Score=314.11  Aligned_cols=203  Identities=32%  Similarity=0.514  Sum_probs=189.4

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++..++...  .....++++|+|+|+++++|+|+++++++|.|+.|||+|+||+++.||+++++.+...|..++
T Consensus       299 ~YG~TE~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g  376 (503)
T 4fuq_A          299 RYGMTETNMNTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDG  376 (503)
T ss_dssp             CCEETTTEECBCCCS--SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTS
T ss_pred             eEcccccCcccccCC--CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCC
Confidence            599999987654322  234567899999999999999989999999999999999999999999999999999887899


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..+....+.+
T Consensus       377 ~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~  456 (503)
T 4fuq_A          377 FFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEA  456 (503)
T ss_dssp             CEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred             CeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999998888999999999888888899


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      ++++++++.|+.|++|..++++++||+|++||++|++|++++++.
T Consensus       457 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~  501 (503)
T 4fuq_A          457 QVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI  501 (503)
T ss_dssp             HHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred             HHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999998764

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=3.7e-46  Score=313.46  Aligned_cols=204  Identities=50%  Similarity=0.822  Sum_probs=186.9

Q ss_pred             CcccccCccceeccC---CccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc
Q 043808            1 GYGMTETCGVVTVEN---PLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~---~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~   77 (206)
                      +||+||++.+++...   .......++++|+|+++++++|+|+++++++|.|+.|||+|+|++++.||+++++.+...|+
T Consensus       329 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~  408 (536)
T 3ni2_A          329 GYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTID  408 (536)
T ss_dssp             EEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred             cccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhcc
Confidence            499999998765432   12224467889999999999999988999999999999999999999999999999998898


Q ss_pred             CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCC
Q 043808           78 KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL  157 (206)
Q Consensus        78 ~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  157 (206)
                      .++||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..+....
T Consensus       409 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~  488 (536)
T 3ni2_A          409 KEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQA  488 (536)
T ss_dssp             TTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC
T ss_pred             CCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999988888999999999888888


Q ss_pred             CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          158 TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       158 ~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      +.++++++++++|+.|+.|..++++++||+|++||++|++|+++++.
T Consensus       489 ~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~  535 (536)
T 3ni2_A          489 TEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG  535 (536)
T ss_dssp             CHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred             CHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence            89999999999999999999999999999999999999999988764

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=3.2e-45  Score=308.49  Aligned_cols=204  Identities=48%  Similarity=0.829  Sum_probs=189.1

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++.+++....  .....+++|+|+|+++++|+|++++++++.|+.|||+|+|++++.||+++++.+...|+.++
T Consensus       341 ~YG~TE~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g  418 (548)
T 2d1s_A          341 GYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEG  418 (548)
T ss_dssp             EEECGGGSSEEEECCT--TCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTS
T ss_pred             ccccccccceeeecCc--ccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCc
Confidence            4999999987765322  23567899999999999999988999999999999999999999999999999988887899


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++|++.+....+.+
T Consensus       419 ~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~  498 (548)
T 2d1s_A          419 WLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEK  498 (548)
T ss_dssp             CEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred             EEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999988888899999998877677889


Q ss_pred             HHHHHHHHhccccCcee-EEEEeCCcCCCCCCcccHHHHHHHHHccC
Q 043808          161 DVQKFVVKQVARYKRLR-NVTFTNSIPKTTSGKILRRELIAKLRSKI  206 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~-~~~~v~~~P~t~~GKv~r~~l~~~~~~~~  206 (206)
                      +++++++++|+.++.|. .++++++||+|++||++|++|++++++.|
T Consensus       499 ~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i  545 (548)
T 2d1s_A          499 EVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPV  545 (548)
T ss_dssp             HHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC
T ss_pred             HHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhh
Confidence            99999999999999999 99999999999999999999999998765

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=8.6e-45  Score=303.98  Aligned_cols=202  Identities=32%  Similarity=0.572  Sum_probs=185.6

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      +||+||++..++...........+++|+|++++.++++| ++++.++.| .|||+|+||+++.||+++++.++..| .++
T Consensus       314 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g  390 (517)
T 3r44_A          314 GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNG  390 (517)
T ss_dssp             EEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETT
T ss_pred             eecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCC
Confidence            499999998877665444456678999999999999999 788999999 89999999999999999999998888 789


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.+++++ ..+....+.+
T Consensus       391 ~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~  469 (517)
T 3r44_A          391 WFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQ  469 (517)
T ss_dssp             EEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHH
T ss_pred             CEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHH
Confidence            999999999999999999999999999999999999999999999999999999999888888888888 5556677889


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHccC
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI  206 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~~  206 (206)
                      ++++++++.|+.|++|..++++++||+|++||++|++|++++++.+
T Consensus       470 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~  515 (517)
T 3r44_A          470 QIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV  515 (517)
T ss_dssp             HHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred             HHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999998864

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=4.9e-45  Score=307.42  Aligned_cols=203  Identities=38%  Similarity=0.724  Sum_probs=146.9

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc--cC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII--DK   78 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~--~~   78 (206)
                      .||+||++.+++..... ......++|+|+++++++|+|+++++++|.|+.|||+|+||+++.||+++++.++..|  +.
T Consensus       334 ~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~  412 (549)
T 3g7s_A          334 IWGMTEACPMVTTNPPL-RLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDE  412 (549)
T ss_dssp             EEECGGGSSEEEECCGG-GGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECT
T ss_pred             eEeccccchhhhcCCcc-ccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccC
Confidence            39999999887665432 2356788999999999999998999999999999999999999999999999998776  24


Q ss_pred             CC--eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC--
Q 043808           79 EG--WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN--  154 (206)
Q Consensus        79 ~~--~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--  154 (206)
                      ++  ||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.+++++++.+.  
T Consensus       413 ~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~  492 (549)
T 3g7s_A          413 KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR  492 (549)
T ss_dssp             TCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTT
T ss_pred             CCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCcc
Confidence            55  99999999999999999999999999999999999999999999999999999999998888999999998776  


Q ss_pred             CCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          155 SSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       155 ~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ...+.++|+++++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus       493 ~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~  542 (549)
T 3g7s_A          493 GKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAE  542 (549)
T ss_dssp             TSCCHHHHHHHHHTTCC-----CCCCEEEECC------------------
T ss_pred             CcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhc
Confidence            56778999999999999999999999999999999999999999998765

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=3e-44  Score=304.34  Aligned_cols=201  Identities=31%  Similarity=0.491  Sum_probs=164.3

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEc-----CCCCcccCCChhhcccc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG-----PILMPGYFNNEQATKLI   75 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~-----~~~~~~y~~~~~~~~~~   75 (206)
                      +||+||++.+++....  ....++++|+|+|+++++|+| ++++++|.|+.|||+|++     +.++.||+++++.+++.
T Consensus       372 ~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~  448 (580)
T 3etc_A          372 GFGQTETVVTIATFPW--MEPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEET  448 (580)
T ss_dssp             EECCTTSSCCEECCTT--SCCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHH
T ss_pred             ccccccccceeecCCC--CCCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhh
Confidence            4999999877665433  245678999999999999999 679999999999999997     78999999999999888


Q ss_pred             ccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCC
Q 043808           76 IDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS  155 (206)
Q Consensus        76 ~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  155 (206)
                      | .++||+|||++++++||+++|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..++.++++|++.+..
T Consensus       449 f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~  527 (580)
T 3etc_A          449 W-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDY  527 (580)
T ss_dssp             E-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred             c-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCC
Confidence            8 589999999999999999999999999999999999999999999999999999999999998999999999988765


Q ss_pred             CCC---HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          156 SLT---KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       156 ~~~---~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      ...   .++|++++++.|+.|+.|+.++++++||+|++||++|++|++++.++
T Consensus       528 ~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~q  580 (580)
T 3etc_A          528 TPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQSQ  580 (580)
T ss_dssp             CCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC---------------------
T ss_pred             CCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhcC
Confidence            544   36899999999999999999999999999999999999999998764

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=6e-44  Score=298.12  Aligned_cols=197  Identities=34%  Similarity=0.584  Sum_probs=163.5

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCC---CCceEEEEEcCCCCcccCCChhhcccccc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPP---NQVGELWVRGPILMPGYFNNEQATKLIID   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~---g~~Gel~i~~~~~~~~y~~~~~~~~~~~~   77 (206)
                      .||+||++.+++....  ......++|+|+++++++|+| +++++++.   |+.|||+|+|++++.||+++++.++..|.
T Consensus       303 ~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~  379 (505)
T 3nyq_A          303 RYGMTETLMNTSVRAD--GEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFT  379 (505)
T ss_dssp             EEEETTTEEEEECCTT--SCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBC
T ss_pred             ccchhhcccccccCCC--CCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhc
Confidence            4999999877665432  345568899999999999999 77888876   89999999999999999999999999898


Q ss_pred             CCCeEecCceEEEecCCcEEEeccc-cceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCC-CC
Q 043808           78 KEGWLHTGDLGYFDEHGQLFIVDRI-KELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP-NS  155 (206)
Q Consensus        78 ~~~~~~TGDl~~~~~~g~l~~~GR~-dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~  155 (206)
                      .++||+|||++++++||.++|+||. ||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..+ ..
T Consensus       380 ~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~  459 (505)
T 3nyq_A          380 EDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA  459 (505)
T ss_dssp             TTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTS
T ss_pred             CCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCC
Confidence            8999999999999999999999998 689999999999999999999999999999999999888899999999875 34


Q ss_pred             CCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHH
Q 043808          156 SLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIA  200 (206)
Q Consensus       156 ~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~  200 (206)
                      ..+.++|+++++++|+.|++|+.++++++||+|++||++|++|++
T Consensus       460 ~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          460 PPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR  504 (505)
T ss_dssp             CCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred             CCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence            567889999999999999999999999999999999999999986

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=4.1e-44  Score=301.20  Aligned_cols=203  Identities=25%  Similarity=0.442  Sum_probs=180.1

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCC-ceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAG-VEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~-~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~   79 (206)
                      +||+||++..++... ........++|+|+++ .+++|+| ++++++|.|+.|||+|+||+++.||+++++.++..|..+
T Consensus       329 ~YG~TE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~  406 (539)
T 1mdb_A          329 VFGMAEGLVNYTRLD-DPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTED  406 (539)
T ss_dssp             EEECTTSCEEECCTT-SCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTT
T ss_pred             EEcCCCCcccccCCC-CcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCC
Confidence            499999764433221 1112334689999976 4799999 789999999999999999999999999999998888789


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK  159 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (206)
                      +||+|||++++++||+++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++... ...+.
T Consensus       407 g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~  485 (539)
T 1mdb_A          407 GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKA  485 (539)
T ss_dssp             SCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCH
T ss_pred             CCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CCCCH
Confidence            99999999999999999999999999999999999999999999999999999999998888889999998763 45678


Q ss_pred             HHHHHHHHHh-ccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHccC
Q 043808          160 EDVQKFVVKQ-VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI  206 (206)
Q Consensus       160 ~~l~~~~~~~-l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~~  206 (206)
                      ++++++++++ |+.|++|..++++++||+|++||++|++|++++.++|
T Consensus       486 ~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i  533 (539)
T 1mdb_A          486 AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL  533 (539)
T ss_dssp             HHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHH
Confidence            8999999998 9999999999999999999999999999999988754

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=2.1e-43  Score=302.83  Aligned_cols=204  Identities=27%  Similarity=0.385  Sum_probs=182.6

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEc--CCCCcccCCChhhccccc-c
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRG--PILMPGYFNNEQATKLII-D   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~--~~~~~~y~~~~~~~~~~~-~   77 (206)
                      .||+||++.+++...........+++|+|+++++++|+| ++++++|.|+.|||+|++  |+++.||+++++.+...+ .
T Consensus       412 ~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~  490 (652)
T 1pg4_A          412 TWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFS  490 (652)
T ss_dssp             EBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHS
T ss_pred             cccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhh
Confidence            499999998776554322345678999999999999999 789999999999999999  689999999998775544 2


Q ss_pred             -CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCC
Q 043808           78 -KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS  156 (206)
Q Consensus        78 -~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  156 (206)
                       .++||+|||++++++||.++|+||.||+||++|++|++.+||+.|.++|.|.+++|++.+++..++.++++|++.++..
T Consensus       491 ~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~  570 (652)
T 1pg4_A          491 TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE  570 (652)
T ss_dssp             SSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred             cCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC
Confidence             3789999999999999999999999999999999999999999999999999999999998888899999999887655


Q ss_pred             CC---HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          157 LT---KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       157 ~~---~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      .+   .++|++++++.|+.++.|..++++++||+|++||++|++|++++..+
T Consensus       571 ~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~  622 (652)
T 1pg4_A          571 PSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD  622 (652)
T ss_dssp             CCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence            44   47899999999999999999999999999999999999999998764

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=7.6e-43  Score=291.77  Aligned_cols=202  Identities=25%  Similarity=0.342  Sum_probs=178.6

Q ss_pred             CcccccCccceeccCCcc---CCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc-
Q 043808            1 GYGMTETCGVVTVENPLL---GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII-   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~---~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~-   76 (206)
                      +||+||++.+++......   ......++|+|+|+++++|+| ++++++|.|+.|||+|+||+++.||+++++.++..| 
T Consensus       292 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~  370 (511)
T 3e7w_A          292 TYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFF  370 (511)
T ss_dssp             CCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEE
T ss_pred             CcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhc
Confidence            599999998776442211   233456799999999999999 779999999999999999999999999999887766 


Q ss_pred             --cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC
Q 043808           77 --DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN  154 (206)
Q Consensus        77 --~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  154 (206)
                        ++..||+|||++++ +||.++|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..++.++++++..+.
T Consensus       371 ~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~  449 (511)
T 3e7w_A          371 SHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEH  449 (511)
T ss_dssp             ESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCC
T ss_pred             CCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccc
Confidence              23338999999999 699999999999999999999999999999999999999999999888888899999998766


Q ss_pred             CCCC----HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          155 SSLT----KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       155 ~~~~----~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ....    .++++++++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus       450 ~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~  503 (511)
T 3e7w_A          450 EFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLV  503 (511)
T ss_dssp             CCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhh
Confidence            5444    3678899999999999999999999999999999999999999875

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=4.4e-43  Score=292.75  Aligned_cols=197  Identities=27%  Similarity=0.418  Sum_probs=179.0

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCC---CCCCCCCceEEEEE-cCCCCcccCCChhhccccc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTL---KPLPPNQVGELWVR-GPILMPGYFNNEQATKLII   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~---~~~~~g~~Gel~i~-~~~~~~~y~~~~~~~~~~~   76 (206)
                      .||+||++ ++....    ....+++|+|+++++++++| +.+   +++|.|+.|||+++ ++.++.||+++++.+...|
T Consensus       303 ~YG~TE~~-~~~~~~----~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f  376 (504)
T 1t5h_X          303 IYGTTEAM-NSLYMR----QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL  376 (504)
T ss_dssp             EEEETTTE-EEEEEE----SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE
T ss_pred             eecccccc-cccccc----CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh
Confidence            49999993 332221    34567899999999999999 445   89999999999999 8999999999999998888


Q ss_pred             cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCC
Q 043808           77 DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS  156 (206)
Q Consensus        77 ~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  156 (206)
                       .++||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++|++.+...
T Consensus       377 -~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~  455 (504)
T 1t5h_X          377 -QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGET  455 (504)
T ss_dssp             -ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCC
T ss_pred             -cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcC
Confidence             6899999999999999999999999999999999999999999999999999999999999888899999999887767


Q ss_pred             CCHHHHHHHHHH-hccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          157 LTKEDVQKFVVK-QVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       157 ~~~~~l~~~~~~-~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      .+.+++++++++ +|+.|++|+.++++++||+|++||++|++|++++++
T Consensus       456 ~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~s  504 (504)
T 1t5h_X          456 LSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVSS  504 (504)
T ss_dssp             CCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC-
T ss_pred             cCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhcC
Confidence            788999999998 899999999999999999999999999999998753

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1e-44  Score=305.55  Aligned_cols=203  Identities=46%  Similarity=0.796  Sum_probs=89.0

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      +||+||++++++....  .....+++|+|+|+++++|+|++++++++.|+.|||+|+||+++.||+++++.+...|+.++
T Consensus       339 ~YG~TE~~~~~~~~~~--~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g  416 (550)
T 3rix_A          339 GYGLTETTSAILITPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDG  416 (550)
T ss_dssp             EEECGGGSSEEEECCT--TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTS
T ss_pred             ccCcCccccceecCCC--CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCC
Confidence            4999999988766543  24567899999999999999988999999999999999999999999999999998888899


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++|+..+....+.+
T Consensus       417 ~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~  496 (550)
T 3rix_A          417 WLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEK  496 (550)
T ss_dssp             CEEEEEEEEECTTCCEEEC-------------------------------------------------------------
T ss_pred             CeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999998888999999998877777788


Q ss_pred             HHHHHHHHhccccCcee-EEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          161 DVQKFVVKQVARYKRLR-NVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~-~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      ++++++.++++.++.|. .++++++||+|++||++|++|++++.+.
T Consensus       497 ~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  542 (550)
T 3rix_A          497 EIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKA  542 (550)
T ss_dssp             ----------------------------------------------
T ss_pred             HHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhh
Confidence            99999999999886665 6899999999999999999999998653

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=2.7e-43  Score=297.63  Aligned_cols=198  Identities=25%  Similarity=0.321  Sum_probs=177.0

Q ss_pred             CcccccCccceeccCCcc-CCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc--
Q 043808            1 GYGMTETCGVVTVENPLL-GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID--   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~--   77 (206)
                      +||+||++.+++...... ......++|+|+++++++|+| ++++++|.|+.|||+|+||+++.||+++++.++..|.  
T Consensus       322 ~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~  400 (563)
T 1amu_A          322 AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDN  400 (563)
T ss_dssp             EECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEEC
T ss_pred             EECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccC
Confidence            499999988776543221 223567899999999999999 7899999999999999999999999999998876662  


Q ss_pred             ----CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCC
Q 043808           78 ----KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP  153 (206)
Q Consensus        78 ----~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  153 (206)
                          +++||+|||++++++||+++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.++...++.++++++...
T Consensus       401 ~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~  480 (563)
T 1amu_A          401 PFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK  480 (563)
T ss_dssp             SSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS
T ss_pred             CCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC
Confidence                3469999999999999999999999999999999999999999999999999999999998888888999998753


Q ss_pred             CCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHH
Q 043808          154 NSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAK  201 (206)
Q Consensus       154 ~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~  201 (206)
                        ..+.++|++++++.|+.|++|..++++++||+|++||++|++|++.
T Consensus       481 --~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~  526 (563)
T 1amu_A          481 --HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEP  526 (563)
T ss_dssp             --CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCC
T ss_pred             --CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCc
Confidence              4567899999999999999999999999999999999999998764

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=1.6e-43  Score=296.37  Aligned_cols=204  Identities=23%  Similarity=0.330  Sum_probs=170.6

Q ss_pred             CcccccCccceeccCCcc---CCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc-
Q 043808            1 GYGMTETCGVVTVENPLL---GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII-   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~---~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~-   76 (206)
                      +||+||++.+++......   ......++|+|+|++.++|+| +++++++.|+.|||+|+||+++.||+++++.++..| 
T Consensus       296 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~  374 (521)
T 3l8c_A          296 AYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFF  374 (521)
T ss_dssp             EECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEE
T ss_pred             CcCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCc
Confidence            499999998776542211   123456899999999999999 789999999999999999999999999999988766 


Q ss_pred             --cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCC-CCCceeEEEEEeCC
Q 043808           77 --DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDP-EAGEVPIAYVVRSP  153 (206)
Q Consensus        77 --~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~-~~~~~~~~~v~~~~  153 (206)
                        ++++||+|||+++++++|.+++.||.||+||++|++|+|.+||+.|.++|.|.++++++..+. ..++.++++++..+
T Consensus       375 ~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~  454 (521)
T 3l8c_A          375 TFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKD  454 (521)
T ss_dssp             EETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECT
T ss_pred             CCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecC
Confidence              567899999999999999999999999999999999999999999999999999999988654 34578899998876


Q ss_pred             CCCCC-------HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          154 NSSLT-------KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       154 ~~~~~-------~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      .....       .++++++++++|+.++.|..++++++||+|++||++|++|+++++++
T Consensus       455 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~  513 (521)
T 3l8c_A          455 GVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNR  513 (521)
T ss_dssp             TSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC--
T ss_pred             ccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcC
Confidence            54321       46889999999999999999999999999999999999999998653

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=6.1e-43  Score=295.82  Aligned_cols=200  Identities=32%  Similarity=0.490  Sum_probs=179.7

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEE-----cCCCCcccCCChhhcccc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR-----GPILMPGYFNNEQATKLI   75 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~-----~~~~~~~y~~~~~~~~~~   75 (206)
                      +||+||++.+++....  .....+++|+|+++++++|+| ++++++|.|+.|||+|+     |++++.||+++++.+...
T Consensus       353 ~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~  429 (570)
T 3c5e_A          353 SYGQTETGLTCMVSKT--MKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAAN  429 (570)
T ss_dssp             EEEETTTEEEEECCTT--SCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHT
T ss_pred             ccchhhcccceecCcc--cccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhh
Confidence            4999999977654432  234678999999999999999 77999999999999999     999999999999999888


Q ss_pred             ccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCC
Q 043808           76 IDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS  155 (206)
Q Consensus        76 ~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  155 (206)
                      | .++||+|||+++++++|.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++|++.+..
T Consensus       430 f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~  508 (570)
T 3c5e_A          430 I-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQF  508 (570)
T ss_dssp             E-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGG
T ss_pred             h-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcc
Confidence            7 579999999999999999999999999999999999999999999999999999999999888888999999886543


Q ss_pred             C--C---CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          156 S--L---TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       156 ~--~---~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      .  .   ..++|++++++.|+.|++|..++++++||+|++||++|++|++++.+
T Consensus       509 ~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~  562 (570)
T 3c5e_A          509 LSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK  562 (570)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC
T ss_pred             cCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHh
Confidence            1  1   24689999999999999999999999999999999999999998754

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=9.5e-43  Score=291.21  Aligned_cols=202  Identities=27%  Similarity=0.367  Sum_probs=179.7

Q ss_pred             CcccccCccceeccCCcc---CCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc-
Q 043808            1 GYGMTETCGVVTVENPLL---GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII-   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~---~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~-   76 (206)
                      .||+||++.+++......   ......++|+|++++.++++| ++++++|.|+.|||+|+||+++.||+++++.++..| 
T Consensus       293 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~  371 (512)
T 3fce_A          293 TYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFT  371 (512)
T ss_dssp             EECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEE
T ss_pred             CcccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccc
Confidence            499999998776443211   123567899999999999999 889999999999999999999999999999887766 


Q ss_pred             --cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC
Q 043808           77 --DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN  154 (206)
Q Consensus        77 --~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  154 (206)
                        ++++||+|||++++ +||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.++...++.++++++..+.
T Consensus       372 ~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~  450 (512)
T 3fce_A          372 MIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH  450 (512)
T ss_dssp             EETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSC
T ss_pred             cCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCc
Confidence              56789999999999 899999999999999999999999999999999999999999999888888889999988765


Q ss_pred             CCCCH----HHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          155 SSLTK----EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       155 ~~~~~----~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      .....    +++++++++.|+.|+.|..++++++||+|++||++|++|++.+.+
T Consensus       451 ~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~  504 (512)
T 3fce_A          451 SFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTA  504 (512)
T ss_dssp             CCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC
T ss_pred             cccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhh
Confidence            44432    578899999999999999999999999999999999999999875

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=1.5e-44  Score=301.93  Aligned_cols=199  Identities=41%  Similarity=0.667  Sum_probs=86.9

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++.+++.....   ....++|+|+++++++|+| ++++++|.|+.|||+|+|++++.||+++++.+...| .++
T Consensus       301 ~YG~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g  375 (509)
T 3ivr_A          301 TFGQSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNG  375 (509)
T ss_dssp             EEEEGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGG
T ss_pred             ccCccccccccccCccc---cCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcC
Confidence            49999999887655332   2345599999999999999 679999999999999999999999999999998888 589


Q ss_pred             eEecCceEEEecCCcEEEeccc--cceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCC
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRI--KELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLT  158 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~--dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  158 (206)
                      ||+|||+++++++|+++|+||.  +|+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..+....+
T Consensus       376 ~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~  455 (509)
T 3ivr_A          376 WHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIA  455 (509)
T ss_dssp             SEEEEEEEEECTTSCEEEEEEC----------------------------------------------------------
T ss_pred             CcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCC
Confidence            9999999999999999999999  89999999999999999999999999999999999988889999999988777777


Q ss_pred             HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          159 KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       159 ~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      .+++++++++.|+.|++|..++++++||+|++||++|++|++++++
T Consensus       456 ~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~  501 (509)
T 3ivr_A          456 ADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQ  501 (509)
T ss_dssp             ----------------------------------------------
T ss_pred             HHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhh
Confidence            8899999999999999999999999999999999999999998875

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=1.6e-42  Score=295.73  Aligned_cols=200  Identities=28%  Similarity=0.430  Sum_probs=180.0

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeec-CCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLV-AGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~   79 (206)
                      .||+||++..++.... .......++|+|+ +++.++|+| ++++++|.|+.|||+|+|++++.||+++++.++..|..+
T Consensus       333 ~YG~tE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~  410 (617)
T 3rg2_A          333 VFGMAEGLVNYTRLDD-SAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDAN  410 (617)
T ss_dssp             EEEETTEEEEECCTTS-CHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTT
T ss_pred             EeccCcceeecccCCC-cccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCC
Confidence            4999999866543322 1223345789998 788999999 889999999999999999999999999999999999889


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK  159 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (206)
                      +||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..+  ..+.
T Consensus       411 ~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~~~~  488 (617)
T 3rg2_A          411 GFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--PLRA  488 (617)
T ss_dssp             SCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCCH
T ss_pred             CceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--CCCH
Confidence            99999999999999999999999999999999999999999999999999999999988888889999998765  5667


Q ss_pred             HHHHHHHHH-hccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          160 EDVQKFVVK-QVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       160 ~~l~~~~~~-~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      .++++++.+ .|+.|++|..++++++||+|++||++|++|++++.+
T Consensus       489 ~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~  534 (617)
T 3rg2_A          489 VQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS  534 (617)
T ss_dssp             HHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence            899999998 699999999999999999999999999999998764

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=8.2e-44  Score=299.53  Aligned_cols=204  Identities=31%  Similarity=0.571  Sum_probs=143.8

Q ss_pred             CcccccCccceeccCCccC---------CCCCCcceeecCCceEEEEeCCCCCCCCC--CCceEEEEEcCCCCcccCCCh
Q 043808            1 GYGMTETCGVVTVENPLLG---------VQNSGSAGRLVAGVEAQIVCVDTLKPLPP--NQVGELWVRGPILMPGYFNNE   69 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~---------~~~~~~~G~p~~~~~~~i~~~~~~~~~~~--g~~Gel~i~~~~~~~~y~~~~   69 (206)
                      +||+||++.+++.......         .....++|+|+|+++++|+| ++++++|.  ++.|||+|+||+++.||++++
T Consensus       323 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p  401 (541)
T 1v25_A          323 GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNE  401 (541)
T ss_dssp             EEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCH
T ss_pred             cccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCCh
Confidence            4999999987765432110         12357899999999999999 77888884  368999999999999999999


Q ss_pred             hhccccccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEE
Q 043808           70 QATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYV  149 (206)
Q Consensus        70 ~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v  149 (206)
                      +.++..|..++||+|||+++++++|.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.+++++
T Consensus       402 ~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~v  481 (541)
T 1v25_A          402 EATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVV  481 (541)
T ss_dssp             HHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC
T ss_pred             hhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEE
Confidence            99998887789999999999999999999999999999999999999999999999999999999999988888899998


Q ss_pred             EeCCCCCCCHHHHHHHHHH-hccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHccC
Q 043808          150 VRSPNSSLTKEDVQKFVVK-QVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI  206 (206)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~~  206 (206)
                      +.. ....+.+++++++.+ .|+.|++|+.++++++||+|++||++|++|++++.+.+
T Consensus       482 v~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  538 (541)
T 1v25_A          482 VPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYY  538 (541)
T ss_dssp             --------------------CCCTTTSCSBC--------------CCTTHHHHSTTSS
T ss_pred             EEC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhh
Confidence            875 334556789999998 89999999999999999999999999999999987754

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.6e-43  Score=315.37  Aligned_cols=205  Identities=52%  Similarity=0.821  Sum_probs=93.4

Q ss_pred             CcccccCccceeccC---CccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc
Q 043808            1 GYGMTETCGVVTVEN---PLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~---~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~   77 (206)
                      .||+||++.+++...   ........+++|+|+++++++|+|+++++++|.|+.|||+|+||+++.||+++|+.++..|+
T Consensus       376 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~  455 (979)
T 3tsy_A          376 GYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETID  455 (979)
T ss_dssp             CEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred             eechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhcc
Confidence            599999998775542   12224456789999999999999988899999999999999999999999999999999898


Q ss_pred             CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCC
Q 043808           78 KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL  157 (206)
Q Consensus        78 ~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  157 (206)
                      .++||+|||+++++++|.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..+....
T Consensus       456 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~  535 (979)
T 3tsy_A          456 KDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSEL  535 (979)
T ss_dssp             TTSCEEEEEEEEECTTSCEEEEEESCC-----------------------------------------------------
T ss_pred             CCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999988888999999988777677


Q ss_pred             CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          158 TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       158 ~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      +.++++++++++|+.|+.|..++++++||+|++||++|++|++++.+.
T Consensus       536 ~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  583 (979)
T 3tsy_A          536 SEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANG  583 (979)
T ss_dssp             ------------------------------------------------
T ss_pred             CHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhh
Confidence            788999999999999999999999999999999999999999988764

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=2.7e-42  Score=296.27  Aligned_cols=204  Identities=25%  Similarity=0.360  Sum_probs=177.7

Q ss_pred             CcccccCccceeccCC-ccCCCCCCcceeecCCceEEEEeCCCCCCCCC-CCceEEEEEc--CCCCcccCCChhhccccc
Q 043808            1 GYGMTETCGVVTVENP-LLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPP-NQVGELWVRG--PILMPGYFNNEQATKLII   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~-~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~-g~~Gel~i~~--~~~~~~y~~~~~~~~~~~   76 (206)
                      .||+||++.+++.... ......++++|+|+++++++|+|++++++++. |+.|||+|++  |+++.||+++++.+...+
T Consensus       418 ~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~  497 (663)
T 1ry2_A          418 TYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTY  497 (663)
T ss_dssp             CBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHH
T ss_pred             eECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhh
Confidence            5999999987765433 22345678999999999999999548999988 9999999999  589999999998876554


Q ss_pred             c--CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC
Q 043808           77 D--KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN  154 (206)
Q Consensus        77 ~--~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  154 (206)
                      .  .+|||+|||++++++||+++|+||.||+||++|++|++.+||+.|.++|.|.+++|++.+++..++.++++|++.+.
T Consensus       498 ~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~  577 (663)
T 1ry2_A          498 LNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNK  577 (663)
T ss_dssp             TSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC--
T ss_pred             hcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCC
Confidence            2  37899999999999999999999999999999999999999999999999999999999988888999999998765


Q ss_pred             CC---C-------CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          155 SS---L-------TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       155 ~~---~-------~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ..   .       ..++|++++++.|++++.|..++++++||+|++||++|+.|++++..
T Consensus       578 ~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~  637 (663)
T 1ry2_A          578 SSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG  637 (663)
T ss_dssp             ----------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred             CccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcC
Confidence            43   1       25789999999999999999999999999999999999999987754

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1e-43  Score=299.04  Aligned_cols=201  Identities=26%  Similarity=0.456  Sum_probs=88.3

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeec-CCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLV-AGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~   79 (206)
                      .||+||++..++.... .......++|+|+ +++.++|+| ++++++|.|+.|||+|+||+++.||+++++.++..|+.+
T Consensus       338 ~YG~TE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~  415 (544)
T 3o83_A          338 VFGMAEGLVNYTRLDD-SDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDED  415 (544)
T ss_dssp             EEECTTSCEEECCTTS-CHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTT
T ss_pred             eeccccccceeecCCC-chhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCC
Confidence            4999999865543322 1223446889996 899999999 889999999999999999999999999999999999889


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK  159 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (206)
                      +||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..+ ...+.
T Consensus       416 g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~  494 (544)
T 3o83_A          416 NYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PELKA  494 (544)
T ss_dssp             CCEEEEEEEEECTTSCEEEEEEEC--------------------------------------------------------
T ss_pred             CCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999888899999998765 34566


Q ss_pred             HHHHHHHHH-hccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          160 EDVQKFVVK-QVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       160 ~~l~~~~~~-~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      .++++++.+ .|+.|++|..++++++||+|++||++|++|++++.+
T Consensus       495 ~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  540 (544)
T 3o83_A          495 VVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT  540 (544)
T ss_dssp             ----------------------------------------------
T ss_pred             HHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhh
Confidence            788899988 799999999999999999999999999999998865

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=1.4e-43  Score=299.75  Aligned_cols=201  Identities=29%  Similarity=0.403  Sum_probs=85.7

Q ss_pred             CcccccCccceeccCCc--cCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhcccccc-
Q 043808            1 GYGMTETCGVVTVENPL--LGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIID-   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~-   77 (206)
                      +||+||++++++.....  .......++|+|+++++++|+| +++++++.|+.|||+|+||+++.||+++++.++..|. 
T Consensus       358 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~  436 (570)
T 4gr5_A          358 GYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVA  436 (570)
T ss_dssp             EECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEE
T ss_pred             eechhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhccccc
Confidence            49999998877654321  1233456799999999999999 7899999999999999999999999999998877663 


Q ss_pred             -------CCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEE
Q 043808           78 -------KEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV  150 (206)
Q Consensus        78 -------~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~  150 (206)
                             +.+||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..++.++++++
T Consensus       437 ~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv  516 (570)
T 4gr5_A          437 DPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVV  516 (570)
T ss_dssp             CTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-------------------------------------------------
T ss_pred             CCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEE
Confidence                   2479999999999999999999999999999999999999999999999999999999988888888999988


Q ss_pred             eCCC-CCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHH
Q 043808          151 RSPN-SSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKL  202 (206)
Q Consensus       151 ~~~~-~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~  202 (206)
                      .... ...+.++|+++++++|+.|+.|..++++++||+|++||++|++|++.-
T Consensus       517 ~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~g  569 (570)
T 4gr5_A          517 AERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGSG  569 (570)
T ss_dssp             -----------------------------------------------------
T ss_pred             ecCCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhccC
Confidence            7543 345678999999999999999999999999999999999999998753

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=9.9e-42  Score=286.08  Aligned_cols=195  Identities=29%  Similarity=0.455  Sum_probs=170.2

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      +||+||++.+++.....  ....+++|+|+++++++|+| ++++++|.|+.|||+|+|++++.||+++++.+...| .++
T Consensus       331 ~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~  406 (529)
T 2v7b_A          331 GIGSTEMLHIFLSNRAG--AVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGE  406 (529)
T ss_dssp             EEECTTTSSEEEECCTT--CCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETT
T ss_pred             eEchhhcCceeeccccC--CCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hcC
Confidence            49999997766544322  25668899999999999999 789999999999999999999999999999998877 578


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCC---
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL---  157 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---  157 (206)
                      ||+|||+++++++|.++|+||.||+||++|++|+|.+||+.+.++|+|.+++|++. +...++.++++++.......   
T Consensus       407 ~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~  485 (529)
T 2v7b_A          407 WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEI  485 (529)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHH
T ss_pred             CcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchh
Confidence            99999999999999999999999999999999999999999999999999999998 55566788899988655421   


Q ss_pred             CHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHH
Q 043808          158 TKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIA  200 (206)
Q Consensus       158 ~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~  200 (206)
                      ..+++++++++.|+.|++|..++++++||+|++||++|++|++
T Consensus       486 ~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~  528 (529)
T 2v7b_A          486 LAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE  528 (529)
T ss_dssp             HHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred             HHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence            2468999999999999999999999999999999999999985

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=8.8e-42  Score=284.62  Aligned_cols=194  Identities=30%  Similarity=0.519  Sum_probs=157.0

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||++..++............++|+|+++++++++|++      .|..|||+|+|+.++.||+++++.+.. + .++
T Consensus       304 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g  375 (501)
T 3ipl_A          304 SFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENG  375 (501)
T ss_dssp             EEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETT
T ss_pred             cccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCC
Confidence            49999998766554433334567889999999999999954      456799999999999999999988876 4 689


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.++|+||.||+||++|++|+|.+||+.+.++|+|.+++|++.+++..++.++++++..  ...+.+
T Consensus       376 ~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~~  453 (501)
T 3ipl_A          376 YFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKA  453 (501)
T ss_dssp             EEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCHH
T ss_pred             ceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCHH
Confidence            999999999999999999999999999999999999999999999999999999999888888888888864  456789


Q ss_pred             HHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          161 DVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       161 ~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      +|+++++++|+.|++|..++++++||+|++||++|++|++...+
T Consensus       454 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~  497 (501)
T 3ipl_A          454 QLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH  497 (501)
T ss_dssp             HHHHHHHHHSCGGGSCSEEEECSSCC------------------
T ss_pred             HHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence            99999999999999999999999999999999999999987664

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=2.5e-41  Score=308.18  Aligned_cols=197  Identities=28%  Similarity=0.355  Sum_probs=177.0

Q ss_pred             CcccccCccceeccCCcc--CCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc--
Q 043808            1 GYGMTETCGVVTVENPLL--GVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII--   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~--   76 (206)
                      +||+||++.+++......  ......++|+|++++.++|+| ++++++|.|..|||+|+|+.+++||+++++.+++.|  
T Consensus       752 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~  830 (1304)
T 2vsq_A          752 CYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIE  830 (1304)
T ss_dssp             EECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEE
T ss_pred             eEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhcc
Confidence            499999998876553221  233457899999999999999 789999999999999999999999999999987776  


Q ss_pred             ----cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeC
Q 043808           77 ----DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRS  152 (206)
Q Consensus        77 ----~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  152 (206)
                          ++.+||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.++...+..++++++..
T Consensus       831 ~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~  910 (1304)
T 2vsq_A          831 NPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNR  910 (1304)
T ss_dssp             CTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECS
T ss_pred             CCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCC
Confidence                2356999999999999999999999999999999999999999999999999999999998887888999999865


Q ss_pred             CCCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHH
Q 043808          153 PNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIA  200 (206)
Q Consensus       153 ~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~  200 (206)
                      .  ..+.+++++++++.|+.|++|..++++++||+|++||++|++|.+
T Consensus       911 ~--~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~  956 (1304)
T 2vsq_A          911 T--QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPK  956 (1304)
T ss_dssp             S--SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCC
T ss_pred             C--CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCC
Confidence            4  567789999999999999999999999999999999999998754

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=2.9e-41  Score=287.94  Aligned_cols=196  Identities=22%  Similarity=0.339  Sum_probs=161.0

Q ss_pred             CcccccCccceeccCC--ccCCCCCCcceeecCCceEEEEeCCCCCC-CCCCCceEEEEEcCCCCcccCCChhhcccccc
Q 043808            1 GYGMTETCGVVTVENP--LLGVQNSGSAGRLVAGVEAQIVCVDTLKP-LPPNQVGELWVRGPILMPGYFNNEQATKLIID   77 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~--~~~~~~~~~~G~p~~~~~~~i~~~~~~~~-~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~   77 (206)
                      +||+||++.+++....  ........++|+|++++.++|+| +++++ +|.|..|||+|+|++++.||+++++.++..|.
T Consensus       308 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~  386 (620)
T 4dg8_A          308 GYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLD-EHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFV  386 (620)
T ss_dssp             EECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEEC-TTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEE
T ss_pred             eEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEEC-ccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhc
Confidence            4999999987765422  22234567899999999999999 55555 89999999999999999999999999987773


Q ss_pred             CC-------CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEE
Q 043808           78 KE-------GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV  150 (206)
Q Consensus        78 ~~-------~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~  150 (206)
                      .+       +||+|||++++++||.++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.++...+..+++++ 
T Consensus       387 ~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~-  465 (620)
T 4dg8_A          387 ELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWT-  465 (620)
T ss_dssp             EEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEE-
T ss_pred             cCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEe-
Confidence            32       7999999999999999999999999999999999999999999999999999999887764444444443 


Q ss_pred             eCCCCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          151 RSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ...      +.+.+++.+.|+.|++|..++++++||+|++||++|++|++++.+
T Consensus       466 ~~~------~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~  513 (620)
T 4dg8_A          466 GKA------DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE  513 (620)
T ss_dssp             ECT------TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred             cCh------HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence            321      123456778899999999999999999999999999999988754

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=9.6e-42  Score=288.03  Aligned_cols=203  Identities=19%  Similarity=0.272  Sum_probs=87.5

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc-cCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII-DKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~-~~~   79 (206)
                      +||+||++..++..... ......++|+|++++.++++|+++++++|.|+.|||+|+|++++.||+++++.+...+ +++
T Consensus       325 ~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~  403 (562)
T 3ite_A          325 VYGPTEVTIGCSAGRIL-PDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGR  403 (562)
T ss_dssp             EECCGGGCSCSEEEECC-TTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTE
T ss_pred             eeccchheeeeeeeeec-CCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccCCCC
Confidence            49999998877655332 2345678999999999999998889999999999999999999999999998876554 344


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcC-CCcceeEEEeecCCCCCceeEEEEEeCCCCCC-
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSH-PEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL-  157 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-  157 (206)
                      +||+|||++++++||+++|+||.||+||++|++|+|.+||+.|.++ +.+.+++++..+++..++..+++++....... 
T Consensus       404 ~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~  483 (562)
T 3ite_A          404 KMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVR  483 (562)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEC---------------------------------------------------------
T ss_pred             EEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccccc
Confidence            5999999999999999999999999999999999999999999998 77888888888877666665555544332221 


Q ss_pred             ------------CHHHHHHHHHHhccccCceeEEEEeCCcCCC-CCCcccHHHHHHHHHc
Q 043808          158 ------------TKEDVQKFVVKQVARYKRLRNVTFTNSIPKT-TSGKILRRELIAKLRS  204 (206)
Q Consensus       158 ------------~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t-~~GKv~r~~l~~~~~~  204 (206)
                                  ..++|+++++++|+.|++|+.++++++||+| ++||++|++|++++++
T Consensus       484 ~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~  543 (562)
T 3ite_A          484 GELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHT  543 (562)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhc
Confidence                        2348999999999999999999999999998 8999999999998864

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=2.6e-39  Score=274.45  Aligned_cols=200  Identities=26%  Similarity=0.359  Sum_probs=166.6

Q ss_pred             CcccccCccceeccCCc-------------------------cCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEE
Q 043808            1 GYGMTETCGVVTVENPL-------------------------LGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELW   55 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~-------------------------~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~   55 (206)
                      +||+||++.+++.....                         .......++|+|+++  ++|+|++++++++.|+.|||+
T Consensus       326 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~  403 (590)
T 3kxw_A          326 CYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIW  403 (590)
T ss_dssp             EEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEE
T ss_pred             ccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEE
Confidence            49999999887654221                         112234688999998  788997779999999999999


Q ss_pred             EEcCCCCcccCCChhhccccccC--------CCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHH-hcCC
Q 043808           56 VRGPILMPGYFNNEQATKLIIDK--------EGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVL-VSHP  126 (206)
Q Consensus        56 i~~~~~~~~y~~~~~~~~~~~~~--------~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i-~~~~  126 (206)
                      |+||+++.||+++++.++..|..        .+||+|||+++++ +|.++|+||.||+||++|++|+|.+||+.+ ..+|
T Consensus       404 v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~  482 (590)
T 3kxw_A          404 VQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPL  482 (590)
T ss_dssp             EESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGG
T ss_pred             EeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCc
Confidence            99999999999999999877632        3399999999998 999999999999999999999999999999 7789


Q ss_pred             Ccc--eeEEEeecCCCCCceeEEEEEeCCCC--CCCHHHHHHHHHHhccc-cCcee-EEEEe--CCcCCCCCCcccHHHH
Q 043808          127 EIL--DAVVIPFPDPEAGEVPIAYVVRSPNS--SLTKEDVQKFVVKQVAR-YKRLR-NVTFT--NSIPKTTSGKILRREL  198 (206)
Q Consensus       127 ~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~~~l~~-~~~p~-~~~~v--~~~P~t~~GKv~r~~l  198 (206)
                      .|.  +++|++.+++. ++.++++++..+..  ..+.+++.+++++.++. ++.|. .++++  ++||+|++||++|++|
T Consensus       483 ~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L  561 (590)
T 3kxw_A          483 HHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFC  561 (590)
T ss_dssp             GGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHH
T ss_pred             cccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHH
Confidence            998  78888887765 67788888876553  34567889999998885 77775 44444  8999999999999999


Q ss_pred             HHHHHc
Q 043808          199 IAKLRS  204 (206)
Q Consensus       199 ~~~~~~  204 (206)
                      ++++.+
T Consensus       562 ~~~~~~  567 (590)
T 3kxw_A          562 RKHLLD  567 (590)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            999875

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=5.3e-35  Score=234.39  Aligned_cols=174  Identities=20%  Similarity=0.292  Sum_probs=145.0

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      +||+||+++.++.....  ....+.+|.+.|++.+.+.+           .|||+++++..                .++
T Consensus       178 ~YG~TEt~~~~~~~~~~--~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g  228 (358)
T 4gs5_A          178 SYGMTETVSHVALKALN--GPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQ  228 (358)
T ss_dssp             EEECGGGSSEEEEEECS--STTCCSCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTC
T ss_pred             ccccccccceeeccccc--ccccceeeccCCCeEEEecC-----------cCceEEecccc----------------cCc
Confidence            49999999877665432  34567899999999988733           58999987532                578


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHh---cCCCcceeEEE-eecCCCCCceeEEEEEeCCCCC
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLV---SHPEILDAVVI-PFPDPEAGEVPIAYVVRSPNSS  156 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~---~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~  156 (206)
                      ||+|||+++++++| ++|+||.||+||++|++|+|.+||+.|.   ++|.|.+++|+ ..+++..++.++++++... ..
T Consensus       229 ~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~-~~  306 (358)
T 4gs5_A          229 TVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAM-PE  306 (358)
T ss_dssp             CEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCC-CH
T ss_pred             ceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCC-CC
Confidence            99999999999888 7778999999999999999999998774   57899998776 5667777888888887543 34


Q ss_pred             CCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHcc
Q 043808          157 LTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSK  205 (206)
Q Consensus       157 ~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~  205 (206)
                      ...++|+++++++|+.|++|+.++++++||+|++||++|++|++++++.
T Consensus       307 ~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~  355 (358)
T 4gs5_A          307 ALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS  355 (358)
T ss_dssp             HHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred             cCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence            4567899999999999999999999999999999999999999998764

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=2e-32  Score=224.60  Aligned_cols=177  Identities=21%  Similarity=0.253  Sum_probs=142.6

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      .||+||+++.++....    ......+.|.+++.++|+|+++++++|.|+.|||+|++.+            ...+ +.+
T Consensus       237 ~YG~TE~~~~~~~~~~----~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~------------~~~~-~~~  299 (436)
T 3qov_A          237 SFGMTEMNGPGVAFEC----QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD------------REMM-PLI  299 (436)
T ss_dssp             EEEEGGGTEEEEEEEC----TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS------------CCSS-CCC
T ss_pred             cCcchhhcCCeeEEec----CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC------------cCCc-eEE
Confidence            4999999655322211    1122367788899999999889999999999999999832            2233 678


Q ss_pred             eEecCceEEEecCC------c---EEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEe
Q 043808           81 WLHTGDLGYFDEHG------Q---LFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVR  151 (206)
Q Consensus        81 ~~~TGDl~~~~~~g------~---l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  151 (206)
                      ||+|||+++++++|      .   ++++||.||+||++|++|+|.+||+.|.++|+|.++++++..++..++.++++|++
T Consensus       300 ~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~  379 (436)
T 3qov_A          300 RYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVEL  379 (436)
T ss_dssp             SEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEE
Confidence            99999999999998      4   69999999999999999999999999999999999999998887778899999998


Q ss_pred             CCCCCCC----HHHHHHHHHHhcccc-CceeEEEEeC--CcCCCCCCcccHH
Q 043808          152 SPNSSLT----KEDVQKFVVKQVARY-KRLRNVTFTN--SIPKTTSGKILRR  196 (206)
Q Consensus       152 ~~~~~~~----~~~l~~~~~~~l~~~-~~p~~~~~v~--~~P~t~~GKv~r~  196 (206)
                      . ....+    .+++.+++++.|+.+ ..|..+.+++  +||+|+ ||++|.
T Consensus       380 ~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~  429 (436)
T 3qov_A          380 S-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV  429 (436)
T ss_dssp             C-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred             c-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence            7 54444    578999999999988 8999999998  999999 999885

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.97  E-value=5.8e-32  Score=222.26  Aligned_cols=181  Identities=20%  Similarity=0.172  Sum_probs=146.2

Q ss_pred             CcccccCccc-eeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808            1 GYGMTETCGV-VTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~-~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~   79 (206)
                      .||+||+++. ++.....    .....+.|.+++.++|+|+++++++|.|+.|||+|++.            +...+ +.
T Consensus       243 ~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p~  305 (443)
T 2y4o_A          243 IYGLSEVMGPGVACECVE----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-PV  305 (443)
T ss_dssp             EEEETTTTEEEEEEECTT----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CC
T ss_pred             ccCchhhcCCeEEeccCC----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-hh
Confidence            4999998443 3332221    11125567789999999988899999999999999973            22233 67


Q ss_pred             CeEecCceEEEecC-CcE-----EEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCC
Q 043808           80 GWLHTGDLGYFDEH-GQL-----FIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP  153 (206)
Q Consensus        80 ~~~~TGDl~~~~~~-g~l-----~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  153 (206)
                      +||+|||+++++++ |++     +++||.||+||++|++|+|.+||+.|.++|+|.++++++.+++..++.++++|+..+
T Consensus       306 ~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~  385 (443)
T 2y4o_A          306 IRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRS  385 (443)
T ss_dssp             SSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECH
T ss_pred             heeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECC
Confidence            89999999999999 986     899999999999999999999999999999999999888877666788889988764


Q ss_pred             --C---CCCCHHHHHHHHHHhcccc-CceeEEEEe--CCcCCCCCCcccHHHH
Q 043808          154 --N---SSLTKEDVQKFVVKQVARY-KRLRNVTFT--NSIPKTTSGKILRREL  198 (206)
Q Consensus       154 --~---~~~~~~~l~~~~~~~l~~~-~~p~~~~~v--~~~P~t~~GKv~r~~l  198 (206)
                        .   ...+.+++++++++.|+.+ ..|..+.++  ++||+|++||++|+..
T Consensus       386 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~  438 (443)
T 2y4o_A          386 EAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVID  438 (443)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEE
T ss_pred             cccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEe
Confidence              2   2234578999999999887 488877777  5999999999998643

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.97  E-value=1.6e-31  Score=219.33  Aligned_cols=179  Identities=19%  Similarity=0.199  Sum_probs=145.8

Q ss_pred             CcccccCccc-eeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCC
Q 043808            1 GYGMTETCGV-VTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~-~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~   79 (206)
                      .||+||+++. ++.....    .....+.|.+++.++|+|+++++++|.|+.|||++++.            +...+ +.
T Consensus       241 ~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~  303 (437)
T 2y27_A          241 IYGLSEVMGPGVASECVE----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PI  303 (437)
T ss_dssp             EEEETTTTEEEEEECCTT----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CC
T ss_pred             cCCchhhcCCeeEEecCC----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hh
Confidence            4999998443 3332221    11125677889999999988899999999999999973            22233 67


Q ss_pred             CeEecCceEEEec-CCcE-----EEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCC
Q 043808           80 GWLHTGDLGYFDE-HGQL-----FIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP  153 (206)
Q Consensus        80 ~~~~TGDl~~~~~-~g~l-----~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  153 (206)
                      +||+|||++++++ +|++     +++||.||+|+++|++|+|.+||+.|.++|+|.++++++.+++..++.++++|++.+
T Consensus       304 ~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~  383 (437)
T 2y27_A          304 IRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCP  383 (437)
T ss_dssp             CSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCT
T ss_pred             heeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECC
Confidence            8999999999999 6985     899999999999999999999999999999999999888877666788999998765


Q ss_pred             CCC---CCHHHHHHHHHHhcccc-CceeEEEEe--CCcCCCCCCcccHHH
Q 043808          154 NSS---LTKEDVQKFVVKQVARY-KRLRNVTFT--NSIPKTTSGKILRRE  197 (206)
Q Consensus       154 ~~~---~~~~~l~~~~~~~l~~~-~~p~~~~~v--~~~P~t~~GKv~r~~  197 (206)
                      ...   .+.+++++++++.|+.+ ..|..+.++  ++||+|+ ||++|+.
T Consensus       384 ~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~  432 (437)
T 2y27_A          384 ETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV  432 (437)
T ss_dssp             TTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred             CccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence            543   33478999999999987 588888888  5999999 9999863

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=99.84  E-value=1.5e-21  Score=161.53  Aligned_cols=99  Identities=28%  Similarity=0.461  Sum_probs=84.1

Q ss_pred             CcccccCccceeccCCccC-----------------------CCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEE
Q 043808            1 GYGMTETCGVVTVENPLLG-----------------------VQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVR   57 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~-----------------------~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~   57 (206)
                      +||+||++.+++.......                       .....++|+|++ ++++|+|+++++++|.|+.|||+|+
T Consensus       348 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~  426 (480)
T 3t5a_A          348 SYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVH  426 (480)
T ss_dssp             EEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEE
T ss_pred             cccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEe
Confidence            4999999988876543211                       123458999999 9999999777899999999999999


Q ss_pred             cCCCCcccCCChhhcccccc-----------CCCeEecCceEEEecCCcEEEecc
Q 043808           58 GPILMPGYFNNEQATKLIID-----------KEGWLHTGDLGYFDEHGQLFIVDR  101 (206)
Q Consensus        58 ~~~~~~~y~~~~~~~~~~~~-----------~~~~~~TGDl~~~~~~g~l~~~GR  101 (206)
                      ||+++.||+++++.+++.|+           +++||+|||+++++ ||.++|+||
T Consensus       427 g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          427 GDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             STTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             CCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            99999999999999987774           46799999999996 999999998

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.70  E-value=1.2e-16  Score=106.42  Aligned_cols=95  Identities=18%  Similarity=0.276  Sum_probs=73.0

Q ss_pred             ccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHHhcccc-Cc
Q 043808          100 DRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK---EDVQKFVVKQVARY-KR  175 (206)
Q Consensus       100 GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~~-~~  175 (206)
                      .|.||+|+++|.|++|.+||+.+.++|++.++++++.+++..++.+.++++..+....+.   .++.+.+.+.+..+ .+
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv   80 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV   80 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence            489999999999999999999999999999999999998888899999998877655443   34555555555432 23


Q ss_pred             eeEEEEe--CCcCCCCCCcccH
Q 043808          176 LRNVTFT--NSIPKTTSGKILR  195 (206)
Q Consensus       176 p~~~~~v--~~~P~t~~GKv~r  195 (206)
                      +..+.++  ++||+| +||++|
T Consensus        81 ~~~v~~v~~~~lPrt-sGKi~R  101 (109)
T 3lax_A           81 TPRVKLVPKGALPKS-EGKAVR  101 (109)
T ss_dssp             CCEEEEECTTCSCCC----CCC
T ss_pred             ccceEEEcCCeecCC-CCCcch
Confidence            4445555  689998 799987

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.10  E-value=8.5e-11  Score=94.02  Aligned_cols=90  Identities=14%  Similarity=0.030  Sum_probs=58.2

Q ss_pred             CcccccCccceeccCCccCCCCCCcceee------cCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRL------VAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKL   74 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p------~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~   74 (206)
                      .||+||+++++....       ..++|+|      +|++.++|+|+++++++|.|+.|||+|++.+            ..
T Consensus       264 ~YG~TE~~~~~~~~~-------~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~------------~~  324 (369)
T 3hgu_A          264 SYGSTSALGVSRSLL-------ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLS------------PW  324 (369)
T ss_dssp             EEEEGGGTEEEEECC-------BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEE------------TT
T ss_pred             ccCchhhhcceeccc-------cccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcC------------cc
Confidence            499999987663221       1157888      9999999999769999999999999998732            11


Q ss_pred             cccCCCeEecCceEEEecC--C-------cEEEeccccceEEECCe
Q 043808           75 IIDKEGWLHTGDLGYFDEH--G-------QLFIVDRIKELIKCNGF  111 (206)
Q Consensus        75 ~~~~~~~~~TGDl~~~~~~--g-------~l~~~GR~dd~i~~~G~  111 (206)
                      .+  -.+|+|||++.+.+.  |       .+..++|.++..++.|.
T Consensus       325 ~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          325 AF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             EE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred             cc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence            11  235899999988653  2       25567888888887774

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.58  E-value=3.5e-07  Score=76.99  Aligned_cols=103  Identities=14%  Similarity=0.109  Sum_probs=70.9

Q ss_pred             CcccccCccceeccCCccCCCCCCc-ceeecCC-ceEEEEeCCCC---------------CCCCCCCceEEEEEcCCCCc
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGS-AGRLVAG-VEAQIVCVDTL---------------KPLPPNQVGELWVRGPILMP   63 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~-~G~p~~~-~~~~i~~~~~~---------------~~~~~g~~Gel~i~~~~~~~   63 (206)
                      .|++||+ .+.. ...  ....+.. ....+|+ ...+.++.++.               ..++.|..+||+|++-+   
T Consensus       335 ~Y~ASEg-~~gi-~~~--p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---  407 (609)
T 4b2g_A          335 MYASSEC-YFGL-NLN--PMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---  407 (609)
T ss_dssp             EEECSSC-EEEE-CSC--TTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---
T ss_pred             cccccce-eeee-ecC--CCCCcccCceeecCCcEEEEEEeccccccccccCCCCccccHhHcCCCCeEEEehhhhh---
Confidence            4899996 2222 221  1111222 2233444 56677764432               34678999999998732   


Q ss_pred             ccCCChhhccccccCCCeEecCceEEEec----CCcEEEeccccceEEECCeEeChHHHHHHHhc
Q 043808           64 GYFNNEQATKLIIDKEGWLHTGDLGYFDE----HGQLFIVDRIKELIKCNGFQVAPAELEGVLVS  124 (206)
Q Consensus        64 ~y~~~~~~~~~~~~~~~~~~TGDl~~~~~----~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~  124 (206)
                      |+|              .|++||+++...    ..++.|.||.++++++.|+++...+||+++..
T Consensus       408 GL~--------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~  458 (609)
T 4b2g_A          408 GLY--------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN  458 (609)
T ss_dssp             SCC--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred             hhh--------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence            233              289999999863    46799999999999999999999999999984

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.47  E-value=2.9e-06  Score=71.20  Aligned_cols=130  Identities=13%  Similarity=0.039  Sum_probs=81.6

Q ss_pred             CcccccCccceeccCCccCCCCCCc-ceeecCC-ceEEEEeCCCC----------CCCCCCCceEEEEEcCCCCcccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGS-AGRLVAG-VEAQIVCVDTL----------KPLPPNQVGELWVRGPILMPGYFNN   68 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~-~G~p~~~-~~~~i~~~~~~----------~~~~~g~~Gel~i~~~~~~~~y~~~   68 (206)
                      .|++||+  ++.+...  ....++. ....+|+ ...+.++.+..          ..++.|+.+||+|++-+   |.|  
T Consensus       335 ~Y~ASEg--~~gi~~~--p~~~~~~~~~~L~p~~~ffEFiP~~~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~--  405 (581)
T 4epl_A          335 DYGSSEG--WIAANVT--PRLSPEEATFAVIPNLGYFEFLPVSETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY--  405 (581)
T ss_dssp             CEEETTE--EEEECCC--TTSCTTTCCEEECTTSCEEEEEEC-------CCCEEGGGCCTTCEEEEEEESTT---SCS--
T ss_pred             ceeccce--eeeeecC--CCCCccccceeecCCcEEEEEEecccccCCCCceeeHHHcCCCCeEEEEEeecc---cee--
Confidence            5899996  2322221  1222221 2334444 45566664322          35678999999998742   222  


Q ss_pred             hhhccccccCCCeEecCceEEEec----CCcEEEeccccceEEECCeEeChHHHHHHHhcC------C--CcceeEEEee
Q 043808           69 EQATKLIIDKEGWLHTGDLGYFDE----HGQLFIVDRIKELIKCNGFQVAPAELEGVLVSH------P--EILDAVVIPF  136 (206)
Q Consensus        69 ~~~~~~~~~~~~~~~TGDl~~~~~----~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~------~--~v~~~~v~~~  136 (206)
                                  .|++||+++...    ..++.|.||.++++++.|+++...+|++++...      .  .+.+..+..-
T Consensus       406 ------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d  473 (581)
T 4epl_A          406 ------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYID  473 (581)
T ss_dssp             ------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEE
T ss_pred             ------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecC
Confidence                        389999999854    247899999999999999999999999998852      2  3556655542


Q ss_pred             cCCCCCceeEEEEEeC
Q 043808          137 PDPEAGEVPIAYVVRS  152 (206)
Q Consensus       137 ~~~~~~~~~~~~v~~~  152 (206)
                      . ......-+++++..
T Consensus       474 ~-~~~p~hyv~~wE~~  488 (581)
T 4epl_A          474 V-STDPGHYAIFWEIS  488 (581)
T ss_dssp             C-SSSSCEEEEEEEES
T ss_pred             C-CCCCCcEEEEEeec
Confidence            2 22223455556654

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.47  E-value=5.6e-07  Score=75.57  Aligned_cols=105  Identities=13%  Similarity=0.136  Sum_probs=71.2

Q ss_pred             CcccccCccceeccCCccCCCCCCcce-eecCC-ceEEEEeCCCC--------CCCCCCCceEEEEEcCCCCcccCCChh
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAG-RLVAG-VEAQIVCVDTL--------KPLPPNQVGELWVRGPILMPGYFNNEQ   70 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G-~p~~~-~~~~i~~~~~~--------~~~~~g~~Gel~i~~~~~~~~y~~~~~   70 (206)
                      .|++||+  ++.+...  ....+...+ ..+|+ ...+.++.+..        ..+..|..+||+|++-+   |.|    
T Consensus       330 ~Y~ASEg--~~gi~~~--p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~----  398 (581)
T 4eql_A          330 TYGSSET--TFGINLD--PLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVVDLEDVKLGCTYEPVVTNFA---GLY----  398 (581)
T ss_dssp             EEECSSC--EEEECSC--TTSCGGGCCEEECTTSSEEEEEECSTTCCSSCEEGGGCCTTCEEEEEEECSS---SCC----
T ss_pred             ccccccc--eeeeccC--CCCCcccCceeecCCcEEEEEEeccccCCCcEeCHHHcCCCceEEEEEeecc---cee----
Confidence            4899995  2222221  111112222 33444 56677774332        33568999999998742   222    


Q ss_pred             hccccccCCCeEecCceEEEec----CCcEEEeccccceEEECCeEeChHHHHHHHhcCC
Q 043808           71 ATKLIIDKEGWLHTGDLGYFDE----HGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHP  126 (206)
Q Consensus        71 ~~~~~~~~~~~~~TGDl~~~~~----~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~  126 (206)
                                .|++||+++...    ..++.|.||.++++.+.|+++...+||+++.+..
T Consensus       399 ----------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~  448 (581)
T 4eql_A          399 ----------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAK  448 (581)
T ss_dssp             ----------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred             ----------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHH
Confidence                      289999999875    3578999999999999999999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	206
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	3e-70
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	5e-63
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	6e-62
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	1e-54
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	6e-53
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	5e-50
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	9e-45

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  220 bits (562), Expect = 3e-70
 Identities = 93/199 (46%), Positives = 130/199 (65%), Gaps = 3/199 (1%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           GYG+TET   + +     G    G+ G++V   EA++V +DT K L  NQ GEL VRGP+
Sbjct: 336 GYGLTETTSAILITPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPM 393

Query: 61  LMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEG 120
           +M GY NN +AT  +IDK+GWLH+GD+ Y+DE    FIVDR+K LIK  G+QVAPAELE 
Sbjct: 394 IMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELES 453

Query: 121 VLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRN-V 179
           +L+ HP I DA V   PD +AGE+P A VV     ++T++++  +V  QV   K+LR  V
Sbjct: 454 ILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGV 513

Query: 180 TFTNSIPKTTSGKILRREL 198
            F + +PK  +GK+  R++
Sbjct: 514 VFVDEVPKGLTGKLDARKI 532

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  204 bits (519), Expect = 5e-63
 Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 8/205 (3%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
            +  TET G +    P      +GSA R   GV+  +V  +   P      G L +    
Sbjct: 408 TWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSW 466

Query: 61  --LMPGYFNNEQATK--LIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPA 116
                  F + +  +       +    +GD    DE G  +I  R+ +++  +G ++  A
Sbjct: 467 PGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTA 526

Query: 117 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE---DVQKFVVKQVARY 173
           E+E  LV+HP+I +A V+  P    G+   AYV  +     + E   +V+ +V K++   
Sbjct: 527 EIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPL 586

Query: 174 KRLRNVTFTNSIPKTTSGKILRREL 198
                + +T+S+PKT SGKI+RR L
Sbjct: 587 ATPDVLHWTDSLPKTRSGKIMRRIL 611

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  199 bits (506), Expect = 6e-62
 Identities = 62/215 (28%), Positives = 111/215 (51%), Gaps = 12/215 (5%)

Query: 1   GYGMTETCGVVTVE---------NPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPN-- 49
           GYG+TET  VV            +    +      G  +  V  ++   +  +P+P +  
Sbjct: 316 GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGK 374

Query: 50  QVGELWVRGPILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCN 109
            +GE+ ++GP +  GY+ NE+AT+  +  +G+  TGD+  +DE G + I DR+K+LIK  
Sbjct: 375 ALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG 434

Query: 110 GFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQ 169
           G  ++  +LE  L+ HP++ +A V+  P P+  E P+A VV        +E  +  +   
Sbjct: 435 GEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAG 494

Query: 170 VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS 204
            A+++      F   IP+T++GK L+R L  + ++
Sbjct: 495 FAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 529

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  179 bits (454), Expect = 1e-54
 Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 10/204 (4%)

Query: 2   YGMTETCGVVTV-ENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPI 60
           YG TET    T        + +S   G  +   +   +  + L+     + GEL + G  
Sbjct: 307 YGPTETTICATTWVATKETIGHSVPIGAPIQNTQI-YIVDENLQLKSVGEAGELCIGGEG 365

Query: 61  LMPGYFNNEQATKL------IIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVA 114
           L  GY+   + T         +  E    TGD   +   G +  + RI   +K  G +V 
Sbjct: 366 LARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVE 425

Query: 115 PAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYK 174
             E+E +L+ H  I +  V    D +      AY V      +  E +++F  +++  Y 
Sbjct: 426 LEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFV--SEKHIPLEQLRQFSSEELPTYM 483

Query: 175 RLRNVTFTNSIPKTTSGKILRREL 198
                   + +P T++GKI R++L
Sbjct: 484 IPSYFIQLDKMPLTSNGKIDRKQL 507

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  177 bits (449), Expect = 6e-53
 Identities = 50/214 (23%), Positives = 94/214 (43%), Gaps = 16/214 (7%)

Query: 1   GYGMTETCGVVTVENPL-LGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQV-GELWVRG 58
            Y  TE+   +       +     GSA     G++A ++  +T + L  +   G L V+ 
Sbjct: 395 TYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKA 454

Query: 59  --PILMPGYFNNEQATK--LIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVA 114
             P      + N        +    G+  TGD    D+ G ++I+ R+ +++  +G +++
Sbjct: 455 AWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLS 514

Query: 115 PAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLT----------KEDVQK 164
            AE+E  ++  P + +  V+ F D   G+   A+VV    SS +          K+ +  
Sbjct: 515 TAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVF 574

Query: 165 FVVKQVARYKRLRNVTFTNSIPKTTSGKILRREL 198
            V K +  +   + +   + +PKT SGKI+RR L
Sbjct: 575 TVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRIL 608

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  167 bits (424), Expect = 5e-50
 Identities = 48/205 (23%), Positives = 85/205 (41%)

Query: 2   YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPIL 61
                   V              + G+ ++  +   V  D  + + P + G L  RGP  
Sbjct: 329 VFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYT 388

Query: 62  MPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGV 121
           + GY+  E+       ++G+  TGD+      G + +  R K+ I   G +VA  E+E  
Sbjct: 389 IRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENH 448

Query: 122 LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVVKQVARYKRLRNVTF 181
           L++HP + DA ++  PD   GE    +++    +    E       + +A YK    V F
Sbjct: 449 LLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVEF 508

Query: 182 TNSIPKTTSGKILRRELIAKLRSKI 206
             S P+T  GK+ ++ L   +  K+
Sbjct: 509 VESFPQTGVGKVSKKALREAISEKL 533

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  153 bits (386), Expect = 9e-45
 Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 6/204 (2%)

Query: 1   GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGEL-WVRGP 59
            YG TE    + +  P  G + +      V  V    +     + +   + GEL      
Sbjct: 303 IYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIV---RIGGGVDEIVANGEEGELIVAASD 359

Query: 60  ILMPGYFNNEQATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELE 119
               GY N  QAT   + ++GW  T D+  +   G + I+ R+ ++I   G  + P+E+E
Sbjct: 360 SAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIE 418

Query: 120 GVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVV-KQVARYKRLRN 178
            VL + P + + VVI   D   G+   A VV     +L+ + +  F    ++A +KR + 
Sbjct: 419 RVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKR 478

Query: 179 VTFTNSIPKTTSGKILRRELIAKL 202
               + +PK    K+LRR+L+ ++
Sbjct: 479 YFILDQLPKNALNKVLRRQLVQQV 502

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.3e-45  Score=307.17  Aligned_cols=202  Identities=46%  Similarity=0.773  Sum_probs=175.6

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEG   80 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~   80 (206)
                      +||+||+++.++....  ....++++|+|+|+++++|+|++++++++.|+.|||+|+|++++.||++++..+...+..++
T Consensus       336 ~YG~TE~~~~~~~~~~--~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~  413 (541)
T d1lcia_         336 GYGLTETTSAILITPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDG  413 (541)
T ss_dssp             EECCGGGSSCSEECCC--C---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTS
T ss_pred             cCCccccCceEEecCc--ccCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCc
Confidence            4999999988876543  34567899999999999999999999999999999999999999999999988887777899


Q ss_pred             eEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 043808           81 WLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE  160 (206)
Q Consensus        81 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (206)
                      ||+|||+++++++|.++++||.+|+|+++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++|++.+....+.+
T Consensus       414 ~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~  493 (541)
T d1lcia_         414 WLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEK  493 (541)
T ss_dssp             CEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred             cccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999988888999999999888888899


Q ss_pred             HHHHHHHHhccccC-ceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          161 DVQKFVVKQVARYK-RLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       161 ~l~~~~~~~l~~~~-~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ++++++++++.+++ .|..++++++||+|++||++|++|++++.+
T Consensus       494 ~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~  538 (541)
T d1lcia_         494 EIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK  538 (541)
T ss_dssp             HHHHHHHHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHH
Confidence            99999999998765 688999999999999999999999999875

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.9e-43  Score=300.62  Aligned_cols=203  Identities=27%  Similarity=0.376  Sum_probs=183.2

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcC--CCCcccCCChhhccccc--
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP--ILMPGYFNNEQATKLII--   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~--~~~~~y~~~~~~~~~~~--   76 (206)
                      +||+||+|++++...........+++|+|+++++++++| +++++++.|+.|||+|+++  +++.+|+++++.+...+  
T Consensus       408 ~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~  486 (643)
T d1pg4a_         408 TWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFS  486 (643)
T ss_dssp             EBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHS
T ss_pred             eechhhccceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcc
Confidence            499999998776655444466788999999999999999 7899999999999999994  68899999988765443  


Q ss_pred             cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCC
Q 043808           77 DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS  156 (206)
Q Consensus        77 ~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  156 (206)
                      ..++||+|||++++++||.++++||.||+||++|++|+|.+||+.|.++|.|.+|+|++.+++..++.+++||++.++..
T Consensus       487 ~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~  566 (643)
T d1pg4a_         487 TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE  566 (643)
T ss_dssp             SSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred             cCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCC
Confidence            24789999999999999999999999999999999999999999999999999999999999888999999999988776


Q ss_pred             CCH---HHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          157 LTK---EDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       157 ~~~---~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      .+.   .+++++++++|+++++|+.++++++||+|++||++|+.|++++..
T Consensus       567 ~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~  617 (643)
T d1pg4a_         567 PSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAG  617 (643)
T ss_dssp             CCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhcC
Confidence            664   479999999999999999999999999999999999999999864

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.6e-43  Score=292.46  Aligned_cols=203  Identities=31%  Similarity=0.553  Sum_probs=144.0

Q ss_pred             CcccccCccceeccCCccC---------CCCCCcceeecCCceEEEEeCCCCCCCCC--CCceEEEEEcCCCCcccCCCh
Q 043808            1 GYGMTETCGVVTVENPLLG---------VQNSGSAGRLVAGVEAQIVCVDTLKPLPP--NQVGELWVRGPILMPGYFNNE   69 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~---------~~~~~~~G~p~~~~~~~i~~~~~~~~~~~--g~~Gel~i~~~~~~~~y~~~~   69 (206)
                      +||+||++++++.......         ....+++|+|+|+++++|+| ++++.++.  +..|||+|+|++++.||++++
T Consensus       316 ~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~  394 (534)
T d1v25a_         316 GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNE  394 (534)
T ss_dssp             EEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCH
T ss_pred             eccccccccceeecccCccccccCccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCCh
Confidence            4999999998876533221         12346899999999999999 77888766  678999999999999999999


Q ss_pred             hhccccccCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEE
Q 043808           70 QATKLIIDKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYV  149 (206)
Q Consensus        70 ~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v  149 (206)
                      +.+...+..++||+|||++++++||.++++||.+|+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++|
T Consensus       395 ~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~v  474 (534)
T d1v25a_         395 EATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVV  474 (534)
T ss_dssp             HHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC
T ss_pred             hhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEE
Confidence            99988888899999999999999999999999999999999999999999999999999999999999988889999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          150 VRSPNSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ++........+.++..+++.|+++++|..|+++++||+|++|||+|++|+++|++
T Consensus       475 v~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~  529 (534)
T d1v25a_         475 VPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN  529 (534)
T ss_dssp             -------------------CCCTTTSCSBC--------------CCTTHHHHSTT
T ss_pred             EeCCCCCCHHHHHHHHHHhcCCcCCCccEEEEECCCCCCCCccccHHHHHHHHHh
Confidence            8765544443344445777899999999999999999999999999999999876

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.9e-41  Score=284.98  Aligned_cols=204  Identities=25%  Similarity=0.371  Sum_probs=174.6

Q ss_pred             CcccccCccceeccCCc-cCCCCCCcceeecCCceEEEEeCCCCCCC-CCCCceEEEEEc--CCCCcccCCChhhccccc
Q 043808            1 GYGMTETCGVVTVENPL-LGVQNSGSAGRLVAGVEAQIVCVDTLKPL-PPNQVGELWVRG--PILMPGYFNNEQATKLII   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~~~~~~~~~-~~g~~Gel~i~~--~~~~~~y~~~~~~~~~~~   76 (206)
                      +||+||++..++..... .....++++|+|+|+++++|+|++++..+ +.+..|||++++  |+++.+|+++++.+...+
T Consensus       395 ~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~  474 (640)
T d1ry2a_         395 TYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTY  474 (640)
T ss_dssp             CBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHH
T ss_pred             eecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhh
Confidence            59999999877654332 33567789999999999999996666554 456679999998  589999999998886654


Q ss_pred             --cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCC
Q 043808           77 --DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN  154 (206)
Q Consensus        77 --~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  154 (206)
                        +.+|||+|||++++|+||+++|+||.||+||++|++|+|.+||+.|.++|.|.+++|++.+++..++.+++||++.+.
T Consensus       475 ~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~  554 (640)
T d1ry2a_         475 LNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNK  554 (640)
T ss_dssp             TSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC--
T ss_pred             ccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCC
Confidence              456999999999999999999999999999999999999999999999999999999999999899999999998765


Q ss_pred             CCCC----------HHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHc
Q 043808          155 SSLT----------KEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRS  204 (206)
Q Consensus       155 ~~~~----------~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~  204 (206)
                      ....          .++|.+++++.|+++++|+.++++++||+|++|||+|++|++++..
T Consensus       555 ~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~  614 (640)
T d1ry2a_         555 SSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG  614 (640)
T ss_dssp             ----------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred             CCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhC
Confidence            4322          2568888999999999999999999999999999999999998754

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=1.2e-40  Score=275.77  Aligned_cols=197  Identities=25%  Similarity=0.329  Sum_probs=177.5

Q ss_pred             CcccccCccceeccCCc-cCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccc---
Q 043808            1 GYGMTETCGVVTVENPL-LGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLII---   76 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~---   76 (206)
                      .||+||++.+++..... .......+.+.++++..+.+.| ++++.++.|+.|||+|++|+++.||++++..+...+   
T Consensus       306 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~  384 (514)
T d1amua_         306 AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDN  384 (514)
T ss_dssp             EECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEEC
T ss_pred             eeccccCceeeeeccccccccCcccccccceeeeeEeeec-ccceecCCCCeeEEEEccCcccccccccccccceeeEec
Confidence            49999999988655433 2334456789999999999999 899999999999999999999999999988775544   


Q ss_pred             ---cCCCeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCC
Q 043808           77 ---DKEGWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP  153 (206)
Q Consensus        77 ---~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  153 (206)
                         ++++||+|||++++|++|+++++||.+|+|+++|++|+|.+||+.|.++++|.+++|++.++...++.++++++..+
T Consensus       385 ~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~  464 (514)
T d1amua_         385 PFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK  464 (514)
T ss_dssp             SSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS
T ss_pred             cccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCC
Confidence               35789999999999999999999999999999999999999999999999999999999999888999999998765


Q ss_pred             CCCCCHHHHHHHHHHhccccCceeEEEEeCCcCCCCCCcccHHHHHH
Q 043808          154 NSSLTKEDVQKFVVKQVARYKRLRNVTFTNSIPKTTSGKILRRELIA  200 (206)
Q Consensus       154 ~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~  200 (206)
                      .  .+.++|+++++++|+++++|..++++++||+|++|||+|++|++
T Consensus       465 ~--~~~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~  509 (514)
T d1amua_         465 H--IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE  509 (514)
T ss_dssp             C--CCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred             C--CCHHHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence            3  56899999999999999999999999999999999999999876

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.3e-38  Score=264.30  Aligned_cols=203  Identities=25%  Similarity=0.451  Sum_probs=178.3

Q ss_pred             cccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcCCCCcccCCChhhccccccCCCe
Q 043808            2 YGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGYFNNEQATKLIIDKEGW   81 (206)
Q Consensus         2 YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~~~~~~y~~~~~~~~~~~~~~~~   81 (206)
                      |+.+|.+..+...... .....+++|.|+++....+++.++++.++.++.|||+++|+.++.||++++..+...+..++|
T Consensus       330 ~~~~~~~~~~~~~~~~-~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~  408 (536)
T d1mdba_         330 FGMAEGLVNYTRLDDP-EEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGF  408 (536)
T ss_dssp             EECTTSCEEECCTTSC-HHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSC
T ss_pred             cccccccccccccccc-cccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccccccccccccccccccccCc
Confidence            6777776555443322 234557889999776666666589999999999999999999999999999988888878999


Q ss_pred             EecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCHHH
Q 043808           82 LHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKED  161 (206)
Q Consensus        82 ~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (206)
                      |+|||++++++||.++++||.+|+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++|+..+. ..+.++
T Consensus       409 ~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~-~~~~~~  487 (536)
T d1mdba_         409 YRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKAAE  487 (536)
T ss_dssp             EEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS-CCCHHH
T ss_pred             cccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC-CCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999988888889999987654 566789


Q ss_pred             HHHHHHHh-ccccCceeEEEEeCCcCCCCCCcccHHHHHHHHHccC
Q 043808          162 VQKFVVKQ-VARYKRLRNVTFTNSIPKTTSGKILRRELIAKLRSKI  206 (206)
Q Consensus       162 l~~~~~~~-l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~~~~~  206 (206)
                      ++++++++ |+.+++|..++++++||+|++|||+|++|+++++++|
T Consensus       488 l~~~l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~l  533 (536)
T d1mdba_         488 LKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL  533 (536)
T ss_dssp             HHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHHHH
Confidence            99999875 9999999999999999999999999999999998764

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=6.5e-36  Score=245.25  Aligned_cols=198  Identities=26%  Similarity=0.436  Sum_probs=167.4

Q ss_pred             CcccccCccceeccCCccCCCCCCcceeecCCceEEEEeCCCCCCCCCCCceEEEEEcC-CCCcccCCChhhccccccCC
Q 043808            1 GYGMTETCGVVTVENPLLGVQNSGSAGRLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP-ILMPGYFNNEQATKLIIDKE   79 (206)
Q Consensus         1 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~~~~~~~~~~~g~~Gel~i~~~-~~~~~y~~~~~~~~~~~~~~   79 (206)
                      .||+||++..+.......  ......+.+.+.....+.+ ..++.++.|+.|++.+.+. ....+|++++..+.+.+ .+
T Consensus       303 ~yg~~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~  378 (503)
T d3cw9a1         303 IYGTTEAMNSLYMRQPKT--GTEMAPGFFSEVRIVRIGG-GVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QD  378 (503)
T ss_dssp             EEEETTTEEEEEEESCSS--SSEEBCCTTCCEEEECTTS-CTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ET
T ss_pred             cccccccceeeeeccccc--cccccccccccceeeeeec-ccCcccCCCccccccccccccccccccCChhhhHHHh-cC
Confidence            499999988886664432  2222222333333333333 7888999999998877765 56678888888887777 67


Q ss_pred             CeEecCceEEEecCCcEEEeccccceEEECCeEeChHHHHHHHhcCCCcceeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 043808           80 GWLHTGDLGYFDEHGQLFIVDRIKELIKCNGFQVAPAELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK  159 (206)
Q Consensus        80 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (206)
                      +||+|||++++++||.++++||.||+||++|++|+|.+||+.+.++|+|.+++|++.+++..++.++++|++.++...+.
T Consensus       379 g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~  458 (503)
T d3cw9a1         379 GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA  458 (503)
T ss_dssp             TEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH
T ss_pred             CceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999998888899999999988888889


Q ss_pred             HHHHHHHH-HhccccCceeEEEEeCCcCCCCCCcccHHHHHHHH
Q 043808          160 EDVQKFVV-KQVARYKRLRNVTFTNSIPKTTSGKILRRELIAKL  202 (206)
Q Consensus       160 ~~l~~~~~-~~l~~~~~p~~~~~v~~~P~t~~GKv~r~~l~~~~  202 (206)
                      ++++++++ ++|+.+++|+.++++++||+|++|||+|++|++++
T Consensus       459 ~~l~~~~~~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~  502 (503)
T d3cw9a1         459 DALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV  502 (503)
T ss_dssp             HHHHHHHHHSSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence            99999995 67999999999999999999999999999999886