Citrus Sinensis ID: 043816

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVKTHLNRSIETDFNLSVILSYTPAPMISCSRYGQGKIFSASLDSLNIAVELDHPFKNCTGETPIIDTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDSLVSLAAYPERDV
cccccHHHHHHHHHcccHHHHHHHHccccccHHHcccHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccccccccccEEccccccccccccccEEEEEccEEEEEcccccEEEEEcccccEEEcccccccccccccEEEEEEEEcccccEEEEEEEEEccccccccEEEEEEcccccEEEEccccccccccccccEEEcccEEEEEEEccccccccEEEEEEccccEEEEEcccccccccccccEEEEEEccEEEEEEEcccccEEEEEEEcccEEEEEEEcccccccccccEEEEEEEcccEEEEEEccccccccccccccEEEEEEccccEEEEEEEEccccccccEEEEEEcccccccccccccc
cccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHcEEEEEEEccccEEEEEccccccccccccccccccccccccccccccEEEEEEEEccEEEEEEEccccEEEEccccccEEEEcccccccccccEEEEEEccccccccEEEEEEEEccccccccEEEEEEEccccccEEEEcccccccccccccEEEccEEEEEEEcccccccccEEEEEEcccccccccccccccccccEEEEEEEHHHHHHHEEEccccccEEEEEEEEccHHcEEEEccccccccccccccEEEEccccEEEEEEEccccccEEEEEEEEEEEccEEEEEEEEEccccccccccEEEEEcccHEEEcccccccc
merlprdlnmnILSRLSVKCLLRlrcvskpfcslidsqKFVKTHLNrsietdfnlsvilsytpapmiscsrygqgkifsasLDSLNIAveldhpfknctgetpiidtcnglialkngendialwnpstkkhvllpkfwsdfddyadlvdgfgydavsddYKVVRLIQFGRGKVEYTEIAVYSLKsnssrrirvdfpyyfshprdgtfargHVHWLVlnepegyngdlivafdlkseeffevplphlenrdsgnlmymgnfsgclyfscfcdypepvdiwimkeSWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLvdkflydededeginkWELDWYDLQnqraagqvtvhgvpqgcryTMIYVDSLVslaayperdv
merlprdlnmniLSRLSVKCLLRLRCVSKPFCSLIDSQKFVKTHLNRSIETDFNLSVILSYTPAPMISCSRYGQGKIFSASLDSLNIAVELDHPFKNCTGETPIIDTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIqfgrgkveytEIAVyslksnssrrirVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDSLVSLAAYPERDV
MERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVKTHLNRSIETDFNLSVILSYTPAPMISCSRYGQGKIFSASLDSLNIAVELDHPFKNCTGETPIIDTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDSLVSLAAYPERDV
********NMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVKTHLNRSIETDFNLSVILSYTPAPMISCSRYGQGKIFSASLDSLNIAVELDHPFKNCTGETPIIDTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDSLVSLAAY*****
*ERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVKTHLNRSIETDFNLSVILSYTPAPMISCSRYGQGKIFSASLDSLNIAVELDHPFKNCTGETPIIDTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDSLV**********
MERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVKTHLNRSIETDFNLSVILSYTPAPMISCSRYGQGKIFSASLDSLNIAVELDHPFKNCTGETPIIDTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDSLVSLAAYPERDV
*ERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVKTHLNRSIETDFNLSVILSYTPAPMISCSRYGQGKIFSASLDSLNIAVELDHPFKNCTGETPIIDTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDSLVSLAAY*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVKTHLNRSIETDFNLSVILSYTPAPMISCSRYGQGKIFSASLDSLNIAVELDHPFKNCTGETPIIDTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDSLVSLAAYPERDV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query378 2.2.26 [Sep-21-2011]
Q9SU30413 F-box protein CPR30 OS=Ar yes no 0.838 0.767 0.341 3e-42
Q9SUY0402 F-box protein At4g22390 O no no 0.888 0.835 0.310 9e-33
Q8GXC7427 F-box/kelch-repeat protei no no 0.759 0.672 0.280 5e-22
Q9LIR8364 F-box/kelch-repeat protei no no 0.719 0.747 0.292 3e-18
Q9LU24360 Putative F-box protein At no no 0.825 0.866 0.236 1e-17
Q9SFC7417 F-box protein At3g07870 O no no 0.735 0.666 0.253 9e-17
Q7X7A9312 F-box protein At1g11270 O no no 0.605 0.733 0.288 2e-12
Q9SSQ2423 F-box protein At1g52490 O no no 0.751 0.671 0.253 2e-12
Q9SI34376 Putative F-box only prote no no 0.788 0.792 0.236 7e-12
O82622367 Putative F-box protein At no no 0.600 0.618 0.245 1e-11
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function desciption
 Score =  172 bits (437), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 192/375 (51%), Gaps = 58/375 (15%)

Query: 1   MERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVKTHLNRSIETDFNLSVILS 60
           M  +P D+  +I  RL  K L+R R +SKP   LI+   F+++HL+R ++T  +L ++L 
Sbjct: 1   MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLR 60

Query: 61  YTPAPMISCSRYGQGKIFSASLDSLNIAVELDHPFKNCTGETPIIDTCNGLIALKNGEND 120
                       G  +++S  LDSL+   +++HP K   G T +  + NGLI L N   D
Sbjct: 61  ------------GALRLYSVDLDSLDSVSDVEHPMKR-GGPTEVFGSSNGLIGLSNSPTD 107

Query: 121 IALWNPSTKKHVLLPKFWSDFDDYAD----LVDGFGYDAVSDDYKVVRLIQFGRGKVEYT 176
           +A++NPST++   LP    D  D +     +  G GYD+VSDDYKVVR++QF     +  
Sbjct: 108 LAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDEL 167

Query: 177 ------EIAVYSLKSNSSRRIR---------VDFPYYFSHPRD-GTFARGHVHWLVLNEP 220
                 E+ V+SLK NS +RI            F Y+  + R  G  A   +HW++   P
Sbjct: 168 GCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRP 227

Query: 221 EGYNGDLIVAFDLKSEEFFEVPLPHLENRDSGNL---MYMGNFSGCLYFSCFCDYPEP-V 276
                +LIV FDL  EEF  V  P  E   +GN+   M +G   GCL     C+Y +  V
Sbjct: 228 GLIAFNLIVRFDLALEEFEIVRFP--EAVANGNVDIQMDIGVLDGCL--CLMCNYDQSYV 283

Query: 277 DIWIMKE-----SWTKVFSFAG-GVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGIN 330
           D+W+MKE     SWTKVF+         F+Y + L YSK   KVL++           +N
Sbjct: 284 DVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLE-----------LN 332

Query: 331 KWELDWYDLQNQRAA 345
             +L W+DL++++ +
Sbjct: 333 NTKLVWFDLESKKMS 347
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3 Back     alignment and function description
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function description
>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1 Back     alignment and function description
>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 Back     alignment and function description
>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 Back     alignment and function description
>sp|Q7X7A9|FB4_ARATH F-box protein At1g11270 OS=Arabidopsis thaliana GN=At1g11270 PE=2 SV=1 Back     alignment and function description
>sp|Q9SSQ2|FB55_ARATH F-box protein At1g52490 OS=Arabidopsis thaliana GN=At1g52490 PE=4 SV=1 Back     alignment and function description
>sp|Q9SI34|FBX9_ARATH Putative F-box only protein 9 OS=Arabidopsis thaliana GN=FBX9 PE=4 SV=1 Back     alignment and function description
>sp|O82622|FB227_ARATH Putative F-box protein At4g10190 OS=Arabidopsis thaliana GN=At4g10190 PE=4 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
255583943389 ubiquitin-protein ligase, putative [Rici 0.902 0.876 0.394 6e-54
224089629396 f-box family protein [Populus trichocarp 0.912 0.871 0.376 4e-51
224053103408 predicted protein [Populus trichocarpa] 0.886 0.821 0.357 2e-42
224137296419 predicted protein [Populus trichocarpa] 0.880 0.794 0.329 2e-42
224089631400 predicted protein [Populus trichocarpa] 0.902 0.852 0.34 6e-42
297799772406 hypothetical protein ARALYDRAFT_329378 [ 0.822 0.766 0.343 6e-41
30682162413 F-box protein CPR30 [Arabidopsis thalian 0.838 0.767 0.341 2e-40
110738553413 hypothetical protein [Arabidopsis thalia 0.838 0.767 0.341 2e-40
4725955408 putative protein [Arabidopsis thaliana] 0.838 0.776 0.341 2e-40
297809553414 F-box family protein [Arabidopsis lyrata 0.875 0.799 0.332 3e-40
>gi|255583943|ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  217 bits (553), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 153/388 (39%), Positives = 206/388 (53%), Gaps = 47/388 (12%)

Query: 1   MERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVKTHLNRSIETDFNLSVILS 60
           M  LP ++   IL RL+ K LL  RCVSK + +LIDS  F+  HLN SIE+  NLS+IL 
Sbjct: 1   MSNLPLEMIAEILCRLTAKKLLCCRCVSKRWRTLIDSPTFIYLHLNHSIESPCNLSIILK 60

Query: 61  YTPAPMISCSRYGQGKIFSASLDSLNIAVELDHPFKNCTGETPIIDTCNGLIALKNGEND 120
                          +++S S D L+    LDHP         I+ +CNGL+ + N  +D
Sbjct: 61  -------------SSELYSLSFDLLDNIQPLDHPLMCYNHGVKILGSCNGLLCICNIVDD 107

Query: 121 IALWNPSTKKHVLLPKFWSDFDDYADL------VDGFGYDAVSDDYKVVRLIQFG---RG 171
           IALWNPS + H ++P    +   Y  +      V GFGYD  +DDYK+VR+ QFG   R 
Sbjct: 108 IALWNPSIRAHRVVPYLPVELKRYFGMCSCRVSVFGFGYDLSNDDYKLVRIAQFGGVDRK 167

Query: 172 KVEYTEIAVYSLKSNSSRRIRVDFPYYFSHP-RDGTFARGHVHWLVLNEPEGYNGDLIVA 230
             E +E+ V+SL+ NS RRI  D PY   +P  +G +A G +HWLV  +P+    D IVA
Sbjct: 168 SFE-SEVKVFSLRKNSWRRI-ADMPYCVLYPGENGIYANGALHWLVSQDPDSTVADTIVA 225

Query: 231 FDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIM-----KESW 285
            DL  E++  VP P   + +    M +G   GCL    +    E VD+W+M     KESW
Sbjct: 226 LDLGVEDYHVVPKPEFVDMNCN--MGVGVLQGCLSLLAYAR-SERVDVWVMEEYMVKESW 282

Query: 286 TKVFSFAG-GVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYDLQNQRA 344
           +K+FS A   V GI    K LAYSKSG++VL+        E + +N   L WYDL+ +  
Sbjct: 283 SKLFSVARLEVIGILRSLKPLAYSKSGNEVLI--------EHDNVN---LFWYDLKRKEV 331

Query: 345 AGQVTVHGVPQGCRYTMIYVDSLVSLAA 372
              V + GVP       I V SLV L A
Sbjct: 332 V-NVWIQGVPITFE-AEICVGSLVPLNA 357

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224089629|ref|XP_002308787.1| f-box family protein [Populus trichocarpa] gi|222854763|gb|EEE92310.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224053103|ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|222844963|gb|EEE82510.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224137296|ref|XP_002322522.1| predicted protein [Populus trichocarpa] gi|222867152|gb|EEF04283.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224089631|ref|XP_002308788.1| predicted protein [Populus trichocarpa] gi|222854764|gb|EEE92311.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297799772|ref|XP_002867770.1| hypothetical protein ARALYDRAFT_329378 [Arabidopsis lyrata subsp. lyrata] gi|297313606|gb|EFH44029.1| hypothetical protein ARALYDRAFT_329378 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30682162|ref|NP_192993.2| F-box protein CPR30 [Arabidopsis thaliana] gi|145333023|ref|NP_001078377.1| F-box protein CPR30 [Arabidopsis thaliana] gi|142989747|sp|Q9SU30.2|CPR30_ARATH RecName: Full=F-box protein CPR30; AltName: Full=Protein CONSTITUTIVE EXPRESSER OF PR GENES 30 gi|332657747|gb|AEE83147.1| F-box protein CPR30 [Arabidopsis thaliana] gi|332657748|gb|AEE83148.1| F-box protein CPR30 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110738553|dbj|BAF01202.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4725955|emb|CAB41726.1| putative protein [Arabidopsis thaliana] gi|7267958|emb|CAB78299.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297809553|ref|XP_002872660.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297318497|gb|EFH48919.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
TAIR|locus:2135615413 CPR1 "AT4G12560" [Arabidopsis 0.899 0.823 0.330 1.6e-40
TAIR|locus:2127465402 AT4G22390 "AT4G22390" [Arabido 0.886 0.833 0.317 4.6e-34
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.732 0.760 0.300 3.6e-25
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.529 0.468 0.310 1.3e-24
TAIR|locus:2077452417 AT3G07870 "AT3G07870" [Arabido 0.468 0.424 0.253 1.8e-16
TAIR|locus:2094947360 AT3G16210 "AT3G16210" [Arabido 0.698 0.733 0.245 1.2e-12
TAIR|locus:2124665367 AT4G10190 [Arabidopsis thalian 0.616 0.634 0.246 2.1e-12
TAIR|locus:2127333417 AT4G21240 "AT4G21240" [Arabido 0.706 0.640 0.255 4e-12
TAIR|locus:2041016420 AT2G43260 [Arabidopsis thalian 0.693 0.623 0.272 5.4e-12
TAIR|locus:2092995367 AT3G21130 "AT3G21130" [Arabido 0.611 0.629 0.284 6.5e-12
TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 131/396 (33%), Positives = 200/396 (50%)

Query:     1 MERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKFVKTHLNRSIETDFNLSVILS 60
             M  +P D+  +I  RL  K L+R R +SKP   LI+   F+++HL+R ++T  +L ++L 
Sbjct:     1 MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLR 60

Query:    61 YTPAPMISCSRYGQGKIFSASLDSLNIAVELDHPFKNCTGETPIIDTCNGLIALKNGEND 120
                         G  +++S  LDSL+   +++HP K   G T +  + NGLI L N   D
Sbjct:    61 ------------GALRLYSVDLDSLDSVSDVEHPMKR-GGPTEVFGSSNGLIGLSNSPTD 107

Query:   121 IALWNPSTKKHVLLPKFWSDFDDYAD----LVDGFGYDAVSDDYKVVRLIQFGRGKVEYT 176
             +A++NPST++   LP    D  D +     +  G GYD+VSDDYKVVR++QF     +  
Sbjct:   108 LAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDEL 167

Query:   177 ------EIAVYSLKSNSSRRIR-----VDFPYYFSHP----RD-GTFARGHVHWLVLNEP 220
                   E+ V+SLK NS +RI      +   +YF +     R  G  A   +HW++   P
Sbjct:   168 GCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRP 227

Query:   221 EGYNGDLIVAFDLKSEEFFEVPLPH-LENRDSGNLMYMGNFSGCLYFSCFCDYPEP-VDI 278
                  +LIV FDL  EEF  V  P  + N +    M +G   GCL     C+Y +  VD+
Sbjct:   228 GLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCL--MCNYDQSYVDV 285

Query:   279 WIMKE-----SWTKVFSFAGGV-FGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKW 332
             W+MKE     SWTKVF+         F+Y + L YSK   KVL++           +N  
Sbjct:   286 WMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLE-----------LNNT 334

Query:   333 ELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDSLV 368
             +L W+DL++++ +  + +   P      ++ V SLV
Sbjct:   335 KLVWFDLESKKMS-TLRIKDCPSSYSAELV-VSSLV 368
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
GO:0031348 "negative regulation of defense response" evidence=IMP
GO:0042177 "negative regulation of protein catabolic process" evidence=IMP
TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094947 AT3G16210 "AT3G16210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124665 AT4G10190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127333 AT4G21240 "AT4G21240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041016 AT2G43260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092995 AT3G21130 "AT3G21130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00010191
hypothetical protein (408 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 2e-25
pfam0064648 pfam00646, F-box, F-box domain 1e-07
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 4e-07
pfam1293747 pfam12937, F-box-like, F-box-like 4e-04
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score =  102 bits (255), Expect = 2e-25
 Identities = 55/223 (24%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 105 IDTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVR 164
           +  C+GLI    G   + +WNPST +   LP   S   +        GYD +   YKV+ 
Sbjct: 1   VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLC 59

Query: 165 LIQFGRGKVEYTEIAVYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYN 224
                  + +  E  VY+L SNS R I    P++      G    G +++L     +   
Sbjct: 60  FSDRSGNRNQS-EHQVYTLGSNSWRTIECSPPHHPLK-SRGVCINGVLYYLAYTL-KTNP 116

Query: 225 GDLIVAFDLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLYFSCFCDYPEPVDIWIMKES 284
              IV+FD+ SE F E       N DS + + + N+ G L            D+W++ ++
Sbjct: 117 DYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDA 176

Query: 285 ----WTKVFSFAGGVFGIFTYAKALAY-SKSGDKVLVDKFLYD 322
               W+K+F+              L+  +  G+ VL  +    
Sbjct: 177 GKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENP 219

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 378
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.69
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.62
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.56
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.27
PHA02713557 hypothetical protein; Provisional 99.2
PHA02713557 hypothetical protein; Provisional 99.19
PHA03098534 kelch-like protein; Provisional 99.09
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.03
PLN02153341 epithiospecifier protein 99.02
PHA02790480 Kelch-like protein; Provisional 99.01
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.94
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.92
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.91
PLN02193470 nitrile-specifier protein 98.84
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.78
PHA03098534 kelch-like protein; Provisional 98.76
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.76
PHA02790480 Kelch-like protein; Provisional 98.72
PLN02153341 epithiospecifier protein 98.71
PLN02193470 nitrile-specifier protein 98.69
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.66
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.58
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.49
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.45
KOG4693392 consensus Uncharacterized conserved protein, conta 98.02
KOG1230 521 consensus Protein containing repeated kelch motifs 97.68
KOG4693392 consensus Uncharacterized conserved protein, conta 97.5
KOG0281499 consensus Beta-TrCP (transducin repeats containing 97.46
KOG0379482 consensus Kelch repeat-containing proteins [Genera 97.41
KOG1230 521 consensus Protein containing repeated kelch motifs 97.31
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 97.26
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.0
KOG2997366 consensus F-box protein FBX9 [General function pre 96.55
PF1396450 Kelch_6: Kelch motif 96.3
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 95.55
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 94.5
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 94.35
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 94.1
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 93.81
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 91.79
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 91.62
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 91.59
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 91.46
KOG2055 514 consensus WD40 repeat protein [General function pr 90.43
COG3055381 Uncharacterized protein conserved in bacteria [Fun 90.25
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 90.07
PF1396450 Kelch_6: Kelch motif 89.15
KOG4341483 consensus F-box protein containing LRR [General fu 88.77
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 88.56
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 88.01
COG4946 668 Uncharacterized protein related to the periplasmic 87.93
smart00284255 OLF Olfactomedin-like domains. 87.31
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 86.41
KOG1274 933 consensus WD40 repeat protein [General function pr 86.26
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 86.15
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 86.02
PLN02772 398 guanylate kinase 85.32
PF1341549 Kelch_3: Galactose oxidase, central domain 84.98
smart0061247 Kelch Kelch domain. 84.72
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 84.69
smart0061247 Kelch Kelch domain. 84.66
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 84.3
PRK11028 330 6-phosphogluconolactonase; Provisional 84.15
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 83.57
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 82.84
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 82.6
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 82.19
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 81.33
KOG0310 487 consensus Conserved WD40 repeat-containing protein 80.95
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=1.5e-34  Score=255.40  Aligned_cols=224  Identities=25%  Similarity=0.404  Sum_probs=165.8

Q ss_pred             eecccceEEeecCCceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEEEEEcC
Q 043816          105 IDTCNGLIALKNGENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIAVYSLK  184 (378)
Q Consensus       105 ~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~  184 (378)
                      ++|||||||+... ..++||||+||+++.||+++...........+||||+.+++||||++...... .....++||+++
T Consensus         1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~   78 (230)
T TIGR01640         1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLG   78 (230)
T ss_pred             CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeC
Confidence            4799999999875 78999999999999999776532111222689999999999999999764321 245789999999


Q ss_pred             CCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCCCCEEEEEECCCceEe-eecCCCCCCCCCCCeeEEEEeCCe
Q 043816          185 SNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYNGDLIVAFDLKSEEFF-EVPLPHLENRDSGNLMYMGNFSGC  263 (378)
Q Consensus       185 t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~l~~~~G~  263 (378)
                      +++||.+. ..+........+|++||++||++..... .....|++||+++|+|+ .+++|........ ...|++++|+
T Consensus        79 ~~~Wr~~~-~~~~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~-~~~L~~~~G~  155 (230)
T TIGR01640        79 SNSWRTIE-CSPPHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPCGNSDSVD-YLSLINYKGK  155 (230)
T ss_pred             CCCccccc-cCCCCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeecCcccccccc-ceEEEEECCE
Confidence            99999998 3333222233499999999999976432 11137999999999999 5899976542122 5789999999


Q ss_pred             EEEEEecCCCCcEEEEEEcC----ceeeeEEEecCcc-ccceeeEEEEEeecCCEEEEeeccCCCccccccCCcEEEEEE
Q 043816          264 LYFSCFCDYPEPVDIWIMKE----SWTKVFSFAGGVF-GIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINKWELDWYD  338 (378)
Q Consensus       264 L~l~~~~~~~~~i~iW~l~~----~W~~~~~i~~~~~-~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~l~~yd  338 (378)
                      |+++........++||+|++    +|++.++|+.... .......+.++..+|++++...     +    .....++.||
T Consensus       156 L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~-----~----~~~~~~~~y~  226 (230)
T TIGR01640       156 LAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE-----D----ENPFYIFYYN  226 (230)
T ss_pred             EEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC-----C----CCceEEEEEe
Confidence            99998865434799999997    7999999986221 1112256788888887777661     0    1133499999


Q ss_pred             CCCC
Q 043816          339 LQNQ  342 (378)
Q Consensus       339 ~~t~  342 (378)
                      ++++
T Consensus       227 ~~~~  230 (230)
T TIGR01640       227 VGEN  230 (230)
T ss_pred             ccCC
Confidence            9986

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 5e-04
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 17/161 (10%), Positives = 46/161 (28%), Gaps = 30/161 (18%)

Query: 217 LNEPEGYNGDLIVAF------DLKSEEFFEVPLPHLENRDSGNLMYMGNFSGCLY--FSC 268
             E +    D++  F      +   ++  ++P   L   +  +++   +        F  
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 269 FCDYPEPV------DI------WIMKESWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLV 316
                E +      ++      ++M             +  ++   +   Y+   ++V  
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLM-SPIKTEQRQPSMMTRMYIEQRDRLYN--DNQVFA 127

Query: 317 DKFLYDEDEDEGINKWELDWYDLQNQRAAGQVTVHGVPQGC 357
              +        + +       L   R A  V + GV  G 
Sbjct: 128 KYNVSRLQPYLKLRQA------LLELRPAKNVLIDGVL-GS 161
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.39
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.36
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.35
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.29
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.28
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.27
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.25
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.19
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.13
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.11
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.11
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.11
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.07
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 99.04
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.02
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 99.01
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.97
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.96
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.92
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.77
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.46
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.28
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.17
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 98.02
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.44
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.86
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 96.75
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.27
3jrp_A 379 Fusion protein of protein transport protein SEC13 95.9
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 95.5
4e54_B435 DNA damage-binding protein 2; beta barrel, double 95.12
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 95.03
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 94.73
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 94.49
3jro_A 753 Fusion protein of protein transport protein SEC13 94.35
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 94.08
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 94.01
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 93.96
3dwl_C 377 Actin-related protein 2/3 complex subunit 1; prope 93.58
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 93.48
3hfq_A 347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 93.46
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 93.36
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 93.23
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 93.16
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 93.11
1nir_A 543 Nitrite reductase; hemoprotein, denitrification, d 92.39
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 92.07
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 91.87
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 91.85
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 91.85
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 91.58
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 90.97
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 90.54
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 90.51
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 90.34
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 90.24
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 90.01
2vdu_B 450 TRNA (guanine-N(7)-)-methyltransferase- associated 89.96
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 89.81
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 89.53
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 89.45
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 89.13
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 88.67
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 88.15
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 88.11
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 88.08
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 87.5
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 87.4
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 87.36
3v65_B386 Low-density lipoprotein receptor-related protein; 86.95
3jrp_A379 Fusion protein of protein transport protein SEC13 86.26
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 86.2
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 86.16
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 86.09
4g56_B357 MGC81050 protein; protein arginine methyltransfera 85.99
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 85.98
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 85.94
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 85.51
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 84.82
4g56_B357 MGC81050 protein; protein arginine methyltransfera 84.62
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 84.2
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 84.03
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 83.91
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 83.49
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 83.17
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 82.38
2z3z_A 706 Dipeptidyl aminopeptidase IV; peptidase family S9, 82.28
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 82.24
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 81.9
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 81.7
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 81.68
3v64_C349 Agrin; beta propeller, laminin-G, signaling, prote 81.47
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 81.31
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 81.02
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 80.34
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
Probab=99.39  E-value=2.4e-10  Score=103.82  Aligned_cols=236  Identities=9%  Similarity=-0.059  Sum_probs=142.0

Q ss_pred             eecccceEEeecC-----CceEEEEcCCCcceeecCCCCCCCCCCCceeeEEeeeCCCCCEEEEEEEEecCCCCcccEEE
Q 043816          105 IDTCNGLIALKNG-----ENDIALWNPSTKKHVLLPKFWSDFDDYADLVDGFGYDAVSDDYKVVRLIQFGRGKVEYTEIA  179 (378)
Q Consensus       105 ~~s~~Gll~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykVv~~~~~~~~~~~~~~~~  179 (378)
                      ....+|.|.+..+     .+.+.++||.|++|..+|+++..+..  .....  +   .+  +++.+............++
T Consensus        51 ~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~--~---~~--~iyv~GG~~~~~~~~~~~~  121 (306)
T 3ii7_A           51 CVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS--LAACA--A---EG--KIYTSGGSEVGNSALYLFE  121 (306)
T ss_dssp             EEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS--CEEEE--E---TT--EEEEECCBBTTBSCCCCEE
T ss_pred             EEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc--eeEEE--E---CC--EEEEECCCCCCCcEeeeEE
Confidence            3345666655442     35799999999999999887754321  11111  1   22  4444443322233457899


Q ss_pred             EEEcCCCceEEeeccCCccccCCCCceEECCeeEEEEEeCCCCCC---CCEEEEEECCCceEeeec-CCCCCCCCCCCee
Q 043816          180 VYSLKSNSSRRIRVDFPYYFSHPRDGTFARGHVHWLVLNEPEGYN---GDLIVAFDLKSEEFFEVP-LPHLENRDSGNLM  255 (378)
Q Consensus       180 vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~~---~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~  255 (378)
                      +|+..+++|+.++ .+|.. .....++.++|.+|.+++.......   ...+.+||+.+++|+.++ +|....     ..
T Consensus       122 ~~d~~~~~W~~~~-~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~  194 (306)
T 3ii7_A          122 CYDTRTESWHTKP-SMLTQ-RCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK-----NH  194 (306)
T ss_dssp             EEETTTTEEEEEC-CCSSC-CBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB-----SC
T ss_pred             EEeCCCCceEeCC-CCcCC-cceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhh-----cc
Confidence            9999999999998 66543 2223367889999999876432211   345999999999999984 554433     56


Q ss_pred             EEEEeCCeEEEEEecCCC---CcEEEEEEcC-ceeeeEEEecCccccceeeEEEEEeecCCEEEEeeccCCCccccccCC
Q 043816          256 YMGNFSGCLYFSCFCDYP---EPVDIWIMKE-SWTKVFSFAGGVFGIFTYAKALAYSKSGDKVLVDKFLYDEDEDEGINK  331 (378)
Q Consensus       256 ~l~~~~G~L~l~~~~~~~---~~i~iW~l~~-~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~  331 (378)
                      .++..+|+|+++++....   ..+.++.++. .|..+..++.+.   . .. ..++. ++.++++.-+      ......
T Consensus       195 ~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r---~-~~-~~~~~-~~~i~v~GG~------~~~~~~  262 (306)
T 3ii7_A          195 GLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG---V-TV-KCAAV-GSIVYVLAGF------QGVGRL  262 (306)
T ss_dssp             EEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB---S-CC-EEEEE-TTEEEEEECB------CSSSBC
T ss_pred             eEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc---c-ce-eEEEE-CCEEEEEeCc------CCCeee
Confidence            677889999999775431   2455555544 899886555411   1 11 12222 4444444410      000133


Q ss_pred             cEEEEEECCCCeEEEEEEEeccCCCceeEEEEEecccc
Q 043816          332 WELDWYDLQNQRAAGQVTVHGVPQGCRYTMIYVDSLVS  369 (378)
Q Consensus       332 ~~l~~yd~~t~~~~~~v~~~~~~~~~~~~~~y~~sl~~  369 (378)
                      ..+..||+++++|+ .+.-.........+....+...+
T Consensus       263 ~~~~~yd~~~~~W~-~~~~~~~~r~~~~~~~~~~~~~~  299 (306)
T 3ii7_A          263 GHILEYNTETDKWV-ANSKVRAFPVTSCLICVVDTCGA  299 (306)
T ss_dssp             CEEEEEETTTTEEE-EEEEEECCSCTTCEEEEEECC--
T ss_pred             eeEEEEcCCCCeEE-eCCCcccccceeEEEEECCcccC
Confidence            57999999999999 87633222221445555554433
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 378
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 1e-06
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 2e-04
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 0.001
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (100), Expect = 1e-06
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 2  ERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKF 40
          + LP +L + I S L +  LL++  V K +  L   +  
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.19
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.72
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.66
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.57
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.5
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.25
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 98.11
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.69
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 93.35
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 92.17
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 92.11
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 90.88
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 88.96
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 85.96
d1qksa2 432 C-terminal (heme d1) domain of cytochrome cd1-nitr 84.84
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 82.65
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 80.56
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.8e-12  Score=78.15  Aligned_cols=39  Identities=28%  Similarity=0.479  Sum_probs=37.0

Q ss_pred             CCCcHHHHHHHHhcCChhchheeeeccccchhhccChhH
Q 043816            2 ERLPRDLNMNILSRLSVKCLLRLRCVSKPFCSLIDSQKF   40 (378)
Q Consensus         2 ~~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~~i~~p~F   40 (378)
                      +.||+|++.+||++||++++.|+++|||+|+.++.++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            689999999999999999999999999999999998864
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure