Citrus Sinensis ID: 043826

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
CINCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK
Secondary Structure (PSIPRED)
cccEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccEEEEEcccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccHHHcHHHccHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHccccccEEHHHHHHHHHHcccccccEEEEEccEEEEEEEc
Coil and Loop (DISEMBL)
cinctltilhdwndEHCLKLLKNCYKSIPEDGKVIVVELmlpevpntsiesksnfHFDVLMMiqrpdgkertrhefmtlatgagfsgmSCERAIGNLWVMEFYK
Flexible Loop (DISEMBL)
cinctltilhdwndeHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNtsiesksnfhfDVLMMIQRPDGKERTRHEFMTlatgagfsgmsCERAIGNLWVMEFYK
Low Complexity Region (SEG)
CINCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK
Disordered region (IsUnstruct)
*INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQR*******RHEFMTLATGAGFSGMSCERAIGNLWVMEFY*
Disordered Region (DISOPRED)
CINCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK
Disordered Region (DISEMBL)
CINCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK
Disordered Region (DISPRO)
CINCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CINCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	104	2.2.26 [Sep-21-2011]
Q43239	354	Caffeic acid 3-O-methyltr	N/A	no	0.932	0.274	0.567	8e-28
Q9FQY8	359	Caffeic acid 3-O-methyltr	N/A	no	0.932	0.270	0.536	1e-26
P28002	365	Caffeic acid 3-O-methyltr	N/A	no	0.932	0.265	0.525	9e-26
O04385	368	(Iso)eugenol O-methyltran	N/A	no	0.932	0.263	0.536	1e-25
Q43609	365	Caffeic acid 3-O-methyltr	N/A	no	0.932	0.265	0.515	2e-25
Q6ZD89	368	Flavone 3'-O-methyltransf	yes	no	0.932	0.263	0.494	3e-25
O23760	370	Caffeic acid 3-O-methyltr	N/A	no	0.932	0.262	0.536	6e-25
Q8GU25	365	Caffeic acid 3-O-methyltr	N/A	no	0.932	0.265	0.515	9e-25
Q06509	364	Caffeic acid 3-O-methyltr	N/A	no	0.932	0.266	0.505	1e-24
Q41086	364	Caffeic acid 3-O-methyltr	N/A	no	0.932	0.266	0.536	2e-24

>sp|Q43239|COMT1_ZINEL Caffeic acid 3-O-methyltransferase OS=Zinnia elegans PE=2 SV=1

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 69/97 (71%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           ILHDW+D HCL++LKNCYKS+PE+GKVIV E +LPE P+T+  +++  H DV+M+   P 
Sbjct: 258 ILHDWSDAHCLQVLKNCYKSLPENGKVIVAECILPEAPDTTPATQNVIHIDVIMLAHNPG 317

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKERT  EF  LA GAGF G +      N WVMEF K
Sbjct: 318 GKERTEKEFEALAKGAGFKGFNKAACALNTWVMEFCK 354

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.
Zinnia elegans (taxid: 34245)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 8

>sp|Q9FQY8|COMT1_CAPAN Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2

 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 67/97 (69%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           I HDW+DEHCLK LKNCY+++P +GKV+V E +LPE P+TS  +K+  H D++M+   P 
Sbjct: 263 ICHDWSDEHCLKFLKNCYEALPANGKVLVAECILPETPDTSAATKNAVHVDIVMLAHNPG 322

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKERT  EF  LA GAGF+G          WVMEF+K
Sbjct: 323 GKERTEKEFEALAKGAGFTGFRRACCAYQTWVMEFHK 359

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Capsicum annuum (taxid: 4072)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1

 Score =  115 bits (287), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 67/97 (69%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           I HDW+DEHCLK LKNCY+++P++GKVIV E +LP  P++S+ +K   H DV+M+   P 
Sbjct: 267 ICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPG 326

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKERT+ EF  LA GAGF G        N ++MEF K
Sbjct: 327 GKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|O04385|IEMT_CLABR (Iso)eugenol O-methyltransferase OS=Clarkia breweri GN=IEMT1 PE=1 SV=2

 Score =  115 bits (287), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/97 (53%), Positives = 62/97 (63%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           I HDW+DEHCLKLLKNCY ++P+ GKVIV E +LP  P+ SI +K   H D LM+   P 
Sbjct: 270 ICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPG 329

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKERT  EF  LA  +GF G        N +VMEF K
Sbjct: 330 GKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366

Catalyzes the methylation of the para-4-hydroxyl of both eugenol and (iso)eugenol to methyleugenol and isomethyleugenol, respectively. The resulting products are part of a complex mixture of low-molecular-weight volatile compounds emitted by the flowers to attract pollinators.

Clarkia breweri (taxid: 36903)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 6

>sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 67/97 (69%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           I HDW+DEHCLK LKNCY ++P++GKVI+ E +LP  P++S+ +K   H DV+M+   P 
Sbjct: 267 ICHDWSDEHCLKFLKNCYAALPDNGKVILGECILPVAPDSSLATKGVVHIDVIMLAHNPG 326

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKERT  EF  LA GAGF G +   +  N +V+EF K
Sbjct: 327 GKERTEQEFQALAKGAGFQGFNVACSAFNTYVIEFLK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Prunus dulcis (taxid: 3755)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q6ZD89|OMT1_ORYSJ Flavone 3'-O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=ROMT-9 PE=1 SV=1

 Score =  114 bits (284), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/97 (49%), Positives = 62/97 (63%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           ILHDW+DEHC +LLKNCY ++PE GKV+VVE +LPE  + +   +  FH D++M+   P 
Sbjct: 272 ILHDWSDEHCARLLKNCYDALPEHGKVVVVECVLPESSDATAREQGVFHVDMIMLAHNPG 331

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKER   EF  LA  AGF+G        N W +EF K
Sbjct: 332 GKERYEREFRELARAAGFTGFKATYIYANAWAIEFTK 368

Methylates OH residues of flavonoid compounds. Substrate preference is quercetin > luteolin >> myricetin >>> eriodictyol.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 6

>sp|O23760|COMT1_CLABR Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1

 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 62/97 (63%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           I HDW+DEHCLK LKNCY ++PE GKVIV E +LP  P+ S+ +K   H D +M+   P 
Sbjct: 272 ICHDWSDEHCLKFLKNCYAALPEHGKVIVAECILPLSPDPSLATKGVIHIDAIMLAHNPG 331

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKERT  EF  LA GAGF G        N +VMEF K
Sbjct: 332 GKERTEKEFEALAIGAGFKGFKVACCAFNTYVMEFLK 368

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Clarkia breweri (taxid: 36903)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q8GU25|COMT1_ROSCH Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 66/97 (68%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           I HDW+DEHCLK LKNCY ++P++GKVI+ E +LP  P+TS+ +K   H DV+M+   P 
Sbjct: 267 ICHDWSDEHCLKFLKNCYAALPDNGKVILGECILPVAPDTSLATKGVVHIDVVMLAHNPG 326

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKERT  EF  LA G+GF G+       N +V+EF K
Sbjct: 327 GKERTEQEFEALAKGSGFQGIRVACNAFNTYVIEFLK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Rosa chinensis (taxid: 74649)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q06509|COMT1_MAIZE Caffeic acid 3-O-methyltransferase OS=Zea mays PE=3 SV=1

 Score =  111 bits (277), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/97 (50%), Positives = 62/97 (63%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           ILHDW+D HC  LLKNCY ++PE+GKVIVVE +LP     + +++  FH D++M+   P 
Sbjct: 268 ILHDWSDAHCATLLKNCYDALPENGKVIVVECVLPVNTEATPKAQGVFHVDMIMLAHNPG 327

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKER   EF  LA GAGFSG        N W +EF K
Sbjct: 328 GKERYEREFRELAKGAGFSGFKATYIYANAWAIEFIK 364

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Zea mays (taxid: 4577)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q41086|COMT2_POPTM Caffeic acid 3-O-methyltransferase 2 OS=Populus tremuloides GN=OMT2 PE=3 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 65/97 (67%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           I HDW+DEHCL  LKNCY ++PE+GKVI+VE +LP  P+TS+ +K   H DV+M+   P 
Sbjct: 266 ICHDWSDEHCLTFLKNCYDALPENGKVILVECILPVAPDTSLATKGVMHVDVIMLAHNPG 325

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKERT  EF +LA GAGF G        N  V+EF K
Sbjct: 326 GKERTDREFESLARGAGFKGFEVMCCAFNTHVIEFRK 362

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
145695037	353	O-methyltransferase [Citrus sinensis x C	0.942	0.277	0.887	2e-46
284437809	377	O-methyltransferase-like protein [Prunus	0.932	0.257	0.649	1e-31
388512375	377	unknown [Lotus japonicus]	0.932	0.257	0.618	2e-30
224128073	358	catechol o-methyltransferase related [Po	0.932	0.270	0.618	4e-30
356520217	372	PREDICTED: anthranilate N-methyltransfer	0.932	0.260	0.608	1e-29
357512651	375	Caffeic acid 3-O-methyltransferase [Medi	0.932	0.258	0.628	8e-29
388509410	375	unknown [Medicago truncatula]	0.932	0.258	0.628	8e-29
225453646	357	PREDICTED: caffeic acid 3-O-methyltransf	0.932	0.271	0.618	3e-28
224068173	359	catechol o-methyltransferase [Populus tr	0.932	0.270	0.622	1e-27
224158666	129	predicted protein [Populus trichocarpa]	0.932	0.751	0.622	2e-27

>gi|145695037|gb|ABP94018.1| O-methyltransferase [Citrus sinensis x Citrus reticulata]

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/98 (88%), Positives = 91/98 (92%)

Query: 7   TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRP 66
           ++LHDWNDEHCLKLLKNCYKSIPEDGKVIVVE MLPEVPNTSIESKSN H DVLMMIQ P
Sbjct: 256 SVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSP 315

Query: 67  DGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
            GKERTRHEFMTLATGAGF G+SCE AIG+LWVMEFYK
Sbjct: 316 GGKERTRHEFMTLATGAGFGGISCELAIGSLWVMEFYK 353

Source: Citrus sinensis x Citrus reticulata

Species: Citrus sinensis x Citrus reticulata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284437809|gb|ADB85561.1| O-methyltransferase-like protein [Prunus mume]

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 76/97 (78%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           ILHDW+DEHCLKLLKNCYK+IP++GKVIVVE +LP +P TS  +K+    DV+MM Q P 
Sbjct: 281 ILHDWSDEHCLKLLKNCYKAIPDNGKVIVVEALLPAMPETSTATKTTSQLDVVMMTQNPG 340

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKER+  EFM LATGAGFSG+  E  + N WVMEF+K
Sbjct: 341 GKERSEQEFMALATGAGFSGIRYECFVCNFWVMEFFK 377

Source: Prunus mume

Species: Prunus mume

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512375|gb|AFK44249.1| unknown [Lotus japonicus]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 77/97 (79%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           ILHDW+DEHCLKLLKNCYK+IP+DGKVIVV+ ++P VP T+  +K+ F+ D++MM Q P 
Sbjct: 281 ILHDWSDEHCLKLLKNCYKAIPDDGKVIVVDSVVPAVPETTTAAKNVFNSDLIMMTQNPG 340

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKERT HEFM LA G+GF G+    ++  LWVMEF+K
Sbjct: 341 GKERTEHEFMELAKGSGFRGIRFVCSVSGLWVMEFFK 377

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128073|ref|XP_002320237.1| catechol o-methyltransferase related [Populus trichocarpa] gi|118481911|gb|ABK92890.1| unknown [Populus trichocarpa] gi|222861010|gb|EEE98552.1| catechol o-methyltransferase related [Populus trichocarpa]

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/97 (61%), Positives = 73/97 (75%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           ILHDW+D+HCLKLLKNCYK+IP++GKVIV+E +L     TS  +++    DVLMM Q P 
Sbjct: 262 ILHDWSDDHCLKLLKNCYKAIPDNGKVIVMESVLSITAKTSPAARAISQLDVLMMTQNPG 321

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKERT HEFM LATGAGF G+  E  + N WVMEF+K
Sbjct: 322 GKERTEHEFMALATGAGFRGIKYEAFVCNFWVMEFFK 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520217|ref|XP_003528760.1| PREDICTED: anthranilate N-methyltransferase-like [Glycine max]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 75/97 (77%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           ILHDW+DE CLKLLKNC+K+IP DGKVIVV+L+LP +P +++ +KS F  D+LMM Q   
Sbjct: 276 ILHDWSDEQCLKLLKNCHKAIPSDGKVIVVDLILPILPESTVTAKSGFQADLLMMTQNSG 335

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKERT+HEFM LA  +GFSG+    ++   WVMEFYK
Sbjct: 336 GKERTQHEFMELALSSGFSGIKIVCSVSGFWVMEFYK 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512651|ref|XP_003626614.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|87240858|gb|ABD32716.1| O-methyltransferase, family 2; Dimerisation [Medicago truncatula] gi|355501629|gb|AES82832.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula]

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 73/97 (75%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           ILHDW+DEHCLKLLKNCYK+IPEDGKVIVV+ +LP +P T+  +K+    DVLMM Q P 
Sbjct: 279 ILHDWSDEHCLKLLKNCYKAIPEDGKVIVVDTILPVMPETTANAKTACMSDVLMMTQNPG 338

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKERT HEF  LA G+GFS +     +  LWVMEF+K
Sbjct: 339 GKERTEHEFKELAKGSGFSAIKPICCVSGLWVMEFFK 375

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509410|gb|AFK42771.1| unknown [Medicago truncatula]

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 73/97 (75%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           ILHDW+DEHCLKLLKNCYK+IPEDGKVIVV+ +LP +P T+  +K+    DVLMM Q P 
Sbjct: 279 ILHDWSDEHCLKLLKNCYKAIPEDGKVIVVDTILPVMPETTANAKTACMSDVLMMTQNPG 338

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKERT HEF  LA G+GFS +     +  LWVMEF+K
Sbjct: 339 GKERTEHEFKELAEGSGFSAIKPICCVSGLWVMEFFK 375

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453646|ref|XP_002267543.1| PREDICTED: caffeic acid 3-O-methyltransferase 1 [Vitis vinifera]

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 72/97 (74%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           ILHDW+DEHCLKLLKNCY ++PE GKVIVVE +LP  P TS   K+    D++MM Q P 
Sbjct: 261 ILHDWSDEHCLKLLKNCYNALPEHGKVIVVEGVLPAAPETSAVVKAVSQTDLIMMAQNPG 320

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKERTR EF+ LATGAGF+G+  E  +   WVMEF+K
Sbjct: 321 GKERTREEFLDLATGAGFAGIRFECFVLTYWVMEFFK 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068173|ref|XP_002302676.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844402|gb|EEE81949.1| catechol o-methyltransferase [Populus trichocarpa]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/98 (62%), Positives = 73/98 (74%), Gaps = 1/98 (1%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMI-QRP 66
           ILH+W+D+HCLKLLKNCYK+IPEDGKVIV+E +LP    TS  +K+    DVLMM+ Q P
Sbjct: 262 ILHNWSDDHCLKLLKNCYKAIPEDGKVIVMESVLPITAKTSPAAKAISQLDVLMMMSQNP 321

Query: 67  DGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
            GKERT  EFM LAT AGF G+  E  + N WVMEF+K
Sbjct: 322 GGKERTEDEFMALATAAGFRGIKFETFVCNFWVMEFFK 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224158666|ref|XP_002337998.1| predicted protein [Populus trichocarpa] gi|222870203|gb|EEF07334.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/98 (62%), Positives = 73/98 (74%), Gaps = 1/98 (1%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMI-QRP 66
           ILH+W+D+HCLKLLKNCYK+IPEDGKVIV+E +LP    TS  +K+    DVLMM+ Q P
Sbjct: 32  ILHNWSDDHCLKLLKNCYKAIPEDGKVIVMESVLPITAKTSPAAKAISQLDVLMMMSQNP 91

Query: 67  DGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
            GKERT  EFM LAT AGF G+  E  + N WVMEF+K
Sbjct: 92  GGKERTEDEFMALATAAGFRGIKFETFVCNFWVMEFFK 129

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
UNIPROTKB|Q6ZD89	368	ROMT-9 "Flavone 3'-O-methyltra	0.932	0.263	0.494	1.1e-23
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.855	0.245	0.537	4.8e-23
TAIR|locus:2038026	352	AT1G33030 [Arabidopsis thalian	0.932	0.275	0.463	3.9e-21
UNIPROTKB|Q84N28	360	OMT1 "Flavone O-methyltransfer	0.932	0.269	0.453	8e-21
TAIR|locus:2199607	373	IGMT1 "indole glucosinolate O-	0.932	0.260	0.479	2.9e-20
TAIR|locus:2199597	373	IGMT3 "indole glucosinolate O-	0.932	0.260	0.479	2.9e-20
TAIR|locus:2199582	373	IGMT4 "indole glucosinolate O-	0.932	0.260	0.479	3.8e-20
TAIR|locus:2030081	367	IGMT5 "indole glucosinolate O-	0.932	0.264	0.459	3e-19
TAIR|locus:2199587	373	IGMT2 "indole glucosinolate O-	0.932	0.260	0.469	3.3e-19
UNIPROTKB|A8QW52	376	EOMT "Eugenol O-methyltransfer	0.932	0.257	0.444	7.8e-19

UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 48/97 (49%), Positives = 62/97 (63%)

Query:     8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
             ILHDW+DEHC +LLKNCY ++PE GKV+VVE +LPE  + +   +  FH D++M+   P 
Sbjct:   272 ILHDWSDEHCARLLKNCYDALPEHGKVVVVECVLPESSDATAREQGVFHVDMIMLAHNPG 331

Query:    68 GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
             GKER   EF  LA  AGF+G        N W +EF K
Sbjct:   332 GKERYEREFRELARAAGFTGFKATYIYANAWAIEFTK 368

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 50/93 (53%), Positives = 65/93 (69%)

Query:     8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
             I HDW+DEHC+K LKNCY+S+PEDGKVI+ E +LPE P++S+ +K   H D +M+   P 
Sbjct:   265 ICHDWSDEHCVKFLKNCYESLPEDGKVILAECILPETPDSSLSTKQVVHVDCIMLAHNPG 324

Query:    68 GKERTRHEFMTLATGAGFSGMS--CERAIG-NL 97
             GKERT  EF  LA  +GF G+   C+ A G NL
Sbjct:   325 GKERTEKEFEALAKASGFKGIKVVCD-AFGVNL 356

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 45/97 (46%), Positives = 66/97 (68%)

Query:     8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
             +LH W+D+HC+K+L NCY+S+P +GKVIVV++++PE P  ++  +S F F++ MM   P 
Sbjct:   254 MLHSWDDDHCVKILSNCYQSLPSNGKVIVVDMVIPEFPGDTLLDRSLFQFELFMMNMNPS 313

Query:    68 GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
             GKERT+ EF  LA  AGFS +          V+EF+K
Sbjct:   314 GKERTKKEFEILARLAGFSNVQVPFTSLCFSVLEFHK 350

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 44/97 (45%), Positives = 61/97 (62%)

Query:     8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
             ILHDW+DEHC  LLKNCY ++P  GKV++VE +LP  P  + +++  FH D++M+   P 
Sbjct:   264 ILHDWSDEHCATLLKNCYDALPAHGKVVLVECILPVNPEATPKAQGVFHVDMIMLAHNPG 323

Query:    68 GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
             G+ER   EF  LA GAGF  +       N + +EF K
Sbjct:   324 GRERYEREFEALAKGAGFKAIKTTYIYANAFAIEFTK 360

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

TAIR|locus:2199607 IGMT1 "indole glucosinolate O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.9e-20, P = 2.9e-20
 Identities = 47/98 (47%), Positives = 63/98 (64%)

Query:     8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP-EVPNTSIESKSNFHFDVLMMIQRP 66
             ILHDW DE C+K+LKNC+KS+PE+GKV+V+EL+ P E  N  I +   F  D+LM  Q  
Sbjct:   276 ILHDWTDEDCVKILKNCWKSLPENGKVVVIELVTPDEAENGDINANIAFDMDMLMFTQCS 335

Query:    67 DGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
              GKER+R EF  LA  +GF+         + W++EF K
Sbjct:   336 GGKERSRAEFEALAAASGFTHCKFVCQAYHCWIIEFCK 373

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA;IDA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042343 "indole glucosinolate metabolic process" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199597 IGMT3 "indole glucosinolate O-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.9e-20, P = 2.9e-20
 Identities = 47/98 (47%), Positives = 63/98 (64%)

Query:     8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP-EVPNTSIESKSNFHFDVLMMIQRP 66
             ILHDW DE C+K+LKNC+KS+P++GKV+V+EL+ P E  N  I +   F  D+LM  Q  
Sbjct:   276 ILHDWTDEDCVKILKNCWKSLPQNGKVVVIELVTPDEAENGDINANIAFDMDMLMFTQCS 335

Query:    67 DGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
              GKER+R EF  LA  +GFS         + W++EF K
Sbjct:   336 GGKERSRAEFEALAAASGFSHCQFVCQAYHCWIIEFCK 373

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199582 IGMT4 "indole glucosinolate O-methyltransferase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 3.8e-20, P = 3.8e-20
 Identities = 47/98 (47%), Positives = 62/98 (63%)

Query:     8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP-EVPNTSIESKSNFHFDVLMMIQRP 66
             ILHDW DE C+K+LKNC+KS+PE GKV+V+EL+ P E  N  I +   F  D+LM  Q  
Sbjct:   276 ILHDWTDEDCVKILKNCWKSLPESGKVVVIELVTPDEAENGDINANIAFDMDMLMFTQCS 335

Query:    67 DGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
              GKER+R EF  LA  +GF+         + W++EF K
Sbjct:   336 GGKERSRAEFEALAAASGFTHCKFVCQAYHCWIIEFCK 373

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2030081 IGMT5 "indole glucosinolate O-methyltransferase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 3.0e-19, P = 3.0e-19
 Identities = 45/98 (45%), Positives = 65/98 (66%)

Query:     8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP-EVPNTSIESKSNFHFDVLMMIQRP 66
             ILHDW DE C K+LKNC+K++PE+GKVIV+E++ P E  N  + S   F  D+LM+ Q  
Sbjct:   268 ILHDWTDEDCEKILKNCWKALPENGKVIVMEVVTPDEADNRDVISNIAFDMDLLMLTQLS 327

Query:    67 DGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
              GKER+R E++ +A  +GF   +   +  +LWV+E  K
Sbjct:   328 GGKERSRAEYVAMAANSGFPRCNFVCSAYHLWVIELTK 365

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199587 IGMT2 "indole glucosinolate O-methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 3.3e-19, P = 3.3e-19
 Identities = 46/98 (46%), Positives = 62/98 (63%)

Query:     8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP-EVPNTSIESKSNFHFDVLMMIQRP 66
             ILHDW DE C+K+LKNC+KS+PE+GKV+V+EL+ P E  N  I +   F  D+LM  Q  
Sbjct:   276 ILHDWTDEDCVKILKNCWKSLPENGKVVVIELVTPDEAENGDINANIAFDMDMLMFTQCS 335

Query:    67 DGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
              GKER+R EF  LA  + F+         + W++EF K
Sbjct:   336 GGKERSRAEFEALAAASCFTHCKFVCQAYHCWIIEFCK 373

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA;IDA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042343 "indole glucosinolate metabolic process" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|A8QW52 EOMT "Eugenol O-methyltransferase" [Sorghum bicolor (taxid:4558)]

 Score = 229 (85.7 bits), Expect = 7.8e-19, P = 7.8e-19
 Identities = 44/99 (44%), Positives = 63/99 (63%)

Query:     8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDV-LMMIQRP 66
             ILH+W D+ C+K+LKNCY ++P +G VI++E +LPE P  ++ S+  F FD+ +M+    
Sbjct:   278 ILHNWGDKECVKILKNCYTALPVNGTVIILEYILPETPEETLASQLAFDFDLGMMLFFGA 337

Query:    67 DGKERTRHEFMTLATGAGFSG-MSCERAIGNLWVMEFYK 104
              GKERT  E + LA  AGFSG  +      N+W  EF K
Sbjct:   338 SGKERTEKELLELAREAGFSGDYTATYIFANVWAHEFTK 376

GO:0008171 "O-methyltransferase activity" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: COMT4 SubName- Full=Putative uncharacterized protein; (358 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	104
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	1e-29

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  105 bits (264), Expect = 1e-29
 Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 2/74 (2%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           +LHDW+DE C+K+LK CY+++P  GKVIVVE++LPE P+  +E++     D+ M++    
Sbjct: 168 VLHDWSDEDCVKILKRCYEALPPGGKVIVVEMVLPEDPDDDLETEV-LLLDLNMLVLNG- 225

Query: 68  GKERTRHEFMTLAT 81
           GKERT  E+  L +
Sbjct: 226 GKERTEKEWRKLLS 239

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.91
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.86
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.62
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.04
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.02
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.87
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.85
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.82
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.78
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.73
PLN02490	340	MPBQ/MSBQ methyltransferase	98.71
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.7
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.69
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.67
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.65
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.64
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.62
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.6
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.59
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.59
PLN02336	475	phosphoethanolamine N-methyltransferase	98.51
PLN02244	340	tocopherol O-methyltransferase	98.42
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.31
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.27
PRK04266	226	fibrillarin; Provisional	98.23
TIGR03438	301	probable methyltransferase. This model represents	98.23
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.21
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.21
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.18
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.15
PRK08317	241	hypothetical protein; Provisional	98.14
PLN02336	475	phosphoethanolamine N-methyltransferase	98.02
PRK11207	197	tellurite resistance protein TehB; Provisional	98.01
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	97.9
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.82
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.8
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.78
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.56
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	97.54
PRK12335	287	tellurite resistance protein TehB; Provisional	97.53
KOG2361	264	consensus Predicted methyltransferase [General fun	97.53
PRK06922	677	hypothetical protein; Provisional	97.48
KOG4300	252	consensus Predicted methyltransferase [General fun	97.41
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	97.4
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.35
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.33
PRK06202	232	hypothetical protein; Provisional	97.31
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.27
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	97.16
PTZ00146	293	fibrillarin; Provisional	97.13
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.13
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.12
PLN03075	296	nicotianamine synthase; Provisional	97.1
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	97.08
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	97.06
PRK05785	226	hypothetical protein; Provisional	97.04
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.03
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.98
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	96.89
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	96.64
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	96.58
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.57
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.41
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	96.36
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.33
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	96.23
PRK13255	218	thiopurine S-methyltransferase; Reviewed	96.22
PRK14968	188	putative methyltransferase; Provisional	96.21
COG4798	238	Predicted methyltransferase [General function pred	96.16
PRK10258	251	biotin biosynthesis protein BioC; Provisional	96.11
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.01
COG4301	321	Uncharacterized conserved protein [Function unknow	95.99
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	95.86
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	95.63
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	95.57
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	95.57
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	95.26
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	95.18
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	95.03
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	94.94
KOG2899	288	consensus Predicted methyltransferase [General fun	94.9
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	94.88
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	94.77
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	94.64
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	94.24
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	94.18
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	94.13
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	94.07
PRK13256	226	thiopurine S-methyltransferase; Reviewed	93.73
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	93.55
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	93.5
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	93.34
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	93.13
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	92.19
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	91.79
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	91.65
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	90.71
COG3315	297	O-Methyltransferase involved in polyketide biosynt	90.6
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	90.2
PF10017	127	Methyltransf_33: Histidine-specific methyltransfer	90.16
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	90.08
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	89.43
PRK14967	223	putative methyltransferase; Provisional	89.03
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	87.77
KOG1331	293	consensus Predicted methyltransferase [General fun	87.66
TIGR00438	188	rrmJ cell division protein FtsJ.	87.65
PRK07402	196	precorrin-6B methylase; Provisional	86.46
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	86.33
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	86.14
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	85.87
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	85.8
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	85.25
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	84.54
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	84.52
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	84.24
COG4123	248	Predicted O-methyltransferase [General function pr	82.72
COG2521	287	Predicted archaeal methyltransferase [General func	82.61
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	82.32
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	82.18
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	82.13
PF07109	97	Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl	81.47
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	81.13
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	81.01
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	80.04

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.91  E-value=5.8e-24  Score=148.31  Aligned_cols=103  Identities=43%  Similarity=0.624  Sum_probs=91.0

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC-CCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEV-PNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLA   80 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~-~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll   80 (104)
                      +++++||||||+|++|.++|+||+++|+|||++++.|.+.|+. ...+..+......|+.|+..+++|++|+.+||+.++
T Consensus       239 aI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~  318 (342)
T KOG3178|consen  239 AIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALL  318 (342)
T ss_pred             eEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcc
Confidence            5899999999999999999999999999999999999998863 222222344567999999988779999999999999


Q ss_pred             HhCCCCceEEEEeCCCeEEEEEEC
Q 043826           81 TGAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        81 ~~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      .++||...++.-.+-..++||++|
T Consensus       319 ~~~gF~~~~~~~~~~~~~~Ie~~k  342 (342)
T KOG3178|consen  319 PEEGFPVCMVALTAYSYSVIEFHK  342 (342)
T ss_pred             hhhcCceeEEEeccCccchheeCC
Confidence            999999999999988999999987

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.86  E-value=2.7e-22  Score=135.40  Aligned_cols=79  Identities=30%  Similarity=0.644  Sum_probs=67.7

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCC--CEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPED--GKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTL   79 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pg--g~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~l   79 (104)
                      +|++++|||+|+|++|.+||++++++|+||  |+|+|+|.+.++.+..+........+|++||+++ +|++||.+||++|
T Consensus       161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~l  239 (241)
T PF00891_consen  161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEAL  239 (241)
T ss_dssp             EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHH
T ss_pred             ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHH
Confidence            699999999999999999999999999999  9999999999888766543222257999999987 7999999999999


Q ss_pred             HH
Q 043826           80 AT   81 (104)
Q Consensus        80 l~   81 (104)
                      ++
T Consensus       240 l~  241 (241)
T PF00891_consen  240 LK  241 (241)
T ss_dssp             HH
T ss_pred             hC
Confidence            84

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.62  E-value=2.5e-15  Score=104.71  Aligned_cols=87  Identities=9%  Similarity=0.159  Sum_probs=63.2

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhh-hhhhhhhhcCCCceecCHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNF-HFDVLMMIQRPDGKERTRHEFMTLA   80 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~-~~~l~m~~~~~~g~~rt~~e~~~ll   80 (104)
                      +|++++++|+|+++++.++|++++++|+|||+++|+|.+.++...+ ....... ...+.|+..  -...++.+||.+|+
T Consensus       218 ~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~ll  294 (306)
T TIGR02716       218 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENP-NFDYLSHYILGAGMPFS--VLGFKEQARYKEIL  294 (306)
T ss_pred             EEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc-hhhHHHHHHHHcccccc--cccCCCHHHHHHHH
Confidence            5789999999999999999999999999999999999987655422 2111111 111122211  12235689999999


Q ss_pred             HhCCCCceEEE
Q 043826           81 TGAGFSGMSCE   91 (104)
Q Consensus        81 ~~aGf~~~~~~   91 (104)
                      ++|||+.++++
T Consensus       295 ~~aGf~~v~~~  305 (306)
T TIGR02716       295 ESLGYKDVTMV  305 (306)
T ss_pred             HHcCCCeeEec
Confidence            99999998765

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00740 methyltransferase, putative

Probab=99.04  E-value=1.1e-10  Score=78.82  Aligned_cols=95  Identities=14%  Similarity=0.057  Sum_probs=63.1

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhh-----------------cCC
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMI-----------------QRP   66 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~-----------------~~~   66 (104)
                      +...++|++++++..+++++++++|+|||++++.|.+.++++....     ....+.+..                 ...
T Consensus       127 ~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  201 (239)
T TIGR00740       127 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH-----LLIDLHHQFKRANGYSELEISQKRTALEN  201 (239)
T ss_pred             eeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence            4567899999988999999999999999999999987655432111     011111000                 000


Q ss_pred             CceecCHHHHHHHHHhCCCCceEEEEeCCCeEEEEEE
Q 043826           67 DGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY  103 (104)
Q Consensus        67 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~  103 (104)
                      .-...|.+++.+++++|||+.+++......++++-++
T Consensus       202 ~~~~~s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~  238 (239)
T TIGR00740       202 VMRTDSIETHKARLKNVGFSHVELWFQCFNFGSLVAV  238 (239)
T ss_pred             cCCCCCHHHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence            1235799999999999999987654433444444433

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.02  E-value=7.8e-10  Score=73.72  Aligned_cols=77  Identities=22%  Similarity=0.266  Sum_probs=61.8

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      -..+|++-+++|++..+.|++|.++|+|||.++|-|.+.....         ..+|-     .+++..||.+.|+++|++
T Consensus       126 IW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~-----~DsSvTRs~~~~~~lF~~  191 (218)
T PF05891_consen  126 IWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE-----EDSSVTRSDEHFRELFKQ  191 (218)
T ss_dssp             EEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET-----TTTEEEEEHHHHHHHHHH
T ss_pred             EEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC-----ccCeeecCHHHHHHHHHH
Confidence            3578999999999999999999999999999999999976431         13443     357888999999999999


Q ss_pred             CCCCceEEEEe
Q 043826           83 AGFSGMSCERA   93 (104)
Q Consensus        83 aGf~~~~~~~~   93 (104)
                      ||+++++...-
T Consensus       192 AGl~~v~~~~Q  202 (218)
T PF05891_consen  192 AGLRLVKEEKQ  202 (218)
T ss_dssp             CT-EEEEEEE-
T ss_pred             cCCEEEEeccc
Confidence            99999976554

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.87  E-value=1.9e-08  Score=69.01  Aligned_cols=95  Identities=19%  Similarity=0.171  Sum_probs=61.4

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhh---hhhcCCC-----------ce
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVL---MMIQRPD-----------GK   69 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~---m~~~~~~-----------g~   69 (104)
                      ++..++|+++|.  .++|+++++.|+|||++++.|...++.+-.+...  ...+...   .....+.           ..
T Consensus       150 ~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~  225 (261)
T PLN02233        150 TMGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQ--EWMIDNVVVPVATGYGLAKEYEYLKSSINE  225 (261)
T ss_pred             EEecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHH--HHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence            466789999875  7899999999999999999998765432111100  0001000   0000000           23


Q ss_pred             ecCHHHHHHHHHhCCCCceEEEEeCC-CeEEEEE
Q 043826           70 ERTRHEFMTLATGAGFSGMSCERAIG-NLWVMEF  102 (104)
Q Consensus        70 ~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~vie~  102 (104)
                      .++.+|+.++++++||+.++.....+ ..++..+
T Consensus       226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~  259 (261)
T PLN02233        226 YLTGEELEKLALEAGFSSAKHYEISGGLMGNLVA  259 (261)
T ss_pred             cCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence            46999999999999999998887764 3444433

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.85  E-value=1.2e-08  Score=65.23  Aligned_cols=95  Identities=19%  Similarity=0.174  Sum_probs=59.7

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhh---hcCCC-----------ce
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMM---IQRPD-----------GK   69 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~---~~~~~-----------g~   69 (104)
                      ++..++|+++|.  .+.|+++++.|+|||+++|.|...+++.-....  ..........   .....           ..
T Consensus        49 ~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~  124 (160)
T PLN02232         49 TMGYGLRNVVDR--LRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFM--QGWMIDNVVVPVATVYDLAKEYEYLKYSING  124 (160)
T ss_pred             EecchhhcCCCH--HHHHHHHHHHcCcCeEEEEEECCCCChHHHHHH--HHHHccchHhhhhHHhCChHHHHhHHHHHHH
Confidence            456789999875  799999999999999999999865432100000  0000000000   00000           12


Q ss_pred             ecCHHHHHHHHHhCCCCceEEEEeC-CCeEEEEE
Q 043826           70 ERTRHEFMTLATGAGFSGMSCERAI-GNLWVMEF  102 (104)
Q Consensus        70 ~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~  102 (104)
                      ..+.+|+.++++++||+.++..... +..++..+
T Consensus       125 f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~  158 (160)
T PLN02232        125 YLTGEELETLALEAGFSSACHYEISGGFMGNLVA  158 (160)
T ss_pred             CcCHHHHHHHHHHcCCCcceEEECcchHhHeeEe
Confidence            3588999999999999999877764 34455444

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.82  E-value=5e-08  Score=67.03  Aligned_cols=82  Identities=15%  Similarity=0.262  Sum_probs=57.3

Q ss_pred             eccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826            5 TLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG   84 (104)
Q Consensus         5 ~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG   84 (104)
                      ...++|++++++..++|+++++.|+|||++++.|...+......  .    .+. ...... .-...+.++|.+++++||
T Consensus       123 s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~--~----~~~-~~~~~~-~~~~~~~~~~~~~l~~aG  194 (263)
T PTZ00098        123 SRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWD--E----EFK-AYIKKR-KYTLIPIQEYGDLIKSCN  194 (263)
T ss_pred             EhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcH--H----HHH-HHHHhc-CCCCCCHHHHHHHHHHCC
Confidence            34677888877789999999999999999999998654321111  0    010 011000 122358899999999999


Q ss_pred             CCceEEEEeC
Q 043826           85 FSGMSCERAI   94 (104)
Q Consensus        85 f~~~~~~~~~   94 (104)
                      |+.++.....
T Consensus       195 F~~v~~~d~~  204 (263)
T PTZ00098        195 FQNVVAKDIS  204 (263)
T ss_pred             CCeeeEEeCc
Confidence            9999887654

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.78  E-value=8.8e-08  Score=63.91  Aligned_cols=96  Identities=18%  Similarity=0.219  Sum_probs=64.6

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhh----hcCCC------------
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMM----IQRPD------------   67 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~----~~~~~------------   67 (104)
                      +...++|++++.  ..+|+++.+.|+|||++++.|...+....   .......+...++    ....+            
T Consensus       126 ~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (239)
T PRK00216        126 TIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESI  200 (239)
T ss_pred             EEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHH
Confidence            456788988875  68899999999999999999986654321   0000000000000    00001            


Q ss_pred             ceecCHHHHHHHHHhCCCCceEEEEeC-CCeEEEEEEC
Q 043826           68 GKERTRHEFMTLATGAGFSGMSCERAI-GNLWVMEFYK  104 (104)
Q Consensus        68 g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~  104 (104)
                      ...++.++|.+++++|||+.+++.... +..+++.++|
T Consensus       201 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  238 (239)
T PRK00216        201 RAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK  238 (239)
T ss_pred             HhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence            123578899999999999999998864 6788988876

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.73  E-value=2e-07  Score=61.63  Aligned_cols=96  Identities=14%  Similarity=0.135  Sum_probs=62.5

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcC-------CC---------
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQR-------PD---------   67 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~-------~~---------   67 (104)
                      ++..++|+.++.  ..+|+++.+.|+|||++++.+...+...  +... ....+.-.++...       .+         
T Consensus       111 ~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (223)
T TIGR01934       111 TIAFGLRNVTDI--QKALREMYRVLKPGGRLVILEFSKPANA--LLKK-FYKFYLKNVLPSIGGLISKNAEAYTYLPESI  185 (223)
T ss_pred             EEeeeeCCcccH--HHHHHHHHHHcCCCcEEEEEEecCCCch--hhHH-HHHHHHHHhhhhhhhhhcCCchhhHHHHHHH
Confidence            345678888764  6899999999999999999997654331  1100 0000100111000       00         


Q ss_pred             ceecCHHHHHHHHHhCCCCceEEEEeCC-CeEEEEEEC
Q 043826           68 GKERTRHEFMTLATGAGFSGMSCERAIG-NLWVMEFYK  104 (104)
Q Consensus        68 g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~vie~~~  104 (104)
                      ....+.++|..+++++||+.+++.+... ...+++++|
T Consensus       186 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  223 (223)
T TIGR01934       186 RAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK  223 (223)
T ss_pred             HhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence            1234788999999999999999998865 467888775

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.71  E-value=1.4e-07  Score=67.09  Aligned_cols=77  Identities=23%  Similarity=0.343  Sum_probs=56.1

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|+|+|.  .++|+++++.|+|||++++.+...++..    ..+  ...+..+       ...+.+|+.+++++
T Consensus       182 VIs~~~L~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~----~~r--~~~~~~~-------~~~t~eEl~~lL~~  246 (340)
T PLN02490        182 YVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFW----LSR--FFADVWM-------LFPKEEEYIEWFTK  246 (340)
T ss_pred             EEEcChhhhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchh----HHH--Hhhhhhc-------cCCCHHHHHHHHHH
Confidence            4567789999987  4789999999999999999876543221    111  1112211       12578999999999


Q ss_pred             CCCCceEEEEeC
Q 043826           83 AGFSGMSCERAI   94 (104)
Q Consensus        83 aGf~~~~~~~~~   94 (104)
                      +||+.+++....
T Consensus       247 aGF~~V~i~~i~  258 (340)
T PLN02490        247 AGFKDVKLKRIG  258 (340)
T ss_pred             CCCeEEEEEEcC
Confidence            999999988764

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.70  E-value=4.3e-08  Score=66.67  Aligned_cols=86  Identities=15%  Similarity=0.073  Sum_probs=55.8

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhh-----------hhh-hcCCC-cee
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDV-----------LMM-IQRPD-GKE   70 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l-----------~m~-~~~~~-g~~   70 (104)
                      ++..++|++++++...++++++++|+|||.+++.|.+.+++...... ......+.           .-. ....+ -..
T Consensus       130 v~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~  208 (247)
T PRK15451        130 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLT  208 (247)
T ss_pred             ehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccc
Confidence            44568999998888999999999999999999999776554321110 00000000           000 00001 123


Q ss_pred             cCHHHHHHHHHhCCCCceEE
Q 043826           71 RTRHEFMTLATGAGFSGMSC   90 (104)
Q Consensus        71 rt~~e~~~ll~~aGf~~~~~   90 (104)
                      -|.++..+||++|||+.++.
T Consensus       209 ~~~~~~~~~L~~aGF~~v~~  228 (247)
T PRK15451        209 DSVETHKARLHKAGFEHSEL  228 (247)
T ss_pred             CCHHHHHHHHHHcCchhHHH
Confidence            58899999999999997654

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.69  E-value=4.6e-09  Score=71.07  Aligned_cols=96  Identities=18%  Similarity=0.282  Sum_probs=33.5

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhh----hhh--cC---------CC
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVL----MMI--QR---------PD   67 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~----m~~--~~---------~~   67 (104)
                      .+++..||+.+|.  .+.|+++++.|+|||+++|.|...|+.+-   .. ....+.+.    .+.  ..         ..
T Consensus       120 v~~~fglrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~~~---~~-~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~  193 (233)
T PF01209_consen  120 VTCSFGLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRNPL---LR-ALYKFYFKYILPLIGRLLSGDREAYRYLPE  193 (233)
T ss_dssp             EEEES-GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SSHH---HH-HHHHH-------------------------
T ss_pred             EEHHhhHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCCch---hh-ceeeeeeccccccccccccccccccccccc
Confidence            4567889999986  67999999999999999999998876531   00 00001110    000  00         01


Q ss_pred             --ceecCHHHHHHHHHhCCCCceEEEEeC-CCeEEEEEEC
Q 043826           68 --GKERTRHEFMTLATGAGFSGMSCERAI-GNLWVMEFYK  104 (104)
Q Consensus        68 --g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~  104 (104)
                        .+..+.+|+.++++++||+.++..+.. +..++..++|
T Consensus       194 Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K  233 (233)
T PF01209_consen  194 SIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK  233 (233)
T ss_dssp             ----------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccCC
Confidence              123467899999999999999887764 5566666655

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.67  E-value=3.5e-07  Score=62.15  Aligned_cols=98  Identities=21%  Similarity=0.266  Sum_probs=65.9

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhh-hhhcCC-----C--------
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVL-MMIQRP-----D--------   67 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~-m~~~~~-----~--------   67 (104)
                      ++.++..||+.+|-  .+.|+++++.|+|||++++.|+..|+.+..   ......+..+ .+-..+     +        
T Consensus       122 ~vt~~fglrnv~d~--~~aL~E~~RVlKpgG~~~vle~~~p~~~~~---~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~  196 (238)
T COG2226         122 AVTISFGLRNVTDI--DKALKEMYRVLKPGGRLLVLEFSKPDNPVL---RKAYILYYFKYVLPLIGKLVAKDAEAYEYLA  196 (238)
T ss_pred             EEEeeehhhcCCCH--HHHHHHHHHhhcCCeEEEEEEcCCCCchhh---HHHHHHHHHHhHhhhhceeeecChHHHHHHH
Confidence            46788999999975  899999999999999999999987765322   1111222222 111110     0        


Q ss_pred             ---ceecCHHHHHHHHHhCCCCceEEEEeC-CCeEEEEEEC
Q 043826           68 ---GKERTRHEFMTLATGAGFSGMSCERAI-GNLWVMEFYK  104 (104)
Q Consensus        68 ---g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~  104 (104)
                         -+.-+.+++.++++++||+.+...... +...+.-+.|
T Consensus       197 eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K  237 (238)
T COG2226         197 ESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK  237 (238)
T ss_pred             HHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence               123467899999999999999855554 4455554443

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.65  E-value=2e-07  Score=62.34  Aligned_cols=94  Identities=19%  Similarity=0.244  Sum_probs=62.4

Q ss_pred             eccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchh-hhhhh----------------hhhhcCCC
Q 043826            5 TLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSN-FHFDV----------------LMMIQRPD   67 (104)
Q Consensus         5 ~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~-~~~~l----------------~m~~~~~~   67 (104)
                      +...+|+.++.  .++|+++.+.|+|||++++.|...+..+   ...... ..+..                ..+.. ..
T Consensus       120 ~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~  193 (231)
T TIGR02752       120 IGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIP---GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQE-ST  193 (231)
T ss_pred             EecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCCh---HHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHH-HH
Confidence            45678888776  6899999999999999999886543321   110000 00000                00000 01


Q ss_pred             ceecCHHHHHHHHHhCCCCceEEEEeC-CCeEEEEEEC
Q 043826           68 GKERTRHEFMTLATGAGFSGMSCERAI-GNLWVMEFYK  104 (104)
Q Consensus        68 g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~  104 (104)
                      ....+.+++.++++++||+.+++.... +..+++.++|
T Consensus       194 ~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~  231 (231)
T TIGR02752       194 RDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK  231 (231)
T ss_pred             HHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence            123578999999999999999998886 6788888876

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.64  E-value=8.8e-08  Score=60.17  Aligned_cols=77  Identities=13%  Similarity=0.071  Sum_probs=55.3

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhc-CCCceecCHHHHHHHHHh
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQ-RPDGKERTRHEFMTLATG   82 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~-~~~g~~rt~~e~~~ll~~   82 (104)
                      +...+||+.+|  ..++|+++++.|+|||.+++.+...+... +.      ......+... ..+...+|.++|.+++++
T Consensus        83 ~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  153 (161)
T PF13489_consen   83 ICNDVLEHLPD--PEEFLKELSRLLKPGGYLVISDPNRDDPS-PR------SFLKWRYDRPYGGHVHFFSPDELRQLLEQ  153 (161)
T ss_dssp             EEESSGGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSHH-HH------HHHHCCGTCHHTTTTEEBBHHHHHHHHHH
T ss_pred             hhHHHHhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCcchh-hh------HHHhcCCcCccCceeccCCHHHHHHHHHH
Confidence            45689999997  58999999999999999999998764310 00      0011111100 025577899999999999


Q ss_pred             CCCCceE
Q 043826           83 AGFSGMS   89 (104)
Q Consensus        83 aGf~~~~   89 (104)
                      +||++++
T Consensus       154 ~G~~iv~  160 (161)
T PF13489_consen  154 AGFEIVE  160 (161)
T ss_dssp             TTEEEEE
T ss_pred             CCCEEEE
Confidence            9999875

...

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.62  E-value=4.1e-07  Score=62.42  Aligned_cols=79  Identities=13%  Similarity=0.269  Sum_probs=55.7

Q ss_pred             eccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826            5 TLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG   84 (104)
Q Consensus         5 ~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG   84 (104)
                      ...++|+++|.  .++++++++.|+|||++++.+......  .+..    ...+..+.... .+...+.+++.++++++|
T Consensus       152 ~~~v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~--~~~~----~~~~~~~~~~~-~~~~~~~~e~~~~l~~aG  222 (272)
T PRK11873        152 SNCVINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGE--LPEE----IRNDAELYAGC-VAGALQEEEYLAMLAEAG  222 (272)
T ss_pred             EcCcccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCC--CCHH----HHHhHHHHhcc-ccCCCCHHHHHHHHHHCC
Confidence            34578888765  679999999999999999999876432  1111    12223322211 345678999999999999


Q ss_pred             CCceEEEE
Q 043826           85 FSGMSCER   92 (104)
Q Consensus        85 f~~~~~~~   92 (104)
                      |..+++..
T Consensus       223 f~~v~i~~  230 (272)
T PRK11873        223 FVDITIQP  230 (272)
T ss_pred             CCceEEEe
Confidence            99987754

>TIGR00452 methyltransferase, putative

Probab=98.60  E-value=4.5e-07  Score=63.90  Aligned_cols=82  Identities=13%  Similarity=0.080  Sum_probs=55.6

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhC
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGA   83 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~a   83 (104)
                      +...+||+++|.  ...|++++++|+|||++++.+.+.+.+.......   ....-.|..   .-...|.+++..|++++
T Consensus       193 ~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p---~~ry~k~~n---v~flpS~~~L~~~L~~a  264 (314)
T TIGR00452       193 FSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP---KDRYAKMKN---VYFIPSVSALKNWLEKV  264 (314)
T ss_pred             EEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCc---hHHHHhccc---cccCCCHHHHHHHHHHC
Confidence            345689999876  6899999999999999999887765433211000   000111110   01235899999999999


Q ss_pred             CCCceEEEEe
Q 043826           84 GFSGMSCERA   93 (104)
Q Consensus        84 Gf~~~~~~~~   93 (104)
                      ||+.+++...
T Consensus       265 GF~~V~i~~~  274 (314)
T TIGR00452       265 GFENFRILDV  274 (314)
T ss_pred             CCeEEEEEec
Confidence            9999988764

Known examples to date are restricted to the proteobacteria.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.59  E-value=6.4e-07  Score=63.29  Aligned_cols=81  Identities=15%  Similarity=0.170  Sum_probs=55.3

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCC-ceecCHHHHHHHHHh
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD-GKERTRHEFMTLATG   82 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~-g~~rt~~e~~~ll~~   82 (104)
                      +...++||.+|.  ..+|++++++|+|||++++.+.+.+.+........  ..+ .. +   .+ -..+|.+++.+|+++
T Consensus       194 ~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~--~~y-~~-~---~~~~~lps~~~l~~~L~~  264 (322)
T PRK15068        194 FSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPG--DRY-AK-M---RNVYFIPSVPALKNWLER  264 (322)
T ss_pred             EECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCch--hHH-hc-C---ccceeCCCHHHHHHHHHH
Confidence            345689998876  68999999999999999887766654432211000  000 01 1   01 123689999999999


Q ss_pred             CCCCceEEEEe
Q 043826           83 AGFSGMSCERA   93 (104)
Q Consensus        83 aGf~~~~~~~~   93 (104)
                      +||+.+++...
T Consensus       265 aGF~~i~~~~~  275 (322)
T PRK15068        265 AGFKDVRIVDV  275 (322)
T ss_pred             cCCceEEEEeC
Confidence            99999988765

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.59  E-value=7.1e-07  Score=59.27  Aligned_cols=98  Identities=18%  Similarity=0.121  Sum_probs=77.2

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhC
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGA   83 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~a   83 (104)
                      +..|++|--+-+.+..+++.+.+.|+|||.|+++-+..-+..-.++   ....||...-..-+....|+.+++.++.+++
T Consensus       107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~  183 (204)
T PF06080_consen  107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SNAAFDASLRSRDPEWGIRDIEDVEALAAAH  183 (204)
T ss_pred             eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HHHHHHHHHhcCCCCcCccCHHHHHHHHHHC
Confidence            4578999999999999999999999999999999987654422111   2245776655433467889999999999999


Q ss_pred             CCCceEEEEeCCCeEEEEEEC
Q 043826           84 GFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        84 Gf~~~~~~~~~~~~~vie~~~  104 (104)
                      ||+..+++.++.+.-++..+|
T Consensus       184 GL~l~~~~~MPANN~~Lvfrk  204 (204)
T PF06080_consen  184 GLELEEDIDMPANNLLLVFRK  204 (204)
T ss_pred             CCccCcccccCCCCeEEEEeC
Confidence            999999999986665555554

The function of this family is unknown.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.51  E-value=6.5e-07  Score=65.89  Aligned_cols=79  Identities=13%  Similarity=0.166  Sum_probs=56.2

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhC
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGA   83 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~a   83 (104)
                      +...++|+++|.  .++|+++++.|+|||++++.|.........+.   ....  +.    ..+...++.+++.++++++
T Consensus       337 ~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~---~~~~--~~----~~g~~~~~~~~~~~~l~~a  405 (475)
T PLN02336        337 YSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSPE---FAEY--IK----QRGYDLHDVQAYGQMLKDA  405 (475)
T ss_pred             EECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHH---HHHH--HH----hcCCCCCCHHHHHHHHHHC
Confidence            445688888875  68999999999999999999986543321111   1111  11    1134568999999999999


Q ss_pred             CCCceEEEEe
Q 043826           84 GFSGMSCERA   93 (104)
Q Consensus        84 Gf~~~~~~~~   93 (104)
                      ||+++++...
T Consensus       406 GF~~i~~~d~  415 (475)
T PLN02336        406 GFDDVIAEDR  415 (475)
T ss_pred             CCeeeeeecc
Confidence            9999977653

>PLN02244 tocopherol O-methyltransferase

Probab=98.42  E-value=3.8e-06  Score=59.68  Aligned_cols=88  Identities=11%  Similarity=0.140  Sum_probs=54.7

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-CCCccc-chhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVP-NTSIES-KSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~-~~~~~~-~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +...++|+++|.  .++++++++.|+|||+++|.+....... ...... .....++-...... .-...+.++|.++++
T Consensus       191 ~s~~~~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~  267 (340)
T PLN02244        191 WSMESGEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAE  267 (340)
T ss_pred             EECCchhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHH
Confidence            345688999875  6899999999999999999987542211 110000 00011110000000 111248899999999


Q ss_pred             hCCCCceEEEEeC
Q 043826           82 GAGFSGMSCERAI   94 (104)
Q Consensus        82 ~aGf~~~~~~~~~   94 (104)
                      ++||+.+++....
T Consensus       268 ~aGf~~v~~~d~s  280 (340)
T PLN02244        268 SLGLQDIKTEDWS  280 (340)
T ss_pred             HCCCCeeEeeeCc
Confidence            9999999887653

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.31  E-value=2.1e-06  Score=58.84  Aligned_cols=82  Identities=18%  Similarity=0.268  Sum_probs=56.3

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchh--hhhhh---------------hhhhc
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSN--FHFDV---------------LMMIQ   64 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~--~~~~l---------------~m~~~   64 (104)
                      .|.+..-+-+|+|.  .+.|+++++.|+|||++.+.|+--.+++  + ...+.  ..++.               ..|+.
T Consensus       180 ~yTiafGIRN~th~--~k~l~EAYRVLKpGGrf~cLeFskv~~~--~-l~~fy~~ysf~VlpvlG~~iagd~~sYqYLve  254 (296)
T KOG1540|consen  180 AYTIAFGIRNVTHI--QKALREAYRVLKPGGRFSCLEFSKVENE--P-LKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVE  254 (296)
T ss_pred             eEEEecceecCCCH--HHHHHHHHHhcCCCcEEEEEEccccccH--H-HHHHHHhhhhhhhchhhHhhhhhHhhhhhHHh
Confidence            58888999999986  7999999999999999999998544321  0 11111  11111               01110


Q ss_pred             CCCceecCHHHHHHHHHhCCCCceE
Q 043826           65 RPDGKERTRHEFMTLATGAGFSGMS   89 (104)
Q Consensus        65 ~~~g~~rt~~e~~~ll~~aGf~~~~   89 (104)
                      . =-+.-+.+|+..+.++|||+.+.
T Consensus       255 S-I~rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  255 S-IRRFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             h-hhcCCCHHHHHHHHHHcCCcccc
Confidence            0 11345789999999999999987

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.27  E-value=4.3e-06  Score=56.98  Aligned_cols=85  Identities=13%  Similarity=0.012  Sum_probs=49.3

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchh--hhhh--hhhhhcCCCceecCHHHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSN--FHFD--VLMMIQRPDGKERTRHEFMT   78 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~--~~~~--l~m~~~~~~g~~rt~~e~~~   78 (104)
                      .+...++|+.+|.  .++++++++.|+|||++++......+.+.........  ..+.  +.-.....+....+.+++.+
T Consensus        93 v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  170 (255)
T PRK14103         93 VVSNAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAE  170 (255)
T ss_pred             EEEehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHH
Confidence            4567789988875  7899999999999999988642111111000000000  0010  00000011223468999999


Q ss_pred             HHHhCCCCceE
Q 043826           79 LATGAGFSGMS   89 (104)
Q Consensus        79 ll~~aGf~~~~   89 (104)
                      +|++|||++..
T Consensus       171 ~l~~aGf~v~~  181 (255)
T PRK14103        171 LLTDAGCKVDA  181 (255)
T ss_pred             HHHhCCCeEEE
Confidence            99999998543

>PRK04266 fibrillarin; Provisional

Probab=98.23  E-value=7.2e-06  Score=55.36  Aligned_cols=76  Identities=14%  Similarity=0.082  Sum_probs=49.6

Q ss_pred             cccccCChHH-HHHHHHHHHhhCCCCCEEEEE-eeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826            7 TILHDWNDEH-CLKLLKNCYKSIPEDGKVIVV-ELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG   84 (104)
Q Consensus         7 ~vlH~~~d~~-~~~iL~~~~~aL~pgg~l~i~-d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG   84 (104)
                      .++|+.++++ ...+|+++++.|+|||+++|. ..- +              .|...     +.. +..++..++++++|
T Consensus       144 ~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~-~--------------~d~~~-----~~~-~~~~~~~~~l~~aG  202 (226)
T PRK04266        144 VIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKAR-S--------------IDVTK-----DPK-EIFKEEIRKLEEGG  202 (226)
T ss_pred             EEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEecc-c--------------ccCcC-----CHH-HHHHHHHHHHHHcC
Confidence            3568877654 456789999999999999994 320 0              01000     000 11245569999999


Q ss_pred             CCceEEEEeCCC---eEEEEEE
Q 043826           85 FSGMSCERAIGN---LWVMEFY  103 (104)
Q Consensus        85 f~~~~~~~~~~~---~~vie~~  103 (104)
                      |+.++.....+.   +..+.++
T Consensus       203 F~~i~~~~l~p~~~~h~~~v~~  224 (226)
T PRK04266        203 FEILEVVDLEPYHKDHAAVVAR  224 (226)
T ss_pred             CeEEEEEcCCCCcCCeEEEEEE
Confidence            999999887644   6665554

>TIGR03438 probable methyltransferase

Probab=98.23  E-value=9.8e-06  Score=56.71  Aligned_cols=35  Identities=9%  Similarity=0.198  Sum_probs=32.0

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIV   36 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i   36 (104)
                      ++++.+.+|+++++++..+|++++++|+|||.+++
T Consensus       141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li  175 (301)
T TIGR03438       141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI  175 (301)
T ss_pred             EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            56777899999999999999999999999999986

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.21  E-value=3.9e-06  Score=59.37  Aligned_cols=86  Identities=8%  Similarity=0.005  Sum_probs=54.6

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccc-hhhhhhhhhhhc-C-CCceecCHHHHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESK-SNFHFDVLMMIQ-R-PDGKERTRHEFMTL   79 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~-~~~~~~l~m~~~-~-~~g~~rt~~e~~~l   79 (104)
                      .+...+||+++|.  ..+|+++++.|+|||.+++........   ..... ....+-...+-. + ...+.++.+|+.++
T Consensus       202 Vi~~~vLeHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~l  276 (322)
T PLN02396        202 VLSLEVIEHVANP--AEFCKSLSALTIPNGATVLSTINRTMR---AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMI  276 (322)
T ss_pred             EEEhhHHHhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHH
Confidence            3556799999987  689999999999999999887532110   00000 000000000100 0 01235799999999


Q ss_pred             HHhCCCCceEEEEe
Q 043826           80 ATGAGFSGMSCERA   93 (104)
Q Consensus        80 l~~aGf~~~~~~~~   93 (104)
                      ++++||+++++..+
T Consensus       277 L~~aGf~i~~~~G~  290 (322)
T PLN02396        277 LQRASVDVKEMAGF  290 (322)
T ss_pred             HHHcCCeEEEEeee
Confidence            99999999988654

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.21  E-value=1e-05  Score=53.83  Aligned_cols=74  Identities=14%  Similarity=0.247  Sum_probs=53.1

Q ss_pred             eccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826            5 TLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG   84 (104)
Q Consensus         5 ~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG   84 (104)
                      ...++|+++|.  ..+++++++.|+|||++++.+...+.. .+...     ..        ......+.++|.++++++|
T Consensus        73 ~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~-----~~--------~~~~~~s~~~~~~~l~~~G  136 (224)
T smart00828       73 GFEVIHHIKDK--MDLFSNISRHLKDGGHLVLADFIANLL-SAIEH-----EE--------TTSYLVTREEWAELLARNN  136 (224)
T ss_pred             hHHHHHhCCCH--HHHHHHHHHHcCCCCEEEEEEcccccC-ccccc-----cc--------cccccCCHHHHHHHHHHCC
Confidence            45678888774  799999999999999999998754321 11000     00        0111357899999999999


Q ss_pred             CCceEEEEeC
Q 043826           85 FSGMSCERAI   94 (104)
Q Consensus        85 f~~~~~~~~~   94 (104)
                      |+.++.....
T Consensus       137 f~~~~~~~~~  146 (224)
T smart00828      137 LRVVEGVDAS  146 (224)
T ss_pred             CeEEEeEECc
Confidence            9999887764

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.18  E-value=3.7e-06  Score=57.35  Aligned_cols=91  Identities=9%  Similarity=-0.007  Sum_probs=54.5

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcc-cchhhhhhhhhh----hcCCCceecCHHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIE-SKSNFHFDVLMM----IQRPDGKERTRHEFM   77 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~-~~~~~~~~l~m~----~~~~~g~~rt~~e~~   77 (104)
                      .++..++|+++|+  .++|+++++.|+|||++++.........-.... ..... ..-.+.    .........+.+++.
T Consensus       116 V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~l~  192 (255)
T PRK11036        116 ILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDY-VQAGMPKRKKRTLSPDYPLDPEQVY  192 (255)
T ss_pred             EEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHH-HHhcCccccccCCCCCCCCCHHHHH
Confidence            3567889999876  589999999999999999876543210000000 00000 000000    000012235789999


Q ss_pred             HHHHhCCCCceEEEEeCCC
Q 043826           78 TLATGAGFSGMSCERAIGN   96 (104)
Q Consensus        78 ~ll~~aGf~~~~~~~~~~~   96 (104)
                      +|++++||+++++..+.+.
T Consensus       193 ~~l~~aGf~~~~~~gi~~~  211 (255)
T PRK11036        193 QWLEEAGWQIMGKTGVRVF  211 (255)
T ss_pred             HHHHHCCCeEeeeeeEEEE
Confidence            9999999999877765433

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.15  E-value=1.3e-06  Score=60.07  Aligned_cols=79  Identities=13%  Similarity=0.145  Sum_probs=48.3

Q ss_pred             EEeccccccCCh-HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            3 NCTLTILHDWND-EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         3 y~~~~vlH~~~d-~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      -++..+||+.+| ++...+++..+++|+|||.|+|.....+..+   ...+  ...+..-.. ...+..||.+|+.++| 
T Consensus       154 vll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p---~~~~--~~~~~~~~~-~~~~~~Rs~~ei~~~f-  226 (267)
T PF04672_consen  154 VLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP---ERAE--ALEAVYAQA-GSPGRPRSREEIAAFF-  226 (267)
T ss_dssp             EEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH---HHHH--HHHHHHHHC-CS----B-HHHHHHCC-
T ss_pred             eeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH---HHHH--HHHHHHHcC-CCCceecCHHHHHHHc-
Confidence            478889999998 6799999999999999999999998664332   1111  111111111 2357889999999999 


Q ss_pred             hCCCCceE
Q 043826           82 GAGFSGMS   89 (104)
Q Consensus        82 ~aGf~~~~   89 (104)
                       .||+.++
T Consensus       227 -~g~elve  233 (267)
T PF04672_consen  227 -DGLELVE  233 (267)
T ss_dssp             -TTSEE-T
T ss_pred             -CCCccCC
Confidence             5988663

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK08317 hypothetical protein; Provisional

Probab=98.14  E-value=2.4e-05  Score=51.92  Aligned_cols=85  Identities=12%  Similarity=0.129  Sum_probs=52.5

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-CCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVP-NTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~-~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      +..+++|+++|.  ..+++++++.|+|||++++.+...+... .+............  ... .....++..++.+++++
T Consensus        92 ~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~l~~  166 (241)
T PRK08317         92 RSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNF--WSD-HFADPWLGRRLPGLFRE  166 (241)
T ss_pred             EEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHH--HHh-cCCCCcHHHHHHHHHHH
Confidence            456788999875  6789999999999999999885322110 00000000011111  110 12233566789999999


Q ss_pred             CCCCceEEEEe
Q 043826           83 AGFSGMSCERA   93 (104)
Q Consensus        83 aGf~~~~~~~~   93 (104)
                      +||+.+++...
T Consensus       167 aGf~~~~~~~~  177 (241)
T PRK08317        167 AGLTDIEVEPY  177 (241)
T ss_pred             cCCCceeEEEE
Confidence            99998866543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.02  E-value=2.3e-05  Score=57.74  Aligned_cols=72  Identities=10%  Similarity=0.024  Sum_probs=54.8

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhC
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGA   83 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~a   83 (104)
                      +...++|+++|++..++|+++++.|+|||++++.|.........         .+   .  ......|+..+|.+++.++
T Consensus       108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~---------~~---~--~~~~~~~~~~~~~~~f~~~  173 (475)
T PLN02336        108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS---------KR---K--NNPTHYREPRFYTKVFKEC  173 (475)
T ss_pred             ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc---------cc---c--CCCCeecChHHHHHHHHHh
Confidence            34568999999989999999999999999999999765432111         00   0  1234557888999999999


Q ss_pred             CCCceE
Q 043826           84 GFSGMS   89 (104)
Q Consensus        84 Gf~~~~   89 (104)
                      ||....
T Consensus       174 ~~~~~~  179 (475)
T PLN02336        174 HTRDED  179 (475)
T ss_pred             eeccCC
Confidence            998764

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.01  E-value=6.8e-05  Score=49.41  Aligned_cols=70  Identities=13%  Similarity=0.078  Sum_probs=49.6

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhC
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGA   83 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~a   83 (104)
                      +...++|++++++..+++++++++|+|||++++.+.+.+++...+  .    -.          -...+.+|+.++++  
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~--~----~~----------~~~~~~~el~~~~~--  161 (197)
T PRK11207        100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT--V----GF----------PFAFKEGELRRYYE--  161 (197)
T ss_pred             EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC--C----CC----------CCccCHHHHHHHhC--
Confidence            445688988988899999999999999999888776554331100  0    00          01247889999996  


Q ss_pred             CCCceEEE
Q 043826           84 GFSGMSCE   91 (104)
Q Consensus        84 Gf~~~~~~   91 (104)
                      ||+.+...
T Consensus       162 ~~~~~~~~  169 (197)
T PRK11207        162 GWEMVKYN  169 (197)
T ss_pred             CCeEEEee
Confidence            89877653

>TIGR00477 tehB tellurite resistance protein TehB

Probab=97.90  E-value=0.00016  Score=47.53  Aligned_cols=70  Identities=7%  Similarity=0.002  Sum_probs=49.2

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhC
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGA   83 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~a   83 (104)
                      +...++|++++++...+++++++.|+|||++++.+...++.. +..       ..        .....+.+|+.+++.  
T Consensus        99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~-~~~-------~~--------~~~~~~~~el~~~f~--  160 (195)
T TIGR00477        99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADY-PCH-------MP--------FSFTFKEDELRQYYA--  160 (195)
T ss_pred             EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCC-CCC-------CC--------cCccCCHHHHHHHhC--
Confidence            345678999888889999999999999999888876543221 100       00        011257889999994  


Q ss_pred             CCCceEEE
Q 043826           84 GFSGMSCE   91 (104)
Q Consensus        84 Gf~~~~~~   91 (104)
                      +|++....
T Consensus       161 ~~~~~~~~  168 (195)
T TIGR00477       161 DWELLKYN  168 (195)
T ss_pred             CCeEEEee
Confidence            68877665

Part of a tellurite-reducing operon tehA and tehB

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.82  E-value=7.8e-05  Score=49.95  Aligned_cols=84  Identities=14%  Similarity=0.109  Sum_probs=51.1

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchh--hhhhhhhhhc--CCCceecCHHHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSN--FHFDVLMMIQ--RPDGKERTRHEFMT   78 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~--~~~~l~m~~~--~~~g~~rt~~e~~~   78 (104)
                      .++.+++++.++.  ..+|+++.+.|+|||++++....  ..  ........  ...-......  ...+...+.++|.+
T Consensus       118 Ii~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~v~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (233)
T PRK05134        118 VTCMEMLEHVPDP--ASFVRACAKLVKPGGLVFFSTLN--RN--LKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAA  191 (233)
T ss_pred             EEEhhHhhccCCH--HHHHHHHHHHcCCCcEEEEEecC--CC--hHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHH
Confidence            3556778888775  57899999999999999877532  11  10000000  0000000000  00123458899999


Q ss_pred             HHHhCCCCceEEEE
Q 043826           79 LATGAGFSGMSCER   92 (104)
Q Consensus        79 ll~~aGf~~~~~~~   92 (104)
                      +++++||+.++...
T Consensus       192 ~l~~~Gf~~v~~~~  205 (233)
T PRK05134        192 WLRQAGLEVQDITG  205 (233)
T ss_pred             HHHHCCCeEeeeee
Confidence            99999999997754

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.80  E-value=3.1e-05  Score=53.68  Aligned_cols=85  Identities=12%  Similarity=0.163  Sum_probs=54.5

Q ss_pred             cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCC
Q 043826            7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFS   86 (104)
Q Consensus         7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~   86 (104)
                      .++.+.+++.-...++++.+.|+|||++++.....++.+..........++.-.   .+++|...+.+++...++++||+
T Consensus       135 ~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~ky---iFPgg~lps~~~~~~~~~~~~l~  211 (273)
T PF02353_consen  135 EMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKY---IFPGGYLPSLSEILRAAEDAGLE  211 (273)
T ss_dssp             SEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHH---TSTTS---BHHHHHHHHHHTT-E
T ss_pred             echhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEe---eCCCCCCCCHHHHHHHHhcCCEE
Confidence            456777777788999999999999999999887765432110000000111111   24788889999999999999999


Q ss_pred             ceEEEEeC
Q 043826           87 GMSCERAI   94 (104)
Q Consensus        87 ~~~~~~~~   94 (104)
                      +..+...+
T Consensus       212 v~~~~~~~  219 (273)
T PF02353_consen  212 VEDVENLG  219 (273)
T ss_dssp             EEEEEE-H
T ss_pred             EEEEEEcC
Confidence            98877653

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.78  E-value=7.9e-05  Score=49.50  Aligned_cols=82  Identities=12%  Similarity=0.120  Sum_probs=51.1

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhh-cCC-----CceecCHHHHH
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMI-QRP-----DGKERTRHEFM   77 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~-~~~-----~g~~rt~~e~~   77 (104)
                      +..+++|+.++.  ..+|+++.+.|+|||.+++.....+.   ...   .....+-.... ..+     .....+..++.
T Consensus       117 ~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  188 (224)
T TIGR01983       117 TCMEVLEHVPDP--QAFIRACAQLLKPGGILFFSTINRTP---KSY---LLAIVGAEYILRIVPKGTHDWEKFIKPSELT  188 (224)
T ss_pred             EehhHHHhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCc---hHH---HHHHHhhhhhhhcCCCCcCChhhcCCHHHHH
Confidence            456678888776  58999999999999999887642111   000   00000000010 000     11234788999


Q ss_pred             HHHHhCCCCceEEEEe
Q 043826           78 TLATGAGFSGMSCERA   93 (104)
Q Consensus        78 ~ll~~aGf~~~~~~~~   93 (104)
                      ++++++||+++++...
T Consensus       189 ~~l~~~G~~i~~~~~~  204 (224)
T TIGR01983       189 SWLESAGLRVKDVKGL  204 (224)
T ss_pred             HHHHHcCCeeeeeeeE
Confidence            9999999999887643

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.56  E-value=0.0005  Score=48.40  Aligned_cols=79  Identities=19%  Similarity=0.266  Sum_probs=55.4

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCc--ccchhhhhhhhhhhcCCC-ceecCHHHHHHHH
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSI--ESKSNFHFDVLMMIQRPD-GKERTRHEFMTLA   80 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~--~~~~~~~~~l~m~~~~~~-g~~rt~~e~~~ll   80 (104)
                      ++-.||.|..++  ...|+.++++|+|||.+++--.+++.+.....  ..+++     . |   .| -..-|...+..|+
T Consensus       187 F~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa-----~-m---~nv~FiPs~~~L~~wl  255 (315)
T PF08003_consen  187 FSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYA-----K-M---RNVWFIPSVAALKNWL  255 (315)
T ss_pred             EEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCccc-----C-C---CceEEeCCHHHHHHHH
Confidence            445678787776  89999999999999999776666665432210  11110     1 1   12 2345899999999


Q ss_pred             HhCCCCceEEEEe
Q 043826           81 TGAGFSGMSCERA   93 (104)
Q Consensus        81 ~~aGf~~~~~~~~   93 (104)
                      +.+||+.+++...
T Consensus       256 ~r~gF~~v~~v~~  268 (315)
T PF08003_consen  256 ERAGFKDVRCVDV  268 (315)
T ss_pred             HHcCCceEEEecC
Confidence            9999999999875

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=97.54  E-value=0.00012  Score=50.40  Aligned_cols=37  Identities=14%  Similarity=0.154  Sum_probs=33.3

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      .+.+++||++++++..+++++++++|+|||.+++-..
T Consensus       207 I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~  243 (264)
T smart00138      207 IFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS  243 (264)
T ss_pred             EEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence            4567899999999999999999999999999998764

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=97.53  E-value=0.001  Score=46.28  Aligned_cols=69  Identities=16%  Similarity=0.094  Sum_probs=49.1

Q ss_pred             eccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826            5 TLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG   84 (104)
Q Consensus         5 ~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG   84 (104)
                      ...++|+.++++...+++++.+.|+|||.++++.....++...+        .        +.....+.+|+.+++  .+
T Consensus       190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~--------~--------p~~~~~~~~el~~~~--~~  251 (287)
T PRK12335        190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP--------M--------PFSFTFKEGELKDYY--QD  251 (287)
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC--------C--------CCCcccCHHHHHHHh--CC
Confidence            44589999988899999999999999999888765543321111        0        011225788999999  56


Q ss_pred             CCceEEE
Q 043826           85 FSGMSCE   91 (104)
Q Consensus        85 f~~~~~~   91 (104)
                      |++++..
T Consensus       252 ~~i~~~~  258 (287)
T PRK12335        252 WEIVKYN  258 (287)
T ss_pred             CEEEEEe
Confidence            8888764

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.53  E-value=0.00026  Score=48.30  Aligned_cols=82  Identities=16%  Similarity=0.154  Sum_probs=54.7

Q ss_pred             cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCce--ecCHHHHHHHHHhCC
Q 043826            7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGK--ERTRHEFMTLATGAG   84 (104)
Q Consensus         7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~--~rt~~e~~~ll~~aG   84 (104)
                      .+|-..+.+.-...++++++.|+|||.|++.|.-..+-..-.  ......++.+..+--+|.+  -.+.++.++||.+||
T Consensus       152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR--F~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag  229 (264)
T KOG2361|consen  152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR--FKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAG  229 (264)
T ss_pred             EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh--ccCCceeecceEEccCCceeeeccHHHHHHHHHhcc
Confidence            455566778889999999999999999999998654331100  0001223333333222222  258999999999999


Q ss_pred             CCceEE
Q 043826           85 FSGMSC   90 (104)
Q Consensus        85 f~~~~~   90 (104)
                      |..++.
T Consensus       230 f~~~~~  235 (264)
T KOG2361|consen  230 FEEVQL  235 (264)
T ss_pred             cchhcc
Confidence            997754

>PRK06922 hypothetical protein; Provisional

Probab=97.48  E-value=0.0002  Score=54.99  Aligned_cols=43  Identities=26%  Similarity=0.390  Sum_probs=35.6

Q ss_pred             EEEeccccccC-----------ChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 043826            2 INCTLTILHDW-----------NDEHCLKLLKNCYKSIPEDGKVIVVELMLPEV   44 (104)
Q Consensus         2 ~y~~~~vlH~~-----------~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~   44 (104)
                      +++++.++|+|           ++++..++|++++++|+|||++++.|...+++
T Consensus       490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~E~  543 (677)
T PRK06922        490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMTED  543 (677)
T ss_pred             EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccCCc
Confidence            35678889986           35678999999999999999999999766543

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.41  E-value=0.00075  Score=45.32  Aligned_cols=76  Identities=25%  Similarity=0.206  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccch-hhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEe
Q 043826           15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKS-NFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERA   93 (104)
Q Consensus        15 ~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~-~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~   93 (104)
                      ++.++.|+++.+.|+|||+++.+|.+..+...-   .+. ....+-.--. ...|...|.+.|+ .+++|-|+..+..+.
T Consensus       159 e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~---n~i~q~v~ep~~~~-~~dGC~ltrd~~e-~Leda~f~~~~~kr~  233 (252)
T KOG4300|consen  159 EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFW---NRILQQVAEPLWHL-ESDGCVLTRDTGE-LLEDAEFSIDSCKRF  233 (252)
T ss_pred             CCHHHHHHHHHHhcCCCcEEEEEecccccchHH---HHHHHHHhchhhhe-eccceEEehhHHH-Hhhhcccccchhhcc
Confidence            446999999999999999999999987655321   111 0111110011 2368888885554 566799999988877


Q ss_pred             CC
Q 043826           94 IG   95 (104)
Q Consensus        94 ~~   95 (104)
                      ..
T Consensus       234 ~~  235 (252)
T KOG4300|consen  234 NF  235 (252)
T ss_pred             cC
Confidence            54

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.40  E-value=0.00011  Score=41.81  Aligned_cols=32  Identities=19%  Similarity=0.432  Sum_probs=27.5

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIV   36 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i   36 (104)
                      .+..+++|++  ++..++++++++.|+|||+++|
T Consensus        64 v~~~~~~~~~--~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   64 VFSNSVLHHL--EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             EEEESHGGGS--SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccceeec--cCHHHHHHHHHHHcCcCeEEeC
Confidence            4667788888  5568999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.35  E-value=0.0014  Score=47.52  Aligned_cols=80  Identities=6%  Similarity=0.022  Sum_probs=55.5

Q ss_pred             ccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCC
Q 043826            6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGF   85 (104)
Q Consensus         6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf   85 (104)
                      ..++|+.++.....+++++++.|+|||++++.+...+.......     ...+-  . .+++|...+.+++.+.++ .||
T Consensus       235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~-----~~i~~--y-ifp~g~lps~~~i~~~~~-~~~  305 (383)
T PRK11705        235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVD-----PWINK--Y-IFPNGCLPSVRQIAQASE-GLF  305 (383)
T ss_pred             eCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCC-----CCcee--e-ecCCCcCCCHHHHHHHHH-CCc
Confidence            45778888877789999999999999999998865443321110     11111  1 135777788999888866 689


Q ss_pred             CceEEEEeC
Q 043826           86 SGMSCERAI   94 (104)
Q Consensus        86 ~~~~~~~~~   94 (104)
                      .+.++...+
T Consensus       306 ~v~d~~~~~  314 (383)
T PRK11705        306 VMEDWHNFG  314 (383)
T ss_pred             EEEEEecCh
Confidence            888776544

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.33  E-value=0.00078  Score=46.99  Aligned_cols=80  Identities=19%  Similarity=0.267  Sum_probs=60.2

Q ss_pred             ccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCc
Q 043826            8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSG   87 (104)
Q Consensus         8 vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~   87 (104)
                      ++++...+.-...++++++.|+|||+++++....++.+.. .   ...+..   --.+++|...|..+..+...++||.+
T Consensus       146 mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~---~~~~i~---~yiFPgG~lPs~~~i~~~~~~~~~~v  218 (283)
T COG2230         146 MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-R---FPDFID---KYIFPGGELPSISEILELASEAGFVV  218 (283)
T ss_pred             hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-c---chHHHH---HhCCCCCcCCCHHHHHHHHHhcCcEE
Confidence            5667777777899999999999999999999877665431 1   111111   11257999999999999999999999


Q ss_pred             eEEEEeC
Q 043826           88 MSCERAI   94 (104)
Q Consensus        88 ~~~~~~~   94 (104)
                      ..+...+
T Consensus       219 ~~~~~~~  225 (283)
T COG2230         219 LDVESLR  225 (283)
T ss_pred             ehHhhhc
Confidence            8776654

>PRK06202 hypothetical protein; Provisional

Probab=97.31  E-value=0.0013  Score=44.15  Aligned_cols=83  Identities=17%  Similarity=0.149  Sum_probs=51.2

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhh---hcCCC-----ceecCHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMM---IQRPD-----GKERTRH   74 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~---~~~~~-----g~~rt~~   74 (104)
                      .+...++|+.+|++..++|+++++.++  |.+++.|...+..   . .. ..........   ....+     -+.+|.+
T Consensus       133 V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~---~-~~-~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~  205 (232)
T PRK06202        133 VTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL---A-YA-LFWAGTRLLSRSSFVHTDGLLSVRRSYTPA  205 (232)
T ss_pred             EEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH---H-HH-HHHHHHHHhccCceeeccchHHHHhhcCHH
Confidence            456779999999988899999999987  5666666543311   0 00 0000000000   00001     1357899


Q ss_pred             HHHHHHHhCCCCceEEEEe
Q 043826           75 EFMTLATGAGFSGMSCERA   93 (104)
Q Consensus        75 e~~~ll~~aGf~~~~~~~~   93 (104)
                      |+.+++++ ||++....+.
T Consensus       206 el~~ll~~-Gf~~~~~~~~  223 (232)
T PRK06202        206 ELAALAPQ-GWRVERQWPF  223 (232)
T ss_pred             HHHHHhhC-CCeEEeccce
Confidence            99999999 9998876644

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.27  E-value=0.0019  Score=42.92  Aligned_cols=81  Identities=14%  Similarity=0.175  Sum_probs=49.6

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhh-h----hcCCCceecCHHHHHH
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLM-M----IQRPDGKERTRHEFMT   78 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m-~----~~~~~g~~rt~~e~~~   78 (104)
                      +...++|++++++...+++++.+.++ |+.++..   .+..+  ..     ....... .    .........+.++|.+
T Consensus       132 ~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~~---~~~~~--~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  200 (230)
T PRK07580        132 VCLDVLIHYPQEDAARMLAHLASLTR-GSLIFTF---APYTP--LL-----ALLHWIGGLFPGPSRTTRIYPHREKGIRR  200 (230)
T ss_pred             EEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEEE---CCccH--HH-----HHHHHhccccCCccCCCCccccCHHHHHH
Confidence            45678889999999999999998664 3333332   12111  00     0011000 0    0011234468899999


Q ss_pred             HHHhCCCCceEEEEeCC
Q 043826           79 LATGAGFSGMSCERAIG   95 (104)
Q Consensus        79 ll~~aGf~~~~~~~~~~   95 (104)
                      +++++||++.++.....
T Consensus       201 ~l~~~Gf~~~~~~~~~~  217 (230)
T PRK07580        201 ALAAAGFKVVRTERISS  217 (230)
T ss_pred             HHHHCCCceEeeeeccc
Confidence            99999999999887653

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=97.16  E-value=0.0031  Score=41.81  Aligned_cols=75  Identities=12%  Similarity=0.042  Sum_probs=49.3

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|+.+|.  .++|+++++.|+|||.+++.+...+..   ...   .....-      .+....+.++|.+++.+
T Consensus       102 vi~~~~l~~~~~~--~~~l~~~~~~L~~~G~l~~~~~~~~~~---~~~---~~~~~~------~~~~~~~~~~~~~~l~~  167 (240)
T TIGR02072       102 IVSNLALQWCDDL--SQALSELARVLKPGGLLAFSTFGPGTL---HEL---RQSFGQ------HGLRYLSLDELKALLKN  167 (240)
T ss_pred             EEEhhhhhhccCH--HHHHHHHHHHcCCCcEEEEEeCCccCH---HHH---HHHHHH------hccCCCCHHHHHHHHHH
Confidence            3456678877664  689999999999999999886433211   000   001110      13445688999999998


Q ss_pred             CCCCceEEEE
Q 043826           83 AGFSGMSCER   92 (104)
Q Consensus        83 aGf~~~~~~~   92 (104)
                      + |+...+..
T Consensus       168 ~-f~~~~~~~  176 (240)
T TIGR02072       168 S-FELLTLEE  176 (240)
T ss_pred             h-cCCcEEEE
Confidence            8 88776543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PTZ00146 fibrillarin; Provisional

Probab=97.13  E-value=0.0064  Score=42.70  Aligned_cols=75  Identities=12%  Similarity=-0.013  Sum_probs=44.3

Q ss_pred             ccccCChH-HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCC
Q 043826            8 ILHDWNDE-HCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFS   86 (104)
Q Consensus         8 vlH~~~d~-~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~   86 (104)
                      |++|..+. +...++.++.+.|+|||+++|.- -..+....         .+....        .+ +|. ++|+++||+
T Consensus       206 V~~Dva~pdq~~il~~na~r~LKpGG~~vI~i-ka~~id~g---------~~pe~~--------f~-~ev-~~L~~~GF~  265 (293)
T PTZ00146        206 IFADVAQPDQARIVALNAQYFLKNGGHFIISI-KANCIDST---------AKPEVV--------FA-SEV-QKLKKEGLK  265 (293)
T ss_pred             EEEeCCCcchHHHHHHHHHHhccCCCEEEEEE-eccccccC---------CCHHHH--------HH-HHH-HHHHHcCCc
Confidence            34444433 35567779999999999999931 11111100         000000        12 345 889999999


Q ss_pred             ceEEEEeCC---CeEEEEE
Q 043826           87 GMSCERAIG---NLWVMEF  102 (104)
Q Consensus        87 ~~~~~~~~~---~~~vie~  102 (104)
                      .++...+.+   .++++.+
T Consensus       266 ~~e~v~L~Py~~~h~~v~~  284 (293)
T PTZ00146        266 PKEQLTLEPFERDHAVVIG  284 (293)
T ss_pred             eEEEEecCCccCCcEEEEE
Confidence            999988864   4555544

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.13  E-value=0.0014  Score=46.36  Aligned_cols=80  Identities=11%  Similarity=0.099  Sum_probs=46.2

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCC------ceecCHHHHH
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD------GKERTRHEFM   77 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~------g~~rt~~e~~   77 (104)
                      +...++||++++....+++++.+ +.+| .++|..  .+...   ..    ..+.. ..-.+++      ....+.++++
T Consensus       217 v~~~vL~H~p~~~~~~ll~~l~~-l~~g-~liIs~--~p~~~---~~----~~l~~-~g~~~~g~~~~~r~y~~s~eel~  284 (315)
T PLN02585        217 TCLDVLIHYPQDKADGMIAHLAS-LAEK-RLIISF--APKTL---YY----DILKR-IGELFPGPSKATRAYLHAEADVE  284 (315)
T ss_pred             EEcCEEEecCHHHHHHHHHHHHh-hcCC-EEEEEe--CCcch---HH----HHHHH-HHhhcCCCCcCceeeeCCHHHHH
Confidence            45668888999888888988885 4554 444422  22211   00    00000 0000111      1234899999


Q ss_pred             HHHHhCCCCceEEEEeCC
Q 043826           78 TLATGAGFSGMSCERAIG   95 (104)
Q Consensus        78 ~ll~~aGf~~~~~~~~~~   95 (104)
                      ++++++||++.+......
T Consensus       285 ~lL~~AGf~v~~~~~~~~  302 (315)
T PLN02585        285 RALKKAGWKVARREMTAT  302 (315)
T ss_pred             HHHHHCCCEEEEEEEeec
Confidence            999999999886655443

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.12  E-value=0.0044  Score=43.50  Aligned_cols=92  Identities=15%  Similarity=0.147  Sum_probs=58.7

Q ss_pred             EEeccccccCChHH-HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCC-----ceecCHHHH
Q 043826            3 NCTLTILHDWNDEH-CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD-----GKERTRHEF   76 (104)
Q Consensus         3 y~~~~vlH~~~d~~-~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~-----g~~rt~~e~   76 (104)
                      -+.+-+.--++|.+ ....|+.+++++.|||.++-.-.-.  .|.-..++     .-+  .. .-+     -+.||.+|.
T Consensus       213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw--HPQle~IA-----r~L--ts-Hr~g~~WvMRrRsq~Em  282 (311)
T PF12147_consen  213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPW--HPQLEMIA-----RVL--TS-HRDGKAWVMRRRSQAEM  282 (311)
T ss_pred             EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC--CcchHHHH-----HHH--hc-ccCCCceEEEecCHHHH
Confidence            35566677788876 5668999999999999997655322  22111111     111  10 001     256999999


Q ss_pred             HHHHHhCCCCceEEEEe-CCCeEEEEEEC
Q 043826           77 MTLATGAGFSGMSCERA-IGNLWVMEFYK  104 (104)
Q Consensus        77 ~~ll~~aGf~~~~~~~~-~~~~~vie~~~  104 (104)
                      .+|+++|||+-++..-- .+-++|--++|
T Consensus       283 D~Lv~~aGF~K~~q~ID~~GIFTVSlA~r  311 (311)
T PF12147_consen  283 DQLVEAAGFEKIDQRIDEWGIFTVSLARR  311 (311)
T ss_pred             HHHHHHcCCchhhheeccCCceEEEeecC
Confidence            99999999996654433 35677766654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PLN03075 nicotianamine synthase; Provisional

Probab=97.10  E-value=0.00065  Score=47.68  Aligned_cols=35  Identities=14%  Similarity=0.204  Sum_probs=30.4

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      +|.+++|+|+.++..++|+++++.|+|||.+++--
T Consensus       199 VF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        199 VFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             EEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            45559999988888999999999999999997654

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=97.08  E-value=0.0021  Score=42.74  Aligned_cols=83  Identities=8%  Similarity=-0.039  Sum_probs=49.3

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhh--cCCCceecCHHHHHHHHH
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMI--QRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~--~~~~g~~rt~~e~~~ll~   81 (104)
                      +...++|++++++..++++++.+.+++++.+.+    .+..  . .... ...+.-....  ...+-..++.+++.++++
T Consensus       124 i~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~----~~~~--~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  195 (219)
T TIGR02021       124 VCMDVLIHYPASDMAKALGHLASLTKERVIFTF----APKT--A-WLAF-LKMIGELFPGSSRATSAYLHPMTDLERALG  195 (219)
T ss_pred             EEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE----CCCc--h-HHHH-HHHHHhhCcCcccccceEEecHHHHHHHHH
Confidence            445678889888888999999998876533322    1211  1 0000 0011100000  001224468999999999


Q ss_pred             hCCCCceEEEEeC
Q 043826           82 GAGFSGMSCERAI   94 (104)
Q Consensus        82 ~aGf~~~~~~~~~   94 (104)
                      ++||+++......
T Consensus       196 ~~Gf~v~~~~~~~  208 (219)
T TIGR02021       196 ELGWKIVREGLVS  208 (219)
T ss_pred             HcCceeeeeeccc
Confidence            9999999887654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=97.06  E-value=0.00017  Score=45.36  Aligned_cols=76  Identities=17%  Similarity=0.135  Sum_probs=46.4

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|+.++.  ..+++++.+.|+|||++++.+....+.-.. ....... +..........+.  +.++|..|+++
T Consensus        77 I~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~  150 (152)
T PF13847_consen   77 IISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPNHNDELPE-QLEELMN-LYSEVWSMIYIGN--DKEEWKYILEE  150 (152)
T ss_dssp             EEEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEEHSHHHHH-HHHHHHH-HHHHHHHHCC-----CCCGHHHHHHH
T ss_pred             EEEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEECChHHHHHH-HHHHHHH-HHHHHhhhhhccc--CHHHHHHHHHh
Confidence            3456688999887  689999999999999999999873221000 0000000 1111111111122  78899999999


Q ss_pred             CC
Q 043826           83 AG   84 (104)
Q Consensus        83 aG   84 (104)
                      ||
T Consensus       151 ag  152 (152)
T PF13847_consen  151 AG  152 (152)
T ss_dssp             TT
T ss_pred             cC
Confidence            98

...

>PRK05785 hypothetical protein; Provisional

Probab=97.04  E-value=0.0052  Score=41.41  Aligned_cols=93  Identities=10%  Similarity=-0.004  Sum_probs=54.7

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhh---hhhhh--hcCCCc----------
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHF---DVLMM--IQRPDG----------   68 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~---~l~m~--~~~~~g----------   68 (104)
                      +....||+++|.  .+.|+++++.|+|  .++++|...|+.+-   .......+   .+..+  ....+.          
T Consensus       115 ~~~~~l~~~~d~--~~~l~e~~RvLkp--~~~ile~~~p~~~~---~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si  187 (226)
T PRK05785        115 MSSFALHASDNI--EKVIAEFTRVSRK--QVGFIAMGKPDNVI---KRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIY  187 (226)
T ss_pred             EecChhhccCCH--HHHHHHHHHHhcC--ceEEEEeCCCCcHH---HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            445678998876  6899999999999  45567765443321   00000000   00000  011111          


Q ss_pred             -eecCHHHHHHHHHhCCCCceEEEEeC-CCeEEEEEEC
Q 043826           69 -KERTRHEFMTLATGAGFSGMSCERAI-GNLWVMEFYK  104 (104)
Q Consensus        69 -~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~  104 (104)
                       ...+.+++.++++++| ..++..... +..++..++|
T Consensus       188 ~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k  224 (226)
T PRK05785        188 ERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS  224 (226)
T ss_pred             HHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence             2237799999999984 667777765 5567777665

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.03  E-value=0.0063  Score=39.24  Aligned_cols=59  Identities=14%  Similarity=0.040  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeCCC
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAIGN   96 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~   96 (104)
                      ..++|+++.+.|+|||++++++....                             ...++.++++++||+...+...+.+
T Consensus       119 ~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~~~~~~~l~~~gf~~~~~~~~~~~  169 (179)
T TIGR00537       119 IDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GEPDTFDKLDERGFRYEIVAERGLF  169 (179)
T ss_pred             HHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------ChHHHHHHHHhCCCeEEEEEEeecC
Confidence            46789999999999999999873221                             1457788999999999999888877


Q ss_pred             eEEEEEEC
Q 043826           97 LWVMEFYK  104 (104)
Q Consensus        97 ~~vie~~~  104 (104)
                      +--++++|
T Consensus       170 ~~~~~~~~  177 (179)
T TIGR00537       170 FEELFAIK  177 (179)
T ss_pred             ceEEEEEE
Confidence            77777665

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.98  E-value=0.00093  Score=46.74  Aligned_cols=37  Identities=8%  Similarity=0.115  Sum_probs=32.5

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      -+.+|+|.+++++...+++++++++|+|||.|++-..
T Consensus       227 I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s  263 (287)
T PRK10611        227 IFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS  263 (287)
T ss_pred             eeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence            3567899999999999999999999999998877653

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=96.89  E-value=0.0071  Score=41.10  Aligned_cols=80  Identities=11%  Similarity=0.032  Sum_probs=45.6

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchh-----hhhhhhhhhc-CCCceecCHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSN-----FHFDVLMMIQ-RPDGKERTRHEF   76 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~-----~~~~l~m~~~-~~~g~~rt~~e~   76 (104)
                      .+...++|..+|.  .+++++++++|+|||++++.-   +++...+......     ..+...+... ...+...+..++
T Consensus        97 v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  171 (258)
T PRK01683         97 IFANASLQWLPDH--LELFPRLVSLLAPGGVLAVQM---PDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAY  171 (258)
T ss_pred             EEEccChhhCCCH--HHHHHHHHHhcCCCcEEEEEC---CCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHH
Confidence            3456788877775  689999999999999998852   2222111100000     0001000000 001233577899


Q ss_pred             HHHHHhCCCCc
Q 043826           77 MTLATGAGFSG   87 (104)
Q Consensus        77 ~~ll~~aGf~~   87 (104)
                      .+++.++|+.+
T Consensus       172 ~~~l~~~g~~v  182 (258)
T PRK01683        172 YDALAPAACRV  182 (258)
T ss_pred             HHHHHhCCCce
Confidence            99999999864

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.64  E-value=0.0017  Score=43.00  Aligned_cols=38  Identities=13%  Similarity=0.196  Sum_probs=31.9

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      +-+.+|||-.++++...+++++++++|+|||.|++-..
T Consensus       139 ~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s  176 (196)
T PF01739_consen  139 LIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS  176 (196)
T ss_dssp             EEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred             EEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence            34789999999999999999999999999999988764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=96.58  E-value=0.0032  Score=37.11  Aligned_cols=31  Identities=13%  Similarity=0.256  Sum_probs=25.5

Q ss_pred             ccccCCh-HHHHHHHHHHHhhCCCCCEEEEEe
Q 043826            8 ILHDWND-EHCLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus         8 vlH~~~d-~~~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      .+|++.+ ++..++|+++++.|+|||+++|.+
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            4554544 578999999999999999999875

...

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.57  E-value=0.034  Score=37.22  Aligned_cols=67  Identities=10%  Similarity=0.045  Sum_probs=46.3

Q ss_pred             ccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-CCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826            6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVP-NTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG   84 (104)
Q Consensus         6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~-~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG   84 (104)
                      +.++|+.+.+.....++++.++|+|||++++.-...++.. .+|+                   ...+.+|+.++|. .+
T Consensus       120 ~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp-------------------~~~~~~eL~~~f~-~~  179 (213)
T TIGR03840       120 RAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPP-------------------FSVSPAEVEALYG-GH  179 (213)
T ss_pred             chhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcC-------------------CCCCHHHHHHHhc-CC
Confidence            4567899999889999999999999999877765443221 1110                   1247888988886 35


Q ss_pred             CCceEEEE
Q 043826           85 FSGMSCER   92 (104)
Q Consensus        85 f~~~~~~~   92 (104)
                      |.+..+..
T Consensus       180 ~~i~~~~~  187 (213)
T TIGR03840       180 YEIELLES  187 (213)
T ss_pred             ceEEEEee
Confidence            65554443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.41  E-value=0.04  Score=37.55  Aligned_cols=57  Identities=14%  Similarity=0.153  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC
Q 043826           15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI   94 (104)
Q Consensus        15 ~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~   94 (104)
                      +....+++++.+.|+|||++++.+...+                             ..+++.+.+++.||+..++...+
T Consensus       190 ~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~~~~  240 (250)
T PRK00517        190 NPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEAYEEAGFTLDEVLERG  240 (250)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHHHHHCCCEEEEEEEeC
Confidence            4456889999999999999998643211                             24577888999999999887776


Q ss_pred             CCeEEE
Q 043826           95 GNLWVM  100 (104)
Q Consensus        95 ~~~~vi  100 (104)
                      ...+++
T Consensus       241 ~W~~~~  246 (250)
T PRK00517        241 EWVALV  246 (250)
T ss_pred             CEEEEE
Confidence            555554

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=96.36  E-value=0.0045  Score=41.11  Aligned_cols=38  Identities=13%  Similarity=0.153  Sum_probs=32.6

Q ss_pred             EEEeccccccCCh-HHHHHHHHHHHhhCCCCCEEEEEee
Q 043826            2 INCTLTILHDWND-EHCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus         2 ~y~~~~vlH~~~d-~~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      +.+++-|+|.++| ++....++++.++|+|||.+++...
T Consensus       109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  109 LIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             EEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            3567889999987 6789999999999999999999886

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.33  E-value=0.0077  Score=42.79  Aligned_cols=36  Identities=6%  Similarity=0.145  Sum_probs=33.2

Q ss_pred             CEEEeccccccCChHHHHHHHHHHHh-hCCCCCEEEE
Q 043826            1 CINCTLTILHDWNDEHCLKLLKNCYK-SIPEDGKVIV   36 (104)
Q Consensus         1 ~~y~~~~vlH~~~d~~~~~iL~~~~~-aL~pgg~l~i   36 (104)
                      +++++.+.+.+++++++..+|+++++ .|.||+.++|
T Consensus       159 ~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi  195 (319)
T TIGR03439       159 TILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI  195 (319)
T ss_pred             EEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence            47888999999999999999999999 9999988777

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=96.23  E-value=0.025  Score=39.11  Aligned_cols=76  Identities=18%  Similarity=0.244  Sum_probs=44.4

Q ss_pred             cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC------CCC--CCCcccchhhhhhhhhhhcCCCceecCHHHHHH
Q 043826            7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP------EVP--NTSIESKSNFHFDVLMMIQRPDGKERTRHEFMT   78 (104)
Q Consensus         7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~------~~~--~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~   78 (104)
                      |+|-.-.+  ...+|+.++++|+|+|++++.= +.|      .++  ..++.    ...++     .+.+-+-..+.+-+
T Consensus       159 NvLDRc~~--P~~LL~~i~~~l~p~G~lilAv-VlP~~pyVE~~~g~~~~P~----e~l~~-----~g~~~E~~v~~l~~  226 (265)
T PF05219_consen  159 NVLDRCDR--PLTLLRDIRRALKPNGRLILAV-VLPFRPYVEFGGGKSNRPS----ELLPV-----KGATFEEQVSSLVN  226 (265)
T ss_pred             hhhhccCC--HHHHHHHHHHHhCCCCEEEEEE-EecccccEEcCCCCCCCch----hhcCC-----CCCcHHHHHHHHHH
Confidence            45544434  4899999999999999997754 222      111  11111    11221     11111112233447


Q ss_pred             HHHhCCCCceEEEEeC
Q 043826           79 LATGAGFSGMSCERAI   94 (104)
Q Consensus        79 ll~~aGf~~~~~~~~~   94 (104)
                      .|+.+||++++..+++
T Consensus       227 v~~p~GF~v~~~tr~P  242 (265)
T PF05219_consen  227 VFEPAGFEVERWTRLP  242 (265)
T ss_pred             HHHhcCCEEEEEeccC
Confidence            8899999999998875

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=96.22  E-value=0.063  Score=36.07  Aligned_cols=67  Identities=16%  Similarity=0.109  Sum_probs=45.7

Q ss_pred             ccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC-CCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826            6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEV-PNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG   84 (104)
Q Consensus         6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~-~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG   84 (104)
                      +.++|+.+.+.-.+.++++.++|+|||+++++-...++. ..+|+                   ...|.+|+.+++. -+
T Consensus       123 ~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp-------------------~~~~~~el~~~~~-~~  182 (218)
T PRK13255        123 RAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPP-------------------FSVSDEEVEALYA-GC  182 (218)
T ss_pred             hHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCC-------------------CCCCHHHHHHHhc-CC
Confidence            456799999999999999999999999866544433322 11111                   1247889999985 33


Q ss_pred             CCceEEEE
Q 043826           85 FSGMSCER   92 (104)
Q Consensus        85 f~~~~~~~   92 (104)
                      |.+..+..
T Consensus       183 ~~i~~~~~  190 (218)
T PRK13255        183 FEIELLER  190 (218)
T ss_pred             ceEEEeee
Confidence            66665554

>PRK14968 putative methyltransferase; Provisional

Probab=96.21  E-value=0.065  Score=34.30  Aligned_cols=59  Identities=15%  Similarity=0.296  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC--
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI--   94 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~--   94 (104)
                      ...+++++.+.|+|||.+++...   ..                          ...+++.+++.++||+...+....  
T Consensus       127 ~~~~i~~~~~~Lk~gG~~~~~~~---~~--------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~  177 (188)
T PRK14968        127 IDRFLDEVGRYLKPGGRILLLQS---SL--------------------------TGEDEVLEYLEKLGFEAEVVAEEKFP  177 (188)
T ss_pred             HHHHHHHHHHhcCCCeEEEEEEc---cc--------------------------CCHHHHHHHHHHCCCeeeeeeecccC
Confidence            46789999999999999887531   00                          123567889999999988765543  


Q ss_pred             -CCeEEEEEEC
Q 043826           95 -GNLWVMEFYK  104 (104)
Q Consensus        95 -~~~~vie~~~  104 (104)
                       ....+++++|
T Consensus       178 ~~~~~~~~~~~  188 (188)
T PRK14968        178 FEELIVLELVK  188 (188)
T ss_pred             CceEEEEEEeC
Confidence             3344555554

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.16  E-value=0.027  Score=37.65  Aligned_cols=65  Identities=12%  Similarity=0.082  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEe
Q 043826           14 DEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERA   93 (104)
Q Consensus        14 d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~   93 (104)
                      ...+.++-+.++++|+|||.++|.|.........         .|-.      --..++.+-..+-.+.+||+..-...+
T Consensus       142 ~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~---------~dt~------~~~ri~~a~V~a~veaaGFkl~aeS~i  206 (238)
T COG4798         142 PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGL---------SDTI------TLHRIDPAVVIAEVEAAGFKLEAESEI  206 (238)
T ss_pred             cchHHHHHHHHHHhcCCCcEEEEEeccccCCCCh---------hhhh------hhcccChHHHHHHHHhhcceeeeeehh
Confidence            4568899999999999999999999987654221         1110      011145678888899999998755544

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=96.11  E-value=0.032  Score=37.79  Aligned_cols=72  Identities=10%  Similarity=0.046  Sum_probs=43.5

Q ss_pred             cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCC
Q 043826            7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFS   86 (104)
Q Consensus         7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~   86 (104)
                      ..+|..+|.  .++|+++++.|+|||.+++.....+.-   ++........+.  .  .......+.+++.+++.+.|++
T Consensus       111 ~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~---~el~~~~~~~~~--~--~~~~~~~~~~~l~~~l~~~~~~  181 (251)
T PRK10258        111 LAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQGSL---PELHQAWQAVDE--R--PHANRFLPPDAIEQALNGWRYQ  181 (251)
T ss_pred             chhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCCCch---HHHHHHHHHhcc--C--CccccCCCHHHHHHHHHhCCce
Confidence            355544453  789999999999999999877543221   111100000110  0  0012346889999999988876


Q ss_pred             c
Q 043826           87 G   87 (104)
Q Consensus        87 ~   87 (104)
                      .
T Consensus       182 ~  182 (251)
T PRK10258        182 H  182 (251)
T ss_pred             e
Confidence            4

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.01  E-value=0.0066  Score=41.45  Aligned_cols=82  Identities=15%  Similarity=0.174  Sum_probs=53.7

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhh-hhhcCCCc-----eecCHHHHH
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVL-MMIQRPDG-----KERTRHEFM   77 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~-m~~~~~~g-----~~rt~~e~~   77 (104)
                      +.-.||+|.+|+  ..++++|.+-++|||.+++......    .  .+.....+... .+.+.+.|     +...++|..
T Consensus       129 ~cmEVlEHv~dp--~~~~~~c~~lvkP~G~lf~STinrt----~--ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~  200 (243)
T COG2227         129 TCMEVLEHVPDP--ESFLRACAKLVKPGGILFLSTINRT----L--KAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELI  200 (243)
T ss_pred             EEhhHHHccCCH--HHHHHHHHHHcCCCcEEEEeccccC----H--HHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHH
Confidence            445689999998  4599999999999999988775421    1  11111111110 11112333     456778999


Q ss_pred             HHHHhCCCCceEEEEe
Q 043826           78 TLATGAGFSGMSCERA   93 (104)
Q Consensus        78 ~ll~~aGf~~~~~~~~   93 (104)
                      .|+.++|++......+
T Consensus       201 ~~~~~~~~~~~~~~g~  216 (243)
T COG2227         201 RWLLGANLKIIDRKGL  216 (243)
T ss_pred             HhcccCCceEEeecce
Confidence            9999999998876654

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=95.99  E-value=0.029  Score=38.90  Aligned_cols=39  Identities=13%  Similarity=0.185  Sum_probs=32.5

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE-Eeee
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIV-VELM   40 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i-~d~~   40 (104)
                      +.++.+.|-+++.++|...|..++.+|.||-.+++ +|..
T Consensus       157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~  196 (321)
T COG4301         157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLR  196 (321)
T ss_pred             EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecccc
Confidence            45678889999999999999999999999976665 3433

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=95.86  E-value=0.026  Score=37.95  Aligned_cols=47  Identities=11%  Similarity=0.226  Sum_probs=35.9

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC
Q 043826           18 LKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI   94 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~   94 (104)
                      ..+++++.+.|+|||++++.-        .                      ....+++.++++++||+.+++....
T Consensus       197 ~~~i~~~~~~L~~gG~~~~~~--------~----------------------~~~~~~~~~~l~~~gf~~v~~~~d~  243 (251)
T TIGR03534       197 RRIIAQAPRLLKPGGWLLLEI--------G----------------------YDQGEAVRALFEAAGFADVETRKDL  243 (251)
T ss_pred             HHHHHHHHHhcccCCEEEEEE--------C----------------------ccHHHHHHHHHHhCCCCceEEEeCC
Confidence            478999999999999987621        0                      0124578899999999988877653

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=95.63  E-value=0.032  Score=37.53  Aligned_cols=60  Identities=17%  Similarity=0.335  Sum_probs=45.6

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeCCCe
Q 043826           18 LKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAIGNL   97 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~   97 (104)
                      ...|+++.+.|+|||.|.|.|-..          +    +.             +.+++.+.++.-||+..........+
T Consensus       138 ~~fi~EA~RvLK~~G~L~IAEV~S----------R----f~-------------~~~~F~~~~~~~GF~~~~~d~~n~~F  190 (219)
T PF05148_consen  138 PDFIREANRVLKPGGILKIAEVKS----------R----FE-------------NVKQFIKALKKLGFKLKSKDESNKHF  190 (219)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEGG----------G-----S--------------HHHHHHHHHCTTEEEEEEE--STTE
T ss_pred             HHHHHHHHheeccCcEEEEEEecc----------c----Cc-------------CHHHHHHHHHHCCCeEEecccCCCeE
Confidence            578999999999999999999421          1    11             35678888999999999866666788


Q ss_pred             EEEEEEC
Q 043826           98 WVMEFYK  104 (104)
Q Consensus        98 ~vie~~~  104 (104)
                      .+++.+|
T Consensus       191 ~~f~F~K  197 (219)
T PF05148_consen  191 VLFEFKK  197 (219)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888765

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=95.57  E-value=0.1  Score=35.19  Aligned_cols=70  Identities=16%  Similarity=0.205  Sum_probs=54.5

Q ss_pred             EEeccccccCChHH-HHHHHHHHHhhCCCCCE-----EEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHH
Q 043826            3 NCTLTILHDWNDEH-CLKLLKNCYKSIPEDGK-----VIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEF   76 (104)
Q Consensus         3 y~~~~vlH~~~d~~-~~~iL~~~~~aL~pgg~-----l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~   76 (104)
                      -.++-||-..|++. .-++|+++++-|+|+|.     |+|+   .|..                 .  ..|++.-+.+.|
T Consensus       108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV---lP~~-----------------C--v~NSRy~~~~~l  165 (219)
T PF11968_consen  108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV---LPLP-----------------C--VTNSRYMTEERL  165 (219)
T ss_pred             EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE---eCch-----------------H--hhcccccCHHHH
Confidence            45677888899775 78999999999999998     5554   1211                 1  137888899999


Q ss_pred             HHHHHhCCCCceEEEEeC
Q 043826           77 MTLATGAGFSGMSCERAI   94 (104)
Q Consensus        77 ~~ll~~aGf~~~~~~~~~   94 (104)
                      .++++.-||..++.....
T Consensus       166 ~~im~~LGf~~~~~~~~~  183 (219)
T PF11968_consen  166 REIMESLGFTRVKYKKSK  183 (219)
T ss_pred             HHHHHhCCcEEEEEEecC
Confidence            999999999999876553

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=95.57  E-value=0.018  Score=39.95  Aligned_cols=82  Identities=12%  Similarity=0.187  Sum_probs=54.4

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCc-----eecCHHHHHH
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDG-----KERTRHEFMT   78 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g-----~~rt~~e~~~   78 (104)
                      +.+-|+||..|.  +.+++.+.+.|+|||+++|....-.-.   ..+.  ...++-..+...+.|     +.-+++|..+
T Consensus       163 vcsevleHV~dp--~~~l~~l~~~lkP~G~lfittinrt~l---S~~~--~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~  235 (282)
T KOG1270|consen  163 VCSEVLEHVKDP--QEFLNCLSALLKPNGRLFITTINRTIL---SFAG--TIFLAEIVLRIVPKGTHTWEKFINPEELTS  235 (282)
T ss_pred             eeHHHHHHHhCH--HHHHHHHHHHhCCCCceEeeehhhhHH---Hhhc--cccHHHHHHHhcCCCCcCHHHcCCHHHHHH
Confidence            456688999776  899999999999999999987532211   0000  112222222212233     4568899999


Q ss_pred             HHHhCCCCceEEEE
Q 043826           79 LATGAGFSGMSCER   92 (104)
Q Consensus        79 ll~~aGf~~~~~~~   92 (104)
                      +++.+|++...+..
T Consensus       236 ~l~~~~~~v~~v~G  249 (282)
T KOG1270|consen  236 ILNANGAQVNDVVG  249 (282)
T ss_pred             HHHhcCcchhhhhc
Confidence            99999998877654

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=95.26  E-value=0.089  Score=34.33  Aligned_cols=26  Identities=12%  Similarity=-0.070  Sum_probs=22.4

Q ss_pred             ceecCHHHHHHHHHhCCCCceEEEEe
Q 043826           68 GKERTRHEFMTLATGAGFSGMSCERA   93 (104)
Q Consensus        68 g~~rt~~e~~~ll~~aGf~~~~~~~~   93 (104)
                      .+..+.+++.++++++||++++....
T Consensus       143 ~~~~s~~~~~~ll~~~Gf~v~~~~~~  168 (194)
T TIGR02081       143 IHFCTIADFEDLCGELNLRILDRAAF  168 (194)
T ss_pred             cccCcHHHHHHHHHHCCCEEEEEEEe
Confidence            45679999999999999999887665

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=95.18  E-value=0.052  Score=35.93  Aligned_cols=67  Identities=10%  Similarity=-0.002  Sum_probs=44.1

Q ss_pred             cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCC
Q 043826            7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFS   86 (104)
Q Consensus         7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~   86 (104)
                      .|+|..+.+...++++++.++++|||.+++...+..++  .|.      ...        ....+..+|+.+.+  +|++
T Consensus       102 ~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d--~p~------~~~--------~~f~~~~~EL~~~y--~dW~  163 (192)
T PF03848_consen  102 VVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPD--YPC------PSP--------FPFLLKPGELREYY--ADWE  163 (192)
T ss_dssp             SSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS--S--------SS----------S--B-TTHHHHHT--TTSE
T ss_pred             EEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC--CCC------CCC--------CCcccCHHHHHHHh--CCCe
Confidence            58899999999999999999999999988866553221  110      011        11124567899999  6888


Q ss_pred             ceEEE
Q 043826           87 GMSCE   91 (104)
Q Consensus        87 ~~~~~   91 (104)
                      +++..
T Consensus       164 il~y~  168 (192)
T PF03848_consen  164 ILKYN  168 (192)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87653

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=95.03  E-value=0.049  Score=36.64  Aligned_cols=67  Identities=19%  Similarity=0.195  Sum_probs=44.9

Q ss_pred             ccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-CCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826            6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVP-NTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG   84 (104)
Q Consensus         6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~-~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG   84 (104)
                      +..|+-.+.+...+-.+++.+.|+|||+++++-...+... .+|+       +.            -+.+|+++++. .+
T Consensus       123 r~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPP-------f~------------v~~~ev~~l~~-~~  182 (218)
T PF05724_consen  123 RTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPP-------FS------------VTEEEVRELFG-PG  182 (218)
T ss_dssp             CSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-----------------------HHHHHHHHT-TT
T ss_pred             ecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcC-------CC------------CCHHHHHHHhc-CC
Confidence            3478888999999999999999999999544443333221 1222       21            25789999998 88


Q ss_pred             CCceEEEE
Q 043826           85 FSGMSCER   92 (104)
Q Consensus        85 f~~~~~~~   92 (104)
                      |++.....
T Consensus       183 f~i~~l~~  190 (218)
T PF05724_consen  183 FEIEELEE  190 (218)
T ss_dssp             EEEEEEEE
T ss_pred             cEEEEEec
Confidence            88776654

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=94.94  E-value=0.15  Score=35.73  Aligned_cols=71  Identities=17%  Similarity=0.217  Sum_probs=48.3

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +|+++-+--||     ...++++++.|+|||.+.|.|.-.             ++.|              ...+..-+.
T Consensus       233 V~CLSLMgtn~-----~df~kEa~RiLk~gG~l~IAEv~S-------------Rf~d--------------v~~f~r~l~  280 (325)
T KOG3045|consen  233 VFCLSLMGTNL-----ADFIKEANRILKPGGLLYIAEVKS-------------RFSD--------------VKGFVRALT  280 (325)
T ss_pred             EeeHhhhcccH-----HHHHHHHHHHhccCceEEEEehhh-------------hccc--------------HHHHHHHHH
Confidence            45555555555     568999999999999999998421             1122              223666777


Q ss_pred             hCCCCceEEEEeCCCeEEEEEEC
Q 043826           82 GAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        82 ~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      .-||......-....+.++|+.|
T Consensus       281 ~lGF~~~~~d~~n~~F~lfefkK  303 (325)
T KOG3045|consen  281 KLGFDVKHKDVSNKYFTLFEFKK  303 (325)
T ss_pred             HcCCeeeehhhhcceEEEEEEec
Confidence            78888877665556777777654

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=94.90  E-value=0.047  Score=37.70  Aligned_cols=80  Identities=16%  Similarity=0.213  Sum_probs=50.3

Q ss_pred             CEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHH
Q 043826            1 CINCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLA   80 (104)
Q Consensus         1 ~~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll   80 (104)
                      |+=+-+||==+|.|+-..++++++++-|.|||.|++ |   |.... . +.+.....  .-....+.--...++.+..|+
T Consensus       172 cLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv-E---PQpWk-s-Y~kaar~~--e~~~~ny~~i~lkp~~f~~~l  243 (288)
T KOG2899|consen  172 CLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV-E---PQPWK-S-YKKAARRS--EKLAANYFKIFLKPEDFEDWL  243 (288)
T ss_pred             EEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE-c---CCchH-H-HHHHHHHH--HHhhcCccceecCHHHHHhhh
Confidence            344567777799999999999999999999999854 3   22211 1 11111111  111112234456788999999


Q ss_pred             HhC--CCCce
Q 043826           81 TGA--GFSGM   88 (104)
Q Consensus        81 ~~a--Gf~~~   88 (104)
                      .++  ||+-+
T Consensus       244 ~q~~vgle~~  253 (288)
T KOG2899|consen  244 NQIVVGLESV  253 (288)
T ss_pred             hhhhhheeee
Confidence            988  55543

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=94.88  E-value=0.056  Score=37.59  Aligned_cols=37  Identities=14%  Similarity=0.191  Sum_probs=33.6

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      -+.+|||=.++.+.-.+++++.+++|+|||.|++-..
T Consensus       206 IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s  242 (268)
T COG1352         206 IFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS  242 (268)
T ss_pred             EEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence            4678999999999999999999999999999988765

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=94.77  E-value=0.16  Score=32.86  Aligned_cols=47  Identities=13%  Similarity=0.331  Sum_probs=33.5

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEE
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCER   92 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~   92 (104)
                      ...+++++++.|+|||++++.....                             -+.+++.++++++||+.+++..
T Consensus       110 ~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~~~~~~~~l~~~g~~~~~~~~  156 (187)
T PRK08287        110 LTAIIDWSLAHLHPGGRLVLTFILL-----------------------------ENLHSALAHLEKCGVSELDCVQ  156 (187)
T ss_pred             HHHHHHHHHHhcCCCeEEEEEEecH-----------------------------hhHHHHHHHHHHCCCCcceEEE
Confidence            3568899999999999997744211                             0235677888999998776544

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=94.64  E-value=0.0043  Score=37.46  Aligned_cols=79  Identities=15%  Similarity=0.188  Sum_probs=40.7

Q ss_pred             ccccccCChHHHHHHHHHHHhhCCCCCEEEEEee-ecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh--
Q 043826            6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL-MLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG--   82 (104)
Q Consensus         6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~-~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~--   82 (104)
                      +||==+|.|+-...+++++++.|+|||.+++ |+ -...-...   .+......-+    . ..-...++++..+|.+  
T Consensus        12 kWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~---~~~~~~~~~n----~-~~i~lrP~~F~~~L~~~e   82 (110)
T PF06859_consen   12 KWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKA---KRLSEEIREN----Y-KSIKLRPDQFEDYLLEPE   82 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTT---TTS-HHHHHH----H-HH----GGGHHHHHTSTT
T ss_pred             EEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHH---hhhhHHHHhH----H-hceEEChHHHHHHHHhcc
Confidence            3444478899999999999999999999854 42 11000000   0000011111    1 2222345578898887  


Q ss_pred             CCCCceEEEEe
Q 043826           83 AGFSGMSCERA   93 (104)
Q Consensus        83 aGf~~~~~~~~   93 (104)
                      .||+..+....
T Consensus        83 vGF~~~e~~~~   93 (110)
T PF06859_consen   83 VGFSSVEELGV   93 (110)
T ss_dssp             T---EEEEE--
T ss_pred             cceEEEEEccc
Confidence            59998876554

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.24  E-value=0.049  Score=31.43  Aligned_cols=20  Identities=25%  Similarity=0.458  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHhhCCCCCEE
Q 043826           15 EHCLKLLKNCYKSIPEDGKV   34 (104)
Q Consensus        15 ~~~~~iL~~~~~aL~pgg~l   34 (104)
                      ++...+|+++++.|+|||++
T Consensus        80 ~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhHHHHHHHHHHHcCCCCCC
Confidence            44579999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=94.18  E-value=0.38  Score=32.79  Aligned_cols=57  Identities=14%  Similarity=0.260  Sum_probs=38.5

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEe-CC
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERA-IG   95 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~   95 (104)
                      -.++++++.+.|+|||++++ +.    .            .             ...+++.+++.+.||+.+++..- .+
T Consensus       217 ~~~~~~~~~~~Lk~gG~l~~-e~----g------------~-------------~~~~~~~~~l~~~gf~~v~~~~d~~~  266 (275)
T PRK09328        217 YRRIIEQAPRYLKPGGWLLL-EI----G------------Y-------------DQGEAVRALLAAAGFADVETRKDLAG  266 (275)
T ss_pred             HHHHHHHHHHhcccCCEEEE-EE----C------------c-------------hHHHHHHHHHHhCCCceeEEecCCCC
Confidence            46789999999999999987 21    0            0             11346888999999997776543 34


Q ss_pred             CeEEEEEE
Q 043826           96 NLWVMEFY  103 (104)
Q Consensus        96 ~~~vie~~  103 (104)
                      .-.++-++
T Consensus       267 ~~r~~~~~  274 (275)
T PRK09328        267 RDRVVLGR  274 (275)
T ss_pred             CceEEEEE
Confidence            44444443

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=94.13  E-value=0.082  Score=31.33  Aligned_cols=27  Identities=7%  Similarity=0.277  Sum_probs=21.4

Q ss_pred             cCChHHHHHHHHHHHhhCCCCCEEEEE
Q 043826           11 DWNDEHCLKLLKNCYKSIPEDGKVIVV   37 (104)
Q Consensus        11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~   37 (104)
                      +.+.....++++++++.|+|||++++.
T Consensus        95 ~~~~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        95 GGSGGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             CCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence            334445579999999999999998764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.07  E-value=0.045  Score=37.81  Aligned_cols=64  Identities=13%  Similarity=0.062  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEE
Q 043826           15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCER   92 (104)
Q Consensus        15 ~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~   92 (104)
                      ++=...++|+.+.|+|||.|++....-. .    .+.-  ....+       ..-.-+++.+++-++++||.+.+...
T Consensus       176 ~~y~~al~ni~~lLkpGG~Lil~~~l~~-t----~Y~v--G~~~F-------~~l~l~ee~v~~al~~aG~~i~~~~~  239 (256)
T PF01234_consen  176 DEYRRALRNISSLLKPGGHLILAGVLGS-T----YYMV--GGHKF-------PCLPLNEEFVREALEEAGFDIEDLEK  239 (256)
T ss_dssp             HHHHHHHHHHHTTEEEEEEEEEEEESS--S----EEEE--TTEEE-------E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEEEcCc-e----eEEE--CCEec-------ccccCCHHHHHHHHHHcCCEEEeccc
Confidence            4568899999999999999999886432 2    0100  00001       11224788999999999999988775

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=93.73  E-value=0.22  Score=33.84  Aligned_cols=37  Identities=3%  Similarity=0.001  Sum_probs=32.4

Q ss_pred             ccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826            6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP   42 (104)
Q Consensus         6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~   42 (104)
                      +.+++.++++...+..+++.+.|+|||+++++-.-.+
T Consensus       131 ra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~  167 (226)
T PRK13256        131 RGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD  167 (226)
T ss_pred             ehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence            4678899999999999999999999999998876443

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=93.55  E-value=0.25  Score=27.39  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=24.9

Q ss_pred             eccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 043826            5 TLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVV   37 (104)
Q Consensus         5 ~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~   37 (104)
                      ....+|.+ ++....+++++.+.|+|||.+++.
T Consensus        72 ~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          72 SDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             Eccceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            34455554 456799999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=93.50  E-value=0.57  Score=32.34  Aligned_cols=83  Identities=11%  Similarity=0.023  Sum_probs=52.2

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCc-ccchhh--h--hhhhhhhcCCCceecCHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSI-ESKSNF--H--FDVLMMIQRPDGKERTRHEF   76 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~-~~~~~~--~--~~l~m~~~~~~g~~rt~~e~   76 (104)
                      +++.--++..++.++..++|+.+.+...||+.+ +.|.+.+-...... ..+...  .  .+...+.   .+  .+.++.
T Consensus       161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~  234 (260)
T TIGR00027       161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGSRL-AFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLV---FG--IDRADV  234 (260)
T ss_pred             eeeecchhhcCCHHHHHHHHHHHHHhCCCCcEE-EEEeccccchhHHHHHHHHHHHhhhcccccccc---cC--CChhhH
Confidence            456667889999999999999999988888877 46766542111100 000000  0  1111110   12  367899


Q ss_pred             HHHHHhCCCCceEE
Q 043826           77 MTLATGAGFSGMSC   90 (104)
Q Consensus        77 ~~ll~~aGf~~~~~   90 (104)
                      .+||++.||+....
T Consensus       235 ~~~l~~~Gw~~~~~  248 (260)
T TIGR00027       235 AEWLAERGWRASEH  248 (260)
T ss_pred             HHHHHHCCCeeecC
Confidence            99999999998764

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=93.34  E-value=0.28  Score=32.57  Aligned_cols=38  Identities=16%  Similarity=0.271  Sum_probs=31.1

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPE   43 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~   43 (104)
                      +...+||++++++..++++++++.+  ++.++|.|...+.
T Consensus       110 ~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~  147 (204)
T TIGR03587       110 LTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS  147 (204)
T ss_pred             EECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence            4677899999888899999999986  6788888876543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.13  E-value=0.1  Score=33.79  Aligned_cols=32  Identities=19%  Similarity=0.332  Sum_probs=28.2

Q ss_pred             ccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 043826            6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVV   37 (104)
Q Consensus         6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~   37 (104)
                      .+|+-|+.-++-...++.|++-|+|||.|-|.
T Consensus        54 eHvlEHlt~~Eg~~alkechr~Lrp~G~LriA   85 (185)
T COG4627          54 EHVLEHLTYDEGTSALKECHRFLRPGGKLRIA   85 (185)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence            46777888888999999999999999999775

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=92.19  E-value=0.44  Score=31.72  Aligned_cols=23  Identities=17%  Similarity=0.274  Sum_probs=20.1

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeee
Q 043826           18 LKLLKNCYKSIPEDGKVIVVELM   40 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~~   40 (104)
                      ..+|+.+++.|+|||.+++..+.
T Consensus       145 ~~~L~~~~~~LkpGG~~vi~~~~  167 (209)
T PRK11188        145 ELALDMCRDVLAPGGSFVVKVFQ  167 (209)
T ss_pred             HHHHHHHHHHcCCCCEEEEEEec
Confidence            57999999999999999997643

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=91.79  E-value=0.31  Score=35.57  Aligned_cols=30  Identities=13%  Similarity=0.376  Sum_probs=25.5

Q ss_pred             cccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 043826            9 LHDWNDEHCLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus         9 lH~~~d~~~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      .|.++++.+.++++.+++.|+|||+++++-
T Consensus       311 ~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        311 QHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             CccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            344667778999999999999999999884

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=91.65  E-value=0.19  Score=32.94  Aligned_cols=21  Identities=14%  Similarity=0.210  Sum_probs=18.5

Q ss_pred             HHHHHHHHhhCCCCCEEEEEe
Q 043826           18 LKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      ..+++++++.|+|||.+++.-
T Consensus       112 ~~~l~~~~r~LkpgG~l~~~t  132 (194)
T TIGR00091       112 PHFLKEYANVLKKGGVIHFKT  132 (194)
T ss_pred             HHHHHHHHHHhCCCCEEEEEe
Confidence            479999999999999997754

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=90.71  E-value=0.28  Score=31.93  Aligned_cols=21  Identities=14%  Similarity=0.124  Sum_probs=17.4

Q ss_pred             HHHHHHHHhhCCCCCEEEEEe
Q 043826           18 LKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      ..+++.+++.|+|||++++.+
T Consensus       122 ~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       122 NVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             HHHHHHHHHhcCCCCEEEEEc
Confidence            457888899999999998763

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=90.60  E-value=1.4  Score=31.15  Aligned_cols=87  Identities=11%  Similarity=-0.060  Sum_probs=52.5

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCC---CcccchhhhhhhhhhhcCCCceecCHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNT---SIESKSNFHFDVLMMIQRPDGKERTRHEFMT   78 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~---~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~   78 (104)
                      +.+.-.++-.++.++..++|++|....+||++++..-...+.....   ..........++...-..  -......|+..
T Consensus       173 ~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--~~~~~~~e~~~  250 (297)
T COG3315         173 LWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELV--YFGDDPAEIET  250 (297)
T ss_pred             EEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccce--eccCCHHHHHH
Confidence            4566678889999999999999999999998886654311111111   000000011111111000  11235789999


Q ss_pred             HHHhCCCCceEE
Q 043826           79 LATGAGFSGMSC   90 (104)
Q Consensus        79 ll~~aGf~~~~~   90 (104)
                      |+.+.||.....
T Consensus       251 ~l~~~g~~~~~~  262 (297)
T COG3315         251 WLAERGWRSTLN  262 (297)
T ss_pred             HHHhcCEEEEec
Confidence            999999988765

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=90.20  E-value=0.18  Score=36.10  Aligned_cols=34  Identities=24%  Similarity=0.219  Sum_probs=25.3

Q ss_pred             eccccccC--ChHHHHHHHHHHHhhCCCCCEEEEEe
Q 043826            5 TLTILHDW--NDEHCLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus         5 ~~~vlH~~--~d~~~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      ....||.-  +.+.++.+|+++...|+|||.++..=
T Consensus       151 cQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~  186 (331)
T PF03291_consen  151 CQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT  186 (331)
T ss_dssp             EES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            34456653  35568999999999999999987653

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins

Probab=90.16  E-value=0.74  Score=28.32  Aligned_cols=33  Identities=18%  Similarity=0.138  Sum_probs=27.2

Q ss_pred             CceecCHHHHHHHHHhCCCCceEEEEeCC-CeEE
Q 043826           67 DGKERTRHEFMTLATGAGFSGMSCERAIG-NLWV   99 (104)
Q Consensus        67 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~v   99 (104)
                      .+.-+|.+++.+++++|||++.+.+.-+. .+++
T Consensus        92 ~S~Ky~~~~~~~l~~~aGl~~~~~w~d~~~~f~l  125 (127)
T PF10017_consen   92 NSYKYSPEEFEALAEQAGLEVEKRWTDPKGDFSL  125 (127)
T ss_pred             EeeCcCHHHHHHHHHHCCCeeEEEEECCCCCeEE
Confidence            46678999999999999999999887753 4544

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=90.08  E-value=0.66  Score=33.89  Aligned_cols=41  Identities=7%  Similarity=-0.008  Sum_probs=33.4

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP   42 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~   42 (104)
                      .|+++.+.--+++++..++++.+.++++||||++.--...+
T Consensus       298 ~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~  338 (380)
T PF11899_consen  298 RFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP  338 (380)
T ss_pred             EEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence            36777777555677799999999999999999988876554

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=89.43  E-value=0.37  Score=31.76  Aligned_cols=22  Identities=9%  Similarity=0.151  Sum_probs=19.5

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEe
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      ...+|+++++.|+|||.+++..
T Consensus       135 ~~~~l~~i~~~LkpgG~l~i~~  156 (202)
T PRK00121        135 QPEFLALYARKLKPGGEIHFAT  156 (202)
T ss_pred             CHHHHHHHHHHcCCCCEEEEEc
Confidence            4689999999999999998864

>PRK14967 putative methyltransferase; Provisional

Probab=89.03  E-value=3.6  Score=27.39  Aligned_cols=24  Identities=13%  Similarity=0.163  Sum_probs=19.9

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeee
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVELM   40 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d~~   40 (104)
                      ...+++++.+.|+|||+++++..-
T Consensus       138 ~~~~l~~a~~~Lk~gG~l~~~~~~  161 (223)
T PRK14967        138 LDRLCDAAPALLAPGGSLLLVQSE  161 (223)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEec
Confidence            456889999999999999987543

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=87.77  E-value=1.4  Score=31.60  Aligned_cols=32  Identities=16%  Similarity=0.299  Sum_probs=25.3

Q ss_pred             ccccC---ChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826            8 ILHDW---NDEHCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus         8 vlH~~---~d~~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      -+|+.   +.+...++++++.+.|+|||+++|+-.
T Consensus       270 PFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        270 PFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             CccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence            45653   345578999999999999999988654

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=87.66  E-value=0.59  Score=32.92  Aligned_cols=35  Identities=11%  Similarity=0.311  Sum_probs=29.2

Q ss_pred             eccccccCChHH-HHHHHHHHHhhCCCCCEEEEEee
Q 043826            5 TLTILHDWNDEH-CLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus         5 ~~~vlH~~~d~~-~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      -..++|+|+... ..++++++.+.++|||..+|.=.
T Consensus       109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw  144 (293)
T KOG1331|consen  109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW  144 (293)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            356899999665 78999999999999999777643

>TIGR00438 rrmJ cell division protein FtsJ

Probab=87.65  E-value=0.84  Score=29.54  Aligned_cols=21  Identities=14%  Similarity=0.140  Sum_probs=18.8

Q ss_pred             HHHHHHHHHhhCCCCCEEEEE
Q 043826           17 CLKLLKNCYKSIPEDGKVIVV   37 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~   37 (104)
                      ..++|+++++.|+|||++++.
T Consensus       125 ~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438       125 VELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             HHHHHHHHHHHccCCCEEEEE
Confidence            368999999999999999885

>PRK07402 precorrin-6B methylase; Provisional

Probab=86.46  E-value=0.93  Score=29.53  Aligned_cols=24  Identities=8%  Similarity=0.315  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEee
Q 043826           16 HCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus        16 ~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      ....+++++.+.|+|||++++...
T Consensus       120 ~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        120 PIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             CHHHHHHHHHHhcCCCeEEEEEee
Confidence            357899999999999999988864

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=86.33  E-value=6.1  Score=27.64  Aligned_cols=62  Identities=16%  Similarity=0.105  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEE
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCER   92 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~   92 (104)
                      ..+-|..|+..|+|||.-+=+-++.=...            +..  .....+-+-|.+|+.++++..||++++...
T Consensus       181 i~~Yi~tI~~lLkpgG~WIN~GPLlyh~~------------~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  181 IIEYIETIEHLLKPGGYWINFGPLLYHFE------------PMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             HHHHHHHHHHHhccCCEEEecCCccccCC------------CCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence            67889999999999995544443321111            000  000124567899999999999999987655

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=86.14  E-value=1  Score=29.44  Aligned_cols=23  Identities=13%  Similarity=0.502  Sum_probs=19.3

Q ss_pred             hHHHHHHHHHHHhhCCCCCEEEE
Q 043826           14 DEHCLKLLKNCYKSIPEDGKVIV   36 (104)
Q Consensus        14 d~~~~~iL~~~~~aL~pgg~l~i   36 (104)
                      .++...+++.+.+.|+|||++++
T Consensus       121 ~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        121 SEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             cccHHHHHHHHHHHcCCCcEEEE
Confidence            34567899999999999999975

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=85.87  E-value=0.88  Score=33.34  Aligned_cols=41  Identities=17%  Similarity=0.227  Sum_probs=32.1

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP   42 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~   42 (104)
                      +|++--.||+=+.-.....+++..+.+.|||.++|+|.-.|
T Consensus       189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence            45555566776666666799999999999999999997554

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=85.80  E-value=1.1  Score=32.49  Aligned_cols=31  Identities=23%  Similarity=0.304  Sum_probs=23.8

Q ss_pred             ecccccc-CC-hHHHHHHHHHHHhhCCCCCEEE
Q 043826            5 TLTILHD-WN-DEHCLKLLKNCYKSIPEDGKVI   35 (104)
Q Consensus         5 ~~~vlH~-~~-d~~~~~iL~~~~~aL~pgg~l~   35 (104)
                      .+.++|. |. .++++.+|+|+.+.|+|||.++
T Consensus       202 cQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI  234 (389)
T KOG1975|consen  202 CQFAFHYAFETEESARIALRNVAKCLKPGGVFI  234 (389)
T ss_pred             eeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence            3455664 33 4569999999999999999875

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=85.25  E-value=1.2  Score=29.19  Aligned_cols=22  Identities=14%  Similarity=0.407  Sum_probs=19.6

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEe
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      ...+++.+++.|+|||++++.+
T Consensus       124 ~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        124 LSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             HHHHHHHHHHhcCCCeEEEEEe
Confidence            4679999999999999999885

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=84.54  E-value=1.5  Score=31.18  Aligned_cols=29  Identities=10%  Similarity=0.117  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 043826           16 HCLKLLKNCYKSIPEDGKVIVVELMLPEV   44 (104)
Q Consensus        16 ~~~~iL~~~~~aL~pgg~l~i~d~~~~~~   44 (104)
                      +-...|+.+.+.|+|||+++|+-+-.-++
T Consensus       218 ~L~~~L~~~~~~L~~gGrl~VISfHSLED  246 (305)
T TIGR00006       218 ELEEALQFAPNLLAPGGRLSIISFHSLED  246 (305)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence            46788999999999999999998865444

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=84.52  E-value=1.8  Score=30.81  Aligned_cols=29  Identities=14%  Similarity=0.182  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 043826           16 HCLKLLKNCYKSIPEDGKVIVVELMLPEV   44 (104)
Q Consensus        16 ~~~~iL~~~~~aL~pgg~l~i~d~~~~~~   44 (104)
                      +..+.|..+.+.|+||||++|+-+-.-++
T Consensus       222 ~L~~~L~~a~~~L~~gGRl~VIsFHSLED  250 (314)
T COG0275         222 ELEEALEAALDLLKPGGRLAVISFHSLED  250 (314)
T ss_pred             HHHHHHHHHHHhhCCCcEEEEEEecchHH
Confidence            46789999999999999999998865444

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=84.24  E-value=1.1  Score=30.60  Aligned_cols=91  Identities=11%  Similarity=0.075  Sum_probs=52.5

Q ss_pred             cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhh-----hhhhhhhhc-CCCceecCHHHHHHHH
Q 043826            7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNF-----HFDVLMMIQ-RPDGKERTRHEFMTLA   80 (104)
Q Consensus         7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~-----~~~l~m~~~-~~~g~~rt~~e~~~ll   80 (104)
                      .+||=.+|.  .++|.+....|.|||.|.+.=   |++.+.+.......     .+.-.+-.. ...+..-+.+.|-++|
T Consensus       100 AvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQm---PdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL  174 (257)
T COG4106         100 AVLQWLPDH--PELLPRLVSQLAPGGVLAVQM---PDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL  174 (257)
T ss_pred             hhhhhcccc--HHHHHHHHHhhCCCceEEEEC---CCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence            377777777  799999999999999997753   44433321100000     111111100 0123345789999999


Q ss_pred             HhCCCCceEEEEe------CCCeEEEEEE
Q 043826           81 TGAGFSGMSCERA------IGNLWVMEFY  103 (104)
Q Consensus        81 ~~aGf~~~~~~~~------~~~~~vie~~  103 (104)
                      ...+ ..+.+++.      .+..+|+|=+
T Consensus       175 a~~~-~rvDiW~T~Y~h~l~~a~aIvdWv  202 (257)
T COG4106         175 APLA-CRVDIWHTTYYHQLPGADAIVDWV  202 (257)
T ss_pred             Cccc-ceeeeeeeeccccCCCccchhhhe
Confidence            8777 55566553      3455666543

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=82.72  E-value=13  Score=25.74  Aligned_cols=58  Identities=16%  Similarity=0.140  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC--
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI--   94 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~--   94 (104)
                      -.++++.+...|+|||++.++-.   .+                           ...|+..++.+.+|...++..+.  
T Consensus       149 le~~i~~a~~~lk~~G~l~~V~r---~e---------------------------rl~ei~~~l~~~~~~~k~i~~V~p~  198 (248)
T COG4123         149 LEDLIRAAAKLLKPGGRLAFVHR---PE---------------------------RLAEIIELLKSYNLEPKRIQFVYPK  198 (248)
T ss_pred             HHHHHHHHHHHccCCCEEEEEec---HH---------------------------HHHHHHHHHHhcCCCceEEEEecCC
Confidence            46889999999999999977652   11                           13377778888888888777763  


Q ss_pred             ----CCeEEEEEEC
Q 043826           95 ----GNLWVMEFYK  104 (104)
Q Consensus        95 ----~~~~vie~~~  104 (104)
                          ...-++|++|
T Consensus       199 ~~k~A~~vLv~~~k  212 (248)
T COG4123         199 IGKAANRVLVEAIK  212 (248)
T ss_pred             CCCcceEEEEEEec
Confidence                3566777765

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=82.61  E-value=9.4  Score=26.61  Aligned_cols=65  Identities=14%  Similarity=0.172  Sum_probs=41.0

Q ss_pred             cccccCChH------HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHH
Q 043826            7 TILHDWNDE------HCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLA   80 (104)
Q Consensus         7 ~vlH~~~d~------~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll   80 (104)
                      .++||=|.=      -+.++-++.++.|+|||+++  ..+..+.  ..     ..-.|+             +....+.|
T Consensus       208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF--HYvG~Pg--~r-----yrG~d~-------------~~gVa~RL  265 (287)
T COG2521         208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF--HYVGNPG--KR-----YRGLDL-------------PKGVAERL  265 (287)
T ss_pred             eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE--EEeCCCC--cc-----cccCCh-------------hHHHHHHH
Confidence            356665531      25678889999999999985  2232221  10     112332             34778889


Q ss_pred             HhCCCCceEEEEe
Q 043826           81 TGAGFSGMSCERA   93 (104)
Q Consensus        81 ~~aGf~~~~~~~~   93 (104)
                      +++||..++....
T Consensus       266 r~vGF~~v~~~~~  278 (287)
T COG2521         266 RRVGFEVVKKVRE  278 (287)
T ss_pred             HhcCceeeeeehh
Confidence            9999998876654

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=82.32  E-value=2.1  Score=30.29  Aligned_cols=29  Identities=14%  Similarity=0.199  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 043826           16 HCLKLLKNCYKSIPEDGKVIVVELMLPEV   44 (104)
Q Consensus        16 ~~~~iL~~~~~aL~pgg~l~i~d~~~~~~   44 (104)
                      +-...|..+.+.|+|||+++|+-+-.-++
T Consensus       214 ~L~~~L~~~~~~L~~gGrl~visfHSlED  242 (296)
T PRK00050        214 ELERALEAALDLLKPGGRLAVISFHSLED  242 (296)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence            46789999999999999999998865444

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=82.18  E-value=2.6  Score=29.38  Aligned_cols=24  Identities=13%  Similarity=0.166  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEee
Q 043826           16 HCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus        16 ~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      ....+++++.+.|+|||++++...
T Consensus       237 ~l~~ll~~~~~~LkpgG~li~sgi  260 (288)
T TIGR00406       237 VIKELYPQFSRLVKPGGWLILSGI  260 (288)
T ss_pred             HHHHHHHHHHHHcCCCcEEEEEeC
Confidence            346899999999999999988764

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=82.13  E-value=2.1  Score=29.68  Aligned_cols=33  Identities=18%  Similarity=0.331  Sum_probs=26.6

Q ss_pred             ccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826            8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP   42 (104)
Q Consensus         8 vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~   42 (104)
                      ++=|.+|+  -..|.++.++|+|||.+++.-+..+
T Consensus       167 v~LDmp~P--W~~le~~~~~Lkpgg~~~~y~P~ve  199 (256)
T COG2519         167 VFLDLPDP--WNVLEHVSDALKPGGVVVVYSPTVE  199 (256)
T ss_pred             EEEcCCCh--HHHHHHHHHHhCCCcEEEEEcCCHH
Confidence            44477776  7899999999999999988765543

>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2

Probab=81.47  E-value=8.8  Score=22.71  Aligned_cols=77  Identities=16%  Similarity=0.226  Sum_probs=47.4

Q ss_pred             ccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCc------eecCHHHHHHHHH
Q 043826            8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDG------KERTRHEFMTLAT   81 (104)
Q Consensus         8 vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g------~~rt~~e~~~ll~   81 (104)
                      +|=|++.++..++|++... +. .+++++.  +.|.++   ..   ..+.-+  .-.++++      ...+++++.+.++
T Consensus         4 vLIHYp~~d~~~~l~~La~-~t-~~~~ifT--fAP~T~---~L---~~m~~i--G~lFP~~dRsp~i~~~~e~~l~~~l~   71 (97)
T PF07109_consen    4 VLIHYPAEDAAQMLAHLAS-RT-RGSLIFT--FAPRTP---LL---ALMHAI--GKLFPRPDRSPRIYPHREEDLRRALA   71 (97)
T ss_pred             eEeccCHHHHHHHHHHHHH-hc-cCcEEEE--ECCCCH---HH---HHHHHH--hccCCCCCCCCcEEEeCHHHHHHHHH
Confidence            5668899999999999886 33 4455443  334432   10   011111  1123222      2245789999999


Q ss_pred             hCCCCceEEEEeCCC
Q 043826           82 GAGFSGMSCERAIGN   96 (104)
Q Consensus        82 ~aGf~~~~~~~~~~~   96 (104)
                      ++||++.+...+.++
T Consensus        72 ~~g~~~~r~~ris~g   86 (97)
T PF07109_consen   72 AAGWRIGRTERISSG   86 (97)
T ss_pred             hCCCeeeecccccCc
Confidence            999999998888654

1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=81.13  E-value=2  Score=31.59  Aligned_cols=25  Identities=8%  Similarity=0.211  Sum_probs=22.2

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecC
Q 043826           18 LKLLKNCYKSIPEDGKVIVVELMLP   42 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~~~~   42 (104)
                      .++|+++++.|+|||+++....-..
T Consensus       348 ~~lL~~a~~~LkpgG~lvystcs~~  372 (426)
T TIGR00563       348 SEILDAIWPLLKTGGTLVYATCSVL  372 (426)
T ss_pred             HHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            6899999999999999999887553

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=81.01  E-value=2  Score=28.42  Aligned_cols=22  Identities=9%  Similarity=0.373  Sum_probs=18.9

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEe
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      ...+|+.+.+.|+|||++++-=
T Consensus       114 i~~ile~~~~~l~~ggrlV~na  135 (187)
T COG2242         114 IEEILEAAWERLKPGGRLVANA  135 (187)
T ss_pred             HHHHHHHHHHHcCcCCeEEEEe
Confidence            4789999999999999996643

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=80.04  E-value=1.4  Score=28.09  Aligned_cols=24  Identities=8%  Similarity=0.203  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEee
Q 043826           16 HCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus        16 ~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      -..++++.+.+.|+|||+++++-.
T Consensus       118 ~~~~~i~~a~~~Lk~~G~l~lv~~  141 (170)
T PF05175_consen  118 LLRDFIEQARRYLKPGGRLFLVIN  141 (170)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hHHHHHHHHHHhccCCCEEEEEee
Confidence            468999999999999999976543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	104
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		7e-27
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		9e-27
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		7e-25
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		1e-18
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		7e-18
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		8e-11
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		8e-11
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		8e-11
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		2e-08
3lst_A	348	Crystal Structure Of Calo1, Methyltransferase In Ca		7e-08
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		2e-07
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		1e-06
4a6d_A	353	Crystal Structure Of Human N-Acetylserotonin Methyl		3e-05

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  115 bits (287), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 67/97 (69%)
Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           I HDW+DEHCLK LKNCY+++P++GKVIV E +LP  P++S+ +K   H DV+M+   P 
Sbjct: 267 ICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPG 326
Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKERT+ EF  LA GAGF G        N ++MEF K
Sbjct: 327 GKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score =  115 bits (287), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 52/97 (53%), Positives = 62/97 (63%)
Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           I HDW+DEHCLKLLKNCY ++P+ GKVIV E +LP  P+ SI +K   H D LM+   P 
Sbjct: 270 ICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPG 329
Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKERT  EF  LA  +GF G        N +VMEF K
Sbjct: 330 GKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score =  108 bits (270), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 45/97 (46%), Positives = 62/97 (63%)
Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           ILHDW+D+HC  LLKNCY ++P  GKV++V+ +LP  P  +  S+  FH D++M+   P 
Sbjct: 268 ILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPG 327
Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           G+ER   EF  LA GAGF+G+       N W +EF K
Sbjct: 328 GRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 7   TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRP 66
            + H+W+DE C++ L NC+K++  +GKVI+VE +LPE PNTS ESK     D LM I   
Sbjct: 275 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV- 333
Query: 67  DGKERTRHEFMTLATGAGFSGMSCE-RAIGNLWVMEFYK 104
            G+ERT  ++  L+  +GFS      RA  +L VMEFYK
Sbjct: 334 GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 64/99 (64%), Gaps = 4/99 (4%)
Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           + H+W+DE C++ L NC+K++  +GKVI+VE +LPE PNTS ESK     D L  I    
Sbjct: 276 VCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLXFIT-VG 334
Query: 68  GKERTRHEFMTLATGAGFSG--MSCERAIGNLWVMEFYK 104
           G+ERT  ++  L+  +GFS   ++C RA  +L V EFYK
Sbjct: 335 GRERTEKQYEKLSKLSGFSKFQVAC-RAFNSLGVXEFYK 372

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 8   ILHDWNDEHCLKLLKNCYKSIP---EDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQ 64
           +LHDWNDE  LK+LKN  ++I    +DGKVI++++ + E  +    ++    +D++M+  
Sbjct: 256 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM 315
Query: 65  RPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103
              GKERT+ E+  L   AGFS        G   ++E Y
Sbjct: 316 FL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 353

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 8   ILHDWNDEHCLKLLKNCYKSIP---EDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQ 64
           +LHDWNDE  LK+LKN  ++I    +DGKVI++++ + E  +    ++    +D++M+  
Sbjct: 260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM 319
Query: 65  RPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103
              GKERT+ E+  L   AGFS        G   ++E Y
Sbjct: 320 FL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 357

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 8   ILHDWNDEHCLKLLKNCYKSIP---EDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQ 64
           +LHDWNDE  LK+LKN  ++I    +DGKVI++++ + E  +    ++    +D++M+  
Sbjct: 259 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM 318
Query: 65  RPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103
              GKERT+ E+  L   AGFS        G   ++E Y
Sbjct: 319 FL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 356

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 7   TILHDWNDEHCLKLLKNCYKSIPED---GKVIVVELMLPEVPNTSIESKSNFHFDVLMMI 63
            +LHDW D+ C+K+LK C +++  D   GKVIV+++++ E  + +  ++     +V   I
Sbjct: 259 AVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQLTQIKLLMNV--TI 316
Query: 64  QRPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103
              +GKER   E+  L   AGF         G + ++E Y
Sbjct: 317 SCVNGKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIY 356

>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           ILH+W DE  +++L NC +  P  G+V+V++ ++PE  N + +SK     D   +  R  
Sbjct: 256 ILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPE-GNDAHQSKEX---DFXXLAAR-T 310
Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIG 95
           G+ERT  E   L T A   G+  +R +G
Sbjct: 311 GQERTAAELEPLFTAA---GLRLDRVVG 335

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 8   ILHDWNDEHCLKLLKNCYKSIPED---GKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQ 64
           ILH+W D+ CL++LK C +++  D   GKV ++++++ +  + +  ++     DV M   
Sbjct: 255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACL 314
Query: 65  RPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103
             +GKER   E+  L   AGF         G L ++E Y
Sbjct: 315 --NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 8   ILHDWNDEHCLKLLKNCYKSIPED---GKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQ 64
           ILH+W D+ CL++LK C +++  D   GKV +++ ++ +  + +  ++     DV     
Sbjct: 255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKLLXDVNXACL 314
Query: 65  RPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103
             +GKER   E+  L   AGF         G L ++E Y
Sbjct: 315 --NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351

>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           +LHDW D  C  LL+  Y +    G ++V+E +L E     + ++       L M+ + +
Sbjct: 253 VLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQ----LYSLNMLVQTE 308
Query: 68  GKERTRHEFMTLATGAGF 85
           G+ERT   +  L + AGF
Sbjct: 309 GQERTPTHYHMLLSSAGF 326

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	104
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	1e-42
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	3e-42
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	1e-38
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	6e-36
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	4e-35
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	5e-35
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	9e-35
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	1e-34
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	4e-34
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	2e-33
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	3e-32
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	7e-32
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	2e-31
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	1e-29
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	5e-25

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  141 bits (357), Expect = 1e-42
 Identities = 45/97 (46%), Positives = 62/97 (63%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           ILHDW+D+HC  LLKNCY ++P  GKV++V+ +LP  P  +  S+  FH D++M+   P 
Sbjct: 268 ILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPG 327

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           G+ER   EF  LA GAGF+G+       N W +EF K
Sbjct: 328 GRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  140 bits (355), Expect = 3e-42
 Identities = 52/97 (53%), Positives = 62/97 (63%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           I HDW+DEHCLKLLKNCY ++P+ GKVIV E +LP  P+ SI +K   H D LM+   P 
Sbjct: 270 ICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPG 329

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           GKERT  EF  LA  +GF G        N +VMEF K
Sbjct: 330 GKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  131 bits (331), Expect = 1e-38
 Identities = 46/98 (46%), Positives = 63/98 (64%), Gaps = 2/98 (2%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           + H+W+DE C++ L NC+K++  +GKVI+VE +LPE PNTS ESK     D LM I    
Sbjct: 276 VCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFIT-VG 334

Query: 68  GKERTRHEFMTLATGAGFSGMS-CERAIGNLWVMEFYK 104
           G+ERT  ++  L+  +GFS      RA  +L VMEFYK
Sbjct: 335 GRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  124 bits (313), Expect = 6e-36
 Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           +LHDW+D+  +++L+    ++  D +++V++ ++ E P     + S    D+L+++    
Sbjct: 277 VLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERP-----AASTLFVDLLLLVL-VG 330

Query: 68  GKERTRHEFMTLATGAGFSGMSCER-AIGNLWVMEFYK 104
           G ER+  EF  L   +G           G + ++E  +
Sbjct: 331 GAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  121 bits (306), Expect = 4e-35
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           I+ D ++   L+LL NC +++  DG+V+V+E  +         S  +  +DV + +    
Sbjct: 242 IIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASE----PSPMSVLWDVHLFMA-CA 296

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           G+ RT  E + L    GF+            ++   +
Sbjct: 297 GRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  122 bits (307), Expect = 5e-35
 Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 8/102 (7%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           +L +W+DE  L +L+ C +++   G+++V++    E      +   +   D+ M+     
Sbjct: 257 VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGA--DRFFSTLLDLRMLTF-MG 313

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIG-----NLWVMEFYK 104
           G+ RTR E + LA  AG +  S   +       +  ++EF  
Sbjct: 314 GRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  120 bits (303), Expect = 9e-35
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 5/99 (5%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPED---GKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQ 64
           ILH+W D+ CL++LK C +++  D   GKV ++++++ +  + +  ++     DV M   
Sbjct: 255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC- 313

Query: 65  RPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103
             +GKER   E+  L   AGF         G L ++E Y
Sbjct: 314 -LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  120 bits (303), Expect = 1e-34
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           ILH+W DE  +++L NC + +P  G+V+V++ ++PE      ++  +   D +M+     
Sbjct: 256 ILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGN----DAHQSKEMDFMMLAA-RT 310

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103
           G+ERT  E   L T AG            + +    
Sbjct: 311 GQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGV 346

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  119 bits (299), Expect = 4e-34
 Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 4/99 (4%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIP---EDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQ 64
           +LHDWNDE  LK+LKN  ++I    +DGKVI++++ + E  +    ++    +D++M+  
Sbjct: 260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM 319

Query: 65  RPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103
              GKERT+ E+  L   AGFS        G   ++E Y
Sbjct: 320 -FLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 357

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  116 bits (293), Expect = 2e-33
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           +LHDW+D   + +L+ C ++    G V+V+E +         +  +    D+ M+     
Sbjct: 244 VLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAG-------DEHAGTGMDLRMLTY-FG 295

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEF 102
           GKER+  E   LA  AG +  +    I  + ++E 
Sbjct: 296 GKERSLAELGELAAQAGLAVRAAHP-ISYVSIVEM 329

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score =  114 bits (286), Expect = 3e-32
 Identities = 12/96 (12%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           IL+  N++    + K  + ++   G+++++++++ +  N + +  S++     M      
Sbjct: 265 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFS--V 322

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103
              + +  +  +    G+  ++  R   +L V    
Sbjct: 323 LGFKEQARYKEILESLGYKDVTMVRKYDHLLVQAVK 358

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  113 bits (284), Expect = 7e-32
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           +L +W D   +++L  C +++   G++++ E       +    ++     D+ M++    
Sbjct: 258 VLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENS---FNEQFTELDLRMLVF-LG 313

Query: 68  GKERTRHEFMTLATGAGFS 86
           G  RTR ++  LA  AG  
Sbjct: 314 GALRTREKWDGLAASAGLV 332

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score =  111 bits (280), Expect = 2e-31
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
            LH ++   C +LL+    ++  +GKVIV + +      T  ++     F ++M+   P+
Sbjct: 241 FLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAA---AFSLVMLATTPN 297

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLW-VMEFYK 104
           G   T  E+ ++ + AGFS             V+  YK
Sbjct: 298 GDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVAYK 335

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score =  107 bits (269), Expect = 1e-29
 Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
            LH ++     +++ +    +   G ++++ + + +   T   S     F + MM+    
Sbjct: 257 CLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSA---DFSLHMMVNTNH 313

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK 104
           G+         +   AG +    ER+IG   ++   +
Sbjct: 314 GELHPTPWIAGVVRDAGLA--VGERSIGRYTLLIGQR 348

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 95.1 bits (237), Expect = 5e-25
 Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 3/99 (3%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPN-TSIESKSNFHFDVLMMIQRP 66
            L  +++E  + +L    +SI +D KV ++E +       T+    +        M    
Sbjct: 257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMAN-G 315

Query: 67  DGKERTRHEFMTLATGAGFSGMSCERAIGNLW-VMEFYK 104
           + K     + +     AG      +  IG    +++   
Sbjct: 316 NSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	104
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.96
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.91
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.9
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.84
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.84
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.84
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.83
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.82
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.81
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.81
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.78
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.77
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.73
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.73
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.71
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.71
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.2
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.16
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.01
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.95
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.95
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.92
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.89
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.89
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.88
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.86
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.86
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.85
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.82
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.81
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.8
3ocj_A	305	Putative exported protein; structural genomics, PS	98.79
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.78
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.77
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.77
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.75
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.75
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.73
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.72
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.7
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.67
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.66
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.66
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.65
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.62
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.59
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.59
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.57
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.57
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.56
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.56
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.54
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.54
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.5
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.49
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.49
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.47
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.47
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.42
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.37
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.37
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.37
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.36
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.36
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.35
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.33
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.33
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.32
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.32
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.3
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.28
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.28
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.28
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.23
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.2
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.19
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.16
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.15
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.15
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.15
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.12
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	97.98
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	97.98
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.92
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	97.9
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	97.77
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	97.75
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	97.68
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	97.64
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	97.63
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.62
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	97.54
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.52
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	97.15
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.08
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	97.03
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.03
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.0
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	96.96
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	96.96
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.91
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.89
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	96.88
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	96.85
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	96.62
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.59
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	96.53
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	96.51
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	96.49
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	96.41
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	96.27
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.26
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.21
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	96.19
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	95.89
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	95.88
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	95.85
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	95.8
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	95.65
3lpm_A	259	Putative methyltransferase; structural genomics, p	95.63
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	95.34
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	95.29
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	95.28
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.25
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	94.99
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	94.77
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.43
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	94.32
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	94.26
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	94.2
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	94.08
3sso_A	419	Methyltransferase; macrolide, natural product, ros	94.08
2h00_A	254	Methyltransferase 10 domain containing protein; st	93.99
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	93.82
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	93.62
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	93.52
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	93.23
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	92.83
2frn_A	278	Hypothetical protein PH0793; structural genomics,	92.25
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	92.23
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	92.18
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	92.09
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	91.74
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	91.69
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	91.6
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	91.59
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	91.46
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	90.5
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	90.47
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	90.4
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	90.16
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	89.76
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	89.35
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	89.17
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	88.84
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	88.71
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	88.65
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	88.6
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	88.56
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	88.55
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	88.37
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	88.32
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	87.62
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	87.23
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	87.17
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	87.17
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	87.1
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	87.01
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	86.71
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	86.67
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	86.33
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	86.17
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	85.87
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	85.83
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	85.72
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	85.56
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	85.28
2km1_A	136	Protein DRE2; yeast, antiapoptotic, protein bindin	85.28
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	85.25
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	85.21
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	85.07
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	84.97
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	84.41
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	84.32
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	83.36
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	83.14
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	82.78
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	82.55
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	82.45
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	82.2
2qm3_A	373	Predicted methyltransferase; putative methyltransf	82.02
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	81.67
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	81.64
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	81.44
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	81.23
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	80.63

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.96  E-value=2.5e-28  Score=171.55  Aligned_cols=99  Identities=25%  Similarity=0.458  Sum_probs=91.0

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +|++++|||||+|++|.+||++++++|+|||+++|+|.+.++++..+.   ....+|++||..+ +|++||.+||++|++
T Consensus       247 ~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~---~~~~~dl~ml~~~-~g~ert~~e~~~ll~  322 (353)
T 4a6d_A          247 LYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPL---LTQLYSLNMLVQT-EGQERTPTHYHMLLS  322 (353)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCH---HHHHHHHHHHHSS-SCCCCCHHHHHHHHH
T ss_pred             EEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCH---HHHHHHHHHHHhC-CCcCCCHHHHHHHHH
Confidence            699999999999999999999999999999999999999987765543   2357899999876 999999999999999


Q ss_pred             hCCCCceEEEEeCCCeEEEEEEC
Q 043826           82 GAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        82 ~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      +|||+.+++++.++.+++|+++|
T Consensus       323 ~AGf~~v~v~~~~~~~~~i~ArK  345 (353)
T 4a6d_A          323 SAGFRDFQFKKTGAIYDAILARK  345 (353)
T ss_dssp             HHTCEEEEEECCSSSCEEEEEEC
T ss_pred             HCCCceEEEEEcCCceEEEEEEe
Confidence            99999999999999999999998

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.91  E-value=8.5e-24  Score=148.98  Aligned_cols=103  Identities=44%  Similarity=0.858  Sum_probs=90.1

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +|+++++||+|+|+++.++|++++++|+|||+++|.|.+.++.+..+........+|+.|+....+|++||.+||.++++
T Consensus       262 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~  341 (364)
T 3p9c_A          262 TILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALAR  341 (364)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHH
T ss_pred             EEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHH
Confidence            68999999999999999999999999999999999999987765443222233568888885445899999999999999


Q ss_pred             hCCCCceEEEEeCCCeEEEEEEC
Q 043826           82 GAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        82 ~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      +|||+.+++.+..+..++||++|
T Consensus       342 ~AGF~~v~~~~~~~~~~vie~~k  364 (364)
T 3p9c_A          342 GAGFTGVKSTYIYANAWAIEFTK  364 (364)
T ss_dssp             HTTCCEEEEEEEETTEEEEEEEC
T ss_pred             HCCCceEEEEEcCCceEEEEEeC
Confidence            99999999999999999999997

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.90  E-value=5e-23  Score=145.17  Aligned_cols=103  Identities=50%  Similarity=0.851  Sum_probs=90.3

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +|+++++||+|+|+++.++|++++++|+|||+++|.|.+.++.+..+........+|+.|+..+.+|++||.+||.++++
T Consensus       264 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~  343 (368)
T 3reo_A          264 AIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAM  343 (368)
T ss_dssp             EEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHH
T ss_pred             EEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHH
Confidence            68999999999999999999999999999999999999987765443222334568888886545899999999999999


Q ss_pred             hCCCCceEEEEeCCCeEEEEEEC
Q 043826           82 GAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        82 ~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      +|||+.+++.+..+..++||++|
T Consensus       344 ~AGF~~v~~~~~~~~~~vie~~k  366 (368)
T 3reo_A          344 ASGFRGFKVASCAFNTYVMEFLK  366 (368)
T ss_dssp             HTTCCEEEEEEEETTEEEEEEEC
T ss_pred             HCCCeeeEEEEeCCCcEEEEEEe
Confidence            99999999999999999999987

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.84  E-value=1.4e-20  Score=131.61  Aligned_cols=98  Identities=28%  Similarity=0.506  Sum_probs=86.4

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +|+++++||+|+|+++.++|++++++|+|||+++|.|.+.++...+.    ....+|+.|+... +|+.||.+||.++++
T Consensus       250 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~----~~~~~d~~~~~~~-~~~~~t~~e~~~ll~  324 (348)
T 3lst_A          250 VHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAH----QSKEMDFMMLAAR-TGQERTAAELEPLFT  324 (348)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCC----HHHHHHHHHHHTT-SCCCCBHHHHHHHHH
T ss_pred             EEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcc----hhhhcChhhhhcC-CCcCCCHHHHHHHHH
Confidence            68899999999999999999999999999999999999887654332    2356888888764 899999999999999


Q ss_pred             hCCCCceEEEEeCCCeEEEEEEC
Q 043826           82 GAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        82 ~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      +|||+.+++.+..+..++||++|
T Consensus       325 ~aGf~~~~~~~~~~~~~vie~~p  347 (348)
T 3lst_A          325 AAGLRLDRVVGTSSVMSIAVGVP  347 (348)
T ss_dssp             HTTEEEEEEEECSSSCEEEEEEE
T ss_pred             HCCCceEEEEECCCCcEEEEEEe
Confidence            99999999999778899999986

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.84  E-value=8.7e-21  Score=133.61  Aligned_cols=97  Identities=23%  Similarity=0.519  Sum_probs=86.3

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +|+++++||+|+|+++.++|++++++|+|||+++|.|.+.++...+.     ...+|+.|+... +|++||.+||.++++
T Consensus       271 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-----~~~~d~~~~~~~-~g~~~t~~e~~~ll~  344 (369)
T 3gwz_A          271 VYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-----TLFVDLLLLVLV-GGAERSESEFAALLE  344 (369)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-----HHHHHHHHHHHH-SCCCBCHHHHHHHHH
T ss_pred             EEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-----hhHhhHHHHhhc-CCccCCHHHHHHHHH
Confidence            68999999999999999999999999999999999999887654321     346888888764 899999999999999


Q ss_pred             hCCCCceEEEE-eCCCeEEEEEEC
Q 043826           82 GAGFSGMSCER-AIGNLWVMEFYK  104 (104)
Q Consensus        82 ~aGf~~~~~~~-~~~~~~vie~~~  104 (104)
                      +|||+++++.+ ..+..++||++|
T Consensus       345 ~aGf~~~~~~~~~~~~~svie~~~  368 (369)
T 3gwz_A          345 KSGLRVERSLPCGAGPVRIVEIRR  368 (369)
T ss_dssp             TTTEEEEEEEECSSSSEEEEEEEE
T ss_pred             HCCCeEEEEEECCCCCcEEEEEEe
Confidence            99999999999 578999999986

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.84  E-value=1.1e-20  Score=131.12  Aligned_cols=94  Identities=24%  Similarity=0.375  Sum_probs=82.8

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +|+++++||+|+|+++.++|++++++|+|||+++|.|.+.++.  .+     ...+|+.|+... +|+.||.+||.++++
T Consensus       238 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~~-----~~~~d~~~~~~~-~~~~~t~~e~~~ll~  309 (332)
T 3i53_A          238 GYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE--HA-----GTGMDLRMLTYF-GGKERSLAELGELAA  309 (332)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-----C-----CHHHHHHHHHHH-SCCCCCHHHHHHHHH
T ss_pred             EEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC--Cc-----cHHHHHHHHhhC-CCCCCCHHHHHHHHH
Confidence            6889999999999999999999999999999999999988765  22     136888887764 899999999999999


Q ss_pred             hCCCCceEEEEeCCCeEEEEEEC
Q 043826           82 GAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        82 ~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      +|||+.+++.+.++ .++||++|
T Consensus       310 ~aGf~~~~~~~~~~-~~vie~r~  331 (332)
T 3i53_A          310 QAGLAVRAAHPISY-VSIVEMTA  331 (332)
T ss_dssp             HTTEEEEEEEECSS-SEEEEEEE
T ss_pred             HCCCEEEEEEECCC-cEEEEEee
Confidence            99999999999988 99999985

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.83  E-value=1.9e-20  Score=131.23  Aligned_cols=102  Identities=34%  Similarity=0.546  Sum_probs=87.4

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCC---CCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPE---DGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMT   78 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~p---gg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~   78 (104)
                      +|+++++||+|+|+++.++|++++++|+|   ||+++|.|.+.++....+........+|+.|+... +|+.||.+||.+
T Consensus       254 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g~~~t~~e~~~  332 (358)
T 1zg3_A          254 AVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMF-LGKERTKQEWEK  332 (358)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHH-SCCCEEHHHHHH
T ss_pred             EEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccC-CCCCCCHHHHHH
Confidence            68999999999999999999999999999   99999999988765433211123456888887754 899999999999


Q ss_pred             HHHhCCCCceEEEEeCCCeEEEEEEC
Q 043826           79 LATGAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        79 ll~~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      ++++|||+.+++.+.++..++||++|
T Consensus       333 ll~~aGf~~~~~~~~~~~~~vie~~~  358 (358)
T 1zg3_A          333 LIYDAGFSSYKITPISGFKSLIEVYP  358 (358)
T ss_dssp             HHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred             HHHHcCCCeeEEEecCCCcEEEEEeC
Confidence            99999999999999888899999987

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.82  E-value=6.4e-20  Score=127.13  Aligned_cols=98  Identities=22%  Similarity=0.349  Sum_probs=85.8

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +|++++++|+|+|+++.++|++++++|+|||+++|.|.+.++...+ .   ....+|+.|+... +|+.||.+||.++++
T Consensus       236 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~-~---~~~~~~~~~~~~~-~~~~~t~~e~~~ll~  310 (334)
T 2ip2_A          236 IYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPS-P---MSVLWDVHLFMAC-AGRHRTTEEVVDLLG  310 (334)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCC-H---HHHHHHHHHHHHH-SCCCCBHHHHHHHHH
T ss_pred             EEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc-c---hhHHhhhHhHhhC-CCcCCCHHHHHHHHH
Confidence            5789999999999999999999999999999999999987765332 1   2356788887655 799999999999999


Q ss_pred             hCCCCceEEEEeCCCeEEEEEEC
Q 043826           82 GAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        82 ~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      +|||+.+++.+.++..++||++|
T Consensus       311 ~aGf~~~~~~~~~~~~~~i~~~~  333 (334)
T 2ip2_A          311 RGGFAVERIVDLPMETRMIVAAR  333 (334)
T ss_dssp             HTTEEEEEEEEETTTEEEEEEEE
T ss_pred             HCCCceeEEEECCCCCEEEEEEe
Confidence            99999999999988899999986

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.81  E-value=6.5e-20  Score=129.13  Aligned_cols=102  Identities=43%  Similarity=0.716  Sum_probs=84.5

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +|+++++||+|+|+++.++|++++++|+|||+++|.|...++....+...+....+|+.|+.. .+|+.||.+||.++++
T Consensus       270 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~t~~e~~~ll~  348 (372)
T 1fp1_D          270 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFIT-VGGRERTEKQYEKLSK  348 (372)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHH-HSCCCEEHHHHHHHHH
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhc-cCCccCCHHHHHHHHH
Confidence            578999999999999999999999999999999999998876643332111245678877764 3789999999999999


Q ss_pred             hCCCCceEEEEeC-CCeEEEEEEC
Q 043826           82 GAGFSGMSCERAI-GNLWVMEFYK  104 (104)
Q Consensus        82 ~aGf~~~~~~~~~-~~~~vie~~~  104 (104)
                      +|||+.+++.+.. +..+|||++|
T Consensus       349 ~aGf~~~~~~~~~~~~~~vie~~~  372 (372)
T 1fp1_D          349 LSGFSKFQVACRAFNSLGVMEFYK  372 (372)
T ss_dssp             HTTCSEEEEEEEETTTEEEEEEEC
T ss_pred             HCCCceEEEEEcCCCCeEEEEEeC
Confidence            9999999999854 4269999987

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.81  E-value=1.4e-19  Score=126.60  Aligned_cols=101  Identities=29%  Similarity=0.549  Sum_probs=85.6

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCC---CCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPE---DGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMT   78 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~p---gg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~   78 (104)
                      +|+++++||+|+|+++.++|++++++|+|   ||+++|.|...++....+........+|+.|+. . +|+.||.+||.+
T Consensus       249 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~~t~~e~~~  326 (352)
T 1fp2_A          249 AVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEWKK  326 (352)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHHHH
T ss_pred             EEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCCCCCHHHHHH
Confidence            58899999999999999999999999999   999999999887654321111123467888776 4 589999999999


Q ss_pred             HHHhCCCCceEEEEeCCCeEEEEEEC
Q 043826           79 LATGAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        79 ll~~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      ++++|||+.+++.+.++..+|||++|
T Consensus       327 ll~~aGf~~~~~~~~~~~~~vie~~~  352 (352)
T 1fp2_A          327 LFIEAGFQHYKISPLTGFLSLIEIYP  352 (352)
T ss_dssp             HHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             HHHHCCCCeeEEEecCCCcEEEEEeC
Confidence            99999999999999888899999987

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.78  E-value=9e-19  Score=122.10  Aligned_cols=98  Identities=12%  Similarity=0.185  Sum_probs=83.9

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +|++++++|+|+|+++.++|++++++|+|||+++|.|.+.++.+..+.   ....+|+.|+..+.+|+.||.+||.++++
T Consensus       251 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~t~~e~~~ll~  327 (352)
T 3mcz_A          251 VVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPA---LSADFSLHMMVNTNHGELHPTPWIAGVVR  327 (352)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSH---HHHHHHHHHHHHSTTCCCCCHHHHHHHHH
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCc---hHHHhhHHHHhhCCCCCcCCHHHHHHHHH
Confidence            578999999999999999999999999999999999999877654332   23568888887666899999999999999


Q ss_pred             hCCCCceEEEEeCCCeEEEEEEC
Q 043826           82 GAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        82 ~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      +|||++++..  .+..+++.++|
T Consensus       328 ~aGf~~~~~~--~g~~~l~~a~k  348 (352)
T 3mcz_A          328 DAGLAVGERS--IGRYTLLIGQR  348 (352)
T ss_dssp             HTTCEEEEEE--ETTEEEEEEEC
T ss_pred             HCCCceeeec--cCceEEEEEec
Confidence            9999999843  46688998886

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.77  E-value=5.5e-19  Score=124.19  Aligned_cols=102  Identities=14%  Similarity=0.162  Sum_probs=80.0

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcc-cchhhhhhhhhhhcCCCceecCHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIE-SKSNFHFDVLMMIQRPDGKERTRHEFMTLA   80 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~-~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll   80 (104)
                      +|+++++||+|+|+++.++|++++++|+|||+++|.|.+.++.+..+.. .......++.|+.. .+++.||.+||.+++
T Consensus       251 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~e~~~ll  329 (363)
T 3dp7_A          251 AVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMAN-GNSKMFHSDDLIRCI  329 (363)
T ss_dssp             EEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSC-SSCCSCCHHHHHHHH
T ss_pred             EEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhC-CCCcccCHHHHHHHH
Confidence            5889999999999999999999999999999999999988765422110 00112233444433 368899999999999


Q ss_pred             HhCCCCceEEEEeC-CCeEEEEEEC
Q 043826           81 TGAGFSGMSCERAI-GNLWVMEFYK  104 (104)
Q Consensus        81 ~~aGf~~~~~~~~~-~~~~vie~~~  104 (104)
                      ++|||+.+++.+.. .+.++||++|
T Consensus       330 ~~AGf~~v~~~~~~g~~~svi~~~~  354 (363)
T 3dp7_A          330 ENAGLEVEEIQDNIGLGHSILQCRL  354 (363)
T ss_dssp             HTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred             HHcCCeEEEEEeCCCCCceEEEEee
Confidence            99999999998764 5699999875

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.73  E-value=1.3e-17  Score=115.20  Aligned_cols=99  Identities=21%  Similarity=0.310  Sum_probs=84.5

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      ++++++++|+|+|+++.++|++++++|+|||+++|.|...++.+..+.   ....+++.|+....+++.||.++|.++++
T Consensus       235 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~t~~~~~~ll~  311 (335)
T 2r3s_A          235 LVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPP---DAAAFSLVMLATTPNGDAYTFAEYESMFS  311 (335)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSH---HHHHHHHHHHHHSSSCCCCCHHHHHHHHH
T ss_pred             EEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCch---HHHHHHHHHHeeCCCCCcCCHHHHHHHHH
Confidence            578899999999999999999999999999999999998776543332   23567888877655889999999999999


Q ss_pred             hCCCCceEEEEeCCCeEEEEEE
Q 043826           82 GAGFSGMSCERAIGNLWVMEFY  103 (104)
Q Consensus        82 ~aGf~~~~~~~~~~~~~vie~~  103 (104)
                      ++||+.+++.+..+..++|+++
T Consensus       312 ~aGf~~~~~~~~~~~~~~i~~~  333 (335)
T 2r3s_A          312 NAGFSHSQLHSLPTTQQQVIVA  333 (335)
T ss_dssp             HTTCSEEEEECCTTSSSEEEEE
T ss_pred             HCCCCeeeEEECCCCceeEEEe
Confidence            9999999999988778888775

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.73  E-value=5.1e-18  Score=118.56  Aligned_cols=98  Identities=20%  Similarity=0.323  Sum_probs=83.2

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee-cCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELM-LPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLA   80 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~-~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll   80 (104)
                      +|++++++|+|+|+++.++|++++++|+|||+++|.|.. .++.....    ....+++.|+... +++.||.++|.+++
T Consensus       252 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~t~~e~~~ll  326 (360)
T 1tw3_A          252 AIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNE----QFTELDLRMLVFL-GGALRTREKWDGLA  326 (360)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSH----HHHHHHHHHHHHH-SCCCCBHHHHHHHH
T ss_pred             EEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcc----hhhhccHHHhhhc-CCcCCCHHHHHHHH
Confidence            578999999999999999999999999999999999988 65543221    2345777777654 78999999999999


Q ss_pred             HhCCCCceEEEEeCCC-----eEEEEEEC
Q 043826           81 TGAGFSGMSCERAIGN-----LWVMEFYK  104 (104)
Q Consensus        81 ~~aGf~~~~~~~~~~~-----~~vie~~~  104 (104)
                      ++|||+.+++.+.++.     .++||++|
T Consensus       327 ~~aGf~~~~~~~~~~~~~~~~~~~i~~~~  355 (360)
T 1tw3_A          327 ASAGLVVEEVRQLPSPTIPYDLSLLVLAP  355 (360)
T ss_dssp             HHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             HHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence            9999999999988765     89999986

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.71  E-value=5.6e-17  Score=113.54  Aligned_cols=96  Identities=8%  Similarity=0.206  Sum_probs=79.4

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCcee----cCHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKE----RTRHEFM   77 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~----rt~~e~~   77 (104)
                      +|++++++|+|+|+++.++|++++++|+|||+++|.|...++. ..+..   ...+  .|+....+|+.    |+.++|.
T Consensus       259 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~~---~~~~--~~~~~~~~g~~~~~~~t~~e~~  332 (359)
T 1x19_A          259 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP-ENPNF---DYLS--HYILGAGMPFSVLGFKEQARYK  332 (359)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT-TSCCH---HHHH--HHGGGGGSSCCCCCCCCGGGHH
T ss_pred             EEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC-CCchH---HHHH--HHHHhcCCCCcccCCCCHHHHH
Confidence            5789999999999999999999999999999999999987765 22221   1222  44443345777    9999999


Q ss_pred             HHHHhCCCCceEEEEeCCCeEEEEEEC
Q 043826           78 TLATGAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        78 ~ll~~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      +++++|||+.+++.+.+ ..++|+++|
T Consensus       333 ~ll~~aGf~~v~~~~~~-~~~vi~a~k  358 (359)
T 1x19_A          333 EILESLGYKDVTMVRKY-DHLLVQAVK  358 (359)
T ss_dssp             HHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred             HHHHHCCCceEEEEecC-CceEEEEeC
Confidence            99999999999999987 889999987

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.71  E-value=1.3e-17  Score=116.99  Aligned_cols=98  Identities=23%  Similarity=0.401  Sum_probs=79.8

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee--ecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL--MLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTL   79 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~--~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~l   79 (104)
                      ++++++++|+|+|+++.++|++++++|+|||+++|.|.  +.++....    .....+++.|+... +|+.|+.++|.++
T Consensus       251 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~l  325 (374)
T 1qzz_A          251 VVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADR----FFSTLLDLRMLTFM-GGRVRTRDEVVDL  325 (374)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------H----HHHHHHHHHHHHHH-SCCCCCHHHHHHH
T ss_pred             EEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCc----chhhhcchHHHHhC-CCcCCCHHHHHHH
Confidence            57899999999999999999999999999999999998  76554321    12346777777654 7899999999999


Q ss_pred             HHhCCCCceEEEEeCCCe-----EEEEEEC
Q 043826           80 ATGAGFSGMSCERAIGNL-----WVMEFYK  104 (104)
Q Consensus        80 l~~aGf~~~~~~~~~~~~-----~vie~~~  104 (104)
                      ++++||+.+++...++..     ++||++|
T Consensus       326 l~~aGf~~~~~~~~~~~~~~~~~~~i~~~~  355 (374)
T 1qzz_A          326 AGSAGLALASERTSGSTTLPFDFSILEFTA  355 (374)
T ss_dssp             HHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             HHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence            999999999999988777     9999975

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.20  E-value=8.6e-11  Score=77.14  Aligned_cols=100  Identities=20%  Similarity=0.185  Sum_probs=70.2

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhh------------hh-hhhhcCCCce
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHF------------DV-LMMIQRPDGK   69 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~------------~l-~m~~~~~~g~   69 (104)
                      .+...++|++++++..++|+++++.|+|||++++.+...++.......  ....+            ++ ..........
T Consensus       113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (234)
T 3dtn_A          113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENL--NKTIWRQYVENSGLTEEEIAAGYERSKLDK  190 (234)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHH--HHHHHHHHHHTSSCCHHHHHTTC----CCC
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhH--HHHHHHHHHHhcCCCHHHHHHHHHhccccc
Confidence            456789999999988899999999999999999999876544211000  00000            00 0000012345


Q ss_pred             ecCHHHHHHHHHhCCCCceEEEEeCCCeEEEEEEC
Q 043826           70 ERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        70 ~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      .+|.+++.+++++|||+.+++.....+++++-++|
T Consensus       191 ~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~  225 (234)
T 3dtn_A          191 DIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRK  225 (234)
T ss_dssp             CCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred             ccCHHHHHHHHHHcCCCceeeeeeecceeEEEEEe
Confidence            57899999999999999999988877788877664

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.16  E-value=5.9e-11  Score=80.25  Aligned_cols=101  Identities=15%  Similarity=0.012  Sum_probs=65.4

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhh-c-----------CCC-ce
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMI-Q-----------RPD-GK   69 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~-~-----------~~~-g~   69 (104)
                      .+...+||++++++..++|++++++|+|||++++.|...++++...... .....+..... .           ..+ -.
T Consensus       143 v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~  221 (261)
T 4gek_A          143 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELL-FNMHHDFKRANGYSELEISQKRSMLENVML  221 (261)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHH-HHHHHHHHHHTTGGGSTTHHHHHHHHHHCC
T ss_pred             ceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHhhhccccc
Confidence            3456799999999989999999999999999999998776543110000 00000000000 0           000 12


Q ss_pred             ecCHHHHHHHHHhCCCCceEEEEeCCCeEEEEEEC
Q 043826           70 ERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        70 ~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      ..|.+++.++|++|||+.++++--.-++..+.++|
T Consensus       222 ~~s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K  256 (261)
T 4gek_A          222 TDSVETHKARLHKAGFEHSELWFQCFNFGSLVALK  256 (261)
T ss_dssp             CBCHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             CCCHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence            36889999999999999998864433444455655

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.01  E-value=2.9e-09  Score=69.07  Aligned_cols=83  Identities=10%  Similarity=-0.001  Sum_probs=64.9

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|+++|.  ..+|+++++.|+|||++++.+.........+.                 ....++.+++.+++++
T Consensus       110 v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~  170 (219)
T 3dh0_A          110 IFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDWKKEERDKGPP-----------------PEEVYSEWEVGLILED  170 (219)
T ss_dssp             EEEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSCC-----------------GGGSCCHHHHHHHHHH
T ss_pred             EEeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEEecccccccCCc-----------------hhcccCHHHHHHHHHH
Confidence            4567899999875  79999999999999999999976554322111                 1123588999999999


Q ss_pred             CCCCceEEEEeCCCeEEEEEEC
Q 043826           83 AGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        83 aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      +||+.+++....+....+.++|
T Consensus       171 ~Gf~~~~~~~~~~~~~~~~~~k  192 (219)
T 3dh0_A          171 AGIRVGRVVEVGKYCFGVYAMI  192 (219)
T ss_dssp             TTCEEEEEEEETTTEEEEEEEC
T ss_pred             CCCEEEEEEeeCCceEEEEEEe
Confidence            9999999998887777776665

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.95  E-value=4.2e-10  Score=73.76  Aligned_cols=100  Identities=13%  Similarity=0.089  Sum_probs=63.6

Q ss_pred             eccccccCCh-HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcc------------cc--------hhhhhhhhhhh
Q 043826            5 TLTILHDWND-EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIE------------SK--------SNFHFDVLMMI   63 (104)
Q Consensus         5 ~~~vlH~~~d-~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~------------~~--------~~~~~~l~m~~   63 (104)
                      ...++|+.++ ++..++|+++++.|+|||++++.+...++...+...            ..        ......+.++.
T Consensus       107 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (239)
T 3bxo_A          107 MFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTV  186 (239)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             cCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEE
Confidence            4458888865 678999999999999999999987655443211000            00        00001111111


Q ss_pred             cCCCc-----------eecCHHHHHHHHHhCCCCceEEEEeCCCeEEEEEEC
Q 043826           64 QRPDG-----------KERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        64 ~~~~g-----------~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      ...++           +.+|.++|.++|++|||+++.+....+...++.++|
T Consensus       187 ~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K  238 (239)
T 3bxo_A          187 ADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP  238 (239)
T ss_dssp             EETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred             ecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence            11111           346999999999999997766655456788888876

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.95  E-value=6.8e-09  Score=67.31  Aligned_cols=98  Identities=13%  Similarity=0.104  Sum_probs=63.7

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhh---hh-hhcCCCceecCHHHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDV---LM-MIQRPDGKERTRHEFMT   78 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l---~m-~~~~~~g~~rt~~e~~~   78 (104)
                      .+...++|++++++...+|+++++.|+|||++++.+...+.....   ........-   .. ..........|.+++.+
T Consensus       110 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (220)
T 3hnr_A          110 IVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAY---DKTVEAAKQRGFHQLANDLQTEYYTRIPVMQT  186 (220)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHH---HHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHH
T ss_pred             EEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHH---HHHHHHHHhCCCccchhhcchhhcCCHHHHHH
Confidence            456789999999988889999999999999999998665432110   000000000   00 00000112348899999


Q ss_pred             HHHhCCCCceEEEEeCCCeEEEEEEC
Q 043826           79 LATGAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        79 ll~~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      +++++||+++.+. ..+...++++.|
T Consensus       187 ~l~~aGf~v~~~~-~~~~~w~~~~~~  211 (220)
T 3hnr_A          187 IFENNGFHVTFTR-LNHFVWVMEATK  211 (220)
T ss_dssp             HHHHTTEEEEEEE-CSSSEEEEEEEE
T ss_pred             HHHHCCCEEEEee-ccceEEEEeehh
Confidence            9999999766554 446777777654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.92  E-value=3.1e-09  Score=68.62  Aligned_cols=87  Identities=16%  Similarity=0.055  Sum_probs=55.4

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCce-------ecCHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGK-------ERTRHE   75 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~-------~rt~~e   75 (104)
                      .+...++|++++++...+|+++++.|+|||++++.+...+...............-...   .+.+.       ..+.++
T Consensus       111 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  187 (218)
T 3ou2_A          111 VFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRT---LQDGRSFRIVKVFRSPAE  187 (218)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEE---CTTSCEEEEECCCCCHHH
T ss_pred             EEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeee---cCCcchhhHhhcCCCHHH
Confidence            45678999999998999999999999999999999976533211100000000000000   11221       349999


Q ss_pred             HHHHHHhCCCCceEEEE
Q 043826           76 FMTLATGAGFSGMSCER   92 (104)
Q Consensus        76 ~~~ll~~aGf~~~~~~~   92 (104)
                      +.++++++||++.....
T Consensus       188 ~~~~l~~aGf~v~~~~~  204 (218)
T 3ou2_A          188 LTERLTALGWSCSVDEV  204 (218)
T ss_dssp             HHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHCCCEEEeeec
Confidence            99999999999554443

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.89  E-value=5.6e-09  Score=69.01  Aligned_cols=78  Identities=13%  Similarity=0.112  Sum_probs=60.6

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+..+++|++++++..++|+++++.|+|||++++.+.......   .      ..+.     ......++.++|.+++++
T Consensus       162 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~------~~~~-----~~~~~~~~~~~~~~~l~~  227 (254)
T 1xtp_A          162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR---F------LVDK-----EDSSLTRSDIHYKRLFNE  227 (254)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC---E------EEET-----TTTEEEBCHHHHHHHHHH
T ss_pred             EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---c------eecc-----cCCcccCCHHHHHHHHHH
Confidence            4667899999998899999999999999999999997543321   0      1111     124556899999999999


Q ss_pred             CCCCceEEEEeC
Q 043826           83 AGFSGMSCERAI   94 (104)
Q Consensus        83 aGf~~~~~~~~~   94 (104)
                      +||+++++....
T Consensus       228 aGf~~~~~~~~~  239 (254)
T 1xtp_A          228 SGVRVVKEAFQE  239 (254)
T ss_dssp             HTCCEEEEEECT
T ss_pred             CCCEEEEeeecC
Confidence            999999987764

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.89  E-value=2e-08  Score=67.73  Aligned_cols=91  Identities=10%  Similarity=0.142  Sum_probs=63.1

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCC-----CCcccchhhhhhhhhhhcCCCceecCHHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPN-----TSIESKSNFHFDVLMMIQRPDGKERTRHEFM   77 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~-----~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~   77 (104)
                      .+...++|++++++..++|+++++.|+|||++++.+...+....     .+.........+......++++...|.+++.
T Consensus       133 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  212 (287)
T 1kpg_A          133 IVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQ  212 (287)
T ss_dssp             EEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHH
T ss_pred             EEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHH
Confidence            35677999998777899999999999999999999987653211     0100000011111111123467778999999


Q ss_pred             HHHHhCCCCceEEEEe
Q 043826           78 TLATGAGFSGMSCERA   93 (104)
Q Consensus        78 ~ll~~aGf~~~~~~~~   93 (104)
                      ++++++||+++++...
T Consensus       213 ~~l~~aGf~~~~~~~~  228 (287)
T 1kpg_A          213 ECASANGFTVTRVQSL  228 (287)
T ss_dssp             HHHHTTTCEEEEEEEC
T ss_pred             HHHHhCCcEEEEEEeC
Confidence            9999999999988765

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.88  E-value=1.3e-09  Score=72.72  Aligned_cols=100  Identities=16%  Similarity=0.105  Sum_probs=63.6

Q ss_pred             ecc-ccccCCh-HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccc--------------------hhhhhhhhhh
Q 043826            5 TLT-ILHDWND-EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESK--------------------SNFHFDVLMM   62 (104)
Q Consensus         5 ~~~-vlH~~~d-~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~--------------------~~~~~~l~m~   62 (104)
                      ... ++|++++ ++..++|+++++.|+|||++++.+...++.-.+.....                    ....+++.+.
T Consensus       116 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (263)
T 3pfg_A          116 CMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYL  195 (263)
T ss_dssp             ECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             EcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEE
Confidence            344 9999975 56789999999999999999997654443211100000                    0001111111


Q ss_pred             hcCCC-----------ceecCHHHHHHHHHhCCCCceEEEEeCCCeEEEEEEC
Q 043826           63 IQRPD-----------GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        63 ~~~~~-----------g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      ....+           .+.+|.+||.++|++|||+++++........++.++|
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K  248 (263)
T 3pfg_A          196 VAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP  248 (263)
T ss_dssp             EEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred             EecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence            11011           2346899999999999999998876666677777765

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.86  E-value=7.2e-09  Score=68.38  Aligned_cols=77  Identities=19%  Similarity=0.247  Sum_probs=61.7

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+..+++|++++++..++|+++++.|+|||++++.+...+.   ..       .++.     ..+...++.++|.+++++
T Consensus       150 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---~~-------~~~~-----~~~~~~~~~~~~~~~l~~  214 (241)
T 2ex4_A          150 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE---GV-------ILDD-----VDSSVCRDLDVVRRIICS  214 (241)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS---SE-------EEET-----TTTEEEEBHHHHHHHHHH
T ss_pred             EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC---cc-------eecc-----cCCcccCCHHHHHHHHHH
Confidence            45678999999988889999999999999999999987654   11       1111     124556799999999999


Q ss_pred             CCCCceEEEEeC
Q 043826           83 AGFSGMSCERAI   94 (104)
Q Consensus        83 aGf~~~~~~~~~   94 (104)
                      +||+++++....
T Consensus       215 aGf~~~~~~~~~  226 (241)
T 2ex4_A          215 AGLSLLAEERQE  226 (241)
T ss_dssp             TTCCEEEEEECC
T ss_pred             cCCeEEEeeecC
Confidence            999999988764

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.86  E-value=7e-09  Score=66.57  Aligned_cols=86  Identities=10%  Similarity=-0.047  Sum_probs=64.2

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|++++++..++|+++++.|+|||++++.+...+...   .       ++-  .  ......++.+++.+++++
T Consensus       106 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~---~-------~~~--~--~~~~~~~~~~~~~~~l~~  171 (203)
T 3h2b_A          106 LLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLE---P-------MYH--P--VATAYRWPLPELAQALET  171 (203)
T ss_dssp             EEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCE---E-------ECC--S--SSCEEECCHHHHHHHHHH
T ss_pred             EEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchh---h-------hhc--h--hhhhccCCHHHHHHHHHH
Confidence            3566799999988889999999999999999999886543310   0       110  0  114556899999999999


Q ss_pred             CCCCceEEEEeC-CCeEEEEE
Q 043826           83 AGFSGMSCERAI-GNLWVMEF  102 (104)
Q Consensus        83 aGf~~~~~~~~~-~~~~vie~  102 (104)
                      +||+++++.... .+++.+..
T Consensus       172 ~Gf~~~~~~~~~~~p~~~l~~  192 (203)
T 3h2b_A          172 AGFQVTSSHWDPRFPHAYLTA  192 (203)
T ss_dssp             TTEEEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEecCCCcchhhhh
Confidence            999999988875 35555543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.85  E-value=4.8e-09  Score=71.22  Aligned_cols=79  Identities=10%  Similarity=0.056  Sum_probs=57.1

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +.++..+||+++|++..++|++++++|+|||++++.+...+.   +....   ...+....... ....||.+|+.++| 
T Consensus       160 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~~~~---~~~~~~~~~~~-~~~~~s~~ei~~~l-  231 (274)
T 2qe6_A          160 AIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LPAQQ---KLARITRENLG-EGWARTPEEIERQF-  231 (274)
T ss_dssp             EEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CHHHH---HHHHHHHHHHS-CCCCBCHHHHHHTT-
T ss_pred             EEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hHHHH---HHHHHHHhcCC-CCccCCHHHHHHHh-
Confidence            356788999999988999999999999999999999976532   11111   11221111111 45679999999999 


Q ss_pred             hCCCCceE
Q 043826           82 GAGFSGMS   89 (104)
Q Consensus        82 ~aGf~~~~   89 (104)
                       +||++++
T Consensus       232 -~G~~l~~  238 (274)
T 2qe6_A          232 -GDFELVE  238 (274)
T ss_dssp             -TTCEECT
T ss_pred             -CCCeEcc
Confidence             6998765

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.82  E-value=1e-08  Score=64.07  Aligned_cols=80  Identities=11%  Similarity=0.137  Sum_probs=61.7

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|+++|.  ..+++++++.|+|||++++.+...+.....+.                 ....++.+++.++++ 
T Consensus        79 v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~-  138 (170)
T 3i9f_A           79 ILFANSFHDMDDK--QHVISEVKRILKDDGRVIIIDWRKENTGIGPP-----------------LSIRMDEKDYMGWFS-  138 (170)
T ss_dssp             EEEESCSTTCSCH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSSC-----------------GGGCCCHHHHHHHTT-
T ss_pred             EEEccchhcccCH--HHHHHHHHHhcCCCCEEEEEEcCccccccCch-----------------HhhhcCHHHHHHHHh-
Confidence            4567899999765  79999999999999999999976554332211                 112268999999998 


Q ss_pred             CCCCceEEEEeCCCeEEEEEE
Q 043826           83 AGFSGMSCERAIGNLWVMEFY  103 (104)
Q Consensus        83 aGf~~~~~~~~~~~~~vie~~  103 (104)
                       ||+.+++.........+.+.
T Consensus       139 -Gf~~~~~~~~~~~~~~l~~~  158 (170)
T 3i9f_A          139 -NFVVEKRFNPTPYHFGLVLK  158 (170)
T ss_dssp             -TEEEEEEECSSTTEEEEEEE
T ss_pred             -CcEEEEccCCCCceEEEEEe
Confidence             99999999888766666654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.81  E-value=7.3e-10  Score=71.45  Aligned_cols=96  Identities=13%  Similarity=0.139  Sum_probs=60.5

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhh-hhhhhhhcCCCceecCHHHHHHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFH-FDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~-~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      .+...++|+++|.  .++|+++++.|+|||++++.+...+.............. ........ .+...++.+++.++++
T Consensus       115 v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~  191 (219)
T 3dlc_A          115 IVSRGSVFFWEDV--ATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNR-KNISQENVERFQNVLD  191 (219)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHH-HHSSHHHHHHHHHHHH
T ss_pred             EEECchHhhccCH--HHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhh-hccccCCHHHHHHHHH
Confidence            4566799999765  789999999999999999988554321100000000000 00000000 1233457899999999


Q ss_pred             hCCCCceEEEEeCCCeEEEE
Q 043826           82 GAGFSGMSCERAIGNLWVME  101 (104)
Q Consensus        82 ~aGf~~~~~~~~~~~~~vie  101 (104)
                      ++||+.+++........++-
T Consensus       192 ~aGf~~v~~~~~~~~~~~~~  211 (219)
T 3dlc_A          192 EIGISSYEIILGDEGFWIII  211 (219)
T ss_dssp             HHTCSSEEEEEETTEEEEEE
T ss_pred             HcCCCeEEEEecCCceEEEE
Confidence            99999999988766655443

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.80  E-value=6.6e-09  Score=69.18  Aligned_cols=84  Identities=13%  Similarity=0.191  Sum_probs=59.3

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|+++|.  ..+|++++++|+|||++++.+...++.+   ....  .......+....+...++.++|.+++++
T Consensus       107 V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~  179 (260)
T 1vl5_A          107 VTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEND---AFDV--FYNYVEKERDYSHHRAWKKSDWLKMLEE  179 (260)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSH---HHHH--HHHHHHHHHCTTCCCCCBHHHHHHHHHH
T ss_pred             EEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCCH---HHHH--HHHHHHHhcCccccCCCCHHHHHHHHHH
Confidence            4566799999986  6999999999999999999998765431   1111  1111111111123466899999999999


Q ss_pred             CCCCceEEEEe
Q 043826           83 AGFSGMSCERA   93 (104)
Q Consensus        83 aGf~~~~~~~~   93 (104)
                      +||+.+++...
T Consensus       180 aGf~~~~~~~~  190 (260)
T 1vl5_A          180 AGFELEELHCF  190 (260)
T ss_dssp             HTCEEEEEEEE
T ss_pred             CCCeEEEEEEe
Confidence            99998877654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.79  E-value=4.5e-08  Score=66.83  Aligned_cols=101  Identities=12%  Similarity=0.066  Sum_probs=63.1

Q ss_pred             EeccccccCChHH-HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcc-c--chh----hhhhhhhhhcCCCc--eecCH
Q 043826            4 CTLTILHDWNDEH-CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIE-S--KSN----FHFDVLMMIQRPDG--KERTR   73 (104)
Q Consensus         4 ~~~~vlH~~~d~~-~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~-~--~~~----~~~~l~m~~~~~~g--~~rt~   73 (104)
                      +...++|+++|.+ ..++++++++.|+|||++++.+...+........ .  ...    ............++  ..++.
T Consensus       192 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (305)
T 3ocj_A          192 TSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTH  271 (305)
T ss_dssp             ECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCH
T ss_pred             EECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCH
Confidence            4457899997665 5679999999999999999988665433221100 0  000    00000000001111  34799


Q ss_pred             HHHHHHHHhCCCCceEEEEeC-CCeEEEEEEC
Q 043826           74 HEFMTLATGAGFSGMSCERAI-GNLWVMEFYK  104 (104)
Q Consensus        74 ~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~  104 (104)
                      +++.++++++||+++++.... .....+.++|
T Consensus       272 ~~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~K  303 (305)
T 3ocj_A          272 AQTRAQLEEAGFTDLRFEDDRARLFPTVIARK  303 (305)
T ss_dssp             HHHHHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred             HHHHHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence            999999999999999988754 3445555554

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.78  E-value=1.6e-08  Score=67.03  Aligned_cols=84  Identities=17%  Similarity=0.237  Sum_probs=61.5

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|++++++...+|+++++.|+|||++++.+...+......  .    .+.-. .. ..+...++.+++.+++++
T Consensus       124 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~--~----~~~~~-~~-~~~~~~~~~~~~~~~l~~  195 (266)
T 3ujc_A          124 IYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWD--D----EFKEY-VK-QRKYTLITVEEYADILTA  195 (266)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCC--H----HHHHH-HH-HHTCCCCCHHHHHHHHHH
T ss_pred             EeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccch--H----HHHHH-Hh-cCCCCCCCHHHHHHHHHH
Confidence            3567799999988899999999999999999999998765421111  0    11110 11 013446799999999999


Q ss_pred             CCCCceEEEEeC
Q 043826           83 AGFSGMSCERAI   94 (104)
Q Consensus        83 aGf~~~~~~~~~   94 (104)
                      +||+.+++....
T Consensus       196 ~Gf~~~~~~~~~  207 (266)
T 3ujc_A          196 CNFKNVVSKDLS  207 (266)
T ss_dssp             TTCEEEEEEECH
T ss_pred             cCCeEEEEEeCC
Confidence            999999887653

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.77  E-value=8.4e-09  Score=68.10  Aligned_cols=84  Identities=14%  Similarity=0.242  Sum_probs=59.2

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|+|+|.  .++|+++++.|+|||++++.+...++.+   ....  .......+....+...++.++|.+++++
T Consensus        91 v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~  163 (239)
T 1xxl_A           91 ITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDP---VLDE--FVNHLNRLRDPSHVRESSLSEWQAMFSA  163 (239)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSH---HHHH--HHHHHHHHHCTTCCCCCBHHHHHHHHHH
T ss_pred             EEECCchhhccCH--HHHHHHHHHHcCCCcEEEEEEcCCCCCh---hHHH--HHHHHHHhccccccCCCCHHHHHHHHHH
Confidence            3456699999875  7899999999999999999998765431   1111  1111111111224566899999999999


Q ss_pred             CCCCceEEEEe
Q 043826           83 AGFSGMSCERA   93 (104)
Q Consensus        83 aGf~~~~~~~~   93 (104)
                      +||+.+++...
T Consensus       164 aGf~~~~~~~~  174 (239)
T 1xxl_A          164 NQLAYQDIQKW  174 (239)
T ss_dssp             TTEEEEEEEEE
T ss_pred             CCCcEEEEEee
Confidence            99998877654

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.77  E-value=9.8e-09  Score=69.82  Aligned_cols=102  Identities=8%  Similarity=0.071  Sum_probs=64.5

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCccc--ch----hh-------------hhhhhhhh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIES--KS----NF-------------HFDVLMMI   63 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~--~~----~~-------------~~~l~m~~   63 (104)
                      ++...++|.+++++..++|+++++.|+|||++++.....+.....+...  ..    ..             ...+....
T Consensus       155 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  234 (299)
T 3g2m_A          155 VISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHP  234 (299)
T ss_dssp             EECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEEEEEEE
T ss_pred             EECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEEEEEEe
Confidence            3345778888888899999999999999999998876543210000000  00    00             00000000


Q ss_pred             ----------cCCCceecCHHHHHHHHHhCCCCceEEEEeC------CCeEEEEEEC
Q 043826           64 ----------QRPDGKERTRHEFMTLATGAGFSGMSCERAI------GNLWVMEFYK  104 (104)
Q Consensus        64 ----------~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~------~~~~vie~~~  104 (104)
                                .....+.+|.+++.++|++|||+++++....      ....++|+.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~~  291 (299)
T 3g2m_A          235 ADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAVM  291 (299)
T ss_dssp             SCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEEC
T ss_pred             ccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehhh
Confidence                      0001235799999999999999999999875      2356777753

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.75  E-value=5.2e-08  Score=66.66  Aligned_cols=91  Identities=14%  Similarity=0.230  Sum_probs=62.7

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCC----ccc-chhhhhhhhhhhcCCCceecCHHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTS----IES-KSNFHFDVLMMIQRPDGKERTRHEFM   77 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~----~~~-~~~~~~~l~m~~~~~~g~~rt~~e~~   77 (104)
                      .+...++|++++++..++|+++.+.|+|||++++.+...+......    ... ......+......++++..++.+++.
T Consensus       159 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  238 (318)
T 2fk8_A          159 IVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMV  238 (318)
T ss_dssp             EEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHH
T ss_pred             EEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHH
Confidence            3567799999888889999999999999999999998765421100    000 00000111111123467778999999


Q ss_pred             HHHHhCCCCceEEEEe
Q 043826           78 TLATGAGFSGMSCERA   93 (104)
Q Consensus        78 ~ll~~aGf~~~~~~~~   93 (104)
                      ++++++||+++++...
T Consensus       239 ~~l~~aGf~~~~~~~~  254 (318)
T 2fk8_A          239 EHGEKAGFTVPEPLSL  254 (318)
T ss_dssp             HHHHHTTCBCCCCEEC
T ss_pred             HHHHhCCCEEEEEEec
Confidence            9999999999987664

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.75  E-value=2.3e-08  Score=65.66  Aligned_cols=73  Identities=15%  Similarity=0.162  Sum_probs=57.9

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|++++++..++|+++++.|+|||++++.+.........+.                   ...+.+++.+++++
T Consensus       136 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~l~~  196 (235)
T 3lcc_A          136 IFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPP-------------------YKVDVSTFEEVLVP  196 (235)
T ss_dssp             EEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSS-------------------CCCCHHHHHHHHGG
T ss_pred             EEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCC-------------------ccCCHHHHHHHHHH
Confidence            35668999999888899999999999999999998865443221111                   11578999999999


Q ss_pred             CCCCceEEEEeC
Q 043826           83 AGFSGMSCERAI   94 (104)
Q Consensus        83 aGf~~~~~~~~~   94 (104)
                      +||+++++....
T Consensus       197 ~Gf~~~~~~~~~  208 (235)
T 3lcc_A          197 IGFKAVSVEENP  208 (235)
T ss_dssp             GTEEEEEEEECT
T ss_pred             cCCeEEEEEecC
Confidence            999999988764

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.73  E-value=5e-09  Score=68.11  Aligned_cols=99  Identities=9%  Similarity=0.029  Sum_probs=63.0

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhh---hh---------cC------
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLM---MI---------QR------   65 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m---~~---------~~------   65 (104)
                      +...++|.+..++..++|+++++.|+|||++++.+...+..... ............+   +.         .+      
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (227)
T 1ve3_A          108 IFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPR-LKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDS  186 (227)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGG-CCC---------CCEEEEETTTTEEEEEC-----C
T ss_pred             EEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHH-HHhhhhcccceeecccccCccccEEEEEeccchhh
Confidence            45567788888888999999999999999999998642211000 0000000000000   00         00      


Q ss_pred             --CCceecCHHHHHHHHHhCCCCceEEEEeCCCeEEEEEEC
Q 043826           66 --PDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        66 --~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                        .+...++. ++.+|++++||+.+++..++....+|+.+|
T Consensus       187 ~~~~~~~w~~-~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~  226 (227)
T 1ve3_A          187 FRVRFNVWGK-TGVELLAKLYFTKEAEEKVGNYSYLTVYNP  226 (227)
T ss_dssp             CEEEEECCCH-HHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred             heeehhhhch-HHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence              01222334 899999999999999999988888999876

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.72  E-value=8.4e-08  Score=63.16  Aligned_cols=81  Identities=12%  Similarity=0.146  Sum_probs=59.3

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|++++++...+|+++++.|+|||++++......    . ..    ...+.  .....+....+.+++.+++++
T Consensus       105 i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~-~~----~~~~~--~~~~~~~~~~~~~~l~~~l~~  173 (240)
T 3dli_A          105 VMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPT----S-LY----SLINF--YIDPTHKKPVHPETLKFILEY  173 (240)
T ss_dssp             EEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTT----S-HH----HHHHH--TTSTTCCSCCCHHHHHHHHHH
T ss_pred             EEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcc----h-hH----HHHHH--hcCccccccCCHHHHHHHHHH
Confidence            3567899999998889999999999999999998765321    1 00    11111  111124456789999999999


Q ss_pred             CCCCceEEEEeC
Q 043826           83 AGFSGMSCERAI   94 (104)
Q Consensus        83 aGf~~~~~~~~~   94 (104)
                      +||+++++....
T Consensus       174 aGf~~~~~~~~~  185 (240)
T 3dli_A          174 LGFRDVKIEFFE  185 (240)
T ss_dssp             HTCEEEEEEEEC
T ss_pred             CCCeEEEEEEec
Confidence            999999887764

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.70  E-value=4.2e-08  Score=66.43  Aligned_cols=81  Identities=14%  Similarity=0.145  Sum_probs=58.7

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|+++|  ..++|+++++.|+|||++++.+...+.......   ....+..  .  . .....+.+++.+++++
T Consensus       154 v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~---~~~~~~~--~--~-~~~~~~~~~~~~~l~~  223 (297)
T 2o57_A          154 IWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSS---IQPILDR--I--K-LHDMGSLGLYRSLAKE  223 (297)
T ss_dssp             EEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGG---GHHHHHH--H--T-CSSCCCHHHHHHHHHH
T ss_pred             EEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHH---HHHHHHH--h--c-CCCCCCHHHHHHHHHH
Confidence            456789999988  489999999999999999999987654422111   1111111  1  1 2234689999999999


Q ss_pred             CCCCceEEEEe
Q 043826           83 AGFSGMSCERA   93 (104)
Q Consensus        83 aGf~~~~~~~~   93 (104)
                      +||+++++...
T Consensus       224 aGf~~~~~~~~  234 (297)
T 2o57_A          224 CGLVTLRTFSR  234 (297)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCCeEEEEEEC
Confidence            99999988764

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.67  E-value=5.6e-08  Score=62.71  Aligned_cols=76  Identities=9%  Similarity=0.025  Sum_probs=57.0

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|++++++...+|+++++.|+|||++++.........    ..    ...       ..-..++.+++.+++++
T Consensus       106 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~----~~----~~~-------~~~~~~~~~~~~~~l~~  170 (211)
T 3e23_A          106 VWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEG----RD----KLA-------RYYNYPSEEWLRARYAE  170 (211)
T ss_dssp             EEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCE----EC----TTS-------CEECCCCHHHHHHHHHH
T ss_pred             EEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCccc----cc----ccc-------hhccCCCHHHHHHHHHh
Confidence            4567899999988899999999999999999999864332110    00    010       01234689999999999


Q ss_pred             CC-CCceEEEEe
Q 043826           83 AG-FSGMSCERA   93 (104)
Q Consensus        83 aG-f~~~~~~~~   93 (104)
                      +| |+++++...
T Consensus       171 aG~f~~~~~~~~  182 (211)
T 3e23_A          171 AGTWASVAVESS  182 (211)
T ss_dssp             HCCCSEEEEEEE
T ss_pred             CCCcEEEEEEec
Confidence            99 999988765

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.66  E-value=8.7e-08  Score=62.28  Aligned_cols=88  Identities=13%  Similarity=0.093  Sum_probs=58.7

Q ss_pred             EEeccccccCChHH-HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcC--------------CC
Q 043826            3 NCTLTILHDWNDEH-CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQR--------------PD   67 (104)
Q Consensus         3 y~~~~vlH~~~d~~-~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~--------------~~   67 (104)
                      .++..++|+++|.+ ..++|+++++.|+|||++++.+...+...  +... .....+.......              ..
T Consensus       105 v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (235)
T 3sm3_A          105 AVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL--KLYR-KRYLHDFPITKEEGSFLARDPETGETEFI  181 (235)
T ss_dssp             EEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS--HHHH-HHHHHHHHHHCSTTEEEEECTTTCCEEEE
T ss_pred             EEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH--HHHH-HHhhhhccchhhhcceEecccccCCccee
Confidence            45678999998754 67999999999999999999997553221  1110 0011111111000              01


Q ss_pred             ceecCHHHHHHHHHhCCCCceEEEEe
Q 043826           68 GKERTRHEFMTLATGAGFSGMSCERA   93 (104)
Q Consensus        68 g~~rt~~e~~~ll~~aGf~~~~~~~~   93 (104)
                      ...++.+++.++++++||+++++...
T Consensus       182 ~~~~~~~~l~~ll~~aGf~~~~~~~~  207 (235)
T 3sm3_A          182 AHHFTEKELVFLLTDCRFEIDYFRVK  207 (235)
T ss_dssp             EECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred             eEeCCHHHHHHHHHHcCCEEEEEEec
Confidence            24679999999999999999988654

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.66  E-value=4.9e-08  Score=65.23  Aligned_cols=84  Identities=14%  Similarity=0.059  Sum_probs=60.1

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|+++|.  .++|+++++.|+|||++++.+......... ...   ...+..... ..++..++.+++.+++++
T Consensus       133 v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-~~~---~~~~~~~~~-~~~~~~~~~~~~~~~l~~  205 (273)
T 3bus_A          133 VWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEG-AKK---EAVDAFRAG-GGVLSLGGIDEYESDVRQ  205 (273)
T ss_dssp             EEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCH-HHH---HHHHHHHHH-HTCCCCCCHHHHHHHHHH
T ss_pred             EEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCCh-hHH---HHHHHHHhh-cCccCCCCHHHHHHHHHH
Confidence            3567899999876  799999999999999999999876533211 100   111111111 135667899999999999


Q ss_pred             CCCCceEEEEe
Q 043826           83 AGFSGMSCERA   93 (104)
Q Consensus        83 aGf~~~~~~~~   93 (104)
                      +||+++++...
T Consensus       206 aGf~~~~~~~~  216 (273)
T 3bus_A          206 AELVVTSTVDI  216 (273)
T ss_dssp             TTCEEEEEEEC
T ss_pred             cCCeEEEEEEC
Confidence            99999988765

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.65  E-value=1.8e-07  Score=63.61  Aligned_cols=92  Identities=15%  Similarity=0.247  Sum_probs=62.9

Q ss_pred             EEeccccccCCh-------HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccc-----hhhhhhhhhhhcCCCcee
Q 043826            3 NCTLTILHDWND-------EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESK-----SNFHFDVLMMIQRPDGKE   70 (104)
Q Consensus         3 y~~~~vlH~~~d-------~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~-----~~~~~~l~m~~~~~~g~~   70 (104)
                      .+...++|+++|       +....+++++++.|+|||++++.+...++.........     .....+......++++..
T Consensus       141 v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  220 (302)
T 3hem_A          141 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRL  220 (302)
T ss_dssp             EEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCC
T ss_pred             EEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCC
Confidence            356679999955       56789999999999999999999987654321000000     000001111112357788


Q ss_pred             cCHHHHHHHHHhCCCCceEEEEeC
Q 043826           71 RTRHEFMTLATGAGFSGMSCERAI   94 (104)
Q Consensus        71 rt~~e~~~ll~~aGf~~~~~~~~~   94 (104)
                      .+.+++.++++++||+++++...+
T Consensus       221 ~s~~~~~~~l~~aGf~~~~~~~~~  244 (302)
T 3hem_A          221 PRISQVDYYSSNAGWKVERYHRIG  244 (302)
T ss_dssp             CCHHHHHHHHHHHTCEEEEEEECG
T ss_pred             CCHHHHHHHHHhCCcEEEEEEeCc
Confidence            999999999999999999887654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.62  E-value=9e-08  Score=62.72  Aligned_cols=81  Identities=15%  Similarity=0.128  Sum_probs=57.1

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+..+++|+++|.  ..+|+++++.|+|||++++.+.........   ........     .......++.+++.+++++
T Consensus       120 v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~l~~  189 (242)
T 3l8d_A          120 IMAINSLEWTEEP--LRALNEIKRVLKSDGYACIAILGPTAKPRE---NSYPRLYG-----KDVVCNTMMPWEFEQLVKE  189 (242)
T ss_dssp             EEEESCTTSSSCH--HHHHHHHHHHEEEEEEEEEEEECTTCGGGG---GGGGGGGT-----CCCSSCCCCHHHHHHHHHH
T ss_pred             EEEcChHhhccCH--HHHHHHHHHHhCCCeEEEEEEcCCcchhhh---hhhhhhcc-----ccccccCCCHHHHHHHHHH
Confidence            3567899999776  689999999999999999998643322111   11111111     1113455899999999999


Q ss_pred             CCCCceEEEEe
Q 043826           83 AGFSGMSCERA   93 (104)
Q Consensus        83 aGf~~~~~~~~   93 (104)
                      +||++++....
T Consensus       190 ~Gf~~~~~~~~  200 (242)
T 3l8d_A          190 QGFKVVDGIGV  200 (242)
T ss_dssp             TTEEEEEEEEE
T ss_pred             cCCEEEEeecc
Confidence            99999988765

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.59  E-value=1e-07  Score=61.68  Aligned_cols=71  Identities=17%  Similarity=0.214  Sum_probs=55.4

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhC
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGA   83 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~a   83 (104)
                      +...++| +++  ...+|+++++.|+|||++++.+....                           ..+.+++.++++++
T Consensus       120 ~~~~~l~-~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~  169 (215)
T 2zfu_A          120 VFCLSLM-GTN--IRDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKL  169 (215)
T ss_dssp             EEESCCC-SSC--HHHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHT
T ss_pred             EEehhcc-ccC--HHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHC
Confidence            4567887 444  47999999999999999999874210                           01788999999999


Q ss_pred             CCCceEEEEeCCCeEEEEEEC
Q 043826           84 GFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        84 Gf~~~~~~~~~~~~~vie~~~  104 (104)
                      ||++++.....+.+.++.++|
T Consensus       170 Gf~~~~~~~~~~~~~~~~~~k  190 (215)
T 2zfu_A          170 GFKIVSKDLTNSHFFLFDFQK  190 (215)
T ss_dssp             TEEEEEEECCSTTCEEEEEEE
T ss_pred             CCEEEEEecCCCeEEEEEEEe
Confidence            999998766666777777765

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.59  E-value=1.1e-07  Score=62.93  Aligned_cols=81  Identities=10%  Similarity=-0.022  Sum_probs=57.5

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|+++|.  .++|+++++.|+|||++++.+......+....      .... ... ......++.++|.+++++
T Consensus       107 V~~~~~~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~------~~~~-~~~-~~~~~~~~~~~~~~~l~~  176 (256)
T 1nkv_A          107 AACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATEE------IAQA-CGV-SSTSDFLTLPGLVGAFDD  176 (256)
T ss_dssp             EEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH------HHHT-TTC-SCGGGSCCHHHHHHHHHT
T ss_pred             EEECCChHhcCCH--HHHHHHHHHHcCCCeEEEEecCcccCCCChHH------HHHH-Hhc-ccccccCCHHHHHHHHHH
Confidence            3457789999874  89999999999999999999986654432211      0100 000 112355799999999999


Q ss_pred             CCCCceEEEEe
Q 043826           83 AGFSGMSCERA   93 (104)
Q Consensus        83 aGf~~~~~~~~   93 (104)
                      +||+.+++...
T Consensus       177 aGf~~~~~~~~  187 (256)
T 1nkv_A          177 LGYDVVEMVLA  187 (256)
T ss_dssp             TTBCCCEEEEC
T ss_pred             CCCeeEEEEeC
Confidence            99999887643

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.57  E-value=1.5e-07  Score=66.38  Aligned_cols=82  Identities=13%  Similarity=0.152  Sum_probs=58.0

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|+++|.  .++|+++++.|+|||++++.+...+... ...     ...+..... ...+..++.++|.+++++
T Consensus       170 V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~~~-----~~~~~~~~~-~~~~~~~~~~~~~~ll~~  240 (383)
T 4fsd_A          170 VISNCVCNLSTNK--LALFKEIHRVLRDGGELYFSDVYADRRL-SEA-----AQQDPILYG-ECLGGALYLEDFRRLVAE  240 (383)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEESSCC-CHH-----HHHCHHHHH-TTCTTCCBHHHHHHHHHH
T ss_pred             EEEccchhcCCCH--HHHHHHHHHHcCCCCEEEEEEecccccc-CHh-----HhhhHHHhh-cccccCCCHHHHHHHHHH
Confidence            3566789999875  7999999999999999999997765321 111     011111111 124556788999999999


Q ss_pred             CCCCceEEEEe
Q 043826           83 AGFSGMSCERA   93 (104)
Q Consensus        83 aGf~~~~~~~~   93 (104)
                      +||+.+++...
T Consensus       241 aGF~~v~~~~~  251 (383)
T 4fsd_A          241 AGFRDVRLVSV  251 (383)
T ss_dssp             TTCCCEEEEEE
T ss_pred             CCCceEEEEec
Confidence            99998876653

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.57  E-value=8.1e-08  Score=64.30  Aligned_cols=87  Identities=15%  Similarity=0.177  Sum_probs=58.1

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC---CCCCcccchhhhhhhhhhhcCCCceecCHHHHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEV---PNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTL   79 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~---~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~l   79 (104)
                      .+..+++|+++|.  ..+|+++++.|+|||++++.+......   +..+..... .......... .++..++..++.++
T Consensus       109 v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~l~~~  184 (276)
T 3mgg_A          109 IFVCFVLEHLQSP--EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEA-WNCLIRVQAY-MKGNSLVGRQIYPL  184 (276)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHH-HHHHHHHHHH-TTCCTTGGGGHHHH
T ss_pred             EEEechhhhcCCH--HHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHH-HHHHHHHHHh-cCCCcchHHHHHHH
Confidence            4567899999987  489999999999999999998643221   111111000 0000111111 25566788899999


Q ss_pred             HHhCCCCceEEEEe
Q 043826           80 ATGAGFSGMSCERA   93 (104)
Q Consensus        80 l~~aGf~~~~~~~~   93 (104)
                      +++|||+++++...
T Consensus       185 l~~aGf~~v~~~~~  198 (276)
T 3mgg_A          185 LQESGFEKIRVEPR  198 (276)
T ss_dssp             HHHTTCEEEEEEEE
T ss_pred             HHHCCCCeEEEeeE
Confidence            99999999988764

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.56  E-value=8.1e-08  Score=62.06  Aligned_cols=88  Identities=16%  Similarity=0.067  Sum_probs=55.1

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccch-h-hhhhhhhhhcCCCceecCHHHHHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKS-N-FHFDVLMMIQRPDGKERTRHEFMTLA   80 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~-~-~~~~l~m~~~~~~g~~rt~~e~~~ll   80 (104)
                      .+...++| ++|.  ..+|+++++.|+|||++++.+............... . ......--........+|.++|.+++
T Consensus       120 v~~~~~l~-~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (227)
T 3e8s_A          120 ICANFALL-HQDI--IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNAL  196 (227)
T ss_dssp             EEEESCCC-SSCC--HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHH
T ss_pred             EEECchhh-hhhH--HHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHH
Confidence            35567888 6554  699999999999999999988754333221110000 0 00000000000012457999999999


Q ss_pred             HhCCCCceEEEEe
Q 043826           81 TGAGFSGMSCERA   93 (104)
Q Consensus        81 ~~aGf~~~~~~~~   93 (104)
                      +++||+++++...
T Consensus       197 ~~aGf~~~~~~~~  209 (227)
T 3e8s_A          197 DMAGLRLVSLQEP  209 (227)
T ss_dssp             HHTTEEEEEEECC
T ss_pred             HHcCCeEEEEecC
Confidence            9999999998763

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.56  E-value=3e-07  Score=60.06  Aligned_cols=87  Identities=16%  Similarity=0.105  Sum_probs=56.8

Q ss_pred             EEeccccccCChHHHHHHHHHHH-hhCCCCCEEEEEeeecCCCCCC-----CcccchhhhhhhhhhhcCCCceecCHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCY-KSIPEDGKVIVVELMLPEVPNT-----SIESKSNFHFDVLMMIQRPDGKERTRHEF   76 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~-~aL~pgg~l~i~d~~~~~~~~~-----~~~~~~~~~~~l~m~~~~~~g~~rt~~e~   76 (104)
                      .++.++||+++|.  .++|++++ +.|+|||++++.+...+.....     ..........+.. . ...+...+|.+++
T Consensus       107 v~~~~~l~~~~~~--~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~  182 (250)
T 2p7i_A          107 IVLTHVLEHIDDP--VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAE-F-AHGHRCTYALDTL  182 (250)
T ss_dssp             EEEESCGGGCSSH--HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHH-H-HTTCCCCCCHHHH
T ss_pred             EEEhhHHHhhcCH--HHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhccccc-c-cccccccCCHHHH
Confidence            4577899999886  79999999 9999999999987533211000     0000000000000 0 1124567899999


Q ss_pred             HHHHHhCCCCceEEEEe
Q 043826           77 MTLATGAGFSGMSCERA   93 (104)
Q Consensus        77 ~~ll~~aGf~~~~~~~~   93 (104)
                      .++++++||+++++...
T Consensus       183 ~~~l~~~Gf~~~~~~~~  199 (250)
T 2p7i_A          183 ERDASRAGLQVTYRSGI  199 (250)
T ss_dssp             HHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHCCCeEEEEeee
Confidence            99999999999988654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.54  E-value=1.8e-07  Score=61.28  Aligned_cols=97  Identities=13%  Similarity=0.187  Sum_probs=57.4

Q ss_pred             cccccC-ChHHHHHHHHHHHhhCCCCCEEEEEeeecCC--------C-----CCCCcc--c------chhhhhhhhhhhc
Q 043826            7 TILHDW-NDEHCLKLLKNCYKSIPEDGKVIVVELMLPE--------V-----PNTSIE--S------KSNFHFDVLMMIQ   64 (104)
Q Consensus         7 ~vlH~~-~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~--------~-----~~~~~~--~------~~~~~~~l~m~~~   64 (104)
                      .++|++ ++++..++|+++++.|+|||++++. ...+.        .     ......  .      ......++.++..
T Consensus       105 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (243)
T 3d2l_A          105 DSLNYLQTEADVKQTFDSAARLLTDGGKLLFD-VHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIE  183 (243)
T ss_dssp             TGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE-EECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEE
T ss_pred             CchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE-cCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEE
Confidence            388888 4567899999999999999999862 21110        0     000000  0      0000011111111


Q ss_pred             CCCc-----------eecCHHHHHHHHHhCCCCceEEEEeC--------CCeEEEEEEC
Q 043826           65 RPDG-----------KERTRHEFMTLATGAGFSGMSCERAI--------GNLWVMEFYK  104 (104)
Q Consensus        65 ~~~g-----------~~rt~~e~~~ll~~aGf~~~~~~~~~--------~~~~vie~~~  104 (104)
                      ..+|           +.+|.+++.+++++|||+++++....        +...++.++|
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K  242 (243)
T 3d2l_A          184 GEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEK  242 (243)
T ss_dssp             CTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEE
T ss_pred             cCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEe
Confidence            1111           45799999999999999999987641        3455677765

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.54  E-value=4.4e-07  Score=58.95  Aligned_cols=83  Identities=17%  Similarity=0.159  Sum_probs=56.3

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+..+++|+++|.  .++|+++++.|+|||++++.+...+    .+ ......... ...........++.+++.+++++
T Consensus       106 v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~----~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~  177 (219)
T 1vlm_A          106 ALMVTTICFVDDP--ERALKEAYRILKKGGYLIVGIVDRE----SF-LGREYEKNK-EKSVFYKNARFFSTEELMDLMRK  177 (219)
T ss_dssp             EEEESCGGGSSCH--HHHHHHHHHHEEEEEEEEEEEECSS----SH-HHHHHHHTT-TC-CCSTTCCCCCHHHHHHHHHH
T ss_pred             EEEcchHhhccCH--HHHHHHHHHHcCCCcEEEEEEeCCc----cH-HHHHHHHHh-cCcchhcccccCCHHHHHHHHHH
Confidence            3567799999775  6899999999999999999876332    11 110000000 00001123456899999999999


Q ss_pred             CCCCceEEEEe
Q 043826           83 AGFSGMSCERA   93 (104)
Q Consensus        83 aGf~~~~~~~~   93 (104)
                      +||+++++...
T Consensus       178 ~Gf~~~~~~~~  188 (219)
T 1vlm_A          178 AGFEEFKVVQT  188 (219)
T ss_dssp             TTCEEEEEEEE
T ss_pred             CCCeEEEEecc
Confidence            99999988775

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.50  E-value=3.6e-07  Score=57.43  Aligned_cols=60  Identities=13%  Similarity=0.126  Sum_probs=45.5

Q ss_pred             EeccccccC-ChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            4 CTLTILHDW-NDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         4 ~~~~vlH~~-~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      +...++|++ +|.  .++|+++++.|+|||++++.+...+... .                   ....++.++|.+++++
T Consensus        68 ~~~~~l~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~l~~  125 (176)
T 2ld4_A           68 LSGLVPGSTTLHS--AEILAEIARILRPGGCLFLKEPVETAVD-N-------------------NSKVKTASKLCSALTL  125 (176)
T ss_dssp             EECCSTTCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESSSC-S-------------------SSSSCCHHHHHHHHHH
T ss_pred             EECChhhhcccCH--HHHHHHHHHHCCCCEEEEEEcccccccc-c-------------------ccccCCHHHHHHHHHH
Confidence            455789998 665  7899999999999999999765432110 0                   1223688999999999


Q ss_pred             CCC
Q 043826           83 AGF   85 (104)
Q Consensus        83 aGf   85 (104)
                      +||
T Consensus       126 aGf  128 (176)
T 2ld4_A          126 SGL  128 (176)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            999

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.49  E-value=1.2e-06  Score=57.23  Aligned_cols=89  Identities=11%  Similarity=0.070  Sum_probs=54.8

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC--CCCCCCcc----c----chhhhh-----hhhhhhcCCC
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP--EVPNTSIE----S----KSNFHF-----DVLMMIQRPD   67 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~--~~~~~~~~----~----~~~~~~-----~l~m~~~~~~   67 (104)
                      .+...++|++++.  .++|+++++.|+|||++++......  ........    .    .....+     ..........
T Consensus       111 v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (243)
T 3bkw_A          111 AYSSLALHYVEDV--ARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVV  188 (243)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCC
T ss_pred             EEEeccccccchH--HHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceE
Confidence            4567799999864  7999999999999999999874311  00000000    0    000000     0000000113


Q ss_pred             ceecCHHHHHHHHHhCCCCceEEEEe
Q 043826           68 GKERTRHEFMTLATGAGFSGMSCERA   93 (104)
Q Consensus        68 g~~rt~~e~~~ll~~aGf~~~~~~~~   93 (104)
                      ...+|.++|.+++++|||+++++...
T Consensus       189 ~~~~t~~~~~~~l~~aGF~~~~~~~~  214 (243)
T 3bkw_A          189 KHHRTVGTTLNALIRSGFAIEHVEEF  214 (243)
T ss_dssp             EEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             EEeccHHHHHHHHHHcCCEeeeeccC
Confidence            34479999999999999999988764

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.49  E-value=4.5e-07  Score=62.00  Aligned_cols=81  Identities=6%  Similarity=0.006  Sum_probs=57.8

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|+++   ..++|+++++.|+|||++++.+...++......  ......+-  ..   ....++.++|.+++++
T Consensus       189 V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~--~~~~~~~~--~~---~~~~~s~~~~~~~l~~  258 (312)
T 3vc1_A          189 SWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS--KWVSQINA--HF---ECNIHSRREYLRAMAD  258 (312)
T ss_dssp             EEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC--HHHHHHHH--HH---TCCCCBHHHHHHHHHT
T ss_pred             EEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh--HHHHHHHh--hh---cCCCCCHHHHHHHHHH
Confidence            35577899994   689999999999999999999987655432211  01111111  11   1236789999999999


Q ss_pred             CCCCceEEEEe
Q 043826           83 AGFSGMSCERA   93 (104)
Q Consensus        83 aGf~~~~~~~~   93 (104)
                      +||+++++...
T Consensus       259 aGf~~~~~~~~  269 (312)
T 3vc1_A          259 NRLVPHTIVDL  269 (312)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCCEEEEEEeC
Confidence            99999988765

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.47  E-value=1.7e-07  Score=61.25  Aligned_cols=100  Identities=7%  Similarity=-0.034  Sum_probs=59.4

Q ss_pred             Eecc-ccccCCh-HHHHHHHHHHHhhCCCCCEEEEEeeecCCC-----CCCCc----------ccc----hhhhhhhhhh
Q 043826            4 CTLT-ILHDWND-EHCLKLLKNCYKSIPEDGKVIVVELMLPEV-----PNTSI----------ESK----SNFHFDVLMM   62 (104)
Q Consensus         4 ~~~~-vlH~~~d-~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~-----~~~~~----------~~~----~~~~~~l~m~   62 (104)
                      +... ++|++++ ++..++|+++++.|+|||++++.- ..+..     +....          ...    .....++.++
T Consensus       106 ~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (246)
T 1y8c_A          106 TCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI-NSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFF  184 (246)
T ss_dssp             EECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE-ECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEe-cCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEE
Confidence            4455 9999954 678999999999999999998732 21110     00000          000    0000011111


Q ss_pred             hcCC----------CceecCHHHHHHHHHhCCCCceEEEEe--------CCCeEEEEEEC
Q 043826           63 IQRP----------DGKERTRHEFMTLATGAGFSGMSCERA--------IGNLWVMEFYK  104 (104)
Q Consensus        63 ~~~~----------~g~~rt~~e~~~ll~~aGf~~~~~~~~--------~~~~~vie~~~  104 (104)
                      ....          ..+.+|.++|.++|++|||+++++...        .+...++.++|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK  244 (246)
T 1y8c_A          185 VRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL  244 (246)
T ss_dssp             EECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred             EecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence            1000          124569999999999999999998764        13455666665

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.47  E-value=2.9e-07  Score=62.41  Aligned_cols=80  Identities=11%  Similarity=0.011  Sum_probs=52.8

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      -+..++||+++|.  .+.|+++++.|+|||++++.+... +   .. .......+. ..+........++.++|.++|++
T Consensus       139 V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~-~---~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~  210 (292)
T 2aot_A          139 IHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSG-S---SG-WDKLWKKYG-SRFPQDDLCQYITSDDLTQMLDN  210 (292)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECT-T---SH-HHHHHHHHG-GGSCCCTTCCCCCHHHHHHHHHH
T ss_pred             EEEeeeeeecCCH--HHHHHHHHHHcCCCcEEEEEEecC-C---cc-HHHHHHHHH-HhccCCCcccCCCHHHHHHHHHH
Confidence            4567899999986  689999999999999999996432 1   11 110000000 00000012345789999999999


Q ss_pred             CCCCceEE
Q 043826           83 AGFSGMSC   90 (104)
Q Consensus        83 aGf~~~~~   90 (104)
                      +||+.++.
T Consensus       211 aGf~~~~~  218 (292)
T 2aot_A          211 LGLKYECY  218 (292)
T ss_dssp             HTCCEEEE
T ss_pred             CCCceEEE
Confidence            99998764

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.42  E-value=3.5e-07  Score=62.44  Aligned_cols=79  Identities=13%  Similarity=0.059  Sum_probs=54.9

Q ss_pred             EEeccccccCChHH-HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            3 NCTLTILHDWNDEH-CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         3 y~~~~vlH~~~d~~-~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      .++..+||+.+|++ ...+|++++++|+|||.|++.+...+..+  ....   ...+..-..-. ....||.+|+.++| 
T Consensus       164 v~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p--~~~~---~~~~~~~~~g~-p~~~rs~~ei~~~f-  236 (277)
T 3giw_A          164 LTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP--QEVG---RVAREYAARNM-PMRLRTHAEAEEFF-  236 (277)
T ss_dssp             EEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH--HHHH---HHHHHHHHTTC-CCCCCCHHHHHHTT-
T ss_pred             HHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH--HHHH---HHHHHHHhcCC-CCccCCHHHHHHHh-
Confidence            45678999999987 68999999999999999999997654221  1111   11121111111 34569999999999 


Q ss_pred             hCCCCceE
Q 043826           82 GAGFSGMS   89 (104)
Q Consensus        82 ~aGf~~~~   89 (104)
                       .||+.++
T Consensus       237 -~Glelve  243 (277)
T 3giw_A          237 -EGLELVE  243 (277)
T ss_dssp             -TTSEECT
T ss_pred             -CCCcccC
Confidence             4999654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.37  E-value=9.9e-07  Score=55.94  Aligned_cols=72  Identities=11%  Similarity=0.028  Sum_probs=54.1

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|++++++..++++++++.|+|||++++.+...++....+        .        .....++.+++.+++++
T Consensus       101 v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~--------~--------~~~~~~~~~~l~~~~~~  164 (199)
T 2xvm_A          101 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT--------V--------GFPFAFKEGELRRYYEG  164 (199)
T ss_dssp             EEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC--------S--------CCSCCBCTTHHHHHTTT
T ss_pred             EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC--------C--------CCCCccCHHHHHHHhcC
Confidence            3566799999988889999999999999999999987764432111        0        12334678899999975


Q ss_pred             CCCCceEEEE
Q 043826           83 AGFSGMSCER   92 (104)
Q Consensus        83 aGf~~~~~~~   92 (104)
                        |++++...
T Consensus       165 --f~~~~~~~  172 (199)
T 2xvm_A          165 --WERVKYNE  172 (199)
T ss_dssp             --SEEEEEEC
T ss_pred             --CeEEEecc
Confidence              99887654

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.37  E-value=4.1e-07  Score=60.13  Aligned_cols=90  Identities=13%  Similarity=0.073  Sum_probs=53.7

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC-----------CCCCCCcccchhhhhh-----hhhhhcCC
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP-----------EVPNTSIESKSNFHFD-----VLMMIQRP   66 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~-----------~~~~~~~~~~~~~~~~-----l~m~~~~~   66 (104)
                      .+...++|+++|.  .++|+++++.|+|||++++......           +.............++     ........
T Consensus       112 v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (253)
T 3g5l_A          112 VLSSLALHYIASF--DDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDV  189 (253)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEE
T ss_pred             EEEchhhhhhhhH--HHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccC
Confidence            4566799999764  7999999999999999998753210           0000000000000000     00000000


Q ss_pred             CceecCHHHHHHHHHhCCCCceEEEEeC
Q 043826           67 DGKERTRHEFMTLATGAGFSGMSCERAI   94 (104)
Q Consensus        67 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~   94 (104)
                      ....||.++|.++|++|||+++++....
T Consensus       190 ~~~~~t~~~~~~~l~~aGF~~~~~~e~~  217 (253)
T 3g5l_A          190 QKYHRTVTTYIQTLLKNGFQINSVIEPE  217 (253)
T ss_dssp             EEECCCHHHHHHHHHHTTEEEEEEECCC
T ss_pred             ccEecCHHHHHHHHHHcCCeeeeeecCC
Confidence            1223599999999999999999988543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.37  E-value=6.3e-07  Score=60.33  Aligned_cols=90  Identities=9%  Similarity=-0.015  Sum_probs=57.2

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcc-cchhhhhhh---hhhhcCCCceecCHHHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIE-SKSNFHFDV---LMMIQRPDGKERTRHEFMT   78 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~-~~~~~~~~l---~m~~~~~~g~~rt~~e~~~   78 (104)
                      .+...++|+++|.  .++|+++++.|+|||++++.+...+........ .........   ...........++.+++.+
T Consensus       140 v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  217 (285)
T 4htf_A          140 ILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYL  217 (285)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHH
T ss_pred             EEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHH
Confidence            4567899999876  789999999999999999988643221000000 000000000   0000011235678999999


Q ss_pred             HHHhCCCCceEEEEeC
Q 043826           79 LATGAGFSGMSCERAI   94 (104)
Q Consensus        79 ll~~aGf~~~~~~~~~   94 (104)
                      +++++||+++++..+.
T Consensus       218 ~l~~aGf~v~~~~~~~  233 (285)
T 4htf_A          218 WLEEAGWQIMGKTGVR  233 (285)
T ss_dssp             HHHHTTCEEEEEEEES
T ss_pred             HHHHCCCceeeeeeEE
Confidence            9999999999888764

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.36  E-value=1.9e-07  Score=60.39  Aligned_cols=86  Identities=13%  Similarity=0.116  Sum_probs=56.1

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccch-hhhhhh---hhhhcCCCceecCHHHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKS-NFHFDV---LMMIQRPDGKERTRHEFMT   78 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~-~~~~~l---~m~~~~~~g~~rt~~e~~~   78 (104)
                      .++..++|+++|.  .++|+++++.|+|||++++........   ...... ...+..   .... ..+...+|.+++.+
T Consensus        97 v~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  170 (230)
T 3cc8_A           97 VIFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHI---SVLAPLLAGNWTYTEYGLLD-KTHIRFFTFNEMLR  170 (230)
T ss_dssp             EEEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSH---HHHHHHHTTCCCCBSSSTTB-TTCCCCCCHHHHHH
T ss_pred             EEECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchH---HHHHHHhcCCceeccCCCCC-cceEEEecHHHHHH
Confidence            3567899999886  699999999999999999987543211   000000 000000   0000 01235579999999


Q ss_pred             HHHhCCCCceEEEEeC
Q 043826           79 LATGAGFSGMSCERAI   94 (104)
Q Consensus        79 ll~~aGf~~~~~~~~~   94 (104)
                      +++++||+++++....
T Consensus       171 ~l~~~Gf~~~~~~~~~  186 (230)
T 3cc8_A          171 MFLKAGYSISKVDRVY  186 (230)
T ss_dssp             HHHHTTEEEEEEEEEE
T ss_pred             HHHHcCCeEEEEEecc
Confidence            9999999999887753

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.36  E-value=7.5e-07  Score=58.83  Aligned_cols=80  Identities=10%  Similarity=-0.052  Sum_probs=55.7

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|+++   ..++|+++++.|+|||++++.+...........      ..+...-.   ....++.+++.+++++
T Consensus       118 v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~~~~~l~~  185 (257)
T 3f4k_A          118 IWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPAE------IEDFWMDA---YPEISVIPTCIDKMER  185 (257)
T ss_dssp             EEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHH------HHHHHHHH---CTTCCBHHHHHHHHHH
T ss_pred             EEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHH------HHHHHHHh---CCCCCCHHHHHHHHHH
Confidence            35567888883   368999999999999999999976433321111      11111111   1225789999999999


Q ss_pred             CCCCceEEEEeC
Q 043826           83 AGFSGMSCERAI   94 (104)
Q Consensus        83 aGf~~~~~~~~~   94 (104)
                      +||+++++...+
T Consensus       186 aGf~~v~~~~~~  197 (257)
T 3f4k_A          186 AGYTPTAHFILP  197 (257)
T ss_dssp             TTEEEEEEEECC
T ss_pred             CCCeEEEEEECC
Confidence            999999987664

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.35  E-value=1.1e-06  Score=57.87  Aligned_cols=90  Identities=13%  Similarity=0.013  Sum_probs=56.7

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccch--hhhhhhh-hhhcCCCceecCHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKS--NFHFDVL-MMIQRPDGKERTRHEFMT   78 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~--~~~~~l~-m~~~~~~g~~rt~~e~~~   78 (104)
                      +.+...++|+.++++..++|+++++.|+|||++++.|...++..........  .....+. .+.........+.+++.+
T Consensus       127 ~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (245)
T 3ggd_A          127 NIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIEL  206 (245)
T ss_dssp             EEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHH
T ss_pred             EEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHH
Confidence            4566789999998888999999999999999999999865431100000000  0000000 010000112368999999


Q ss_pred             HHHhCCCCceEEEEe
Q 043826           79 LATGAGFSGMSCERA   93 (104)
Q Consensus        79 ll~~aGf~~~~~~~~   93 (104)
                      ++  +||+++.....
T Consensus       207 ~~--aGf~~~~~~~~  219 (245)
T 3ggd_A          207 YF--PDFEILSQGEG  219 (245)
T ss_dssp             HC--TTEEEEEEECC
T ss_pred             Hh--CCCEEEecccc
Confidence            99  99999876543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.33  E-value=1.6e-06  Score=61.37  Aligned_cols=80  Identities=14%  Similarity=0.120  Sum_probs=57.7

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+..+++|+++|.  ..+|+++++.|+|||++++.....+...     .  ...++-  .. ..+...+|.+++.+++++
T Consensus       175 I~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~-----~--~~~~~~--~~-~~~~~~~s~~~l~~ll~~  242 (416)
T 4e2x_A          175 IYAANTLCHIPYV--QSVLEGVDALLAPDGVFVFEDPYLGDIV-----A--KTSFDQ--IF-DEHFFLFSATSVQGMAQR  242 (416)
T ss_dssp             EEEESCGGGCTTH--HHHHHHHHHHEEEEEEEEEEEECHHHHH-----H--HTCGGG--CS-TTCCEECCHHHHHHHHHH
T ss_pred             EEECChHHhcCCH--HHHHHHHHHHcCCCeEEEEEeCChHHhh-----h--hcchhh--hh-hhhhhcCCHHHHHHHHHH
Confidence            4667899999864  8999999999999999998654321100     0  001111  10 135667899999999999


Q ss_pred             CCCCceEEEEeC
Q 043826           83 AGFSGMSCERAI   94 (104)
Q Consensus        83 aGf~~~~~~~~~   94 (104)
                      +||+++++...+
T Consensus       243 aGf~~~~~~~~~  254 (416)
T 4e2x_A          243 CGFELVDVQRLP  254 (416)
T ss_dssp             TTEEEEEEEEEC
T ss_pred             cCCEEEEEEEcc
Confidence            999999988865

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.33  E-value=2.4e-06  Score=56.98  Aligned_cols=88  Identities=8%  Similarity=-0.070  Sum_probs=55.7

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchh-hhhh--hhhhh---cCCCceecCHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSN-FHFD--VLMMI---QRPDGKERTRHEF   76 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~-~~~~--l~m~~---~~~~g~~rt~~e~   76 (104)
                      .+...++|++++.+  .+++.+...++|||++++.+...+...... ..... ....  .....   .......+|.+++
T Consensus       126 v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  202 (275)
T 3bkx_A          126 VVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYAIAPSDVANIRTLITPDTL  202 (275)
T ss_dssp             EEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHHHSCCTTCSCCCCCCHHHH
T ss_pred             EEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhhccccccccccccCCHHHH
Confidence            35678999999875  477777777778999999998775442111 00000 0000  00000   0001245799999


Q ss_pred             HHHHHhCCCCceEEEEe
Q 043826           77 MTLATGAGFSGMSCERA   93 (104)
Q Consensus        77 ~~ll~~aGf~~~~~~~~   93 (104)
                      .++++++||+++++...
T Consensus       203 ~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          203 AQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             HHHHHHHTCEEEECCCB
T ss_pred             HHHHHHCCCeeEEEEEe
Confidence            99999999999887665

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.32  E-value=1.1e-06  Score=58.21  Aligned_cols=78  Identities=10%  Similarity=-0.047  Sum_probs=53.4

Q ss_pred             EEeccccccCCh--HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHH
Q 043826            3 NCTLTILHDWND--EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLA   80 (104)
Q Consensus         3 y~~~~vlH~~~d--~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll   80 (104)
                      .+...++|+.++  ++..++|+++++.|+|||++++.+...+.     ...    .-+..    . .....+.+++.+++
T Consensus       161 v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-----~~~----~~~~~----~-~~~~~~~~~~~~~l  226 (265)
T 2i62_A          161 LLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS-----YYM----IGEQK----F-SSLPLGWETVRDAV  226 (265)
T ss_dssp             EEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-----EEE----ETTEE----E-ECCCCCHHHHHHHH
T ss_pred             EEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc-----eEE----cCCcc----c-cccccCHHHHHHHH
Confidence            345678884443  35789999999999999999999853321     100    00000    0 12235788999999


Q ss_pred             HhCCCCceEEEEeC
Q 043826           81 TGAGFSGMSCERAI   94 (104)
Q Consensus        81 ~~aGf~~~~~~~~~   94 (104)
                      +++||+++++....
T Consensus       227 ~~aGf~~~~~~~~~  240 (265)
T 2i62_A          227 EEAGYTIEQFEVIS  240 (265)
T ss_dssp             HHTTCEEEEEEEEC
T ss_pred             HHCCCEEEEEEEec
Confidence            99999999888654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.32  E-value=1e-06  Score=58.98  Aligned_cols=76  Identities=12%  Similarity=-0.060  Sum_probs=52.2

Q ss_pred             EeccccccC-C-hHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            4 CTLTILHDW-N-DEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         4 ~~~~vlH~~-~-d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +...+||+. + .++-.++|+++++.|+|||++++.+...+.     ....  ....      . .....+.+++.++|+
T Consensus       161 ~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~-----~~~~--g~~~------~-~~~~~~~~~l~~~l~  226 (263)
T 2a14_A          161 LTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP-----SYMV--GKRE------F-SCVALEKGEVEQAVL  226 (263)
T ss_dssp             EEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-----EEEE--TTEE------E-ECCCCCHHHHHHHHH
T ss_pred             eehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCc-----ccee--CCeE------e-eccccCHHHHHHHHH
Confidence            456688874 2 255688999999999999999998754221     0000  0000      0 112358999999999


Q ss_pred             hCCCCceEEEEe
Q 043826           82 GAGFSGMSCERA   93 (104)
Q Consensus        82 ~aGf~~~~~~~~   93 (104)
                      ++||+++++...
T Consensus       227 ~aGF~i~~~~~~  238 (263)
T 2a14_A          227 DAGFDIEQLLHS  238 (263)
T ss_dssp             HTTEEEEEEEEE
T ss_pred             HCCCEEEEEeec
Confidence            999999988764

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.30  E-value=1.1e-06  Score=58.53  Aligned_cols=80  Identities=13%  Similarity=-0.050  Sum_probs=56.4

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|++ |  ..++|+++++.|+|||++++.+...........      ..+...- .  ....++.+++.+++++
T Consensus       118 i~~~~~~~~~-~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~-~--~~~~~~~~~~~~~l~~  185 (267)
T 3kkz_A          118 IWSEGAIYNI-G--FERGLNEWRKYLKKGGYLAVSECSWFTDERPAE------INDFWMD-A--YPEIDTIPNQVAKIHK  185 (267)
T ss_dssp             EEESSCGGGT-C--HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHH------HHHHHHH-H--CTTCEEHHHHHHHHHH
T ss_pred             EEEcCCceec-C--HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHH------HHHHHHH-h--CCCCCCHHHHHHHHHH
Confidence            3566788888 3  368999999999999999999986543322211      1111101 0  1234689999999999


Q ss_pred             CCCCceEEEEeC
Q 043826           83 AGFSGMSCERAI   94 (104)
Q Consensus        83 aGf~~~~~~~~~   94 (104)
                      +||+++++...+
T Consensus       186 aGf~~v~~~~~~  197 (267)
T 3kkz_A          186 AGYLPVATFILP  197 (267)
T ss_dssp             TTEEEEEEEECC
T ss_pred             CCCEEEEEEECC
Confidence            999999988765

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.28  E-value=2.8e-06  Score=53.44  Aligned_cols=60  Identities=12%  Similarity=0.125  Sum_probs=49.8

Q ss_pred             cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCC
Q 043826            7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFS   86 (104)
Q Consensus         7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~   86 (104)
                      .++|++++++..++|+++.+.|+|||++++.....                           ..++.+++.++++++||+
T Consensus       116 ~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~---------------------------~~~~~~~~~~~l~~~Gf~  168 (195)
T 3cgg_A          116 NVMGFLAEDGREPALANIHRALGADGRAVIGFGAG---------------------------RGWVFGDFLEVAERVGLE  168 (195)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT---------------------------SSCCHHHHHHHHHHHTEE
T ss_pred             cHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC---------------------------CCcCHHHHHHHHHHcCCE
Confidence            68999988889999999999999999998864210                           115788999999999999


Q ss_pred             ceEEEEe
Q 043826           87 GMSCERA   93 (104)
Q Consensus        87 ~~~~~~~   93 (104)
                      ++++...
T Consensus       169 ~~~~~~~  175 (195)
T 3cgg_A          169 LENAFES  175 (195)
T ss_dssp             EEEEESS
T ss_pred             Eeeeecc
Confidence            9887654

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.28  E-value=6.3e-07  Score=57.43  Aligned_cols=88  Identities=7%  Similarity=-0.097  Sum_probs=56.6

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhC
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGA   83 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~a   83 (104)
                      +...++|+++.++..++++++++.|+|||++++.+...++.+...........+....-.....+..++.+|+.++++++
T Consensus        94 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  173 (209)
T 2p8j_A           94 YSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDM  173 (209)
T ss_dssp             EECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTS
T ss_pred             EEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhc
Confidence            44578999988889999999999999999999999876543311100000000100000000013567999999999999


Q ss_pred             CCCceEEE
Q 043826           84 GFSGMSCE   91 (104)
Q Consensus        84 Gf~~~~~~   91 (104)
                      ||...+..
T Consensus       174 g~~~~~~~  181 (209)
T 2p8j_A          174 KVLFKEDR  181 (209)
T ss_dssp             EEEEEEEE
T ss_pred             Cceeeeee
Confidence            99766543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.28  E-value=7.5e-07  Score=60.14  Aligned_cols=86  Identities=13%  Similarity=0.125  Sum_probs=54.5

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee-----cC---CCCCCCcc---cchhhhhhhhhhhcCCCceec
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELM-----LP---EVPNTSIE---SKSNFHFDVLMMIQRPDGKER   71 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~-----~~---~~~~~~~~---~~~~~~~~l~m~~~~~~g~~r   71 (104)
                      .+...++|+++|.  .++|+++++.|+|||++++.+..     ..   ++...+..   ......+.-. .... +....
T Consensus        93 v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~  168 (284)
T 3gu3_A           93 AICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESD-TQRN-GKDGN  168 (284)
T ss_dssp             EEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHH-HHHT-CCCTT
T ss_pred             EEECChhhcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHH-hhhh-ccccc
Confidence            3567789999887  69999999999999999999865     10   11111100   0001111111 1111 33445


Q ss_pred             CHHHHHHHHHhCCCCceEEEE
Q 043826           72 TRHEFMTLATGAGFSGMSCER   92 (104)
Q Consensus        72 t~~e~~~ll~~aGf~~~~~~~   92 (104)
                      +..++.+++++|||+.+++..
T Consensus       169 ~~~~l~~~l~~aGF~~v~~~~  189 (284)
T 3gu3_A          169 IGMKIPIYLSELGVKNIECRV  189 (284)
T ss_dssp             GGGTHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCeEEEEE
Confidence            677899999999999997744

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.23  E-value=3.5e-06  Score=56.15  Aligned_cols=82  Identities=9%  Similarity=0.035  Sum_probs=54.5

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      -+..+++|+++|.  .++|+++++.|+ ||++++.+...+..... ...   ..+.. ... ..+...++.+++. ++++
T Consensus        98 v~~~~~l~~~~~~--~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~-~~~---~~~~~-~~~-~~~~~~~~~~~~~-~l~~  167 (261)
T 3ege_A           98 VISILAIHHFSHL--EKSFQEMQRIIR-DGTIVLLTFDIRLAQRI-WLY---DYFPF-LWE-DALRFLPLDEQIN-LLQE  167 (261)
T ss_dssp             EEEESCGGGCSSH--HHHHHHHHHHBC-SSCEEEEEECGGGCCCC-GGG---GTCHH-HHH-HHHTSCCHHHHHH-HHHH
T ss_pred             EEEcchHhhccCH--HHHHHHHHHHhC-CcEEEEEEcCCchhHHH-HHH---HHHHH-Hhh-hhhhhCCCHHHHH-HHHH
Confidence            3567789999775  799999999999 99999999754322211 100   01110 011 0123346778889 9999


Q ss_pred             CCCCceEEEEeC
Q 043826           83 AGFSGMSCERAI   94 (104)
Q Consensus        83 aGf~~~~~~~~~   94 (104)
                      |||+.+++....
T Consensus       168 aGF~~v~~~~~~  179 (261)
T 3ege_A          168 NTKRRVEAIPFL  179 (261)
T ss_dssp             HHCSEEEEEECC
T ss_pred             cCCCceeEEEec
Confidence            999999887753

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.20  E-value=6.6e-06  Score=53.14  Aligned_cols=79  Identities=14%  Similarity=0.105  Sum_probs=50.1

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHH----H
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFM----T   78 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~----~   78 (104)
                      .+...++|++++++..++|+++++.|+|||.+++..... .+..-+.      ..... .........++.+++.    +
T Consensus       106 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~-~~~~~~~------~~~~~-~~~~~~~~~~~~~~l~~~~~~  177 (219)
T 3jwg_A          106 ATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKE-YNFHYGN------LFEGN-LRHRDHRFEWTRKEFQTWAVK  177 (219)
T ss_dssp             EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGG-GGGCCCC------T------GGGCCTTSBCHHHHHHHHHH
T ss_pred             EEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchh-hhhhhcc------cCccc-ccccCceeeecHHHHHHHHHH
Confidence            456789999999988999999999999999666554321 1110000      00000 0001234456899999    7


Q ss_pred             HHHhCCCCceE
Q 043826           79 LATGAGFSGMS   89 (104)
Q Consensus        79 ll~~aGf~~~~   89 (104)
                      +++++||++..
T Consensus       178 l~~~~Gf~v~~  188 (219)
T 3jwg_A          178 VAEKYGYSVRF  188 (219)
T ss_dssp             HHHHHTEEEEE
T ss_pred             HHHHCCcEEEE
Confidence            78899996654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.19  E-value=9.8e-07  Score=59.61  Aligned_cols=77  Identities=8%  Similarity=0.019  Sum_probs=53.2

Q ss_pred             EeccccccCChH--HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            4 CTLTILHDWNDE--HCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         4 ~~~~vlH~~~d~--~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +...+||+.+++  +..++|+++++.|+|||++++.+.... .    ...    .-+..    . ....++.++|.++|+
T Consensus       179 ~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~-~----~~~----~~~~~----~-~~~~~~~~~l~~~l~  244 (289)
T 2g72_A          179 VSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE-S----WYL----AGEAR----L-TVVPVSEEEVREALV  244 (289)
T ss_dssp             EEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESC-C----EEE----ETTEE----E-ECCCCCHHHHHHHHH
T ss_pred             EehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCc-c----eEE----cCCee----e-eeccCCHHHHHHHHH
Confidence            456788885543  678999999999999999999874431 1    000    00000    0 122468999999999


Q ss_pred             hCCCCceEEEEeC
Q 043826           82 GAGFSGMSCERAI   94 (104)
Q Consensus        82 ~aGf~~~~~~~~~   94 (104)
                      ++||+++++....
T Consensus       245 ~aGf~~~~~~~~~  257 (289)
T 2g72_A          245 RSGYKVRDLRTYI  257 (289)
T ss_dssp             HTTEEEEEEEEEE
T ss_pred             HcCCeEEEeeEee
Confidence            9999998876643

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.16  E-value=2.8e-06  Score=57.05  Aligned_cols=90  Identities=12%  Similarity=0.039  Sum_probs=55.2

Q ss_pred             Eecccccc--CChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC---------C------------CCCcccchhhhhhhh
Q 043826            4 CTLTILHD--WNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEV---------P------------NTSIESKSNFHFDVL   60 (104)
Q Consensus         4 ~~~~vlH~--~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~---------~------------~~~~~~~~~~~~~l~   60 (104)
                      +...++|+  .+.++..++|+++++.|+|||++++.....+.-         .            ..+........+.+.
T Consensus       138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~  217 (298)
T 1ri5_A          138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL  217 (298)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred             EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence            45567888  667778999999999999999999887542100         0            000000000000000


Q ss_pred             hhhcCCCceecCHHHHHHHHHhCCCCceEEEEe
Q 043826           61 MMIQRPDGKERTRHEFMTLATGAGFSGMSCERA   93 (104)
Q Consensus        61 m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~   93 (104)
                      -.........++.+++.++++++||+++++...
T Consensus       218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~  250 (298)
T 1ri5_A          218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF  250 (298)
T ss_dssp             TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred             hhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence            000000134578999999999999999988764

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.15  E-value=2.2e-06  Score=56.60  Aligned_cols=85  Identities=11%  Similarity=-0.024  Sum_probs=52.0

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCC---CceecCHHHHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRP---DGKERTRHEFMTL   79 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~---~g~~rt~~e~~~l   79 (104)
                      .+...++|+++|.  .++|+++++.|+|||++++. ...+ + ..+..........+.-....+   ....++.+++.++
T Consensus       108 v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~-~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (263)
T 2yqz_A          108 VIVVHLWHLVPDW--PKVLAEAIRVLKPGGALLEG-WDQA-E-ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEA  182 (263)
T ss_dssp             EEEESCGGGCTTH--HHHHHHHHHHEEEEEEEEEE-EEEE-C-CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHH
T ss_pred             EEECCchhhcCCH--HHHHHHHHHHCCCCcEEEEE-ecCC-C-ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHH
Confidence            3566799999874  78999999999999999988 2221 1 111000000011110000011   2235688999999


Q ss_pred             HHhCCCCceEEEE
Q 043826           80 ATGAGFSGMSCER   92 (104)
Q Consensus        80 l~~aGf~~~~~~~   92 (104)
                      ++++||+.+.+..
T Consensus       183 l~~~Gf~~~~~~~  195 (263)
T 2yqz_A          183 LRRLGLKPRTREV  195 (263)
T ss_dssp             HHHTTCCCEEEEE
T ss_pred             HHHcCCCcceEEE
Confidence            9999999876543

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.15  E-value=6.6e-06  Score=53.08  Aligned_cols=70  Identities=4%  Similarity=-0.005  Sum_probs=49.7

Q ss_pred             eccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826            5 TLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG   84 (104)
Q Consensus         5 ~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG   84 (104)
                      .+.++|++++++..++++++++.|+|||+++++....+... .         .        ......+.+|+.+++++ |
T Consensus       107 ~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~-~---------~--------~~~~~~~~~el~~~~~~-g  167 (203)
T 1pjz_A          107 DRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL-L---------E--------GPPFSVPQTWLHRVMSG-N  167 (203)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS-S---------S--------SCCCCCCHHHHHHTSCS-S
T ss_pred             ECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc-c---------C--------CCCCCCCHHHHHHHhcC-C
Confidence            35689999988888999999999999999555543322110 0         0        01112578999999998 9


Q ss_pred             CCceEEEEe
Q 043826           85 FSGMSCERA   93 (104)
Q Consensus        85 f~~~~~~~~   93 (104)
                      |++..+...
T Consensus       168 f~i~~~~~~  176 (203)
T 1pjz_A          168 WEVTKVGGQ  176 (203)
T ss_dssp             EEEEEEEES
T ss_pred             cEEEEeccc
Confidence            998877664

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.15  E-value=1.9e-06  Score=57.81  Aligned_cols=84  Identities=7%  Similarity=-0.030  Sum_probs=54.2

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhh-hhhh-----cCCCceecCHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDV-LMMI-----QRPDGKERTRHEF   76 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l-~m~~-----~~~~g~~rt~~e~   76 (104)
                      .+...++|+++|.  .++|+++++.|+|||++++.....+.   .....  ...... ....     .......++.+++
T Consensus       121 v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (279)
T 3ccf_A          121 VFSNAMLHWVKEP--EAAIASIHQALKSGGRFVAEFGGKGN---IKYIL--EALYNALETLGIHNPQALNPWYFPSIGEY  193 (279)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECTTT---THHHH--HHHHHHHHHHTCCCGGGGCCCCCCCHHHH
T ss_pred             EEEcchhhhCcCH--HHHHHHHHHhcCCCcEEEEEecCCcc---hHHHH--HHHHHHHHhcCCccccCcCceeCCCHHHH
Confidence            4567899999876  68999999999999999987653221   11100  000000 0000     0001235689999


Q ss_pred             HHHHHhCCCCceEEEEe
Q 043826           77 MTLATGAGFSGMSCERA   93 (104)
Q Consensus        77 ~~ll~~aGf~~~~~~~~   93 (104)
                      .++++++||+.+++...
T Consensus       194 ~~~l~~aGf~~~~~~~~  210 (279)
T 3ccf_A          194 VNILEKQGFDVTYAALF  210 (279)
T ss_dssp             HHHHHHHTEEEEEEEEE
T ss_pred             HHHHHHcCCEEEEEEEe
Confidence            99999999999877654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.12  E-value=7.2e-06  Score=52.95  Aligned_cols=79  Identities=6%  Similarity=-0.010  Sum_probs=50.3

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHH----H
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFM----T   78 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~----~   78 (104)
                      .+...++|++++++..++|+++++.|+|||.+++.........-+       ...... .........++.+++.    +
T Consensus       106 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~l~~~~~~  177 (217)
T 3jwh_A          106 ATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFA-------NLPAGK-LRHKDHRFEWTRSQFQNWANK  177 (217)
T ss_dssp             EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-------------------CCSCBCHHHHHHHHHH
T ss_pred             EeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhc-------cccccc-ccccccccccCHHHHHHHHHH
Confidence            456789999999989999999999999999777665421000000       000000 0001234457899999    8


Q ss_pred             HHHhCCCCceE
Q 043826           79 LATGAGFSGMS   89 (104)
Q Consensus        79 ll~~aGf~~~~   89 (104)
                      +++++||++..
T Consensus       178 ~~~~~Gf~v~~  188 (217)
T 3jwh_A          178 ITERFAYNVQF  188 (217)
T ss_dssp             HHHHSSEEEEE
T ss_pred             HHHHcCceEEE
Confidence            88899997653

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=97.98  E-value=5.3e-06  Score=54.70  Aligned_cols=81  Identities=7%  Similarity=-0.091  Sum_probs=49.9

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhh-hhhhcC-----CCceecCHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDV-LMMIQR-----PDGKERTRHEF   76 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l-~m~~~~-----~~g~~rt~~e~   76 (104)
                      .+...++|+++|.  .++|+++++.|+|||++++.......   .+........... ......     .....++.++|
T Consensus        99 v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (259)
T 2p35_A           99 LYANAVFQWVPDH--LAVLSQLMDQLESGGVLAVQMPDNLQ---EPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDY  173 (259)
T ss_dssp             EEEESCGGGSTTH--HHHHHHHGGGEEEEEEEEEEEECCTT---SHHHHHHHHHHHHSTTGGGC-------CCCCCHHHH
T ss_pred             EEEeCchhhCCCH--HHHHHHHHHhcCCCeEEEEEeCCCCC---cHHHHHHHHHhcCcchHHHhccccccccCCCCHHHH
Confidence            3567899999764  78999999999999999998853211   1100000000000 000000     12345799999


Q ss_pred             HHHHHhCCCCce
Q 043826           77 MTLATGAGFSGM   88 (104)
Q Consensus        77 ~~ll~~aGf~~~   88 (104)
                      .++|+++||++.
T Consensus       174 ~~~l~~aGf~v~  185 (259)
T 2p35_A          174 FNALSPKSSRVD  185 (259)
T ss_dssp             HHHHGGGEEEEE
T ss_pred             HHHHHhcCCceE
Confidence            999999999743

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=97.98  E-value=1.7e-06  Score=58.24  Aligned_cols=33  Identities=15%  Similarity=0.135  Sum_probs=30.2

Q ss_pred             cccccCCh-----HHHHHHHHHHHhhCCCCCEEEEEee
Q 043826            7 TILHDWND-----EHCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus         7 ~vlH~~~d-----~~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      +++|++++     ++..++|+++++.|+|||++++...
T Consensus       139 ~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          139 NSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             TCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            79999999     7789999999999999999998764

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.92  E-value=1.3e-05  Score=52.40  Aligned_cols=77  Identities=12%  Similarity=-0.020  Sum_probs=51.1

Q ss_pred             ccccCChHH-HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCC
Q 043826            8 ILHDWNDEH-CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFS   86 (104)
Q Consensus         8 vlH~~~d~~-~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~   86 (104)
                      |+|+.++.+ ...+++++.+.|+|||++++. ......+..+.       .. .          ...+++. +++++||+
T Consensus       147 v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~-------~~-~----------~~~~~l~-~l~~~Gf~  206 (230)
T 1fbn_A          147 IYEDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKD-------PK-E----------IFKEQKE-ILEAGGFK  206 (230)
T ss_dssp             EEECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSC-------HH-H----------HHHHHHH-HHHHHTEE
T ss_pred             EEEecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCC-------HH-H----------hhHHHHH-HHHHCCCE
Confidence            457776553 467799999999999999997 32211111110       00 0          1136777 89999999


Q ss_pred             ceEEEEeCCC---eEEEEEEC
Q 043826           87 GMSCERAIGN---LWVMEFYK  104 (104)
Q Consensus        87 ~~~~~~~~~~---~~vie~~~  104 (104)
                      .+++..+.+.   +.++.++|
T Consensus       207 ~~~~~~~~~~~~~~~~v~~~k  227 (230)
T 1fbn_A          207 IVDEVDIEPFEKDHVMFVGIW  227 (230)
T ss_dssp             EEEEEECTTTSTTEEEEEEEE
T ss_pred             EEEEEccCCCccceEEEEEEe
Confidence            9998887654   77777654

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=97.90  E-value=4.2e-05  Score=48.66  Aligned_cols=70  Identities=6%  Similarity=0.023  Sum_probs=49.6

Q ss_pred             cccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCce
Q 043826            9 LHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGM   88 (104)
Q Consensus         9 lH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~   88 (104)
                      +++++.++..++|+++++.|+|||++++.+...+...    .     ....    .......++.+++.++++  ||+++
T Consensus       102 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~----~-----~~~~----~~~~~~~~~~~~l~~~l~--Gf~v~  166 (202)
T 2kw5_A          102 FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ----Y-----NTGG----PKDLDLLPKLETLQSELP--SLNWL  166 (202)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG----G-----TSCC----SSSGGGCCCHHHHHHHCS--SSCEE
T ss_pred             hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccc----C-----CCCC----CCcceeecCHHHHHHHhc--CceEE
Confidence            3456777889999999999999999999887543211    0     0000    001234579999999998  99999


Q ss_pred             EEEEe
Q 043826           89 SCERA   93 (104)
Q Consensus        89 ~~~~~   93 (104)
                      ++...
T Consensus       167 ~~~~~  171 (202)
T 2kw5_A          167 IANNL  171 (202)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87664

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=97.77  E-value=8.3e-05  Score=49.87  Aligned_cols=71  Identities=13%  Similarity=0.113  Sum_probs=51.7

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      -+...++|++++++...+|+++++.|+|||++++......++...+        .        ......+.+++.++++ 
T Consensus       188 i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--------~--------~~~~~~~~~~l~~~~~-  250 (286)
T 3m70_A          188 IVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP--------L--------PFSFTFAENELKEYYK-  250 (286)
T ss_dssp             EEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS--------S--------CCSCCBCTTHHHHHTT-
T ss_pred             EEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC--------C--------CccccCCHHHHHHHhc-
Confidence            3566799999999899999999999999999888776654332111        0        1223456778999994 


Q ss_pred             CCCCceEEE
Q 043826           83 AGFSGMSCE   91 (104)
Q Consensus        83 aGf~~~~~~   91 (104)
                       +|+++...
T Consensus       251 -~~~~~~~~  258 (286)
T 3m70_A          251 -DWEFLEYN  258 (286)
T ss_dssp             -TSEEEEEE
T ss_pred             -CCEEEEEE
Confidence             48887664

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=97.75  E-value=2.9e-06  Score=57.69  Aligned_cols=82  Identities=13%  Similarity=0.252  Sum_probs=48.8

Q ss_pred             Eeccccc----cCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHH
Q 043826            4 CTLTILH----DWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTL   79 (104)
Q Consensus         4 ~~~~vlH----~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~l   79 (104)
                      +..+++|    +|+++...++++++++.|+|||++++...............  ..... +    . .......+++.++
T Consensus       182 ~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~--~~~~~-~----~-~~~~~~p~~~~~~  253 (292)
T 3g07_A          182 LCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLT--ETIYK-N----Y-YRIQLKPEQFSSY  253 (292)
T ss_dssp             EEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHTTTTSC--HHHHH-H----H-HHCCCCGGGHHHH
T ss_pred             EEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCchhhhhhhccc--HHHHh-h----h-hcEEEcHHHHHHH
Confidence            3445553    34888899999999999999999987543211000000000  00010 0    0 1222347899999


Q ss_pred             HHh--CCCCceEEEEe
Q 043826           80 ATG--AGFSGMSCERA   93 (104)
Q Consensus        80 l~~--aGf~~~~~~~~   93 (104)
                      |.+  +||+.+++...
T Consensus       254 L~~~~~GF~~~~~~~~  269 (292)
T 3g07_A          254 LTSPDVGFSSYELVAT  269 (292)
T ss_dssp             HTSTTTCCCEEEEC--
T ss_pred             HHhcCCCceEEEEecc
Confidence            999  99998887654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.68  E-value=0.00019  Score=47.08  Aligned_cols=31  Identities=16%  Similarity=0.286  Sum_probs=26.9

Q ss_pred             cccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 043826            7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVV   37 (104)
Q Consensus         7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~   37 (104)
                      ..+|.+++++..++|+++++.|+|||.+++.
T Consensus       114 ~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          114 STIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             SGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            5677788888999999999999999998763

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=97.64  E-value=0.00015  Score=48.43  Aligned_cols=70  Identities=11%  Similarity=-0.062  Sum_probs=50.2

Q ss_pred             eccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826            5 TLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG   84 (104)
Q Consensus         5 ~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG   84 (104)
                      .+.++|..++++..++++++++.|+|||+++++....+.....                  ......+.+|+.+++++ +
T Consensus       158 ~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~------------------g~~~~~~~~el~~~l~~-~  218 (252)
T 2gb4_A          158 DRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHA------------------GPPFYVPSAELKRLFGT-K  218 (252)
T ss_dssp             ESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCC------------------CSSCCCCHHHHHHHHTT-T
T ss_pred             EhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCC------------------CCCCCCCHHHHHHHhhC-C
Confidence            4568899998888899999999999999998765543221100                  00112578999999987 5


Q ss_pred             CCceEEEEe
Q 043826           85 FSGMSCERA   93 (104)
Q Consensus        85 f~~~~~~~~   93 (104)
                      |+++.....
T Consensus       219 f~v~~~~~~  227 (252)
T 2gb4_A          219 CSMQCLEEV  227 (252)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEecc
Confidence            998876654

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=97.63  E-value=9.9e-05  Score=50.58  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=27.9

Q ss_pred             ecccccc-CChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826            5 TLTILHD-WNDEHCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus         5 ~~~vlH~-~~d~~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      ...++|. |++++..++|+++++.|+|||++++...
T Consensus       135 ~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          135 WQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             EESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            4457876 4545568999999999999999988765

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.62  E-value=6.7e-05  Score=47.91  Aligned_cols=61  Identities=20%  Similarity=0.054  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC
Q 043826           15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI   94 (104)
Q Consensus        15 ~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~   94 (104)
                      +....+++++++.|+|||++++.+...+                             +.+++.++++++||+.+++....
T Consensus       136 ~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~~~~~Gf~~~~~~~~~  186 (205)
T 3grz_A          136 EILLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKIEQALAENSFQIDLKMRAG  186 (205)
T ss_dssp             HHHHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTEEEEEEEEET
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHHHHHHHHcCCceEEeeccC
Confidence            3457899999999999999998654321                             35688899999999999998888


Q ss_pred             CCeEEEEEEC
Q 043826           95 GNLWVMEFYK  104 (104)
Q Consensus        95 ~~~~vie~~~  104 (104)
                      ...+++.-+|
T Consensus       187 ~w~~~~~~~~  196 (205)
T 3grz_A          187 RWIGLAISRK  196 (205)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEecc
Confidence            8888887654

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=97.54  E-value=0.00012  Score=46.88  Aligned_cols=79  Identities=11%  Similarity=0.021  Sum_probs=48.9

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|+++|.  .++|+++++.|+|||++++.+.....    + ...........-.....+.+.+|.+++.++++ 
T Consensus        99 v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~-  170 (211)
T 2gs9_A           99 VLLFTTLEFVEDV--ERVLLEARRVLRPGGALVVGVLEALS----P-WAALYRRLGEKGVLPWAQARFLAREDLKALLG-  170 (211)
T ss_dssp             EEEESCTTTCSCH--HHHHHHHHHHEEEEEEEEEEEECTTS----H-HHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC-
T ss_pred             EEEcChhhhcCCH--HHHHHHHHHHcCCCCEEEEEecCCcC----c-HHHHHHHHhhccCccccccccCCHHHHHHHhc-
Confidence            3566899999865  79999999999999999998864321    1 11000000000000011345689999999998 


Q ss_pred             CCCCceEEEE
Q 043826           83 AGFSGMSCER   92 (104)
Q Consensus        83 aGf~~~~~~~   92 (104)
                       |  .+++..
T Consensus       171 -G--~~~~~~  177 (211)
T 2gs9_A          171 -P--PEAEGE  177 (211)
T ss_dssp             -S--CSEEEE
T ss_pred             -C--cceeEE
Confidence             7  444433

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.52  E-value=9e-05  Score=49.32  Aligned_cols=67  Identities=6%  Similarity=-0.049  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeCC
Q 043826           16 HCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAIG   95 (104)
Q Consensus        16 ~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~   95 (104)
                      +...+++++++.|+|||+++|.......+...+..                    ...++..+.|+++||+.++...+.+
T Consensus       160 ~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~--------------------~~~~~ev~~L~~~GF~l~e~i~L~p  219 (233)
T 4df3_A          160 QAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPS--------------------EVYKREIKTLMDGGLEIKDVVHLDP  219 (233)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCC--------------------HHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             hHHHHHHHHHHhccCCCEEEEEEecccCCCCCChH--------------------HHHHHHHHHHHHCCCEEEEEEccCC
Confidence            45789999999999999999875322111101100                    0112345667889999999988765


Q ss_pred             ---CeEEEEE
Q 043826           96 ---NLWVMEF  102 (104)
Q Consensus        96 ---~~~vie~  102 (104)
                         .|.++-+
T Consensus       220 f~~~H~lv~~  229 (233)
T 4df3_A          220 FDRDHAMIYA  229 (233)
T ss_dssp             TSTTEEEEEE
T ss_pred             CCCceEEEEE
Confidence               3665544

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=97.15  E-value=0.00064  Score=46.19  Aligned_cols=89  Identities=11%  Similarity=-0.020  Sum_probs=52.4

Q ss_pred             EeccccccC-C-hHHHHHHHHHHHhhCCCCCEEEEEeeecCCC------CCCCcccc------h---------hh--hhh
Q 043826            4 CTLTILHDW-N-DEHCLKLLKNCYKSIPEDGKVIVVELMLPEV------PNTSIESK------S---------NF--HFD   58 (104)
Q Consensus         4 ~~~~vlH~~-~-d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~------~~~~~~~~------~---------~~--~~~   58 (104)
                      +...++|.. + .++...+|+++++.|+|||.+++.....++-      ........      +         ..  .+.
T Consensus       119 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~f~  198 (313)
T 3bgv_A          119 SCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFN  198 (313)
T ss_dssp             EEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSCCEEEEE
T ss_pred             EEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCccceEEEE
Confidence            456688876 3 4567899999999999999999886532100      00000000      0         00  000


Q ss_pred             hhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEe
Q 043826           59 VLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERA   93 (104)
Q Consensus        59 l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~   93 (104)
                      +...... .....+.+++.++++++||+.+.....
T Consensus       199 l~~~~~~-~~~~~~~~~~~~l~~~~G~~~v~~~~f  232 (313)
T 3bgv_A          199 LEGVVDV-PEFLVYFPLLNEMAKKYNMKLVYKKTF  232 (313)
T ss_dssp             EC---CC-EEECCCHHHHHHHGGGGTEEEEEEEEH
T ss_pred             ECCcccC-cceEEcHHHHHHHHHHcCcEEEEecCH
Confidence            0000000 123367899999999999999987653

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.08  E-value=0.00079  Score=43.55  Aligned_cols=74  Identities=12%  Similarity=0.003  Sum_probs=46.9

Q ss_pred             ccCChH-HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCce
Q 043826           10 HDWNDE-HCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGM   88 (104)
Q Consensus        10 H~~~d~-~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~   88 (104)
                      ++.+.+ ....+++++++.|+|||++++. ....+....+.       .           ...+.+++.++ .++ |+.+
T Consensus       149 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~-------~-----------~~~~~~~l~~l-~~~-f~~~  207 (227)
T 1g8a_A          149 EDVAQPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTKE-------P-----------EQVFREVEREL-SEY-FEVI  207 (227)
T ss_dssp             ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTSC-------H-----------HHHHHHHHHHH-HTT-SEEE
T ss_pred             ECCCCHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCCC-------h-----------hhhhHHHHHHH-Hhh-ceee
Confidence            444433 3445699999999999999998 32221111110       0           01235678887 777 9999


Q ss_pred             EEEEeCCC---eEEEEEEC
Q 043826           89 SCERAIGN---LWVMEFYK  104 (104)
Q Consensus        89 ~~~~~~~~---~~vie~~~  104 (104)
                      +.....+.   +.++.++|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~  226 (227)
T 1g8a_A          208 ERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             EEEECTTTSSSEEEEEEEC
T ss_pred             eEeccCcccCCCEEEEEEe
Confidence            98887654   67777664

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.0004  Score=46.90  Aligned_cols=35  Identities=17%  Similarity=0.325  Sum_probs=28.8

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELM   40 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~   40 (104)
                      -+...++|++ |  ..++++++++.|+|||++++.+..
T Consensus       117 V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~~  151 (299)
T 3g5t_A          117 ITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGYA  151 (299)
T ss_dssp             EEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEecC
Confidence            3556789999 4  479999999999999999996554

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.03  E-value=0.0028  Score=42.34  Aligned_cols=60  Identities=10%  Similarity=0.041  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEe-
Q 043826           15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERA-   93 (104)
Q Consensus        15 ~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-   93 (104)
                      +...++++++.+.|+|||++++..        +                      ..+.+++.++++++||+.+++..- 
T Consensus       215 ~~~~~~l~~~~~~LkpgG~l~~~~--------~----------------------~~~~~~~~~~l~~~Gf~~v~~~~d~  264 (276)
T 2b3t_A          215 ADIVHIIEQSRNALVSGGFLLLEH--------G----------------------WQQGEAVRQAFILAGYHDVETCRDY  264 (276)
T ss_dssp             HHHHHHHHHHGGGEEEEEEEEEEC--------C----------------------SSCHHHHHHHHHHTTCTTCCEEECT
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEE--------C----------------------chHHHHHHHHHHHCCCcEEEEEecC
Confidence            346889999999999999998751        0                      013678999999999998887764 


Q ss_pred             CCCeEEEEEEC
Q 043826           94 IGNLWVMEFYK  104 (104)
Q Consensus        94 ~~~~~vie~~~  104 (104)
                      .+...++.+++
T Consensus       265 ~g~~r~~~~~~  275 (276)
T 2b3t_A          265 GDNERVTLGRY  275 (276)
T ss_dssp             TSSEEEEEEEC
T ss_pred             CCCCcEEEEEE
Confidence            45666666654

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.00  E-value=0.00041  Score=47.10  Aligned_cols=35  Identities=9%  Similarity=0.116  Sum_probs=31.3

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVV   37 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~   37 (104)
                      -+.+++|++++++...+++++++++|+|||.+++-
T Consensus       217 I~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          217 IFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             EEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            35678999999998999999999999999999873

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=96.96  E-value=0.00028  Score=45.37  Aligned_cols=66  Identities=9%  Similarity=0.022  Sum_probs=40.8

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC
Q 043826           18 LKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI   94 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~   94 (104)
                      .++|+++++.|+|||++++.-....-.+..+.      ..+.     ......+..+++.++++++||++.++....
T Consensus       120 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~------~~~~-----~~~~~~~~~~~l~~~l~~aGf~i~~~~~~~  185 (218)
T 3mq2_A          120 PEMLRGMAAVCRPGASFLVALNLHAWRPSVPE------VGEH-----PEPTPDSADEWLAPRYAEAGWKLADCRYLE  185 (218)
T ss_dssp             SHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGG------GTTC-----CCCCHHHHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHHHcCCCcEEEEEeccccccccccc------cccC-----CccchHHHHHHHHHHHHHcCCCceeeeccc
Confidence            78999999999999999984332211110100      0010     001222345568899999999999877653

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=96.96  E-value=0.00031  Score=46.02  Aligned_cols=68  Identities=7%  Similarity=-0.014  Sum_probs=38.9

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC
Q 043826           18 LKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI   94 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~   94 (104)
                      ..+|+++++.|+|||++++.....+. ....+..    ......   . .......+|+.++++++||++..+....
T Consensus       119 ~~~l~~~~r~LkpGG~l~i~~~~~~~-~~~~~~~----~~~~~~---~-~~~~~~~~el~~~l~~aGf~v~~~~~~~  186 (225)
T 3p2e_A          119 RDILSNVADLAKKEAHFEFVTTYSDS-YEEAEIK----KRGLPL---L-SKAYFLSEQYKAELSNSGFRIDDVKELD  186 (225)
T ss_dssp             HHHHHHHHTTEEEEEEEEEEECCCC----------------------C-CHHHHHSHHHHHHHHHHTCEEEEEEEEC
T ss_pred             HHHHHHHHHhcCCCcEEEEEEecccc-chhchhh----hcCCCC---C-ChhhcchHHHHHHHHHcCCCeeeeeecC
Confidence            46899999999999999995544332 1110000    001000   0 1111122369999999999998877654

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.91  E-value=7.5e-05  Score=49.21  Aligned_cols=68  Identities=10%  Similarity=0.006  Sum_probs=40.6

Q ss_pred             ccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCC
Q 043826            6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGF   85 (104)
Q Consensus         6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf   85 (104)
                      ...+++++|  ...+++++++.|+|||+++.++..........       .++        +-.....+.+...|.++||
T Consensus       140 ~~~~~~~~~--~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~-------~~~--------~~~~~~~~~~~~~L~eaGF  202 (236)
T 3orh_A          140 SEETWHTHQ--FNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS-------KYS--------DITIMFEETQVPALLEAGF  202 (236)
T ss_dssp             BGGGTTTHH--HHHHHHTHHHHEEEEEEEEECCHHHHHHHTTT-------TCS--------CHHHHHHHHTHHHHHHHTC
T ss_pred             ccchhhhcc--hhhhhhhhhheeCCCCEEEEEecCCchhhhhh-------hhh--------hhhhhhHHHHHHHHHHcCC
Confidence            334455544  58999999999999999987754321110000       010        1111224567777889999


Q ss_pred             CceEE
Q 043826           86 SGMSC   90 (104)
Q Consensus        86 ~~~~~   90 (104)
                      +.+.+
T Consensus       203 ~~~~i  207 (236)
T 3orh_A          203 RRENI  207 (236)
T ss_dssp             CGGGE
T ss_pred             eEEEE
Confidence            97654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.89  E-value=0.0023  Score=42.45  Aligned_cols=60  Identities=12%  Similarity=0.164  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC
Q 043826           15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI   94 (104)
Q Consensus        15 ~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~   94 (104)
                      +....+++++.+.|+|||++++.+...+                             +.+++.++++++||+.+++....
T Consensus       195 ~~~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~~~~  245 (254)
T 2nxc_A          195 ELHAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREAMAGAGFRPLEEAAEG  245 (254)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTCEEEEEEEET
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------CHHHHHHHHHHCCCEEEEEeccC
Confidence            3467899999999999999999764321                             25689999999999999887765


Q ss_pred             CCeEEEEEEC
Q 043826           95 GNLWVMEFYK  104 (104)
Q Consensus        95 ~~~~vie~~~  104 (104)
                      .... +.++|
T Consensus       246 ~W~~-l~~~k  254 (254)
T 2nxc_A          246 EWVL-LAYGR  254 (254)
T ss_dssp             TEEE-EEEEC
T ss_pred             CeEE-EEEEC
Confidence            4443 44544

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=96.88  E-value=0.00079  Score=43.05  Aligned_cols=37  Identities=14%  Similarity=0.158  Sum_probs=31.4

Q ss_pred             EEeccccccCCh-HHHHHHHHHHHhhCCCCCEEEEEee
Q 043826            3 NCTLTILHDWND-EHCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus         3 y~~~~vlH~~~d-~~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      .+...++|+++| ++..++|+++++.|+|||.+++...
T Consensus       118 v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          118 IVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             EEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            356689999997 4567999999999999999998775

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=96.85  E-value=0.00093  Score=43.48  Aligned_cols=69  Identities=7%  Similarity=-0.065  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC
Q 043826           15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI   94 (104)
Q Consensus        15 ~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~   94 (104)
                      +....+++++.+.|+|||++++ +.........+..      ..            +-..+ .++++++||+.+++....
T Consensus       159 ~~~~~~~~~~~~~LkpgG~l~i-~~~~~~~~~~~~~------~~------------~~~~~-~~~l~~~Gf~~~~~~~~~  218 (233)
T 2ipx_A          159 DQTRIVALNAHTFLRNGGHFVI-SIKANCIDSTASA------EA------------VFASE-VKKMQQENMKPQEQLTLE  218 (233)
T ss_dssp             THHHHHHHHHHHHEEEEEEEEE-EEEHHHHCSSSCH------HH------------HHHHH-HHTTGGGTEEEEEEEECT
T ss_pred             cHHHHHHHHHHHHcCCCeEEEE-EEcccccccCCCH------HH------------HHHHH-HHHHHHCCCceEEEEecC
Confidence            4456789999999999999998 3322110000000      00            00123 588999999999987775


Q ss_pred             CC---eEEEEEE
Q 043826           95 GN---LWVMEFY  103 (104)
Q Consensus        95 ~~---~~vie~~  103 (104)
                      +.   +.++.++
T Consensus       219 ~~~~~~~~v~~~  230 (233)
T 2ipx_A          219 PYERDHAVVVGV  230 (233)
T ss_dssp             TTSSSEEEEEEE
T ss_pred             CccCCcEEEEEE
Confidence            43   6666654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.62  E-value=0.00087  Score=43.70  Aligned_cols=33  Identities=9%  Similarity=0.261  Sum_probs=26.9

Q ss_pred             ccccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826            8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELM   40 (104)
Q Consensus         8 vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~   40 (104)
                      ..|++..+....+++++++.|+|||++++++..
T Consensus       140 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          140 SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             chhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            356666666678999999999999999988754

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.59  E-value=0.0022  Score=40.51  Aligned_cols=56  Identities=9%  Similarity=-0.035  Sum_probs=39.4

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH--hCCCCceEEEEeC-
Q 043826           18 LKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT--GAGFSGMSCERAI-   94 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~--~aGf~~~~~~~~~-   94 (104)
                      .++++++++.|+|||++++++...                             ...+++.++++  ++||..+++.... 
T Consensus       144 ~~~l~~~~~~LkpgG~l~~~~~~~-----------------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~  194 (215)
T 4dzr_A          144 RRMAALPPYVLARGRAGVFLEVGH-----------------------------NQADEVARLFAPWRERGFRVRKVKDLR  194 (215)
T ss_dssp             HHHHTCCGGGBCSSSEEEEEECTT-----------------------------SCHHHHHHHTGGGGGGTEECCEEECTT
T ss_pred             HHHHHHHHHHhcCCCeEEEEEECC-----------------------------ccHHHHHHHHHHhhcCCceEEEEEecC
Confidence            789999999999999966665310                             12456777888  8899888777654 


Q ss_pred             CCeEEEEE
Q 043826           95 GNLWVMEF  102 (104)
Q Consensus        95 ~~~~vie~  102 (104)
                      +...++.+
T Consensus       195 ~~~r~~~~  202 (215)
T 4dzr_A          195 GIDRVIAV  202 (215)
T ss_dssp             SCEEEEEE
T ss_pred             CCEEEEEE
Confidence            33444444

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=96.53  E-value=0.0027  Score=39.40  Aligned_cols=63  Identities=13%  Similarity=0.171  Sum_probs=45.9

Q ss_pred             CChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEE
Q 043826           12 WNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCE   91 (104)
Q Consensus        12 ~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~   91 (104)
                      ++.+...++++++.+.|+|||++++......                             ...++.+++++. |..+++.
T Consensus       131 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~l~~~-~~~~~~~  180 (194)
T 1dus_A          131 AGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ-----------------------------GAKSLAKYMKDV-FGNVETV  180 (194)
T ss_dssp             TCHHHHHHHHHHHHHHEEEEEEEEEEEESTH-----------------------------HHHHHHHHHHHH-HSCCEEE
T ss_pred             cchhHHHHHHHHHHHHcCCCCEEEEEECCCC-----------------------------ChHHHHHHHHHH-hcceEEE
Confidence            4456678999999999999999998875221                             012566667766 6777777


Q ss_pred             EeCCCeEEEEEEC
Q 043826           92 RAIGNLWVMEFYK  104 (104)
Q Consensus        92 ~~~~~~~vie~~~  104 (104)
                      .....+.++.++|
T Consensus       181 ~~~~~~~~~~~~k  193 (194)
T 1dus_A          181 TIKGGYRVLKSKK  193 (194)
T ss_dssp             EEETTEEEEEEEC
T ss_pred             ecCCcEEEEEEee
Confidence            7777788887775

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=96.51  E-value=0.0037  Score=42.08  Aligned_cols=35  Identities=9%  Similarity=0.085  Sum_probs=30.9

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      +...++|++++++....++++++.| |||++++.-.
T Consensus       115 v~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          115 LNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             EEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence            4567999999999999999999999 9999998754

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=96.49  E-value=0.0055  Score=38.85  Aligned_cols=45  Identities=9%  Similarity=0.237  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEE
Q 043826           16 HCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSC   90 (104)
Q Consensus        16 ~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~   90 (104)
                      +..++++++.+.|+|||++++.....+                             +.+++.++++++|| .+++
T Consensus       120 ~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------------~~~~~~~~l~~~g~-~~~~  164 (204)
T 3e05_A          120 MLEEIIDAVDRRLKSEGVIVLNAVTLD-----------------------------TLTKAVEFLEDHGY-MVEV  164 (204)
T ss_dssp             CHHHHHHHHHHHCCTTCEEEEEECBHH-----------------------------HHHHHHHHHHHTTC-EEEE
T ss_pred             CHHHHHHHHHHhcCCCeEEEEEecccc-----------------------------cHHHHHHHHHHCCC-ceeE
Confidence            457999999999999999998543110                             35578888999998 4443

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=96.41  E-value=0.02  Score=35.48  Aligned_cols=49  Identities=6%  Similarity=0.087  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC
Q 043826           16 HCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI   94 (104)
Q Consensus        16 ~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~   94 (104)
                      +...+++++.+.+ |||++++.+...                             .+.+++.++++++||+...+....
T Consensus       102 ~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~~~~~~  150 (170)
T 3q87_B          102 LGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRILKVRK  150 (170)
T ss_dssp             GGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             chHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEEEEeec
Confidence            4577889999999 999998877311                             135688999999999998887763

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=96.27  E-value=0.0068  Score=41.51  Aligned_cols=67  Identities=16%  Similarity=0.167  Sum_probs=40.5

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecCCCCCCCc-ccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEe
Q 043826           18 LKLLKNCYKSIPEDGKVIVVELMLPEVPNTSI-ESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERA   93 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~-~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~   93 (104)
                      ..+|+++++.|+|||++++.-  .|.-...+. ..+.....|-       .-..++.+++.++++++||+...+...
T Consensus       165 ~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~~~~~~~G~vrd~-------~~~~~~~~~v~~~~~~~Gf~v~~~~~s  232 (291)
T 3hp7_A          165 NLILPALAKILVDGGQVVALV--KPQFEAGREQIGKNGIVRES-------SIHEKVLETVTAFAVDYGFSVKGLDFS  232 (291)
T ss_dssp             GGTHHHHHHHSCTTCEEEEEE--CGGGTSCGGGCC-CCCCCCH-------HHHHHHHHHHHHHHHHTTEEEEEEEEC
T ss_pred             HHHHHHHHHHcCcCCEEEEEE--CcccccChhhcCCCCccCCH-------HHHHHHHHHHHHHHHHCCCEEEEEEEC
Confidence            679999999999999999862  111100000 0000000110       011246788999999999998877664

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=96.26  E-value=0.0053  Score=40.64  Aligned_cols=76  Identities=12%  Similarity=-0.004  Sum_probs=42.6

Q ss_pred             cccCChHH-HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCc
Q 043826            9 LHDWNDEH-CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSG   87 (104)
Q Consensus         9 lH~~~d~~-~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~   87 (104)
                      +.|.+.++ ...+++++.+.|+|||++++.-...  .            .|.+.     +-. -..++..+.++++||+.
T Consensus       151 ~~d~a~~~~~~il~~~~~~~LkpGG~lvisik~~--~------------~d~t~-----~~~-e~~~~~~~~L~~~gf~~  210 (232)
T 3id6_C          151 YVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKAR--S------------IDVTK-----DPK-EIYKTEVEKLENSNFET  210 (232)
T ss_dssp             EECCCCTTHHHHHHHHHHHHEEEEEEEEEEEC---------------------C-----CSS-SSTTHHHHHHHHTTEEE
T ss_pred             EecCCChhHHHHHHHHHHHhCCCCeEEEEEEccC--C------------cccCC-----CHH-HHHHHHHHHHHHCCCEE
Confidence            34444333 3444566667999999999873111  0            11000     000 01123455677899999


Q ss_pred             eEEEEeCC---CeEEEEEEC
Q 043826           88 MSCERAIG---NLWVMEFYK  104 (104)
Q Consensus        88 ~~~~~~~~---~~~vie~~~  104 (104)
                      .+...+.+   .+.++.++|
T Consensus       211 ~~~~~l~p~~~~h~~v~~~~  230 (232)
T 3id6_C          211 IQIINLDPYDKDHAIVLSKY  230 (232)
T ss_dssp             EEEEECTTTCSSCEEEEEEE
T ss_pred             EEEeccCCCcCceEEEEEEe
Confidence            99998855   377776653

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.21  E-value=0.018  Score=40.00  Aligned_cols=82  Identities=11%  Similarity=0.114  Sum_probs=53.9

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhh-h-hcCCC-ceecCHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLM-M-IQRPD-GKERTRHEFMT   78 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m-~-~~~~~-g~~rt~~e~~~   78 (104)
                      +.+.--+|+.++.+++.++|+.+.+.. |+|.+++.|.+.+..+..+. ++. ....+.- . ....+ ....|.++..+
T Consensus       197 l~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~f-g~~-m~~~l~~~rg~~l~~~~~y~s~~~~~~  273 (334)
T 1rjd_A          197 IVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRF-GAI-MQSNLKESRNLEMPTLMTYNSKEKYAS  273 (334)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCH-HHH-HHHHHHHHHCCCCTTTTTTCSHHHHHG
T ss_pred             EEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchH-HHH-HHHHhhcccCCcccccccCCCHHHHHH
Confidence            455667899999999999999999987 78888899998773332221 110 0011111 0 01111 23458899999


Q ss_pred             HHHhCCCC
Q 043826           79 LATGAGFS   86 (104)
Q Consensus        79 ll~~aGf~   86 (104)
                      .|.++||+
T Consensus       274 rl~~~Gf~  281 (334)
T 1rjd_A          274 RWSAAPNV  281 (334)
T ss_dssp             GGTTSSEE
T ss_pred             HHHHCCCC
Confidence            99999997

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=96.19  E-value=0.00053  Score=45.25  Aligned_cols=67  Identities=19%  Similarity=0.181  Sum_probs=40.3

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecCCCCCCCc-ccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEe
Q 043826           18 LKLLKNCYKSIPEDGKVIVVELMLPEVPNTSI-ESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERA   93 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~-~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~   93 (104)
                      ..+|+++++.|+|||++++.-  .|.-..... ..+.....|-       ....++.+++.++++++||++..+...
T Consensus       117 ~~~l~~i~rvLkpgG~lv~~~--~p~~e~~~~~~~~~G~~~d~-------~~~~~~~~~l~~~l~~aGf~v~~~~~~  184 (232)
T 3opn_A          117 DLILPPLYEILEKNGEVAALI--KPQFEAGREQVGKNGIIRDP-------KVHQMTIEKVLKTATQLGFSVKGLTFS  184 (232)
T ss_dssp             GGTHHHHHHHSCTTCEEEEEE--CHHHHSCHHHHC-CCCCCCH-------HHHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred             HHHHHHHHHhccCCCEEEEEE--CcccccCHHHhCcCCeecCc-------chhHHHHHHHHHHHHHCCCEEEEEEEc
Confidence            679999999999999999852  110000000 0000000010       111247789999999999999887654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=95.89  E-value=0.014  Score=36.01  Aligned_cols=43  Identities=23%  Similarity=0.381  Sum_probs=32.3

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCce
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGM   88 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~   88 (104)
                      ...+++++.+.|+|||++++.....                             .+..++.++++++||...
T Consensus       113 ~~~~l~~~~~~l~~gG~l~~~~~~~-----------------------------~~~~~~~~~l~~~g~~~~  155 (192)
T 1l3i_A          113 LQEILRIIKDKLKPGGRIIVTAILL-----------------------------ETKFEAMECLRDLGFDVN  155 (192)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEECBH-----------------------------HHHHHHHHHHHHTTCCCE
T ss_pred             HHHHHHHHHHhcCCCcEEEEEecCc-----------------------------chHHHHHHHHHHCCCceE
Confidence            4789999999999999998865310                             023577888999999543

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=95.88  E-value=0.032  Score=43.65  Aligned_cols=90  Identities=10%  Similarity=0.076  Sum_probs=51.3

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC---CC--CcccchhhhhhhhhhhcCCCceecCHHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVP---NT--SIESKSNFHFDVLMMIQRPDGKERTRHEFM   77 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~---~~--~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~   77 (104)
                      .+...++|++++++...+++++++.|+|| .++|.....+.+.   ..  ..............+....+..+++.++++
T Consensus       800 VV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~DHrFEWTReEFr  878 (950)
T 3htx_A          800 GTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHDHKFEWTREQFN  878 (950)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCSCSSCSCCBCHHHHH
T ss_pred             EEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccccccCcceeecHHHHH
Confidence            34567999999998899999999999999 7766654322110   00  000000000000011112245668899998


Q ss_pred             HH----HHhCCCCceEEEEeC
Q 043826           78 TL----ATGAGFSGMSCERAI   94 (104)
Q Consensus        78 ~l----l~~aGf~~~~~~~~~   94 (104)
                      .|    .+..||+. ++..++
T Consensus       879 ~Wae~LAer~GYsV-efvGVG  898 (950)
T 3htx_A          879 QWASKLGKRHNYSV-EFSGVG  898 (950)
T ss_dssp             HHHHHHHHHTTEEE-EEEEES
T ss_pred             HHHHHHHHhcCcEE-EEEccC
Confidence            85    55668854 455554

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=95.85  E-value=0.006  Score=40.77  Aligned_cols=36  Identities=8%  Similarity=0.019  Sum_probs=28.4

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP   42 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~   42 (104)
                      +...++|..+.   .+.++++++.|+|||+++++....+
T Consensus       104 ~~~~~~h~~~~---~~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A          104 IAAQAMHWFDL---DRFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             EECSCCTTCCH---HHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             EEeeehhHhhH---HHHHHHHHHHcCCCCEEEEEECCCC
Confidence            45678876654   4689999999999999999886543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=95.80  E-value=0.013  Score=42.26  Aligned_cols=31  Identities=16%  Similarity=0.255  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHhhCCCCCEEEEEeeecCCCC
Q 043826           15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEVP   45 (104)
Q Consensus        15 ~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~   45 (104)
                      ++..+.|+++++.|+|||++++.|.+.+++.
T Consensus       265 pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~  295 (438)
T 3uwp_A          265 PEVDHQLKERFANMKEGGRIVSSKPFAPLNF  295 (438)
T ss_dssp             HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred             chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence            4457778999999999999999999987764

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=95.65  E-value=0.031  Score=38.04  Aligned_cols=51  Identities=12%  Similarity=0.136  Sum_probs=38.1

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEe
Q 043826           18 LKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERA   93 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~   93 (104)
                      .+++++++++|+|||++++...    .   +       ..+           ..+..++.+.++++||..+++...
T Consensus       190 ~~~l~~~~~~LkpgG~lv~~~~----~---~-------~~~-----------~~~~~~~~~~l~~~GF~~v~~~~~  240 (304)
T 3bwc_A          190 EAFYKDVLRILKPDGICCNQGE----S---I-------WLD-----------LELIEKMSRFIRETGFASVQYALM  240 (304)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEC----C---T-------TTC-----------HHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred             HHHHHHHHHhcCCCcEEEEecC----C---c-------ccc-----------hHHHHHHHHHHHhCCCCcEEEEEe
Confidence            6899999999999999988731    1   1       011           113568899999999999887764

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=95.63  E-value=0.028  Score=37.08  Aligned_cols=60  Identities=10%  Similarity=0.023  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC
Q 043826           15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI   94 (104)
Q Consensus        15 ~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~   94 (104)
                      .....+++.+.+.|+|||+++++-   +.                           ...+++.+++++.||...++..+.
T Consensus       153 ~~~~~~l~~~~~~LkpgG~l~~~~---~~---------------------------~~~~~~~~~l~~~~~~~~~~~~v~  202 (259)
T 3lpm_A          153 CTLEDTIRVAASLLKQGGKANFVH---RP---------------------------ERLLDIIDIMRKYRLEPKRIQFVH  202 (259)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEE---CT---------------------------TTHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHccCCcEEEEEE---cH---------------------------HHHHHHHHHHHHCCCceEEEEEee
Confidence            345689999999999999999842   11                           024467778888999988777652


Q ss_pred             ------CCeEEEEEEC
Q 043826           95 ------GNLWVMEFYK  104 (104)
Q Consensus        95 ------~~~~vie~~~  104 (104)
                            ....+++++|
T Consensus       203 ~~~~~~~~~~l~~~~k  218 (259)
T 3lpm_A          203 PRSDREANTVLVEGIK  218 (259)
T ss_dssp             SSTTSCCSEEEEEEEE
T ss_pred             cCCCCCcEEEEEEEEe
Confidence                  2466777654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=95.34  E-value=0.036  Score=35.52  Aligned_cols=58  Identities=17%  Similarity=0.212  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeCC-
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAIG-   95 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~-   95 (104)
                      ..++++++.+.|+|||++++.-.   ..            .             .+.+++.++++++||+...+....+ 
T Consensus       158 ~~~~l~~~~~~LkpgG~l~~~~~---~~------------~-------------~~~~~~~~~l~~~g~~~~~~~~~~g~  209 (230)
T 3evz_A          158 SVKLLEEAFDHLNPGGKVALYLP---DK------------E-------------KLLNVIKERGIKLGYSVKDIKFKVGT  209 (230)
T ss_dssp             HHHHHHHHGGGEEEEEEEEEEEE---SC------------H-------------HHHHHHHHHHHHTTCEEEEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCeEEEEEec---cc------------H-------------hHHHHHHHHHHHcCCceEEEEecCCC
Confidence            47899999999999999998621   10            0             1246888999999997766644433 


Q ss_pred             -CeEEEEE
Q 043826           96 -NLWVMEF  102 (104)
Q Consensus        96 -~~~vie~  102 (104)
                       ...++..
T Consensus       210 ~~~~~l~f  217 (230)
T 3evz_A          210 RWRHSLIF  217 (230)
T ss_dssp             -CEEEEEE
T ss_pred             eEEEEEEE
Confidence             3444444

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=95.29  E-value=0.052  Score=37.80  Aligned_cols=86  Identities=12%  Similarity=-0.036  Sum_probs=54.7

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhh-cCCC-ceecCHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMI-QRPD-GKERTRHEFMTL   79 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~-~~~~-g~~rt~~e~~~l   79 (104)
                      +.+.=-+|..++.+++.++|+.+.+..+ +|.+++.|.+.+.++    .++. ....+.-.. ...+ ....|.++..++
T Consensus       194 l~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~----fg~~-M~~~l~~~g~pl~sl~~y~t~~~~~~r  267 (334)
T 3iei_A          194 LLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDR----FGQI-MIENLRRRQCDLAGVETCKSLESQKER  267 (334)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSH----HHHH-HHHHHHTTTCCCTTGGGGGCHHHHHHH
T ss_pred             EEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCH----HHHH-HHHHHHHhCCCCcccccCCCHHHHHHH
Confidence            3455568899999999999999999775 556778898865431    1110 000111000 0001 123578999999


Q ss_pred             HHhCCCCceEEEEe
Q 043826           80 ATGAGFSGMSCERA   93 (104)
Q Consensus        80 l~~aGf~~~~~~~~   93 (104)
                      |.++||+.+++...
T Consensus       268 ~~~~Gw~~~~~~d~  281 (334)
T 3iei_A          268 LLSNGWETASAVDM  281 (334)
T ss_dssp             HHTTTCSEEEEEEH
T ss_pred             HHHcCCCcceeecH
Confidence            99999998876654

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=95.28  E-value=0.047  Score=35.09  Aligned_cols=63  Identities=14%  Similarity=0.160  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHH-----HHHHHHHhCCCCceEE
Q 043826           16 HCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRH-----EFMTLATGAGFSGMSC   90 (104)
Q Consensus        16 ~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~-----e~~~ll~~aGf~~~~~   90 (104)
                      +...+++++++.|+|||++++.-...+              .+.     .     .+.+     ++.. ++++ |++++.
T Consensus       139 ~~~~~l~~~~r~LkpgG~l~i~~~~~~--------------~~~-----~-----~~~~~~~~~~~~~-l~~~-f~~~~~  192 (210)
T 1nt2_A          139 QIEILKANAEFFLKEKGEVVIMVKARS--------------IDS-----T-----AEPEEVFKSVLKE-MEGD-FKIVKH  192 (210)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEEHHH--------------HCT-----T-----SCHHHHHHHHHHH-HHTT-SEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEEecCC--------------ccc-----c-----CCHHHHHHHHHHH-HHhh-cEEeee
Confidence            345679999999999999998832110              110     0     1122     2333 7888 999999


Q ss_pred             EEeCC---CeEEEEEEC
Q 043826           91 ERAIG---NLWVMEFYK  104 (104)
Q Consensus        91 ~~~~~---~~~vie~~~  104 (104)
                      ....+   .+.++.++|
T Consensus       193 ~~~~p~~~~h~~~~~~~  209 (210)
T 1nt2_A          193 GSLMPYHRDHIFIHAYR  209 (210)
T ss_dssp             EECTTTCTTEEEEEEEE
T ss_pred             ecCCCCCCCcEEEEEEc
Confidence            88843   566666653

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.25  E-value=0.0071  Score=38.17  Aligned_cols=27  Identities=11%  Similarity=0.162  Sum_probs=23.4

Q ss_pred             hHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826           14 DEHCLKLLKNCYKSIPEDGKVIVVELM   40 (104)
Q Consensus        14 d~~~~~iL~~~~~aL~pgg~l~i~d~~   40 (104)
                      .++..++|+++++.|+|||++++.+..
T Consensus       135 ~~~~~~~l~~~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A          135 VHTVDQVLSEVSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             hHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence            345789999999999999999998854

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=94.99  E-value=0.0092  Score=39.32  Aligned_cols=35  Identities=14%  Similarity=0.098  Sum_probs=26.9

Q ss_pred             eccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826            5 TLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELM   40 (104)
Q Consensus         5 ~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~   40 (104)
                      ...+++++.++ ..++|+++++.|+|||++++....
T Consensus       120 ~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          120 ALGDVLSYVEN-KDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             ECSSHHHHCSC-HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             Ecchhhhcccc-HHHHHHHHHHHcCCCeEEEEEeCC
Confidence            34456666433 689999999999999999987753

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=94.77  E-value=0.0038  Score=40.37  Aligned_cols=47  Identities=9%  Similarity=0.038  Sum_probs=33.0

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEe
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERA   93 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~   93 (104)
                      ..++|+++++.|+|||+++  .                            .+...+.+++.++++++||+..++...
T Consensus       121 ~~~~l~~~~~~LkpgG~l~--~----------------------------~~~~~~~~~~~~~l~~~Gf~~~~~~~~  167 (226)
T 3m33_A          121 PTSVILRLPELAAPDAHFL--Y----------------------------VGPRLNVPEVPERLAAVGWDIVAEDHV  167 (226)
T ss_dssp             CSGGGGGHHHHEEEEEEEE--E----------------------------EESSSCCTHHHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEE--E----------------------------eCCcCCHHHHHHHHHHCCCeEEEEEee
Confidence            3578888999999999988  0                            001123457888888999988776543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.43  E-value=0.27  Score=37.10  Aligned_cols=87  Identities=16%  Similarity=0.132  Sum_probs=55.6

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhh-cCCC-ceecCHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMI-QRPD-GKERTRHEFMTL   79 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~-~~~~-g~~rt~~e~~~l   79 (104)
                      +++.=-+|..++.+++.++|+.+.+ + |+|.+++.|.+.+..+..+. ++. ....+.... .+.. ....+.++..++
T Consensus       220 l~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~f-~~~-m~~~~~~~g~~l~~~~~~~~~~~~~~~  295 (695)
T 2zwa_A          220 VFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEPF-SKQ-MLAHFKRNDSPLQSVLKYNTIESQVQR  295 (695)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSHH-HHH-HHHHHHHTTCCCCGGGTCCSHHHHHHH
T ss_pred             EEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCChH-HHH-HHHHHHHcCCCCCccccCCCHHHHHHH
Confidence            3455568889999999999999984 5 68899999988765443221 111 011111100 0101 123579999999


Q ss_pred             HHhCCCCceEEEE
Q 043826           80 ATGAGFSGMSCER   92 (104)
Q Consensus        80 l~~aGf~~~~~~~   92 (104)
                      |.++||+.+....
T Consensus       296 ~~~~Gw~~v~~~~  308 (695)
T 2zwa_A          296 FNKLGFAYVNVGD  308 (695)
T ss_dssp             HHHTTCCEEEEEE
T ss_pred             HHHCCCCCcceee
Confidence            9999998766553

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=94.32  E-value=0.087  Score=33.57  Aligned_cols=33  Identities=9%  Similarity=0.006  Sum_probs=25.0

Q ss_pred             cccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 043826            9 LHDWNDEHCLKLLKNCYKSIPEDGKVIVVELML   41 (104)
Q Consensus         9 lH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~   41 (104)
                      +.+.+.+....+++++.+.|+|||.+++.+...
T Consensus       138 ~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~  170 (223)
T 3duw_A          138 FIDADKQNNPAYFEWALKLSRPGTVIIGDNVVR  170 (223)
T ss_dssp             EECSCGGGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred             EEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            334445566899999999999999887766544

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=94.26  E-value=0.019  Score=39.61  Aligned_cols=36  Identities=14%  Similarity=0.248  Sum_probs=28.7

Q ss_pred             Eecccccc---CChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826            4 CTLTILHD---WNDEHCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus         4 ~~~~vlH~---~~d~~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      +....+|+   ++.+...++++++++.|+|||++++...
T Consensus       266 v~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  304 (343)
T 2pjd_A          266 ISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (343)
T ss_dssp             EECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             EECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence            34456665   3556689999999999999999999875

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=94.20  E-value=0.022  Score=37.16  Aligned_cols=55  Identities=7%  Similarity=0.039  Sum_probs=39.4

Q ss_pred             ccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC--C
Q 043826            8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG--F   85 (104)
Q Consensus         8 vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG--f   85 (104)
                      |+.++++.  .++++++.+.|+|||++++.....+                             ..+++.++++++|  |
T Consensus       166 v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~l~~~g~~f  214 (255)
T 3mb5_A          166 VILDLPQP--ERVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLHEKLREFKDYF  214 (255)
T ss_dssp             EEECSSCG--GGGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHHHHHHHTGGGB
T ss_pred             EEECCCCH--HHHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHHHHHHHcCCCc
Confidence            34466665  6789999999999999988642110                             1346777888899  8


Q ss_pred             CceEEEEe
Q 043826           86 SGMSCERA   93 (104)
Q Consensus        86 ~~~~~~~~   93 (104)
                      ..+++...
T Consensus       215 ~~~~~~e~  222 (255)
T 3mb5_A          215 MKPRTINV  222 (255)
T ss_dssp             SCCEEECC
T ss_pred             cccEEEEE
Confidence            88877654

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=94.08  E-value=0.054  Score=33.08  Aligned_cols=22  Identities=14%  Similarity=0.452  Sum_probs=19.5

Q ss_pred             HHHHHHHHhhCCCCCEEEEEee
Q 043826           18 LKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      .++++++.+.|+|||++++.+.
T Consensus       107 ~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A          107 PGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             TTHHHHHHHTCCTTCEEEEEEC
T ss_pred             HHHHHHHHHhcCCCCEEEEEee
Confidence            5799999999999999988764

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=94.08  E-value=0.014  Score=41.91  Aligned_cols=35  Identities=6%  Similarity=0.016  Sum_probs=28.5

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELM   40 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~   40 (104)
                      ++++..|.++|  ..+.|+++++.|+|||.+++.|..
T Consensus       292 VisdgsH~~~d--~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          292 VIDDGSHINAH--VRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             EEECSCCCHHH--HHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             EEECCcccchh--HHHHHHHHHHhcCCCeEEEEEecc
Confidence            45566777644  578999999999999999998865

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=93.99  E-value=0.00041  Score=45.71  Aligned_cols=68  Identities=9%  Similarity=-0.001  Sum_probs=39.8

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC
Q 043826           18 LKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI   94 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~   94 (104)
                      ..+++++++.|+|||++.+++.+.....      .  .......... ..+...+.+++.++++++||+.+++....
T Consensus       172 ~~l~~~~~~~LkpgG~l~~~~~~~~~~~------~--~l~~~g~~~~-~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~  239 (254)
T 2h00_A          172 SVNTGGITEIMAEGGELEFVKRIIHDSL------Q--LKKRLRWYSC-MLGKKCSLAPLKEELRIQGVPKVTYTEFC  239 (254)
T ss_dssp             -----CTTTTHHHHTHHHHHHHHHHHHH------H--HGGGBSCEEE-EESSTTSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred             HHHhhhHHHHEecCCEEEEEHHHHHHHH------h--cccceEEEEE-CCCChhHHHHHHHHHHHcCCCceEEEEEe
Confidence            4678899999999999988876543210      0  0000001111 12344456899999999999999877653

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=93.82  E-value=0.34  Score=34.24  Aligned_cols=75  Identities=11%  Similarity=0.107  Sum_probs=43.4

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhh-hh-----hhhhc------------CCCceecCHHHHHHH
Q 043826           18 LKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHF-DV-----LMMIQ------------RPDGKERTRHEFMTL   79 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~-~l-----~m~~~------------~~~g~~rt~~e~~~l   79 (104)
                      ..+|+..++.|+|||++++.=...++. .+.........+ ++     .-|..            ...-..+|.+|++++
T Consensus       205 ~~fL~~ra~eL~pGG~mvl~~~gr~~~-~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~  283 (374)
T 3b5i_A          205 AEFLRARAAEVKRGGAMFLVCLGRTSV-DPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEV  283 (374)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEECCCS-STTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEEEecCCCC-ccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHH
Confidence            457999999999999998776644332 111000000011 11     00110            001234899999999


Q ss_pred             HH-hCCCCceEEEEe
Q 043826           80 AT-GAGFSGMSCERA   93 (104)
Q Consensus        80 l~-~aGf~~~~~~~~   93 (104)
                      ++ ++||++.++...
T Consensus       284 l~~~~~F~I~~le~~  298 (374)
T 3b5i_A          284 VDANGSFAIDKLVVY  298 (374)
T ss_dssp             HHHHCSEEEEEEEEE
T ss_pred             HHhcCCcEEEEEEEE
Confidence            98 599998876543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=93.62  E-value=0.27  Score=30.49  Aligned_cols=32  Identities=9%  Similarity=-0.050  Sum_probs=25.1

Q ss_pred             ccCChHHHHHHHHHHHh--hCCCCCEEEEEeeec
Q 043826           10 HDWNDEHCLKLLKNCYK--SIPEDGKVIVVELML   41 (104)
Q Consensus        10 H~~~d~~~~~iL~~~~~--aL~pgg~l~i~d~~~   41 (104)
                      .++..++..++++++.+  .|+|||++++.....
T Consensus       123 ~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          123 YNVDSADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             CCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            34444667899999999  999999998876543

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=93.52  E-value=0.1  Score=37.56  Aligned_cols=31  Identities=13%  Similarity=0.071  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHhhCCCCCEEEEEeeecCCCC
Q 043826           15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEVP   45 (104)
Q Consensus        15 ~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~   45 (104)
                      ++..+.|+++.+.|+|||++++.|.+.+.+.
T Consensus       336 ~d~~~~L~el~r~LKpGG~lVi~d~f~p~~~  366 (433)
T 1u2z_A          336 EDLNKKVEKILQTAKVGCKIISLKSLRSLTY  366 (433)
T ss_dssp             HHHHHHHHHHHTTCCTTCEEEESSCSSCTTC
T ss_pred             ccHHHHHHHHHHhCCCCeEEEEeeccCCccc
Confidence            4456788999999999999999998876653

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=93.23  E-value=0.21  Score=32.55  Aligned_cols=26  Identities=15%  Similarity=0.281  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826           15 EHCLKLLKNCYKSIPEDGKVIVVELM   40 (104)
Q Consensus        15 ~~~~~iL~~~~~aL~pgg~l~i~d~~   40 (104)
                      +...++++++++.|+|||++++++..
T Consensus       191 ~~~~~~l~~~~~~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          191 QPVAGLLRSLASALPAHAVIAVTDRS  216 (250)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred             cHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence            66789999999999999999986543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=92.83  E-value=0.023  Score=37.85  Aligned_cols=51  Identities=6%  Similarity=0.025  Sum_probs=36.6

Q ss_pred             cCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEE
Q 043826           11 DWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSC   90 (104)
Q Consensus        11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~   90 (104)
                      |+++.  .++|+++.+.|+|||++++......                             ..+++.++++++||+.+++
T Consensus       186 ~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~l~~~Gf~~~~~  234 (275)
T 1yb2_A          186 DIPDP--WNHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLSLSASGMHHLET  234 (275)
T ss_dssp             CCSCG--GGSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHHSGGGTEEEEEE
T ss_pred             cCcCH--HHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHHHHHCCCeEEEE
Confidence            55554  5899999999999999998762110                             1345666777788887776


Q ss_pred             EE
Q 043826           91 ER   92 (104)
Q Consensus        91 ~~   92 (104)
                      ..
T Consensus       235 ~~  236 (275)
T 1yb2_A          235 VE  236 (275)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=92.25  E-value=0.27  Score=32.82  Aligned_cols=50  Identities=4%  Similarity=0.044  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceE
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMS   89 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~   89 (104)
                      ..++++++.+.|+|||++++.+.......           .            ....+++.+.++++||+...
T Consensus       204 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----------~------------~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          204 THEFIPKALSIAKDGAIIHYHNTVPEKLM-----------P------------REPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             GGGGHHHHHHHEEEEEEEEEEEEEEGGGT-----------T------------TTTHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHCCCCeEEEEEEeeccccc-----------c------------ccHHHHHHHHHHHcCCeeEE
Confidence            36889999999999999999887542110           0            12456788999999998776

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=92.23  E-value=0.15  Score=33.38  Aligned_cols=31  Identities=10%  Similarity=0.025  Sum_probs=24.3

Q ss_pred             cCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 043826           11 DWNDEHCLKLLKNCYKSIPEDGKVIVVELML   41 (104)
Q Consensus        11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~   41 (104)
                      +.+.+.....++++.+.|+|||.+++.+...
T Consensus       143 d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~  173 (248)
T 3tfw_A          143 DADKPNNPHYLRWALRYSRPGTLIIGDNVVR  173 (248)
T ss_dssp             CSCGGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred             CCchHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence            4455556789999999999999988766543

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=92.18  E-value=1.2  Score=31.21  Aligned_cols=73  Identities=10%  Similarity=-0.090  Sum_probs=41.3

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecCCCCCCC------cccch-hhhhhhhhhh---------cCCCceecCHHHHHHHHH
Q 043826           18 LKLLKNCYKSIPEDGKVIVVELMLPEVPNTS------IESKS-NFHFDVLMMI---------QRPDGKERTRHEFMTLAT   81 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~------~~~~~-~~~~~l~m~~---------~~~~g~~rt~~e~~~ll~   81 (104)
                      ..+|+..++.|+|||++++.=...+.. .+.      ..... ..+.|+..-.         ....-..+|.+|++++++
T Consensus       189 ~~FL~~Ra~EL~pGG~mvl~~~gr~~~-~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie  267 (359)
T 1m6e_X          189 ALFLRCRAQEVVPGGRMVLTILGRRSE-DRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEIL  267 (359)
T ss_dssp             HHHHHHHHHHBCTTCEEEEEEEECSSS-SSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCceEEEEEecCCCC-CccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHH
Confidence            456999999999999997766544332 110      00000 0111110000         001234578999999999


Q ss_pred             hCCC-CceEEE
Q 043826           82 GAGF-SGMSCE   91 (104)
Q Consensus        82 ~aGf-~~~~~~   91 (104)
                      ++|+ ++.+..
T Consensus       268 ~~G~F~i~~~e  278 (359)
T 1m6e_X          268 KEGSFLIDHIE  278 (359)
T ss_dssp             HTTTBCCEEEE
T ss_pred             HcCCceEEEEE
Confidence            9955 666543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=92.09  E-value=0.13  Score=33.34  Aligned_cols=50  Identities=10%  Similarity=-0.003  Sum_probs=36.1

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEe
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERA   93 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~   93 (104)
                      ...+++.+.+.|+|||++++.+...     .         .+             ..+++.+.++++||+..++...
T Consensus       153 ~~~~l~~~~~~LkpgG~l~~~~g~~-----~---------~~-------------~~~~~~~~l~~~g~~~~~~~~~  202 (240)
T 1xdz_A          153 LSVLSELCLPLVKKNGLFVALKAAS-----A---------EE-------------ELNAGKKAITTLGGELENIHSF  202 (240)
T ss_dssp             HHHHHHHHGGGEEEEEEEEEEECC------C---------HH-------------HHHHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCCEEEEEeCCC-----c---------hH-------------HHHHHHHHHHHcCCeEeEEEEE
Confidence            4789999999999999998863100     0         00             1246778899999998877653

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=91.74  E-value=0.05  Score=36.12  Aligned_cols=26  Identities=19%  Similarity=0.488  Sum_probs=21.2

Q ss_pred             cCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 043826           11 DWNDEHCLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus        11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      +.++.  ..+++++.+.|+|||++++.+
T Consensus       188 ~~~~~--~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          188 DVPDP--WNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             CCSCG--GGTHHHHHHHEEEEEEEEEEE
T ss_pred             CCcCH--HHHHHHHHHHcCCCCEEEEEe
Confidence            55544  588999999999999998876

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=91.69  E-value=0.37  Score=33.03  Aligned_cols=83  Identities=8%  Similarity=-0.070  Sum_probs=51.5

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcC--------CCcee-cC
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQR--------PDGKE-RT   72 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~--------~~g~~-rt   72 (104)
                      +.++-.+||.+++++...+++.+.+.+.||+.+ +.|.+.++.+..  ......... ..+...        ..... ++
T Consensus       182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l-~~d~~~~~~~~~--~~~~~~~~~-~~~~~~g~~~~~~l~~~~~~~~  257 (310)
T 2uyo_A          182 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRI-AVETSPLHGDEW--REQMQLRFR-RVSDALGFEQAVDVQELIYHDE  257 (310)
T ss_dssp             EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEE-EEECCCTTCSHH--HHHHHHHHH-HHHC-----------CCTTCCT
T ss_pred             EEEEechHhhCCHHHHHHHHHHHHHhCCCCeEE-EEEecCCCCcch--hHHHHHHHH-HHHHHcCCcCCCCccccccCCC
Confidence            456778999999999999999999998898877 556554432100  000000000 001000        01122 26


Q ss_pred             -HHHHHHHHHhCCCCce
Q 043826           73 -RHEFMTLATGAGFSGM   88 (104)
Q Consensus        73 -~~e~~~ll~~aGf~~~   88 (104)
                       .++..++|.+.||+.+
T Consensus       258 ~~~~~~~~f~~~G~~~~  274 (310)
T 2uyo_A          258 NRAVVADWLNRHGWRAT  274 (310)
T ss_dssp             TCCCHHHHHTTTTEEEE
T ss_pred             ChHHHHHHHHHCcCccc
Confidence             7899999999999987

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=91.60  E-value=0.2  Score=30.07  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=20.0

Q ss_pred             HHHHHHHHhhCCCCCEEEEEee
Q 043826           18 LKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      .++++++.+.|+|||++++...
T Consensus       116 ~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A          116 ELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEEEEEe
Confidence            6899999999999999998775

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=91.59  E-value=0.28  Score=32.07  Aligned_cols=32  Identities=13%  Similarity=0.242  Sum_probs=24.8

Q ss_pred             cCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826           11 DWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP   42 (104)
Q Consensus        11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~   42 (104)
                      |.+.+.....++++.+.|+|||.+++.+....
T Consensus       143 d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~  174 (242)
T 3r3h_A          143 DADKTNYLNYYELALKLVTPKGLIAIDNIFWD  174 (242)
T ss_dssp             ESCGGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred             cCChHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence            33444567899999999999999988776543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=91.46  E-value=0.081  Score=32.69  Aligned_cols=58  Identities=9%  Similarity=0.111  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEe
Q 043826           15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERA   93 (104)
Q Consensus        15 ~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~   93 (104)
                      ++..+.|+++.+.|+|||++++......+.  ...      ..             ....+|.+.+...+|+..+....
T Consensus       112 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~~~------~~-------------~~~~~~~~~l~~~~~~~~~~~~~  169 (185)
T 3mti_A          112 HTTLEAIEKILDRLEVGGRLAIMIYYGHDG--GDM------EK-------------DAVLEYVIGLDQRVFTAMLYQPL  169 (185)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEC--------CH------HH-------------HHHHHHHHHSCTTTEEEEEEEES
T ss_pred             hhHHHHHHHHHHhcCCCcEEEEEEeCCCCC--CHH------HH-------------HHHHHHHHhCCCceEEEEEehhh
Confidence            456788999999999999999987532211  100      00             11345666666677887776665

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=90.50  E-value=0.37  Score=32.17  Aligned_cols=32  Identities=13%  Similarity=0.076  Sum_probs=25.7

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCC---C--CCEEEEE
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIP---E--DGKVIVV   37 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~---p--gg~l~i~   37 (104)
                      +...++|+.++  ...+++.+.+.|+   |  ||+++++
T Consensus       168 i~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          168 LLADLLSFHQA--HDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             EEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             EEeCcccChHH--HHHHHHHHHHHhcccCCCCCCEEEEE
Confidence            45678887655  4789999999999   9  9998774

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=90.47  E-value=0.093  Score=33.43  Aligned_cols=32  Identities=16%  Similarity=0.179  Sum_probs=25.4

Q ss_pred             cCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826           11 DWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP   42 (104)
Q Consensus        11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~   42 (104)
                      +.+.+....+++++.+.|+|||.+++.+...+
T Consensus       147 ~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  178 (225)
T 3tr6_A          147 DADKANTDLYYEESLKLLREGGLIAVDNVLRR  178 (225)
T ss_dssp             CSCGGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred             CCCHHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            44455568899999999999999998776543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=90.40  E-value=0.2  Score=34.43  Aligned_cols=23  Identities=9%  Similarity=0.218  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEe
Q 043826           16 HCLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus        16 ~~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      +..++++++++.|+|||++++.+
T Consensus       200 d~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          200 PKRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CHHHHHHHHHHHcCCCcEEEEEc
Confidence            35799999999999999999877

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=90.16  E-value=0.63  Score=32.99  Aligned_cols=73  Identities=10%  Similarity=0.044  Sum_probs=40.3

Q ss_pred             HHHHHHhhCCCCCEEEEEeeecCCCC-CCCcccch-hhhhhhhhh---------hcCCCceecCHHHHHHHHHhCC-CCc
Q 043826           20 LLKNCYKSIPEDGKVIVVELMLPEVP-NTSIESKS-NFHFDVLMM---------IQRPDGKERTRHEFMTLATGAG-FSG   87 (104)
Q Consensus        20 iL~~~~~aL~pgg~l~i~d~~~~~~~-~~~~~~~~-~~~~~l~m~---------~~~~~g~~rt~~e~~~ll~~aG-f~~   87 (104)
                      +|+..++.|+|||++++.=...+... .+...... ..+.++.--         .....-..+|.+|++++++++| |++
T Consensus       207 FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i  286 (384)
T 2efj_A          207 FLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEI  286 (384)
T ss_dssp             HHHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEE
T ss_pred             HHHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceE
Confidence            38888999999999987665443220 11100000 111111000         0000123479999999999984 787


Q ss_pred             eEEEE
Q 043826           88 MSCER   92 (104)
Q Consensus        88 ~~~~~   92 (104)
                      .++..
T Consensus       287 ~~le~  291 (384)
T 2efj_A          287 LYLET  291 (384)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=89.76  E-value=0.12  Score=44.40  Aligned_cols=80  Identities=13%  Similarity=0.072  Sum_probs=27.7

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      -+.+++||.-++.  .+.|+++++.|+|||++++.+...+.. .+.    ....++.. -  ..++..-+.++|.++|.+
T Consensus      1315 via~~vl~~t~~~--~~~l~~~~~lL~p~G~l~~~e~~~~~~-~g~----~~~~~~~~-~--r~~~~~~~~~~w~~~l~~ 1384 (2512)
T 2vz8_A         1315 LVCNCALATLGDP--AVAVGNMAATLKEGGFLLLHTLLAGHP-LGE----MVGFLTSP-E--QGGRHLLSQDQWESLFAG 1384 (2512)
T ss_dssp             EEEECC----------------------CCEEEEEEC----------------------------------CTTTTSSTT
T ss_pred             EEEcccccccccH--HHHHHHHHHhcCCCcEEEEEecccccc-ccc----cccccccc-c--ccCCcccCHHHHHHHHHh
Confidence            3567888876554  678999999999999999987532100 000    00000000 0  001223466789999999


Q ss_pred             CCCCceEEEE
Q 043826           83 AGFSGMSCER   92 (104)
Q Consensus        83 aGf~~~~~~~   92 (104)
                      +||..+....
T Consensus      1385 ~gf~~~~~~~ 1394 (2512)
T 2vz8_A         1385 ASLHLVALKR 1394 (2512)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCCceeeecc
Confidence            9999876643

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=89.35  E-value=0.097  Score=33.14  Aligned_cols=30  Identities=10%  Similarity=0.171  Sum_probs=23.3

Q ss_pred             CChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 043826           12 WNDEHCLKLLKNCYKSIPEDGKVIVVELML   41 (104)
Q Consensus        12 ~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~   41 (104)
                      .+.++...+++++.+.|+|||.+++.+...
T Consensus       134 ~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  163 (210)
T 3c3p_A          134 CDVFNGADVLERMNRCLAKNALLIAVNALR  163 (210)
T ss_dssp             TTTSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred             CChhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence            333446789999999999999998766543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=89.17  E-value=0.16  Score=31.46  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=19.7

Q ss_pred             HHHHHHHHhhCCCCCEEEEEee
Q 043826           18 LKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      ..+++++.+.|+|||++++...
T Consensus       125 ~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A          125 LTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHhcCCCEEEEEec
Confidence            5899999999999999998764

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=88.84  E-value=0.4  Score=31.07  Aligned_cols=69  Identities=9%  Similarity=-0.024  Sum_probs=43.8

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe--eecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVE--LMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLA   80 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d--~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll   80 (104)
                      -+.-++||.. ++ ....+.+++++|+|||.++-.+  .+...++.          ++           .+=.+.|++.+
T Consensus       119 VLa~k~LHlL-~~-~~~al~~v~~~L~pggvfISfptksl~Gr~~g----------m~-----------~~Y~~~~~~~~  175 (200)
T 3fzg_A          119 VFLLKMLPVL-KQ-QDVNILDFLQLFHTQNFVISFPIKSLSGKEKG----------ME-----------ENYQLWFESFT  175 (200)
T ss_dssp             EEEETCHHHH-HH-TTCCHHHHHHTCEEEEEEEEEECCCCC--CTT----------CC-----------CCHHHHHHHHT
T ss_pred             hhHhhHHHhh-hh-hHHHHHHHHHHhCCCCEEEEeChHHhcCCCcc----------hh-----------hhHHHHHHHhc
Confidence            4567899999 33 4556669999999999998888  33332221          10           01134667777


Q ss_pred             HhCCCCceEEEEeCC
Q 043826           81 TGAGFSGMSCERAIG   95 (104)
Q Consensus        81 ~~aGf~~~~~~~~~~   95 (104)
                       ...+++++....++
T Consensus       176 -~~~~~~~~~~~~~n  189 (200)
T 3fzg_A          176 -KGWIKILDSKVIGN  189 (200)
T ss_dssp             -TTTSCEEEEEEETT
T ss_pred             -cCcceeeeeeeeCc
Confidence             46667777776654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=88.71  E-value=0.28  Score=30.44  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEeee
Q 043826           16 HCLKLLKNCYKSIPEDGKVIVVELM   40 (104)
Q Consensus        16 ~~~~iL~~~~~aL~pgg~l~i~d~~   40 (104)
                      +..++++++.+.|+|||++++....
T Consensus       117 ~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A          117 TTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            4567999999999999999998754

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=88.65  E-value=0.14  Score=33.08  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=24.5

Q ss_pred             cCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 043826           11 DWNDEHCLKLLKNCYKSIPEDGKVIVVELML   41 (104)
Q Consensus        11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~   41 (104)
                      ++..+.....++++.+.|+|||++++.+...
T Consensus       154 ~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~  184 (239)
T 2hnk_A          154 DADKENYPNYYPLILKLLKPGGLLIADNVLW  184 (239)
T ss_dssp             CSCGGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             eCCHHHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence            4445556789999999999999999876443

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=88.60  E-value=0.19  Score=33.14  Aligned_cols=59  Identities=7%  Similarity=-0.173  Sum_probs=39.0

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeC---
Q 043826           18 LKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAI---   94 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~---   94 (104)
                      ..+++.+.+.|+|||++++.......             -              ..+++.+.++..||+..++.+..   
T Consensus       164 ~~ll~~~~~~LkpgG~l~~~~g~~~~-------------~--------------e~~~~~~~l~~~G~~~~~~~~~~~p~  216 (249)
T 3g89_A          164 CVLSELLLPFLEVGGAAVAMKGPRVE-------------E--------------ELAPLPPALERLGGRLGEVLALQLPL  216 (249)
T ss_dssp             HHHHHHHGGGEEEEEEEEEEECSCCH-------------H--------------HHTTHHHHHHHHTEEEEEEEEEECTT
T ss_pred             HHHHHHHHHHcCCCeEEEEEeCCCcH-------------H--------------HHHHHHHHHHHcCCeEEEEEEeeCCC
Confidence            57999999999999999876521100             0              02256667778899988887652   


Q ss_pred             --CCeEEEEEE
Q 043826           95 --GNLWVMEFY  103 (104)
Q Consensus        95 --~~~~vie~~  103 (104)
                        ....++...
T Consensus       217 ~~~~R~l~~~~  227 (249)
T 3g89_A          217 SGEARHLVVLE  227 (249)
T ss_dssp             TCCEEEEEEEE
T ss_pred             CCCcEEEEEEE
Confidence              234555544

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=88.56  E-value=0.12  Score=35.70  Aligned_cols=32  Identities=13%  Similarity=0.046  Sum_probs=26.5

Q ss_pred             ccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 043826            6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVV   37 (104)
Q Consensus         6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~   37 (104)
                      ..++|++..+.....+.++++.|+|||++++.
T Consensus       123 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          123 EPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             eCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            34678888777788899999999999999854

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=88.55  E-value=0.81  Score=31.15  Aligned_cols=69  Identities=7%  Similarity=-0.082  Sum_probs=46.0

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee--ecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL--MLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~--~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      ++.-++|+..+++....+ ++.++|+|+|.++-.+.  +...++.          ++-+           =.+.|++++.
T Consensus       203 L~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~g----------m~~~-----------Y~~~~e~~~~  260 (281)
T 3lcv_B          203 LLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKG----------MFQN-----------YSQSFESQAR  260 (281)
T ss_dssp             EETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------C----------HHHH-----------HHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcc----------hhhH-----------HHHHHHHHHH
Confidence            455688999888777777 99999999999998887  4332221          2111           1458899999


Q ss_pred             hCCCCceEEEEeCC
Q 043826           82 GAGFSGMSCERAIG   95 (104)
Q Consensus        82 ~aGf~~~~~~~~~~   95 (104)
                      +.|. .++...+++
T Consensus       261 ~~g~-~~~~~~~~n  273 (281)
T 3lcv_B          261 ERSC-RIQRLEIGN  273 (281)
T ss_dssp             HHTC-CEEEEEETT
T ss_pred             hcCC-ceeeeeecC
Confidence            9996 444454544

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=88.37  E-value=0.12  Score=33.78  Aligned_cols=20  Identities=25%  Similarity=0.283  Sum_probs=18.3

Q ss_pred             HHHHHHHHhhCCCCCEEEEE
Q 043826           18 LKLLKNCYKSIPEDGKVIVV   37 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~   37 (104)
                      ..+++++.+.|+|||.+++.
T Consensus       153 ~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          153 NTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEE
Confidence            48999999999999999885

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=88.32  E-value=0.18  Score=33.64  Aligned_cols=36  Identities=14%  Similarity=-0.130  Sum_probs=22.2

Q ss_pred             CceecC---HHHHHHHHHhCCCCceEEEEeCCCeEEEEE
Q 043826           67 DGKERT---RHEFMTLATGAGFSGMSCERAIGNLWVMEF  102 (104)
Q Consensus        67 ~g~~rt---~~e~~~ll~~aGf~~~~~~~~~~~~~vie~  102 (104)
                      +|...|   ...+++-+.+|||++.++...+....++.+
T Consensus       206 GG~l~tysaa~~vrr~L~~aGF~v~~~~g~~~kr~m~~a  244 (257)
T 2qy6_A          206 GGTLATFTSAGFVRRGLQEAGFTMQKRKGFGRKREMLCG  244 (257)
T ss_dssp             EEEEEESCCBHHHHHHHHHHTEEEEEECCSTTCCCEEEE
T ss_pred             CcEEEEEeCCHHHHHHHHHCCCEEEeCCCCCCCCceEEE
Confidence            454433   456888899999998766544433334433

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=87.62  E-value=0.19  Score=32.83  Aligned_cols=21  Identities=19%  Similarity=0.173  Sum_probs=18.5

Q ss_pred             HHHHHHHHhhCCCCCEEEEEe
Q 043826           18 LKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      ..+|+++++.|+|||++++.-
T Consensus       148 ~~~l~~~~~~LkpGG~l~~~t  168 (235)
T 3ckk_A          148 PTLLAEYAYVLRVGGLVYTIT  168 (235)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHCCCCCEEEEEe
Confidence            379999999999999998763

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=87.23  E-value=0.11  Score=33.44  Aligned_cols=29  Identities=3%  Similarity=0.102  Sum_probs=22.9

Q ss_pred             CChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826           12 WNDEHCLKLLKNCYKSIPEDGKVIVVELM   40 (104)
Q Consensus        12 ~~d~~~~~iL~~~~~aL~pgg~l~i~d~~   40 (104)
                      .+.++...+++++.+.|+|||++++.+..
T Consensus       134 ~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  162 (233)
T 2gpy_A          134 AAKGQYRRFFDMYSPMVRPGGLILSDNVL  162 (233)
T ss_dssp             GGGSCHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            33334578999999999999999887644

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=87.17  E-value=0.34  Score=30.11  Aligned_cols=21  Identities=24%  Similarity=0.143  Sum_probs=17.9

Q ss_pred             HHHHHHHHhhCCCCCEEEEEe
Q 043826           18 LKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      .++|+++++.|+|||++++..
T Consensus       134 ~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A          134 LSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHccCCCEEEEEE
Confidence            358999999999999998743

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=87.17  E-value=0.43  Score=33.56  Aligned_cols=31  Identities=10%  Similarity=0.059  Sum_probs=25.2

Q ss_pred             cccc---CChHHHHHHHHHHHhhCCCCCEEEEEe
Q 043826            8 ILHD---WNDEHCLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus         8 vlH~---~~d~~~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      .+|.   ...+...++++++.+.|+|||+++++-
T Consensus       307 p~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~  340 (381)
T 3dmg_A          307 PFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVS  340 (381)
T ss_dssp             CCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            5555   335667899999999999999999874

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=87.10  E-value=0.15  Score=32.97  Aligned_cols=31  Identities=16%  Similarity=0.206  Sum_probs=23.5

Q ss_pred             cCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 043826           11 DWNDEHCLKLLKNCYKSIPEDGKVIVVELML   41 (104)
Q Consensus        11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~   41 (104)
                      +.+.+....+++++.+.|+|||.+++-+...
T Consensus       149 ~~~~~~~~~~l~~~~~~LkpgG~lv~d~~~~  179 (232)
T 3ntv_A          149 DAAKAQSKKFFEIYTPLLKHQGLVITDNVLY  179 (232)
T ss_dssp             ETTSSSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred             cCcHHHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence            3444456789999999999999997755443

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=87.01  E-value=0.48  Score=30.14  Aligned_cols=23  Identities=13%  Similarity=0.351  Sum_probs=18.3

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeec
Q 043826           18 LKLLKNCYKSIPEDGKVIVVELML   41 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~~~   41 (104)
                      .++++.+ +.|+|||.+++.+...
T Consensus       151 ~~~~~~~-~~LkpgG~lv~~~~~~  173 (221)
T 3u81_A          151 TLLLEKC-GLLRKGTVLLADNVIV  173 (221)
T ss_dssp             HHHHHHT-TCCCTTCEEEESCCCC
T ss_pred             HHHHHhc-cccCCCeEEEEeCCCC
Confidence            4678878 9999999998876553

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=86.71  E-value=0.46  Score=31.14  Aligned_cols=27  Identities=11%  Similarity=0.114  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826           14 DEHCLKLLKNCYKSIPEDGKVIVVELM   40 (104)
Q Consensus        14 d~~~~~iL~~~~~aL~pgg~l~i~d~~   40 (104)
                      .+.....++++.+.|+|||.+++.+..
T Consensus       166 ~~~~~~~l~~~~~~LkpGG~lv~d~~~  192 (247)
T 1sui_A          166 KDNYLNYHKRLIDLVKVGGVIGYDNTL  192 (247)
T ss_dssp             STTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred             hHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence            344678999999999999999876644

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=86.67  E-value=0.15  Score=37.07  Aligned_cols=30  Identities=13%  Similarity=0.080  Sum_probs=25.7

Q ss_pred             cccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 043826            7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIV   36 (104)
Q Consensus         7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i   36 (104)
                      .++|++.+++....+.++++.|+|||++++
T Consensus       232 ~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          232 PMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             CCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             CchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            356888888888899999999999999984

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=86.33  E-value=0.14  Score=33.17  Aligned_cols=51  Identities=14%  Similarity=0.089  Sum_probs=36.1

Q ss_pred             cCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEE
Q 043826           11 DWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSC   90 (104)
Q Consensus        11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~   90 (104)
                      ++++.  .++|+++.+.|+|||++++.....+                             ...+..+.++++||+.+++
T Consensus       173 ~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~l~~~gf~~~~~  221 (258)
T 2pwy_A          173 DLMEP--WKVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLELVRAAEAHPFRLERV  221 (258)
T ss_dssp             ESSCG--GGGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHHHHHHTTTTEEEEEE
T ss_pred             CCcCH--HHHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHHHHHHHHCCCceEEE
Confidence            56554  5889999999999999998773110                             1235666677788887766


Q ss_pred             EE
Q 043826           91 ER   92 (104)
Q Consensus        91 ~~   92 (104)
                      ..
T Consensus       222 ~~  223 (258)
T 2pwy_A          222 LE  223 (258)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=86.17  E-value=0.49  Score=32.20  Aligned_cols=23  Identities=13%  Similarity=0.014  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEe
Q 043826           16 HCLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus        16 ~~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      ....+|+.+++.|+|||++++..
T Consensus       149 l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          149 FFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEE
Confidence            35689999999999999999864

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=85.87  E-value=0.57  Score=30.48  Aligned_cols=23  Identities=13%  Similarity=0.293  Sum_probs=20.3

Q ss_pred             HHHHHHHHHh-hCCCCCEEEEEee
Q 043826           17 CLKLLKNCYK-SIPEDGKVIVVEL   39 (104)
Q Consensus        17 ~~~iL~~~~~-aL~pgg~l~i~d~   39 (104)
                      ..++|+++.+ .|+|||++++.|.
T Consensus       165 ~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          165 TFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             HHHHHHHHHHhhCCCCCEEEEEeC
Confidence            4679999997 9999999999875

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=85.83  E-value=0.53  Score=29.99  Aligned_cols=21  Identities=14%  Similarity=0.218  Sum_probs=18.7

Q ss_pred             HHHHHHHHhhCCCCCEEEEEe
Q 043826           18 LKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      ..+|+++++.|+|||++++.-
T Consensus       133 ~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          133 SHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             HHHHHHHHHHHTTSCEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEEe
Confidence            578999999999999998764

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=85.72  E-value=0.7  Score=29.23  Aligned_cols=43  Identities=9%  Similarity=0.179  Sum_probs=32.0

Q ss_pred             HHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEE
Q 043826           20 LLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCE   91 (104)
Q Consensus        20 iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~   91 (104)
                      +++++.+.|+|||++++.....                             .+.++..+++++.|+++.++.
T Consensus       136 ~l~~~~~~LkpgG~lv~~~~~~-----------------------------~~~~~~~~~l~~~g~~i~~i~  178 (204)
T 3njr_A          136 LYDRLWEWLAPGTRIVANAVTL-----------------------------ESETLLTQLHARHGGQLLRID  178 (204)
T ss_dssp             HHHHHHHHSCTTCEEEEEECSH-----------------------------HHHHHHHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHhcCCCcEEEEEecCc-----------------------------ccHHHHHHHHHhCCCcEEEEE
Confidence            9999999999999998754311                             024567778888888877653

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=85.56  E-value=0.39  Score=30.27  Aligned_cols=23  Identities=9%  Similarity=0.329  Sum_probs=19.7

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEee
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      +..+|+.+.+.|+|||++++.-+
T Consensus       118 ~~~~l~~a~~~LkpGG~lv~k~~  140 (191)
T 3dou_A          118 GQRVMEIAVRYLRNGGNVLLKQF  140 (191)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHccCCCEEEEEEc
Confidence            46889999999999999987664

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=85.28  E-value=0.39  Score=32.71  Aligned_cols=23  Identities=13%  Similarity=0.289  Sum_probs=20.4

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeee
Q 043826           18 LKLLKNCYKSIPEDGKVIVVELM   40 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~~   40 (104)
                      .++|+++.+.|+|||++++...-
T Consensus       226 ~~~L~~~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          226 MRLLEKGLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEESC
T ss_pred             HHHHHHHHHhCCCCCEEEEEeCC
Confidence            68999999999999999887653

>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}

Probab=85.28  E-value=0.48  Score=28.86  Aligned_cols=19  Identities=26%  Similarity=0.315  Sum_probs=17.8

Q ss_pred             HHHHHHHHhhCCCCCEEEE
Q 043826           18 LKLLKNCYKSIPEDGKVIV   36 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i   36 (104)
                      +++++.++++|+|||++.-
T Consensus        78 r~li~~l~~aLkpgG~L~g   96 (136)
T 2km1_A           78 KKLISVLADSLKPNGSLIG   96 (136)
T ss_dssp             HHHHHHHHTTCCTTCCEEC
T ss_pred             HHHHHHHHHHhCCCCEEEe
Confidence            7999999999999999976

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=85.25  E-value=0.27  Score=31.34  Aligned_cols=31  Identities=19%  Similarity=0.501  Sum_probs=24.1

Q ss_pred             cCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 043826           11 DWNDEHCLKLLKNCYKSIPEDGKVIVVELML   41 (104)
Q Consensus        11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~   41 (104)
                      |.+......+++++.+.|+|||.+++.+...
T Consensus       152 d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~  182 (229)
T 2avd_A          152 DADKENCSAYYERCLQLLRPGGILAVLRVLW  182 (229)
T ss_dssp             CSCSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence            4444456789999999999999998877543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=85.21  E-value=0.33  Score=31.35  Aligned_cols=31  Identities=6%  Similarity=0.185  Sum_probs=24.4

Q ss_pred             cCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 043826           11 DWNDEHCLKLLKNCYKSIPEDGKVIVVELML   41 (104)
Q Consensus        11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~   41 (104)
                      +.+.++....++++.+.|+|||.+++.+...
T Consensus       155 d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  185 (232)
T 3cbg_A          155 DADKRNYPRYYEIGLNLLRRGGLMVIDNVLW  185 (232)
T ss_dssp             CSCGGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            4444556889999999999999998876544

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=85.07  E-value=0.34  Score=31.46  Aligned_cols=30  Identities=17%  Similarity=0.171  Sum_probs=23.3

Q ss_pred             cCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826           11 DWNDEHCLKLLKNCYKSIPEDGKVIVVELM   40 (104)
Q Consensus        11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~   40 (104)
                      |.+.+....+++++.+.|+|||.+++.+..
T Consensus       154 d~~~~~~~~~l~~~~~~L~pGG~lv~d~~~  183 (237)
T 3c3y_A          154 DADKPNYIKYHERLMKLVKVGGIVAYDNTL  183 (237)
T ss_dssp             CSCGGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred             CCchHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence            444555788999999999999998765543

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=84.97  E-value=0.87  Score=28.71  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=18.5

Q ss_pred             HHHHHHHHhhCCCCCEEEEEe
Q 043826           18 LKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      ..+++++.+.|+|||.+++..
T Consensus       136 ~~~l~~~~~~LkpgG~l~~~~  156 (214)
T 1yzh_A          136 KTFLDTFKRILPENGEIHFKT  156 (214)
T ss_dssp             HHHHHHHHHHSCTTCEEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEEEEe
Confidence            579999999999999998753

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=84.41  E-value=0.6  Score=32.71  Aligned_cols=27  Identities=11%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             CChHHHHHHHHHHHhhCCCCCEEEEEe
Q 043826           12 WNDEHCLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus        12 ~~d~~~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      .++....++++++.+.|+|||+++++.
T Consensus       308 ~~~~~~~~~l~~~~~~LkpgG~l~iv~  334 (375)
T 4dcm_A          308 LTDNVAWEMFHHARRCLKINGELYIVA  334 (375)
T ss_dssp             --CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            445567789999999999999999964

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=84.32  E-value=0.56  Score=30.05  Aligned_cols=22  Identities=23%  Similarity=0.135  Sum_probs=19.5

Q ss_pred             HHHHHHHHhhCCCCCEEEEEee
Q 043826           18 LKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      ..+++++.+.|+|||++++...
T Consensus       170 ~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          170 WHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             GGGHHHHHHHBCTTCEEEEEES
T ss_pred             HHHHHHHHHHcCCCCEEEEEeC
Confidence            5789999999999999998774

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=83.36  E-value=0.41  Score=32.79  Aligned_cols=21  Identities=14%  Similarity=0.109  Sum_probs=17.2

Q ss_pred             HHHHHHHHhhCCCCCEEEEEe
Q 043826           18 LKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      .++++++++.|+|||.+++..
T Consensus       202 ~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          202 QSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             --HHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHhhcCCCeEEEEEC
Confidence            689999999999999998754

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=83.14  E-value=0.35  Score=31.19  Aligned_cols=31  Identities=10%  Similarity=0.265  Sum_probs=23.3

Q ss_pred             cCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 043826           11 DWNDEHCLKLLKNCYKSIPEDGKVIVVELML   41 (104)
Q Consensus        11 ~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~   41 (104)
                      |.+.......++++.+.|+|||.+++-+...
T Consensus       136 d~~~~~~~~~l~~~~~~LkpGG~lv~dn~~~  166 (221)
T 3dr5_A          136 QVSPMDLKALVDAAWPLLRRGGALVLADALL  166 (221)
T ss_dssp             CCCTTTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred             cCcHHHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            3333445779999999999999998866543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=82.78  E-value=0.55  Score=29.50  Aligned_cols=27  Identities=11%  Similarity=0.139  Sum_probs=21.0

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      +...++|+.+        +++.+.|+|||++++.-
T Consensus       151 ~~~~~~~~~~--------~~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          151 YTTAAGPKIP--------EPLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             EESSBBSSCC--------HHHHHTEEEEEEEEEEE
T ss_pred             EECCchHHHH--------HHHHHHcCCCcEEEEEE
Confidence            4556777776        37788999999998875

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=82.55  E-value=0.56  Score=29.37  Aligned_cols=28  Identities=7%  Similarity=0.017  Sum_probs=21.2

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      +...++|+.++        ++.+.|+|||++++.-.
T Consensus       148 ~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~  175 (210)
T 3lbf_A          148 IVTAAPPEIPT--------ALMTQLDEGGILVLPVG  175 (210)
T ss_dssp             EESSBCSSCCT--------HHHHTEEEEEEEEEEEC
T ss_pred             EEccchhhhhH--------HHHHhcccCcEEEEEEc
Confidence            44557777776        47789999999988654

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=82.45  E-value=0.3  Score=32.23  Aligned_cols=23  Identities=4%  Similarity=0.160  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEe
Q 043826           16 HCLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus        16 ~~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      ....+++.+.+.|+|||+++++-
T Consensus       148 ~~~~~l~~~~~~LkpgG~l~~~~  170 (260)
T 2ozv_A          148 LFEDWIRTASAIMVSGGQLSLIS  170 (260)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHcCCCCEEEEEE
Confidence            36789999999999999998853

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=82.20  E-value=0.44  Score=29.72  Aligned_cols=21  Identities=14%  Similarity=0.252  Sum_probs=18.9

Q ss_pred             HHHHHHHHHhhCCCCCEEEEE
Q 043826           17 CLKLLKNCYKSIPEDGKVIVV   37 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~   37 (104)
                      ...+++++.+.|+|||++++.
T Consensus       144 ~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          144 LNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             HHHHHHHHTTSEEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEE
Confidence            368999999999999999887

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=82.02  E-value=1.1  Score=31.22  Aligned_cols=25  Identities=0%  Similarity=-0.152  Sum_probs=21.2

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeeec
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVELML   41 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d~~~   41 (104)
                      ...+|++++++|+|||++++++...
T Consensus       256 ~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          256 IRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             HHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             HHHHHHHHHHHcccCCeEEEEEEec
Confidence            4899999999999999887777653

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=81.67  E-value=0.84  Score=30.27  Aligned_cols=24  Identities=13%  Similarity=0.249  Sum_probs=20.9

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeec
Q 043826           18 LKLLKNCYKSIPEDGKVIVVELML   41 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~d~~~   41 (104)
                      .++|+++.+.|+|||++++.....
T Consensus       191 ~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          191 KELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHhCCCCCEEEEEECCC
Confidence            789999999999999998877543

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=81.64  E-value=0.95  Score=30.79  Aligned_cols=18  Identities=11%  Similarity=0.191  Sum_probs=16.2

Q ss_pred             HHHHHHHhhCCCCCEEEE
Q 043826           19 KLLKNCYKSIPEDGKVIV   36 (104)
Q Consensus        19 ~iL~~~~~aL~pgg~l~i   36 (104)
                      .+|+.+++.|+|||.+++
T Consensus       172 ~~L~~~~~~LkpGG~~v~  189 (305)
T 2p41_A          172 RVLNLVENWLSNNTQFCV  189 (305)
T ss_dssp             HHHHHHHHHCCTTCEEEE
T ss_pred             HHHHHHHHHhCCCCEEEE
Confidence            689999999999998876

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=81.44  E-value=0.71  Score=29.33  Aligned_cols=28  Identities=14%  Similarity=0.072  Sum_probs=21.7

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      +...++|++++        ++.+.|+|||++++...
T Consensus       139 ~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          139 VVWATAPTLLC--------KPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             EESSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred             EECCcHHHHHH--------HHHHHcCCCcEEEEEEc
Confidence            45667887764        57789999999998864

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=81.23  E-value=0.49  Score=30.43  Aligned_cols=20  Identities=5%  Similarity=0.016  Sum_probs=17.9

Q ss_pred             HHHHHHHhhCCCCCEEEEEe
Q 043826           19 KLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus        19 ~iL~~~~~aL~pgg~l~i~d   38 (104)
                      .+++++++.|+|||++++.-
T Consensus       131 ~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          131 PFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             HHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCcEEEEEe
Confidence            59999999999999998764

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=80.63  E-value=3.9  Score=24.40  Aligned_cols=44  Identities=9%  Similarity=0.154  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEE
Q 043826           16 HCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSC   90 (104)
Q Consensus        16 ~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~   90 (104)
                      +...+++++++.  |||++++.+...+                             +..+..++++++||....+
T Consensus       111 ~~~~~l~~~~~~--~gG~l~~~~~~~~-----------------------------~~~~~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A          111 NIEKIIEILDKK--KINHIVANTIVLE-----------------------------NAAKIINEFESRGYNVDAV  154 (183)
T ss_dssp             CHHHHHHHHHHT--TCCEEEEEESCHH-----------------------------HHHHHHHHHHHTTCEEEEE
T ss_pred             cHHHHHHHHhhC--CCCEEEEEecccc-----------------------------cHHHHHHHHHHcCCeEEEE
Confidence            346788888887  9999988773110                             1346788889999776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	104
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	3e-25
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	2e-21
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	6e-20
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	7e-10
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	1e-07

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 92.9 bits (230), Expect = 3e-25
 Identities = 46/98 (46%), Positives = 63/98 (64%), Gaps = 2/98 (2%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           + H+W+DE C++ L NC+K++  +GKVI+VE +LPE PNTS ESK     D LM I    
Sbjct: 148 VCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFIT-VG 206

Query: 68  GKERTRHEFMTLATGAGFSGMSCE-RAIGNLWVMEFYK 104
           G+ERT  ++  L+  +GFS      RA  +L VMEFYK
Sbjct: 207 GRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 244

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 83.0 bits (204), Expect = 2e-21
 Identities = 50/95 (52%), Positives = 66/95 (69%)

Query: 8   ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPD 67
           I HDW+DEHCLK LKNCY+++P++GKVIV E +LP  P++S+ +K   H DV+M+   P 
Sbjct: 148 ICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPG 207

Query: 68  GKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEF 102
           GKERT+ EF  LA GAGF G        N ++MEF
Sbjct: 208 GKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEF 242

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 78.6 bits (193), Expect = 6e-20
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 5/100 (5%)

Query: 7   TILHDWNDEHCLKLLKNCYKSIP---EDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMI 63
            ILH+W D+ CL++LK C +++    + GKV ++++++ +  + +  ++     DV M  
Sbjct: 146 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC 205

Query: 64  QRPDGKERTRHEFMTLATGAGFSGMSCERAIGNLWVMEFY 103
              +GKER   E+  L   AGF         G L ++E Y
Sbjct: 206 L--NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 243

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 51.9 bits (123), Expect = 7e-10
 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 8/99 (8%)

Query: 10  HDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGK 69
            +W+DE  L +L+ C +++   G+++V++           +   +   D+ M+     G+
Sbjct: 158 LNWSDEDALTILRGCVRALEPGGRLLVLDRADV--EGDGADRFFSTLLDLRMLTFMG-GR 214

Query: 70  ERTRHEFMTLATGAGFSGMSCERA-----IGNLWVMEFY 103
            RTR E + LA  AG +  S   +       +  ++EF 
Sbjct: 215 VRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFT 253

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 45.4 bits (106), Expect = 1e-07
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 10  HDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGK 69
            +W D   +++L  C +++   G++++ E       + +   +     D+ M++    G 
Sbjct: 157 LNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN---EQFTELDLRMLV-FLGGA 212

Query: 70  ERTRHEFMTLATGAGFS 86
            RTR ++  LA  AG  
Sbjct: 213 LRTREKWDGLAASAGLV 229

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	104
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.96
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.96
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.95
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.9
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.85
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.18
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.12
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.03
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.93
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.82
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.66
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.64
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.49
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.48
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.38
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.37
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.34
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.27
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.08
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.02
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.01
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	97.99
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	97.82
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	97.71
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	97.61
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.55
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.53
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	97.35
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.16
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	97.12
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	97.07
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	96.98
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.55
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.52
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.46
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	96.23
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	94.37
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	94.3
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	94.17
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	93.58
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	88.17
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	87.98
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	87.04
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	86.81
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	85.94
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	82.49
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	82.49
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	81.94

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.96  E-value=3.7e-30  Score=171.96  Aligned_cols=102  Identities=43%  Similarity=0.721  Sum_probs=91.1

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +|++++|||||+|++|.+||++++++|+|||+++|+|.+.|+++..+...+....+|+.||..+ +|++||.+||.+|++
T Consensus       142 ~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~-~g~ert~~e~~~ll~  220 (244)
T d1fp1d2         142 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQYEKLSK  220 (244)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHHHHHHHHH
T ss_pred             EEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhC-CCcCCCHHHHHHHHH
Confidence            6999999999999999999999999999999999999999887665544444567899988876 899999999999999


Q ss_pred             hCCCCceEEEEe-CCCeEEEEEEC
Q 043826           82 GAGFSGMSCERA-IGNLWVMEFYK  104 (104)
Q Consensus        82 ~aGf~~~~~~~~-~~~~~vie~~~  104 (104)
                      +|||+.+++.+. .+..+|||++|
T Consensus       221 ~AGF~~v~v~~~~~~~~~viE~~K  244 (244)
T d1fp1d2         221 LSGFSKFQVACRAFNSLGVMEFYK  244 (244)
T ss_dssp             HTTCSEEEEEEEETTTEEEEEEEC
T ss_pred             HcCCCceEEEecCCCCEEEEEEeC
Confidence            999999999765 57899999998

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.96  E-value=2.8e-29  Score=167.61  Aligned_cols=101  Identities=30%  Similarity=0.566  Sum_probs=90.0

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCC---CEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPED---GKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMT   78 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pg---g~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~   78 (104)
                      +|++++|||||+|++|.+||+++++||+||   |+++|+|.+.++.+..+........+|++|++ + +|++||.+||++
T Consensus       141 ~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~-~G~ert~~e~~~  218 (244)
T d1fp2a2         141 AVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEWKK  218 (244)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHHHH
T ss_pred             EEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-C-CCcCCCHHHHHH
Confidence            799999999999999999999999999998   89999999998776554433334567888875 3 899999999999


Q ss_pred             HHHhCCCCceEEEEeCCCeEEEEEEC
Q 043826           79 LATGAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        79 ll~~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      |+++|||+.+++++.++..+|||++|
T Consensus       219 ll~~AGf~~~~i~~~~~~~svIE~~p  244 (244)
T d1fp2a2         219 LFIEAGFQHYKISPLTGFLSLIEIYP  244 (244)
T ss_dssp             HHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             HHHHcCCceEEEEECCCCeEEEEEeC
Confidence            99999999999999999999999997

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.95  E-value=8.9e-28  Score=160.07  Aligned_cols=102  Identities=49%  Similarity=0.896  Sum_probs=90.2

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +|++++++|+|+|++|.++|+++++||+|||+++|+|.+.++....+........+|+.||.++.+|++||.+||++|++
T Consensus       142 ~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~  221 (243)
T d1kyza2         142 AVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAK  221 (243)
T ss_dssp             CEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHH
T ss_pred             eEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHH
Confidence            58999999999999999999999999999999999999987766544333334568999988776899999999999999


Q ss_pred             hCCCCceEEEEeCCCeEEEEEE
Q 043826           82 GAGFSGMSCERAIGNLWVMEFY  103 (104)
Q Consensus        82 ~aGf~~~~~~~~~~~~~vie~~  103 (104)
                      +|||+.+++++..+..+|||..
T Consensus       222 ~AGf~~vkv~~~~~~~~viE~~  243 (243)
T d1kyza2         222 GAGFQGFKVHCNAFNTYIMEFL  243 (243)
T ss_dssp             HHCCSCEEEEEEETTEEEEEEC
T ss_pred             HcCCCcEEEEEeCCCCEEEEeC
Confidence            9999999999998999999963

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.90  E-value=2e-24  Score=144.51  Aligned_cols=100  Identities=24%  Similarity=0.395  Sum_probs=82.6

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +|+++++||+|+|+++.++|++++++|+|||+++|+|.+.+++....  ......+|+.|+... +|++||.+||++|++
T Consensus       150 ~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~--~~~~~~~d~~ml~~~-~g~~rt~~e~~~ll~  226 (256)
T d1qzza2         150 VVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD--RFFSTLLDLRMLTFM-GGRVRTRDEVVDLAG  226 (256)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHHHH-SCCCCCHHHHHHHHH
T ss_pred             hhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCccc--HHHHHHHHHHHHhhC-CCccCCHHHHHHHHH
Confidence            68999999999999999999999999999999999998765443222  123456899999876 899999999999999


Q ss_pred             hCCCCceEEEEeCC-----CeEEEEEEC
Q 043826           82 GAGFSGMSCERAIG-----NLWVMEFYK  104 (104)
Q Consensus        82 ~aGf~~~~~~~~~~-----~~~vie~~~  104 (104)
                      +|||+.+++.+.++     .++|+|+.+
T Consensus       227 ~AGf~~~~~~~~~~~~~~~~~~v~E~~~  254 (256)
T d1qzza2         227 SAGLALASERTSGSTTLPFDFSILEFTA  254 (256)
T ss_dssp             TTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             HCCCceeEEEEeCCcCccCceEEEEEEe
Confidence            99999999998753     579999863

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.85  E-value=5.3e-22  Score=132.16  Aligned_cols=99  Identities=18%  Similarity=0.283  Sum_probs=82.3

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +|+++++||+|+|+++.++|++++++|+|||+++|.|...++....+.   ....+|+.|+..+ +|++||.+||+++++
T Consensus       149 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~---~~~~~dl~~~~~~-~g~~rt~~e~~~ll~  224 (253)
T d1tw3a2         149 AIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNE---QFTELDLRMLVFL-GGALRTREKWDGLAA  224 (253)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSH---HHHHHHHHHHHHH-SCCCCBHHHHHHHHH
T ss_pred             heeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchh---HHHHhhHHHHhhC-CCcCCCHHHHHHHHH
Confidence            588999999999999999999999999999999999987655443322   2356889988876 899999999999999


Q ss_pred             hCCCCceEEEEeCC-----CeEEEEEEC
Q 043826           82 GAGFSGMSCERAIG-----NLWVMEFYK  104 (104)
Q Consensus        82 ~aGf~~~~~~~~~~-----~~~vie~~~  104 (104)
                      +|||+++++..+++     ..++++..|
T Consensus       225 ~AGf~~~~v~~~~~p~~~~~~~li~~~P  252 (253)
T d1tw3a2         225 SAGLVVEEVRQLPSPTIPYDLSLLVLAP  252 (253)
T ss_dssp             HTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             HCCCeEEEEEECCCCCCCccEEEEEEec
Confidence            99999999887642     356776653

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.18  E-value=5.9e-11  Score=76.54  Aligned_cols=100  Identities=15%  Similarity=0.041  Sum_probs=66.9

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCC-------------Ccee
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRP-------------DGKE   70 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~-------------~g~~   70 (104)
                      ++..++|++++++..++|++++++|+|||.+++.|...+..+..... ...............             .-..
T Consensus       113 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (225)
T d1im8a_         113 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL-LIDLHHQFKRANGYSELEVSQKRTALENVMRT  191 (225)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCC
T ss_pred             EEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhH-HHHHHHHHHHHcCCCHHHHHHHHHHhhcccCC
Confidence            56779999998889999999999999999999999887655321100 000001100000000             0123


Q ss_pred             cCHHHHHHHHHhCCCCceEEEEeCCCeEEEEEEC
Q 043826           71 RTRHEFMTLATGAGFSGMSCERAIGNLWVMEFYK  104 (104)
Q Consensus        71 rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  104 (104)
                      .|.+++.++|++|||+.+++..-...+..+-++|
T Consensus       192 ~s~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k  225 (225)
T d1im8a_         192 DSIETHKVRLKNVGFSQVELWFQCFNFGSMIAVK  225 (225)
T ss_dssp             CCHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             CCHHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence            6889999999999999998875444566666665

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.12  E-value=9.6e-11  Score=77.27  Aligned_cols=77  Identities=13%  Similarity=0.108  Sum_probs=60.8

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      -++.+++|+++|++..++|++|+++|+|||.++|.|.+......         ..|.     ..++..||.++|+++|++
T Consensus       162 I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~---------~~d~-----~d~~~~rs~~~~~~l~~~  227 (254)
T d1xtpa_         162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK-----EDSSLTRSDIHYKRLFNE  227 (254)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET-----TTTEEEBCHHHHHHHHHH
T ss_pred             EEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc---------eecc-----cCCceeCCHHHHHHHHHH
Confidence            35678999999999999999999999999999999987543311         1221     135667999999999999


Q ss_pred             CCCCceEEEEe
Q 043826           83 AGFSGMSCERA   93 (104)
Q Consensus        83 aGf~~~~~~~~   93 (104)
                      |||++++...-
T Consensus       228 aGf~ii~~~~q  238 (254)
T d1xtpa_         228 SGVRVVKEAFQ  238 (254)
T ss_dssp             HTCCEEEEEEC
T ss_pred             cCCEEEEEEee
Confidence            99999887653

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.9e-10  Score=73.13  Aligned_cols=76  Identities=20%  Similarity=0.249  Sum_probs=61.5

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|++++++..++|+++++.|+|||.+++.|...++..          .++-     ..+...|+.++|.++|++
T Consensus       131 I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~----------~~~~-----~~~~~~~~~~~~~~l~~~  195 (222)
T d2ex4a1         131 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV----------ILDD-----VDSSVCRDLDVVRRIICS  195 (222)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE----------EEET-----TTTEEEEBHHHHHHHHHH
T ss_pred             cccccccccchhhhhhhHHHHHHHhcCCcceEEEEEccccccc----------cccc-----CCceeeCCHHHHHHHHHH
Confidence            4567899999999999999999999999999999998765431          1111     125567899999999999


Q ss_pred             CCCCceEEEEe
Q 043826           83 AGFSGMSCERA   93 (104)
Q Consensus        83 aGf~~~~~~~~   93 (104)
                      +||++++....
T Consensus       196 aGf~ii~~~~q  206 (222)
T d2ex4a1         196 AGLSLLAEERQ  206 (222)
T ss_dssp             TTCCEEEEEEC
T ss_pred             cCCEEEEEEEe
Confidence            99999987764

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.93  E-value=6e-10  Score=71.45  Aligned_cols=82  Identities=12%  Similarity=0.248  Sum_probs=58.5

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhh-hhhhhcCCCceecCHHHHHHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFD-VLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~-l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      .+...++|+++|.  .++|+++++.|+|||++++.+...++...   ..   ...+ ..-.....+.+.++.++|.++++
T Consensus        85 v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~  156 (231)
T d1vl5a_          85 VTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPENDA---FD---VFYNYVEKERDYSHHRAWKKSDWLKMLE  156 (231)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSHH---HH---HHHHHHHHHHCTTCCCCCBHHHHHHHHH
T ss_pred             ccccccccccCCH--HHHHHHHHHhcCCCcEEEEEeCCCCCCHH---HH---HHHHHHHhhcccCcccCCCHHHHHHHHH
Confidence            4567899999886  68899999999999999999987654321   11   1111 11111122456678999999999


Q ss_pred             hCCCCceEEEE
Q 043826           82 GAGFSGMSCER   92 (104)
Q Consensus        82 ~aGf~~~~~~~   92 (104)
                      ++||+++++..
T Consensus       157 ~aGf~~~~~~~  167 (231)
T d1vl5a_         157 EAGFELEELHC  167 (231)
T ss_dssp             HHTCEEEEEEE
T ss_pred             HCCCEEEEEEE
Confidence            99999887654

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=3.8e-09  Score=66.79  Aligned_cols=82  Identities=17%  Similarity=0.205  Sum_probs=56.9

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .++..+||+++|.  .++|+++++.|+|||++++.+...+..     .... ...+........+...+|.+++.++|++
T Consensus        95 I~~~~~l~h~~d~--~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~s~~~l~~~l~~  166 (208)
T d1vlma_          95 ALMVTTICFVDDP--ERALKEAYRILKKGGYLIVGIVDRESF-----LGRE-YEKNKEKSVFYKNARFFSTEELMDLMRK  166 (208)
T ss_dssp             EEEESCGGGSSCH--HHHHHHHHHHEEEEEEEEEEEECSSSH-----HHHH-HHHTTTC-CCSTTCCCCCHHHHHHHHHH
T ss_pred             ccccccccccccc--ccchhhhhhcCCCCceEEEEecCCcch-----hHHh-hhhccccccccccccCCCHHHHHHHHHH
Confidence            3567899999875  689999999999999999988643211     1100 0011111111234566899999999999


Q ss_pred             CCCCceEEEE
Q 043826           83 AGFSGMSCER   92 (104)
Q Consensus        83 aGf~~~~~~~   92 (104)
                      +||+.+++..
T Consensus       167 ~Gf~~i~v~~  176 (208)
T d1vlma_         167 AGFEEFKVVQ  176 (208)
T ss_dssp             TTCEEEEEEE
T ss_pred             cCCeEEEEEE
Confidence            9999998776

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.66  E-value=2.9e-08  Score=65.56  Aligned_cols=81  Identities=14%  Similarity=0.142  Sum_probs=58.0

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      .+...++|+++|.  .++|++++++|+|||++++.+....+.......   ....+...     .....|.++|.+++++
T Consensus       139 V~~~~~l~h~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~s~~~~~~~l~~  208 (282)
T d2o57a1         139 IWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKSSI---QPILDRIK-----LHDMGSLGLYRSLAKE  208 (282)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGG---HHHHHHHT-----CSSCCCHHHHHHHHHH
T ss_pred             hhccchhhhccCH--HHHHHHHHHhcCCCcEEEEEEeecCCCCchhHH---HHHHHHhc-----cCCCCCHHHHHHHHHH
Confidence            3466799999886  689999999999999999999887654322111   11122111     1223588999999999


Q ss_pred             CCCCceEEEEe
Q 043826           83 AGFSGMSCERA   93 (104)
Q Consensus        83 aGf~~~~~~~~   93 (104)
                      +||+.+++...
T Consensus       209 ~Gf~~i~~~d~  219 (282)
T d2o57a1         209 CGLVTLRTFSR  219 (282)
T ss_dssp             TTEEEEEEEEC
T ss_pred             cCCceEEEEEC
Confidence            99998887754

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.64  E-value=1.6e-08  Score=65.04  Aligned_cols=82  Identities=13%  Similarity=0.262  Sum_probs=58.6

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhh-hhhhhcCCCceecCHHHHHHHHH
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFD-VLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~-l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      ++...++|+++|.  .++|+++++.|+|||++++.+...++.+   ....   .++ +.........+.++..+|.++++
T Consensus        86 v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (234)
T d1xxla_          86 ITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDP---VLDE---FVNHLNRLRDPSHVRESSLSEWQAMFS  157 (234)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSH---HHHH---HHHHHHHHHCTTCCCCCBHHHHHHHHH
T ss_pred             eeeeceeecccCH--HHHHHHHHHeeCCCcEEEEEEcCCCCCH---HHHH---HHHHHHhhCCCcccccCCHHHHHHHHH
Confidence            5667899999885  7999999999999999999998765432   1111   111 11111112566789999999999


Q ss_pred             hCCCCceEEEE
Q 043826           82 GAGFSGMSCER   92 (104)
Q Consensus        82 ~aGf~~~~~~~   92 (104)
                      ++||....+..
T Consensus       158 ~~gf~~~~~~~  168 (234)
T d1xxla_         158 ANQLAYQDIQK  168 (234)
T ss_dssp             HTTEEEEEEEE
T ss_pred             HCCCceeEEEE
Confidence            99998776654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.49  E-value=2.4e-07  Score=61.55  Aligned_cols=90  Identities=13%  Similarity=0.224  Sum_probs=63.1

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCC----cc-cchhhhhhhhhhhcCCCceecCHHHHHH
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTS----IE-SKSNFHFDVLMMIQRPDGKERTRHEFMT   78 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~----~~-~~~~~~~~l~m~~~~~~g~~rt~~e~~~   78 (104)
                      +...++++++++.-..+++++++.|+|||+++|.+.+..+.....    .. .......+...--.+++|...|.+++.+
T Consensus       122 ~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l~~  201 (280)
T d2fk8a1         122 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVE  201 (280)
T ss_dssp             EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHH
T ss_pred             hHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHhhhh
Confidence            455688999988888999999999999999999986654321100    00 0001112222212356888899999999


Q ss_pred             HHHhCCCCceEEEEe
Q 043826           79 LATGAGFSGMSCERA   93 (104)
Q Consensus        79 ll~~aGf~~~~~~~~   93 (104)
                      .++++||++..+...
T Consensus       202 ~~e~aGf~v~~~~~~  216 (280)
T d2fk8a1         202 HGEKAGFTVPEPLSL  216 (280)
T ss_dssp             HHHHTTCBCCCCEEC
T ss_pred             hHHhhccccceeeec
Confidence            999999999987764

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=8.6e-08  Score=61.97  Aligned_cols=76  Identities=12%  Similarity=-0.076  Sum_probs=53.6

Q ss_pred             EeccccccCCh--HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            4 CTLTILHDWND--EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         4 ~~~~vlH~~~d--~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +...++|+.+.  ++...+++++++.|+|||++++.+.......     ..    .+..     ......|.++++++|+
T Consensus       157 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~-----~~----~~~~-----~~~~~~~~~~~~~~l~  222 (257)
T d2a14a1         157 LTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSY-----MV----GKRE-----FSCVALEKGEVEQAVL  222 (257)
T ss_dssp             EEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE-----EE----TTEE-----EECCCCCHHHHHHHHH
T ss_pred             eehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccc-----ee----cccc-----ccccCCCHHHHHHHHH
Confidence            45678888763  4678999999999999999999886432210     00    0000     0122358999999999


Q ss_pred             hCCCCceEEEEe
Q 043826           82 GAGFSGMSCERA   93 (104)
Q Consensus        82 ~aGf~~~~~~~~   93 (104)
                      +|||+++++...
T Consensus       223 ~aGf~v~~~~~~  234 (257)
T d2a14a1         223 DAGFDIEQLLHS  234 (257)
T ss_dssp             HTTEEEEEEEEE
T ss_pred             HCCCEEEEEEEe
Confidence            999999887654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.2e-07  Score=62.19  Aligned_cols=75  Identities=7%  Similarity=0.010  Sum_probs=52.8

Q ss_pred             EeccccccCCh--HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            4 CTLTILHDWND--EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         4 ~~~~vlH~~~d--~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      +..++||+.+.  ++-.++|+++++.|+|||.+++.+........          ......    .....|.++++++|+
T Consensus       162 ~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~----------~~~~~~----~~~~~t~e~v~~~l~  227 (263)
T d2g72a1         162 VSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYL----------AGEARL----TVVPVSEEEVREALV  227 (263)
T ss_dssp             EEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEE----------ETTEEE----ECCCCCHHHHHHHHH
T ss_pred             eeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccc----------cCCccc----ccCCCCHHHHHHHHH
Confidence            56778888762  45789999999999999999999875432100          000000    112358999999999


Q ss_pred             hCCCCceEEEE
Q 043826           82 GAGFSGMSCER   92 (104)
Q Consensus        82 ~aGf~~~~~~~   92 (104)
                      ++||+++++..
T Consensus       228 ~aGf~v~~~~~  238 (263)
T d2g72a1         228 RSGYKVRDLRT  238 (263)
T ss_dssp             HTTEEEEEEEE
T ss_pred             HCCCeEEEEEE
Confidence            99999886554

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.37  E-value=2.1e-06  Score=57.07  Aligned_cols=87  Identities=10%  Similarity=0.140  Sum_probs=58.8

Q ss_pred             cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-----CCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHH
Q 043826            7 TILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVP-----NTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLAT   81 (104)
Q Consensus         7 ~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~-----~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~   81 (104)
                      .++.+..+..-..+++++++.|+|||++++.+.....++     ..+.........+...--.+++|...|..++.++++
T Consensus       135 ~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e  214 (285)
T d1kpga_         135 GAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECAS  214 (285)
T ss_dssp             SCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHH
T ss_pred             hhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHHHHH
Confidence            455666666567899999999999999999997643321     111100111112221112356888899999999999


Q ss_pred             hCCCCceEEEEe
Q 043826           82 GAGFSGMSCERA   93 (104)
Q Consensus        82 ~aGf~~~~~~~~   93 (104)
                      ++||++.++...
T Consensus       215 ~agf~v~~~~~~  226 (285)
T d1kpga_         215 ANGFTVTRVQSL  226 (285)
T ss_dssp             TTTCEEEEEEEC
T ss_pred             Hhchhhcccccc
Confidence            999999988765

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=3.2e-07  Score=59.22  Aligned_cols=80  Identities=11%  Similarity=-0.017  Sum_probs=56.4

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhC
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGA   83 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~a   83 (104)
                      +...++|+++|.  .++|+++++.|+|||++++.+......+.....   ......     .......+..++.++++++
T Consensus       105 ~~~~~~~~~~d~--~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~a  174 (245)
T d1nkva_         105 ACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATEEI---AQACGV-----SSTSDFLTLPGLVGAFDDL  174 (245)
T ss_dssp             EEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHH---HHTTTC-----SCGGGSCCHHHHHHHHHTT
T ss_pred             EEEehhhccCCH--HHHHHHHHHHcCcCcEEEEEeccccCCCChHHH---HHHhcc-----CCCcccCCHHHHHHHHHHc
Confidence            456789999876  689999999999999999999875544322111   011110     1123456899999999999


Q ss_pred             CCCceEEEEe
Q 043826           84 GFSGMSCERA   93 (104)
Q Consensus        84 Gf~~~~~~~~   93 (104)
                      ||+.+.....
T Consensus       175 G~~~v~~~~~  184 (245)
T d1nkva_         175 GYDVVEMVLA  184 (245)
T ss_dssp             TBCCCEEEEC
T ss_pred             CCEEEEEEeC
Confidence            9998876543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.27  E-value=3.4e-07  Score=60.56  Aligned_cols=88  Identities=16%  Similarity=0.175  Sum_probs=52.0

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC--------CCCCCCcccchhhhhhh-hhhhcCCCcee-cC
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP--------EVPNTSIESKSNFHFDV-LMMIQRPDGKE-RT   72 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~--------~~~~~~~~~~~~~~~~l-~m~~~~~~g~~-rt   72 (104)
                      .+..+++|+++|.  .++|+++++.|+|||++++.|....        +....+..........+ ...... +|.. .-
T Consensus        98 v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i  174 (281)
T d2gh1a1          98 AICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQR-NGKDGNI  174 (281)
T ss_dssp             EEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHT-TCCCTTG
T ss_pred             EEEehhhhcCCCH--HHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHH-cCCCCCH
Confidence            4567899999987  5899999999999999999985311        00000000000011110 111111 2222 22


Q ss_pred             HHHHHHHHHhCCCCceEEEEe
Q 043826           73 RHEFMTLATGAGFSGMSCERA   93 (104)
Q Consensus        73 ~~e~~~ll~~aGf~~~~~~~~   93 (104)
                      ..++..|+++|||+.+++.-.
T Consensus       175 ~~~l~~~l~eaGf~~i~~~~~  195 (281)
T d2gh1a1         175 GMKIPIYLSELGVKNIECRVS  195 (281)
T ss_dssp             GGTHHHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHHHHHcCCeEEEEEEe
Confidence            246788999999999876543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.08  E-value=5.1e-06  Score=53.58  Aligned_cols=75  Identities=11%  Similarity=-0.048  Sum_probs=52.5

Q ss_pred             ccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCC
Q 043826            6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGF   85 (104)
Q Consensus         6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf   85 (104)
                      .+.+|++++  ...+++++++.|+|||++++.+.....+...+..                    ...+++.+.|+++||
T Consensus       148 ~~~~~~~~~--~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~--------------------~~~~e~~~~L~~aGF  205 (230)
T d1g8sa_         148 YEDVAQPNQ--AEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPK--------------------EIFKEQKEILEAGGF  205 (230)
T ss_dssp             EECCCSTTH--HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHH--------------------HHHHHHHHHHHHHTE
T ss_pred             eccccchHH--HHHHHHHHHHhcccCceEEEEeeccccCCCCCHH--------------------HHHHHHHHHHHHcCC
Confidence            345555543  5788999999999999999988654433222110                    123578899999999


Q ss_pred             CceEEEEeCC---CeEEEEE
Q 043826           86 SGMSCERAIG---NLWVMEF  102 (104)
Q Consensus        86 ~~~~~~~~~~---~~~vie~  102 (104)
                      ++++...+.+   .+.++.+
T Consensus       206 ~ive~idL~py~~~H~~vvg  225 (230)
T d1g8sa_         206 KIVDEVDIEPFEKDHVMFVG  225 (230)
T ss_dssp             EEEEEEECTTTSTTEEEEEE
T ss_pred             EEEEEecCCCCcCCeEEEEE
Confidence            9999988864   3555544

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.02  E-value=1.7e-05  Score=52.75  Aligned_cols=86  Identities=14%  Similarity=0.279  Sum_probs=58.9

Q ss_pred             cccccCChH-------HHHHHHHHHHhhCCCCCEEEEEeeecCCCCC-------CCcccchhhhhhhhhhhcCCCceecC
Q 043826            7 TILHDWNDE-------HCLKLLKNCYKSIPEDGKVIVVELMLPEVPN-------TSIESKSNFHFDVLMMIQRPDGKERT   72 (104)
Q Consensus         7 ~vlH~~~d~-------~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~-------~~~~~~~~~~~~l~m~~~~~~g~~rt   72 (104)
                      .++.|.+|.       .-..++++|++.|+|||++++.....++...       .|.  ......+...--.+++|...|
T Consensus       134 e~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~--~~~~~~~fi~kyiFpgg~lps  211 (291)
T d1kpia_         134 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPM--SLLRFIKFILTEIFPGGRLPR  211 (291)
T ss_dssp             SCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCH--HHHHHHHHHHHHTCTTCCCCC
T ss_pred             hhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCch--hhcccchHHHHHhcCCCCCCC
Confidence            355566652       3478999999999999999999987654321       110  001112221111356888999


Q ss_pred             HHHHHHHHHhCCCCceEEEEeC
Q 043826           73 RHEFMTLATGAGFSGMSCERAI   94 (104)
Q Consensus        73 ~~e~~~ll~~aGf~~~~~~~~~   94 (104)
                      ..++...++++||++..+...+
T Consensus       212 ~~~~~~~~e~~gl~v~~~~~~~  233 (291)
T d1kpia_         212 ISQVDYYSSNAGWKVERYHRIG  233 (291)
T ss_dssp             HHHHHHHHHHHTCEEEEEEECG
T ss_pred             HHHHHhhhcccccccceeeecc
Confidence            9999999999999999887664

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.01  E-value=9.6e-06  Score=51.49  Aligned_cols=82  Identities=17%  Similarity=0.102  Sum_probs=52.9

Q ss_pred             EeccccccCChHHHHHHHHHHH-hhCCCCCEEEEEeeecCCCC--------CCCcccchhhhhhhhhhhcCCCceecCHH
Q 043826            4 CTLTILHDWNDEHCLKLLKNCY-KSIPEDGKVIVVELMLPEVP--------NTSIESKSNFHFDVLMMIQRPDGKERTRH   74 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~-~aL~pgg~l~i~d~~~~~~~--------~~~~~~~~~~~~~l~m~~~~~~g~~rt~~   74 (104)
                      ++..+||+.+|+  .++|++++ +.|+|||++++.-+....-.        ....... ....+.    ..++-+.++.+
T Consensus        86 ~~~~vleh~~d~--~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~h~~~~~~~  158 (225)
T d2p7ia1          86 VLTHVLEHIDDP--VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSA-VTEAEF----AHGHRCTYALD  158 (225)
T ss_dssp             EEESCGGGCSSH--HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTC-CCHHHH----HTTCCCCCCHH
T ss_pred             cccceeEecCCH--HHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhh-cCcccc----ceeeeeccCHH
Confidence            567899999886  68899998 67999999998643211100        0000000 000111    12345678999


Q ss_pred             HHHHHHHhCCCCceEEEE
Q 043826           75 EFMTLATGAGFSGMSCER   92 (104)
Q Consensus        75 e~~~ll~~aGf~~~~~~~   92 (104)
                      +++.+++++||++++...
T Consensus       159 ~l~~~l~~~Gf~i~~~~~  176 (225)
T d2p7ia1         159 TLERDASRAGLQVTYRSG  176 (225)
T ss_dssp             HHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHCCCEEEEEEE
Confidence            999999999999887654

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.1e-05  Score=52.70  Aligned_cols=79  Identities=11%  Similarity=-0.003  Sum_probs=52.1

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHh
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATG   82 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~   82 (104)
                      -+..+++|+++|.  .+.|+++++.|+|||.++|...-.+    .. ..+. ................++.+++.++|++
T Consensus       127 I~~~~~l~~~~d~--~~~l~~l~~~LkpgG~l~i~~~~~~----~~-~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~L~~  198 (280)
T d1jqea_         127 IHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGS----SG-WDKL-WKKYGSRFPQDDLCQYITSDDLTQMLDN  198 (280)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTT----SH-HHHH-HHHHGGGSCCCTTSCCCCHHHHHHHHHH
T ss_pred             EEEccceecCCCH--HHHHHHHHhhCCCCCEEEEEEecCc----ch-HHHH-HHHHHHhcCCCcccccCCHHHHHHHHHH
Confidence            3667899999886  6899999999999999998764211    11 1110 0000111111123556789999999999


Q ss_pred             CCCCceE
Q 043826           83 AGFSGMS   89 (104)
Q Consensus        83 aGf~~~~   89 (104)
                      +||+..+
T Consensus       199 ~G~~~~~  205 (280)
T d1jqea_         199 LGLKYEC  205 (280)
T ss_dssp             HTCCEEE
T ss_pred             CCCceEE
Confidence            9998654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.82  E-value=5.2e-06  Score=53.23  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=27.9

Q ss_pred             EEEeccccccCC-hHHHHHHHHHHHhhCCCCCEEEE
Q 043826            2 INCTLTILHDWN-DEHCLKLLKNCYKSIPEDGKVIV   36 (104)
Q Consensus         2 ~y~~~~vlH~~~-d~~~~~iL~~~~~aL~pgg~l~i   36 (104)
                      ++++.+++|++. .++..++|+++++.|+|||.+++
T Consensus       105 i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         105 ITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             EEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             cceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            445557777775 55688999999999999998875

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.71  E-value=1.2e-05  Score=50.23  Aligned_cols=38  Identities=11%  Similarity=0.101  Sum_probs=33.2

Q ss_pred             EEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826            3 NCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELM   40 (104)
Q Consensus         3 y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~   40 (104)
                      -+..+++|++++++..++|+++.+.|+|||++++....
T Consensus       106 I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         106 VIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            35568999999888899999999999999999887754

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.61  E-value=4.2e-05  Score=47.43  Aligned_cols=38  Identities=13%  Similarity=0.134  Sum_probs=33.6

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELML   41 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~   41 (104)
                      +...++|+.++++..++|++++++|+|||++++.....
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  137 (198)
T d2i6ga1         100 LSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD  137 (198)
T ss_dssp             EEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             EEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            35679999999999999999999999999999987653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.55  E-value=0.00015  Score=43.99  Aligned_cols=39  Identities=5%  Similarity=0.067  Sum_probs=33.6

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLP   42 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~   42 (104)
                      +.+.++|+.++++....++++++.|+|||++++.....+
T Consensus       104 ~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~  142 (201)
T d1pjza_         104 YDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD  142 (201)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred             EEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccc
Confidence            346799999999999999999999999999988776543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.53  E-value=2.3e-05  Score=48.97  Aligned_cols=37  Identities=8%  Similarity=0.107  Sum_probs=33.1

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      +-+.+|||+.++++...++|++++++|+|||.|++-.
T Consensus       135 vI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~  171 (193)
T d1af7a2         135 AIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  171 (193)
T ss_dssp             EEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             EEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            3578899999999999999999999999999887654

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00031  Score=44.37  Aligned_cols=67  Identities=10%  Similarity=-0.054  Sum_probs=49.0

Q ss_pred             eccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCC-CCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhC
Q 043826            5 TLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPN-TSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGA   83 (104)
Q Consensus         5 ~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~-~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~a   83 (104)
                      -+.++|+.++++....+++++++|+|||++++.....++... +|+       +            ..|.+|+++++.. 
T Consensus       135 ~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp-------~------------~~~~~el~~lf~~-  194 (229)
T d2bzga1         135 DRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPP-------F------------YVPHAEIERLFGK-  194 (229)
T ss_dssp             ESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSS-------C------------CCCHHHHHHHHTT-
T ss_pred             EEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCC-------C------------CCCHHHHHHHhcC-
Confidence            467899999999999999999999999999888776543321 111       1            1368899999963 


Q ss_pred             CCCceEEE
Q 043826           84 GFSGMSCE   91 (104)
Q Consensus        84 Gf~~~~~~   91 (104)
                      +|.+..+.
T Consensus       195 ~~~i~~le  202 (229)
T d2bzga1         195 ICNIRCLE  202 (229)
T ss_dssp             TEEEEEEE
T ss_pred             CCEEEEEE
Confidence            66655443

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.16  E-value=0.00075  Score=43.04  Aligned_cols=75  Identities=11%  Similarity=-0.026  Sum_probs=48.1

Q ss_pred             cccCCh-HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCc
Q 043826            9 LHDWND-EHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSG   87 (104)
Q Consensus         9 lH~~~d-~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~   87 (104)
                      +++.+. ++...+++++++.|+|||+++|...-...+...+.                    .....+..+++ ++||+.
T Consensus       148 ~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~--------------------~~v~~~v~~l~-~~gf~i  206 (227)
T d1g8aa_         148 FEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEP--------------------EQVFREVEREL-SEYFEV  206 (227)
T ss_dssp             EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCH--------------------HHHHHHHHHHH-HTTSEE
T ss_pred             EEEccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCH--------------------HHHHHHHHHHH-HcCCEE
Confidence            344432 34678999999999999999987543221111110                    00122444555 579999


Q ss_pred             eEEEEeCC---CeEEEEEEC
Q 043826           88 MSCERAIG---NLWVMEFYK  104 (104)
Q Consensus        88 ~~~~~~~~---~~~vie~~~  104 (104)
                      .+...+.+   .+.++-++|
T Consensus       207 ie~i~L~p~~~~H~~vv~rK  226 (227)
T d1g8aa_         207 IERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             EEEEECTTTSSSEEEEEEEC
T ss_pred             EEEEcCCCCCCceEEEEEEe
Confidence            99988865   488888887

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=97.12  E-value=0.00041  Score=44.34  Aligned_cols=34  Identities=15%  Similarity=0.090  Sum_probs=27.3

Q ss_pred             EeccccccC--ChHHHHHHHHHHHhhCCCCCEEEEE
Q 043826            4 CTLTILHDW--NDEHCLKLLKNCYKSIPEDGKVIVV   37 (104)
Q Consensus         4 ~~~~vlH~~--~d~~~~~iL~~~~~aL~pgg~l~i~   37 (104)
                      +...++|+.  +.++..++++++.+.|+|||++++.
T Consensus        98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            445678876  3456789999999999999999875

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.07  E-value=0.00012  Score=46.51  Aligned_cols=37  Identities=14%  Similarity=0.228  Sum_probs=31.1

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      +++..+++|+++.++..+.|+++++.|+|||++++..
T Consensus       109 I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            4555678888888888999999999999999998743

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=96.98  E-value=0.00011  Score=46.30  Aligned_cols=35  Identities=14%  Similarity=0.137  Sum_probs=29.3

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      ++.+..++|+++|.  .++|+++++.|+|||.+++..
T Consensus       106 ii~~~~~~~~~~d~--~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         106 VLALGDVLSYVENK--DKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             EEECSSHHHHCSCH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeeecchhhhhhhH--HHHHHHHHhhcCcCcEEEEEE
Confidence            44556799999887  578999999999999998865

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.55  E-value=0.0028  Score=40.96  Aligned_cols=62  Identities=11%  Similarity=0.137  Sum_probs=44.2

Q ss_pred             CChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEE
Q 043826           12 WNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCE   91 (104)
Q Consensus        12 ~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~   91 (104)
                      +..+...++++.+++.|+|||++++.+...+                             ..+++.+.++++||+.++..
T Consensus       192 i~~~~l~~l~~~~~~~LkpGG~lilSgil~~-----------------------------~~~~v~~~~~~~Gf~~~~~~  242 (254)
T d2nxca1         192 LYAELHAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             CCHHHHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTCEEEEEE
T ss_pred             cccccHHHHHHHHHHhcCCCcEEEEEecchh-----------------------------hHHHHHHHHHHCCCEEEEEE
Confidence            3344567889999999999999998654211                             14577888999999998877


Q ss_pred             EeCCCeEEEEEE
Q 043826           92 RAIGNLWVMEFY  103 (104)
Q Consensus        92 ~~~~~~~vie~~  103 (104)
                      .... ...+..+
T Consensus       243 ~~~~-Wv~l~~~  253 (254)
T d2nxca1         243 AEGE-WVLLAYG  253 (254)
T ss_dssp             EETT-EEEEEEE
T ss_pred             EECC-EEEEEEe
Confidence            6644 3344444

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.52  E-value=0.00054  Score=44.70  Aligned_cols=36  Identities=17%  Similarity=0.197  Sum_probs=28.4

Q ss_pred             EEEeccccccCCh-----HHHHHHHHHHHhhCCCCCEEEEE
Q 043826            2 INCTLTILHDWND-----EHCLKLLKNCYKSIPEDGKVIVV   37 (104)
Q Consensus         2 ~y~~~~vlH~~~d-----~~~~~iL~~~~~aL~pgg~l~i~   37 (104)
                      +.++.++++++++     ++..++|+++++.|+|||++++-
T Consensus       133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  173 (292)
T d1xvaa_         133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  173 (292)
T ss_dssp             EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence            3445567888765     46789999999999999998773

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00014  Score=46.15  Aligned_cols=70  Identities=10%  Similarity=-0.032  Sum_probs=42.0

Q ss_pred             eccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCC
Q 043826            5 TLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAG   84 (104)
Q Consensus         5 ~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aG   84 (104)
                      ....+++++|  ..+.++++++.|+|||++++.+..........       .        ..+......+.+...+.++|
T Consensus       132 ~~~~~~~~~~--~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~-------~--------~~~~~~~~~~~~~~~l~~ag  194 (229)
T d1zx0a1         132 LSEETWHTHQ--FNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS-------K--------YSDITIMFEETQVPALLEAG  194 (229)
T ss_dssp             CBGGGTTTHH--HHHHHHTHHHHEEEEEEEEECCHHHHHHHTTT-------T--------CSCHHHHHHHHTHHHHHHTT
T ss_pred             cccccccccC--HHHHHHHHHHHcCCCcEEEEEecCCcchhhhh-------h--------hhhcchhhhhHHHHHHHHCC
Confidence            3456666655  47899999999999999987543211100000       0        01112222346667788899


Q ss_pred             CCceEEE
Q 043826           85 FSGMSCE   91 (104)
Q Consensus        85 f~~~~~~   91 (104)
                      |+..++.
T Consensus       195 F~~~~i~  201 (229)
T d1zx0a1         195 FRRENIR  201 (229)
T ss_dssp             CCGGGEE
T ss_pred             CeeEEEE
Confidence            9977654

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.23  E-value=0.0067  Score=37.84  Aligned_cols=66  Identities=12%  Similarity=0.054  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCCcccchhhhhhhhhhhcCCCceecCHHHHHHHHHhCCCCceEEEEeCC
Q 043826           16 HCLKLLKNCYKSIPEDGKVIVVELMLPEVPNTSIESKSNFHFDVLMMIQRPDGKERTRHEFMTLATGAGFSGMSCERAIG   95 (104)
Q Consensus        16 ~~~~iL~~~~~aL~pgg~l~i~d~~~~~~~~~~~~~~~~~~~~l~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~   95 (104)
                      +...+++++++.|+|||++++.+.....+...++.    ..+                ++..+.+ ++||+.++...+.+
T Consensus       138 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~----~~~----------------~~~~~~l-~~gf~i~E~i~L~P  196 (209)
T d1nt2a_         138 QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPE----EVF----------------KSVLKEM-EGDFKIVKHGSLMP  196 (209)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHH----HHH----------------HHHHHHH-HTTSEEEEEEECTT
T ss_pred             hHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHH----HHH----------------HHHHHHH-HcCCEEEEEEccCC
Confidence            34789999999999999999987532211111110    001                1222333 38999999988865


Q ss_pred             ---CeEEEEE
Q 043826           96 ---NLWVMEF  102 (104)
Q Consensus        96 ---~~~vie~  102 (104)
                         .+.+|-+
T Consensus       197 ~~~~H~~v~~  206 (209)
T d1nt2a_         197 YHRDHIFIHA  206 (209)
T ss_dssp             TCTTEEEEEE
T ss_pred             CccCcEEEEE
Confidence               3555543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.37  E-value=0.016  Score=39.82  Aligned_cols=30  Identities=13%  Similarity=0.108  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 043826           15 EHCLKLLKNCYKSIPEDGKVIVVELMLPEV   44 (104)
Q Consensus        15 ~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~   44 (104)
                      ++..+.|+++++.|+|||++++.|.+.+..
T Consensus       310 ~~l~~~L~ei~r~LKPGGrIVs~~~~~~~~  339 (406)
T d1u2za_         310 EDLNKKVEKILQTAKVGCKIISLKSLRSLT  339 (406)
T ss_dssp             HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             hHHHHHHHHHHHhcCCCcEEEEecccCCCc
Confidence            456789999999999999999998776544

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.019  Score=38.02  Aligned_cols=37  Identities=14%  Similarity=0.178  Sum_probs=27.5

Q ss_pred             ccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 043826            6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELMLPEV   44 (104)
Q Consensus         6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~~~~~   44 (104)
                      .+.+.++  ++..+.|+++++.|+|||++++.+...+.+
T Consensus       236 ~~~~~f~--~~~~~~l~e~~r~LKpGg~iv~~~~~~~~~  272 (328)
T d1nw3a_         236 VNNFAFG--PEVDHQLKERFANMKEGGRIVSSKPFAPLN  272 (328)
T ss_dssp             ECCTTTC--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             Ecceecc--hHHHHHHHHHHHhCCCCcEEEEecccCCCC
Confidence            3434444  345788999999999999999988776544

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=94.17  E-value=0.0042  Score=40.30  Aligned_cols=31  Identities=16%  Similarity=0.404  Sum_probs=26.5

Q ss_pred             ccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 043826            6 LTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus         6 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      -.+++|.+|+  .+.|+++.++|+|||++++.-
T Consensus       174 D~V~~d~p~p--~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         174 DALFLDVPDP--WNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             EEEEECCSCG--GGTHHHHHHHEEEEEEEEEEE
T ss_pred             eeeEecCCCH--HHHHHHHHhhcCCCCEEEEEe
Confidence            3578899887  688999999999999998864

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.58  E-value=0.022  Score=34.57  Aligned_cols=34  Identities=12%  Similarity=0.139  Sum_probs=25.4

Q ss_pred             EeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 043826            4 CTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVV   37 (104)
Q Consensus         4 ~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~   37 (104)
                      ++++...++..+...++++++.+.|+|||++++.
T Consensus       123 Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         123 IITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             EEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            3444434455566789999999999999999774

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=88.17  E-value=0.038  Score=35.33  Aligned_cols=28  Identities=7%  Similarity=0.094  Sum_probs=22.7

Q ss_pred             ccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 043826            8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVV   37 (104)
Q Consensus         8 vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~   37 (104)
                      |+.|.+++  .+.|.+++++|+|||++++.
T Consensus       158 V~ld~p~p--~~~l~~~~~~LKpGG~lv~~  185 (250)
T d1yb2a1         158 VIADIPDP--WNHVQKIASMMKPGSVATFY  185 (250)
T ss_dssp             EEECCSCG--GGSHHHHHHTEEEEEEEEEE
T ss_pred             eeecCCch--HHHHHHHHHhcCCCceEEEE
Confidence            44466665  57899999999999999875

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=87.98  E-value=0.53  Score=30.46  Aligned_cols=38  Identities=11%  Similarity=-0.100  Sum_probs=31.7

Q ss_pred             EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 043826            2 INCTLTILHDWNDEHCLKLLKNCYKSIPEDGKVIVVELM   40 (104)
Q Consensus         2 ~y~~~~vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~~   40 (104)
                      +++.-.++..++.++..++|+.+.+..+||+.+++ |..
T Consensus       169 l~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~-d~~  206 (297)
T d2uyoa1         169 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETS  206 (297)
T ss_dssp             EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECC
T ss_pred             EEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEE-Eec
Confidence            45666789999999999999999999999998754 543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.04  E-value=0.058  Score=34.76  Aligned_cols=30  Identities=13%  Similarity=0.154  Sum_probs=24.4

Q ss_pred             ccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826            8 ILHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus         8 vlH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      |+-|.+|+  ...+.+++++|+|||++++..+
T Consensus       172 V~ldlp~P--~~~l~~~~~~LkpGG~lv~~~P  201 (264)
T d1i9ga_         172 AVLDMLAP--WEVLDAVSRLLVAGGVLMVYVA  201 (264)
T ss_dssp             EEEESSCG--GGGHHHHHHHEEEEEEEEEEES
T ss_pred             EEEecCCH--HHHHHHHHhccCCCCEEEEEeC
Confidence            34477776  6889999999999999988764

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.81  E-value=0.046  Score=36.22  Aligned_cols=29  Identities=17%  Similarity=0.126  Sum_probs=22.6

Q ss_pred             cccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 043826            9 LHDWNDEHCLKLLKNCYKSIPEDGKVIVVEL   39 (104)
Q Consensus         9 lH~~~d~~~~~iL~~~~~aL~pgg~l~i~d~   39 (104)
                      +-|.+++  ...|.+++++|+|||++++.-+
T Consensus       185 ~LD~p~P--~~~l~~~~~~LKpGG~lv~~~P  213 (324)
T d2b25a1         185 ALDMLNP--HVTLPVFYPHLKHGGVCAVYVV  213 (324)
T ss_dssp             EECSSST--TTTHHHHGGGEEEEEEEEEEES
T ss_pred             eecCcCH--HHHHHHHHHhccCCCEEEEEeC
Confidence            3366654  4689999999999999998654

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=85.94  E-value=0.24  Score=30.32  Aligned_cols=20  Identities=15%  Similarity=0.230  Sum_probs=18.2

Q ss_pred             HHHHHHHHhhCCCCCEEEEE
Q 043826           18 LKLLKNCYKSIPEDGKVIVV   37 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~   37 (104)
                      ..+|+.+.+.|+|||.|.|.
T Consensus       124 ~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         124 SHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             HHHHHHHHHHHTTSCEEEEE
T ss_pred             HHHHHHHHHhCCCCcEEEEE
Confidence            47999999999999999885

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=82.49  E-value=0.6  Score=28.45  Aligned_cols=20  Identities=20%  Similarity=0.439  Sum_probs=18.0

Q ss_pred             HHHHHHHHhhCCCCCEEEEE
Q 043826           18 LKLLKNCYKSIPEDGKVIVV   37 (104)
Q Consensus        18 ~~iL~~~~~aL~pgg~l~i~   37 (104)
                      ..+|+.+.+.|+|||.+.+.
T Consensus       126 ~~~l~~~~~~LkpgG~l~i~  145 (204)
T d1yzha1         126 KTFLDTFKRILPENGEIHFK  145 (204)
T ss_dssp             HHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHHhCCCCcEEEEE
Confidence            58999999999999999774

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=82.49  E-value=0.36  Score=30.45  Aligned_cols=20  Identities=15%  Similarity=0.097  Sum_probs=17.0

Q ss_pred             HHHHHhhCCCCCEEEEEeee
Q 043826           21 LKNCYKSIPEDGKVIVVELM   40 (104)
Q Consensus        21 L~~~~~aL~pgg~l~i~d~~   40 (104)
                      ++++++.|+|||++++..+.
T Consensus       160 ~~e~~rvLkpgG~l~~~~p~  179 (268)
T d1p91a_         160 AEELARVVKPGGWVITATPG  179 (268)
T ss_dssp             HHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHhCCCcEEEEEeeC
Confidence            56788999999999998753

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.94  E-value=0.21  Score=29.79  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=19.0

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEe
Q 043826           17 CLKLLKNCYKSIPEDGKVIVVE   38 (104)
Q Consensus        17 ~~~iL~~~~~aL~pgg~l~i~d   38 (104)
                      ..++++.+.+.|+|||++++..
T Consensus       113 ~~~~~~~~~~~LkpgG~lvi~~  134 (186)
T d1l3ia_         113 LQEILRIIKDKLKPGGRIIVTA  134 (186)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             chHHHHHHHHHhCcCCEEEEEe
Confidence            4688999999999999998754