Citrus Sinensis ID: 043839

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
Protein Sequence
NYLQSEAIPTIWRQIYSVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQLINPSRLHSSKRRAGGTIKACYVPSIVYTSLVLVADKTGFVRMPHMEKESLANVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQPHYRCNRKSRGLQTSKGLKESLLKSVEKE
Secondary Structure (PSIPRED)
cccccccHHHHHHHHccccccHHHHHHHHHHcccccccccccccHHHHHHccccEEEEEcccccEEcEEEccHHHHHHHHHHHHHHccEEEccccccccccEEEEEEEcccccccccccccccEEEEEEEcccccccccccHHHHcccccEEEEEEEcccccccccccccccccccEEccccccccccccccEEEEccccccccccccccccccccEEEccccccccHHHHcccccccEEEEEccccccHHHHHHHHHccccccEEEEEEccccccccccccccccccccccEEEEEccccccccHHHccccccccEEEEEcccccccccEEEEcccccccEEEEcccccccccEEEEEEccccccccccccccccccEEEEEcccHHHHHHHHcccHHHHHccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccHHEEEEEEHHHcccccccHEEEEEEccccccEcHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccEEEEcccccHHHHHcccEEEEEEccccEcccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccHHHHcccccccccHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHcEEEEEcccccccccccccccccccccccEEEEEccccccccHHHHHHccccEEEEEEccccccccEEEEEccHHHHEEEEEcccccccccEEEEccHHHHHHccccHHHHHHHcEEEEccccHHHHHHHccccHHHHHHHHHHcccHHccc
Coil and Loop (DISEMBL)
nylqseaiPTIWRQIYSVMGLPFHLKVCYIYLCVyrpsieisTRQLYQLinpsrlhsskrraggtikacyvpSIVYTSLVLVAdktgfvrmphmekeslanvkrcfilkdlteffplehsdMYLQSFLnhssesdhlagidCENFCKKFKHLRVLNLGsavldlyppglenlfhLKYLKLITPLLKLMQKLMHLnfgsitmpsppnnyssslkDLIFIsavhpssctpdilgrlpnvqtlrisgdlsyhhsgvskslcelHKLECLKLVNEGKMWQFSRMIlseykfpptltqlslsntklmedpmptleklpllevlklkqnssfpllkiLHLKSMLWLEewtmgagsmpkleslilnpcaylRKLPEELWCIKNLcklelhwpqphyrcnrksrglqtskgLKESLLKSVEKE
Flexible Loop (DISEMBL)
nylqseaipTIWRQIYSVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQLInpsrlhsskrragGTIKACYVPSIVYTSLVLVADKTGFVRMPHMEKESLANVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQPHYRcnrksrglqtskglkesllksveke
Low Complexity Region (SEG)
NYLQSEAIPTIWRQIYSVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQLINPSRLHSSKRRAGGTIKACYVPSIVYTSLVLVADKTGFVRMPHMEKESLANVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSlcelhkleclklVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTleklpllevlklkQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQPHYRCNRKSRGLQTSKGLKESLLKSVEKE
Disordered region (IsUnstruct)
******AIPTIWRQIYSVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQLINPSRLHS*KRRAGGTIKACYVPSIVYTSLVLVADKTGFVRMPHMEKESLANVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITM*********SLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSN*********TLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQPHYRC************************
Disordered Region (DISOPRED)
******AIPTIWRQIYSVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQLINPSRLHSSKRRAGGTIKACYVPSIVYTSLVLVADKTGFVRMPHMEKE*LANVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ*******************ESLLKSVE**
Disordered Region (DISEMBL)
NYLQSEAIPTIWRQIYSVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQLINPSRLHSSKRRAGGTIKACYVPSIVYTSLVLVADKTGFVRMPHMEKESLANVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQPHYRCNRKSRGLQTSKGLKESLLKSVEKE
Disordered Region (DISPRO)
*Y**SEAIPTIWRQIYSVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQLINPSRLHSSKRRAGGTIKACYVPSIVYTSLVLVADKTGFVRMPHMEKESLANVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQPHYRCNRKSRGLQTSKGLKESLLKSV***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NYLQSEAIPTIWRQIYSVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQLINPSRLHSSKRRAGGTIKACYVPSIVYTSLVLVADKTGFVRMPHMEKESLANVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQPHYRCNRKSRGLQTSKGLKESLLKSVEKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	415	2.2.26 [Sep-21-2011]
Q9XIF0	906	Putative disease resistan	yes	no	0.595	0.272	0.308	1e-11
P0DI18	1049	Probable disease resistan	no	no	0.527	0.208	0.288	7e-11
P0DI17	1049	Probable disease resistan	no	no	0.527	0.208	0.288	7e-11
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.549	0.253	0.253	3e-10
Q9FJK8	908	Probable disease resistan	no	no	0.843	0.385	0.237	4e-10
P59584	910	Disease resistance protei	no	no	0.556	0.253	0.262	1e-09
Q8W4J9	908	Disease resistance protei	no	no	0.896	0.409	0.223	2e-09
Q8W474	907	Probable disease resistan	no	no	0.534	0.244	0.312	2e-09
Q8W3K3	910	Putative disease resistan	no	no	0.240	0.109	0.342	1e-08
Q8W3K0	1138	Probable disease resistan	no	no	0.318	0.115	0.337	2e-08

>sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 124/285 (43%), Gaps = 38/285 (13%)

Query: 148 KFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKL---------ITPLLKLMQKLMHLNFGS 198
           K  HL+ L+L  A +   P  L NL  L YL L         +  + K M +L +L+   
Sbjct: 596 KLIHLKYLSLYQASVTYLPSSLRNLKSLLYLNLRINSGQLINVPNVFKEMLELRYLSLPW 655

Query: 199 ITMPSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRI--SGDLSYHHSGVSKS 256
                      + LK    I+     S   D L R+  ++TL+I  SG+   H   +S +
Sbjct: 656 ERSSLTKLELGNLLKLETLINFSTKDSSVTD-LHRMTKLRTLQILISGE-GLHMETLSSA 713

Query: 257 LCELHKLECLKLVNEGKMWQFSR-------MILSEYKFPPTLTQLSLSNTKLMEDPMPTL 309
           L  L  LE L +       QF         M+     FP  LT +SL    L EDPMPTL
Sbjct: 714 LSMLGHLEDLTVTPSENSVQFKHPKLIYRPMLPDVQHFPSHLTTISLVYCFLEEDPMPTL 773

Query: 310 EKLPLLEVLKLKQNS-----------SFPLLKILHLKSMLWLEEWTMGAGSMPKLESLIL 358
           EKL  L+V+ L  N+            FP L  L +  +  LEEW +  GSMP L +L +
Sbjct: 774 EKLLQLKVVSLWYNAYVGRRMVCTGGGFPPLHRLEIWGLDALEEWIVEEGSMPLLHTLHI 833

Query: 359 NPCAYLRKLPEELWCIKNLCKLELHWPQPHYRCNRKSRGLQTSKG 403
             C  L+++P+ L  I +L +L +       R N K    + SKG
Sbjct: 834 VDCKKLKEIPDGLRFISSLKELAI-------RTNEKVFQKKVSKG 871

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 113/260 (43%), Gaps = 41/260 (15%)

Query: 151 HLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT---------PLLKLMQKLMHLNFGSITM 201
           HLR LNL  A +   P  L NL  L YL L+           +LK MQ+L +L      M
Sbjct: 611 HLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGSTLVPNVLKEMQQLRYLALPK-DM 669

Query: 202 PSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELH 261
                   S+L  L  +      +C+ + L  +  ++TL I          ++ S+  L 
Sbjct: 670 GRKTKLELSNLVKLETLKNFSTKNCSLEDLRGMVRLRTLTIELRKETSLETLAASIGGLK 729

Query: 262 KLECLKLVN---------EGKMWQFSRM-----------ILSEYKFPPTLTQLSLSNTKL 301
            LE L + +          G ++ F  +           +  E  FP  LT L L + +L
Sbjct: 730 YLESLTITDLGSEMRTKEAGIVFDFVYLKTLTLKLYMPRLSKEQHFPSHLTTLYLQHCRL 789

Query: 302 MEDPMPTLEKLPLLEVLKLKQNS-----------SFPLLKILHLKSMLWLEEWTMGAGSM 350
            EDPMP LEKL  L+ L+L++ S            FP L+ L +K +   E+W +   SM
Sbjct: 790 EEDPMPILEKLHQLKELELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEESSM 849

Query: 351 PKLESLILNPCAYLRKLPEE 370
           P L +L +  C  L++LP+E
Sbjct: 850 PVLHTLDIRDCRKLKQLPDE 869

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 113/260 (43%), Gaps = 41/260 (15%)

Query: 151 HLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT---------PLLKLMQKLMHLNFGSITM 201
           HLR LNL  A +   P  L NL  L YL L+           +LK MQ+L +L      M
Sbjct: 611 HLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGSTLVPNVLKEMQQLRYLALPK-DM 669

Query: 202 PSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELH 261
                   S+L  L  +      +C+ + L  +  ++TL I          ++ S+  L 
Sbjct: 670 GRKTKLELSNLVKLETLKNFSTKNCSLEDLRGMVRLRTLTIELRKETSLETLAASIGGLK 729

Query: 262 KLECLKLVN---------EGKMWQFSRM-----------ILSEYKFPPTLTQLSLSNTKL 301
            LE L + +          G ++ F  +           +  E  FP  LT L L + +L
Sbjct: 730 YLESLTITDLGSEMRTKEAGIVFDFVYLKTLTLKLYMPRLSKEQHFPSHLTTLYLQHCRL 789

Query: 302 MEDPMPTLEKLPLLEVLKLKQNS-----------SFPLLKILHLKSMLWLEEWTMGAGSM 350
            EDPMP LEKL  L+ L+L++ S            FP L+ L +K +   E+W +   SM
Sbjct: 790 EEDPMPILEKLHQLKELELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEESSM 849

Query: 351 PKLESLILNPCAYLRKLPEE 370
           P L +L +  C  L++LP+E
Sbjct: 850 PVLHTLDIRDCRKLKQLPDE 869

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 125/276 (45%), Gaps = 48/276 (17%)

Query: 151 HLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLL------KLMQKLMHLNFGSITMPSP 204
           HLR L+L  AV+   P  + NL  + YL L   +        ++++++ L +  +++P  
Sbjct: 594 HLRFLSLHQAVVSHLPSTIRNLKLMLYLNLHVAIGVPVHVPNVLKEMLELRY--LSLPLD 651

Query: 205 PNNYSS-SLKDLIFIS-----AVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLC 258
            ++ +   L DL+ +      +   SS T D+L R+  ++   +S         +S SL 
Sbjct: 652 MHDKTKLELGDLVNLEYLWCFSTQHSSVT-DLL-RMTKLRFFGVSFSERCTFENLSSSLR 709

Query: 259 ELHKLECLKLVNEGKMWQFSRM---------------------ILSEYKFPPTLTQLSLS 297
           +  KLE L  +   K +    +                     I  +++ PP +  + L 
Sbjct: 710 QFRKLETLSFIYSRKTYMVDYVGEFVLDFIHLKKLSLGVHLSKIPDQHQLPPHIAHIYLL 769

Query: 298 NTKLMEDPMPTLEKLPLLEVLKLKQNS-----------SFPLLKILHLKSMLWLEEWTMG 346
              + EDPMP LEKL  L+ ++L++ +            FP L+ L +     LEEW + 
Sbjct: 770 FCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVCSKGGFPQLRALQISEQSELEEWIVE 829

Query: 347 AGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLEL 382
            GSMP L  LI++ C  L +LP+ L  + +L +L++
Sbjct: 830 EGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKI 865

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 189/468 (40%), Gaps = 118/468 (25%)

Query: 21  LPFHLKVCYIYLCVYRPSIEISTRQLYQLINPSRLHSSKRRAGGTIKAC---YVPSIVYT 77
           LP HLK  ++YL  +    +I T+ L+       ++      G TI+     Y+  +V  
Sbjct: 419 LPTHLKHRFLYLAHFPEDSKIYTQDLFNYWAAEGIYD-----GSTIQDSGEYYLEELVRR 473

Query: 78  SLVLVADKT-----GFVRMPHMEKES-LANVKRCFILKDLTEFFPLEHSDMYLQS----- 126
           +LV+  ++       F +M  M +E  L+  K    L+ + +  P   S +  QS     
Sbjct: 474 NLVIADNRYLSLEFNFCQMHDMMREVCLSKAKEENFLQIIKD--PTSTSTINAQSPSRSR 531

Query: 127 -FLNHSSESDHLAG--------------------IDCENFCKKFKHLRVLNLGSAVLD-- 163
            F  HS ++ H+ G                    I   +       LRVL+L     +  
Sbjct: 532 RFSIHSGKAFHILGHRNNPKVRSLIVSRFEEDFWIRSASVFHNLTLLRVLDLSRVKFEGG 591

Query: 164 LYPPGLENLFHLKYLKLITPLL-----------------------------KLMQKLMHL 194
             P  +  L HL+YL L   ++                              ++++++ L
Sbjct: 592 KLPSSIGGLIHLRYLSLYGAVVSHLPSTMRNLKLLLFLNLRVDNKEPIHVPNVLKEMLEL 651

Query: 195 NFGSITMPSPPNNYSS-SLKDLI------FISAVHPSSCTPDILGRLPNVQTLRISGDLS 247
            +  +++P   ++ +   L DL+      + S  H  S   D+L R+  ++ L +S    
Sbjct: 652 RY--LSLPQEMDDKTKLELGDLVNLEYLWYFSTQH--SSVTDLL-RMTKLRNLGVSLSER 706

Query: 248 YHHSGVSKSLCELHKLECL------KLVNEGKMWQFS--------------RM--ILSEY 285
            +   +S SL EL  LE L      ++V    M +F               RM  I  ++
Sbjct: 707 CNFETLSSSLRELRNLEMLNVLFSPEIVMVDHMGEFVLDHFIHLKQLGLAVRMSKIPDQH 766

Query: 286 KFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNS-----------SFPLLKILHL 334
           +FPP L  + L +  + EDPMP LEKL  L+ + L   +            FP L  L +
Sbjct: 767 QFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVCSKGGFPQLCALGI 826

Query: 335 KSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLEL 382
                LEEW +  GSMP L +L ++ C  L++LP+ L  I +L +L++
Sbjct: 827 SGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKI 874

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 116/274 (42%), Gaps = 43/274 (15%)

Query: 151 HLRVLNLGSAVLDLYPPGLENL---------FHLKYLKLITPLLKLMQKLMHLNFGSITM 201
           HLR L L  AV+   P  + NL          H + L  +  +LK M +L +L+   + M
Sbjct: 604 HLRYLRLYGAVVSHLPSTMRNLKLLLYLNLSVHNEDLIHVPNVLKEMIELRYLSI-PVKM 662

Query: 202 PSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELH 261
                     L +L ++        +   L R+  ++ L +S    Y+   +S SL EL 
Sbjct: 663 DDKTKLELGDLVNLEYLYGFSTQHTSVTDLLRMTKLRNLTVSLSERYNFKTLSSSLRELR 722

Query: 262 KLECLKLVNEGKMWQFSRM----------------------ILSEYKFPPTLTQLSLSNT 299
            LE L ++   K +    M                      I  +++FPP L  + L   
Sbjct: 723 NLETLYVLFSRKTYMVDHMGEFVLDHFIHLKELGLVVRMSKIPDQHQFPPHLVHIFLFYC 782

Query: 300 KLMEDPMPTLEKLPLLEVLKLK-----------QNSSFPLLKILHLKSMLWLEEWTMGAG 348
            + EDPMP LEKL  L+ ++L+               F  L  L +     LE+W +  G
Sbjct: 783 GMEEDPMPILEKLHHLKSVQLRYKAFVGRRMVCSKDGFTQLCALDISKQSELEDWIVEEG 842

Query: 349 SMPKLESLILNPCAYLRKLPEELWCIKNLCKLEL 382
           SMP L +L ++ C  L++LP+ L  I +L +L++
Sbjct: 843 SMPCLRTLTIHDCEKLKELPDGLKYITSLKELKI 876

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 109/487 (22%), Positives = 197/487 (40%), Gaps = 115/487 (23%)

Query: 1   NYLQSEAIPTIWRQI-YSVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQLINPSRLHSSK 59
           ++L   ++ +++R +  S   LP HLK C++ L  +    EIST  L+       ++   
Sbjct: 398 SWLDDNSLNSVYRILSLSYEDLPTHLKHCFLNLAHFPEDSEISTYSLFYYWAAEGIYD-- 455

Query: 60  RRAGGTIKAC---YVPSIVYTSLVLVAD-----KTGFVRMPHMEKES-LANVKRCFILKD 110
              G TI+     Y+  +V  +LV+  D     ++ + +M  M +E  L+  K    L+ 
Sbjct: 456 ---GSTIEDSGEYYLEELVRRNLVIADDNYLSWQSKYCQMHDMMREVCLSKAKEENFLQI 512

Query: 111 LTEFFPLEHSDMYLQS------FLNHSSESDHLAG--------------------IDCEN 144
           + +  P   S +  QS         HS ++ H+ G                    I   +
Sbjct: 513 IID--PTCTSTINAQSPSRSRRLSIHSGKAFHILGHKNKTKVRSLIVPRFEEDYWIRSAS 570

Query: 145 FCKKFKHLRVLNLGSAVLD--LYPPGLENLFHLKYLKLITPLL----------------- 185
                  LRVL+L     +    P  +  L HL+YL L    +                 
Sbjct: 571 VFHNLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLYEAKVSHLPSTMRNLKLLLYLN 630

Query: 186 ------------KLMQKLMHLNFGSITMPSPPNNYSS-SLKDLIFISAVH----PSSCTP 228
                        ++++++ L +  +++P   ++ +   L DL+ +  ++      S   
Sbjct: 631 LRVDTEEPIHVPNVLKEMIQLRY--LSLPLKMDDKTKLELGDLVNLEYLYGFSTQHSSVT 688

Query: 229 DILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM-------- 280
           D+L R+  ++ L +S     +   +S SL EL  LE L  +   + +    M        
Sbjct: 689 DLL-RMTKLRYLAVSLSERCNFETLSSSLRELRNLETLNFLFSLETYMVDYMGEFVLDHF 747

Query: 281 --------------ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNS-- 324
                         I  +++FPP L  L L    + EDPMP LEKL  L+ ++L + +  
Sbjct: 748 IHLKQLGLAVRMSKIPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFL 807

Query: 325 ---------SFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIK 375
                     FP L ++ +     LEEW +  GSMP L +L ++ C  L++LP+ L  I 
Sbjct: 808 GSRMVCSKGGFPQLCVIEISKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYIT 867

Query: 376 NLCKLEL 382
           +L +L++
Sbjct: 868 SLKELKI 874

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 116/266 (43%), Gaps = 44/266 (16%)

Query: 151 HLRVLNLGSAVLDLYPPGLENLFHLKYLKL--------ITPLLKLMQKLMHL----NFGS 198
           HLR L+L  A +   P  L NL  L YL L        +  +   M +L +L    +   
Sbjct: 610 HLRYLSLQDAKVSHLPSSLGNLMLLIYLNLDVDTEFIFVPDVFMRMHELRYLKLPLHMHK 669

Query: 199 ITMPSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLC 258
            T  S  N     L+ L++ S  H SS   D+ G +  + TL I          +S S+ 
Sbjct: 670 KTRLSLRN--LVKLETLVYFSTWHSSS--KDLCG-MTRLMTLAIRLTRVTSTETLSASIS 724

Query: 259 ELHKLECLKLVN--------EGKMWQF---SRMILSEY-----KFPPTLTQLSLSNTKLM 302
            L  LE L +V         EG +  F     ++L  Y      FP  LT + LS   L 
Sbjct: 725 GLRNLEYLYIVGTHSKKMREEGIVLDFIHLKHLLLDLYMPRQQHFPSRLTFVKLSECGLE 784

Query: 303 EDPMPTLEKLPLLEVLKLKQNS-----------SFPLLKILHLKSMLWLEEWTMGAGSMP 351
           EDPMP LEKL  L+ + L + S            FP LK L +  +   EEW +  GSMP
Sbjct: 785 EDPMPILEKLLHLKGVILLKGSYCGRRMVCSGGGFPQLKKLEIVGLNKWEEWLVEEGSMP 844

Query: 352 KLESLILNPCAYLRKLPEELWCIKNL 377
            LE+L +  C  L+++P+ L  I +L
Sbjct: 845 LLETLSILDCEELKEIPDGLRFIYSL 870

Possible disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 11/111 (9%)

Query: 283 SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLK-----------QNSSFPLLKI 331
            E  FP  LT +SL    L+EDP+P LEKL  L+ ++L             +  FP L  
Sbjct: 769 DEQHFPSHLTSISLDGCCLVEDPLPILEKLLELKEVRLDFRAFCGKRMVSSDGGFPQLHR 828

Query: 332 LHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLEL 382
           L++  +   EEW +  GSMP+L +L +  C  L++LP+ L  I ++  L++
Sbjct: 829 LYIWGLAEWEEWIVEEGSMPRLHTLTIWNCQKLKQLPDGLRFIYSIKDLDM 879

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K0|DRL9_ARATH Probable disease resistance protein At1g58602 OS=Arabidopsis thaliana GN=At1g58602 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 72/157 (45%), Gaps = 25/157 (15%)

Query: 234 LPNVQTLRISGDLSYHHSGVSKS----LCELHKLECLKLVNEGKMWQFSRMILSEYKFPP 289
            P +Q L ISG   +    V +S    L  L+  +C KL             L +   P 
Sbjct: 823 FPQLQKLSISGLKEWEDWKVEESSMPLLLTLNIFDCRKLKQ-----------LPDEHLPS 871

Query: 290 TLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKILHLKSMLWL 340
            LT +SL    L EDP+PTLE+L  L+ L L +            FP L  L L  +  L
Sbjct: 872 HLTAISLKKCGL-EDPIPTLERLVHLKELSLSELCGRIMVCTGGGFPQLHKLDLSELDGL 930

Query: 341 EEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNL 377
           EEW +  GSMP+L +L +  C  L+KLP     ++NL
Sbjct: 931 EEWIVEDGSMPRLHTLEIRRCLKLKKLPNGFPQLQNL 967

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
359496848	856	PREDICTED: disease resistance RPP8-like	0.881	0.427	0.233	2e-19
359491404	922	PREDICTED: probable disease resistance R	0.845	0.380	0.259	2e-18
147766035	902	hypothetical protein VITISV_038742 [Viti	0.881	0.405	0.226	9e-18
356567194	750	PREDICTED: disease resistance protein RP	0.831	0.46	0.243	1e-14
350535589	888	NRC1 [Solanum lycopersicum] gi|83630761|	0.903	0.422	0.243	3e-14
356551912	771	PREDICTED: disease resistance protein RP	0.853	0.459	0.243	8e-14
359495931	1359	PREDICTED: probable disease resistance p	0.828	0.253	0.250	3e-13
296081343	1312	unnamed protein product [Vitis vinifera]	0.828	0.262	0.250	3e-13
46389753	364	hypothetical protein [Nicotiana tabacum]	0.636	0.725	0.262	4e-13
147795782	1450	hypothetical protein VITISV_023621 [Viti	0.787	0.225	0.257	5e-13

>gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 111/476 (23%), Positives = 198/476 (41%), Gaps = 110/476 (23%)

Query: 4   QSEAIPTIW---------------RQIYSVMGL-----PFHLKVCYIYLCVYRPSIEIST 43
           + E  P++W               RQ+  ++ L     P++LK C++Y  ++   +EI  
Sbjct: 340 RKEKTPSVWLRVLQSISWQLNNDSRQLMEILALSYNDLPYYLKPCFLYFGLFPEDLEIPV 399

Query: 44  RQLY--------------------------QLINPSRLHSSKRRAGGTIKACYVPSIVYT 77
            +L                           +L++ S +  +++R  G IKAC +  ++  
Sbjct: 400 GKLVLLWIAEGFVQQRGEESMEDVAEDFLEELVDRSMIQVAEKRYNGKIKACRIHDLLRD 459

Query: 78  SLVLVADKTGFVRM---PHMEKESLANVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSES 134
             +  A +  F+ +    +++       +R  +   L E+  L H + + +S L+ S   
Sbjct: 460 LAMSEAKECKFLEILDSTNIDTSVTTRARRISVHSSLEEYMKLRHPNPHFRSMLHFSRCE 519

Query: 135 DHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLI-TPLLKL------ 187
           + L     ++  +  K LRVL+L        P  +  L HL+YL L  T L +L      
Sbjct: 520 ESLRRDQWKSLFESLKLLRVLDLERVQTHALPKEIRELVHLRYLGLRRTGLQRLPSSIQN 579

Query: 188 -----------------------MQKLMHLNFGSITMPS-PPNNYSSSLKDLIFISAVHP 223
                                  M  L HL     ++   PP + S      +   +++ 
Sbjct: 580 FCNLQTLDIRATKVSRLPIQLWNMPGLRHLYLEKTSIAGHPPVHVSVMHLQTLSTVSIYG 639

Query: 224 SSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFS-RMIL 282
           +   PD+LG+L N++ L I G  +     +S+ L +L  L+ L+L     + + + +++L
Sbjct: 640 NQWIPDLLGKLTNLRKLGIHGYFASQTEALSRCLVKLSNLQNLQLRGTELILEPTIKLLL 699

Query: 283 SE------------YKFP------PTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNS 324
           ++             K P      P LT++ L N+ L++D    L KLP L++LKL  NS
Sbjct: 700 NQPNIHKLHLSGPIEKLPDPQEIQPNLTKIILENSLLVQDIFVILGKLPNLQMLKLLINS 759

Query: 325 -----------SFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPE 369
                       FP L  L L  ++ LEEW +  G+MP L  LI++ C  L+K+PE
Sbjct: 760 FFGKEITCSASGFPKLHGLELSELVNLEEWRVDDGAMPSLRHLIIDHCDQLKKIPE 815

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera]

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 122/471 (25%), Positives = 189/471 (40%), Gaps = 120/471 (25%)

Query: 17  SVMGLPFHLKVCYIYLCVYRPSIEISTRQLY--------------------------QLI 50
           S   LP++LK C++Y  ++    EIS R+L                           +L+
Sbjct: 427 SYSDLPYYLKSCFLYFGLFPEDYEISARRLILLWVAEGFVQPRGQEPLEDVAEDYLEELV 486

Query: 51  NPSRLHSSKRRAGGTIKACYVPSIVYTSLVLVADKTGFVRMPHME--KESLANVKRCFIL 108
             S +  + R++ G IK C V  +++   V    +  F+ + H E    SL  V+R  I 
Sbjct: 487 GRSMIQVATRKSNGRIKTCCVHDLLHELSVSKGKEDQFLDIIHGEFTVSSLTRVRRLAIH 546

Query: 109 KDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFC-------KKFKHLRVLNLGSAV 161
             +    P   +   ++S L             C + C       +KFK LR+L+L    
Sbjct: 547 LGVP---PTTKNTSKVRSLL-------------CFDICEPSFQELRKFKLLRILDLEGVY 590

Query: 162 LDLYPPGLENLFHLKYLKL-----------ITPLLKL-------------------MQKL 191
           +      + NL HL+YL L           I  LL L                   MQKL
Sbjct: 591 ISRLHSSIGNLIHLRYLGLRGTWLKKLPPSIQFLLNLQTLDLRSTLLNPIPIVIWKMQKL 650

Query: 192 MHLNFGSIT--MPSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYH 249
            HL F  +     +PP + S +    +    ++ +S   + L +L N++ L + GDL  H
Sbjct: 651 RHLYFNELEEMAVNPPTDASLANLQTLHGICINQTSYVENGLSKLTNLRELGLHGDLLLH 710

Query: 250 HSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-------------------------SE 284
              + K +    +LECLKL     M  F++  +                         +E
Sbjct: 711 EEAIGKWIFSSERLECLKLHTRDVMGDFAKNAIPKLNFSSHPHLIKLHLKGFMAKLFDAE 770

Query: 285 YKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNS-----------SFPLLKILH 333
           Y FP  LT+LSL  + LMEDPM  LE L  L VLKLK ++            FP L  L 
Sbjct: 771 Y-FPQNLTELSLKGSFLMEDPMVKLEMLQSLRVLKLKHSAYLGKEMICSCGGFPQLHFLK 829

Query: 334 LKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHW 384
           L  +  +E W +  G+M +L  L +  C  L+ +P  L  +  + KL+L +
Sbjct: 830 LSFLNTVERWRIEDGAMGRLRQLEIIECKRLKIVPRGLQPVTTIHKLKLGY 880

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera]

 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 108/476 (22%), Positives = 196/476 (41%), Gaps = 110/476 (23%)

Query: 4   QSEAIPTIW---------------RQIYSVMGL-----PFHLKVCYIYLCVYRPSIEIST 43
           + E  P++W               RQ+  ++ L     P++LK C++Y  ++   +EI  
Sbjct: 386 RKEKXPSVWLRVLQSISWQLNNDSRQLMEILALSYNDLPYYLKPCFLYFGLFPEDLEIPV 445

Query: 44  RQLY--------------------------QLINPSRLHSSKRRAGGTIKACYVPSIVYT 77
            +L                           +L++ S +  +++R  G IK C +  ++  
Sbjct: 446 GKLVLLWIAEGFVQQRGEESMEDVAEDFLEELVDRSMIQVAEKRYNGKIKMCRIHDLLRD 505

Query: 78  SLVLVADKTGFVRM---PHMEKESLANVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSES 134
             +  A +  F+ +    +++       +R  +   L E+  L H + + +S L+ S   
Sbjct: 506 LAMSEAKECKFLEILDSTNIDTSVTTRARRISVHSSLEEYMKLRHPNPHFRSMLHFSRCE 565

Query: 135 DHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLI-TPLLKL------ 187
           + L     ++  +  K LRVL+L        P  +  L HL+YL L  T L +L      
Sbjct: 566 ESLRREQWKSLFESLKLLRVLDLERVQTHALPKEIRELVHLRYLGLRRTGLQRLPSSVQN 625

Query: 188 -----------------------MQKLMHLNFGSITMPS-PPNNYSSSLKDLIFISAVHP 223
                                  M  L HL     ++   PP + S      +   +++ 
Sbjct: 626 FCNLQTLDIRATKVSRLPIQLWNMPGLRHLYLEKTSIAGHPPVHVSVMHLQTLSTVSIYG 685

Query: 224 SSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFS-RMIL 282
           +   PD+LG+L N++ L I G  +     +S+ L +L  L+ L+L     + + + +++L
Sbjct: 686 NQWIPDLLGKLTNLRKLGIHGYFASQTEALSRCLVKLSNLQNLQLRGTELILEPTIKLLL 745

Query: 283 SE------------YKFP------PTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNS 324
           ++             K P      P LT++ L  + L++D    L KLP L++LKL  NS
Sbjct: 746 NQPNIHKLHLSGPIEKLPDPQEIQPNLTKIILEKSLLVQDIFVILGKLPNLQMLKLLINS 805

Query: 325 -----------SFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPE 369
                       FP L  L L  ++ LEEW +  G+MP L  L+++ C  L+K+PE
Sbjct: 806 FFGKEITCSASGFPKLHGLELSELVNLEEWRVDDGAMPSLRHLVIDHCDQLKKIPE 861

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567194|ref|XP_003551806.1| PREDICTED: disease resistance protein RPP13-like [Glycine max]

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 112/460 (24%), Positives = 184/460 (40%), Gaps = 115/460 (25%)

Query: 17  SVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQ------LINPSRLHSSKRRAGGTIKACY 70
           S   LP  LK C++Y  +Y    EIS RQL Q       I P +   +       +   Y
Sbjct: 290 SYNNLPGRLKPCFLYFGIYPEDYEISARQLIQYWIAEGFIQPQKTGIADTTELEDVADFY 349

Query: 71  VPSIVYTSLVLVADKTGFVRMPHMEKESLANVKRCFI---LKDL---------------- 111
           +  +V  SLV VA           ++ S   VK C I   L+DL                
Sbjct: 350 LDELVDRSLVQVA-----------KRRSDGGVKTCRIHDLLRDLCLSESKYDKFLEVCTN 398

Query: 112 TEFFPLEH-------------SDMYLQSFLNHSSESDHLAGIDCENFC----KKFKHLRV 154
           +  F + +             SD+   +F    + S  + G D + +     K FK  RV
Sbjct: 399 SNIFTVSNTNPRRMSFHWKPDSDVSETTFNKSCTRSMFIFGRDAKTYLVPILKNFKLARV 458

Query: 155 LNLG--------SAVLDLYPPGLENLFHLKYLKL-------------------------I 181
           L           SA  DL     + + HL+YL++                         +
Sbjct: 459 LGCDMIQQVWSYSASRDL-----KRMIHLRYLRIEVEHLPDCVCSLWNLETLHVKYSGTV 513

Query: 182 TPLLKLMQKLMHLNF-GSITMPSPPNNYSSSLKDLIFISAVHPSSCTPDI-LGRLPNVQT 239
           +  +  +++L HL   G+  +P P  N   +L+ L+ +S  +P      +  G  P ++ 
Sbjct: 514 SSKIWTLKRLRHLYLMGNGKLPLPKANRMENLQTLV-LSGDYPQQIIFLLNSGIFPRLRK 572

Query: 240 LRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNT 299
           L +    S    G+  SL  L  L  LK++      +   ++L    FP  LT+++L + 
Sbjct: 573 LALRCYNSVEGPGMLPSLQRLSNLHSLKVM------RGCELLLDTNAFPSNLTKITLKDL 626

Query: 300 KLMEDP---MPTLEKLPLLEVLKLK-----------QNSSFPLLKILHLKSMLWLEEWTM 345
               DP   M TL +LP L++LK+                FP L++LH+ + + + +W +
Sbjct: 627 HAFRDPQSLMKTLGRLPNLQILKVSFCMHNDIHLDIGRGEFPQLQVLHM-TQINVRQWRL 685

Query: 346 GAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWP 385
              +MP+L  L++  C  L +LPEELW +  L  + + WP
Sbjct: 686 EKDAMPRLRHLLIEECYGLSELPEELWSMTALRLVHVSWP 725

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535589|ref|NP_001234202.1| NRC1 [Solanum lycopersicum] gi|83630761|gb|ABC26878.1| NRC1 [Solanum lycopersicum]

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 113/464 (24%), Positives = 187/464 (40%), Gaps = 89/464 (19%)

Query: 1   NYLQSEAIPTIWRQIYSVMGLPFHLKVCYIYLCVYRPSIEISTRQLY------------- 47
           N  Q  +   + R  Y V  LP+  K C++Y   +     I  R+L              
Sbjct: 385 NRDQPNSCDKLVRMSYDV--LPYDWKACFLYFGTFPRGYLIPARKLIRLWIAEGFIQYRG 442

Query: 48  -------------QLINPSRLHSSKRRAGGTIKACYVPSIVYTSLVLVA--DKTGFVRMP 92
                        +L+N + +   +R   G IK C V  ++Y      A  ++  F  + 
Sbjct: 443 DLSPECKAEEYLNELVNRNLVMVMQRTVDGQIKTCRVHDMLYEFCWQEATTEENLFHEVK 502

Query: 93  HMEKESLANV---KRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKF 149
              ++S+  V   +R  I   + EF   + S  +++SFL  S E          N  K F
Sbjct: 503 FGGEQSVREVSTHRRLCIHSSVVEFISKKPSGEHVRSFLCFSPEKIDTPPTVSANISKAF 562

Query: 150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKL---------------------- 187
             LRV +  S  ++ +      L+HL+Y+      +K+                      
Sbjct: 563 PLLRVFDTESIKINRFCKEFFQLYHLRYIAFSFDSIKVIPKHVGELWNVQTLIVNTQQIN 622

Query: 188 ---------MQKLMHL-NFGSITMPSPPNNYSSSL----KDLIFISAVHPSSCTPDILGR 233
                    M +L HL    S  +P+  N  +S      + L  +S + P SCT  +L R
Sbjct: 623 LDIQADILNMPRLRHLLTNTSAKLPALANPKTSKTTLVNQSLQTLSTIAPESCTEYVLSR 682

Query: 234 LPNVQTLRISGDLSY----HHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPP 289
            PN++ L I G ++       S +  ++  L  LE LKL+N G++ Q    +     FP 
Sbjct: 683 APNLKKLGIRGKIAKLMEPSQSVLLNNVKRLQFLENLKLINVGQIDQTQLRLPPASIFPT 742

Query: 290 TLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNS-----------SFPLLKILHLKSML 338
            L +L+L +T L  D M  L++L  L+VLKLK N+            FP L++L ++   
Sbjct: 743 KLRKLTLLDTWLEWDDMSVLKQLENLQVLKLKDNAFKGENWELNDGGFPFLQVLCIERAN 802

Query: 339 WLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLEL 382
            L  W       P+L+ L ++ C  L K+P  L    ++C L++
Sbjct: 803 -LVSWNASGDHFPRLKHLHIS-CDKLEKIPIGL---ADICSLQV 841

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551912|ref|XP_003544316.1| PREDICTED: disease resistance protein RPP13-like [Glycine max]

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 189/448 (42%), Gaps = 94/448 (20%)

Query: 17  SVMGLPFHLKVCYIYLCVYRPSIEISTRQLY----------------------------- 47
           S   LP  LK C++Y  +Y    EIS RQL                              
Sbjct: 290 SYNNLPGRLKPCFLYFGIYPEDYEISARQLIKYWIAEGFIQPQKTGIADTTTELEDVADF 349

Query: 48  ---QLINPSRLHSSKRRAGGTIKACYVPSIVYTSLVLVADKTGFVRM---PHMEKESLAN 101
              +L++ S +  +KRR+ G +K C +  ++    +  +    F+ +     ++  S  N
Sbjct: 350 YLDELVDRSLVQVAKRRSEGGVKTCRIHDLLRDLCMSESKSDKFLEVCTNSTIDTVSNTN 409

Query: 102 VKRCFI-LKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFC---KKFKHLRVLNL 157
            +R  I LK          SD+   +F    + S  + G D  +     K FK  RVL+ 
Sbjct: 410 PRRMSIHLK--------RDSDVAANTFNKSCTRSMFIFGSDRADLVPVLKNFKLARVLDC 461

Query: 158 GSAVLDLY--------PPGLENLFHLKYLKL-ITPLLKLMQKLMHLNFGSITMPSPPNNY 208
                D++        P  L+ + HL+YL++ +  L   +  L +L    +      ++ 
Sbjct: 462 -----DMFHGFSSYSVPRDLKRMIHLRYLRIKVKHLPDCVCSLWNLETLHVRYRGTVSSK 516

Query: 209 SSSLKDL--IFISAVHPSSCTPDILGRLPNVQTLRISGD-----LSYHHSGVSKSL---- 257
             +LK L  +++S             R+ N+QTL +SG      +S  +SG+   L    
Sbjct: 517 IWTLKRLRHLYLSGDGKLPVLMPKANRMENLQTLLLSGKHPQQIISLLNSGIFPRLRKLA 576

Query: 258 -------CELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMP--- 307
                  C L  LE L  ++  K+ +   +      +P  LT+++L     + DP P   
Sbjct: 577 LRLPNESCMLSSLERLSNLHSLKVIRGFELPSDTNAYPSNLTKITLDLAAFL-DPQPFLK 635

Query: 308 TLEKLPLLEVLKLKQN----------SSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLI 357
           TL +LP L++LKL  N            FP L++LH++  + +++W +   +MP+L  L+
Sbjct: 636 TLGRLPNLQILKLTPNIRDILLDIGRGEFPQLQLLHMRQ-IHVKQWRLEKHAMPRLRHLV 694

Query: 358 LNPCAYLRKLPEELWCIKNLCKLELHWP 385
           ++ C  L +LPEELW +  L  + + WP
Sbjct: 695 IDKCYRLSELPEELWSLTALRLVHVLWP 722

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495931|ref|XP_003635117.1| PREDICTED: probable disease resistance protein RDL6/RF9-like [Vitis vinifera]

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 181/451 (40%), Gaps = 107/451 (23%)

Query: 40   EISTRQLYQLINPSRLHSSKRRAGGTIKACYVPSIV---YTSLVLVAD------------ 84
            +++ R L  LI    +  +K +  G +K+C +P  +   ++S  L A             
Sbjct: 914  DVADRYLITLIGKGMVRVTKNKLNGNVKSCLLPDALRRYWSSKALQATFLQVGTNTKSES 973

Query: 85   --KTGFVR--MPHMEKESLANVKRCFILKDLTEFFPLEHSDMYLQ--SFLNHSSESDHLA 138
               TG +R    H++K    +V    I  D  +        +Y +  SFL+  ++     
Sbjct: 974  SLGTGMIRRLTDHLDK---GDVSFDHIHGD-HKTISASVQPLYREVVSFLSFDTQEGSKP 1029

Query: 139  GIDCENFC-----------------------------KKFKHLRVLNLGSAVLDLYPPGL 169
            G D  NF                               K   LR L L S  LD+ P  +
Sbjct: 1030 GEDIGNFLHRCISSSCLLLLRVLDLENVFKPKFPEALGKLTRLRYLGLRSTFLDVLPSFV 1089

Query: 170  ENLFHLKYLKL----ITPL---LKLMQKLMHLNFG----SITMPSPPNNYSSSLKDLIFI 218
              L  L+ L +    IT L   +  MQ+L  L       S  MP P    SS+L+ L+ +
Sbjct: 1090 NKLQSLQALDVKHTNITTLPSPIWNMQQLRQLYLNERCHSKVMPQPSVGSSSTLRVLVGL 1149

Query: 219  SAVHPSSCTPDILGRLPNVQTLRISGDL-SYHHSGVSKSLCELHKLECLKLVN---EGKM 274
                 +  T D L +  N++ L ++  L S     V + + +L+ LE L+L +   E + 
Sbjct: 1150 FVDEETPVT-DGLDQFINLRKLGLTCHLPSSQQEAVVEWVQKLNNLESLRLKSIDEENQF 1208

Query: 275  WQFSRMILSEY-------------------KFPPTLTQLSLSNTKLMEDPMPTLEKLPLL 315
            W      L+ +                   +FP +L +L+LS ++L EDPM TL+KLP L
Sbjct: 1209 WDLDLKPLAHHVNLSCLYLLGRLKNPSVGSEFPHSLIELTLSGSELEEDPMQTLDKLPNL 1268

Query: 316  EVLKLKQNS-----------SFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYL 364
            +VL+   NS            FP L++L L  +  LEEW +  G++  L  L +  C  L
Sbjct: 1269 KVLRFLANSYLGKNMGCSSGGFPQLQVLKLWKLEQLEEWNVDEGALQALWDLDIRSCKRL 1328

Query: 365  RKLPEEL-------WCIKNLCKLELHWPQPH 388
            + LPE L         + ++C     W + H
Sbjct: 1329 KMLPEALRHRARLKLKLTDMCSQFASWKEDH 1359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081343|emb|CBI17689.3| unnamed protein product [Vitis vinifera]

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 181/451 (40%), Gaps = 107/451 (23%)

Query: 40   EISTRQLYQLINPSRLHSSKRRAGGTIKACYVPSIV---YTSLVLVAD------------ 84
            +++ R L  LI    +  +K +  G +K+C +P  +   ++S  L A             
Sbjct: 867  DVADRYLITLIGKGMVRVTKNKLNGNVKSCLLPDALRRYWSSKALQATFLQVGTNTKSES 926

Query: 85   --KTGFVR--MPHMEKESLANVKRCFILKDLTEFFPLEHSDMYLQ--SFLNHSSESDHLA 138
               TG +R    H++K    +V    I  D  +        +Y +  SFL+  ++     
Sbjct: 927  SLGTGMIRRLTDHLDK---GDVSFDHIHGD-HKTISASVQPLYREVVSFLSFDTQEGSKP 982

Query: 139  GIDCENFC-----------------------------KKFKHLRVLNLGSAVLDLYPPGL 169
            G D  NF                               K   LR L L S  LD+ P  +
Sbjct: 983  GEDIGNFLHRCISSSCLLLLRVLDLENVFKPKFPEALGKLTRLRYLGLRSTFLDVLPSFV 1042

Query: 170  ENLFHLKYLKL----ITPL---LKLMQKLMHLNFG----SITMPSPPNNYSSSLKDLIFI 218
              L  L+ L +    IT L   +  MQ+L  L       S  MP P    SS+L+ L+ +
Sbjct: 1043 NKLQSLQALDVKHTNITTLPSPIWNMQQLRQLYLNERCHSKVMPQPSVGSSSTLRVLVGL 1102

Query: 219  SAVHPSSCTPDILGRLPNVQTLRISGDL-SYHHSGVSKSLCELHKLECLKLVN---EGKM 274
                 +  T D L +  N++ L ++  L S     V + + +L+ LE L+L +   E + 
Sbjct: 1103 FVDEETPVT-DGLDQFINLRKLGLTCHLPSSQQEAVVEWVQKLNNLESLRLKSIDEENQF 1161

Query: 275  WQFSRMILSEY-------------------KFPPTLTQLSLSNTKLMEDPMPTLEKLPLL 315
            W      L+ +                   +FP +L +L+LS ++L EDPM TL+KLP L
Sbjct: 1162 WDLDLKPLAHHVNLSCLYLLGRLKNPSVGSEFPHSLIELTLSGSELEEDPMQTLDKLPNL 1221

Query: 316  EVLKLKQNS-----------SFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYL 364
            +VL+   NS            FP L++L L  +  LEEW +  G++  L  L +  C  L
Sbjct: 1222 KVLRFLANSYLGKNMGCSSGGFPQLQVLKLWKLEQLEEWNVDEGALQALWDLDIRSCKRL 1281

Query: 365  RKLPEEL-------WCIKNLCKLELHWPQPH 388
            + LPE L         + ++C     W + H
Sbjct: 1282 KMLPEALRHRARLKLKLTDMCSQFASWKEDH 1312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46389753|dbj|BAD15107.1| hypothetical protein [Nicotiana tabacum]

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 136/320 (42%), Gaps = 56/320 (17%)

Query: 96  KESLANVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVL 155
           K  LA  +R  I   + EF   + S  +++SFL+ S +   +  +D     K F  LRV 
Sbjct: 49  KRELATYRRLCIHSSVLEFISTKPSGEHVRSFLSFSLKKIEMPSVDIPTIPKGFPLLRVF 108

Query: 156 NLGSAVLDLYPPGLENLFHLKYLKLITPLLKL---------------------------- 187
           ++ S     +      L+HL+Y+   +  +K+                            
Sbjct: 109 DVESINFSRFSKEFFRLYHLRYIAFSSDTIKIIPKHIGELWNIQTLIINTQQRSLDIQAN 168

Query: 188 ---MQKLMHLNFGS-ITMPSPPNNYSSSL----KDLIFISAVHPSSCTPDILGRLPNVQT 239
              M +L HL+  S   +P P    SS +    + L  +S + P SCT ++  R PN++ 
Sbjct: 169 IWNMARLRHLHTNSSAKLPLPVTPRSSKVPLVNQSLQTLSTIAPESCTEEVFARTPNLKK 228

Query: 240 LRISGDLSY---HHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSL 296
           L I G ++     +  + K++ +L  LE LKL+N+         +   Y FP  L +LSL
Sbjct: 229 LGIRGKIAVLLEPNKSLLKNVKKLEYLENLKLINDSSQTGKGLRLPPSYIFPTKLRKLSL 288

Query: 297 SNTKLMEDPMPTLEKLPLLEVLKLKQN--------SSFPLLKILHLKSMLWLEE-----W 343
            +T L  + M  L +L  LEVLKL +N        S      +L    +LW+E      W
Sbjct: 289 VDTWLEWNDMSILGQLEHLEVLKLIENGFMGECWESVGGFCSLL----VLWIERTDLVSW 344

Query: 344 TMGAGSMPKLESLILNPCAY 363
              A   P+L+ L+L  C +
Sbjct: 345 KASADHFPRLKHLVLICCDH 364

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147795782|emb|CAN61050.1| hypothetical protein VITISV_023621 [Vitis vinifera]

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 173/427 (40%), Gaps = 100/427 (23%)

Query: 40   EISTRQLYQLINPSRLHSSKRRAGGTIKACYVPSIV---YTSLVLVAD------------ 84
            +++ R L  LI    +  +K +  G +K+C +P  +   ++S  L A             
Sbjct: 914  DVADRYLITLIGKGMVRVTKNKLNGNVKSCLLPDALRRYWSSKALQATFLQVGTNTKSES 973

Query: 85   --KTGFVR--MPHMEKESLANVKRCFILKDLTEFFPLEHSDMYLQ--SFLNHSSESDHLA 138
               TG +R    H++K    +V    I  D  +        +Y +  SFL+  ++     
Sbjct: 974  SLGTGMIRRLTDHLDK---GDVSFDHIHGD-XKTISASVQPLYREVVSFLSFDTQEGSKP 1029

Query: 139  GIDCENFC-----------------------------KKFKHLRVLNLGSAVLDLYPPGL 169
            G D  NF                               K   LR L L S  LD+ P  +
Sbjct: 1030 GEDIGNFLHRCISSSCLLLLRVLDLENVFKPKFPEALGKLTRLRYLGLRSTFLDVLPSFV 1089

Query: 170  ENLFHLKYLKL----ITPL---LKLMQKLMHLNFG----SITMPSPPNNYSSSLKDLIFI 218
              L  L+ L +    IT L   +  MQ+L  L       S  MP P    SS+L+ L+ +
Sbjct: 1090 NKLQSLQALDVKHTNITTLPSPIWNMQQLRQLYLNERCHSKVMPQPSVGSSSTLRVLVGL 1149

Query: 219  SAVHPSSCTPDILGRLPNVQTLRISGDL-SYHHSGVSKSLCELHKLECLKLVN---EGKM 274
                 +  T D L +  N++ L ++  L S     V + + +L+ LE L+L +   E + 
Sbjct: 1150 FVDEETPVT-DGLDQFINLRKLGLTCHLPSSQQEAVVEWVQKLNNLESLRLKSIDEENQF 1208

Query: 275  WQFSRMILSEY-------------------KFPPTLTQLSLSNTKLMEDPMPTLEKLPLL 315
            W      L+ +                    FP +L +L+LS ++L EDPM TL+KLP L
Sbjct: 1209 WDLDLKPLAHHVNLSCLYLLGRLKNPSVGSXFPHSLIELTLSGSELEEDPMQTLDKLPNL 1268

Query: 316  EVLKLKQNS-----------SFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYL 364
            +VL+   NS            FP L++L L  +  LEEW +  G++  L  L +  C  L
Sbjct: 1269 KVLRFLANSYLGKNMGCSSGGFPQLQVLKLWKLEQLEEWNVDEGALQALWDLDIRSCKRL 1328

Query: 365  RKLPEEL 371
            + LPE L
Sbjct: 1329 KMLPEAL 1335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
TAIR|locus:2025916	906	AT1G59780 "AT1G59780" [Arabido	0.265	0.121	0.303	1.9e-08
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.245	0.112	0.292	1.3e-06
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.245	0.112	0.292	1.7e-06
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.245	0.113	0.274	2.2e-06
TAIR|locus:504956483	847	AT3G46730 [Arabidopsis thalian	0.720	0.353	0.218	1.6e-05
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.250	0.102	0.294	3.5e-05
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.250	0.102	0.294	3.5e-05
TAIR|locus:2075170	835	RPP13 "RECOGNITION OF PERONOSP	0.315	0.156	0.262	0.00021
TAIR|locus:2011982	857	AT1G50180 [Arabidopsis thalian	0.236	0.114	0.292	0.00022
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.250	0.091	0.313	0.00042

TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
 Identities = 37/122 (30%), Positives = 56/122 (45%)

Query:   287 FPPTLTQLSLSNTKLMEDPMPTXXXXXXXXXXXXXQNS-----------SFPLLKILHLK 335
             FP  LT +SL    L EDPMPT              N+            FP L  L + 
Sbjct:   751 FPSHLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTGGGFPPLHRLEIW 810

Query:   336 SMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQPHYRCNRKS 395
              +  LEEW +  GSMP L +L +  C  L+++P+ L  I +L +L +   +  ++  + S
Sbjct:   811 GLDALEEWIVEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAIRTNEKVFQ-KKVS 869

Query:   396 RG 397
             +G
Sbjct:   870 KG 871

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
 Identities = 33/113 (29%), Positives = 53/113 (46%)

Query:   281 ILSEYKFPPTLTQLSLSNTKLMEDPMPTXXXXXXXXXXXXXQNS-----------SFPLL 329
             I  +++FPP L  L L    + EDPMP              + +            FP L
Sbjct:   762 IPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVCSKGGFPQL 821

Query:   330 KILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLEL 382
              ++ +     LEEW +  GSMP L +L ++ C  L++LP+ L  I +L +L++
Sbjct:   822 CVIEISKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKI 874

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
 Identities = 33/113 (29%), Positives = 52/113 (46%)

Query:   281 ILSEYKFPPTLTQLSLSNTKLMEDPMPTXXXXXXXXXXXXXQNS-----------SFPLL 329
             I  +++FPP L  + L +  + EDPMP                +            FP L
Sbjct:   762 IPDQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVCSKGGFPQL 821

Query:   330 KILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLEL 382
               L +     LEEW +  GSMP L +L ++ C  L++LP+ L  I +L +L++
Sbjct:   822 CALGISGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKI 874

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
 Identities = 31/113 (27%), Positives = 51/113 (45%)

Query:   281 ILSEYKFPPTLTQLSLSNTKLMEDPMPTXXXXXXXXXXXXXQNS-----------SFPLL 329
             I  +++ PP +  + L    + EDPMP              + +            FP L
Sbjct:   753 IPDQHQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVCSKGGFPQL 812

Query:   330 KILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLEL 382
             + L +     LEEW +  GSMP L  LI++ C  L +LP+ L  + +L +L++
Sbjct:   813 RALQISEQSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKI 865

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
 Identities = 72/329 (21%), Positives = 130/329 (39%)

Query:    48 QLINPSRLHSSKRRAGGTIKACYVPSIVYTSLVLVADKTGFVRMPHMEKESLANVKRCFI 107
             +L++ S L  ++R   G + +C +  ++    +  A +  FV + + EK+  +++ R  +
Sbjct:   466 ELVDRS-LVKAERIERGKVMSCRIHDLLRDLAIKKAKELNFVNV-YNEKQHSSDICRREV 523

Query:   108 LKDLTEFFPL--EHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNL------GS 159
             +  L   + L     +  ++SFL    E      ++  N   K K LRVLN+        
Sbjct:   524 VHHLMNDYYLCDRRVNKRMRSFL-FIGERRGFGYVNTTNL--KLKLLRVLNMEGLLFVSK 580

Query:   160 AVLDLYPPGLENLFHLKYLKLITPLLKLMQ-KLMHLNFGSITMPS--PPNNYSSSLKDLI 216
              + +  P  +  L HL+YL +    + ++   + +L F      S   P  Y++ L  L 
Sbjct:   581 NISNTLPDVIGELIHLRYLGIADTYVSILPASISNLRFLQTLDASGNDPFQYTTDLSKLT 640

Query:   217 FISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSXXXXXXXXXXXXVNEGKMWQ 276
              +  V        ++G   N+QTLR     S+     SK             + +   W 
Sbjct:   641 SLRHVIGKFVGECLIGEGVNLQTLRSISSYSW-----SKLNHELLRNLQDLEIYDHSKWV 695

Query:   277 FSRMILSEYKFPPTLTQLSL-SNTKLMEDPMPTXXXXXXXXXXXXXQNSSFPLLKILHLK 335
               R +      P      S   N ++++  M                + +FP L+ L L 
Sbjct:   696 DQRRV------PLNFVSFSKPKNLRVLKLEMRNFKLSSESRTTIGLVDVNFPSLESLTLV 749

Query:   336 SMLWLEEWTMGA-GSMPKLESLILNPCAY 363
                 LEE +M A   +P+LE L+L  C Y
Sbjct:   750 GTT-LEENSMPALQKLPRLEDLVLKDCNY 777

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
 Identities = 35/119 (29%), Positives = 52/119 (43%)

Query:   282 LSEYKFPPTLTQLSLSNTKLMEDPMPTXXXX-----------XXXXXXXXXQNSSFPLLK 330
             L +   P  LT +SL    L +DP+PT                            FP L+
Sbjct:   858 LPDEHLPSHLTSISLFFCCLEKDPLPTLGRLVYLKELQLGFRTFSGRIMVCSGGGFPQLQ 917

Query:   331 ILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEEL---WCIKNLCKLELHWPQ 386
              L +  +   EEW +  GSMP L +L ++ C  L+KLP+ L   + +KNL K+   W +
Sbjct:   918 KLSIYRLEEWEEWIVEQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLKNL-KISERWKE 975

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
 Identities = 35/119 (29%), Positives = 52/119 (43%)

Query:   282 LSEYKFPPTLTQLSLSNTKLMEDPMPTXXXX-----------XXXXXXXXXQNSSFPLLK 330
             L +   P  LT +SL    L +DP+PT                            FP L+
Sbjct:   858 LPDEHLPSHLTSISLFFCCLEKDPLPTLGRLVYLKELQLGFRTFSGRIMVCSGGGFPQLQ 917

Query:   331 ILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEEL---WCIKNLCKLELHWPQ 386
              L +  +   EEW +  GSMP L +L ++ C  L+KLP+ L   + +KNL K+   W +
Sbjct:   918 KLSIYRLEEWEEWIVEQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLKNL-KISERWKE 975

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 0.00021, Sum P(3) = 0.00021
 Identities = 37/141 (26%), Positives = 67/141 (47%)

Query:    40 EISTRQLYQLINPSRLHSSKRRAGGTIKACYVPSIVYTSLVLVADKTGFVRM--PHMEKE 97
             +++   + +LI+ S L +  RR  G + +C +  ++    +  + +  FV +   H+ + 
Sbjct:   458 DVARYYIEELIDRSLLEAV-RRERGKVMSCRIHDLLRDVAIKKSKELNFVNVYNDHVAQH 516

Query:    98 SLANVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNL 157
             S    +R  +      +   +  +  ++SFL +  E DHL G+D E      K LRVL+ 
Sbjct:   517 SSTTCRREVVHHQFKRYSSEKRKNKRMRSFL-YFGEFDHLVGLDFETL----KLLRVLDF 571

Query:   158 GSAVLDLYPPGLENLFHLKYL 178
             GS  L     G  +L HL+YL
Sbjct:   572 GSLWLPFKING--DLIHLRYL 590

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

TAIR|locus:2011982 AT1G50180 [Arabidopsis thaliana (taxid:3702)]

 Score = 90 (36.7 bits), Expect = 0.00022, Sum P(3) = 0.00022
 Identities = 29/99 (29%), Positives = 46/99 (46%)

Query:   284 EYKFPPTLTQLSLSNTKLMEDPMPTXXXXXXXXXXXXXQNSSFPLLKILHLKSMLWLEEW 343
             E  F   L  L L    L++DP                + S F   K+   K++  LEEW
Sbjct:   726 EQSFSSDLGALRLWQCGLVDDPFMVLEKLPNLKILQLFEGS-FVGSKLCCSKNLENLEEW 784

Query:   344 TMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLEL 382
             T+  G+M +L ++ L  C  L+ +PE    +KNL ++E+
Sbjct:   785 TVEDGAMMRLVTVELKCCNKLKSVPEGTRFLKNLQEVEI 823

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 0.00042, Sum P(2) = 0.00042
 Identities = 36/115 (31%), Positives = 50/115 (43%)

Query:   282 LSEYKFPPTLTQLSLSNTKLMEDPMPTXXXXXXXXXXXXXQ---------NSSFPLLKIL 332
             L +   P  LT +SL    L EDP+PT             +            FP L  L
Sbjct:   864 LPDEHLPSHLTAISLKKCGL-EDPIPTLERLVHLKELSLSELCGRIMVCTGGGFPQLHKL 922

Query:   333 HLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELH-WPQ 386
              L  +  LEEW +  GSMP+L +L +  C  L+KLP     ++NL   E+  W +
Sbjct:   923 DLSELDGLEEWIVEDGSMPRLHTLEIRRCLKLKKLPNGFPQLQNLHLTEVEEWEE 977

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017592001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (858 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	415
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.91
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.77
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.77
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.74
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.72
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.7
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.66
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.64
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.49
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.45
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.43
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.4
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.39
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.36
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.36
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.33
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.26
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.22
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.17
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.06
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.94
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.74
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.74
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.7
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.62
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.62
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.62
KOG4341	483	consensus F-box protein containing LRR [General fu	98.6
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.54
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.47
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.45
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.45
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.41
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.34
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.19
PLN03150	623	hypothetical protein; Provisional	98.12
PLN03150	623	hypothetical protein; Provisional	98.11
KOG4341	483	consensus F-box protein containing LRR [General fu	98.1
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.06
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.97
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.78
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.73
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.66
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.61
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.56
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.54
PRK15386	426	type III secretion protein GogB; Provisional	97.54
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.46
PRK15386	426	type III secretion protein GogB; Provisional	97.43
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	97.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.28
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.26
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.92
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.36
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.97
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.95
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.81
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.65
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.55
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.19
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.12
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.12
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.66
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.82
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.97
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.74
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.4
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.1
smart00370	26	LRR Leucine-rich repeats, outliers.	87.7
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.7

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-34  Score=296.04  Aligned_cols=345  Identities=26%  Similarity=0.297  Sum_probs=248.3

Q ss_pred             hhcccCCCccchHHHHhhcccCCCCceechhhHHH---------------------------hhcCCCeeeeecCCCCce
Q 043839           14 QIYSVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQ---------------------------LINPSRLHSSKRRAGGTI   66 (415)
Q Consensus        14 ~~lSY~~L~~~lk~cfl~~~~fp~~~~i~~~~Li~---------------------------L~~~~li~~~~~~~~~~~   66 (415)
                      +++|||+||+++|.||+|||+|||||+|+++.|+.                           |+.+++++..+..  ++.
T Consensus       401 LklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~  478 (889)
T KOG4658|consen  401 LKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRK  478 (889)
T ss_pred             hhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cce
Confidence            45999999999999999999999999999999999                           6666666654432  677


Q ss_pred             eEEEeChHHHHHHHHHhh-----hcCceEEcC-----CCCC-CCCceeEEEEEeCCCCCccCCCC-CCceeEEEeecCCC
Q 043839           67 KACYVPSIVYTSLVLVAD-----KTGFVRMPH-----MEKE-SLANVKRCFILKDLTEFFPLEHS-DMYLQSFLNHSSES  134 (415)
Q Consensus        67 ~~~~mhdli~~l~~~~~~-----~~~~~~~~~-----~~~~-~~~~~r~l~l~~~~~~~~~~~~~-~~~Lr~L~~~~~~~  134 (415)
                      .+|+|||++||||.++++     +++++....     ..+. ....+||+++. ++....++... ++.++||.+.++..
T Consensus       479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~-~~~~~~~~~~~~~~~L~tLll~~n~~  557 (889)
T KOG4658|consen  479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM-NNKIEHIAGSSENPKLRTLLLQRNSD  557 (889)
T ss_pred             eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe-ccchhhccCCCCCCccceEEEeecch
Confidence            899999999999999999     666444432     1111 56778999999 98888888888 88999999999863


Q ss_pred             ccccccchHHHhccCCcccEEEcCCcc-cccCcccccCccCCceEecCc-------ccccccccCcEEEecCCCCCCCCC
Q 043839          135 DHLAGIDCENFCKKFKHLRVLNLGSAV-LDLYPPGLENLFHLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSPPN  206 (415)
Q Consensus       135 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p  206 (415)
                      ..  ..+...+|..++.|++||+++|. +..+|+.|++|.|||||++++       .+++++++|.+|++..+.....+|
T Consensus       558 ~l--~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~  635 (889)
T KOG4658|consen  558 WL--LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP  635 (889)
T ss_pred             hh--hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc
Confidence            11  45567889999999999999876 669999999999999999999       677889999999998665555566


Q ss_pred             CcccCccccceeccccCC----CCCccccCCCCCCCeEEEecccC-----------------------cchhcHHHhhhc
Q 043839          207 NYSSSLKDLIFISAVHPS----SCTPDILGRLPNVQTLRISGDLS-----------------------YHHSGVSKSLCE  259 (415)
Q Consensus       207 ~~i~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~-----------------------~~~~~~~~~l~~  259 (415)
                      .....+++|++|.+....    ......+..+.+|+.+.+.....                       ......+.++..
T Consensus       636 ~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~  715 (889)
T KOG4658|consen  636 GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGS  715 (889)
T ss_pred             chhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccc
Confidence            666679999999987765    44455566777777777755431                       011223345566


Q ss_pred             cCCCcEEEeecCcc---c---------cc---cc------cc-cc----CCCCCCCCceEEEEEccccCCCCchhhcCCC
Q 043839          260 LHKLECLKLVNEGK---M---------WQ---FS------RM-IL----SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLP  313 (415)
Q Consensus       260 l~~L~~L~l~~~~~---i---------l~---~l------~L-lp----~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~  313 (415)
                      +.+|+.|.+..++.   .         +.   .+      +. .|    |. .+|++|+.|.+..|....++++....+.
T Consensus       716 l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~-~f~~~L~~l~l~~~~~~e~~i~~~k~~~  794 (889)
T KOG4658|consen  716 LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL-LFAPHLTSLSLVSCRLLEDIIPKLKALL  794 (889)
T ss_pred             ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh-hccCcccEEEEecccccccCCCHHHHhh
Confidence            77888888776221   0         00   00      00 12    22 3458888888888877667777666666


Q ss_pred             CCCeEeeccCCCCCcccEE-EeccCCCccceEEcCCCccCccEEEEecCcccCCCh
Q 043839          314 LLEVLKLKQNSSFPLLKIL-HLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLP  368 (415)
Q Consensus       314 ~L~~L~l~~~~~~~~L~~L-~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp  368 (415)
                      .++.+.+    .|.+++.+ .+.+.+.+..+-..--.++.|+.+.+..||.++.+|
T Consensus       795 ~l~~~i~----~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P  846 (889)
T KOG4658|consen  795 ELKELIL----PFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLP  846 (889)
T ss_pred             hcccEEe----cccccccceeeecCCCCceeEecccCccchhheehhcCcccccCc
Confidence            6665443    45555555 355555555444433444557777777776665544

>PLN03210 Resistant to P

Probab=99.97  E-value=6.7e-31  Score=285.26  Aligned_cols=353  Identities=16%  Similarity=0.099  Sum_probs=224.4

Q ss_pred             hhcccCCCcc-chHHHHhhcccCCCCceechhhHHH-------------hhcCCCeeeeecCCCCceeEEEeChHHHHHH
Q 043839           14 QIYSVMGLPF-HLKVCYIYLCVYRPSIEISTRQLYQ-------------LINPSRLHSSKRRAGGTIKACYVPSIVYTSL   79 (415)
Q Consensus        14 ~~lSY~~L~~-~lk~cfl~~~~fp~~~~i~~~~Li~-------------L~~~~li~~~~~~~~~~~~~~~mhdli~~l~   79 (415)
                      +++||++|++ ..|.||++||+||.+..++....+.             |++++|++...       ..++|||++|+||
T Consensus       426 L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~  498 (1153)
T PLN03210        426 LRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMG  498 (1153)
T ss_pred             HHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcC-------CeEEhhhHHHHHH
Confidence            4589999987 6999999999999997765433322             99999998642       2489999999999


Q ss_pred             HHHhhhcC-------ceEEcCC------CCCCCCceeEEEEEeCCCCCcc--CC-CC--CCceeEEEeec----------
Q 043839           80 VLVADKTG-------FVRMPHM------EKESLANVKRCFILKDLTEFFP--LE-HS--DMYLQSFLNHS----------  131 (415)
Q Consensus        80 ~~~~~~~~-------~~~~~~~------~~~~~~~~r~l~l~~~~~~~~~--~~-~~--~~~Lr~L~~~~----------  131 (415)
                      +.+++++.       +....++      .......++.+++. -.....+  .. .+  +++|+.|.++.          
T Consensus       499 r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~-~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~  577 (1153)
T PLN03210        499 KEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLD-IDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVR  577 (1153)
T ss_pred             HHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEec-cCccceeeecHHHHhcCccccEEEEecccccccccce
Confidence            99997653       1111000      00023445555554 2222211  11 11  55555555543          


Q ss_pred             ---------------------CCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc-------c
Q 043839          132 ---------------------SESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT-------P  183 (415)
Q Consensus       132 ---------------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------~  183 (415)
                                           +..    .. +|..+ .+.+|++|++.++.+..+|..+..+++|++|++++       +
T Consensus       578 ~~lp~~~~~lp~~Lr~L~~~~~~l----~~-lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip  651 (1153)
T PLN03210        578 WHLPEGFDYLPPKLRLLRWDKYPL----RC-MPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP  651 (1153)
T ss_pred             eecCcchhhcCcccEEEEecCCCC----CC-CCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC
Confidence                                 322    11 12222 35678888888888878888888888888888876       5


Q ss_pred             cccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccC
Q 043839          184 LLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELH  261 (415)
Q Consensus       184 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~  261 (415)
                      .++.+++|++|++++|.....+|..++.+++|+.|++.+|.  ..+|..+ ++++|+.|.+++|.  ....+|..   ..
T Consensus       652 ~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~--~L~~~p~~---~~  725 (1153)
T PLN03210        652 DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS--RLKSFPDI---ST  725 (1153)
T ss_pred             ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC--Cccccccc---cC
Confidence            66778888888888777778888888888888888888876  6666655 67788888887772  33333321   23


Q ss_pred             CCcEEEeecCccc-----------cccccc--------------cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCC
Q 043839          262 KLECLKLVNEGKM-----------WQFSRM--------------IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLL  315 (415)
Q Consensus       262 ~L~~L~l~~~~~i-----------l~~l~L--------------lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L  315 (415)
                      +|+.|++++ +.+           |..|.+              ++ .....|++|+.|++++|.....+|..++++++|
T Consensus       726 nL~~L~L~~-n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L  804 (1153)
T PLN03210        726 NISWLDLDE-TAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL  804 (1153)
T ss_pred             CcCeeecCC-CccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCC
Confidence            444444444 211           000000              00 001112456666666665444555556666666


Q ss_pred             CeEeecc---------CCCCCcccEEEeccCC--------------------CccceEEcCCCccCccEEEEecCcccCC
Q 043839          316 EVLKLKQ---------NSSFPLLKILHLKSML--------------------WLEEWTMGAGSMPKLESLILNPCAYLRK  366 (415)
Q Consensus       316 ~~L~l~~---------~~~~~~L~~L~l~~~~--------------------~l~~l~~~~~~l~~L~~L~l~~c~~~~~  366 (415)
                      +.|++++         ...+++|+.|++++|.                    .++.+|..++.+++|+.|++++|+.+..
T Consensus       805 ~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~  884 (1153)
T PLN03210        805 EHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR  884 (1153)
T ss_pred             CEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc
Confidence            6666654         1123444444444443                    4455666778889999999999999988


Q ss_pred             ChhhhcCCCCCCeEEEecCCh
Q 043839          367 LPEELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       367 lp~~l~~l~~L~~L~l~~c~~  387 (415)
                      +|..+..++.|+.+++++|+.
T Consensus       885 l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        885 VSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             cCcccccccCCCeeecCCCcc
Confidence            998888899999999999974

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=1.9e-24  Score=233.83  Aligned_cols=278  Identities=23%  Similarity=0.197  Sum_probs=165.1

Q ss_pred             CceeEEEEEeCCCCC-ccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCccCCce
Q 043839          100 ANVKRCFILKDLTEF-FPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLFHLKY  177 (415)
Q Consensus       100 ~~~r~l~l~~~~~~~-~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~  177 (415)
                      ..+|++.+. ++... .++....++|++|.+.++..    ....+..+.++++|++|++++|.+. .+|..++++++|++
T Consensus       118 ~~L~~L~Ls-~n~l~~~~p~~~l~~L~~L~Ls~n~~----~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  192 (968)
T PLN00113        118 SSLRYLNLS-NNNFTGSIPRGSIPNLETLDLSNNML----SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF  192 (968)
T ss_pred             CCCCEEECc-CCccccccCccccCCCCEEECcCCcc----cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence            445555555 43332 12222256666666666655    2334556777777777777777766 67777777777777


Q ss_pred             EecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccC
Q 043839          178 LKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLS  247 (415)
Q Consensus       178 L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~  247 (415)
                      |++++        ..++++++|++|++++|.....+|..++.+++|++|++.+|.  +.+|..++.+++|+.|++++|  
T Consensus       193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n--  270 (968)
T PLN00113        193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN--  270 (968)
T ss_pred             eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC--
Confidence            77766        445667777777777666666777777777777777777776  566667777777777777776  


Q ss_pred             cchhcHHHhhhccCCCcEEEeecCccc-------------ccccc-----c---cc-CCCCCCCCceEEEEEccccCCCC
Q 043839          248 YHHSGVSKSLCELHKLECLKLVNEGKM-------------WQFSR-----M---IL-SEYKFPPTLTQLSLSNTKLMEDP  305 (415)
Q Consensus       248 ~~~~~~~~~l~~l~~L~~L~l~~~~~i-------------l~~l~-----L---lp-~~~~lp~~L~~L~l~~~~l~~~~  305 (415)
                      ...+.+|.++..+++|+.|++++ +.+             |+.|.     +   +| ++..+ ++|+.|++++|.+.+..
T Consensus       271 ~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~  348 (968)
T PLN00113        271 KLSGPIPPSIFSLQKLISLDLSD-NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEI  348 (968)
T ss_pred             eeeccCchhHhhccCcCEEECcC-CeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcC
Confidence            45556666777777777777766 311             11000     0   23 33344 44444444444444444


Q ss_pred             chhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCC
Q 043839          306 MPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIK  375 (415)
Q Consensus       306 ~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~  375 (415)
                      |..++.+++|+.|++++          ...+++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..+..++
T Consensus       349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~  428 (968)
T PLN00113        349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP  428 (968)
T ss_pred             ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC
Confidence            44444444444444443          11233455555555533334455556666666666666666666666666666


Q ss_pred             CCCeEEEecCC
Q 043839          376 NLCKLELHWPQ  386 (415)
Q Consensus       376 ~L~~L~l~~c~  386 (415)
                      +|+.|++++|.
T Consensus       429 ~L~~L~Ls~N~  439 (968)
T PLN00113        429 LVYFLDISNNN  439 (968)
T ss_pred             CCCEEECcCCc
Confidence            77777766553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.91  E-value=5.9e-24  Score=229.98  Aligned_cols=276  Identities=22%  Similarity=0.229  Sum_probs=145.5

Q ss_pred             CceeEEEEEeCCCCCc-cCCCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCccCC
Q 043839          100 ANVKRCFILKDLTEFF-PLEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLFHL  175 (415)
Q Consensus       100 ~~~r~l~l~~~~~~~~-~~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L  175 (415)
                      .+++.+.+. .+.... ++...  +++|++|.+.++...   ..++...+..+++|++|++++|.++ .+|.  +.+++|
T Consensus        69 ~~v~~L~L~-~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~---~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L  142 (968)
T PLN00113         69 SRVVSIDLS-GKNISGKISSAIFRLPYIQTINLSNNQLS---GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL  142 (968)
T ss_pred             CcEEEEEec-CCCccccCChHHhCCCCCCEEECCCCccC---CcCChHHhccCCCCCEEECcCCccccccCc--cccCCC
Confidence            356666666 443321 22222  677777777766552   2334444556666666666666655 4442  345556


Q ss_pred             ceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecc
Q 043839          176 KYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGD  245 (415)
Q Consensus       176 ~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~  245 (415)
                      ++|++++        ..++++++|++|++++|.....+|..++++++|++|++.+|.  +.+|..++++++|+.|++++|
T Consensus       143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  222 (968)
T PLN00113        143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN  222 (968)
T ss_pred             CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence            6665555        234555555555555555555555555555555555555555  445555555555555555555


Q ss_pred             cCcchhcHHHhhhccCCCcEEEeecCccc-------------cccc-----cc---cc-CCCCCCCCceEEEEEccccCC
Q 043839          246 LSYHHSGVSKSLCELHKLECLKLVNEGKM-------------WQFS-----RM---IL-SEYKFPPTLTQLSLSNTKLME  303 (415)
Q Consensus       246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~i-------------l~~l-----~L---lp-~~~~lp~~L~~L~l~~~~l~~  303 (415)
                        ...+.+|..++.+++|++|++++ +.+             |+.|     ++   +| .+..+ ++|++|++++|.+.+
T Consensus       223 --~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        223 --NLSGEIPYEIGGLTSLNHLDLVY-NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL-QKLISLDLSDNSLSG  298 (968)
T ss_pred             --ccCCcCChhHhcCCCCCEEECcC-ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhc-cCcCEEECcCCeecc
Confidence              34444555555555555555554 210             0000     11   34 44455 555555555555555


Q ss_pred             CCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcC
Q 043839          304 DPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWC  373 (415)
Q Consensus       304 ~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~  373 (415)
                      ..|..++.+++|+.|++++          ...+++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..+..
T Consensus       299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~  378 (968)
T PLN00113        299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS  378 (968)
T ss_pred             CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence            5555555555555555544          223455555555555433345555555555666666555555555555555


Q ss_pred             CCCCCeEEEecC
Q 043839          374 IKNLCKLELHWP  385 (415)
Q Consensus       374 l~~L~~L~l~~c  385 (415)
                      +++|+.|++++|
T Consensus       379 ~~~L~~L~l~~n  390 (968)
T PLN00113        379 SGNLFKLILFSN  390 (968)
T ss_pred             cCCCCEEECcCC
Confidence            555666655554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=2e-23  Score=199.53  Aligned_cols=272  Identities=19%  Similarity=0.158  Sum_probs=181.0

Q ss_pred             CceeEEEEEeCCCCCccCCCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCce
Q 043839          100 ANVKRCFILKDLTEFFPLEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKY  177 (415)
Q Consensus       100 ~~~r~l~l~~~~~~~~~~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~  177 (415)
                      .+..|+++. .+....+.+..  .+.||++.+.++....  ..+ |..+..+..|.+|||++|.+..+|..+...+++-+
T Consensus        55 qkLEHLs~~-HN~L~~vhGELs~Lp~LRsv~~R~N~LKn--sGi-P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iV  130 (1255)
T KOG0444|consen   55 QKLEHLSMA-HNQLISVHGELSDLPRLRSVIVRDNNLKN--SGI-PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIV  130 (1255)
T ss_pred             hhhhhhhhh-hhhhHhhhhhhccchhhHHHhhhcccccc--CCC-CchhcccccceeeecchhhhhhcchhhhhhcCcEE
Confidence            345566666 44444344444  7778888777776643  333 44455677788888888887777877777777777


Q ss_pred             EecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccC
Q 043839          178 LKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLS  247 (415)
Q Consensus       178 L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~  247 (415)
                      |+|++        +-+.+++.|-+||++ ++-...+|+.+.++.+||+|.++++.  ......+..+++|+.|.+++.+ 
T Consensus       131 LNLS~N~IetIPn~lfinLtDLLfLDLS-~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq-  208 (1255)
T KOG0444|consen  131 LNLSYNNIETIPNSLFINLTDLLFLDLS-NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ-  208 (1255)
T ss_pred             EEcccCccccCCchHHHhhHhHhhhccc-cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc-
Confidence            77777        334556667777777 55566677777777777777777665  2222333345556666666553 


Q ss_pred             cchhcHHHhhhccCCCcEEEeecCccccccccc--cc-CCCCC----------------------CCCceEEEEEccccC
Q 043839          248 YHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL-SEYKF----------------------PPTLTQLSLSNTKLM  302 (415)
Q Consensus       248 ~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp-~~~~l----------------------p~~L~~L~l~~~~l~  302 (415)
                      .....+|.++..+.+|..++++. |      .|  +| .+..+                      ..+|++|+++.|.++
T Consensus       209 RTl~N~Ptsld~l~NL~dvDlS~-N------~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt  281 (1255)
T KOG0444|consen  209 RTLDNIPTSLDDLHNLRDVDLSE-N------NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT  281 (1255)
T ss_pred             chhhcCCCchhhhhhhhhccccc-c------CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc
Confidence            33445555555666666666555 3      22  33 33444                      044445555555442


Q ss_pred             CCCchhhcCCCCCCeEeecc-----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhh
Q 043839          303 EDPMPTLEKLPLLEVLKLKQ-----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEEL  371 (415)
Q Consensus       303 ~~~~~~l~~l~~L~~L~l~~-----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l  371 (415)
                       .+|..+.+++.|+.|.+.+           .+.+.+|+.+..++| +++-+|..+..|++|+.|.++.|... ++|++|
T Consensus       282 -~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaI  358 (1255)
T KOG0444|consen  282 -VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAI  358 (1255)
T ss_pred             -cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccccee-echhhh
Confidence             4566666667776666655           445667888888887 88889999999999999999988776 699999


Q ss_pred             cCCCCCCeEEEecCCh
Q 043839          372 WCIKNLCKLELHWPQP  387 (415)
Q Consensus       372 ~~l~~L~~L~l~~c~~  387 (415)
                      .-++.|+.|++...|+
T Consensus       359 HlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  359 HLLPDLKVLDLRENPN  374 (1255)
T ss_pred             hhcCCcceeeccCCcC
Confidence            9999999999999885

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.77  E-value=8.4e-19  Score=166.93  Aligned_cols=259  Identities=19%  Similarity=0.178  Sum_probs=156.4

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCc
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLM  192 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~  192 (415)
                      .+..++|.+..+..    .++-..+|.++++|+.+.+..|.++.+|.......||+.|+|.+        +.++-++.|+
T Consensus        77 p~~t~~LdlsnNkl----~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr  152 (873)
T KOG4194|consen   77 PSQTQTLDLSNNKL----SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR  152 (873)
T ss_pred             ccceeeeecccccc----ccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence            78889999999998    56666889999999999999999999999888888999999988        4444555666


Q ss_pred             EEEecCC------------------------CCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEeccc
Q 043839          193 HLNFGSI------------------------TMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGDL  246 (415)
Q Consensus       193 ~L~l~~~------------------------~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~  246 (415)
                      .||++.|                        .++..--..+.++.+|.+|.++.+. ..+|. .+.++++|+.|++..|+
T Consensus       153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence            6666633                        2222222223444455555555555 33333 34556666666666653


Q ss_pred             CcchhcHHHhhhccCCCcEEEeecCccc-------------ccccc-----c--cc--CCCCC-----------------
Q 043839          247 SYHHSGVSKSLCELHKLECLKLVNEGKM-------------WQFSR-----M--IL--SEYKF-----------------  287 (415)
Q Consensus       247 ~~~~~~~~~~l~~l~~L~~L~l~~~~~i-------------l~~l~-----L--lp--~~~~l-----------------  287 (415)
                        ....--..+..+++|+.|.+.. |+|             ++.+.     +  +.  |+..+                 
T Consensus       233 --irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih  309 (873)
T KOG4194|consen  233 --IRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH  309 (873)
T ss_pred             --eeeehhhhhcCchhhhhhhhhh-cCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence              1111112333444444444433 222             11111     1  11  44444                 


Q ss_pred             ------CCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEE---cCC
Q 043839          288 ------PPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTM---GAG  348 (415)
Q Consensus       288 ------p~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~---~~~  348 (415)
                            .++|+.|+|+.|.++.-.+..+..+..|++|.++.          ..++++|++|+|++|...-.+.+   .+.
T Consensus       310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~  389 (873)
T KOG4194|consen  310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN  389 (873)
T ss_pred             cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence                  14444555555444444444444445555555544          34567888888888732222222   256


Q ss_pred             CccCccEEEEecCcccCCCh-hhhcCCCCCCeEEEecCCh
Q 043839          349 SMPKLESLILNPCAYLRKLP-EELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       349 ~l~~L~~L~l~~c~~~~~lp-~~l~~l~~L~~L~l~~c~~  387 (415)
                      ++++|++|.+.+|.. +.+| ..+..+++|++|++.+.+-
T Consensus       390 gl~~LrkL~l~gNql-k~I~krAfsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  390 GLPSLRKLRLTGNQL-KSIPKRAFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             cchhhhheeecCcee-eecchhhhccCcccceecCCCCcc
Confidence            789999999998865 4566 6788889999999887653

>PLN03210 Resistant to P

Probab=99.77  E-value=4.5e-18  Score=185.44  Aligned_cols=253  Identities=22%  Similarity=0.206  Sum_probs=158.9

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc------cc-cCcccccCcc-CCceEecCc------cccc
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV------LD-LYPPGLENLF-HLKYLKLIT------PLLK  186 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~~-~lp~~i~~l~-~L~~L~l~~------~~i~  186 (415)
                      ...++.+.+.......  ..+....|..|++|+.|.+..+.      +. .+|..+..++ +|+.|.+.+      +.-.
T Consensus       531 ~~~v~~i~l~~~~~~~--~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f  608 (1153)
T PLN03210        531 TKKVLGITLDIDEIDE--LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF  608 (1153)
T ss_pred             cceeeEEEeccCccce--eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC
Confidence            5566666655444322  34455668888888888875442      22 4566665554 477776665      2222


Q ss_pred             ccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCc
Q 043839          187 LMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLE  264 (415)
Q Consensus       187 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~  264 (415)
                      ...+|+.|++. ++....+|.++..+++|+.|++.++.  ..+| .++.+++|+.|++.+|  .....+|.++..+++|+
T Consensus       609 ~~~~L~~L~L~-~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c--~~L~~lp~si~~L~~L~  684 (1153)
T PLN03210        609 RPENLVKLQMQ-GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDC--SSLVELPSSIQYLNKLE  684 (1153)
T ss_pred             CccCCcEEECc-CccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCC--CCccccchhhhccCCCC
Confidence            34566666666 33344566666666666666666654  3333 3556666666666666  34555666666666666


Q ss_pred             EEEeecCccccccccccc-CCCCC--------------------CCCceEEEEEccccCCCCchhhcCCCCCCeEeecc-
Q 043839          265 CLKLVNEGKMWQFSRMIL-SEYKF--------------------PPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ-  322 (415)
Q Consensus       265 ~L~l~~~~~il~~l~Llp-~~~~l--------------------p~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-  322 (415)
                      .|++++++. ++.   +| .+ .+                    +.+|+.|+++++.+. .+|..+ .+++|+.|.+.+ 
T Consensus       685 ~L~L~~c~~-L~~---Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~  757 (1153)
T PLN03210        685 DLDMSRCEN-LEI---LPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEM  757 (1153)
T ss_pred             EEeCCCCCC-cCc---cCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccc-ccccccccccccc
Confidence            666665220 000   33 21 23                    144555555555542 233322 456666666643 


Q ss_pred             ----------------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          323 ----------------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       323 ----------------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                                      ...+++|+.|++++|+.+..+|..++++++|+.|++++|..++.+|..+ .+++|+.|++++|.
T Consensus       758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS  836 (1153)
T ss_pred             chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence                            1124689999999998889999999999999999999999998999776 68999999999986


Q ss_pred             h
Q 043839          387 P  387 (415)
Q Consensus       387 ~  387 (415)
                      .
T Consensus       837 ~  837 (1153)
T PLN03210        837 R  837 (1153)
T ss_pred             c
Confidence            4

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.74  E-value=2.1e-19  Score=170.98  Aligned_cols=258  Identities=18%  Similarity=0.119  Sum_probs=186.6

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCccccc-CccCCceEecCc--------ccccccccC
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLE-NLFHLKYLKLIT--------PLLKLMQKL  191 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~--------~~i~~l~~L  191 (415)
                      -.+++.|.+.++.+    ..+-...|..+.+|.+|.|+.|.++.+|.... +|++|+.|+|..        ..+..+.+|
T Consensus       172 ~~ni~~L~La~N~I----t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl  247 (873)
T KOG4194|consen  172 KVNIKKLNLASNRI----TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSL  247 (873)
T ss_pred             CCCceEEeeccccc----cccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhh
Confidence            45677777777777    44555667778888888888888887776544 488888888776        445667777


Q ss_pred             cEEEecCCCCCCCCCCc-ccCccccceeccccCC-CCC-ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEe
Q 043839          192 MHLNFGSITMPSPPNNY-SSSLKDLIFISAVHPS-SCT-PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKL  268 (415)
Q Consensus       192 ~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  268 (415)
                      +.|.+..|. ...+-++ +..+.++++|++..+. ..+ -.++-.+++|+.|+++.|  .....-+.+...+++|+.|++
T Consensus       248 ~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N--aI~rih~d~WsftqkL~~LdL  324 (873)
T KOG4194|consen  248 QNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN--AIQRIHIDSWSFTQKLKELDL  324 (873)
T ss_pred             hhhhhhhcC-cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh--hhheeecchhhhcccceeEec
Confidence            777777343 3344443 5667778888887777 333 344567788888888887  455555666777788888888


Q ss_pred             ecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc-------------CCCCCcccE
Q 043839          269 VNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ-------------NSSFPLLKI  331 (415)
Q Consensus       269 ~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-------------~~~~~~L~~  331 (415)
                      +. |      ++  ++  .+..+ ..|+.|.|+.|.+....-..+..+.+|+.|++..             ..++++|+.
T Consensus       325 s~-N------~i~~l~~~sf~~L-~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk  396 (873)
T KOG4194|consen  325 SS-N------RITRLDEGSFRVL-SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK  396 (873)
T ss_pred             cc-c------ccccCChhHHHHH-HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence            87 5      33  44  56667 7788888888876544444566677888888776             456889999


Q ss_pred             EEeccCCCccceE-EcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEe------cCChhhHhhccc
Q 043839          332 LHLKSMLWLEEWT-MGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELH------WPQPHYRCNRKS  395 (415)
Q Consensus       332 L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~------~c~~~~~~~~~~  395 (415)
                      |.+.+| +++.+| ..+.++++|+.|++.+|+.-.--|..+..+ .|++|.+.      +|.-.|...|..
T Consensus       397 L~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~  465 (873)
T KOG4194|consen  397 LRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLY  465 (873)
T ss_pred             eeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHH
Confidence            999998 899998 458899999999999999876556778777 88877654      788888877654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.72  E-value=2.6e-19  Score=171.61  Aligned_cols=258  Identities=21%  Similarity=0.170  Sum_probs=166.4

Q ss_pred             CCCCCccCCCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc-----
Q 043839          110 DLTEFFPLEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT-----  182 (415)
Q Consensus       110 ~~~~~~~~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-----  182 (415)
                      .+.....|...  .+++-.|.++.+.+    ..++...|-+++.|-+|||++|.+..+|+.+..+.+|+.|.|++     
T Consensus       112 hNqL~EvP~~LE~AKn~iVLNLS~N~I----etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h  187 (1255)
T KOG0444|consen  112 HNQLREVPTNLEYAKNSIVLNLSYNNI----ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH  187 (1255)
T ss_pred             hhhhhhcchhhhhhcCcEEEEcccCcc----ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH
Confidence            33333344444  55555555555555    44555555666666666666666666666666666666666665     


Q ss_pred             ---ccccccccCcEEEecCCCC-CCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhh
Q 043839          183 ---PLLKLMQKLMHLNFGSITM-PSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSL  257 (415)
Q Consensus       183 ---~~i~~l~~L~~L~l~~~~~-~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  257 (415)
                         ..+-++++|+.|.+++.+- ...+|.++..+.||..++++.+. ..+|+.+-++++|+.|.+++|   ....+....
T Consensus       188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N---~iteL~~~~  264 (1255)
T KOG0444|consen  188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN---KITELNMTE  264 (1255)
T ss_pred             HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC---ceeeeeccH
Confidence               3334445555555552221 33455556666666666666555 555555556666666666665   333344444


Q ss_pred             hccCCCcEEEeecCccccccccc--cc-CCCCCCCCceEEEEEccccCC-CCchhhcCCCCCCeEeecc---------CC
Q 043839          258 CELHKLECLKLVNEGKMWQFSRM--IL-SEYKFPPTLTQLSLSNTKLME-DPMPTLEKLPLLEVLKLKQ---------NS  324 (415)
Q Consensus       258 ~~l~~L~~L~l~~~~~il~~l~L--lp-~~~~lp~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~---------~~  324 (415)
                      +.+.+|++|+++. |      .|  +| .+..+ +.|++|.+.+|+++- .+|+.+|++.+|+++..++         ..
T Consensus       265 ~~W~~lEtLNlSr-N------QLt~LP~avcKL-~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglc  336 (1255)
T KOG0444|consen  265 GEWENLETLNLSR-N------QLTVLPDAVCKL-TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLC  336 (1255)
T ss_pred             HHHhhhhhhcccc-c------hhccchHHHhhh-HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhh
Confidence            5555566666555 4      44  88 88899 999999999998754 6788999999999998887         45


Q ss_pred             CCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEe
Q 043839          325 SFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELH  383 (415)
Q Consensus       325 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~  383 (415)
                      .+++|+.|.++.| .+-.+|..+.-++-|+.|++..|+.+-.-|.--..-++|+.-+|.
T Consensus       337 RC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  337 RCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             hhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence            6789999999988 677899999999999999999999886544211122455544443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.70  E-value=6.9e-20  Score=167.20  Aligned_cols=262  Identities=22%  Similarity=0.211  Sum_probs=162.1

Q ss_pred             cCCCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccc--
Q 043839          116 PLEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLL--  185 (415)
Q Consensus       116 ~~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i--  185 (415)
                      .++.+  +.++..+.+.++..    ...++..+. ++.|+.||...|-++.+|+.++.+..|.-|+++.      +++  
T Consensus       152 lp~~~~~~~~l~~l~~~~n~l----~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~g  226 (565)
T KOG0472|consen  152 LPEDMVNLSKLSKLDLEGNKL----KALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPG  226 (565)
T ss_pred             CchHHHHHHHHHHhhccccch----hhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCc
Confidence            44444  55555555555554    333444444 7778888887777778888888777777777766      333  


Q ss_pred             ----------------------cccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEE
Q 043839          186 ----------------------KLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRI  242 (415)
Q Consensus       186 ----------------------~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l  242 (415)
                                            .++.++..||+. .+...++|+++.-+.+|.+|+++++. ..+|..++++ .|+.|.+
T Consensus       227 cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR-dNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~l  304 (565)
T KOG0472|consen  227 CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR-DNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLAL  304 (565)
T ss_pred             cHHHHHHHhcccHHHhhHHHHhcccccceeeecc-ccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhh
Confidence                                  345555566665 33445566666666666666666666 5666666666 5666666


Q ss_pred             ecccC---------cchhcHH------------------------------HhhhccCCCcEEEeec------Cccccc-
Q 043839          243 SGDLS---------YHHSGVS------------------------------KSLCELHKLECLKLVN------EGKMWQ-  276 (415)
Q Consensus       243 ~~~~~---------~~~~~~~------------------------------~~l~~l~~L~~L~l~~------~~~il~-  276 (415)
                      .+|.-         ....++.                              .....+.+.+.|+++.      ..+|.+ 
T Consensus       305 eGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea  384 (565)
T KOG0472|consen  305 EGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEA  384 (565)
T ss_pred             cCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHH
Confidence            65530         0000000                              0011111223333322      000100 


Q ss_pred             -----------------cc-------------------cc--cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCe
Q 043839          277 -----------------FS-------------------RM--IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEV  317 (415)
Q Consensus       277 -----------------~l-------------------~L--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~  317 (415)
                                       .+                   .+  +| .+..+ ++|..|++++|.+ .++|..++.+-.|+.
T Consensus       385 ~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l-~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~  462 (565)
T KOG0472|consen  385 AKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQL-QKLTFLDLSNNLL-NDLPEEMGSLVRLQT  462 (565)
T ss_pred             hhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhh-hcceeeecccchh-hhcchhhhhhhhhhe
Confidence                             00                   11  44 66788 8999999999886 577888888888999


Q ss_pred             Eeecc--CCCCC-------cccEEEeccCCCccceEEc-CCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839          318 LKLKQ--NSSFP-------LLKILHLKSMLWLEEWTMG-AGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       318 L~l~~--~~~~~-------~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~  387 (415)
                      |+++.  +...|       .|+.+- +.+..+++++.. +++|.+|.+|++.+|... .+|+.++++++|++|+++|.|-
T Consensus       463 LnlS~NrFr~lP~~~y~lq~lEtll-as~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  463 LNLSFNRFRMLPECLYELQTLETLL-ASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             ecccccccccchHHHhhHHHHHHHH-hccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCcc
Confidence            99986  11112       233343 444478888766 899999999999998765 7999999999999999999986


Q ss_pred             h
Q 043839          388 H  388 (415)
Q Consensus       388 ~  388 (415)
                      .
T Consensus       541 r  541 (565)
T KOG0472|consen  541 R  541 (565)
T ss_pred             C
Confidence            4

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.66  E-value=4.4e-19  Score=162.00  Aligned_cols=230  Identities=20%  Similarity=0.175  Sum_probs=143.2

Q ss_pred             HhccCCcccEEEcCCcccccCcccccCccCCceEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCccccce
Q 043839          145 FCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIF  217 (415)
Q Consensus       145 ~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~  217 (415)
                      .+.++..|.+|++.++.+.++|.+|+.+..++.++.++       +.++++.+|+.|+.+ .+-...+|++++.+..|..
T Consensus        63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s-~n~~~el~~~i~~~~~l~d  141 (565)
T KOG0472|consen   63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS-SNELKELPDSIGRLLDLED  141 (565)
T ss_pred             hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc-ccceeecCchHHHHhhhhh
Confidence            34455555555555555555555555555555555555       445555555555555 2223445555555555555


Q ss_pred             eccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc-CCCCCCCCceE
Q 043839          218 ISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL-SEYKFPPTLTQ  293 (415)
Q Consensus       218 L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp-~~~~lp~~L~~  293 (415)
                      ++..++. ...|.+++++.+|..+++.++   ...++|+....++.|++++... |      -|  +| .++.+ .+|..
T Consensus       142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n---~l~~l~~~~i~m~~L~~ld~~~-N------~L~tlP~~lg~l-~~L~~  210 (565)
T KOG0472|consen  142 LDATNNQISSLPEDMVNLSKLSKLDLEGN---KLKALPENHIAMKRLKHLDCNS-N------LLETLPPELGGL-ESLEL  210 (565)
T ss_pred             hhccccccccCchHHHHHHHHHHhhcccc---chhhCCHHHHHHHHHHhcccch-h------hhhcCChhhcch-hhhHH
Confidence            5555555 555555555555555555554   3333343333355555555544 1      11  55 55555 55555


Q ss_pred             EEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcc
Q 043839          294 LSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAY  363 (415)
Q Consensus       294 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~  363 (415)
                      |++..|++. ..| .|..|..|+.++++.          ...++++..|++.+| ++++.|+++.-+.+|++|++++|..
T Consensus       211 LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~i  287 (565)
T KOG0472|consen  211 LYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDI  287 (565)
T ss_pred             HHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCcc
Confidence            555555542 222 455555555555554          235677788888998 8999999999999999999999977


Q ss_pred             cCCChhhhcCCCCCCeEEEecCChhhHh
Q 043839          364 LRKLPEELWCIKNLCKLELHWPQPHYRC  391 (415)
Q Consensus       364 ~~~lp~~l~~l~~L~~L~l~~c~~~~~~  391 (415)
                      + .+|..++++ .|+.|.+.|.|-...+
T Consensus       288 s-~Lp~sLgnl-hL~~L~leGNPlrTiR  313 (565)
T KOG0472|consen  288 S-SLPYSLGNL-HLKFLALEGNPLRTIR  313 (565)
T ss_pred             c-cCCcccccc-eeeehhhcCCchHHHH
Confidence            6 689999999 9999999999976554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.64  E-value=1.1e-17  Score=167.09  Aligned_cols=271  Identities=21%  Similarity=0.206  Sum_probs=158.2

Q ss_pred             eeEEEEEeCCCCCccCCCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEe
Q 043839          102 VKRCFILKDLTEFFPLEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLK  179 (415)
Q Consensus       102 ~r~l~l~~~~~~~~~~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  179 (415)
                      .+++.+. ++....++..+  .++|+.|.+..+.+..     .+....++++|++|.|.++.+..+|.++..+++|++|+
T Consensus        47 L~~l~ls-nn~~~~fp~~it~l~~L~~ln~s~n~i~~-----vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ld  120 (1081)
T KOG0618|consen   47 LKSLDLS-NNQISSFPIQITLLSHLRQLNLSRNYIRS-----VPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLD  120 (1081)
T ss_pred             eEEeecc-ccccccCCchhhhHHHHhhcccchhhHhh-----CchhhhhhhcchhheeccchhhcCchhHHhhhcccccc
Confidence            5556666 55555555555  7777777777776532     34566777777777777777777777777777777777


Q ss_pred             cCc--------------------------------------------------ccccccccCcEEEecCCCCC-------
Q 043839          180 LIT--------------------------------------------------PLLKLMQKLMHLNFGSITMP-------  202 (415)
Q Consensus       180 l~~--------------------------------------------------~~i~~l~~L~~L~l~~~~~~-------  202 (415)
                      +++                                                  .++..++.  .|++.+|.+.       
T Consensus       121 lS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~  198 (1081)
T KOG0618|consen  121 LSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNL  198 (1081)
T ss_pred             cchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhc
Confidence            777                                                  11111111  2333333111       


Q ss_pred             ----------------------------------CCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccC
Q 043839          203 ----------------------------------SPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLS  247 (415)
Q Consensus       203 ----------------------------------~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~  247 (415)
                                                        ...+  ...-.+|++++++++. ..+|.+++.+.+|+.+.+..|.-
T Consensus       199 ~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l  276 (1081)
T KOG0618|consen  199 ANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL  276 (1081)
T ss_pred             cchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcchHHHHhcccceEecccchhH
Confidence                                              0000  1122467777777777 77777777777777777777620


Q ss_pred             --------------------cchhcHHHhhhccCCCcEEEeecCccc--------------cccc---------------
Q 043839          248 --------------------YHHSGVSKSLCELHKLECLKLVNEGKM--------------WQFS---------------  278 (415)
Q Consensus       248 --------------------~~~~~~~~~l~~l~~L~~L~l~~~~~i--------------l~~l---------------  278 (415)
                                          ...+.+|.....+++|++|++.. |.+              ++.+               
T Consensus       277 ~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e  355 (1081)
T KOG0618|consen  277 VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE  355 (1081)
T ss_pred             HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccc
Confidence                                01222334444556677777766 332              0100               


Q ss_pred             --------------cc----ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc---------CCCCCcccE
Q 043839          279 --------------RM----ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKI  331 (415)
Q Consensus       279 --------------~L----lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~~  331 (415)
                                    .|    +|.+..+ .+|+.|+|++|.+..-+...+.+++.|+.|+++|         ...+++|++
T Consensus       356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~-~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~t  434 (1081)
T KOG0618|consen  356 NNHAALQELYLANNHLTDSCFPVLVNF-KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHT  434 (1081)
T ss_pred             hhhHHHHHHHHhcCcccccchhhhccc-cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHH
Confidence                          11    3434445 6666666666665433444556666666666666         344556666


Q ss_pred             EEeccCCCccceEEcCCCccCccEEEEecCcccC-CChhhhcCCCCCCeEEEecCCh
Q 043839          332 LHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLR-KLPEELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       332 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~-~lp~~l~~l~~L~~L~l~~c~~  387 (415)
                      |...+| .+..+| ++..++.|+.+|++.|.... .+|..... ++|++||++|.+.
T Consensus       435 L~ahsN-~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  435 LRAHSN-QLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             HhhcCC-ceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence            666555 555666 66777888888888777554 34443332 7888888888773

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.49  E-value=4.5e-13  Score=137.46  Aligned_cols=242  Identities=15%  Similarity=0.034  Sum_probs=156.9

Q ss_pred             eeEEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecC
Q 043839          102 VKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLI  181 (415)
Q Consensus       102 ~r~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~  181 (415)
                      -..+.+. ......+|..+.++++.|.+.++...    .++    ...++|++|++++|.++.+|..   .++|+.|+++
T Consensus       203 ~~~LdLs-~~~LtsLP~~l~~~L~~L~L~~N~Lt----~LP----~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        203 NAVLNVG-ESGLTTLPDCLPAHITTLVIPDNNLT----SLP----ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIF  270 (788)
T ss_pred             CcEEEcC-CCCCCcCCcchhcCCCEEEccCCcCC----CCC----CCCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence            4456666 55555566655668999999888763    222    2357899999999999888853   3578888888


Q ss_pred             cccccc----cccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHh
Q 043839          182 TPLLKL----MQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKS  256 (415)
Q Consensus       182 ~~~i~~----l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  256 (415)
                      +..+..    ..+|+.|++++|. ...+|..   .++|+.|++++|. ..+|..   ..+|+.|++++|   ....+|. 
T Consensus       271 ~N~L~~Lp~lp~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N---~L~~LP~-  339 (788)
T PRK15387        271 SNPLTHLPALPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN---QLTSLPT-  339 (788)
T ss_pred             CCchhhhhhchhhcCEEECcCCc-ccccccc---ccccceeECCCCccccCCCC---cccccccccccC---ccccccc-
Confidence            733333    2568888888554 4456653   4678888888887 555542   235677777776   2333442 


Q ss_pred             hhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc------CCCCCc
Q 043839          257 LCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ------NSSFPL  328 (415)
Q Consensus       257 l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~------~~~~~~  328 (415)
                        ...+|+.|++++ |      +|  +|   .+|++|+.|++++|.+. .+|..   ..+|+.|++++      ....++
T Consensus       340 --lp~~Lq~LdLS~-N------~Ls~LP---~lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l~s~  403 (788)
T PRK15387        340 --LPSGLQELSVSD-N------QLASLP---TLPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVLPSE  403 (788)
T ss_pred             --cccccceEecCC-C------ccCCCC---CCCcccceehhhccccc-cCccc---ccccceEEecCCcccCCCCcccC
Confidence              124688888877 5      22  34   22367777777777764 33332   24677777766      222346


Q ss_pred             ccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839          329 LKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       329 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~  387 (415)
                      |+.|++++| .+..+|..   ..+|+.|++++|... .+|..+.++++|+.|++++++-
T Consensus       404 L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        404 LKELMVSGN-RLTSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             CCEEEccCC-cCCCCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence            777888777 46666642   346677777777654 6777777777888888877663

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.45  E-value=3.1e-14  Score=134.70  Aligned_cols=174  Identities=23%  Similarity=0.191  Sum_probs=92.0

Q ss_pred             HHHhccCCcccEEEcCCcccc-----cCcccccCccCCceEecCc--------------ccccccccCcEEEecCCCCCC
Q 043839          143 ENFCKKFKHLRVLNLGSAVLD-----LYPPGLENLFHLKYLKLIT--------------PLLKLMQKLMHLNFGSITMPS  203 (415)
Q Consensus       143 ~~~~~~~~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~--------------~~i~~l~~L~~L~l~~~~~~~  203 (415)
                      ...+..+.+|++|+++++.++     .++..+...++|+++++++              ..+.++++|+.|++++|.+..
T Consensus        16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~   95 (319)
T cd00116          16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP   95 (319)
T ss_pred             HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence            345566666777777777663     3444444555566666655              124455677777777555544


Q ss_pred             CCCCcccCccc---cceeccccCC-C-----CCccccCCC-CCCCeEEEecccCcch----hcHHHhhhccCCCcEEEee
Q 043839          204 PPNNYSSSLKD---LIFISAVHPS-S-----CTPDILGRL-PNVQTLRISGDLSYHH----SGVSKSLCELHKLECLKLV  269 (415)
Q Consensus       204 ~~p~~i~~l~~---L~~L~l~~~~-~-----~~~~~l~~l-~~L~~L~l~~~~~~~~----~~~~~~l~~l~~L~~L~l~  269 (415)
                      ..+..+..+.+   |++|++.++. .     .+...+..+ ++|+.|++++|.  ..    ..++..+..+++|+.|+++
T Consensus        96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~~L~~L~l~  173 (319)
T cd00116          96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR--LEGASCEALAKALRANRDLKELNLA  173 (319)
T ss_pred             hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc--CCchHHHHHHHHHHhCCCcCEEECc
Confidence            44444444444   7777777665 1     223334555 677777777763  22    2334455556667777776


Q ss_pred             cCccccccccc--cc-CCCCCCCCceEEEEEccccCCCC----chhhcCCCCCCeEeec
Q 043839          270 NEGKMWQFSRM--IL-SEYKFPPTLTQLSLSNTKLMEDP----MPTLEKLPLLEVLKLK  321 (415)
Q Consensus       270 ~~~~il~~l~L--lp-~~~~lp~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~  321 (415)
                      + +.+-.. .+  ++ .+..+ ++|++|++++|.+.+..    ...+..+++|++|+++
T Consensus       174 ~-n~l~~~-~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls  229 (319)
T cd00116         174 N-NGIGDA-GIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG  229 (319)
T ss_pred             C-CCCchH-HHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecC
Confidence            6 311000 00  12 23344 57777777777654322    2233344445555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.43  E-value=6.8e-13  Score=136.78  Aligned_cols=231  Identities=16%  Similarity=0.154  Sum_probs=108.1

Q ss_pred             eeEEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecC
Q 043839          102 VKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLI  181 (415)
Q Consensus       102 ~r~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~  181 (415)
                      ...+.+. +.....+|..+.++++.|.+.++..    ..++...+   ++|++|++++|.++.+|..+.  .+|+.|+++
T Consensus       180 ~~~L~L~-~~~LtsLP~~Ip~~L~~L~Ls~N~L----tsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        180 KTELRLK-ILGLTTIPACIPEQITTLILDNNEL----KSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS  249 (754)
T ss_pred             ceEEEeC-CCCcCcCCcccccCCcEEEecCCCC----CcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence            3445555 4444444443445666666666655    22222221   356666666666666665442  245555555


Q ss_pred             ccccccc-----ccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHH
Q 043839          182 TPLLKLM-----QKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSK  255 (415)
Q Consensus       182 ~~~i~~l-----~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  255 (415)
                      +..+..+     .+|+.|++++| ....+|..+.  .+|++|++++|. ..+|..+.  ++|+.|++++|   ....+|.
T Consensus       250 ~N~L~~LP~~l~s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N---~Lt~LP~  321 (754)
T PRK15370        250 INRITELPERLPSALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN---SLTALPE  321 (754)
T ss_pred             CCccCcCChhHhCCCCEEECcCC-ccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC---ccccCCc
Confidence            4222221     23455555422 2223444332  244555544444 33333221  23444444444   1112222


Q ss_pred             hhhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc-------CCCCCc
Q 043839          256 SLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ-------NSSFPL  328 (415)
Q Consensus       256 ~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-------~~~~~~  328 (415)
                      .+                              |++|+.|++++|.++. +|..+  .++|+.|++++       ....++
T Consensus       322 ~l------------------------------~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~LP~~lp~~  368 (754)
T PRK15370        322 TL------------------------------PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVLPETLPPT  368 (754)
T ss_pred             cc------------------------------cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCcCChhhcCC
Confidence            11                              1444445554444432 22222  13444444443       011245


Q ss_pred             ccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhc----CCCCCCeEEEecCCh
Q 043839          329 LKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELW----CIKNLCKLELHWPQP  387 (415)
Q Consensus       329 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~----~l~~L~~L~l~~c~~  387 (415)
                      |++|++++| .+..+|..+.  ++|+.|++++|... .+|..+.    .++.+..|++.+.|-
T Consensus       369 L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        369 ITTLDVSRN-ALTNLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             cCEEECCCC-cCCCCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence            666777776 5556665432  35777777777654 4554332    346667777777663

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.40  E-value=3.2e-15  Score=121.97  Aligned_cols=150  Identities=14%  Similarity=0.170  Sum_probs=72.5

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCC
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSIT  200 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~  200 (415)
                      ++++..|.++++...     ..+.-+..+.+|++|++.+|+++.+|.+|+.++.||.|++..                 +
T Consensus        32 ~s~ITrLtLSHNKl~-----~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-----------------n   89 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-----VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-----------------N   89 (264)
T ss_pred             hhhhhhhhcccCcee-----ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-----------------h
Confidence            444555555544431     123334455555555555555555555555444444444432                 2


Q ss_pred             CCCCCCCcccCccccceeccccCC---CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccc
Q 043839          201 MPSPPNNYSSSLKDLIFISAVHPS---SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQF  277 (415)
Q Consensus       201 ~~~~~p~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~  277 (415)
                      -...+|.++|.++.|+.|++.++.   ..+|..+-.++.|+.|+++++   ..+.+|..++++++|+.|.+.. |+.+. 
T Consensus        90 rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn---dfe~lp~dvg~lt~lqil~lrd-ndll~-  164 (264)
T KOG0617|consen   90 RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN---DFEILPPDVGKLTNLQILSLRD-NDLLS-  164 (264)
T ss_pred             hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC---CcccCChhhhhhcceeEEeecc-Cchhh-
Confidence            233445555555555555555544   344444444555555555554   3344455555555555554444 32222 


Q ss_pred             ccccc-CCCCCCCCceEEEEEcccc
Q 043839          278 SRMIL-SEYKFPPTLTQLSLSNTKL  301 (415)
Q Consensus       278 l~Llp-~~~~lp~~L~~L~l~~~~l  301 (415)
                         +| .++.+ ..|+.|.+.+|++
T Consensus       165 ---lpkeig~l-t~lrelhiqgnrl  185 (264)
T KOG0617|consen  165 ---LPKEIGDL-TRLRELHIQGNRL  185 (264)
T ss_pred             ---CcHHHHHH-HHHHHHhccccee
Confidence               45 55555 5555555555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.39  E-value=2.5e-14  Score=143.44  Aligned_cols=267  Identities=20%  Similarity=0.181  Sum_probs=180.9

Q ss_pred             CCceeEEEEEeCCCCCccCCCC-CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCce
Q 043839           99 LANVKRCFILKDLTEFFPLEHS-DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKY  177 (415)
Q Consensus        99 ~~~~r~l~l~~~~~~~~~~~~~-~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~  177 (415)
                      ....+++... .+......... ..++.++.+..+..    ..+ +.++..+.+|..+...+|.++.+|..+.....|++
T Consensus       218 g~~l~~L~a~-~n~l~~~~~~p~p~nl~~~dis~n~l----~~l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~  291 (1081)
T KOG0618|consen  218 GPSLTALYAD-HNPLTTLDVHPVPLNLQYLDISHNNL----SNL-PEWIGACANLEALNANHNRLVALPLRISRITSLVS  291 (1081)
T ss_pred             Ccchheeeec-cCcceeeccccccccceeeecchhhh----hcc-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHH
Confidence            3445555555 44333333344 66777777777765    333 47888888888888888888888888888888888


Q ss_pred             EecCc-------ccccccccCcEEEecCCCCCCCCCCc-ccCccc-cceeccccCC-CCCccc-cCCCCCCCeEEEeccc
Q 043839          178 LKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNY-SSSLKD-LIFISAVHPS-SCTPDI-LGRLPNVQTLRISGDL  246 (415)
Q Consensus       178 L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~-L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~  246 (415)
                      |....       +..+.++.|++|++..| ....+|+. +..+.. |..|+.+.+. ...|.. =..++.|+.|++.+| 
T Consensus       292 l~~~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-  369 (1081)
T KOG0618|consen  292 LSAAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-  369 (1081)
T ss_pred             HHhhhhhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-
Confidence            77766       55566888888888844 44455553 222222 5555555554 333321 123566888888888 


Q ss_pred             CcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc
Q 043839          247 SYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ  322 (415)
Q Consensus       247 ~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  322 (415)
                       ...+...+.+...++|+.|++++ |      +|  +|  .+.++ +.|+.|+|++|+++ .+|..+.+++.|++|...+
T Consensus       370 -~Ltd~c~p~l~~~~hLKVLhLsy-N------rL~~fpas~~~kl-e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahs  439 (1081)
T KOG0618|consen  370 -HLTDSCFPVLVNFKHLKVLHLSY-N------RLNSFPASKLRKL-EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHS  439 (1081)
T ss_pred             -cccccchhhhccccceeeeeecc-c------ccccCCHHHHhch-HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcC
Confidence             56677777788889999999998 6      55  78  77888 89999999999974 6778888999999988876


Q ss_pred             --------CCCCCcccEEEeccCCCccceEEcCC-CccCccEEEEecCcccCCChhhhcCCCCCCeEEEec
Q 043839          323 --------NSSFPLLKILHLKSMLWLEEWTMGAG-SMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHW  384 (415)
Q Consensus       323 --------~~~~~~L~~L~l~~~~~l~~l~~~~~-~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~  384 (415)
                              ...+++|+.++++.| ++..+..... .-|+|++|+++||..+.---..+..+..+...++.-
T Consensus       440 N~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~  509 (1081)
T KOG0618|consen  440 NQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITL  509 (1081)
T ss_pred             CceeechhhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheeccc
Confidence                    455678999999987 6664432222 228999999999985432123344455555555543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.36  E-value=3.3e-12  Score=131.17  Aligned_cols=232  Identities=16%  Similarity=0.055  Sum_probs=165.1

Q ss_pred             CceeEEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEe
Q 043839          100 ANVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLK  179 (415)
Q Consensus       100 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  179 (415)
                      ..++.+.+. ++....++. ..++|++|.+.++...    .+ +.   ..++|+.|++++|.++.+|...   ..|+.|+
T Consensus       222 ~~L~~L~L~-~N~Lt~LP~-lp~~Lk~LdLs~N~Lt----sL-P~---lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~  288 (788)
T PRK15387        222 AHITTLVIP-DNNLTSLPA-LPPELRTLEVSGNQLT----SL-PV---LPPGLLELSIFSNPLTHLPALP---SGLCKLW  288 (788)
T ss_pred             cCCCEEEcc-CCcCCCCCC-CCCCCcEEEecCCccC----cc-cC---cccccceeeccCCchhhhhhch---hhcCEEE
Confidence            356888888 666654442 2789999999998773    22 21   2468999999999988777633   5688888


Q ss_pred             cCccccccc----ccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHH
Q 043839          180 LITPLLKLM----QKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVS  254 (415)
Q Consensus       180 l~~~~i~~l----~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  254 (415)
                      +++..+..+    ++|+.|++++|.+ ..+|...   .+|+.|.+.+|. ..+|..   ..+|+.|++++|   ....+|
T Consensus       289 Ls~N~Lt~LP~~p~~L~~LdLS~N~L-~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N---~Ls~LP  358 (788)
T PRK15387        289 IFGNQLTSLPVLPPGLQELSVSDNQL-ASLPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSDN---QLASLP  358 (788)
T ss_pred             CcCCccccccccccccceeECCCCcc-ccCCCCc---ccccccccccCcccccccc---ccccceEecCCC---ccCCCC
Confidence            888444433    6899999996544 4566533   357778888887 666642   257999999998   333444


Q ss_pred             HhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc--CC----CC
Q 043839          255 KSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ--NS----SF  326 (415)
Q Consensus       255 ~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~--~~----~~  326 (415)
                      ..   ..+|+.|+++. |      ++  +|   ..|.+|+.|++++|.++. +|..   .++|+.|++++  ..    .+
T Consensus       359 ~l---p~~L~~L~Ls~-N------~L~~LP---~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP~l~  421 (788)
T PRK15387        359 TL---PSELYKLWAYN-N------RLTSLP---ALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSLPMLP  421 (788)
T ss_pred             CC---Ccccceehhhc-c------ccccCc---ccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCCCcch
Confidence            32   24677777766 4      22  44   223689999999998864 4432   36788999987  22    23


Q ss_pred             CcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhc
Q 043839          327 PLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELW  372 (415)
Q Consensus       327 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~  372 (415)
                      .+|+.|++++| .++.+|..++.+++|+.|++++|+..+..|..+.
T Consensus       422 ~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~  466 (788)
T PRK15387        422 SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQALR  466 (788)
T ss_pred             hhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence            46899999998 7889999999999999999999999887776653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.36  E-value=7.7e-15  Score=119.74  Aligned_cols=164  Identities=22%  Similarity=0.277  Sum_probs=103.9

Q ss_pred             hccCCcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-
Q 043839          146 CKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-  224 (415)
Q Consensus       146 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-  224 (415)
                      +.++.+.+.|.+++|+++.+|..|..+.+|+.|++.                 |+...++|.++++++.|+.|++.-+. 
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~-----------------nnqie~lp~~issl~klr~lnvgmnrl   91 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLS-----------------NNQIEELPTSISSLPKLRILNVGMNRL   91 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcc-----------------cchhhhcChhhhhchhhhheecchhhh
Confidence            445666666777777776766655555555444443                 55556667777777777777766665 


Q ss_pred             CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCCCceEEEEEccccCC
Q 043839          225 SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLME  303 (415)
Q Consensus       225 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~  303 (415)
                      ...|.+++.++.|+.|+++.+. .....                            +| .|..+ ..|+.|++++|.+ .
T Consensus        92 ~~lprgfgs~p~levldltynn-l~e~~----------------------------lpgnff~m-~tlralyl~dndf-e  140 (264)
T KOG0617|consen   92 NILPRGFGSFPALEVLDLTYNN-LNENS----------------------------LPGNFFYM-TTLRALYLGDNDF-E  140 (264)
T ss_pred             hcCccccCCCchhhhhhccccc-ccccc----------------------------CCcchhHH-HHHHHHHhcCCCc-c
Confidence            6666677777777777766652 11112                            45 44445 6667777777765 4


Q ss_pred             CCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcC
Q 043839          304 DPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWC  373 (415)
Q Consensus       304 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~  373 (415)
                      .+|+.++++++|+.|.+              ..| .+-++|.++|.++.|+.|.|.+|... -+|+.+++
T Consensus       141 ~lp~dvg~lt~lqil~l--------------rdn-dll~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  141 ILPPDVGKLTNLQILSL--------------RDN-DLLSLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             cCChhhhhhcceeEEee--------------ccC-chhhCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence            56666666665554444              565 56678888888888888888888665 46655544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.33  E-value=2.3e-13  Score=128.70  Aligned_cols=228  Identities=21%  Similarity=0.134  Sum_probs=157.6

Q ss_pred             EEEcCCcccc--cCcccccCccCCceEecCc------------ccccccccCcEEEecCCCCCC------CCCCcccCcc
Q 043839          154 VLNLGSAVLD--LYPPGLENLFHLKYLKLIT------------PLLKLMQKLMHLNFGSITMPS------PPNNYSSSLK  213 (415)
Q Consensus       154 ~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~------------~~i~~l~~L~~L~l~~~~~~~------~~p~~i~~l~  213 (415)
                      .|+|+++.++  ..+..+..+.+|++|++++            ..+...+++++++++++....      .++..++.++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4677777765  5555566777899999998            334566779999998665441      2334567788


Q ss_pred             ccceeccccCC--CCCccccCCCC---CCCeEEEecccCcch----hcHHHhhhcc-CCCcEEEeecCccccccccc--c
Q 043839          214 DLIFISAVHPS--SCTPDILGRLP---NVQTLRISGDLSYHH----SGVSKSLCEL-HKLECLKLVNEGKMWQFSRM--I  281 (415)
Q Consensus       214 ~L~~L~l~~~~--~~~~~~l~~l~---~L~~L~l~~~~~~~~----~~~~~~l~~l-~~L~~L~l~~~~~il~~l~L--l  281 (415)
                      +|+.|++.++.  ...+..+..+.   +|+.|++++|.  ..    ..+...+..+ ++|+.|++++ +.+-.. ..  +
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~--~~~~~~~~l~~~l~~~~~~L~~L~L~~-n~l~~~-~~~~~  157 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG--LGDRGLRLLAKGLKDLPPALEKLVLGR-NRLEGA-SCEAL  157 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc--cchHHHHHHHHHHHhCCCCceEEEcCC-CcCCch-HHHHH
Confidence            99999999888  33444444444   49999999983  33    2344566677 8999999998 311000 00  3


Q ss_pred             c-CCCCCCCCceEEEEEccccCCCC----chhhcCCCCCCeEeecc--------------CCCCCcccEEEeccCCCccc
Q 043839          282 L-SEYKFPPTLTQLSLSNTKLMEDP----MPTLEKLPLLEVLKLKQ--------------NSSFPLLKILHLKSMLWLEE  342 (415)
Q Consensus       282 p-~~~~lp~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~--------------~~~~~~L~~L~l~~~~~l~~  342 (415)
                      + .+..+ ++|++|++++|.+++..    +..+..+++|+.|++++              ...+++|++|++++|. ++.
T Consensus       158 ~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~  235 (319)
T cd00116         158 AKALRAN-RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTD  235 (319)
T ss_pred             HHHHHhC-CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-Cch
Confidence            3 45566 78999999999887532    33455667999999987              3456789999999984 442


Q ss_pred             e-EEc-CC----CccCccEEEEecCcccC----CChhhhcCCCCCCeEEEecCCh
Q 043839          343 W-TMG-AG----SMPKLESLILNPCAYLR----KLPEELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       343 l-~~~-~~----~l~~L~~L~l~~c~~~~----~lp~~l~~l~~L~~L~l~~c~~  387 (415)
                      . ... ..    ..+.|+.|++++|....    .++..+..+++|+++++++++-
T Consensus       236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence            1 111 11    34799999999998752    3455677789999999998764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.26  E-value=8.6e-12  Score=128.68  Aligned_cols=207  Identities=19%  Similarity=0.176  Sum_probs=147.0

Q ss_pred             CcccEEEcCCcccccCcccccCccCCceEecCccccccc-----ccCcEEEecCCCCCCCCCCcccCccccceeccccCC
Q 043839          150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLM-----QKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS  224 (415)
Q Consensus       150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l-----~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~  224 (415)
                      .+..+|+++++.++.+|..+.  .+|+.|++++..+..+     .+|++|++++|. ...+|..+.  .+|+.|++++|.
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~  252 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQGNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR  252 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhccCCCEEECCCCc-cccCChhhh--ccccEEECcCCc
Confidence            356788888888888887664  4788888887333322     478999998554 456776554  478999999988


Q ss_pred             -CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEcccc
Q 043839          225 -SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKL  301 (415)
Q Consensus       225 -~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l  301 (415)
                       ..+|..+.  .+|+.|++++|   ....+|..+.  ++|+.|++++ |      +|  +|  ..+|++|+.|++++|.+
T Consensus       253 L~~LP~~l~--s~L~~L~Ls~N---~L~~LP~~l~--~sL~~L~Ls~-N------~Lt~LP--~~lp~sL~~L~Ls~N~L  316 (754)
T PRK15370        253 ITELPERLP--SALQSLDLFHN---KISCLPENLP--EELRYLSVYD-N------SIRTLP--AHLPSGITHLNVQSNSL  316 (754)
T ss_pred             cCcCChhHh--CCCCEEECcCC---ccCccccccC--CCCcEEECCC-C------ccccCc--ccchhhHHHHHhcCCcc
Confidence             77777654  57999999887   3335665543  5899999988 5      23  44  12336799999999987


Q ss_pred             CCCCchhhcCCCCCCeEeecc--C-----CCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCC
Q 043839          302 MEDPMPTLEKLPLLEVLKLKQ--N-----SSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCI  374 (415)
Q Consensus       302 ~~~~~~~l~~l~~L~~L~l~~--~-----~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l  374 (415)
                      +. +|..+  .++|+.|++++  .     .-.++|+.|++++| .+..+|..+  .++|+.|++++|... .+|..+.  
T Consensus       317 t~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--  387 (754)
T PRK15370        317 TA-LPETL--PPGLKTLEAGENALTSLPASLPPELQVLDVSKN-QITVLPETL--PPTITTLDVSRNALT-NLPENLP--  387 (754)
T ss_pred             cc-CCccc--cccceeccccCCccccCChhhcCcccEEECCCC-CCCcCChhh--cCCcCEEECCCCcCC-CCCHhHH--
Confidence            53 44333  36888888877  1     12358999999998 677777644  368999999999765 6787664  


Q ss_pred             CCCCeEEEecCC
Q 043839          375 KNLCKLELHWPQ  386 (415)
Q Consensus       375 ~~L~~L~l~~c~  386 (415)
                      ++|+.|++++|.
T Consensus       388 ~sL~~LdLs~N~  399 (754)
T PRK15370        388 AALQIMQASRNN  399 (754)
T ss_pred             HHHHHHhhccCC
Confidence            368888888765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.22  E-value=1.2e-12  Score=119.99  Aligned_cols=243  Identities=16%  Similarity=0.097  Sum_probs=128.0

Q ss_pred             cCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCccCCceEecCc---------ccc
Q 043839          116 PLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLFHLKYLKLIT---------PLL  185 (415)
Q Consensus       116 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~---------~~i  185 (415)
                      +|....+....+.+..+.+    ..+++..|+.++.||.|||++|.|+ --|+.+..+..|..|-+-+         ..+
T Consensus        61 VP~~LP~~tveirLdqN~I----~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F  136 (498)
T KOG4237|consen   61 VPANLPPETVEIRLDQNQI----SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF  136 (498)
T ss_pred             CcccCCCcceEEEeccCCc----ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence            5555566777888888888    7788899999999999999999998 5566666666555543332         333


Q ss_pred             cccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEecccC---cchhc-------H
Q 043839          186 KLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGDLS---YHHSG-------V  253 (415)
Q Consensus       186 ~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~---~~~~~-------~  253 (415)
                      ++|..|+.|.+.-|.........+..+++|..|.+..+. ..++. .+..+..++++.+..+.-   -....       .
T Consensus       137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~  216 (498)
T KOG4237|consen  137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN  216 (498)
T ss_pred             hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence            444444444443222222222334444444444444444 33333 233444444444333310   00000       0


Q ss_pred             HHhhhccCCCcEEEeec-------Cccc---cccc--cc---------cc--CCCCCCCCceEEEEEccccCCCCchhhc
Q 043839          254 SKSLCELHKLECLKLVN-------EGKM---WQFS--RM---------IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLE  310 (415)
Q Consensus       254 ~~~l~~l~~L~~L~l~~-------~~~i---l~~l--~L---------lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~  310 (415)
                      +...+...-.....+..       .+.+   ++++  ++         .|  -|..+ ++|++|++++|+++..-..++.
T Consensus       217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L-~~L~~lnlsnN~i~~i~~~aFe  295 (498)
T KOG4237|consen  217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL-PNLRKLNLSNNKITRIEDGAFE  295 (498)
T ss_pred             hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc-ccceEeccCCCccchhhhhhhc
Confidence            00000000000000000       0000   1111  00         34  45667 7888888888887766667777


Q ss_pred             CCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcc
Q 043839          311 KLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAY  363 (415)
Q Consensus       311 ~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~  363 (415)
                      ....++.|.+..          ..++..|+.|++.+|....--|..+..+.+|.+|.+-.|+.
T Consensus       296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            777777777765          44556677777777633333445566666666666666653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.17  E-value=6.6e-12  Score=113.67  Aligned_cols=219  Identities=18%  Similarity=0.148  Sum_probs=141.3

Q ss_pred             HHHhccCCcccEEEcCCcccc-----cCcccccCccCCceEecCc------------------ccccccccCcEEEecCC
Q 043839          143 ENFCKKFKHLRVLNLGSAVLD-----LYPPGLENLFHLKYLKLIT------------------PLLKLMQKLMHLNFGSI  199 (415)
Q Consensus       143 ~~~~~~~~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~------------------~~i~~l~~L~~L~l~~~  199 (415)
                      ......+..++.++|+||.+.     .+...+.+.++|+.-++++                  +.+..+++|++|+|++|
T Consensus        23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            344566677777777777765     3334455566777777776                  55666789999999988


Q ss_pred             CCCCCCCCc----ccCccccceeccccCC------CC---------CccccCCCCCCCeEEEeccc--CcchhcHHHhhh
Q 043839          200 TMPSPPNNY----SSSLKDLIFISAVHPS------SC---------TPDILGRLPNVQTLRISGDL--SYHHSGVSKSLC  258 (415)
Q Consensus       200 ~~~~~~p~~----i~~l~~L~~L~l~~~~------~~---------~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~l~  258 (415)
                      .+....+..    +.+++.|++|.+.+|+      ..         ...-.++-++||++....|+  +.....+...+.
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ  182 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence            887766655    5678899999999998      11         22234566889999998885  223344566777


Q ss_pred             ccCCCcEEEeecCcccc-ccccccc-CCCCCCCCceEEEEEccccCCCCc----hhhcCCCCCCeEeecc----------
Q 043839          259 ELHKLECLKLVNEGKMW-QFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPM----PTLEKLPLLEVLKLKQ----------  322 (415)
Q Consensus       259 ~l~~L~~L~l~~~~~il-~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~~----------  322 (415)
                      ..+.|+.+.+.. |.|. +...++- .+..+ ++|+.|++.+|.++....    ..+..+++|+.|++++          
T Consensus       183 ~~~~leevr~~q-N~I~~eG~~al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  183 SHPTLEEVRLSQ-NGIRPEGVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             hccccceEEEec-ccccCchhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence            888999998887 4220 0000011 34567 899999999998765433    3444566777777765          


Q ss_pred             -----CCCCCcccEEEeccCCCcc----ceEEcCCCccCccEEEEecCcc
Q 043839          323 -----NSSFPLLKILHLKSMLWLE----EWTMGAGSMPKLESLILNPCAY  363 (415)
Q Consensus       323 -----~~~~~~L~~L~l~~~~~l~----~l~~~~~~l~~L~~L~l~~c~~  363 (415)
                           ...+|+|+.|.+.+|....    .+...+...|.|+.|++++|..
T Consensus       261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                 3346677777777663222    1223344566677777777665

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.06  E-value=1.4e-11  Score=113.13  Aligned_cols=209  Identities=16%  Similarity=0.095  Sum_probs=127.9

Q ss_pred             CCCceeEEEEEeCCCCCccCCCC---CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCC-cccccCccc-ccCc
Q 043839           98 SLANVKRCFILKDLTEFFPLEHS---DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGS-AVLDLYPPG-LENL  172 (415)
Q Consensus        98 ~~~~~r~l~l~~~~~~~~~~~~~---~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~lp~~-i~~l  172 (415)
                      .+...-.+.+. .+.+..++...   .++||.|.+..+.+    ..+-++.|..++.|..|-+-+ |+|+.+|+. +++|
T Consensus        65 LP~~tveirLd-qN~I~~iP~~aF~~l~~LRrLdLS~N~I----s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL  139 (498)
T KOG4237|consen   65 LPPETVEIRLD-QNQISSIPPGAFKTLHRLRRLDLSKNNI----SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL  139 (498)
T ss_pred             CCCcceEEEec-cCCcccCChhhccchhhhceecccccch----hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence            34555566666 66666666655   77777777777777    556667777777766655554 667766654 4456


Q ss_pred             cCCceEecCc--------ccccccccCcEEEecCCCCCCCCCC-cccCccccceeccccCC-------------------
Q 043839          173 FHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNN-YSSSLKDLIFISAVHPS-------------------  224 (415)
Q Consensus       173 ~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~-------------------  224 (415)
                      ..|+.|.+.-        ..+..+++|..|.+.+|.+ ..++. .+..+.+++++.+..+.                   
T Consensus       140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i  218 (498)
T KOG4237|consen  140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI  218 (498)
T ss_pred             HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence            6666655544        4455555555555553321 11221 12222222222221110                   


Q ss_pred             --------------------------------------------CCCc-cccCCCCCCCeEEEecccCcchhcHHHhhhc
Q 043839          225 --------------------------------------------SCTP-DILGRLPNVQTLRISGDLSYHHSGVSKSLCE  259 (415)
Q Consensus       225 --------------------------------------------~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~  259 (415)
                                                                  ...| .-++++++|++|++++|  .....-+.++..
T Consensus       219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN--~i~~i~~~aFe~  296 (498)
T KOG4237|consen  219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN--KITRIEDGAFEG  296 (498)
T ss_pred             hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC--ccchhhhhhhcc
Confidence                                                        1111 12566778888888777  455555666777


Q ss_pred             cCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc
Q 043839          260 LHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ  322 (415)
Q Consensus       260 l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  322 (415)
                      ..+++.|.+.. |      ++  +.  .+..+ .+|+.|+|++|+++...|..+..+..|.+|++-+
T Consensus       297 ~a~l~eL~L~~-N------~l~~v~~~~f~~l-s~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  297 AAELQELYLTR-N------KLEFVSSGMFQGL-SGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS  355 (498)
T ss_pred             hhhhhhhhcCc-c------hHHHHHHHhhhcc-ccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence            77777777776 4      33  33  56678 8899999999998888888888888888888866

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.04  E-value=4.9e-10  Score=117.61  Aligned_cols=232  Identities=20%  Similarity=0.133  Sum_probs=153.9

Q ss_pred             cCCCC-CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc--cccCccc-ccCccCCceEecCc--------c
Q 043839          116 PLEHS-DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV--LDLYPPG-LENLFHLKYLKLIT--------P  183 (415)
Q Consensus       116 ~~~~~-~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~lp~~-i~~l~~L~~L~l~~--------~  183 (415)
                      .+... ....|.+.+..+....    +  ..-..++.|++|-+.++.  +..++.. +..++.|++|||++        .
T Consensus       516 ~~~~~~~~~~rr~s~~~~~~~~----~--~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~  589 (889)
T KOG4658|consen  516 IPQVKSWNSVRRMSLMNNKIEH----I--AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS  589 (889)
T ss_pred             cccccchhheeEEEEeccchhh----c--cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence            44444 7788888888877632    1  122344579999999886  5566654 55799999999995        7


Q ss_pred             cccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccC
Q 043839          184 LLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELH  261 (415)
Q Consensus       184 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~  261 (415)
                      .|+++-+||+|+++ .+....+|.++++++.|++|++..+.  ..++.....+++||+|.+..............+..+.
T Consensus       590 ~I~~Li~LryL~L~-~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le  668 (889)
T KOG4658|consen  590 SIGELVHLRYLDLS-DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE  668 (889)
T ss_pred             HHhhhhhhhccccc-CCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence            78999999999999 66677999999999999999999988  4555666679999999998763223344455667777


Q ss_pred             CCcEEEeecCc-cccccc-------------c-----c--cc-CCCCCCCCceEEEEEccccCCCCchhhcC------CC
Q 043839          262 KLECLKLVNEG-KMWQFS-------------R-----M--IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEK------LP  313 (415)
Q Consensus       262 ~L~~L~l~~~~-~il~~l-------------~-----L--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~------l~  313 (415)
                      +|+.+.+...+ .+++.+             .     .  .+ .+..+ .+|+.|.+.+|.+..........      ++
T Consensus       669 ~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~  747 (889)
T KOG4658|consen  669 HLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSL-GNLEELSILDCGISEIVIEWEESLIVLLCFP  747 (889)
T ss_pred             chhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccc-cCcceEEEEcCCCchhhcccccccchhhhHH
Confidence            77777765511 111111             1     0  22 55667 88999999998764322211111      22


Q ss_pred             CCCeEeecc---------CCCCCcccEEEeccCCCccceEEcCCCccCccE
Q 043839          314 LLEVLKLKQ---------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLES  355 (415)
Q Consensus       314 ~L~~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~  355 (415)
                      ++..+.+.+         ....|+|+.|.+..|+.++++......+..++.
T Consensus       748 ~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~  798 (889)
T KOG4658|consen  748 NLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE  798 (889)
T ss_pred             HHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence            222222222         234578888888888777765544444444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=8.6e-11  Score=109.38  Aligned_cols=228  Identities=20%  Similarity=0.185  Sum_probs=122.7

Q ss_pred             hccCCcccEEEcCCcccccCc--ccccCccCCceEecCc----------ccccccccCcEEEecCCCCCCCCCCc-ccCc
Q 043839          146 CKKFKHLRVLNLGSAVLDLYP--PGLENLFHLKYLKLIT----------PLLKLMQKLMHLNFGSITMPSPPNNY-SSSL  212 (415)
Q Consensus       146 ~~~~~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~l~~----------~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l  212 (415)
                      =++++.|+...|.++.+...+  .....|++++.|||+.          .-+..+++|+.|+++.|.+....-.. -..+
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            346677777777777766444  2455677777777776          33345666666666644432211111 1234


Q ss_pred             cccceeccccCC---CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc---CCCC
Q 043839          213 KDLIFISAVHPS---SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL---SEYK  286 (415)
Q Consensus       213 ~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp---~~~~  286 (415)
                      +.|+.|.+..|+   ..+...+..+|+|+.|++..|.  .......+-..++.|+.|++++ |.++.    ++   ..+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~~~i~~~L~~LdLs~-N~li~----~~~~~~~~~  269 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE--IILIKATSTKILQTLQELDLSN-NNLID----FDQGYKVGT  269 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc--ccceecchhhhhhHHhhccccC-Ccccc----ccccccccc
Confidence            556666666665   2233334455666666666652  1111111222344555555555 31100    22   3344


Q ss_pred             CCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceE--EcCCCccCccEEEEecCccc
Q 043839          287 FPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWT--MGAGSMPKLESLILNPCAYL  364 (415)
Q Consensus       287 lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~~  364 (415)
                      + +.|+.|.++.|.+.......      -..++.  ...||+|++|.+..| ++.+|+  ..+..+++|+.|.+..++..
T Consensus       270 l-~~L~~Lnls~tgi~si~~~d------~~s~~k--t~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  270 L-PGLNQLNLSSTGIASIAEPD------VESLDK--THTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             c-cchhhhhccccCcchhcCCC------ccchhh--hcccccceeeecccC-ccccccccchhhccchhhhhhccccccc
Confidence            5 55555555555443211100      011111  357899999999999 666666  35678889999999888865


Q ss_pred             CCCh----hhhcCCCCCCeEEEecCChhhH
Q 043839          365 RKLP----EELWCIKNLCKLELHWPQPHYR  390 (415)
Q Consensus       365 ~~lp----~~l~~l~~L~~L~l~~c~~~~~  390 (415)
                      ..-.    ..|...++|..|+=..|....+
T Consensus       340 ~e~~~a~~~VIAr~~~l~~LN~~di~p~eR  369 (505)
T KOG3207|consen  340 KETDTAKLLVIARISQLVKLNDVDISPNER  369 (505)
T ss_pred             ccccceeEEeeeehhhhhhhcccccChHHh
Confidence            4111    2355566666666555555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=3.4e-10  Score=100.64  Aligned_cols=169  Identities=22%  Similarity=0.195  Sum_probs=86.0

Q ss_pred             CcEEEecCCCCCC-CCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEE
Q 043839          191 LMHLNFGSITMPS-PPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLK  267 (415)
Q Consensus       191 L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~  267 (415)
                      |++||++...+.. .+...+..+.+|+.|.+.+..  ..+...+.+-.+|+.|+++.+..-...+..--+.+++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            5666665222211 122224556666666666665  4444455566666777776663111222223345666677777


Q ss_pred             eecCccccccccccc-CCCCCCCCceEEEEEccc--cCCCCchhh-cCCCCCCeEeecc-----------CCCCCcccEE
Q 043839          268 LVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTK--LMEDPMPTL-EKLPLLEVLKLKQ-----------NSSFPLLKIL  332 (415)
Q Consensus       268 l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~--l~~~~~~~l-~~l~~L~~L~l~~-----------~~~~~~L~~L  332 (415)
                      ++|++.+-+.   +. .+.+..++|+.|+++++.  +.....+.+ .++|+|..|++++           ...|+.|++|
T Consensus       267 lsWc~l~~~~---Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  267 LSWCFLFTEK---VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             chHhhccchh---hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            7662210000   11 112222667777777773  222233333 3566666666654           3345666666


Q ss_pred             EeccCCCcc-ceEEcCCCccCccEEEEecCc
Q 043839          333 HLKSMLWLE-EWTMGAGSMPKLESLILNPCA  362 (415)
Q Consensus       333 ~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~  362 (415)
                      .++.|..+. +....++..|+|.+|++.+|-
T Consensus       344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  344 SLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            666665544 223455666777777776664

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=1.5e-10  Score=102.80  Aligned_cols=173  Identities=18%  Similarity=0.169  Sum_probs=132.4

Q ss_pred             cccceeccccCC---CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCC
Q 043839          213 KDLIFISAVHPS---SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFP  288 (415)
Q Consensus       213 ~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp  288 (415)
                      ++||+|+++...   ..+-..+..|.+|+.|.+.+.  ...+.+...++.-.+|+.|+++.++++=+. . +. .+..+ 
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~--~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-~-~~ll~~sc-  259 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL--RLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-A-LQLLLSSC-  259 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc--ccCcHHHHHHhccccceeeccccccccchh-H-HHHHHHhh-
Confidence            469999998877   555566788999999999999  678888899999999999999984321000 0 22 34578 


Q ss_pred             CCceEEEEEccccCCCCchh-hcC-CCCCCeEeecc-------------CCCCCcccEEEeccCCCccc-eEEcCCCccC
Q 043839          289 PTLTQLSLSNTKLMEDPMPT-LEK-LPLLEVLKLKQ-------------NSSFPLLKILHLKSMLWLEE-WTMGAGSMPK  352 (415)
Q Consensus       289 ~~L~~L~l~~~~l~~~~~~~-l~~-l~~L~~L~l~~-------------~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~  352 (415)
                      ..|..|++++|.+..+.... +.. -++|+.|+++|             ...+|+|.+|++++|..++. ....+..++.
T Consensus       260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~  339 (419)
T KOG2120|consen  260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY  339 (419)
T ss_pred             hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence            99999999999876544332 222 37899999998             45789999999999977773 3345778999


Q ss_pred             ccEEEEecCcccCCChh---hhcCCCCCCeEEEecCChhhHhh
Q 043839          353 LESLILNPCAYLRKLPE---ELWCIKNLCKLELHWPQPHYRCN  392 (415)
Q Consensus       353 L~~L~l~~c~~~~~lp~---~l~~l~~L~~L~l~~c~~~~~~~  392 (415)
                      |++|.++.|..+  .|+   .+...|+|.+|++.+|-.+...+
T Consensus       340 L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt~me  380 (419)
T KOG2120|consen  340 LQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDTTME  380 (419)
T ss_pred             heeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCchHHH
Confidence            999999999865  343   35678999999999988764433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=3.8e-09  Score=98.61  Aligned_cols=166  Identities=26%  Similarity=0.258  Sum_probs=84.3

Q ss_pred             ccccceeccccCC-CCCc--cccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc-cc----C
Q 043839          212 LKDLIFISAVHPS-SCTP--DILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM-IL----S  283 (415)
Q Consensus       212 l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L-lp----~  283 (415)
                      +.+|+...+..+. ...+  .....|++++.|+++.|--.....+......+++|+.|+++. |      +| .|    .
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-N------rl~~~~~s~~  192 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-N------RLSNFISSNT  192 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-c------cccCCccccc
Confidence            4444444444444 2222  234456666666666652112233334445666666666665 4      33 22    1


Q ss_pred             CCCCCCCceEEEEEccccCCCC-chhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceE--EcCCCc
Q 043839          284 EYKFPPTLTQLSLSNTKLMEDP-MPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWT--MGAGSM  350 (415)
Q Consensus       284 ~~~lp~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~--~~~~~l  350 (415)
                      -..+ ++|+.|.++.|.+++.. ...+..+|+|+.|++..          ...+..|++|+|++|+.+. .+  ...+.+
T Consensus       193 ~~~l-~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l  270 (505)
T KOG3207|consen  193 TLLL-SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTL  270 (505)
T ss_pred             hhhh-hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccc
Confidence            1235 66667777777665532 23344566666666655          2223456666666663332 22  345566


Q ss_pred             cCccEEEEecCcccC-CChhh-----hcCCCCCCeEEEecCC
Q 043839          351 PKLESLILNPCAYLR-KLPEE-----LWCIKNLCKLELHWPQ  386 (415)
Q Consensus       351 ~~L~~L~l~~c~~~~-~lp~~-----l~~l~~L~~L~l~~c~  386 (415)
                      |.|+.|+++.|.... ..|.+     ...+++|++|++...+
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence            666666666665432 22322     2335666666666555

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.62  E-value=3.1e-08  Score=84.06  Aligned_cols=121  Identities=20%  Similarity=0.180  Sum_probs=41.7

Q ss_pred             cCCcccEEEcCCcccccCccccc-CccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcc-cCccccceec
Q 043839          148 KFKHLRVLNLGSAVLDLYPPGLE-NLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYS-SSLKDLIFIS  219 (415)
Q Consensus       148 ~~~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i-~~l~~L~~L~  219 (415)
                      +...+++|+|+++.++.+. .++ .+.+|+.|++++      +.+..+++|++|++++|. ...+..++ ..+++|++|.
T Consensus        17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCC-CCccccchHHhCCcCCEEE
Confidence            3344566666666655432 233 345555555555      455566777777777444 34454444 3578888888


Q ss_pred             cccCC---CCCccccCCCCCCCeEEEecccCcchhc-HHHhhhccCCCcEEEeec
Q 043839          220 AVHPS---SCTPDILGRLPNVQTLRISGDLSYHHSG-VSKSLCELHKLECLKLVN  270 (415)
Q Consensus       220 l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~l~~L~~L~l~~  270 (415)
                      +.++.   ..-...+..+++|+.|++.+|+...... -...+..+|+|+.||-..
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            88877   2234556778888888888874111111 223456777888777544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.62  E-value=2e-08  Score=89.69  Aligned_cols=121  Identities=26%  Similarity=0.264  Sum_probs=74.0

Q ss_pred             CCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCC
Q 043839          234 LPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLP  313 (415)
Q Consensus       234 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~  313 (415)
                      -+.|+++++++|   ....+.++..-.+.++.|+++. |.+.+    +..+..+ ++|+.|++++|.++ ..-.+-.++.
T Consensus       283 Wq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~-N~i~~----v~nLa~L-~~L~~LDLS~N~Ls-~~~Gwh~KLG  352 (490)
T KOG1259|consen  283 WQELTELDLSGN---LITQIDESVKLAPKLRRLILSQ-NRIRT----VQNLAEL-PQLQLLDLSGNLLA-ECVGWHLKLG  352 (490)
T ss_pred             Hhhhhhcccccc---chhhhhhhhhhccceeEEeccc-cceee----ehhhhhc-ccceEeecccchhH-hhhhhHhhhc
Confidence            355666666665   4455555666666666666666 42211    2234456 66777777776653 2233334556


Q ss_pred             CCCeEeecc--------CCCCCcccEEEeccCCCccceE--EcCCCccCccEEEEecCcccC
Q 043839          314 LLEVLKLKQ--------NSSFPLLKILHLKSMLWLEEWT--MGAGSMPKLESLILNPCAYLR  365 (415)
Q Consensus       314 ~L~~L~l~~--------~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~~~  365 (415)
                      |.++|.+++        .+.+-+|..|++++| +++.+.  ..+|++|.|+.+.+.+||..+
T Consensus       353 NIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  353 NIKTLKLAQNKIETLSGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             CEeeeehhhhhHhhhhhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCccc
Confidence            666666655        334456777777887 555443  467888889888888888764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.62  E-value=1.3e-08  Score=92.66  Aligned_cols=214  Identities=21%  Similarity=0.192  Sum_probs=143.1

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc----cCccc-------ccCccCCceEecCc-------
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD----LYPPG-------LENLFHLKYLKLIT-------  182 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~lp~~-------i~~l~~L~~L~l~~-------  182 (415)
                      ...+..+.++++....-...+....+.+-+.|+..++++....    .+|+.       +-.+++|++++||+       
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            5566666676666543223445556777777777777765421    44432       23456777777777       


Q ss_pred             -----ccccccccCcEEEecCCCCCCC--------------CCCcccCccccceeccccCC------CCCccccCCCCCC
Q 043839          183 -----PLLKLMQKLMHLNFGSITMPSP--------------PNNYSSSLKDLIFISAVHPS------SCTPDILGRLPNV  237 (415)
Q Consensus       183 -----~~i~~l~~L~~L~l~~~~~~~~--------------~p~~i~~l~~L~~L~l~~~~------~~~~~~l~~l~~L  237 (415)
                           .-+.++..|++|.+. ||..+.              .-.-+++-+.|+++....+.      ..+...+...+.|
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~-N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLN-NCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhh-cCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence                 556778999999999 554332              12234567789999888777      3344557788999


Q ss_pred             CeEEEecccCc--chhcHHHhhhccCCCcEEEeecCccc-cccccc-cc-CCCCCCCCceEEEEEccccCCCCchhh---
Q 043839          238 QTLRISGDLSY--HHSGVSKSLCELHKLECLKLVNEGKM-WQFSRM-IL-SEYKFPPTLTQLSLSNTKLMEDPMPTL---  309 (415)
Q Consensus       238 ~~L~l~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~i-l~~l~L-lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l---  309 (415)
                      +.+.+..|...  ....+...+..+++|+.|++.. |-+ .+. .. +. .+..+ ++|+.|++++|.+.......+   
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~eg-s~~LakaL~s~-~~L~El~l~dcll~~~Ga~a~~~a  264 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEG-SVALAKALSSW-PHLRELNLGDCLLENEGAIAFVDA  264 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeeccc-chhhhHH-HHHHHHHhccc-chheeecccccccccccHHHHHHH
Confidence            99999888521  1234567888999999999988 411 000 00 23 44456 799999999998766443333   


Q ss_pred             --cCCCCCCeEeecc--------------CCCCCcccEEEeccCC
Q 043839          310 --EKLPLLEVLKLKQ--------------NSSFPLLKILHLKSML  338 (415)
Q Consensus       310 --~~l~~L~~L~l~~--------------~~~~~~L~~L~l~~~~  338 (415)
                        ...|+|++|.+.+              ...-|.|+.|++++|.
T Consensus       265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence              2479999999987              3447899999999994

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.60  E-value=4.5e-09  Score=97.61  Aligned_cols=264  Identities=19%  Similarity=0.154  Sum_probs=143.9

Q ss_pred             CceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc-cc-cCcccc-cCccCCceEecCc----------cccccc
Q 043839          122 MYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV-LD-LYPPGL-ENLFHLKYLKLIT----------PLLKLM  188 (415)
Q Consensus       122 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~-~lp~~i-~~l~~L~~L~l~~----------~~i~~l  188 (415)
                      ..+|.|.+.+.....  ..-+..+..+++++..|.+.+|. ++ ..-.++ ..+..|+++++..          .-...+
T Consensus       138 g~lk~LSlrG~r~v~--~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC  215 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVG--DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC  215 (483)
T ss_pred             cccccccccccccCC--cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence            356667776666543  44455666777777777777776 33 111122 2455666666654          122345


Q ss_pred             ccCcEEEecCCCCCCC--CCCcccCccccceeccccCC----CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCC
Q 043839          189 QKLMHLNFGSITMPSP--PNNYSSSLKDLIFISAVHPS----SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHK  262 (415)
Q Consensus       189 ~~L~~L~l~~~~~~~~--~p~~i~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~  262 (415)
                      ++|++|+++++.....  +-.....+..++.+.+.+|.    ..+...-+.+..+.++++..|.......+...-..+..
T Consensus       216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            6666666665543211  11112334445555444544    11111112233344444334320111111111223445


Q ss_pred             CcEEEeecCccccccccccc--C-CCCCCCCceEEEEEccc-cCCCCchhhc-CCCCCCeEeecc------------CCC
Q 043839          263 LECLKLVNEGKMWQFSRMIL--S-EYKFPPTLTQLSLSNTK-LMEDPMPTLE-KLPLLEVLKLKQ------------NSS  325 (415)
Q Consensus       263 L~~L~l~~~~~il~~l~Llp--~-~~~lp~~L~~L~l~~~~-l~~~~~~~l~-~l~~L~~L~l~~------------~~~  325 (415)
                      |+.++.+...++=+    .+  . -.+. ++|+.|.+.+|+ ++......++ +++.|+.+++.+            ...
T Consensus       296 lq~l~~s~~t~~~d----~~l~aLg~~~-~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  296 LQVLCYSSCTDITD----EVLWALGQHC-HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhhhcccCCCCCch----HHHHHHhcCC-CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            55555554111000    11  1 1245 777777777774 3333334444 567777777766            456


Q ss_pred             CCcccEEEeccCCCccce-----EEcCCCccCccEEEEecCcccC-CChhhhcCCCCCCeEEEecCChhhHhh
Q 043839          326 FPLLKILHLKSMLWLEEW-----TMGAGSMPKLESLILNPCAYLR-KLPEELWCIKNLCKLELHWPQPHYRCN  392 (415)
Q Consensus       326 ~~~L~~L~l~~~~~l~~l-----~~~~~~l~~L~~L~l~~c~~~~-~lp~~l~~l~~L~~L~l~~c~~~~~~~  392 (415)
                      ++.|+.|.++.|..++.-     ...-.++..|+.+.+++|+.+. ..-+.+..+++|+.+++.+|...+++-
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~  443 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA  443 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence            788999999998766633     3334678889999999999765 344667889999999999998765543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.54  E-value=1.4e-07  Score=92.19  Aligned_cols=168  Identities=24%  Similarity=0.289  Sum_probs=104.2

Q ss_pred             cccCcEEEecCCCCCCCCCCcccCcc-ccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcE
Q 043839          188 MQKLMHLNFGSITMPSPPNNYSSSLK-DLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLEC  265 (415)
Q Consensus       188 l~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~  265 (415)
                      ++.++.|++. +.....+|...+.+. +|+.|++.++. ..++..++.+++|+.|++..|   ....++...+..++|+.
T Consensus       115 ~~~l~~L~l~-~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N---~l~~l~~~~~~~~~L~~  190 (394)
T COG4886         115 LTNLTSLDLD-NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN---DLSDLPKLLSNLSNLNN  190 (394)
T ss_pred             ccceeEEecC-CcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc---hhhhhhhhhhhhhhhhh
Confidence            3455666666 445556666666664 77777777776 666566677777777777776   45555555556677777


Q ss_pred             EEeecCccccccccccc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc---------CCCCCcccEEEec
Q 043839          266 LKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKILHLK  335 (415)
Q Consensus       266 L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~~L~l~  335 (415)
                      |++++ +.+-.    +| .+... ..|+++.+++|.. ...+..++++.++..+.+.+         .+.+++++.|+++
T Consensus       191 L~ls~-N~i~~----l~~~~~~~-~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s  263 (394)
T COG4886         191 LDLSG-NKISD----LPPEIELL-SALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS  263 (394)
T ss_pred             eeccC-Ccccc----Cchhhhhh-hhhhhhhhcCCcc-eecchhhhhcccccccccCCceeeeccchhccccccceeccc
Confidence            77776 41100    44 33333 5577777777742 24455556666666665443         3445667777777


Q ss_pred             cCCCccceEEcCCCccCccEEEEecCcccCCCh
Q 043839          336 SMLWLEEWTMGAGSMPKLESLILNPCAYLRKLP  368 (415)
Q Consensus       336 ~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp  368 (415)
                      +| .+..++. ++.+.+|+.|+++++......|
T Consensus       264 ~n-~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         264 NN-QISSISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cc-ccccccc-ccccCccCEEeccCccccccch
Confidence            77 6666665 7788888888888877664433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.47  E-value=6.3e-09  Score=100.17  Aligned_cols=154  Identities=18%  Similarity=0.215  Sum_probs=73.9

Q ss_pred             cEEEcCCcccccCcccccCccCCceEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-
Q 043839          153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-  224 (415)
Q Consensus       153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-  224 (415)
                      ...|++.|.+..+|..++.+..|..+.+..       ..+.++..|.+|+++ .+....+|..+..|+ |+.|-++++. 
T Consensus        78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls-~NqlS~lp~~lC~lp-Lkvli~sNNkl  155 (722)
T KOG0532|consen   78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLS-SNQLSHLPDGLCDLP-LKVLIVSNNKL  155 (722)
T ss_pred             hhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhc-cchhhcCChhhhcCc-ceeEEEecCcc
Confidence            455666666666666555544444444433       333334444444444 333344555554443 5555555555 


Q ss_pred             CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCCCceEEEEEccccCC
Q 043839          225 SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLME  303 (415)
Q Consensus       225 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~  303 (415)
                      ..+|..++.+..|..|+.+.|   ....+|+.++.+.+|+.|.+.. |.++.    +| .+..+  .|.+|++++|++ .
T Consensus       156 ~~lp~~ig~~~tl~~ld~s~n---ei~slpsql~~l~slr~l~vrR-n~l~~----lp~El~~L--pLi~lDfScNki-s  224 (722)
T KOG0532|consen  156 TSLPEEIGLLPTLAHLDVSKN---EIQSLPSQLGYLTSLRDLNVRR-NHLED----LPEELCSL--PLIRLDFSCNKI-S  224 (722)
T ss_pred             ccCCcccccchhHHHhhhhhh---hhhhchHHhhhHHHHHHHHHhh-hhhhh----CCHHHhCC--ceeeeecccCce-e
Confidence            555555555555555555554   3444555555555555555444 31111    44 44433  255555555554 2


Q ss_pred             CCchhhcCCCCCCeEe
Q 043839          304 DPMPTLEKLPLLEVLK  319 (415)
Q Consensus       304 ~~~~~l~~l~~L~~L~  319 (415)
                      .+|-.+.++..|++|.
T Consensus       225 ~iPv~fr~m~~Lq~l~  240 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQ  240 (722)
T ss_pred             ecchhhhhhhhheeee
Confidence            3444444444443333

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.45  E-value=4.3e-08  Score=87.55  Aligned_cols=117  Identities=21%  Similarity=0.289  Sum_probs=90.5

Q ss_pred             ccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc-CC
Q 043839          209 SSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL-SE  284 (415)
Q Consensus       209 i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp-~~  284 (415)
                      +...+.|++++++++. ..+-.++.-+|+++.|+++.|+  .. .+ .+++.+++|+.|++++ |      .|  +. |-
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~--i~-~v-~nLa~L~~L~~LDLS~-N------~Ls~~~Gwh  348 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR--IR-TV-QNLAELPQLQLLDLSG-N------LLAECVGWH  348 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccc--ee-ee-hhhhhcccceEeeccc-c------hhHhhhhhH
Confidence            3445678888888888 7777777778899999998883  22 22 2377888899999988 4      33  44 66


Q ss_pred             CCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc-----------CCCCCcccEEEeccCCC
Q 043839          285 YKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ-----------NSSFPLLKILHLKSMLW  339 (415)
Q Consensus       285 ~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-----------~~~~~~L~~L~l~~~~~  339 (415)
                      ..+ .++++|.+++|.+  +..+.++++-+|..|++.+           .+.+|+|+.+.+.+|+.
T Consensus       349 ~KL-GNIKtL~La~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  349 LKL-GNIKTLKLAQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhh-cCEeeeehhhhhH--hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            678 8899999999876  4567788888899999887           78899999999999853

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.45  E-value=1.1e-08  Score=98.43  Aligned_cols=153  Identities=22%  Similarity=0.261  Sum_probs=110.4

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCC
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSIT  200 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~  200 (415)
                      +..|.++.++.+...     ..+..+.++..|.+|+++.|.+..+|..++.|+                 |+.|-++ |+
T Consensus        97 f~~Le~liLy~n~~r-----~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-----------------Lkvli~s-NN  153 (722)
T KOG0532|consen   97 FVSLESLILYHNCIR-----TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-----------------LKVLIVS-NN  153 (722)
T ss_pred             HHHHHHHHHHhccce-----ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-----------------ceeEEEe-cC
Confidence            555666666665542     245566667777777777777777776666543                 5555566 77


Q ss_pred             CCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccc
Q 043839          201 MPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSR  279 (415)
Q Consensus       201 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~  279 (415)
                      ....+|..++.+..|..|+.+.|. ..+|..++.+.+|+.|.++.|   ....+|+.+..+ .|..|+++. |      +
T Consensus       154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn---~l~~lp~El~~L-pLi~lDfSc-N------k  222 (722)
T KOG0532|consen  154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN---HLEDLPEELCSL-PLIRLDFSC-N------K  222 (722)
T ss_pred             ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh---hhhhCCHHHhCC-ceeeeeccc-C------c
Confidence            777888888888888888888888 888888888888888888886   566777777744 477888887 6      4


Q ss_pred             c--cc-CCCCCCCCceEEEEEccccCCCCchhh
Q 043839          280 M--IL-SEYKFPPTLTQLSLSNTKLMEDPMPTL  309 (415)
Q Consensus       280 L--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l  309 (415)
                      +  +| .|.++ ..|++|-|.+|.+. .+|..+
T Consensus       223 is~iPv~fr~m-~~Lq~l~LenNPLq-SPPAqI  253 (722)
T KOG0532|consen  223 ISYLPVDFRKM-RHLQVLQLENNPLQ-SPPAQI  253 (722)
T ss_pred             eeecchhhhhh-hhheeeeeccCCCC-CChHHH
Confidence            4  88 88888 88888888888874 444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.41  E-value=1.8e-07  Score=91.32  Aligned_cols=167  Identities=25%  Similarity=0.249  Sum_probs=118.6

Q ss_pred             HHhccCCcccEEEcCCcccccCcccccCcc-CCceEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCcccc
Q 043839          144 NFCKKFKHLRVLNLGSAVLDLYPPGLENLF-HLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDL  215 (415)
Q Consensus       144 ~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L  215 (415)
                      ..+..++.++.|++.++.++.+|..+..+. +|+.|++++       ..++.+++|+.|+++ .+....+|...+.+++|
T Consensus       110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~-~N~l~~l~~~~~~~~~L  188 (394)
T COG4886         110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS-FNDLSDLPKLLSNLSNL  188 (394)
T ss_pred             hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccC-Cchhhhhhhhhhhhhhh
Confidence            335556788999999999988888888775 888888888       256778888888888 55556677666677888


Q ss_pred             ceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCCCceE
Q 043839          216 IFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQ  293 (415)
Q Consensus       216 ~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~  293 (415)
                      +.|.++++. ..+|..+.....|++|.+.++   .....+..+..+.++..+.+.. +.+..    ++ .+..+ ++++.
T Consensus       189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N---~~~~~~~~~~~~~~l~~l~l~~-n~~~~----~~~~~~~l-~~l~~  259 (394)
T COG4886         189 NNLDLSGNKISDLPPEIELLSALEELDLSNN---SIIELLSSLSNLKNLSGLELSN-NKLED----LPESIGNL-SNLET  259 (394)
T ss_pred             hheeccCCccccCchhhhhhhhhhhhhhcCC---cceecchhhhhcccccccccCC-ceeee----ccchhccc-cccce
Confidence            888888888 777776666677888888876   2444555666667777666555 31100    35 66677 77888


Q ss_pred             EEEEccccCCCCchhhcCCCCCCeEeecc
Q 043839          294 LSLSNTKLMEDPMPTLEKLPLLEVLKLKQ  322 (415)
Q Consensus       294 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  322 (415)
                      |++++|.+... +. ++.+.+|+.|++++
T Consensus       260 L~~s~n~i~~i-~~-~~~~~~l~~L~~s~  286 (394)
T COG4886         260 LDLSNNQISSI-SS-LGSLTNLRELDLSG  286 (394)
T ss_pred             ecccccccccc-cc-ccccCccCEEeccC
Confidence            88888876432 22 77777777777765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.34  E-value=4e-07  Score=77.29  Aligned_cols=122  Identities=27%  Similarity=0.310  Sum_probs=36.9

Q ss_pred             cccCcEEEecCCCCCCCCCCccc-CccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhh-hccCCCc
Q 043839          188 MQKLMHLNFGSITMPSPPNNYSS-SLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSL-CELHKLE  264 (415)
Q Consensus       188 l~~L~~L~l~~~~~~~~~p~~i~-~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~  264 (415)
                      ..++++|++.++.+. .+ +.++ .+.+|+.|++++|. ..+ +.+..+++|++|++++|   ....+.+.+ ..+++|+
T Consensus        18 ~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N---~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   18 PVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNN---RISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS------S-CHHHHHH-TT--
T ss_pred             ccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCC---CCCccccchHHhCCcCC
Confidence            344555555533322 22 2344 35666666666666 332 34556677777777776   222332233 2456666


Q ss_pred             EEEeecCccc--ccccccccCCCCCCCCceEEEEEccccCCCC---chhhcCCCCCCeEee
Q 043839          265 CLKLVNEGKM--WQFSRMILSEYKFPPTLTQLSLSNTKLMEDP---MPTLEKLPLLEVLKL  320 (415)
Q Consensus       265 ~L~l~~~~~i--l~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~---~~~l~~l~~L~~L~l  320 (415)
                      .|+++. |.|  ++.   +-.+..+ ++|+.|++.+|+++...   ...+..+|+|+.||-
T Consensus        92 ~L~L~~-N~I~~l~~---l~~L~~l-~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   92 ELYLSN-NKISDLNE---LEPLSSL-PKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EEE-TT-S---SCCC---CGGGGG--TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EEECcC-CcCCChHH---hHHHHcC-CCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            666665 421  000   1134456 77777777777765431   124456666666654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.19  E-value=1.5e-06  Score=60.34  Aligned_cols=59  Identities=27%  Similarity=0.287  Sum_probs=45.9

Q ss_pred             CcccEEEeccCCCccceEE-cCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          327 PLLKILHLKSMLWLEEWTM-GAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       327 ~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      |+|++|++++| .++.+|. .+.++++|++|++++|....--|..+..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            57888888888 7888874 57888899999998887754333567888889999888874

...

>PLN03150 hypothetical protein; Provisional

Probab=98.12  E-value=4.3e-06  Score=86.07  Aligned_cols=98  Identities=18%  Similarity=0.210  Sum_probs=76.1

Q ss_pred             ccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc---cc-CCCCC
Q 043839          214 DLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM---IL-SEYKF  287 (415)
Q Consensus       214 ~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L---lp-~~~~l  287 (415)
                      .++.|++.++.  +.+|..++.+++|+.|++++|  ...+.+|..++.+++|+.|+++. |      ++   +| .+..+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N--~l~g~iP~~~~~l~~L~~LdLs~-N------~lsg~iP~~l~~L  489 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN--SIRGNIPPSLGSITSLEVLDLSY-N------SFNGSIPESLGQL  489 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCC--cccCcCChHHhCCCCCCEEECCC-C------CCCCCCchHHhcC
Confidence            36778888777  678888888888888888888  56678888888888888888887 5      33   67 78888


Q ss_pred             CCCceEEEEEccccCCCCchhhcCC-CCCCeEeec
Q 043839          288 PPTLTQLSLSNTKLMEDPMPTLEKL-PLLEVLKLK  321 (415)
Q Consensus       288 p~~L~~L~l~~~~l~~~~~~~l~~l-~~L~~L~l~  321 (415)
                       ++|+.|++++|.+.+.+|..++.. .++..+++.
T Consensus       490 -~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~  523 (623)
T PLN03150        490 -TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT  523 (623)
T ss_pred             -CCCCEEECcCCcccccCChHHhhccccCceEEec
Confidence             899999999998888888877653 344444443

>PLN03150 hypothetical protein; Provisional

Probab=98.11  E-value=4.5e-06  Score=85.94  Aligned_cols=96  Identities=20%  Similarity=0.167  Sum_probs=79.5

Q ss_pred             ceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEec
Q 043839          291 LTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNP  360 (415)
Q Consensus       291 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~  360 (415)
                      ++.|+|++|.+.+.+|..++.+++|+.|++++          .+.+++|+.|++++|.....+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            77888888888888888888899999998886          34567899999999966668898899999999999999


Q ss_pred             CcccCCChhhhcCC-CCCCeEEEecCC
Q 043839          361 CAYLRKLPEELWCI-KNLCKLELHWPQ  386 (415)
Q Consensus       361 c~~~~~lp~~l~~l-~~L~~L~l~~c~  386 (415)
                      |...+.+|..+... .++..+++.+++
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            99999999887653 466778777654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.10  E-value=1e-07  Score=88.82  Aligned_cols=253  Identities=19%  Similarity=0.143  Sum_probs=163.8

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc-cc-cCcccc-cCccCCceEecCc----------ccccc
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV-LD-LYPPGL-ENLFHLKYLKLIT----------PLLKL  187 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~-~lp~~i-~~l~~L~~L~l~~----------~~i~~  187 (415)
                      ++++..|.+.+....+  +..+...-..++.|+.|++..|. ++ .....+ ..+++|.||++++          .....
T Consensus       163 CpnIehL~l~gc~~iT--d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  163 CPNIEHLALYGCKKIT--DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             CCchhhhhhhcceecc--HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            8888888888887654  45556667889999999999965 66 333333 4688999999999          22334


Q ss_pred             cccCcEEEecCCCCCCCCC---CcccCccccceeccccCC----CCCccccCCCCCCCeEEEecccCcchhcHHHhhh-c
Q 043839          188 MQKLMHLNFGSITMPSPPN---NYSSSLKDLIFISAVHPS----SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLC-E  259 (415)
Q Consensus       188 l~~L~~L~l~~~~~~~~~p---~~i~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-~  259 (415)
                      +++++.+.+.||.. ...-   ..-+.+.-+..+++..|.    ..+...-..+..|+.|+.+++.. ..+.....++ .
T Consensus       241 ~~~l~~~~~kGC~e-~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~-~~d~~l~aLg~~  318 (483)
T KOG4341|consen  241 CKELEKLSLKGCLE-LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD-ITDEVLWALGQH  318 (483)
T ss_pred             chhhhhhhhccccc-ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC-CchHHHHHHhcC
Confidence            56666666664321 1110   001223334555555665    22233334578889999988852 3333334444 6


Q ss_pred             cCCCcEEEeecCccccccccc----cc-CCCCCCCCceEEEEEccccCCC--CchhhcCCCCCCeEeecc----------
Q 043839          260 LHKLECLKLVNEGKMWQFSRM----IL-SEYKFPPTLTQLSLSNTKLMED--PMPTLEKLPLLEVLKLKQ----------  322 (415)
Q Consensus       260 l~~L~~L~l~~~~~il~~l~L----lp-~~~~lp~~L~~L~l~~~~l~~~--~~~~l~~l~~L~~L~l~~----------  322 (415)
                      ..+|+.+.++.+.      +|    +. .-.+. +.|+.+++..|....+  +.+.-.+++.|+.|.++.          
T Consensus       319 ~~~L~~l~l~~c~------~fsd~~ft~l~rn~-~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~  391 (483)
T KOG4341|consen  319 CHNLQVLELSGCQ------QFSDRGFTMLGRNC-PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR  391 (483)
T ss_pred             CCceEEEeccccc------hhhhhhhhhhhcCC-hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh
Confidence            7889999888722      11    12 22345 8899999988864322  233334789999999885          


Q ss_pred             -----CCCCCcccEEEeccCCCccce-EEcCCCccCccEEEEecCcccCC--ChhhhcCCCCCCeEEEec
Q 043839          323 -----NSSFPLLKILHLKSMLWLEEW-TMGAGSMPKLESLILNPCAYLRK--LPEELWCIKNLCKLELHW  384 (415)
Q Consensus       323 -----~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~~~~--lp~~l~~l~~L~~L~l~~  384 (415)
                           ..+...|+.+.+++|+.+++- -.....+++|+.+++.+|.....  +-..-.++|+++...+.+
T Consensus       392 ~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a  461 (483)
T KOG4341|consen  392 HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA  461 (483)
T ss_pred             hhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence                 234567999999999888733 34577899999999999996543  334455688887666543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.06  E-value=1.8e-06  Score=76.38  Aligned_cols=218  Identities=14%  Similarity=0.083  Sum_probs=140.0

Q ss_pred             hccCCcccEEEcCCcccc-----cCcccccCccCCceEecCc------------------ccccccccCcEEEecCCCCC
Q 043839          146 CKKFKHLRVLNLGSAVLD-----LYPPGLENLFHLKYLKLIT------------------PLLKLMQKLMHLNFGSITMP  202 (415)
Q Consensus       146 ~~~~~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~------------------~~i~~l~~L~~L~l~~~~~~  202 (415)
                      +.-+..++.++|+||.+.     .+...|.+-.+|+..++++                  +.+-+|++|+..+++.|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            444677788888888765     3344455556777777776                  66778899999999988887


Q ss_pred             CCCCCc----ccCccccceeccccCC-CCC-----c---------cccCCCCCCCeEEEeccc--CcchhcHHHhhhccC
Q 043839          203 SPPNNY----SSSLKDLIFISAVHPS-SCT-----P---------DILGRLPNVQTLRISGDL--SYHHSGVSKSLCELH  261 (415)
Q Consensus       203 ~~~p~~----i~~l~~L~~L~l~~~~-~~~-----~---------~~l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~  261 (415)
                      ...|+.    |++-+.|.+|.+.+|+ +.+     -         .-..+-|.|++.....|+  +.........+..-.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            777764    5677889999998887 222     1         112345788888887774  111222333444556


Q ss_pred             CCcEEEeecCcccccc-c-cccc-CCCCCCCCceEEEEEccccCCCCchh----hcCCCCCCeEeecc------------
Q 043839          262 KLECLKLVNEGKMWQF-S-RMIL-SEYKFPPTLTQLSLSNTKLMEDPMPT----LEKLPLLEVLKLKQ------------  322 (415)
Q Consensus       262 ~L~~L~l~~~~~il~~-l-~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~~------------  322 (415)
                      +|+.+.+.. |.|-.. + .|+- .+..+ .+|+.|++..|.++-.....    +..++.|+.|.+..            
T Consensus       186 ~lk~vki~q-NgIrpegv~~L~~~gl~y~-~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~  263 (388)
T COG5238         186 NLKEVKIQQ-NGIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL  263 (388)
T ss_pred             CceeEEeee-cCcCcchhHHHHHHHHHHh-CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH
Confidence            888888887 533000 0 0000 22345 88999999999876543333    33457778888876            


Q ss_pred             ----CCCCCcccEEEeccCCCccceE-------EcCCCccCccEEEEecCcccC
Q 043839          323 ----NSSFPLLKILHLKSMLWLEEWT-------MGAGSMPKLESLILNPCAYLR  365 (415)
Q Consensus       323 ----~~~~~~L~~L~l~~~~~l~~l~-------~~~~~l~~L~~L~l~~c~~~~  365 (415)
                          .-.+|+|..|...+|..-..+.       ...+++|-|..|.+.+|....
T Consensus       264 ~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         264 RRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             HHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence                2346788888888874333221       234678888888888887543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=2.3e-06  Score=76.67  Aligned_cols=86  Identities=16%  Similarity=0.237  Sum_probs=52.9

Q ss_pred             CCCCCceEEEEEccccCCCC-chhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceE--EcCCCccCccEEEEecCc
Q 043839          286 KFPPTLTQLSLSNTKLMEDP-MPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWT--MGAGSMPKLESLILNPCA  362 (415)
Q Consensus       286 ~lp~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~  362 (415)
                      .| |++..+.+..|.+.... -..              ...+|.+..|.++.+ ++++|.  +.+..|++|..|.+.++|
T Consensus       197 ~F-pnv~sv~v~e~PlK~~s~ek~--------------se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  197 IF-PNVNSVFVCEGPLKTESSEKG--------------SEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             hc-ccchheeeecCcccchhhccc--------------CCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCc
Confidence            36 77778888777654321 111              234555556666665 666664  457788888888888888


Q ss_pred             ccCCChh------hhcCCCCCCeEEEecCCh
Q 043839          363 YLRKLPE------ELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       363 ~~~~lp~------~l~~l~~L~~L~l~~c~~  387 (415)
                      ....+-.      -++++++++.|+=+....
T Consensus       261 l~d~l~~~err~llIaRL~~v~vLNGskIss  291 (418)
T KOG2982|consen  261 LSDPLRGGERRFLLIARLTKVQVLNGSKISS  291 (418)
T ss_pred             ccccccCCcceEEEEeeccceEEecCcccch
Confidence            7654432      256677777776554433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=8.7e-06  Score=73.02  Aligned_cols=62  Identities=18%  Similarity=0.186  Sum_probs=44.0

Q ss_pred             CCCCCcccEEEeccCCCccceE--EcCCCccCccEEEEecCcccCCCh--hhhcCCCCCCeEEEecCC
Q 043839          323 NSSFPLLKILHLKSMLWLEEWT--MGAGSMPKLESLILNPCAYLRKLP--EELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       323 ~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~~~~lp--~~l~~l~~L~~L~l~~c~  386 (415)
                      ..-||++..+-+..|+ +....  .....+|.+--|++..+..- +..  ..+..++.|..|.+.+.|
T Consensus       195 ~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~id-swasvD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  195 SRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANNID-SWASVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             HhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcccccc-cHHHHHHHcCCchhheeeccCCc
Confidence            4458888888888884 33322  34567888888888877543 222  467889999999999887

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.78  E-value=2e-05  Score=54.62  Aligned_cols=56  Identities=25%  Similarity=0.297  Sum_probs=29.9

Q ss_pred             CceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcc-cccCccCCceEecC
Q 043839          122 MYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPP-GLENLFHLKYLKLI  181 (415)
Q Consensus       122 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~  181 (415)
                      |+|++|.+.++..    ..+.+..|..+++|++|++++|.++.++. .+.++++|++|+++
T Consensus         1 p~L~~L~l~~n~l----~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~   57 (61)
T PF13855_consen    1 PNLESLDLSNNKL----TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS   57 (61)
T ss_dssp             TTESEEEETSSTE----SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET
T ss_pred             CcCcEEECCCCCC----CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc
Confidence            3555666666554    44444556666666666666666654443 33444444444443

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.73  E-value=2e-05  Score=81.28  Aligned_cols=34  Identities=26%  Similarity=0.339  Sum_probs=13.8

Q ss_pred             CCceEEEEEccccCC-CCchhhcCCCCCCeEeecc
Q 043839          289 PTLTQLSLSNTKLME-DPMPTLEKLPLLEVLKLKQ  322 (415)
Q Consensus       289 ~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~  322 (415)
                      ++|+.|.+.+-.+.. .....+.++.+|++||++.
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR  229 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence            444444444433322 2223334444444444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.66  E-value=1.5e-05  Score=82.13  Aligned_cols=73  Identities=23%  Similarity=0.327  Sum_probs=56.9

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc---------ccccccccC
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT---------PLLKLMQKL  191 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~---------~~i~~l~~L  191 (415)
                      +|.||+|.+.+.....   ..+...+.++++|+.||+++++++.+ .+|++|++|+.|.+++         ..+.+|++|
T Consensus       147 LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L  222 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL  222 (699)
T ss_pred             CcccceEEecCceecc---hhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence            8899999888876642   33456688899999999999988877 6788888888888877         456667777


Q ss_pred             cEEEec
Q 043839          192 MHLNFG  197 (415)
Q Consensus       192 ~~L~l~  197 (415)
                      +.||++
T Consensus       223 ~vLDIS  228 (699)
T KOG3665|consen  223 RVLDIS  228 (699)
T ss_pred             Ceeecc
Confidence            777777

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.61  E-value=5.9e-05  Score=48.28  Aligned_cols=33  Identities=36%  Similarity=0.506  Sum_probs=20.5

Q ss_pred             CcccEEEcCCcccccCcccccCccCCceEecCc
Q 043839          150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT  182 (415)
Q Consensus       150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~  182 (415)
                      ++|++|++++|.++.+|..+++|++|++|++++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~   33 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSN   33 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence            457777777777777766666666666666654

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.56  E-value=5.8e-06  Score=82.72  Aligned_cols=230  Identities=23%  Similarity=0.178  Sum_probs=109.8

Q ss_pred             HHhccCCcccEEEcCCcc-ccc--CcccccCccCCceEecCc-------------ccccccccCcEEEecCCCC-CCCCC
Q 043839          144 NFCKKFKHLRVLNLGSAV-LDL--YPPGLENLFHLKYLKLIT-------------PLLKLMQKLMHLNFGSITM-PSPPN  206 (415)
Q Consensus       144 ~~~~~~~~L~~L~l~~~~-~~~--lp~~i~~l~~L~~L~l~~-------------~~i~~l~~L~~L~l~~~~~-~~~~p  206 (415)
                      .....+++|+.|.+.++. +..  +-.....+++|+.|++++             .....+.+|+.|+++++.. ....-
T Consensus       182 ~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l  261 (482)
T KOG1947|consen  182 RLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL  261 (482)
T ss_pred             HHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence            334456777777777765 332  223344566666666652             2223456667777764442 22222


Q ss_pred             Cccc-CccccceeccccCC----CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccc
Q 043839          207 NYSS-SLKDLIFISAVHPS----SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMI  281 (415)
Q Consensus       207 ~~i~-~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Ll  281 (415)
                      ..+. .+++|++|.+..|.    ..+.....++++|++|+++++.......+......+++|+.|.+..           
T Consensus       262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~-----------  330 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS-----------  330 (482)
T ss_pred             HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh-----------
Confidence            2222 26677777755554    2333334567777777777774221223334444556666554433           


Q ss_pred             cCCCCCCCCceEEEEEccccCC---CCchhhcCCCCCCeEeeccCCCCCccc-EEEeccCCCc-cceEEcCCCccCccEE
Q 043839          282 LSEYKFPPTLTQLSLSNTKLME---DPMPTLEKLPLLEVLKLKQNSSFPLLK-ILHLKSMLWL-EEWTMGAGSMPKLESL  356 (415)
Q Consensus       282 p~~~~lp~~L~~L~l~~~~l~~---~~~~~l~~l~~L~~L~l~~~~~~~~L~-~L~l~~~~~l-~~l~~~~~~l~~L~~L  356 (415)
                        ...+ +.++.+.+.++.-..   ........+++++.+.+...+ ..... .+.+.+|+.+ ..+.........++.|
T Consensus       331 --~~~c-~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L  406 (482)
T KOG1947|consen  331 --LNGC-PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVL  406 (482)
T ss_pred             --cCCC-ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceE
Confidence              0112 334444444432211   111233455555555554322 12222 3445555555 2222223333336667


Q ss_pred             EEecCcccCCCh-hhhcC-CCCCCeEEEecCChh
Q 043839          357 ILNPCAYLRKLP-EELWC-IKNLCKLELHWPQPH  388 (415)
Q Consensus       357 ~l~~c~~~~~lp-~~l~~-l~~L~~L~l~~c~~~  388 (415)
                      +++.|.....-- ..... +..+..+++.+|+..
T Consensus       407 ~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  407 NLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             ecccCccccccchHHHhhhhhccccCCccCcccc
Confidence            776666443111 11111 556666666666643

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.54  E-value=1.4e-05  Score=78.38  Aligned_cols=207  Identities=24%  Similarity=0.221  Sum_probs=112.9

Q ss_pred             hccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceec
Q 043839          146 CKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFIS  219 (415)
Q Consensus       146 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~  219 (415)
                      +..+++|..|++.++.+..+...+..+++|++|++++      ..+..++.|+.|++.+|.+ ..+ .++..+++|+.++
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i-~~~-~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLI-SDI-SGLESLKSLKLLD  168 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcc-hhc-cCCccchhhhccc
Confidence            5667777777777777776655466677777777777      4555566677777774433 222 2345577777777


Q ss_pred             cccCC-CCCccc-cCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCC--ceEEE
Q 043839          220 AVHPS-SCTPDI-LGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPT--LTQLS  295 (415)
Q Consensus       220 l~~~~-~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~--L~~L~  295 (415)
                      +.++. ..+... ...+.+++.+++.++.  ...  ...+..+..+..+++.. +.+-.    +-.+..+ ..  |+.++
T Consensus       169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~--i~~--i~~~~~~~~l~~~~l~~-n~i~~----~~~l~~~-~~~~L~~l~  238 (414)
T KOG0531|consen  169 LSYNRIVDIENDELSELISLEELDLGGNS--IRE--IEGLDLLKKLVLLSLLD-NKISK----LEGLNEL-VMLHLRELY  238 (414)
T ss_pred             CCcchhhhhhhhhhhhccchHHHhccCCc--hhc--ccchHHHHHHHHhhccc-cccee----ccCcccc-hhHHHHHHh
Confidence            77777 333332 4667777777777763  111  11111222222222222 21000    0011222 22  78888


Q ss_pred             EEccccCCCCchhhcCCCCCCeEeecc--------CCCCCcccEEEeccCCCccc---eEE-cCCCccCccEEEEecCcc
Q 043839          296 LSNTKLMEDPMPTLEKLPLLEVLKLKQ--------NSSFPLLKILHLKSMLWLEE---WTM-GAGSMPKLESLILNPCAY  363 (415)
Q Consensus       296 l~~~~l~~~~~~~l~~l~~L~~L~l~~--------~~~~~~L~~L~l~~~~~l~~---l~~-~~~~l~~L~~L~l~~c~~  363 (415)
                      +.++.+. ..+..+..++.+..|++..        ....+.+..+....+.....   ... .....+.++...+..++.
T Consensus       239 l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (414)
T KOG0531|consen  239 LSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI  317 (414)
T ss_pred             cccCccc-cccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence            8888763 3335566677777777765        22334455555555532211   111 155677788888877775


Q ss_pred             cC
Q 043839          364 LR  365 (415)
Q Consensus       364 ~~  365 (415)
                      -.
T Consensus       318 ~~  319 (414)
T KOG0531|consen  318 RK  319 (414)
T ss_pred             cc
Confidence            54

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.54  E-value=0.00037  Score=66.79  Aligned_cols=73  Identities=16%  Similarity=0.215  Sum_probs=42.4

Q ss_pred             hccCCcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-
Q 043839          146 CKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-  224 (415)
Q Consensus       146 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-  224 (415)
                      +..+++++.|++++|.++.+|    .++               .+|++|.+++|.....+|..+.  .+|++|.+.+|. 
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP----~LP---------------~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~  106 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP----VLP---------------NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPE  106 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC----CCC---------------CCCcEEEccCCCCcccCCchhh--hhhhheEccCccc
Confidence            556778888888887666665    222               2345555553444455555442  467777777763 


Q ss_pred             -CCCccccCCCCCCCeEEEecc
Q 043839          225 -SCTPDILGRLPNVQTLRISGD  245 (415)
Q Consensus       225 -~~~~~~l~~l~~L~~L~l~~~  245 (415)
                       ..+|.      +|+.|++..+
T Consensus       107 L~sLP~------sLe~L~L~~n  122 (426)
T PRK15386        107 ISGLPE------SVRSLEIKGS  122 (426)
T ss_pred             cccccc------ccceEEeCCC
Confidence             43443      3556666544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.46  E-value=1.2e-06  Score=86.97  Aligned_cols=94  Identities=28%  Similarity=0.325  Sum_probs=58.1

Q ss_pred             CCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEE
Q 043839          289 PTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLIL  358 (415)
Q Consensus       289 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l  358 (415)
                      +.++.|+|+.|+++..  ..+..|+.|+.|+|+.          ..++ .|+.|.+++| .++++ ..+.++.+|+.|++
T Consensus       187 ~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL-~gie~LksL~~LDl  261 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTL-RGIENLKSLYGLDL  261 (1096)
T ss_pred             HHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhh-hhHHhhhhhhccch
Confidence            6666666666665432  2556666666666665          1122 3777777777 45554 24567888888888


Q ss_pred             ecCcccCC-ChhhhcCCCCCCeEEEecCCh
Q 043839          359 NPCAYLRK-LPEELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       359 ~~c~~~~~-lp~~l~~l~~L~~L~l~~c~~  387 (415)
                      ++|-..+. =-.-++.+..|+.|++.|+|-
T Consensus       262 syNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            88765541 112355677788888887664

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.43  E-value=0.00056  Score=65.55  Aligned_cols=131  Identities=18%  Similarity=0.221  Sum_probs=70.9

Q ss_pred             cCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchh
Q 043839          231 LGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPT  308 (415)
Q Consensus       231 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~  308 (415)
                      +..+.+++.|++++|   ....+|   .-..+|+.|.++.+.      ++  +|  ..+|++|++|++++|.....+|  
T Consensus        48 ~~~~~~l~~L~Is~c---~L~sLP---~LP~sLtsL~Lsnc~------nLtsLP--~~LP~nLe~L~Ls~Cs~L~sLP--  111 (426)
T PRK15386         48 IEEARASGRLYIKDC---DIESLP---VLPNELTEITIENCN------NLTTLP--GSIPEGLEKLTVCHCPEISGLP--  111 (426)
T ss_pred             HHHhcCCCEEEeCCC---CCcccC---CCCCCCcEEEccCCC------CcccCC--chhhhhhhheEccCcccccccc--
Confidence            455789999999988   455555   123469999998733      22  33  2245789999999883223344  


Q ss_pred             hcCCCCCCeEeecc-----CCCC-CcccEEEeccCCCccceEEcCCCc-cCccEEEEecCcccCCChhhhcCCCCCCeEE
Q 043839          309 LEKLPLLEVLKLKQ-----NSSF-PLLKILHLKSMLWLEEWTMGAGSM-PKLESLILNPCAYLRKLPEELWCIKNLCKLE  381 (415)
Q Consensus       309 l~~l~~L~~L~l~~-----~~~~-~~L~~L~l~~~~~l~~l~~~~~~l-~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~  381 (415)
                          ++|+.|++.+     ...+ ++|+.|.+.++......... ..+ ++|++|.+.+|... .+|..+.  .+|+.|.
T Consensus       112 ----~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~  183 (426)
T PRK15386        112 ----ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT  183 (426)
T ss_pred             ----cccceEEeCCCCCcccccCcchHhheeccccccccccccc-cccCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence                3455555543     1222 35666666433211111000 112 46777777776654 2343332  4566666


Q ss_pred             EecC
Q 043839          382 LHWP  385 (415)
Q Consensus       382 l~~c  385 (415)
                      ++.+
T Consensus       184 ls~n  187 (426)
T PRK15386        184 LHIE  187 (426)
T ss_pred             eccc
Confidence            5543

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=97.32  E-value=5.5e-05  Score=70.36  Aligned_cols=44  Identities=23%  Similarity=0.471  Sum_probs=36.8

Q ss_pred             hhcccCCCccchHHHHhhcccCCCCceechhhHHH-hhcCCCeee
Q 043839           14 QIYSVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQ-LINPSRLHS   57 (415)
Q Consensus        14 ~~lSY~~L~~~lk~cfl~~~~fp~~~~i~~~~Li~-L~~~~li~~   57 (415)
                      +.+||+.||++.|+||+|||+||+++.|+++.++. ++..++++.
T Consensus       240 l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~  284 (287)
T PF00931_consen  240 LELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS  284 (287)
T ss_dssp             HHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred             ceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence            35999999999999999999999999999999999 566666653

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.28  E-value=5.3e-06  Score=82.65  Aligned_cols=158  Identities=24%  Similarity=0.203  Sum_probs=78.4

Q ss_pred             HHHhccCCcccEEEcCCcccccCcccccCcc-CCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccc
Q 043839          143 ENFCKKFKHLRVLNLGSAVLDLYPPGLENLF-HLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAV  221 (415)
Q Consensus       143 ~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~  221 (415)
                      +..+..++.||+|.+.+|.+... ..+..+. .|+.|.-..    ++..|+++--+ |  ++.+-.++ ....|.+.+.+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~----Sl~Al~~v~as-c--ggd~~ns~-~Wn~L~~a~fs  172 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHN----SLDALRHVFAS-C--GGDISNSP-VWNKLATASFS  172 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhc----cHHHHHHHHHH-h--ccccccch-hhhhHhhhhcc
Confidence            44566778888888888877642 1222222 233332221    11112221111 1  01111100 01123444444


Q ss_pred             cCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEc
Q 043839          222 HPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSN  298 (415)
Q Consensus       222 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~  298 (415)
                      ++. ..+-..+.-++.|+.|+++.|  .....  ..+..+++|++|++++ |      .|  +|.++.-...|..|.+++
T Consensus       173 yN~L~~mD~SLqll~ale~LnLshN--k~~~v--~~Lr~l~~LkhLDlsy-N------~L~~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  173 YNRLVLMDESLQLLPALESLNLSHN--KFTKV--DNLRRLPKLKHLDLSY-N------CLRHVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             hhhHHhHHHHHHHHHHhhhhccchh--hhhhh--HHHHhccccccccccc-c------hhccccccchhhhhheeeeecc
Confidence            444 445555666777777777777  23322  2667777777777777 5      44  552221113477777777


Q ss_pred             cccCCCCchhhcCCCCCCeEeecc
Q 043839          299 TKLMEDPMPTLEKLPLLEVLKLKQ  322 (415)
Q Consensus       299 ~~l~~~~~~~l~~l~~L~~L~l~~  322 (415)
                      |.++  ....+.++.+|+.|+++.
T Consensus       242 N~l~--tL~gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  242 NALT--TLRGIENLKSLYGLDLSY  263 (1096)
T ss_pred             cHHH--hhhhHHhhhhhhccchhH
Confidence            7653  234455566666666654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.26  E-value=4.1e-05  Score=75.22  Aligned_cols=226  Identities=23%  Similarity=0.187  Sum_probs=130.1

Q ss_pred             ccCCcccEEEcCCcccccCcccccCccCCceEecCc------cc-ccccccCcEEEecCCCCCCCCCCcccCccccceec
Q 043839          147 KKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PL-LKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFIS  219 (415)
Q Consensus       147 ~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~  219 (415)
                      ..+..+..+.+..+.+...-..++.+++|.+|++.+      .. +..+++|++|++++|.+ ..+ .++..++.|+.|+
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I-~~i-~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI-TKL-EGLSTLTLLKELN  146 (414)
T ss_pred             HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccc-ccc-cchhhccchhhhe
Confidence            455667777788888776555678889999999988      44 67789999999995554 333 2366777799999


Q ss_pred             cccCCCCCccccCCCCCCCeEEEecccCcchhcHHHh-hhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEc
Q 043839          220 AVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKS-LCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSN  298 (415)
Q Consensus       220 l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~  298 (415)
                      +.++.-.-...+..+++|+.++++++.   ...+... +..+.+++.+.+.. +.+-+    +.++..+ ..+..+++..
T Consensus       147 l~~N~i~~~~~~~~l~~L~~l~l~~n~---i~~ie~~~~~~~~~l~~l~l~~-n~i~~----i~~~~~~-~~l~~~~l~~  217 (414)
T KOG0531|consen  147 LSGNLISDISGLESLKSLKLLDLSYNR---IVDIENDELSELISLEELDLGG-NSIRE----IEGLDLL-KKLVLLSLLD  217 (414)
T ss_pred             eccCcchhccCCccchhhhcccCCcch---hhhhhhhhhhhccchHHHhccC-Cchhc----ccchHHH-HHHHHhhccc
Confidence            999884445556668999999999883   2222221 56777888887777 42100    1133334 4455556666


Q ss_pred             cccCCCCchhhcCCCC--CCeEeecc---------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccC--
Q 043839          299 TKLMEDPMPTLEKLPL--LEVLKLKQ---------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLR--  365 (415)
Q Consensus       299 ~~l~~~~~~~l~~l~~--L~~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~--  365 (415)
                      +.++..  ..+..+..  |+.+++.+         ...+..+..|++.++ .+... ..+...+.+..+....++...  
T Consensus       218 n~i~~~--~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  293 (414)
T KOG0531|consen  218 NKISKL--EGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSN-RISNL-EGLERLPKLSELWLNDNKLALSE  293 (414)
T ss_pred             ccceec--cCcccchhHHHHHHhcccCccccccccccccccccccchhhc-ccccc-ccccccchHHHhccCcchhcchh
Confidence            655321  11112222  55555554         123445555555544 22211 123344445555555554331  


Q ss_pred             -CChh-hhcCCCCCCeEEEecCCh
Q 043839          366 -KLPE-ELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       366 -~lp~-~l~~l~~L~~L~l~~c~~  387 (415)
                       .... .....+.+..+.+...|.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~  317 (414)
T KOG0531|consen  294 AISQEYITSAAPTLVTLTLELNPI  317 (414)
T ss_pred             hhhccccccccccccccccccCcc
Confidence             1111 134455666666665554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.25  E-value=0.00021  Score=45.75  Aligned_cols=36  Identities=22%  Similarity=0.251  Sum_probs=20.1

Q ss_pred             cccEEEeccCCCccceEEcCCCccCccEEEEecCccc
Q 043839          328 LLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYL  364 (415)
Q Consensus       328 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~  364 (415)
                      +|++|++++| .++++|..++.|++|+.|++++|+..
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCC
Confidence            4556666665 55555555566666666666666543

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.92  E-value=0.00028  Score=62.83  Aligned_cols=175  Identities=18%  Similarity=0.186  Sum_probs=96.7

Q ss_pred             HhccCCcccEEEcCCcccc-cCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCc-c-------------
Q 043839          145 FCKKFKHLRVLNLGSAVLD-LYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNY-S-------------  209 (415)
Q Consensus       145 ~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~-i-------------  209 (415)
                      .+-+|++|+..+|+.|-+. ..|..++            +.|++-+.|++|.++ |+..+++..+ |             
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~------------d~is~~t~l~HL~l~-NnGlGp~aG~rigkal~~la~nKKa  153 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELG------------DLISSSTDLVHLKLN-NNGLGPIAGGRIGKALFHLAYNKKA  153 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHH------------HHHhcCCCceeEEee-cCCCCccchhHHHHHHHHHHHHhhh
Confidence            3445555555555555544 3333322            456677788888888 5544433221 2             


Q ss_pred             cCccccceeccccCC-CCCcc-----ccCCCCCCCeEEEecccCcchhc-----HHHhhhccCCCcEEEeecCccc--cc
Q 043839          210 SSLKDLIFISAVHPS-SCTPD-----ILGRLPNVQTLRISGDLSYHHSG-----VSKSLCELHKLECLKLVNEGKM--WQ  276 (415)
Q Consensus       210 ~~l~~L~~L~l~~~~-~~~~~-----~l~~l~~L~~L~l~~~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~i--l~  276 (415)
                      .+-+.|++.....+. ...+.     .+..-.+|+++.+..|.  ....     ....+..+++|+.|++.. |.+  ..
T Consensus       154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg--Irpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~g  230 (388)
T COG5238         154 ADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG--IRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEG  230 (388)
T ss_pred             ccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC--cCcchhHHHHHHHHHHhCcceeeeccc-cchhhhh
Confidence            245667776665555 22222     23444678888888773  2211     223455678888888887 422  00


Q ss_pred             cccccc-CCCCCCCCceEEEEEccccCCCCchhh----c--CCCCCCeEeecc-----------------CCCCCcccEE
Q 043839          277 FSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTL----E--KLPLLEVLKLKQ-----------------NSSFPLLKIL  332 (415)
Q Consensus       277 ~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l----~--~l~~L~~L~l~~-----------------~~~~~~L~~L  332 (415)
                      +.. +. .+... +.|+.|.+..|-+.......+    .  ..|+|..|....                 .+..|-|..|
T Consensus       231 S~~-La~al~~W-~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~l  308 (388)
T COG5238         231 SRY-LADALCEW-NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDL  308 (388)
T ss_pred             HHH-HHHHhccc-chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHH
Confidence            000 11 12233 668888888886654333221    1  357777777665                 4556778888


Q ss_pred             EeccC
Q 043839          333 HLKSM  337 (415)
Q Consensus       333 ~l~~~  337 (415)
                      .+.+|
T Consensus       309 e~ngN  313 (388)
T COG5238         309 ERNGN  313 (388)
T ss_pred             HHccC
Confidence            87777

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.36  E-value=0.00036  Score=69.72  Aligned_cols=101  Identities=30%  Similarity=0.271  Sum_probs=45.4

Q ss_pred             CCceEEEEEccccCC-C-CchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCcc---ceEEcCCCccCccEEEEecCc-
Q 043839          289 PTLTQLSLSNTKLME-D-PMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLE---EWTMGAGSMPKLESLILNPCA-  362 (415)
Q Consensus       289 ~~L~~L~l~~~~l~~-~-~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~---~l~~~~~~l~~L~~L~l~~c~-  362 (415)
                      ++|++|++++|.... . ......++++|+.|.+.....++.++.+.+..+....   ........+++++.+.+..|. 
T Consensus       295 ~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~  374 (482)
T KOG1947|consen  295 PSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI  374 (482)
T ss_pred             CcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence            556666666664321 1 2223334666665555432234444444444443221   111223444555554444444 


Q ss_pred             -------------cc-CCChhhhcCCCCCCeEEEecCChhh
Q 043839          363 -------------YL-RKLPEELWCIKNLCKLELHWPQPHY  389 (415)
Q Consensus       363 -------------~~-~~lp~~l~~l~~L~~L~l~~c~~~~  389 (415)
                                   .+ ..+.........++.|++..|....
T Consensus       375 ~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t  415 (482)
T KOG1947|consen  375 SDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVT  415 (482)
T ss_pred             cCcchHHHhcCCcccchHHHHHhccCCccceEecccCcccc
Confidence                         33 1112112222236888888887543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.21  E-value=0.0002  Score=57.17  Aligned_cols=83  Identities=23%  Similarity=0.156  Sum_probs=60.3

Q ss_pred             CCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCccc
Q 043839          285 YKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYL  364 (415)
Q Consensus       285 ~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~  364 (415)
                      ... ..|+..+|++|.+. ..|+.+.             ..||.++.|++++| .+.++|.++..+|.|+.|+++.|+..
T Consensus        50 ~~~-~el~~i~ls~N~fk-~fp~kft-------------~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   50 SKG-YELTKISLSDNGFK-KFPKKFT-------------IKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             hCC-ceEEEEecccchhh-hCCHHHh-------------hccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccc
Confidence            344 66777788888764 3344332             34666777777887 88899999999999999999999876


Q ss_pred             CCChhhhcCCCCCCeEEEec
Q 043839          365 RKLPEELWCIKNLCKLELHW  384 (415)
Q Consensus       365 ~~lp~~l~~l~~L~~L~l~~  384 (415)
                       ..|..+..+.++..|+..+
T Consensus       114 -~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen  114 -AEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             -cchHHHHHHHhHHHhcCCC
Confidence             4676666676776666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.97  E-value=0.015  Score=49.86  Aligned_cols=89  Identities=25%  Similarity=0.190  Sum_probs=52.8

Q ss_pred             CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceE--EcCCCccCccEEEEec
Q 043839          283 SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWT--MGAGSMPKLESLILNP  360 (415)
Q Consensus       283 ~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~  360 (415)
                      .+..+ +.|..|.+.+|.++...|..-.              .+|+|+.|.+.+| .+.++.  ..+..||+|++|.+-+
T Consensus        59 ~lp~l-~rL~tLll~nNrIt~I~p~L~~--------------~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   59 NLPHL-PRLHTLLLNNNRITRIDPDLDT--------------FLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             cCCCc-cccceEEecCCcceeeccchhh--------------hccccceEEecCc-chhhhhhcchhccCCccceeeecC
Confidence            34456 7888888888887654333222              3445555555665 344332  2356777777777777


Q ss_pred             CcccCCCh---hhhcCCCCCCeEEEecCCh
Q 043839          361 CAYLRKLP---EELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       361 c~~~~~lp---~~l~~l~~L~~L~l~~c~~  387 (415)
                      |+....--   -.+..+|+|+.||......
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehhhhhH
Confidence            77543110   2355677777777776554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.95  E-value=0.0097  Score=50.95  Aligned_cols=11  Identities=27%  Similarity=0.618  Sum_probs=6.1

Q ss_pred             CCceEEEEEcc
Q 043839          289 PTLTQLSLSNT  299 (415)
Q Consensus       289 ~~L~~L~l~~~  299 (415)
                      |+|+.|+..+-
T Consensus       140 p~l~~LDF~kV  150 (233)
T KOG1644|consen  140 PSLRTLDFQKV  150 (233)
T ss_pred             CcceEeehhhh
Confidence            55666655544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.81  E-value=0.0008  Score=60.18  Aligned_cols=55  Identities=22%  Similarity=0.210  Sum_probs=40.9

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT  182 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~  182 (415)
                      ..+++.|..+++...+      ..+..+|+.|.||.|+-|.|+++- .+..|++|+.|.|+.
T Consensus        18 l~~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk   72 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK   72 (388)
T ss_pred             HHHhhhhcccCCCccH------HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHh
Confidence            4567778888887743      356889999999999999988654 356677777777665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.65  E-value=0.0054  Score=32.64  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=15.7

Q ss_pred             cccEEEcCCcccccCcccccC
Q 043839          151 HLRVLNLGSAVLDLYPPGLEN  171 (415)
Q Consensus       151 ~L~~L~l~~~~~~~lp~~i~~  171 (415)
                      +|++|++++|.++.+|..+++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            478888888888777776554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.55  E-value=0.00058  Score=61.06  Aligned_cols=75  Identities=19%  Similarity=0.105  Sum_probs=46.3

Q ss_pred             CCCcccEEEeccCCCccceE--EcCCCccCccEEEEecCcccCCChh-----hhcCCCCCCeEEEecCChh-hHhhcccC
Q 043839          325 SFPLLKILHLKSMLWLEEWT--MGAGSMPKLESLILNPCAYLRKLPE-----ELWCIKNLCKLELHWPQPH-YRCNRKSR  396 (415)
Q Consensus       325 ~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~~~~lp~-----~l~~l~~L~~L~l~~c~~~-~~~~~~~~  396 (415)
                      .|.+|++|+|..| .+.++.  .-+.++|+|+.|.|..||-.+.-+.     .+.-+|+|+.||=....++ +.+.++.+
T Consensus        61 rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr~g  139 (388)
T KOG2123|consen   61 RCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALRDG  139 (388)
T ss_pred             HHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHHhcC
Confidence            3455666666666 344443  2357899999999999997765543     3566888888876554443 33334444


Q ss_pred             Cccc
Q 043839          397 GLQT  400 (415)
Q Consensus       397 ~~~~  400 (415)
                      +.|.
T Consensus       140 ~~PE  143 (388)
T KOG2123|consen  140 IYPE  143 (388)
T ss_pred             CCCc
Confidence            4444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.19  E-value=0.0093  Score=53.03  Aligned_cols=59  Identities=14%  Similarity=0.122  Sum_probs=27.3

Q ss_pred             cccCcEEEecCC--CCCCCCCCcccCccccceeccccCCCCCccc---cCCCCCCCeEEEeccc
Q 043839          188 MQKLMHLNFGSI--TMPSPPNNYSSSLKDLIFISAVHPSSCTPDI---LGRLPNVQTLRISGDL  246 (415)
Q Consensus       188 l~~L~~L~l~~~--~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~  246 (415)
                      |++|+.|.++.|  .....++.....+++|++|+++++....++.   +..+.+|..|++.+|.
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence            344455555434  2233333334444666666666655222222   3344555555555553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.12  E-value=0.011  Score=52.62  Aligned_cols=60  Identities=27%  Similarity=0.168  Sum_probs=29.2

Q ss_pred             CcccEEEeccC--CCccceEEcCCCccCccEEEEecCccc--CCChhhhcCCCCCCeEEEecCCh
Q 043839          327 PLLKILHLKSM--LWLEEWTMGAGSMPKLESLILNPCAYL--RKLPEELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       327 ~~L~~L~l~~~--~~l~~l~~~~~~l~~L~~L~l~~c~~~--~~lp~~l~~l~~L~~L~l~~c~~  387 (415)
                      |+|++|.++.|  ....+++.-...+|+|++|++++|...  .+++ .+..+++|..|++..|+.
T Consensus        65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSV  128 (260)
T ss_pred             chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCc
Confidence            45555555555  333344444444566666666655532  1222 234455555555555553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.12  E-value=0.0046  Score=49.59  Aligned_cols=58  Identities=21%  Similarity=0.144  Sum_probs=40.6

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT  182 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~  182 (415)
                      ..++.+..+.++..    .++++.+-.+++.++.|++++|.+.++|..+..++.||.|+++.
T Consensus        52 ~~el~~i~ls~N~f----k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~  109 (177)
T KOG4579|consen   52 GYELTKISLSDNGF----KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF  109 (177)
T ss_pred             CceEEEEecccchh----hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence            44566666666666    55666667777788888888888888887776666666666654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.66  E-value=0.0044  Score=52.96  Aligned_cols=83  Identities=24%  Similarity=0.396  Sum_probs=48.6

Q ss_pred             CceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEc--CCCccCccEEEEecCcccCCC
Q 043839          290 TLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMG--AGSMPKLESLILNPCAYLRKL  367 (415)
Q Consensus       290 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~--~~~l~~L~~L~l~~c~~~~~l  367 (415)
                      .++.++-+++.+......-+.+++              +++.|.+.+|..++.|.-+  -+..++|+.|+|++|+...+-
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~--------------~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~  167 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLR--------------SIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG  167 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccc--------------hhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence            467777777766544444444444              4455555666666644311  235667777777777755422


Q ss_pred             -hhhhcCCCCCCeEEEecCC
Q 043839          368 -PEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       368 -p~~l~~l~~L~~L~l~~c~  386 (415)
                       -..+.++++|+.|.+.+-|
T Consensus       168 GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  168 GLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             HHHHHHHhhhhHHHHhcCch
Confidence             2456667777777777655

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.82  E-value=0.035  Score=27.40  Aligned_cols=17  Identities=35%  Similarity=0.550  Sum_probs=8.9

Q ss_pred             CcccEEEcCCcccccCc
Q 043839          150 KHLRVLNLGSAVLDLYP  166 (415)
Q Consensus       150 ~~L~~L~l~~~~~~~lp  166 (415)
                      ++|++|++++|.++.+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            35777777777766554

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.97  E-value=0.043  Score=29.09  Aligned_cols=20  Identities=25%  Similarity=0.272  Sum_probs=10.4

Q ss_pred             CccEEEEecCcccCCChhhhc
Q 043839          352 KLESLILNPCAYLRKLPEELW  372 (415)
Q Consensus       352 ~L~~L~l~~c~~~~~lp~~l~  372 (415)
                      +|++|++++|... .+|.+++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            3555666666443 5555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.74  E-value=0.21  Score=39.84  Aligned_cols=13  Identities=8%  Similarity=0.143  Sum_probs=5.0

Q ss_pred             hccCCcccEEEcC
Q 043839          146 CKKFKHLRVLNLG  158 (415)
Q Consensus       146 ~~~~~~L~~L~l~  158 (415)
                      |.++++|+.+.+.
T Consensus         8 F~~~~~l~~i~~~   20 (129)
T PF13306_consen    8 FYNCSNLESITFP   20 (129)
T ss_dssp             TTT-TT--EEEET
T ss_pred             HhCCCCCCEEEEC
Confidence            4445555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.40  E-value=0.59  Score=37.16  Aligned_cols=13  Identities=8%  Similarity=0.171  Sum_probs=4.3

Q ss_pred             CCCccCccEEEEec
Q 043839          347 AGSMPKLESLILNP  360 (415)
Q Consensus       347 ~~~l~~L~~L~l~~  360 (415)
                      +..+ +|+.+.+..
T Consensus       100 f~~~-~l~~i~~~~  112 (129)
T PF13306_consen  100 FSNC-NLKEINIPS  112 (129)
T ss_dssp             TTT--T--EEE-TT
T ss_pred             hcCC-CceEEEECC
Confidence            3344 555555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.10  E-value=0.036  Score=47.51  Aligned_cols=69  Identities=22%  Similarity=0.236  Sum_probs=49.7

Q ss_pred             CCCCCCCCceEEEEEccccCCC-CchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceE-EcCCCccCccEEEEec
Q 043839          283 SEYKFPPTLTQLSLSNTKLMED-PMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWT-MGAGSMPKLESLILNP  360 (415)
Q Consensus       283 ~~~~lp~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~  360 (415)
                      .+..+ +.++.|.+.+|.-.++ ..+.++             +.+++|+.|+|++|+.+++-- ..+..+++|+.|.+.+
T Consensus       120 ~L~~l-~~i~~l~l~~ck~~dD~~L~~l~-------------~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  120 HLRDL-RSIKSLSLANCKYFDDWCLERLG-------------GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             HHhcc-chhhhheeccccchhhHHHHHhc-------------ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            45678 8888888888864332 222222             357899999999998888543 5578899999999987


Q ss_pred             CcccC
Q 043839          361 CAYLR  365 (415)
Q Consensus       361 c~~~~  365 (415)
                      -+...
T Consensus       186 l~~v~  190 (221)
T KOG3864|consen  186 LPYVA  190 (221)
T ss_pred             chhhh
Confidence            76543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.70  E-value=0.44  Score=26.21  Aligned_cols=22  Identities=36%  Similarity=0.579  Sum_probs=16.0

Q ss_pred             CCcccEEEcCCcccccCccccc
Q 043839          149 FKHLRVLNLGSAVLDLYPPGLE  170 (415)
Q Consensus       149 ~~~L~~L~l~~~~~~~lp~~i~  170 (415)
                      +++|++|+|++|.++.+|....
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3567888888888887776543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.70  E-value=0.44  Score=26.21  Aligned_cols=22  Identities=36%  Similarity=0.579  Sum_probs=16.0

Q ss_pred             CCcccEEEcCCcccccCccccc
Q 043839          149 FKHLRVLNLGSAVLDLYPPGLE  170 (415)
Q Consensus       149 ~~~L~~L~l~~~~~~~lp~~i~  170 (415)
                      +++|++|+|++|.++.+|....
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3567888888888887776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	415
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 47/252 (18%), Positives = 88/252 (34%), Gaps = 59/252 (23%)

Query: 148 KFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNN 207
                  L L S  L  +P     L HL+++ +                           
Sbjct: 79  TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTI--------------------------- 111

Query: 208 YSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISG-DLSYHHSGVSKSLCELHKLECL 266
            ++ L +L            PD + +   ++TL ++   L      +  S+  L++L  L
Sbjct: 112 DAAGLMEL------------PDTMQQFAGLETLTLARNPLR----ALPASIASLNRLREL 155

Query: 267 KLVNEGKMWQF-----SRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLK 321
            +    ++ +      S     E++    L  L L  T +   P  ++  L  L+ LK++
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIR 214

Query: 322 QNS--SFPL-------LKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELW 372
            +   +          L+ L L+    L  +    G    L+ LIL  C+ L  LP ++ 
Sbjct: 215 NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274

Query: 373 CIKNLCKLELHW 384
            +  L KL+L  
Sbjct: 275 RLTQLEKLDLRG 286

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 24/231 (10%)

Query: 123 YLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKL-- 180
            L       +  D+      + F     ++   +L S  ++         F  ++L+L  
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLF-NCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVN 313

Query: 181 ------ITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCTPDILGRL 234
                  T  LK +++L   +       S  +  S    DL     +    C        
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGT 372

Query: 235 PNVQTLRISGDLSY-HHSGVSKSLCELHKLECLKLVNEGKMWQFSRMI-LSEYKFPPTLT 292
            +++ L    DLS+     +S +   L +LE L   +        +M   S +     L 
Sbjct: 373 TSLKYL----DLSFNGVITMSSNFLGLEQLEHLDFQH----SNLKQMSEFSVFLSLRNLI 424

Query: 293 QLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNS---SFPLLKILHLKSMLWL 340
            L +S+T            L  LEVLK+  NS   +F       L+++ +L
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 42/275 (15%), Positives = 78/275 (28%), Gaps = 43/275 (15%)

Query: 136 HLAGIDCENFCKKFKHLRVLNLGSAVL--DLYPPGLENLFHLKYLKLITPLLKLMQKLMH 193
            +  I    F  K   L  L L +     ++    ++ L  L+  +L+    +    L  
Sbjct: 188 PMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 194 LNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGV 253
            +  ++         + ++++       +      D+   L NV +      L       
Sbjct: 246 FDKSALE-----GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF----SLVSVTIER 296

Query: 254 SKSLCELHKLECLKLVN-------EGKMWQFSRMILSEYKFP--------PTLTQLSLSN 298
            K        + L+LVN         K+    R+  +  K          P+L  L LS 
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 356

Query: 299 TKL--MEDPMPTLEKLPLLEVLKLKQN---------SSFPLLKILHLKSMLWLEEWTMGA 347
             L        +      L+ L L  N              L+ L  +     +      
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 348 -GSMPKLESLILNPCAYLRKLPEELWCIKNLCKLE 381
             S+  L  L ++   + R           L  LE
Sbjct: 417 FLSLRNLIYLDISHT-HTRVAFNG--IFNGLSSLE 448

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 44/270 (16%), Positives = 76/270 (28%), Gaps = 52/270 (19%)

Query: 148 KFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKL--------ITPLLKL--MQKLMHL--- 194
               L  L L ++ ++    G +    L  L L        +T L  L     L  L   
Sbjct: 75  SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134

Query: 195 -NFGSITMPSPPNNYSSSLKDLI----FISAVHPSSCTPDILGRLPNVQTLRISGDLSYH 249
            N              +SL+ L      IS  +       +      ++ L     +S +
Sbjct: 135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG--WVLSDGCGELKHL----AISGN 188

Query: 250 H-SGVSKSLCELHKLECLKLVN---EGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDP 305
             SG    +     LE L + +      +                L  L +S  KL    
Sbjct: 189 KISG-DVDVSRCVNLEFLDVSSNNFSTGIPFLGDC--------SALQHLDISGNKL-SGD 238

Query: 306 MP-TLEKLPLLEVLKLKQN--------SSFPLLKILHLKS-ML--WLEEWTMGAGSMPKL 353
               +     L++L +  N             L+ L L        + ++   +G+   L
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL--SGACDTL 296

Query: 354 ESLILNPCAYLRKLPEELWCIKNLCKLELH 383
             L L+   +   +P        L  L L 
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 35/249 (14%), Positives = 76/249 (30%), Gaps = 32/249 (12%)

Query: 148 KFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNN 207
           +   L+VL+ G+    +      +       +L   + +  +  + +++  + +      
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDE------ELTPDMSEERKHRIRMHYKKMFLDYDQRL 398

Query: 208 YSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLK 267
             S L                D    L + Q   ++  ++     +SK++  L KL+ + 
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT----FISKAIQRLTKLQIIY 454

Query: 268 LVN---------------EGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKL 312
             N                    +        +     LT + L N   M      L  L
Sbjct: 455 FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514

Query: 313 PLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELW 372
           P L+ L +  N     +    LK+            + PK++   +     L + P    
Sbjct: 515 PELQSLNIACNR---GISAAQLKA--DWTRLADDEDTGPKIQIFYMGYNN-LEEFPAS-A 567

Query: 373 CIKNLCKLE 381
            ++ + KL 
Sbjct: 568 SLQKMVKLG 576

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 31/255 (12%), Positives = 67/255 (26%), Gaps = 32/255 (12%)

Query: 145 FCKKFKHLRVLNLGS-AVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPS 203
                  +  L+L         P  +  L  LK L                   S T+  
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVL--------------SFGTHSETVSG 363

Query: 204 PPNNYSSSLKDLIFISAVH-PSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHK 262
                     D+                L     +    +  D    +  + K + +  +
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM-KPIKKDSR 422

Query: 263 LECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ 322
           +  LK    G +      I    +    L  +  +N+    D +    +    +  K  +
Sbjct: 423 IS-LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481

Query: 323 N-----SSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLIL---------NPCAYLRKLP 368
           N     S+   L  + L +   + +       +P+L+SL +            A   +L 
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541

Query: 369 EELWCIKNLCKLELH 383
           ++      +    + 
Sbjct: 542 DDEDTGPKIQIFYMG 556

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 42/266 (15%), Positives = 91/266 (34%), Gaps = 42/266 (15%)

Query: 147 KKFKHLRVLNLGSAVLDLYPPG-LENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPP 205
                L  L + +  L  Y    L+++  + +L L       + ++      S+      
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 206 NNYSSSLKDLIFISAVHPSS-----------------CTPDILGRLPNVQTLRISG---- 244
           +   +  +          S                      +L  +  +  +        
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264

Query: 245 DLSYHHSGVSKSLCELHKLECLKL----VNEGKMWQFSRMILSEYKFPPTLTQLSLSNTK 300
            L   +   S  + EL K+E + +    + +  ++     + S       + ++++ N+K
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL---EKVKRITVENSK 321

Query: 301 LMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLIL-- 358
           +   P    + L  LE L L +N    L+   +LK+           G+ P L++L+L  
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSEN----LMVEEYLKNSACK-------GAWPSLQTLVLSQ 370

Query: 359 NPCAYLRKLPEELWCIKNLCKLELHW 384
           N    ++K  E L  +KNL  L++  
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISR 396

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 35/226 (15%), Positives = 74/226 (32%), Gaps = 56/226 (24%)

Query: 136 HLAGIDCENFCKKFKHLRVLNLGSAVL-DLYPPGLENLFHLKYLKLITPLLKLMQKLMHL 194
           +L  +  ++F      L    L    +  L+   L  LF+++YL L     K       +
Sbjct: 259 NLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ-----SI 312

Query: 195 NFGSITMPSP-PNNYSSSLKDLI----FISAVHPSSCTPDILGRLPNVQTLRISG----- 244
           +  S+         +   L+ L      I  +  +         L N++ L +S      
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM-----FTGLINLKYLSLSNSFTSL 367

Query: 245 -------------------DLSY-HHSGV-SKSLCELHKLECL-----KLVNEGKMWQFS 278
                              +L+    S + S +   L  LE L     ++  E    ++ 
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427

Query: 279 RMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNS 324
            +          + ++ LS  K ++    +   +P L+ L L++ +
Sbjct: 428 GL--------ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 54/258 (20%), Positives = 91/258 (35%), Gaps = 33/258 (12%)

Query: 150 KHLRVLNLGSAVLDLYPPG-LENLFHLKYLKL----ITPL----LKLMQKLMHLNFGSIT 200
            +LR L L S  L L P G    L +L  L +    I  L     + +  L  L  G   
Sbjct: 80  FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139

Query: 201 MPSPPNNYSSSLKDL--IFISAVHPSSCTPDILGRLPNVQTLRISG-DLSYHHSGVSKSL 257
           +    +   S L  L  + +   + +S   + L  L  +  LR+   +++        S 
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY---SF 196

Query: 258 CELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEV 317
             L++L+ L++ +    W +   +     +   LT LS+++  L   P   +  L  L  
Sbjct: 197 KRLYRLKVLEISH----WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252

Query: 318 LKLKQN----------SSFPLLKILHLKSMLWLEEWTMGA-GSMPKLESLILNPCAYLRK 366
           L L  N               L+ + L     L      A   +  L  L ++    L  
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQ-LTT 310

Query: 367 LPEEL-WCIKNLCKLELH 383
           L E +   + NL  L L 
Sbjct: 311 LEESVFHSVGNLETLILD 328

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 53/316 (16%), Positives = 94/316 (29%), Gaps = 36/316 (11%)

Query: 68  ACYVPSIVYTSLVLVADKTGFVRMPHMEKESLANVKRCFILKDLTEFFPLEHSDMYLQSF 127
              V S + T L++V +    V     +  +  +      L   +    L      +   
Sbjct: 264 PLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWT 323

Query: 128 LNHSSESDHLAGIDCENFCKKF---KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPL 184
            + S +   L     E +C+     + L    L      +    LE+   L+ L+     
Sbjct: 324 GSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKW 383

Query: 185 LKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFI-SAVHPSSCTPDILGRLPNVQTLRIS 243
             L   L+      +        Y S+LK +  + +A      +  +L            
Sbjct: 384 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV 443

Query: 244 GDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFS----RMILSEYKFPPTLTQLSLSNT 299
             L   H  ++  LC L +L  +  ++       S    R +         L  L  S+ 
Sbjct: 444 RVLHLAHKDLT-VLCHLEQLLLVTHLD------LSHNRLRALPPALAALRCLEVLQASDN 496

Query: 300 KLMEDPMPTLEKLPLLEVLKLKQN--SSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLI 357
            L    +  +  LP L+ L L  N       ++ L                S P+L  L 
Sbjct: 497 ALEN--VDGVANLPRLQELLLCNNRLQQSAAIQPL---------------VSCPRLVLLN 539

Query: 358 L--NPCAYLRKLPEEL 371
           L  N       + E L
Sbjct: 540 LQGNSLCQEEGIQERL 555

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 51/355 (14%), Positives = 93/355 (26%), Gaps = 90/355 (25%)

Query: 65  TIKA----CYVPSIVYTSLVLVADKTGFVRMPHMEKESLANVKRCFILKDLTEFFPLEHS 120
              A    C +  ++ T    V D        H              L   +     +  
Sbjct: 258 AWNAFNLSCKI--LLTTRFKQVTDFLSAATTTH------------ISLDHHSMTLTPDEV 303

Query: 121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKL 180
              L  +L+   +   L             + R L++ +  +       +N  H+   KL
Sbjct: 304 KSLLLKYLDCRPQD--LP----REVLTT--NPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 181 ITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDL-IFISAVHPSSCTPDILGRL----P 235
            T +   +  L             P  Y      L +F  + H       +L  +     
Sbjct: 356 TTIIESSLNVL------------EPAEYRKMFDRLSVFPPSAH---IPTILLSLIWFDVI 400

Query: 236 NVQTLRISGDLSYHHSGVSKSLCE---------LHKLECLKLVNEGKMWQFSRMILSEYK 286
               + +   L         SL E         +  +     V     +   R I+  Y 
Sbjct: 401 KSDVMVVVNKL------HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 287 FPPTLTQLSLSNTKLMED------------PMPTLEKLPLLEVLKLKQNSSFPLLKILHL 334
            P T     L       D             +   E++ L  ++ L  +  F   KI H 
Sbjct: 455 IPKTFDSDDLI--PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DFRFLEQKIRHD 510

Query: 335 KSMLWLEEWTMGAGSMPKLESL------ILNPCAYLRKLPEELWCIKNLCKLELH 383
            +      W      +  L+ L      I +      +L   +  +  L K+E +
Sbjct: 511 ST-----AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI--LDFLPKIEEN 558

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	415
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.9
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.89
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.88
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.87
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.85
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.85
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.83
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.8
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.79
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.75
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.75
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.74
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.74
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.74
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.73
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.71
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.71
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.7
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.69
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.69
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.68
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.67
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.66
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.64
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.63
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.63
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.61
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.61
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.6
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.59
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.59
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.59
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.57
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.55
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.55
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.54
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.53
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.52
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.52
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.5
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.48
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.47
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.4
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.38
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.38
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.35
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.35
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.34
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.33
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.33
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.32
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.32
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.3
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.29
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.28
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.27
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.27
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.27
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.27
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.22
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.19
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.12
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.02
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.01
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.01
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.99
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.97
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.97
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.95
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.94
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.91
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.9
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	98.77
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.73
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.72
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.71
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.68
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.66
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.51
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.5
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.49
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.48
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.46
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.41
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.3
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.23
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.14
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	98.09
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.05
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.93
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.87
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.83
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.77
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.54
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.3
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.15
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.66
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.52
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.51
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	88.99
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	86.7

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=3.4e-25  Score=218.68  Aligned_cols=273  Identities=16%  Similarity=0.113  Sum_probs=213.2

Q ss_pred             CCceeEEEEEeCCCCCcc-CCCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCccC
Q 043839           99 LANVKRCFILKDLTEFFP-LEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLFH  174 (415)
Q Consensus        99 ~~~~r~l~l~~~~~~~~~-~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~  174 (415)
                      +..++++.+. ++....+ +..+  +++|++|.+.++...   ..+.+..|.++++|++|++++|.++ ..|..++++++
T Consensus        29 ~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~n~~~---~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  104 (455)
T 3v47_A           29 PAHVNYVDLS-LNSIAELNETSFSRLQDLQFLKVEQQTPG---LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN  104 (455)
T ss_dssp             CTTCCEEECC-SSCCCEECTTTTSSCTTCCEEECCCCSTT---CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred             CCccCEEEec-CCccCcCChhHhccCccccEEECcCCccc---ceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence            4678899988 7766655 3444  899999999988763   2445677899999999999999988 55888999999


Q ss_pred             CceEecCc----------ccccccccCcEEEecCCCCCCCCCCc-ccCccccceeccccCC--CCCccccC---------
Q 043839          175 LKYLKLIT----------PLLKLMQKLMHLNFGSITMPSPPNNY-SSSLKDLIFISAVHPS--SCTPDILG---------  232 (415)
Q Consensus       175 L~~L~l~~----------~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~--~~~~~~l~---------  232 (415)
                      |++|++++          ..++++++|++|++++|.+....|.. ++.+++|++|++.++.  ...+..+.         
T Consensus       105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~  184 (455)
T 3v47_A          105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL  184 (455)
T ss_dssp             CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred             CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence            99999998          12778999999999977777766776 7899999999999887  33333332         


Q ss_pred             -------------------------CCCCCCeEEEecccCcchhcHHHhhhcc---C-----------------------
Q 043839          233 -------------------------RLPNVQTLRISGDLSYHHSGVSKSLCEL---H-----------------------  261 (415)
Q Consensus       233 -------------------------~l~~L~~L~l~~~~~~~~~~~~~~l~~l---~-----------------------  261 (415)
                                               .+++|++|++++|  ...+..+..+...   +                       
T Consensus       185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  262 (455)
T 3v47_A          185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN--GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK  262 (455)
T ss_dssp             EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS--CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred             cccccCcccccchhhccccccccccccceeeeEecCCC--cccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence                                     3467888888888  4556666655443   3                       


Q ss_pred             -------------CCcEEEeecCccccccccc---cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc--
Q 043839          262 -------------KLECLKLVNEGKMWQFSRM---IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ--  322 (415)
Q Consensus       262 -------------~L~~L~l~~~~~il~~l~L---lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~--  322 (415)
                                   +|+.|++++ +      ++   .| ++..+ ++|++|++++|.+.+..+..++.+++|+.|++++  
T Consensus       263 ~~~~~~~~~~~~~~L~~L~l~~-n------~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  334 (455)
T 3v47_A          263 DPDNFTFKGLEASGVKTCDLSK-S------KIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF  334 (455)
T ss_dssp             CCCTTTTGGGTTSCCCEEECCS-S------CCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cCcccccccccccCceEEEecC-c------cccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence                         444454444 2      22   45 78889 9999999999999877788899999999999997  


Q ss_pred             --------CCCCCcccEEEeccCCCccce-EEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          323 --------NSSFPLLKILHLKSMLWLEEW-TMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       323 --------~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                              ...+++|++|++++| .++.+ |..++.+++|++|++++|...+..+..+..+++|+.|++++++
T Consensus       335 l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          335 LGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence                    456789999999999 55655 6678999999999999998775334556889999999998754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=2e-25  Score=234.21  Aligned_cols=228  Identities=20%  Similarity=0.163  Sum_probs=146.6

Q ss_pred             CCcccEEEcCCcccc-cCcccccCccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceec
Q 043839          149 FKHLRVLNLGSAVLD-LYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFIS  219 (415)
Q Consensus       149 ~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~  219 (415)
                      +++|++|++++|.++ .+|..++++++|++|++++        ..++++++|++|++++|.+.+.+|..++.+++|++|+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            455666666666655 5666666666666666665        3455666666666665555556666666666666666


Q ss_pred             cccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc---cc-CCCCCCCCceE
Q 043839          220 AVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM---IL-SEYKFPPTLTQ  293 (415)
Q Consensus       220 l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L---lp-~~~~lp~~L~~  293 (415)
                      +.++.  +.+|..++.+++|+.|++++|  ...+.+|..++.+++|+.|++++ |      ++   +| .+..+ ++|+.
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N--~l~~~~p~~~~~l~~L~~L~L~~-N------~l~~~~p~~l~~l-~~L~~  542 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNN--RLTGEIPKWIGRLENLAILKLSN-N------SFSGNIPAELGDC-RSLIW  542 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSS--CCCSCCCGGGGGCTTCCEEECCS-S------CCEEECCGGGGGC-TTCCE
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCC--ccCCcCChHHhcCCCCCEEECCC-C------cccCcCCHHHcCC-CCCCE
Confidence            66666  455666666666666666666  45555666666666666666666 4      22   55 66666 67777


Q ss_pred             EEEEccccCCCCchhh----------------------------------------------------------------
Q 043839          294 LSLSNTKLMEDPMPTL----------------------------------------------------------------  309 (415)
Q Consensus       294 L~l~~~~l~~~~~~~l----------------------------------------------------------------  309 (415)
                      |++++|.+.+.+|..+                                                                
T Consensus       543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g  622 (768)
T 3rgz_A          543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG  622 (768)
T ss_dssp             EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred             EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence            7777766654444332                                                                


Q ss_pred             ------cCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcC
Q 043839          310 ------EKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWC  373 (415)
Q Consensus       310 ------~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~  373 (415)
                            +.+++|+.|++++          .+.+++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..+..
T Consensus       623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~  702 (768)
T 3rgz_A          623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA  702 (768)
T ss_dssp             ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence                  2345566666665          344566777777777555577777777777777777777777777777777


Q ss_pred             CCCCCeEEEecCC
Q 043839          374 IKNLCKLELHWPQ  386 (415)
Q Consensus       374 l~~L~~L~l~~c~  386 (415)
                      +++|++|++++|+
T Consensus       703 l~~L~~L~ls~N~  715 (768)
T 3rgz_A          703 LTMLTEIDLSNNN  715 (768)
T ss_dssp             CCCCSEEECCSSE
T ss_pred             CCCCCEEECcCCc
Confidence            7777777777653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=3.2e-25  Score=232.75  Aligned_cols=253  Identities=22%  Similarity=0.185  Sum_probs=162.4

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCcc-CCceEecCc----------------
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLF-HLKYLKLIT----------------  182 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~-~L~~L~l~~----------------  182 (415)
                      +++|++|.+.++...   ..+....+.++++|++|++++|.++ .+|..+.++. +|++|++++                
T Consensus       317 l~~L~~L~L~~n~l~---~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~  393 (768)
T 3rgz_A          317 CSLLESLALSSNNFS---GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK  393 (768)
T ss_dssp             CTTCCEEECCSSEEE---EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred             CCCccEEECCCCccc---CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence            455555555554431   1333344666777777777777666 6666666555 555555554                


Q ss_pred             ------------------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEE
Q 043839          183 ------------------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRI  242 (415)
Q Consensus       183 ------------------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l  242 (415)
                                        ..++++++|++|++++|.+.+.+|..++.+++|++|++.++.  +.+|..++.+++|+.|++
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL  473 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence                              123334444444444333333444444444444444444444  344444444455555555


Q ss_pred             ecccCcchhcHHHhhhccCCCcEEEeecCccccccccc---cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeE
Q 043839          243 SGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM---IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVL  318 (415)
Q Consensus       243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L---lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  318 (415)
                      ++|  ...+.+|..+..+++|+.|++++ +      ++   +| ++..+ ++|++|++++|.+.+.+|..++.+++|+.|
T Consensus       474 ~~N--~l~~~~p~~l~~l~~L~~L~L~~-N------~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  543 (768)
T 3rgz_A          474 DFN--DLTGEIPSGLSNCTNLNWISLSN-N------RLTGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWL  543 (768)
T ss_dssp             CSS--CCCSCCCGGGGGCTTCCEEECCS-S------CCCSCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred             cCC--cccCcCCHHHhcCCCCCEEEccC-C------ccCCcCChHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence            444  23334444555555555555554 3      22   67 78888 888888888888877888888888888888


Q ss_pred             eecc---C------------------------------------------------------------------------
Q 043839          319 KLKQ---N------------------------------------------------------------------------  323 (415)
Q Consensus       319 ~l~~---~------------------------------------------------------------------------  323 (415)
                      ++++   .                                                                        
T Consensus       544 ~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~  623 (768)
T 3rgz_A          544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH  623 (768)
T ss_dssp             ECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEE
T ss_pred             ECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceeccc
Confidence            8875   0                                                                        


Q ss_pred             -----CCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          324 -----SSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       324 -----~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                           ..+++|++|++++|...+.+|..++.+++|+.|++++|...+.+|..++.+++|+.|++++|.
T Consensus       624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~  691 (768)
T 3rgz_A          624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK  691 (768)
T ss_dssp             CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence                 013568889999996666889899999999999999999999999999999999999999864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=2.2e-24  Score=214.27  Aligned_cols=277  Identities=17%  Similarity=0.091  Sum_probs=215.8

Q ss_pred             CCCceeEEEEEeCCCCCccCC-CC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCccc-ccCcc
Q 043839           98 SLANVKRCFILKDLTEFFPLE-HS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPG-LENLF  173 (415)
Q Consensus        98 ~~~~~r~l~l~~~~~~~~~~~-~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~  173 (415)
                      .+..++.+.+. ++....+.. .+  +++|++|.+.++..    ..+.+..|.++++|++|++++|.++.+|.. +.+++
T Consensus        30 ~~~~l~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  104 (477)
T 2id5_A           30 IPTETRLLDLG-KNRIKTLNQDEFASFPHLEELELNENIV----SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS  104 (477)
T ss_dssp             CCTTCSEEECC-SSCCCEECTTTTTTCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred             CCCCCcEEECC-CCccceECHhHccCCCCCCEEECCCCcc----CEeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence            35567888888 766665533 33  88899999988876    455567788889999999999988877754 67888


Q ss_pred             CCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCc-cccCCCCCCCeEEEe
Q 043839          174 HLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTP-DILGRLPNVQTLRIS  243 (415)
Q Consensus       174 ~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~  243 (415)
                      +|++|++++        ..+.++++|++|++++|.+....|..++.+++|++|++.++. ..++ ..+..+++|+.|+++
T Consensus       105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  184 (477)
T 2id5_A          105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR  184 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred             CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence            999999887        456778889999998777666667778888999999998888 5444 457888999999998


Q ss_pred             cccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc
Q 043839          244 GDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ  322 (415)
Q Consensus       244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  322 (415)
                      ++  ......+..+..+++|+.|++++ +..+..   +| ..... .+|++|++++|.++...+..++.+++|+.|++++
T Consensus       185 ~n--~i~~~~~~~~~~l~~L~~L~l~~-~~~~~~---~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  257 (477)
T 2id5_A          185 HL--NINAIRDYSFKRLYRLKVLEISH-WPYLDT---MTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY  257 (477)
T ss_dssp             SC--CCCEECTTCSCSCTTCCEEEEEC-CTTCCE---ECTTTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred             CC--cCcEeChhhcccCcccceeeCCC-Cccccc---cCcccccC-ccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence            88  34444455677888999999887 311110   45 55556 6999999999998766667899999999999997


Q ss_pred             ----------CCCCCcccEEEeccCCCccce-EEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839          323 ----------NSSFPLLKILHLKSMLWLEEW-TMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       323 ----------~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~  387 (415)
                                ...+++|++|++++| .++.+ |..+..+++|+.|++++|....-.+..+..+++|+.|+++++|-
T Consensus       258 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          258 NPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             SCCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             CcCCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence                      456789999999999 55555 56788999999999999987754445678899999999997663

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=7.7e-24  Score=201.48  Aligned_cols=265  Identities=18%  Similarity=0.197  Sum_probs=202.2

Q ss_pred             CCCceeEEEEEeCCCCCccCCCC-CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCc
Q 043839           98 SLANVKRCFILKDLTEFFPLEHS-DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLK  176 (415)
Q Consensus        98 ~~~~~r~l~l~~~~~~~~~~~~~-~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~  176 (415)
                      ....++++.+. +.....++... +++|++|.+.++...    .+.+  +..+++|++|++++|.++.+| .+.++++|+
T Consensus        42 ~l~~L~~L~l~-~~~i~~~~~~~~~~~L~~L~l~~n~i~----~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~  113 (347)
T 4fmz_A           42 ELESITKLVVA-GEKVASIQGIEYLTNLEYLNLNGNQIT----DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLR  113 (347)
T ss_dssp             HHTTCSEEECC-SSCCCCCTTGGGCTTCCEEECCSSCCC----CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCS
T ss_pred             hcccccEEEEe-CCccccchhhhhcCCccEEEccCCccc----cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCC
Confidence            35568888888 77766565544 999999999998773    3322  889999999999999988776 588999999


Q ss_pred             eEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcc
Q 043839          177 YLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYH  249 (415)
Q Consensus       177 ~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~  249 (415)
                      +|++++      +.+..+++|++|++++|.....++. +..+++|++|++.++. ...+. ++.+++|+.|++++|.  .
T Consensus       114 ~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~--l  189 (347)
T 4fmz_A          114 ELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ--I  189 (347)
T ss_dssp             EEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC--C
T ss_pred             EEECcCCcccCchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc--c
Confidence            999988      5577889999999996655555444 8899999999999988 44444 7889999999999883  2


Q ss_pred             hhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc-------
Q 043839          250 HSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ-------  322 (415)
Q Consensus       250 ~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-------  322 (415)
                       ..++. +..+++|+.+++++ +.+-.    ++.+..+ ++|++|++++|.+++.. . ++.+++|+.|++++       
T Consensus       190 -~~~~~-~~~l~~L~~L~l~~-n~l~~----~~~~~~~-~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~  259 (347)
T 4fmz_A          190 -EDISP-LASLTSLHYFTAYV-NQITD----ITPVANM-TRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISDIN  259 (347)
T ss_dssp             -CCCGG-GGGCTTCCEEECCS-SCCCC----CGGGGGC-TTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCG
T ss_pred             -ccccc-ccCCCccceeeccc-CCCCC----CchhhcC-CcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCCCh
Confidence             33333 77888999999887 31100    2235567 88888888888875433 2 77888888888877       


Q ss_pred             -CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          323 -NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       323 -~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                       ...+++|++|++++| .++.++ .+..+++|+.|++++|...+..|..+..+++|+.|++++|+
T Consensus       260 ~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          260 AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence             456778888888888 566653 46788888888888888776667778888888888888876

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=1.8e-24  Score=204.26  Aligned_cols=211  Identities=22%  Similarity=0.247  Sum_probs=138.0

Q ss_pred             cCCcccEEEcCCcccccCcccccCccCCceEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCccccceecc
Q 043839          148 KFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISA  220 (415)
Q Consensus       148 ~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l  220 (415)
                      ..+++++|+++++.++.+|..++++++|++|++++       ..++++++|++|++++|.+. .+|..++.+++|++|++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            34778888888888888887777777777666665       23445555555555534333 55555666666666666


Q ss_pred             ccCC--CCCccccCC---------CCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc-CCCC
Q 043839          221 VHPS--SCTPDILGR---------LPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL-SEYK  286 (415)
Q Consensus       221 ~~~~--~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp-~~~~  286 (415)
                      .+|.  +.+|..++.         +++|++|++++|  .. ..+|..+..+++|+.|++++ +      ++  +| .+..
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n--~l-~~lp~~l~~l~~L~~L~L~~-N------~l~~l~~~l~~  227 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT--GI-RSLPASIANLQNLKSLKIRN-S------PLSALGPAIHH  227 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE--CC-CCCCGGGGGCTTCCEEEEES-S------CCCCCCGGGGG
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCC--Cc-CcchHhhcCCCCCCEEEccC-C------CCCcCchhhcc
Confidence            5544  444444332         555666665555  12 24444555555555555554 3      11  44 4445


Q ss_pred             CCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCC
Q 043839          287 FPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRK  366 (415)
Q Consensus       287 lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~  366 (415)
                      + ++|++|++++|.+.+..|..+              +.+++|++|++++|..++.+|..++.+++|+.|++++|+.++.
T Consensus       228 l-~~L~~L~Ls~n~~~~~~p~~~--------------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          228 L-PKLEELDLRGCTALRNYPPIF--------------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             C-TTCCEEECTTCTTCCBCCCCT--------------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             C-CCCCEEECcCCcchhhhHHHh--------------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence            5 555555555555444444433              3456677777789988889999999999999999999999999


Q ss_pred             ChhhhcCCCCCCeEEEec
Q 043839          367 LPEELWCIKNLCKLELHW  384 (415)
Q Consensus       367 lp~~l~~l~~L~~L~l~~  384 (415)
                      +|.++.++++|+.+++..
T Consensus       293 iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          293 LPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CCGGGGGSCTTCEEECCG
T ss_pred             ccHHHhhccCceEEeCCH
Confidence            999999999999998875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=1.5e-23  Score=208.19  Aligned_cols=262  Identities=16%  Similarity=0.114  Sum_probs=220.5

Q ss_pred             CCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCccCCceEecCc------
Q 043839          110 DLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLFHLKYLKLIT------  182 (415)
Q Consensus       110 ~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~------  182 (415)
                      +.....++....++++.|.+.++..    ..+.+..|.++++|++|++++|.++ ..|..+.++++|++|++++      
T Consensus        20 ~~~l~~ip~~~~~~l~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~   95 (477)
T 2id5_A           20 RKRFVAVPEGIPTETRLLDLGKNRI----KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI   95 (477)
T ss_dssp             SCCCSSCCSCCCTTCSEEECCSSCC----CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred             CCCcCcCCCCCCCCCcEEECCCCcc----ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc
Confidence            3444446665578999999999988    5566678999999999999999999 5588899999999999998      


Q ss_pred             --ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhh
Q 043839          183 --PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLC  258 (415)
Q Consensus       183 --~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~  258 (415)
                        ..++++++|++|++++|.+....|..+..+++|++|++.++.  ...+..+..+++|+.|++++|  ......+..+.
T Consensus        96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~l~  173 (477)
T 2id5_A           96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC--NLTSIPTEALS  173 (477)
T ss_dssp             CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC--CCSSCCHHHHT
T ss_pred             CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC--cCcccChhHhc
Confidence              346789999999999887777778889999999999999988  444567899999999999998  45555566788


Q ss_pred             ccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CC
Q 043839          259 ELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NS  324 (415)
Q Consensus       259 ~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~  324 (415)
                      .+++|+.|++++ +      ++  ++  .+..+ ++|+.|++++|...+..+.......+|+.|++++          ..
T Consensus       174 ~l~~L~~L~l~~-n------~i~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  245 (477)
T 2id5_A          174 HLHGLIVLRLRH-L------NINAIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR  245 (477)
T ss_dssp             TCTTCCEEEEES-C------CCCEECTTCSCSC-TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred             ccCCCcEEeCCC-C------cCcEeChhhcccC-cccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc
Confidence            999999999998 4      22  33  67889 9999999999987777777666777999999987          35


Q ss_pred             CCCcccEEEeccCCCccceE-EcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          325 SFPLLKILHLKSMLWLEEWT-MGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       325 ~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      .+++|++|++++| .++.++ ..+..+++|+.|++++|...+..|..+..+++|+.|++++|.
T Consensus       246 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          246 HLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred             CccccCeeECCCC-cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence            6789999999999 566665 457899999999999999887678889999999999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=6.7e-24  Score=205.26  Aligned_cols=269  Identities=17%  Similarity=0.124  Sum_probs=159.9

Q ss_pred             CCceeEEEEEeCCCCCccCCCC---CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCccC
Q 043839           99 LANVKRCFILKDLTEFFPLEHS---DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLFH  174 (415)
Q Consensus        99 ~~~~r~l~l~~~~~~~~~~~~~---~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~  174 (415)
                      ...++++.+. +.....++...   +++|++|.+.++..    ..+.+..+..+++|++|++++|.++.+ |..++++++
T Consensus        44 l~~l~~l~l~-~~~l~~l~~~~~~~l~~L~~L~L~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  118 (390)
T 3o6n_A           44 LNNQKIVTFK-NSTMRKLPAALLDSFRQVELLNLNDLQI----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL  118 (390)
T ss_dssp             GCCCSEEEEE-SCEESEECTHHHHHCCCCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCceEEEec-CCchhhCChhHhcccccCcEEECCCCcc----cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence            3456666666 55555455433   66677777766665    344444566677777777777766644 344566677


Q ss_pred             CceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecc
Q 043839          175 LKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGD  245 (415)
Q Consensus       175 L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~  245 (415)
                      |++|++++        ..++++++|++|++++|.+....|..++.+++|++|++.++. ..++  ++.+++|+.|+++++
T Consensus       119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN  196 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSS
T ss_pred             CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccc
Confidence            77777666        124566667777776555554445556666777777766665 3322  334455555555544


Q ss_pred             cCcchhcHHHhhhccCCCcEEEeecCccc----------cccc-----cc--ccCCCCCCCCceEEEEEccccCCCCchh
Q 043839          246 LSYHHSGVSKSLCELHKLECLKLVNEGKM----------WQFS-----RM--ILSEYKFPPTLTQLSLSNTKLMEDPMPT  308 (415)
Q Consensus       246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~i----------l~~l-----~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~  308 (415)
                      .  ..     .+...++|+.|++++ +.+          ++.|     ++  .+++..+ ++|++|++++|.+.+..+..
T Consensus       197 ~--l~-----~~~~~~~L~~L~l~~-n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          197 L--LS-----TLAIPIAVEELDASH-NSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             C--CS-----EEECCSSCSEEECCS-SCCCEEECCCCSSCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESGG
T ss_pred             c--cc-----ccCCCCcceEEECCC-CeeeeccccccccccEEECCCCCCcccHHHcCC-CCccEEECCCCcCCCcChhH
Confidence            1  11     011122333333333 111          0100     11  2355666 77777777777776666667


Q ss_pred             hcCCCCCCeEeecc---------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCe
Q 043839          309 LEKLPLLEVLKLKQ---------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCK  379 (415)
Q Consensus       309 l~~l~~L~~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~  379 (415)
                      ++.+++|+.|++++         ...+++|++|++++| .++.+|..++.+++|+.|++++|+.. .+|  +..+++|+.
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~  343 (390)
T 3o6n_A          268 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKN  343 (390)
T ss_dssp             GTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSE
T ss_pred             ccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCccc-eeC--chhhccCCE
Confidence            77777777777776         335677777777777 56666666677777777777777654 343  566778888


Q ss_pred             EEEecCCh
Q 043839          380 LELHWPQP  387 (415)
Q Consensus       380 L~l~~c~~  387 (415)
                      |+++++|-
T Consensus       344 L~l~~N~~  351 (390)
T 3o6n_A          344 LTLSHNDW  351 (390)
T ss_dssp             EECCSSCE
T ss_pred             EEcCCCCc
Confidence            88877663

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=8.2e-25  Score=205.31  Aligned_cols=236  Identities=16%  Similarity=0.151  Sum_probs=151.3

Q ss_pred             CceeEEEeecCCCccccccchHHHhccCCcccEEEcCC-cccc-cCcccccCccCCceEecCc--------ccccccccC
Q 043839          122 MYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGS-AVLD-LYPPGLENLFHLKYLKLIT--------PLLKLMQKL  191 (415)
Q Consensus       122 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L  191 (415)
                      .+++.|.+.++....  ....+..+.++++|++|++++ +.+. .+|..++++++|++|++++        ..++++++|
T Consensus        50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            578888888877621  113456788888888888885 6666 7777777777777777765        334555566


Q ss_pred             cEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCC-CCCeEEEecccCcchhcHHHhhhccCCCcEEEe
Q 043839          192 MHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLP-NVQTLRISGDLSYHHSGVSKSLCELHKLECLKL  268 (415)
Q Consensus       192 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  268 (415)
                      ++|++++|.+...+|..++.+++|++|++.++.  +.+|..++.++ +|+.|++++|  ...+..|..+..++ |+.|++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N--~l~~~~~~~~~~l~-L~~L~L  204 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN--RLTGKIPPTFANLN-LAFVDL  204 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS--EEEEECCGGGGGCC-CSEEEC
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC--eeeccCChHHhCCc-ccEEEC
Confidence            666665555555555555556666666665555  35555555555 5566666555  33344444555444 555555


Q ss_pred             ecCccccccccc---cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceE
Q 043839          269 VNEGKMWQFSRM---IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWT  344 (415)
Q Consensus       269 ~~~~~il~~l~L---lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~  344 (415)
                      ++ +      ++   .| .+..+ ++|+.|++++|.+++..+. +              ..+++|++|++++|...+.+|
T Consensus       205 s~-N------~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~-~--------------~~l~~L~~L~Ls~N~l~~~~p  261 (313)
T 1ogq_A          205 SR-N------MLEGDASVLFGSD-KNTQKIHLAKNSLAFDLGK-V--------------GLSKNLNGLDLRNNRIYGTLP  261 (313)
T ss_dssp             CS-S------EEEECCGGGCCTT-SCCSEEECCSSEECCBGGG-C--------------CCCTTCCEEECCSSCCEECCC
T ss_pred             cC-C------cccCcCCHHHhcC-CCCCEEECCCCceeeecCc-c--------------cccCCCCEEECcCCcccCcCC
Confidence            54 2      11   33 44445 5555555555554322221 2              345677788888885545788


Q ss_pred             EcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          345 MGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       345 ~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      ..++.+++|+.|++++|...+.+|.. ..+++|+.+++.++|
T Consensus       262 ~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            88899999999999999988888865 778999999998876

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.90  E-value=1.9e-23  Score=213.54  Aligned_cols=249  Identities=22%  Similarity=0.140  Sum_probs=160.9

Q ss_pred             ceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCcEE
Q 043839          123 YLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHL  194 (415)
Q Consensus       123 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L  194 (415)
                      +++.+.+.++..    ..+.+..|.++++|++|++++|.++.+|..++++++|++|++++        ..++++++|++|
T Consensus       255 ~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  330 (606)
T 3t6q_A          255 SVESINLQKHYF----FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL  330 (606)
T ss_dssp             EEEEEECTTCCC----SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred             ceeEEEeecCcc----CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence            788888888776    45556668889999999999999888888888899999999987        356778889999


Q ss_pred             EecCCCCCCCCCCc-ccCccccceeccccCC-CCC---ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEee
Q 043839          195 NFGSITMPSPPNNY-SSSLKDLIFISAVHPS-SCT---PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLV  269 (415)
Q Consensus       195 ~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~-~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~  269 (415)
                      ++++|.....+|.. ++.+++|++|++.++. ...   +..++.+++|++|++++|  ...+..+..+..+++|+.|+++
T Consensus       331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~  408 (606)
T 3t6q_A          331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN--EPLSLKTEAFKECPQLELLDLA  408 (606)
T ss_dssp             ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC--SCEEECTTTTTTCTTCSEEECT
T ss_pred             ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC--cCCcCCHHHhcCCccCCeEECC
Confidence            99877766666654 7888889999888887 332   566788888888888888  4555556677788888888887


Q ss_pred             cCccccccccccc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc-------------CCCCCcccEEEe
Q 043839          270 NEGKMWQFSRMIL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ-------------NSSFPLLKILHL  334 (415)
Q Consensus       270 ~~~~il~~l~Llp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-------------~~~~~~L~~L~l  334 (415)
                      + +.+-.   ..|  ++..+ ++|+.|++++|.+.+..+..++.+++|+.|++++             ...+++|++|++
T Consensus       409 ~-n~l~~---~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L  483 (606)
T 3t6q_A          409 F-TRLKV---KDAQSPFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL  483 (606)
T ss_dssp             T-CCEEC---CTTCCTTTTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred             C-CcCCC---cccchhhhCc-ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence            7 31100   011  24455 5555555555555444445555555555555544             112344555555


Q ss_pred             ccCCCccce-EEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEec
Q 043839          335 KSMLWLEEW-TMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHW  384 (415)
Q Consensus       335 ~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~  384 (415)
                      ++| .++.+ |..++.+++|+.|++++|...+..|..+.++++| .|++++
T Consensus       484 s~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~  532 (606)
T 3t6q_A          484 SFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS  532 (606)
T ss_dssp             TTS-CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred             CCC-ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence            555 23322 2344455555555555554444334444444444 444433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=4.5e-23  Score=196.18  Aligned_cols=262  Identities=16%  Similarity=0.139  Sum_probs=215.0

Q ss_pred             CCCceeEEEEEeCCCCCccCCCC-CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCc
Q 043839           98 SLANVKRCFILKDLTEFFPLEHS-DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLK  176 (415)
Q Consensus        98 ~~~~~r~l~l~~~~~~~~~~~~~-~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~  176 (415)
                      ....++.+.+. ++....++... +++|++|.+.++...    .+  ..+.++++|++|++++|.+..++. +..+++|+
T Consensus        64 ~~~~L~~L~l~-~n~i~~~~~~~~l~~L~~L~L~~n~i~----~~--~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~  135 (347)
T 4fmz_A           64 YLTNLEYLNLN-GNQITDISPLSNLVKLTNLYIGTNKIT----DI--SALQNLTNLRELYLNEDNISDISP-LANLTKMY  135 (347)
T ss_dssp             GCTTCCEEECC-SSCCCCCGGGTTCTTCCEEECCSSCCC----CC--GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCC
T ss_pred             hcCCccEEEcc-CCccccchhhhcCCcCCEEEccCCccc----Cc--hHHcCCCcCCEEECcCCcccCchh-hccCCcee
Confidence            45678999998 77766565544 999999999998774    32  358999999999999999998877 88999999


Q ss_pred             eEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCc
Q 043839          177 YLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSY  248 (415)
Q Consensus       177 ~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~  248 (415)
                      +|++++       +.+..+++|++|++++|.. ..++. ++.+++|++|++.++. ..++. +..+++|+.|+++++.  
T Consensus       136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~--  210 (347)
T 4fmz_A          136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ--  210 (347)
T ss_dssp             EEECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC--
T ss_pred             EEECCCCCCcccccchhhCCCCcEEEecCCCc-CCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCC--
Confidence            999998       5688899999999995554 44444 8899999999999998 55555 8899999999999983  


Q ss_pred             chhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----
Q 043839          249 HHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----  322 (415)
Q Consensus       249 ~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----  322 (415)
                      ..+. +. +..+++|+.|++++ +      ++  +|.+..+ ++|++|++++|.++.  .+.++.+++|+.|++++    
T Consensus       211 l~~~-~~-~~~~~~L~~L~l~~-n------~l~~~~~~~~l-~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~n~l~  278 (347)
T 4fmz_A          211 ITDI-TP-VANMTRLNSLKIGN-N------KITDLSPLANL-SQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS  278 (347)
T ss_dssp             CCCC-GG-GGGCTTCCEEECCS-S------CCCCCGGGTTC-TTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCC
T ss_pred             CCCC-ch-hhcCCcCCEEEccC-C------ccCCCcchhcC-CCCCEEECCCCccCC--ChhHhcCCCcCEEEccCCccC
Confidence            3332 22 78899999999998 4      22  4456788 999999999998864  36788999999999998    


Q ss_pred             ----CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          323 ----NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       323 ----~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                          ...+++|++|++++|......+..++.+++|+.|++++|+..+ ++. +..+++|++|++++|+
T Consensus       279 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          279 DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             CCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC-CGG-GGGCTTCSEESSSCC-
T ss_pred             CChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc-ccC-hhhhhccceeehhhhc
Confidence                4567899999999995544555668899999999999999775 444 8889999999999987

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=6.5e-24  Score=218.07  Aligned_cols=254  Identities=13%  Similarity=0.093  Sum_probs=120.4

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc-cc--cCcccccCc------cCCceEecCc-------c-
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV-LD--LYPPGLENL------FHLKYLKLIT-------P-  183 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~--~lp~~i~~l------~~L~~L~l~~-------~-  183 (415)
                      +++|++|.+.++..    ....+..+.++++|++|++++|. ++  .+|..++++      ++|++|++++       . 
T Consensus       248 l~~L~~L~L~~n~l----~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~  323 (636)
T 4eco_A          248 LKDLTDVEVYNCPN----LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE  323 (636)
T ss_dssp             CTTCCEEEEECCTT----CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred             cCCCCEEEecCCcC----CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence            35555555555544    22233445555555555555554 44  355555444      5555555555       1 


Q ss_pred             -cccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCC-CCeEEEecccCcchhcHHHhhhcc
Q 043839          184 -LLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPN-VQTLRISGDLSYHHSGVSKSLCEL  260 (415)
Q Consensus       184 -~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~l~~l  260 (415)
                       .++++++|++|++++|.+.+.+| .++.+++|++|++.++. ..+|..++.+++ |++|++++|  ... .+|..+..+
T Consensus       324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N--~l~-~lp~~~~~~  399 (636)
T 4eco_A          324 TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN--KLK-YIPNIFDAK  399 (636)
T ss_dssp             HHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS--CCS-SCCSCCCTT
T ss_pred             hhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC--cCc-ccchhhhhc
Confidence             34455555555555444443455 45555555555555554 444444555555 555555554  122 344433332


Q ss_pred             C--CCcEEEeecCcccccc--------------------c-----cc--cc--CCCCCCCCceEEEEEccccCCCCchh-
Q 043839          261 H--KLECLKLVNEGKMWQF--------------------S-----RM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPT-  308 (415)
Q Consensus       261 ~--~L~~L~l~~~~~il~~--------------------l-----~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~-  308 (415)
                      +  +|+.|++++ +.+-..                    |     ++  +|  .+..+ ++|++|++++|.++ .+|.. 
T Consensus       400 ~l~~L~~L~Ls~-N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l-~~L~~L~Ls~N~l~-~i~~~~  476 (636)
T 4eco_A          400 SVSVMSAIDFSY-NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG-SPLSSINLMGNMLT-EIPKNS  476 (636)
T ss_dssp             CSSCEEEEECCS-SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTT-CCCSEEECCSSCCS-BCCSSS
T ss_pred             ccCccCEEECcC-CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccC-CCCCEEECCCCCCC-CcCHHH
Confidence            2  455555544 210000                    0     11  33  22234 55555555555544 22221 


Q ss_pred             hcC-------CCCCCeEeecc---------C--CCCCcccEEEeccCCCccceEEcCCCccCccEEEEe------cCccc
Q 043839          309 LEK-------LPLLEVLKLKQ---------N--SSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILN------PCAYL  364 (415)
Q Consensus       309 l~~-------l~~L~~L~l~~---------~--~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~------~c~~~  364 (415)
                      +..       +++|+.|++++         .  ..+++|++|++++| .++.+|..++.+++|+.|+++      +|...
T Consensus       477 ~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~  555 (636)
T 4eco_A          477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL  555 (636)
T ss_dssp             SEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred             hccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCccc
Confidence            111       12555555554         1  14455555555555 333455555555555555553      33344


Q ss_pred             CCChhhhcCCCCCCeEEEecCC
Q 043839          365 RKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       365 ~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      +.+|..+..+++|+.|++++|.
T Consensus       556 ~~~p~~l~~l~~L~~L~Ls~N~  577 (636)
T 4eco_A          556 REWPEGITLCPSLTQLQIGSND  577 (636)
T ss_dssp             CCCCTTGGGCSSCCEEECCSSC
T ss_pred             ccChHHHhcCCCCCEEECCCCc
Confidence            4555555555555555555544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.90  E-value=2.8e-23  Score=212.33  Aligned_cols=121  Identities=17%  Similarity=0.052  Sum_probs=78.0

Q ss_pred             CCceeEEEEEeCCCCCccCC-CC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCccC
Q 043839           99 LANVKRCFILKDLTEFFPLE-HS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLFH  174 (415)
Q Consensus        99 ~~~~r~l~l~~~~~~~~~~~-~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~  174 (415)
                      +..++.+.+. ++....++. .+  +++||+|.+.++..    ..+.+..|.++++|++|++++|.++.+ |..++++++
T Consensus        31 ~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l----~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  105 (606)
T 3vq2_A           31 PSSTKNIDLS-FNPLKILKSYSFSNFSELQWLDLSRCEI----ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS  105 (606)
T ss_dssp             CTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred             CCCcCEEECC-CCCcCEeChhhccCCccCcEEeCCCCcc----cccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence            4556777776 655554443 22  67777777777665    444455677777777777777777644 666777777


Q ss_pred             CceEecCc--------ccccccccCcEEEecCCCCCC-CCCCcccCccccceeccccCC
Q 043839          175 LKYLKLIT--------PLLKLMQKLMHLNFGSITMPS-PPNNYSSSLKDLIFISAVHPS  224 (415)
Q Consensus       175 L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~  224 (415)
                      |++|++++        ..++++++|++|++++|.+.. .+|..++++++|++|++.++.
T Consensus       106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A          106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence            77777766        345666677777777555443 456666666666666666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=1.4e-23  Score=215.59  Aligned_cols=270  Identities=17%  Similarity=0.175  Sum_probs=185.2

Q ss_pred             CCceeEEEEEeCCC-CCccCCCC--CCceeEEEeecCC-Ccccccc-chHHHhccC------CcccEEEcCCcccccCcc
Q 043839           99 LANVKRCFILKDLT-EFFPLEHS--DMYLQSFLNHSSE-SDHLAGI-DCENFCKKF------KHLRVLNLGSAVLDLYPP  167 (415)
Q Consensus        99 ~~~~r~l~l~~~~~-~~~~~~~~--~~~Lr~L~~~~~~-~~~~~~~-~~~~~~~~~------~~L~~L~l~~~~~~~lp~  167 (415)
                      ....+.+.+. ++. ...++..+  +++|++|.+.++. .    .. ..+..+.++      ++|++|++++|.++.+|.
T Consensus       248 l~~L~~L~L~-~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l----~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~  322 (636)
T 4eco_A          248 LKDLTDVEVY-NCPNLTKLPTFLKALPEMQLINVACNRGI----SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV  322 (636)
T ss_dssp             CTTCCEEEEE-CCTTCSSCCTTTTTCSSCCEEECTTCTTS----CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC
T ss_pred             cCCCCEEEec-CCcCCccChHHHhcCCCCCEEECcCCCCC----ccccchHHHHhhhccccCCCCCEEECCCCcCCccCc
Confidence            4568889888 654 33466655  8899999999887 4    22 344555554      788888888888877877


Q ss_pred             --cccCccCCceEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCccc-cceeccccCC-CCCccccCCCC-
Q 043839          168 --GLENLFHLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKD-LIFISAVHPS-SCTPDILGRLP-  235 (415)
Q Consensus       168 --~i~~l~~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~l~~~~-~~~~~~l~~l~-  235 (415)
                        .++++++|++|++++       +.++++++|++|++++|.+. .+|..++.+++ |++|++.++. ..+|..++.++ 
T Consensus       323 ~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l  401 (636)
T 4eco_A          323 ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV  401 (636)
T ss_dssp             HHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCS
T ss_pred             hhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhccc
Confidence              788888888888777       23445566666666644433 55555666665 6666666555 44444444332 


Q ss_pred             -CCCeEEEecccCcchhcHHHhhh-------------------------------ccCCCcEEEeecCccccccccc--c
Q 043839          236 -NVQTLRISGDLSYHHSGVSKSLC-------------------------------ELHKLECLKLVNEGKMWQFSRM--I  281 (415)
Q Consensus       236 -~L~~L~l~~~~~~~~~~~~~~l~-------------------------------~l~~L~~L~l~~~~~il~~l~L--l  281 (415)
                       +|+.|++++|  ...+..|..+.                               .+++|+.|++++ +      ++  +
T Consensus       402 ~~L~~L~Ls~N--~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~-N------~l~~i  472 (636)
T 4eco_A          402 SVMSAIDFSYN--EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG-N------MLTEI  472 (636)
T ss_dssp             SCEEEEECCSS--CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS-S------CCSBC
T ss_pred             CccCEEECcCC--cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC-C------CCCCc
Confidence             4555555444  23333333333                               355555555555 3      22  5


Q ss_pred             c-CCCC-CC------CCceEEEEEccccCCCCchhhc--CCCCCCeEeecc---------CCCCCcccEEEecc------
Q 043839          282 L-SEYK-FP------PTLTQLSLSNTKLMEDPMPTLE--KLPLLEVLKLKQ---------NSSFPLLKILHLKS------  336 (415)
Q Consensus       282 p-~~~~-lp------~~L~~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~---------~~~~~~L~~L~l~~------  336 (415)
                      | .... .+      ++|+.|++++|.++ .+|..+.  .+++|+.|++++         ...+++|++|++++      
T Consensus       473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~  551 (636)
T 4eco_A          473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQG  551 (636)
T ss_dssp             CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTC
T ss_pred             CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCccccc
Confidence            5 3222 20      29999999999987 6777776  999999999998         34578999999954      


Q ss_pred             CCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839          337 MLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       337 ~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~  387 (415)
                      |...+.+|..++.+++|+.|++++|.. +.+|..+.  ++|+.|++++|+-
T Consensus       552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l  599 (636)
T 4eco_A          552 NRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPN  599 (636)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTT
T ss_pred             CcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCC
Confidence            545668888999999999999999988 78998765  8999999999974

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.90  E-value=3.5e-23  Score=211.67  Aligned_cols=142  Identities=15%  Similarity=0.016  Sum_probs=100.0

Q ss_pred             CCCceeEEEEEeCCCCCccCC-CC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCcc
Q 043839           98 SLANVKRCFILKDLTEFFPLE-HS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLF  173 (415)
Q Consensus        98 ~~~~~r~l~l~~~~~~~~~~~-~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~  173 (415)
                      .+..++.+.+. ++....+.. .+  +++||+|.+.++..    ..+.+..|.++++|++|++++|.++ ..|..+++++
T Consensus        31 l~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  105 (606)
T 3t6q_A           31 LPNSTECLEFS-FNVLPTIQNTTFSRLINLTFLDLTRCQI----YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK  105 (606)
T ss_dssp             SCTTCCEEECT-TCCCSEECTTTSTTCTTCSEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred             CCCcCcEEEcc-CCccCcCChhHhccCccceEEECCCCcc----ceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence            35567888887 766665533 33  78888888888876    4555677888888888888888887 5577788888


Q ss_pred             CCceEecCc--------ccccccccCcEEEecCCCCCC-CCCCcccCccccceeccccCC-C-CCccccCCCCCCC--eE
Q 043839          174 HLKYLKLIT--------PLLKLMQKLMHLNFGSITMPS-PPNNYSSSLKDLIFISAVHPS-S-CTPDILGRLPNVQ--TL  240 (415)
Q Consensus       174 ~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~--~L  240 (415)
                      +|++|++++        ..++++++|++|++++|.+.. ..|. +..+++|++|++.++. . ..+..++.+++|+  .|
T Consensus       106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L  184 (606)
T 3t6q_A          106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL  184 (606)
T ss_dssp             TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEE
T ss_pred             cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhcccceeEE
Confidence            888888887        445677888888888666554 2344 3347888888888776 3 3345566667776  55


Q ss_pred             EEecc
Q 043839          241 RISGD  245 (415)
Q Consensus       241 ~l~~~  245 (415)
                      ++++|
T Consensus       185 ~l~~n  189 (606)
T 3t6q_A          185 NLNGN  189 (606)
T ss_dssp             ECTTC
T ss_pred             ecCCC
Confidence            55555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=1.8e-22  Score=195.14  Aligned_cols=250  Identities=15%  Similarity=0.073  Sum_probs=204.7

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCc-ccccCccCCceEecCc--------ccccccccC
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYP-PGLENLFHLKYLKLIT--------PLLKLMQKL  191 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~--------~~i~~l~~L  191 (415)
                      .+++|.+.+.++..    ..+.+..+..+++|++|++++|.++.++ ..+..+++|++|++++        ..++++++|
T Consensus        44 l~~l~~l~l~~~~l----~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           44 LNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GCCCSEEEEESCEE----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCceEEEecCCch----hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            78999999999887    5677778999999999999999999554 5889999999999998        447889999


Q ss_pred             cEEEecCCCCCCCCCCc-ccCccccceeccccCC-CCC-ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEe
Q 043839          192 MHLNFGSITMPSPPNNY-SSSLKDLIFISAVHPS-SCT-PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKL  268 (415)
Q Consensus       192 ~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  268 (415)
                      ++|++++|.+. .+|.. ++.+++|++|++.++. ..+ +..++.+++|++|++++|.  ... +  .+..+++|+.|++
T Consensus       120 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~-~--~~~~l~~L~~L~l  193 (390)
T 3o6n_A          120 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTH-V--DLSLIPSLFHANV  193 (390)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSB-C--CGGGCTTCSEEEC
T ss_pred             CEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc--CCc-c--ccccccccceeec
Confidence            99999966554 66665 5899999999999998 444 5568999999999999983  332 2  3667899999999


Q ss_pred             ecCccc--------cccccc-------ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------C
Q 043839          269 VNEGKM--------WQFSRM-------ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------N  323 (415)
Q Consensus       269 ~~~~~i--------l~~l~L-------lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~  323 (415)
                      ++ +.+        ++.+.+       +| ...+ ++|+.|++++|.+++  ++.++.+++|+.|++++          .
T Consensus       194 ~~-n~l~~~~~~~~L~~L~l~~n~l~~~~-~~~~-~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  268 (390)
T 3o6n_A          194 SY-NLLSTLAIPIAVEELDASHNSINVVR-GPVN-VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF  268 (390)
T ss_dssp             CS-SCCSEEECCSSCSEEECCSSCCCEEE-CCCC-SSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             cc-ccccccCCCCcceEEECCCCeeeecc-cccc-ccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCcChhHc
Confidence            88 422        222211       12 1123 789999999998864  36789999999999998          4


Q ss_pred             CCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839          324 SSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       324 ~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~  387 (415)
                      ..+++|++|++++| .++.++...+.+++|+.|++++|... .+|..+..+++|+.|++++|+-
T Consensus       269 ~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i  330 (390)
T 3o6n_A          269 VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI  330 (390)
T ss_dssp             TTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred             cccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcc
Confidence            56789999999998 78889988899999999999999765 7888888999999999999873

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.90  E-value=5.3e-23  Score=206.47  Aligned_cols=101  Identities=19%  Similarity=0.195  Sum_probs=76.8

Q ss_pred             CCCCCCCCceEEEEEccccCCCCch-hhcCCCCCCeEeecc-------CCCC-CcccEEEeccCCCccceEEcCCCccCc
Q 043839          283 SEYKFPPTLTQLSLSNTKLMEDPMP-TLEKLPLLEVLKLKQ-------NSSF-PLLKILHLKSMLWLEEWTMGAGSMPKL  353 (415)
Q Consensus       283 ~~~~lp~~L~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~-------~~~~-~~L~~L~l~~~~~l~~l~~~~~~l~~L  353 (415)
                      .+..+ ++|++|++++|.+.+.++. .+..+++|+.|++++       ...+ ++|++|++++| .++.+|..+..+++|
T Consensus       369 ~~~~l-~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L  446 (520)
T 2z7x_B          369 MTTQM-KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEAL  446 (520)
T ss_dssp             HHTTC-TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTC
T ss_pred             HHhhC-CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCC
Confidence            45666 7777777777776553444 366677777777776       1223 58899999988 677888888899999


Q ss_pred             cEEEEecCcccCCChhh-hcCCCCCCeEEEecCC
Q 043839          354 ESLILNPCAYLRKLPEE-LWCIKNLCKLELHWPQ  386 (415)
Q Consensus       354 ~~L~l~~c~~~~~lp~~-l~~l~~L~~L~l~~c~  386 (415)
                      +.|++++|... .+|.. +..+++|+.|+++++|
T Consensus       447 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          447 QELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence            99999999776 67865 8889999999999866

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.90  E-value=2e-23  Score=205.96  Aligned_cols=261  Identities=16%  Similarity=0.070  Sum_probs=205.0

Q ss_pred             cCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cC-cccccCccCCceEecCc--------ccc
Q 043839          116 PLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LY-PPGLENLFHLKYLKLIT--------PLL  185 (415)
Q Consensus       116 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l-p~~i~~l~~L~~L~l~~--------~~i  185 (415)
                      ++. ..+++++|.+.++..    ....+..+.++++|++|++++|.+. .+ |..+.++++|++|++++        ..+
T Consensus        25 lp~-l~~~l~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   99 (455)
T 3v47_A           25 VPE-LPAHVNYVDLSLNSI----AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF   99 (455)
T ss_dssp             CCC-CCTTCCEEECCSSCC----CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT
T ss_pred             CCC-CCCccCEEEecCCcc----CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc
Confidence            444 468999999999987    5566778999999999999999986 44 56789999999999998        467


Q ss_pred             cccccCcEEEecCCCCCCCCCCc--ccCccccceeccccCC-CCC-ccc-cCCCCCCCeEEEecccCcchhcHHHhhhc-
Q 043839          186 KLMQKLMHLNFGSITMPSPPNNY--SSSLKDLIFISAVHPS-SCT-PDI-LGRLPNVQTLRISGDLSYHHSGVSKSLCE-  259 (415)
Q Consensus       186 ~~l~~L~~L~l~~~~~~~~~p~~--i~~l~~L~~L~l~~~~-~~~-~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~-  259 (415)
                      +++++|++|++++|.+.+.+|..  ++.+++|++|++.++. ... |.. ++.+++|++|++++|.  ..+..+..+.. 
T Consensus       100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~l  177 (455)
T 3v47_A          100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK--VKSICEEDLLNF  177 (455)
T ss_dssp             TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC--BSCCCTTTSGGG
T ss_pred             cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc--ccccChhhhhcc
Confidence            88999999999977776655554  8999999999999998 444 554 7899999999999983  44433433333 


Q ss_pred             ---------------------------------cCCCcEEEeecCccc----------------cccccc----------
Q 043839          260 ---------------------------------LHKLECLKLVNEGKM----------------WQFSRM----------  280 (415)
Q Consensus       260 ---------------------------------l~~L~~L~l~~~~~i----------------l~~l~L----------  280 (415)
                                                       +++|+.|++++ +.+                ++.+.+          
T Consensus       178 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  256 (455)
T 3v47_A          178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG-NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF  256 (455)
T ss_dssp             TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT-SCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred             ccccccccccccCcccccchhhccccccccccccceeeeEecCC-CcccccchhhhhccccccceeeEeecccccccccc
Confidence                                             35677777776 322                111100          


Q ss_pred             ----c----c-CCC--CCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCC
Q 043839          281 ----I----L-SEY--KFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLW  339 (415)
Q Consensus       281 ----l----p-~~~--~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~  339 (415)
                          +    + .+.  .. ++|+.|++++|.+.+..+..++.+++|+.|++++          ...+++|++|++++| .
T Consensus       257 ~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~  334 (455)
T 3v47_A          257 GHTNFKDPDNFTFKGLEA-SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-F  334 (455)
T ss_dssp             TCCSSCCCCTTTTGGGTT-SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred             chhhhccCcccccccccc-cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-c
Confidence                0    0 011  13 5899999999998878888899999999999987          446789999999999 5


Q ss_pred             ccce-EEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          340 LEEW-TMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       340 l~~l-~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      ++.+ +..++.+++|+.|++++|...+..|..+..+++|++|++++|.
T Consensus       335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ  382 (455)
T ss_dssp             CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence            6665 4668899999999999998877668889999999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=5.5e-23  Score=209.77  Aligned_cols=267  Identities=17%  Similarity=0.120  Sum_probs=153.2

Q ss_pred             ceeEEEEEeCCCCCccCCCC---CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCc-ccccCccCCc
Q 043839          101 NVKRCFILKDLTEFFPLEHS---DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYP-PGLENLFHLK  176 (415)
Q Consensus       101 ~~r~l~l~~~~~~~~~~~~~---~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~  176 (415)
                      ..+.+.+. ++....++...   +++|++|.+.++..    ..+.+..|..+++|++|++++|.++.+| ..++++++|+
T Consensus        52 ~l~~l~l~-~~~l~~lp~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           52 NQKIVTFK-NSTMRKLPAALLDSFRQVELLNLNDLQI----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             CCSEEEES-SCEESEECTHHHHHCCCCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CceEEEee-CCCCCCcCHHHHccCCCCcEEECCCCCC----CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            34555555 44444344332   55666666665554    3333445556666666666666655333 3345566666


Q ss_pred             eEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccC
Q 043839          177 YLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLS  247 (415)
Q Consensus       177 ~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~  247 (415)
                      +|++++        ..++++++|++|++++|.+....|..++.+++|++|++.++. ..++  ++.+++|+.|+++++. 
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~-  203 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL-  203 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSC-
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCc-
Confidence            666655        123555666666666554444444455566666666665555 2222  3334445555444441 


Q ss_pred             cchhcHHHhhhccCCCcEEEeecCccc----------cccc-----cc--ccCCCCCCCCceEEEEEccccCCCCchhhc
Q 043839          248 YHHSGVSKSLCELHKLECLKLVNEGKM----------WQFS-----RM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLE  310 (415)
Q Consensus       248 ~~~~~~~~~l~~l~~L~~L~l~~~~~i----------l~~l-----~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~  310 (415)
                       ..     .+....+|+.|++++ +.+          |+.|     ++  .+++..+ ++|+.|++++|.+.+..|..++
T Consensus       204 -l~-----~l~~~~~L~~L~ls~-n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          204 -LS-----TLAIPIAVEELDASH-NSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             -CS-----EEECCTTCSEEECCS-SCCCEEECSCCSCCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESGGGT
T ss_pred             -cc-----cccCCchhheeeccC-CcccccccccCCCCCEEECCCCCCCCChhhccC-CCCCEEECCCCccCCCCHHHhc
Confidence             11     011222334444333 111          1111     11  2256667 7888888888877766677777


Q ss_pred             CCCCCCeEeecc---------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEE
Q 043839          311 KLPLLEVLKLKQ---------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLE  381 (415)
Q Consensus       311 ~l~~L~~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~  381 (415)
                      .+++|+.|++++         ...+++|++|++++| .+..+|..++.+++|+.|++++|.... +|  +..+++|+.|+
T Consensus       276 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~  351 (597)
T 3oja_B          276 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLT  351 (597)
T ss_dssp             TCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEE
T ss_pred             CccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEE
Confidence            888888888876         344778888888887 566777777778888888888887653 33  56678888888


Q ss_pred             EecCCh
Q 043839          382 LHWPQP  387 (415)
Q Consensus       382 l~~c~~  387 (415)
                      ++++|-
T Consensus       352 l~~N~~  357 (597)
T 3oja_B          352 LSHNDW  357 (597)
T ss_dssp             CCSSCE
T ss_pred             eeCCCC
Confidence            888774

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=9.6e-23  Score=214.06  Aligned_cols=141  Identities=11%  Similarity=0.034  Sum_probs=79.3

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc-cc--cCcccccCcc-------CCceEecCc-------c
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV-LD--LYPPGLENLF-------HLKYLKLIT-------P  183 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~--~lp~~i~~l~-------~L~~L~l~~-------~  183 (415)
                      +++|+.|.+.++..    ....+..+.++++|++|++++|. ++  .+|..++++.       +|++|++++       .
T Consensus       490 L~~L~~L~Ls~N~l----~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~  565 (876)
T 4ecn_A          490 LKDLTDVELYNCPN----MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA  565 (876)
T ss_dssp             CTTCCEEEEESCTT----CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred             CCCCCEEECcCCCC----CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence            45666666666554    22334556666666666666665 55  3555555544       666666665       2


Q ss_pred             --cccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCC-CCeEEEecccCcchhcHHHhhhc
Q 043839          184 --LLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPN-VQTLRISGDLSYHHSGVSKSLCE  259 (415)
Q Consensus       184 --~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~l~~  259 (415)
                        .++++++|++|++++|.+. .+| .++.+++|++|++.++. ..+|..+..+++ |+.|++++|  ... .+|..+..
T Consensus       566 ~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N--~L~-~lp~~~~~  640 (876)
T 4ecn_A          566 SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN--KLK-YIPNIFNA  640 (876)
T ss_dssp             HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS--CCC-SCCSCCCT
T ss_pred             hhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC--CCC-cCchhhhc
Confidence              3555666666666644443 555 56666666666666665 555555666666 666666665  222 44444443


Q ss_pred             cC--CCcEEEeec
Q 043839          260 LH--KLECLKLVN  270 (415)
Q Consensus       260 l~--~L~~L~l~~  270 (415)
                      ++  +|+.|++++
T Consensus       641 ~~~~~L~~L~Ls~  653 (876)
T 4ecn_A          641 KSVYVMGSVDFSY  653 (876)
T ss_dssp             TCSSCEEEEECCS
T ss_pred             cccCCCCEEECcC
Confidence            32  255555555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.89  E-value=2.8e-22  Score=203.25  Aligned_cols=102  Identities=22%  Similarity=0.149  Sum_probs=70.6

Q ss_pred             CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc-----------CCCCCcccEEEeccCCCccce-EEcCCCc
Q 043839          283 SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ-----------NSSFPLLKILHLKSMLWLEEW-TMGAGSM  350 (415)
Q Consensus       283 ~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-----------~~~~~~L~~L~l~~~~~l~~l-~~~~~~l  350 (415)
                      .+..+ ++|++|++++|.+.+..+..++.+++|++|++++           ...+++|++|++++| .++.+ |..++.+
T Consensus       416 ~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l  493 (570)
T 2z63_A          416 VFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSL  493 (570)
T ss_dssp             TTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTC
T ss_pred             hhhcC-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcc
Confidence            34556 6677777777766656666677777777777765           234567778888777 44444 5667778


Q ss_pred             cCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          351 PKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       351 ~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      ++|+.|++++|...+..|..+.++++|+.|+++++|
T Consensus       494 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence            888888888887665555667778888888888744

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=1.5e-22  Score=205.24  Aligned_cols=144  Identities=17%  Similarity=0.170  Sum_probs=107.7

Q ss_pred             CCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc-----cc-CCCCCCCCceEEEEEccccCCCC
Q 043839          232 GRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM-----IL-SEYKFPPTLTQLSLSNTKLMEDP  305 (415)
Q Consensus       232 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L-----lp-~~~~lp~~L~~L~l~~~~l~~~~  305 (415)
                      +.+++|++|++++|  ...+..|..+..+++|+.|++++ +      ++     +| .+..+ ++|+.|++++|.+++..
T Consensus       350 ~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~-N------~l~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~  419 (562)
T 3a79_B          350 PSPSSFTFLNFTQN--VFTDSVFQGCSTLKRLQTLILQR-N------GLKNFFKVALMTKNM-SSLETLDVSLNSLNSHA  419 (562)
T ss_dssp             SSCCCCCEEECCSS--CCCTTTTTTCCSCSSCCEEECCS-S------CCCBTTHHHHTTTTC-TTCCEEECTTSCCBSCC
T ss_pred             cCCCCceEEECCCC--ccccchhhhhcccCCCCEEECCC-C------CcCCcccchhhhcCC-CCCCEEECCCCcCCCcc
Confidence            44556666666665  34444555666666666666665 3      22     34 57778 88888888888887634


Q ss_pred             ch-hhcCCCCCCeEeecc-------CCCC-CcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhh-hcCCC
Q 043839          306 MP-TLEKLPLLEVLKLKQ-------NSSF-PLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEE-LWCIK  375 (415)
Q Consensus       306 ~~-~l~~l~~L~~L~l~~-------~~~~-~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~-l~~l~  375 (415)
                      +. .+..+++|+.|++++       ...+ ++|++|++++| .++.+|..+..+++|+.|++++|... .+|.. +..++
T Consensus       420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~  497 (562)
T 3a79_B          420 YDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLT  497 (562)
T ss_dssp             SSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCT
T ss_pred             ChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCC
Confidence            43 577788888888887       2334 68999999999 78899988889999999999999877 68876 88999


Q ss_pred             CCCeEEEecCCh
Q 043839          376 NLCKLELHWPQP  387 (415)
Q Consensus       376 ~L~~L~l~~c~~  387 (415)
                      +|+.|+++++|-
T Consensus       498 ~L~~L~l~~N~~  509 (562)
T 3a79_B          498 SLQYIWLHDNPW  509 (562)
T ss_dssp             TCCCEECCSCCB
T ss_pred             CCCEEEecCCCc
Confidence            999999998763

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=2e-23  Score=195.87  Aligned_cols=241  Identities=14%  Similarity=0.084  Sum_probs=197.7

Q ss_pred             CceeEEEEEeCCCCC---ccCCCC--CCceeEEEeec-CCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCc
Q 043839          100 ANVKRCFILKDLTEF---FPLEHS--DMYLQSFLNHS-SESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENL  172 (415)
Q Consensus       100 ~~~r~l~l~~~~~~~---~~~~~~--~~~Lr~L~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l  172 (415)
                      .+++.+.+. ++...   .++..+  +++|++|.+.+ +..    ....+..+.++++|++|++++|.++ .+|..+.++
T Consensus        50 ~~l~~L~L~-~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l----~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  124 (313)
T 1ogq_A           50 YRVNNLDLS-GLNLPKPYPIPSSLANLPYLNFLYIGGINNL----VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI  124 (313)
T ss_dssp             CCEEEEEEE-CCCCSSCEECCGGGGGCTTCSEEEEEEETTE----ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred             ceEEEEECC-CCCccCCcccChhHhCCCCCCeeeCCCCCcc----cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence            679999999 77665   355555  99999999995 655    3345677899999999999999998 999999999


Q ss_pred             cCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCcc-ccceeccccCC--CCCccccCCCCCCCeEE
Q 043839          173 FHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLK-DLIFISAVHPS--SCTPDILGRLPNVQTLR  241 (415)
Q Consensus       173 ~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~l~~~~--~~~~~~l~~l~~L~~L~  241 (415)
                      ++|++|++++        ..++++++|++|++++|.+.+.+|..++.++ +|++|++.++.  +..|..++.++ |+.|+
T Consensus       125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~  203 (313)
T 1ogq_A          125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD  203 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred             CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence            9999999998        5678899999999998887778999999998 99999999998  57888888887 99999


Q ss_pred             EecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeec
Q 043839          242 ISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLK  321 (415)
Q Consensus       242 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  321 (415)
                      +++|  ...+..+..+..+++|+.|++++ +.+-..   +|.+..+ ++|++|++++|.+++..|..++.+++|+.|+  
T Consensus       204 Ls~N--~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~---~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~--  274 (313)
T 1ogq_A          204 LSRN--MLEGDASVLFGSDKNTQKIHLAK-NSLAFD---LGKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN--  274 (313)
T ss_dssp             CCSS--EEEECCGGGCCTTSCCSEEECCS-SEECCB---GGGCCCC-TTCCEEECCSSCCEECCCGGGGGCTTCCEEE--
T ss_pred             CcCC--cccCcCCHHHhcCCCCCEEECCC-Cceeee---cCccccc-CCCCEEECcCCcccCcCChHHhcCcCCCEEE--
Confidence            9999  56667888899999999999998 521100   3366778 9999999999999878888887766655555  


Q ss_pred             cCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCCh
Q 043839          322 QNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLP  368 (415)
Q Consensus       322 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp  368 (415)
                                  +++|...+.+|.. +.+++|+.|++.+|+.+...|
T Consensus       275 ------------Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          275 ------------VSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             ------------CCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             ------------CcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence                        4677444466654 889999999999998655444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.89  E-value=3.2e-22  Score=200.72  Aligned_cols=110  Identities=12%  Similarity=0.040  Sum_probs=64.0

Q ss_pred             CCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCccCCceEecCc------
Q 043839          110 DLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLFHLKYLKLIT------  182 (415)
Q Consensus       110 ~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~------  182 (415)
                      ++....++....++++.|.+.++..    ....+..|.++++|++|++++|.++.+ |..++++++|++|++++      
T Consensus         9 ~n~l~~ip~~~~~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l   84 (520)
T 2z7x_B            9 KNGLIHVPKDLSQKTTILNISQNYI----SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI   84 (520)
T ss_dssp             TSCCSSCCCSCCTTCSEEECCSSCC----CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEE
T ss_pred             CCCcccccccccccccEEECCCCcc----cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeec
Confidence            3333334433356666666666665    344445566666666666666666633 55666666666666666      


Q ss_pred             ccccccccCcEEEecCCCCCC-CCCCcccCccccceeccccCC
Q 043839          183 PLLKLMQKLMHLNFGSITMPS-PPNNYSSSLKDLIFISAVHPS  224 (415)
Q Consensus       183 ~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~  224 (415)
                      +.. .+++|++|++++|.+.. .+|..++.+++|++|++.++.
T Consensus        85 p~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~  126 (520)
T 2z7x_B           85 SCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH  126 (520)
T ss_dssp             ECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred             Ccc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence            112 55666666666555443 455666666666666666654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=1.4e-22  Score=212.74  Aligned_cols=269  Identities=17%  Similarity=0.189  Sum_probs=180.0

Q ss_pred             CCceeEEEEEeCCC-CCccCCCC--CCceeEEEeecCC-Ccccccc-chHHHhccC-------CcccEEEcCCcccccCc
Q 043839           99 LANVKRCFILKDLT-EFFPLEHS--DMYLQSFLNHSSE-SDHLAGI-DCENFCKKF-------KHLRVLNLGSAVLDLYP  166 (415)
Q Consensus        99 ~~~~r~l~l~~~~~-~~~~~~~~--~~~Lr~L~~~~~~-~~~~~~~-~~~~~~~~~-------~~L~~L~l~~~~~~~lp  166 (415)
                      ...++.+.+. .+. ...++..+  +++|+.|.+.++. .    .. ..|..+.++       ++|++|++++|.++.+|
T Consensus       490 L~~L~~L~Ls-~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l----sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip  564 (876)
T 4ecn_A          490 LKDLTDVELY-NCPNMTQLPDFLYDLPELQSLNIACNRGI----SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP  564 (876)
T ss_dssp             CTTCCEEEEE-SCTTCCSCCGGGGGCSSCCEEECTTCTTS----CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCC
T ss_pred             CCCCCEEECc-CCCCCccChHHHhCCCCCCEEECcCCCCc----ccccchHHHHhhhhcccccCCccEEEeeCCcCCccC
Confidence            4678899998 654 44466555  9999999999987 4    22 344445544       49999999999999999


Q ss_pred             c--cccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccc-cceeccccCC-CCCccccCCCCC
Q 043839          167 P--GLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKD-LIFISAVHPS-SCTPDILGRLPN  236 (415)
Q Consensus       167 ~--~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~l~~~~-~~~~~~l~~l~~  236 (415)
                      .  .++++++|++|++++      +.++++++|+.|++++|.+. .+|..+..+++ |++|++.++. ..+|..+..++.
T Consensus       565 ~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~  643 (876)
T 4ecn_A          565 ASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV  643 (876)
T ss_dssp             CHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCS
T ss_pred             ChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhcccc
Confidence            8  899999999999998      56778889999999966655 88888999998 9999999888 667766655543


Q ss_pred             --CCeEEEecccCcchh----------------------------cHHHhhh-ccCCCcEEEeecCccccccccc--cc-
Q 043839          237 --VQTLRISGDLSYHHS----------------------------GVSKSLC-ELHKLECLKLVNEGKMWQFSRM--IL-  282 (415)
Q Consensus       237 --L~~L~l~~~~~~~~~----------------------------~~~~~l~-~l~~L~~L~l~~~~~il~~l~L--lp-  282 (415)
                        |+.|++++|.  ..+                            .+|..+. .+++|+.|++++ |      ++  +| 
T Consensus       644 ~~L~~L~Ls~N~--l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~-N------~L~~ip~  714 (876)
T 4ecn_A          644 YVMGSVDFSYNK--IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN-N------LMTSIPE  714 (876)
T ss_dssp             SCEEEEECCSSC--TTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS-C------CCSCCCT
T ss_pred             CCCCEEECcCCc--CCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC-C------cCCccCh
Confidence              7777776662  222                            2222222 344444444444 2      12  44 


Q ss_pred             CCCCCC-------CCceEEEEEccccCCCCchhhc--CCCCCCeEeecc---------CCCCCcccEEEecc------CC
Q 043839          283 SEYKFP-------PTLTQLSLSNTKLMEDPMPTLE--KLPLLEVLKLKQ---------NSSFPLLKILHLKS------ML  338 (415)
Q Consensus       283 ~~~~lp-------~~L~~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~---------~~~~~~L~~L~l~~------~~  338 (415)
                      ++...+       ++|+.|++++|.++ .+|..+.  .+++|+.|++++         ...+++|+.|++++      |.
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~  793 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNR  793 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred             HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccc
Confidence            222210       26677777777665 5555555  667777777665         23455677777655      33


Q ss_pred             CccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          339 WLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       339 ~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      ....+|..++.+++|+.|++++|.. +.+|..+.  ++|+.|+|++|+
T Consensus       794 l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~  838 (876)
T 4ecn_A          794 ILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP  838 (876)
T ss_dssp             CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred             ccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence            3445666666677777777777766 56665543  567777777765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=4.8e-22  Score=205.94  Aligned_cols=274  Identities=17%  Similarity=0.082  Sum_probs=197.0

Q ss_pred             CCceeEEEEEeCCCCCccCCC-C--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcc-cccCccC
Q 043839           99 LANVKRCFILKDLTEFFPLEH-S--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPP-GLENLFH  174 (415)
Q Consensus        99 ~~~~r~l~l~~~~~~~~~~~~-~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~  174 (415)
                      +.+++++.+. ++....++.. +  +++|++|.+.++..    ....+..+.++++|++|++++|.++.+|. .++++++
T Consensus        24 ~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~   98 (680)
T 1ziw_A           24 PTNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGFNTI----SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN   98 (680)
T ss_dssp             CTTCSEEECC-SSCCCCCCGGGGGGGTTCSEEECCSSCC----CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCcEEECC-CCCCCCcCHHHHhCCCcCcEEECCCCcc----CccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence            4678888888 7666555543 3  78899999888876    45556778888999999999988887776 5888889


Q ss_pred             CceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCc-ccc--CCCCCCCeEEE
Q 043839          175 LKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTP-DIL--GRLPNVQTLRI  242 (415)
Q Consensus       175 L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l--~~l~~L~~L~l  242 (415)
                      |++|++++        ..++++++|++|++++|......|..++++++|++|++.++. ...+ ..+  ..+++|+.|++
T Consensus        99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L  178 (680)
T 1ziw_A           99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL  178 (680)
T ss_dssp             CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred             CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence            99999887        357788889999998777777777778888899999888887 4333 333  24678888888


Q ss_pred             ecccCcchhcHHHhhhccCC---------------------------CcEEEeecCccccccccc---cc-CCCCCC-CC
Q 043839          243 SGDLSYHHSGVSKSLCELHK---------------------------LECLKLVNEGKMWQFSRM---IL-SEYKFP-PT  290 (415)
Q Consensus       243 ~~~~~~~~~~~~~~l~~l~~---------------------------L~~L~l~~~~~il~~l~L---lp-~~~~lp-~~  290 (415)
                      ++|  ...+..+..+..+.+                           |+.|++++ +      ++   .| ++..++ ++
T Consensus       179 ~~n--~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~-n------~l~~~~~~~~~~l~~~~  249 (680)
T 1ziw_A          179 SSN--QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN-S------QLSTTSNTTFLGLKWTN  249 (680)
T ss_dssp             TTC--CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT-S------CCCEECTTTTGGGGGSC
T ss_pred             CCC--cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC-C------cccccChhHhhccCcCC
Confidence            887  343334444444444                           44444444 2      12   34 555551 23


Q ss_pred             ceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCcc-----ceEE----cCCCcc
Q 043839          291 LTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLE-----EWTM----GAGSMP  351 (415)
Q Consensus       291 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~-----~l~~----~~~~l~  351 (415)
                      |++|++++|.+.+..+..++.+++|++|++++          ...+++|++|++++|..-.     .+|.    .++.++
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~  329 (680)
T 1ziw_A          250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK  329 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred             CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence            88888888888766677788888888888876          4556788888888763221     2332    567888


Q ss_pred             CccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          352 KLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       352 ~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      +|+.|++++|...+..|..+..+++|++|++++|.
T Consensus       330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred             CCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence            88888888888776666778888888888888764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.88  E-value=1.1e-21  Score=194.29  Aligned_cols=96  Identities=23%  Similarity=0.223  Sum_probs=60.2

Q ss_pred             CCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc--------CCCCCcccEEEeccCCCccceEEcCCCccCccE
Q 043839          284 EYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ--------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLES  355 (415)
Q Consensus       284 ~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~--------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~  355 (415)
                      +..+ ++|+.|++++|.+.+.. . ++.+++|+.|++++        ...+++|++|++++| .+..++. ++.+++|+.
T Consensus       261 ~~~l-~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~  335 (466)
T 1o6v_A          261 LSGL-TKLTELKLGANQISNIS-P-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISP-VSSLTKLQR  335 (466)
T ss_dssp             GTTC-TTCSEEECCSSCCCCCG-G-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCE
T ss_pred             hhcC-CCCCEEECCCCccCccc-c-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCC-cCCCchh-hccCccCCE
Confidence            4455 66666666666654322 2 56666666666665        344567777777777 3443332 567777777


Q ss_pred             EEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          356 LILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       356 L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      |++++|...+ ++ .+..+++|+.|++++|+
T Consensus       336 L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          336 LFFYNNKVSD-VS-SLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             EECCSSCCCC-CG-GGTTCTTCCEEECCSSC
T ss_pred             eECCCCccCC-ch-hhccCCCCCEEeCCCCc
Confidence            7777776543 33 57777888888887765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.88  E-value=2.2e-22  Score=203.23  Aligned_cols=275  Identities=17%  Similarity=0.146  Sum_probs=201.0

Q ss_pred             CCceeEEEEEeCCCCCccC-CCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcc-cccCccC
Q 043839           99 LANVKRCFILKDLTEFFPL-EHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPP-GLENLFH  174 (415)
Q Consensus        99 ~~~~r~l~l~~~~~~~~~~-~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~  174 (415)
                      ...++++.+. ++....+. ..+  +++||+|.+.++..    ....+..|.++++|++|++++|.++.+|. .++++++
T Consensus        25 ~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   99 (549)
T 2z81_A           25 TAAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSSRI----NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS   99 (549)
T ss_dssp             CTTCCEEECC-SSCCCEECSSTTSSCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred             CCCccEEECc-CCccCccChhhhhcCCcccEEECCCCCc----CccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence            4578899988 77665453 334  89999999999887    55666778999999999999999996655 4899999


Q ss_pred             CceEecCc---------ccccccccCcEEEecCCCCCCCCC-CcccCccccceeccccCC--CCCccccCCCCCCCeEEE
Q 043839          175 LKYLKLIT---------PLLKLMQKLMHLNFGSITMPSPPN-NYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRI  242 (415)
Q Consensus       175 L~~L~l~~---------~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l  242 (415)
                      |++|++++         ..++++++|++|++++|.....+| ..++.+++|++|++.++.  ...|..++.+++|++|++
T Consensus       100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  179 (549)
T 2z81_A          100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL  179 (549)
T ss_dssp             CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence            99999988         346778999999999777566665 578999999999999988  557888999999999999


Q ss_pred             ecccCcchhcHHHhh-hccCCCcEEEeecCccc----------------cccccc------------cc-CC--------
Q 043839          243 SGDLSYHHSGVSKSL-CELHKLECLKLVNEGKM----------------WQFSRM------------IL-SE--------  284 (415)
Q Consensus       243 ~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~i----------------l~~l~L------------lp-~~--------  284 (415)
                      ..+   ....++..+ ..+++|+.|++++ +.+                ++.+.+            ++ .+        
T Consensus       180 ~~n---~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~  255 (549)
T 2z81_A          180 HLS---ESAFLLEIFADILSSVRYLELRD-TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE  255 (549)
T ss_dssp             ECS---BSTTHHHHHHHSTTTBSEEEEES-CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred             ccC---cccccchhhHhhcccccEEEccC-CccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence            988   334455544 4689999999987 321                000000            00 00        


Q ss_pred             ----------------------C-----------------------------CCCCCceEEEEEccccCCCCchhh-cCC
Q 043839          285 ----------------------Y-----------------------------KFPPTLTQLSLSNTKLMEDPMPTL-EKL  312 (415)
Q Consensus       285 ----------------------~-----------------------------~lp~~L~~L~l~~~~l~~~~~~~l-~~l  312 (415)
                                            .                             .. ++|+.|++++|.+. .+|..+ +.+
T Consensus       256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~-~~L~~L~l~~n~l~-~ip~~~~~~l  333 (549)
T 2z81_A          256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL-EKVKRITVENSKVF-LVPCSFSQHL  333 (549)
T ss_dssp             EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS-TTCCEEEEESSCCC-CCCHHHHHHC
T ss_pred             cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhc-ccceEEEeccCccc-cCCHHHHhcC
Confidence                                  0                             01 34555666665553 344444 568


Q ss_pred             CCCCeEeecc-------------CCCCCcccEEEeccCCCccceE---EcCCCccCccEEEEecCcccCCChhhhcCCCC
Q 043839          313 PLLEVLKLKQ-------------NSSFPLLKILHLKSMLWLEEWT---MGAGSMPKLESLILNPCAYLRKLPEELWCIKN  376 (415)
Q Consensus       313 ~~L~~L~l~~-------------~~~~~~L~~L~l~~~~~l~~l~---~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~  376 (415)
                      ++|++|++++             .+.+++|++|++++| .++.++   ..++.+++|+.|++++|... .+|..+..+++
T Consensus       334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~  411 (549)
T 2z81_A          334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK  411 (549)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTT
T ss_pred             ccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccc
Confidence            8888888876             245678888888888 555554   24678888888888888665 67877778888


Q ss_pred             CCeEEEecCC
Q 043839          377 LCKLELHWPQ  386 (415)
Q Consensus       377 L~~L~l~~c~  386 (415)
                      |++|++++|.
T Consensus       412 L~~L~Ls~N~  421 (549)
T 2z81_A          412 MRFLNLSSTG  421 (549)
T ss_dssp             CCEEECTTSC
T ss_pred             ccEEECCCCC
Confidence            8888888765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=2.7e-22  Score=189.31  Aligned_cols=215  Identities=17%  Similarity=0.147  Sum_probs=173.8

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc-------ccccccccCcE
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT-------PLLKLMQKLMH  193 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------~~i~~l~~L~~  193 (415)
                      .++++.|.+.++..    .. ++..+.++++|++|++++|.++.+|..++++++|++|++++       ..++++++|++
T Consensus        80 ~~~l~~L~L~~n~l----~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSVPL----PQ-FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE  154 (328)
T ss_dssp             STTCCEEEEESSCC----SS-CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred             ccceeEEEccCCCc----hh-cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence            46777777777766    22 23446668888888888888888888888888888888887       56778889999


Q ss_pred             EEecCCCCCCCCCCcccC---------ccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCC
Q 043839          194 LNFGSITMPSPPNNYSSS---------LKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKL  263 (415)
Q Consensus       194 L~l~~~~~~~~~p~~i~~---------l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L  263 (415)
                      |++++|...+.+|..++.         +++|++|++.++. ..+|..++.+++|++|++++|   ....+|..+..+++|
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N---~l~~l~~~l~~l~~L  231 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS---PLSALGPAIHHLPKL  231 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS---CCCCCCGGGGGCTTC
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC---CCCcCchhhccCCCC
Confidence            999877888888887765         9999999999998 888989999999999999998   334577789999999


Q ss_pred             cEEEeecCccccccccccc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccc
Q 043839          264 ECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEE  342 (415)
Q Consensus       264 ~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~  342 (415)
                      +.|++++ +.+...   +| ++..+ ++|++|++++|.+.+..|..++.+++              |++|++++|..++.
T Consensus       232 ~~L~Ls~-n~~~~~---~p~~~~~l-~~L~~L~L~~n~~~~~~p~~~~~l~~--------------L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          232 EELDLRG-CTALRN---YPPIFGGR-APLKRLILKDCSNLLTLPLDIHRLTQ--------------LEKLDLRGCVNLSR  292 (328)
T ss_dssp             CEEECTT-CTTCCB---CCCCTTCC-CCCCEEECTTCTTCCBCCTTGGGCTT--------------CCEEECTTCTTCCC
T ss_pred             CEEECcC-Ccchhh---hHHHhcCC-CCCCEEECCCCCchhhcchhhhcCCC--------------CCEEeCCCCCchhh
Confidence            9999998 421111   77 88899 99999999999888888877766555              45555588888899


Q ss_pred             eEEcCCCccCccEEEEecCc
Q 043839          343 WTMGAGSMPKLESLILNPCA  362 (415)
Q Consensus       343 l~~~~~~l~~L~~L~l~~c~  362 (415)
                      +|..++.+++|+.+.+..+.
T Consensus       293 iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          293 LPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             CCGGGGGSCTTCEEECCGGG
T ss_pred             ccHHHhhccCceEEeCCHHH
Confidence            99999999999999887654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=4.5e-22  Score=188.18  Aligned_cols=264  Identities=17%  Similarity=0.172  Sum_probs=151.7

Q ss_pred             eeEEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCccCCceEec
Q 043839          102 VKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLFHLKYLKL  180 (415)
Q Consensus       102 ~r~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l  180 (415)
                      .+.+.+. +.....++....++++.|.+.++..    ..+.+..+.++++|++|++++|.++ ..|..++++++|++|++
T Consensus        35 l~~l~~~-~~~l~~ip~~~~~~l~~L~l~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           35 LRVVQCS-DLGLKAVPKEISPDTTLLDLQNNDI----SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             TTEEECC-SSCCSSCCSCCCTTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             CCEEECC-CCCccccCCCCCCCCeEEECCCCcC----CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4455555 5554445554466778888777766    4444556777888888888888777 34666777777777777


Q ss_pred             Ccccccc-----cccCcEEEecCCCCCCCCCCcccCccccceeccccCC-C---CCccccCCCCCCCeEEEecccCcchh
Q 043839          181 ITPLLKL-----MQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-S---CTPDILGRLPNVQTLRISGDLSYHHS  251 (415)
Q Consensus       181 ~~~~i~~-----l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~---~~~~~l~~l~~L~~L~l~~~~~~~~~  251 (415)
                      ++..+..     .++|++|++++|.+....+..++.+++|++|++.++. .   ..+..++.+ +|+.|+++++.   ..
T Consensus       110 ~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~---l~  185 (332)
T 2ft3_A          110 SKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK---LT  185 (332)
T ss_dssp             CSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB---CS
T ss_pred             CCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC---CC
Confidence            7622111     1567777777444443333346667777777776665 1   344455555 67777776662   22


Q ss_pred             cHHHhhhccCCCcEEEeecCccccccccc--c-c-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc-----
Q 043839          252 GVSKSLCELHKLECLKLVNEGKMWQFSRM--I-L-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ-----  322 (415)
Q Consensus       252 ~~~~~l~~l~~L~~L~l~~~~~il~~l~L--l-p-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-----  322 (415)
                      .+|..+.  ++|+.|++++ +      ++  + | .+..+ ++|++|++++|.+.+..+..++.+++|+.|++++     
T Consensus       186 ~l~~~~~--~~L~~L~l~~-n------~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  255 (332)
T 2ft3_A          186 GIPKDLP--ETLNELHLDH-N------KIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR  255 (332)
T ss_dssp             SCCSSSC--SSCSCCBCCS-S------CCCCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB
T ss_pred             ccCcccc--CCCCEEECCC-C------cCCccCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee
Confidence            2333322  5666666666 3      22  2 2 55666 6677777777766555555666666666666655     


Q ss_pred             ----CCCCCcccEEEeccCCCccceEEc-CCC------ccCccEEEEecCccc--CCChhhhcCCCCCCeEEEecC
Q 043839          323 ----NSSFPLLKILHLKSMLWLEEWTMG-AGS------MPKLESLILNPCAYL--RKLPEELWCIKNLCKLELHWP  385 (415)
Q Consensus       323 ----~~~~~~L~~L~l~~~~~l~~l~~~-~~~------l~~L~~L~l~~c~~~--~~lp~~l~~l~~L~~L~l~~c  385 (415)
                          ...+++|++|++++| .++.++.. +..      .++|+.|++.+|+..  ...|..+..+++|+.++++++
T Consensus       256 lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          256 VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             cChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence                233455666666665 34444321 111      345666666666644  234455555666666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=8e-22  Score=208.96  Aligned_cols=144  Identities=19%  Similarity=0.135  Sum_probs=104.4

Q ss_pred             CCCceeEEEEEeCCCCCccC-CCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCcc
Q 043839           98 SLANVKRCFILKDLTEFFPL-EHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLF  173 (415)
Q Consensus        98 ~~~~~r~l~l~~~~~~~~~~-~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~  173 (415)
                      .+..++++.+. .+....+. ..+  +++||+|.+.++...   ..+.+..|.++++|++|++++|.+. ..|..+++++
T Consensus        22 lp~~l~~LdLs-~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~   97 (844)
T 3j0a_A           22 VLNTTERLLLS-FNYIRTVTASSFPFLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF   97 (844)
T ss_dssp             SCTTCCEEEEE-SCCCCEECSSSCSSCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred             CCCCcCEEECC-CCcCCccChhHCcccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence            35678888888 77665443 333  888899988887442   3444677888899999999988888 5578888888


Q ss_pred             CCceEecCc--------c--cccccccCcEEEecCCCCCCCCC-CcccCccccceeccccCC--CCCccccCCC--CCCC
Q 043839          174 HLKYLKLIT--------P--LLKLMQKLMHLNFGSITMPSPPN-NYSSSLKDLIFISAVHPS--SCTPDILGRL--PNVQ  238 (415)
Q Consensus       174 ~L~~L~l~~--------~--~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~--~~~~~~l~~l--~~L~  238 (415)
                      +|++|++++        .  .++++++|++|++++|.+....| ..++++++|++|++.++.  ...+..++.+  ++|+
T Consensus        98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~  177 (844)
T 3j0a_A           98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS  177 (844)
T ss_dssp             SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred             ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence            999998887        1  26778888999988776655443 468888888888888876  4444555544  5666


Q ss_pred             eEEEecc
Q 043839          239 TLRISGD  245 (415)
Q Consensus       239 ~L~l~~~  245 (415)
                      .|+++.|
T Consensus       178 ~L~L~~n  184 (844)
T 3j0a_A          178 FFSLAAN  184 (844)
T ss_dssp             CCEECCS
T ss_pred             eEECCCC
Confidence            6666665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=1.5e-21  Score=206.86  Aligned_cols=269  Identities=16%  Similarity=0.114  Sum_probs=203.0

Q ss_pred             CCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cC-cccccCccCCceEecCc-----
Q 043839          110 DLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LY-PPGLENLFHLKYLKLIT-----  182 (415)
Q Consensus       110 ~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l-p~~i~~l~~L~~L~l~~-----  182 (415)
                      ......+|. ..++++.|.+.++..    ..+.+..|.++++|++|++++|... .+ |..+.++++|++|++++     
T Consensus        13 ~~~L~~vP~-lp~~l~~LdLs~N~i----~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~   87 (844)
T 3j0a_A           13 FCNLTQVPQ-VLNTTERLLLSFNYI----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF   87 (844)
T ss_dssp             CCCSSCCCS-SCTTCCEEEEESCCC----CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred             CCCCCCCCC-CCCCcCEEECCCCcC----CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence            334444565 678999999999988    5556677999999999999999644 55 78899999999999998     


Q ss_pred             ---ccccccccCcEEEecCCCCCCCCCCc--ccCccccceeccccCC-CCC--ccccCCCCCCCeEEEecccCcchhcHH
Q 043839          183 ---PLLKLMQKLMHLNFGSITMPSPPNNY--SSSLKDLIFISAVHPS-SCT--PDILGRLPNVQTLRISGDLSYHHSGVS  254 (415)
Q Consensus       183 ---~~i~~l~~L~~L~l~~~~~~~~~p~~--i~~l~~L~~L~l~~~~-~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~  254 (415)
                         ..++++++|++|++++|.....+|..  ++.+++|++|+++++. ...  +..++++++|++|++++|  ...+..+
T Consensus        88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N--~i~~~~~  165 (844)
T 3j0a_A           88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN--QIFLVCE  165 (844)
T ss_dssp             ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS--CCCCCCS
T ss_pred             cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC--cCCeeCH
Confidence               56889999999999988777767765  8999999999999998 333  357899999999999998  3444444


Q ss_pred             Hhhhcc--CCCcEEEeecCccc-------------------cccccc--------cc-----------------------
Q 043839          255 KSLCEL--HKLECLKLVNEGKM-------------------WQFSRM--------IL-----------------------  282 (415)
Q Consensus       255 ~~l~~l--~~L~~L~l~~~~~i-------------------l~~l~L--------lp-----------------------  282 (415)
                      ..+..+  ++|+.|+++. +.+                   ++.|.+        .|                       
T Consensus       166 ~~l~~l~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~  244 (844)
T 3j0a_A          166 HELEPLQGKTLSFFSLAA-NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG  244 (844)
T ss_dssp             GGGHHHHHCSSCCCEECC-SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred             HHcccccCCccceEECCC-CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence            444444  5555555554 111                   011100        00                       


Q ss_pred             --------------CCCCC-CCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccC
Q 043839          283 --------------SEYKF-PPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSM  337 (415)
Q Consensus       283 --------------~~~~l-p~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~  337 (415)
                                    .+..+ +++|+.|++++|.+.+..+..++.+++|+.|++++          ...+++|++|++++|
T Consensus       245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N  324 (844)
T 3j0a_A          245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN  324 (844)
T ss_dssp             CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC
T ss_pred             ccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC
Confidence                          01111 25788888888888777777888899999999987          456788999999998


Q ss_pred             CCccce-EEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839          338 LWLEEW-TMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       338 ~~l~~l-~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~  387 (415)
                       .++.+ +..++.+++|+.|++++|......+..+..+++|+.|++++|.-
T Consensus       325 -~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l  374 (844)
T 3j0a_A          325 -LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL  374 (844)
T ss_dssp             -CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred             -CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence             44544 67788999999999999977654455688899999999998763

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.87  E-value=6.3e-22  Score=199.86  Aligned_cols=279  Identities=16%  Similarity=0.090  Sum_probs=181.2

Q ss_pred             CCCceeEEEEEeCCCCCccCC-CC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc--cCcccccCc
Q 043839           98 SLANVKRCFILKDLTEFFPLE-HS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD--LYPPGLENL  172 (415)
Q Consensus        98 ~~~~~r~l~l~~~~~~~~~~~-~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~lp~~i~~l  172 (415)
                      ....++.+.+. ++....++. .+  +++|++|.+.++..    ....+..+.++++|++|++++|.++  ..|..++++
T Consensus        48 ~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l  122 (549)
T 2z81_A           48 ACANLQVLILK-SSRINTIEGDAFYSLGSLEHLDLSDNHL----SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL  122 (549)
T ss_dssp             SCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTSCC----CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred             cCCcccEEECC-CCCcCccChhhccccccCCEEECCCCcc----CccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence            45678899988 777665553 34  89999999999987    5666777999999999999999988  457789999


Q ss_pred             cCCceEecCc---------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcccc-CCCCCCCeEE
Q 043839          173 FHLKYLKLIT---------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDIL-GRLPNVQTLR  241 (415)
Q Consensus       173 ~~L~~L~l~~---------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l-~~l~~L~~L~  241 (415)
                      ++|++|++++         ..++++++|++|++++|.+....|..++.+++|++|++.++. ..++..+ +.+++|+.|+
T Consensus       123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  202 (549)
T 2z81_A          123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE  202 (549)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEE
T ss_pred             CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEE
Confidence            9999999987         357788999999999787776677776665555555443332 1111110 1112222222


Q ss_pred             EecccC-------------------------c------------------------------------------------
Q 043839          242 ISGDLS-------------------------Y------------------------------------------------  248 (415)
Q Consensus       242 l~~~~~-------------------------~------------------------------------------------  248 (415)
                      +++|.-                         .                                                
T Consensus       203 L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~  282 (549)
T 2z81_A          203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK  282 (549)
T ss_dssp             EESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred             ccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence            211100                         0                                                


Q ss_pred             --------------------------------------chhcHHHhh-hccCCCcEEEeecCccc---------------
Q 043839          249 --------------------------------------HHSGVSKSL-CELHKLECLKLVNEGKM---------------  274 (415)
Q Consensus       249 --------------------------------------~~~~~~~~l-~~l~~L~~L~l~~~~~i---------------  274 (415)
                                                            ....+|..+ ..+++|+.|++++ +.+               
T Consensus       283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~l~  361 (549)
T 2z81_A          283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE-NLMVEEYLKNSACKGAWP  361 (549)
T ss_dssp             CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCS-SCCCHHHHHHHTCTTSST
T ss_pred             cccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccC-Cccccccccchhhhhccc
Confidence                                                  011123333 2456666666665 211               


Q ss_pred             -cccc-----cc--cc----CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc--------------------
Q 043839          275 -WQFS-----RM--IL----SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ--------------------  322 (415)
Q Consensus       275 -l~~l-----~L--lp----~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~--------------------  322 (415)
                       |+.|     ++  +|    .+..+ ++|++|++++|.++ .+|..++.+++|++|++++                    
T Consensus       362 ~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls  439 (549)
T 2z81_A          362 SLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVS  439 (549)
T ss_dssp             TCCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECC
T ss_pred             cCcEEEccCCcccccccchhhhhcC-CCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECC
Confidence             1111     11  11    24455 66666666666654 4555555566666666554                    


Q ss_pred             -------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          323 -------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       323 -------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                             ...+++|++|++++| .++.+|. .+.+++|+.|++++|...+..|..+..+++|+.|++++||
T Consensus       440 ~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          440 NNNLDSFSLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             SSCCSCCCCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             CCChhhhcccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence                   125677888888887 5667775 4678899999999988876666678889999999998776

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.87  E-value=3.3e-22  Score=204.39  Aligned_cols=247  Identities=13%  Similarity=0.044  Sum_probs=205.8

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEE
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHL  194 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L  194 (415)
                      +++++.|.+.++...    .+.  .+..+++|++|++++|.+..+| .+ .+++|++|++++      ..++.+++|++|
T Consensus       284 l~~L~~L~l~~~~~~----~l~--~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L  355 (606)
T 3vq2_A          284 LANVSAMSLAGVSIK----YLE--DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYL  355 (606)
T ss_dssp             GTTCSEEEEESCCCC----CCC--CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred             CCCCCEEEecCccch----hhh--hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchhhccCCCCCEE
Confidence            889999999988873    332  6788899999999999998888 45 899999999987      456688999999


Q ss_pred             EecCCCCCCC--CCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHH-HhhhccCCCcEEEeec
Q 043839          195 NFGSITMPSP--PNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVS-KSLCELHKLECLKLVN  270 (415)
Q Consensus       195 ~l~~~~~~~~--~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~  270 (415)
                      ++++|.+...  +|..++.+++|++|++.++. ..+|..+..+++|+.|++++|  ...+..+ ..+..+++|+.|++++
T Consensus       356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~  433 (606)
T 3vq2_A          356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS--TLKRVTEFSAFLSLEKLLYLDISY  433 (606)
T ss_dssp             ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTS--EEESTTTTTTTTTCTTCCEEECTT
T ss_pred             ECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCC--ccCCccChhhhhccccCCEEECcC
Confidence            9996665433  47778899999999999998 667788999999999999998  4444444 5788999999999998


Q ss_pred             Cccccccccc---cc-CCCCCCCCceEEEEEccccCCC-CchhhcCCCCCCeEeecc----------CCCCCcccEEEec
Q 043839          271 EGKMWQFSRM---IL-SEYKFPPTLTQLSLSNTKLMED-PMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLK  335 (415)
Q Consensus       271 ~~~il~~l~L---lp-~~~~lp~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~  335 (415)
                       +      ++   .| .+..+ ++|++|++++|.+.+. .+..++.+++|+.|++++          ...+++|++|+++
T Consensus       434 -n------~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  505 (606)
T 3vq2_A          434 -T------NTKIDFDGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS  505 (606)
T ss_dssp             -S------CCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             -C------CCCccchhhhcCC-CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence             5      33   56 78889 9999999999998763 677899999999999998          4567899999999


Q ss_pred             cCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCC-CCCeEEEecCC
Q 043839          336 SMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIK-NLCKLELHWPQ  386 (415)
Q Consensus       336 ~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~-~L~~L~l~~c~  386 (415)
                      +|...+..|..++.+++|+.|++++|... .+|..+..++ +|+.|+++++|
T Consensus       506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             SSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred             CCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence            99544445778999999999999999866 7898888887 59999998754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=9.7e-22  Score=185.72  Aligned_cols=240  Identities=15%  Similarity=0.095  Sum_probs=132.5

Q ss_pred             cCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCccCCceEecCcccccccccCcEE
Q 043839          116 PLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLFHLKYLKLITPLLKLMQKLMHL  194 (415)
Q Consensus       116 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~l~~L~~L  194 (415)
                      ++....++++.|.+.++..    ..+.+..+.++++|++|++++|.++.+ |..++++                ++|++|
T Consensus        46 lp~~~~~~l~~L~L~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l----------------~~L~~L  105 (330)
T 1xku_A           46 VPKDLPPDTALLDLQNNKI----TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL----------------VKLERL  105 (330)
T ss_dssp             CCCSCCTTCCEEECCSSCC----CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC----------------TTCCEE
T ss_pred             cCccCCCCCeEEECCCCcC----CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC----------------CCCCEE
Confidence            3333344555555555554    333333455555555555555555532 4444444                445555


Q ss_pred             EecCCCCCCCCCCcccCccccceeccccCC-CCC-ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCc
Q 043839          195 NFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCT-PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEG  272 (415)
Q Consensus       195 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  272 (415)
                      ++++|. ...+|..+.  ++|++|++.++. ..+ +..+..+++|+.|+++++.....+..+..+..+++|+.|++++ +
T Consensus       106 ~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n  181 (330)
T 1xku_A          106 YLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-T  181 (330)
T ss_dssp             ECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-S
T ss_pred             ECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC-C
Confidence            555333 234444443  566666666665 332 3345666666666666653111223445556666666666665 3


Q ss_pred             cccccccccc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCcc
Q 043839          273 KMWQFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLE  341 (415)
Q Consensus       273 ~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~  341 (415)
                      .+-+    +| .+  . ++|++|++++|.+++..+..++.+++|+.|++++          ...+++|++|++++| .++
T Consensus       182 ~l~~----l~~~~--~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~  253 (330)
T 1xku_A          182 NITT----IPQGL--P-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLV  253 (330)
T ss_dssp             CCCS----CCSSC--C-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCS
T ss_pred             cccc----CCccc--c-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCc
Confidence            1000    33 22  2 5666666666666555556666666666666665          234566777777777 566


Q ss_pred             ceEEcCCCccCccEEEEecCcccCCChhhhc------CCCCCCeEEEecCCh
Q 043839          342 EWTMGAGSMPKLESLILNPCAYLRKLPEELW------CIKNLCKLELHWPQP  387 (415)
Q Consensus       342 ~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~------~l~~L~~L~l~~c~~  387 (415)
                      .+|..+..+++|++|++++|+..+--+..+.      ..+.|+.|++.++|.
T Consensus       254 ~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence            7777777777788888877766532222222      236677777777764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.87  E-value=3.9e-21  Score=190.25  Aligned_cols=258  Identities=21%  Similarity=0.145  Sum_probs=160.1

Q ss_pred             CceeEEEEEeCCCCCccCCCC-CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceE
Q 043839          100 ANVKRCFILKDLTEFFPLEHS-DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYL  178 (415)
Q Consensus       100 ~~~r~l~l~~~~~~~~~~~~~-~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  178 (415)
                      ..++.+.+. +.....++... +++|++|.+.++...    .+.+  +.++++|++|++++|.+..++. ++++++|++|
T Consensus        46 ~~l~~L~l~-~~~i~~l~~~~~l~~L~~L~Ls~n~l~----~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L  117 (466)
T 1o6v_A           46 DQVTTLQAD-RLGIKSIDGVEYLNNLTQINFSNNQLT----DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL  117 (466)
T ss_dssp             HTCCEEECC-SSCCCCCTTGGGCTTCCEEECCSSCCC----CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             ccccEEecC-CCCCccCcchhhhcCCCEEECCCCccC----Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence            456677766 65555455433 777777777777652    2322  6777777777777777776655 6777777777


Q ss_pred             ecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceecc---------------------ccCC-CCCccc
Q 043839          179 KLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISA---------------------VHPS-SCTPDI  230 (415)
Q Consensus       179 ~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l---------------------~~~~-~~~~~~  230 (415)
                      ++++      +.++++++|++|++++|.+. .++ .++.+++|++|++                     .++. ..+ ..
T Consensus       118 ~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~  194 (466)
T 1o6v_A          118 TLFNNQITDIDPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SV  194 (466)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-GG
T ss_pred             ECCCCCCCCChHHcCCCCCCEEECCCCccC-CCh-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-hh
Confidence            7776      34666677777777644432 232 2444555555554                     4444 222 22


Q ss_pred             cCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchh
Q 043839          231 LGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPT  308 (415)
Q Consensus       231 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~  308 (415)
                      +..+++|+.|++++|  ...+..+  ++.+++|+.|++++ +      ++  ++.+..+ ++|++|++++|.+.+..+  
T Consensus       195 l~~l~~L~~L~l~~n--~l~~~~~--~~~l~~L~~L~l~~-n------~l~~~~~l~~l-~~L~~L~l~~n~l~~~~~--  260 (466)
T 1o6v_A          195 LAKLTNLESLIATNN--QISDITP--LGILTNLDELSLNG-N------QLKDIGTLASL-TNLTDLDLANNQISNLAP--  260 (466)
T ss_dssp             GGGCTTCSEEECCSS--CCCCCGG--GGGCTTCCEEECCS-S------CCCCCGGGGGC-TTCSEEECCSSCCCCCGG--
T ss_pred             hccCCCCCEEEecCC--ccccccc--ccccCCCCEEECCC-C------CcccchhhhcC-CCCCEEECCCCccccchh--
Confidence            444444444444444  1221111  34445555555554 2      11  3455567 788888888887754332  


Q ss_pred             hcCCCCCCeEeecc--------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeE
Q 043839          309 LEKLPLLEVLKLKQ--------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKL  380 (415)
Q Consensus       309 l~~l~~L~~L~l~~--------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L  380 (415)
                      ++.+++|+.|++++        ...+++|++|++++| .++.++. ++.+++|+.|++++|...+..|  +..+++|+.|
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  336 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL  336 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred             hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence            77788888888876        345678888888887 4555543 6788888899998887765433  6778899999


Q ss_pred             EEecCC
Q 043839          381 ELHWPQ  386 (415)
Q Consensus       381 ~l~~c~  386 (415)
                      ++++|+
T Consensus       337 ~l~~n~  342 (466)
T 1o6v_A          337 FFYNNK  342 (466)
T ss_dssp             ECCSSC
T ss_pred             ECCCCc
Confidence            998876

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.87  E-value=2.2e-21  Score=196.64  Aligned_cols=116  Identities=14%  Similarity=0.000  Sum_probs=76.2

Q ss_pred             eEEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCccccc-CcccccCccCCceEecC
Q 043839          103 KRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDL-YPPGLENLFHLKYLKLI  181 (415)
Q Consensus       103 r~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~  181 (415)
                      +.+.+. +.....+|....++++.|.+.++..    ..+.+..|.++++|++|++++|.++. .|..+.++++|++|+++
T Consensus        34 ~~l~ls-~~~L~~ip~~~~~~L~~L~Ls~N~i----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           34 SMVDYS-NRNLTHVPKDLPPRTKALSLSQNSI----SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS  108 (562)
T ss_dssp             CEEECT-TSCCCSCCTTSCTTCCEEECCSSCC----CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cEEEcC-CCCCccCCCCCCCCcCEEECCCCCc----cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence            555555 5555545554466777777777776    44455667777777777777777773 35667777777777777


Q ss_pred             c------ccccccccCcEEEecCCCCCC-CCCCcccCccccceeccccCC
Q 043839          182 T------PLLKLMQKLMHLNFGSITMPS-PPNNYSSSLKDLIFISAVHPS  224 (415)
Q Consensus       182 ~------~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~  224 (415)
                      +      +.. .+++|++|++++|.+.. .+|..++++++|++|++.++.
T Consensus       109 ~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          109 HNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             TSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             CCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence            7      222 56777777777555543 345667777777777777765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.86  E-value=6.7e-21  Score=179.91  Aligned_cols=224  Identities=19%  Similarity=0.144  Sum_probs=177.0

Q ss_pred             CcccEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccc
Q 043839          150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAV  221 (415)
Q Consensus       150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~  221 (415)
                      .++++++++++.++.+|..+.  ++|++|++++        ..++++++|++|++++|.+....|..++.+++|++|++.
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            367777777777777776553  5677777776        356778888999998777776678899999999999999


Q ss_pred             cCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCCCceEEEEEcc
Q 043839          222 HPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNT  299 (415)
Q Consensus       222 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~  299 (415)
                      ++. ..+|..+.  ++|++|+++++  ......+..+..+++|+.|+++. +.+-. ....+ .+..+ ++|++|++++|
T Consensus       109 ~n~l~~l~~~~~--~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~-n~l~~-~~~~~~~~~~l-~~L~~L~l~~n  181 (330)
T 1xku_A          109 KNQLKELPEKMP--KTLQELRVHEN--EITKVRKSVFNGLNQMIVVELGT-NPLKS-SGIENGAFQGM-KKLSYIRIADT  181 (330)
T ss_dssp             SSCCSBCCSSCC--TTCCEEECCSS--CCCBBCHHHHTTCTTCCEEECCS-SCCCG-GGBCTTGGGGC-TTCCEEECCSS
T ss_pred             CCcCCccChhhc--ccccEEECCCC--cccccCHhHhcCCccccEEECCC-CcCCc-cCcChhhccCC-CCcCEEECCCC
Confidence            998 77776654  89999999998  45566667789999999999998 42100 00034 67788 99999999999


Q ss_pred             ccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEE-cCCCccCccEEEEecCcccCCCh
Q 043839          300 KLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTM-GAGSMPKLESLILNPCAYLRKLP  368 (415)
Q Consensus       300 ~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~~~~lp  368 (415)
                      .++. ++..+.  ++|+.|++++          ...+++|++|++++| .++.++. .++.+++|+.|++++|... .+|
T Consensus       182 ~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp  256 (330)
T 1xku_A          182 NITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLV-KVP  256 (330)
T ss_dssp             CCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCS-SCC
T ss_pred             cccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcCc-cCC
Confidence            9864 444433  8999999987          456789999999999 5666654 6889999999999999776 799


Q ss_pred             hhhcCCCCCCeEEEecCCh
Q 043839          369 EELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       369 ~~l~~l~~L~~L~l~~c~~  387 (415)
                      .++..+++|++|++++|+-
T Consensus       257 ~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          257 GGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             TTTTTCSSCCEEECCSSCC
T ss_pred             hhhccCCCcCEEECCCCcC
Confidence            9999999999999998763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.86  E-value=9.1e-21  Score=196.35  Aligned_cols=266  Identities=20%  Similarity=0.156  Sum_probs=202.4

Q ss_pred             CCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCccCCceEecCc-------
Q 043839          111 LTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLFHLKYLKLIT-------  182 (415)
Q Consensus       111 ~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~-------  182 (415)
                      .....+|....+++++|.+.++..    ..+.+..|.++++|++|++++|.++ ..|..++++++|++|++++       
T Consensus        14 ~~L~~ip~~~~~~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~   89 (680)
T 1ziw_A           14 LKLTQVPDDLPTNITVLNLTHNQL----RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS   89 (680)
T ss_dssp             SCCSSCCSCSCTTCSEEECCSSCC----CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC
T ss_pred             CCccccccccCCCCcEEECCCCCC----CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccC
Confidence            334445554478999999999987    5566677999999999999999998 5577789999999999998       


Q ss_pred             -ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhh-
Q 043839          183 -PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLC-  258 (415)
Q Consensus       183 -~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-  258 (415)
                       ..++++++|++|++++|.+....|..++.+++|++|++.++.  ...+..++.+++|++|++++|  ...+..+..+. 
T Consensus        90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~  167 (680)
T 1ziw_A           90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN--KIQALKSEELDI  167 (680)
T ss_dssp             TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS--CCCCBCHHHHGG
T ss_pred             hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC--cccccCHHHhhc
Confidence             358899999999999777765556789999999999999998  555677899999999999998  45444455554 


Q ss_pred             -ccCCCcEEEeecCccccccccccc-CCCCC--------------------------CCCceEEEEEccccCCCCchhhc
Q 043839          259 -ELHKLECLKLVNEGKMWQFSRMIL-SEYKF--------------------------PPTLTQLSLSNTKLMEDPMPTLE  310 (415)
Q Consensus       259 -~l~~L~~L~l~~~~~il~~l~Llp-~~~~l--------------------------p~~L~~L~l~~~~l~~~~~~~l~  310 (415)
                       .+++|+.|++++ +.+-.   +.| .+..+                          .++|+.|++++|.+.+..+..++
T Consensus       168 ~~~~~L~~L~L~~-n~l~~---~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~  243 (680)
T 1ziw_A          168 FANSSLKKLELSS-NQIKE---FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL  243 (680)
T ss_dssp             GTTCEESEEECTT-CCCCC---BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred             cccccccEEECCC-Ccccc---cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence             458999999988 42100   011 22222                          05678888888887777777777


Q ss_pred             CCCC--CCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccC-----CChh----
Q 043839          311 KLPL--LEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLR-----KLPE----  369 (415)
Q Consensus       311 ~l~~--L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~-----~lp~----  369 (415)
                      .++.  |+.|++++          ...+++|++|++++|...+..|..++.+++|+.|++++|...+     .+|.    
T Consensus       244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~  323 (680)
T 1ziw_A          244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF  323 (680)
T ss_dssp             GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred             ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence            7754  99999887          3456889999999884333445678889999999998875433     3443    


Q ss_pred             hhcCCCCCCeEEEecCC
Q 043839          370 ELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       370 ~l~~l~~L~~L~l~~c~  386 (415)
                      .+..+++|++|++++|.
T Consensus       324 ~~~~l~~L~~L~l~~n~  340 (680)
T 1ziw_A          324 SFQWLKCLEHLNMEDND  340 (680)
T ss_dssp             TTTTCTTCCEEECCSCC
T ss_pred             hcccCCCCCEEECCCCc
Confidence            57788999999998875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=5.6e-21  Score=194.90  Aligned_cols=252  Identities=15%  Similarity=0.078  Sum_probs=205.8

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCccCCceEecCc--------ccccccccC
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLFHLKYLKLIT--------PLLKLMQKL  191 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~--------~~i~~l~~L  191 (415)
                      .++++.+.+.++..    ..+++..+.++++|++|++++|.++.+ |..++.+++|++|++++        ..++++++|
T Consensus        50 l~~l~~l~l~~~~l----~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           50 LNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             GCCCSEEEESSCEE----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCceEEEeeCCCC----CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence            78999999998877    567778899999999999999999954 45899999999999998        346889999


Q ss_pred             cEEEecCCCCCCCCCCc-ccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEe
Q 043839          192 MHLNFGSITMPSPPNNY-SSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKL  268 (415)
Q Consensus       192 ~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  268 (415)
                      ++|++++|.+. .+|.. ++.+++|++|+++++.  ...|..++.+++|+.|++++|.  ... +  .+..+++|+.|++
T Consensus       126 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~-~--~~~~l~~L~~L~l  199 (597)
T 3oja_B          126 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTH-V--DLSLIPSLFHANV  199 (597)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSB-C--CGGGCTTCSEEEC
T ss_pred             CEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCC-c--Chhhhhhhhhhhc
Confidence            99999966555 55555 6999999999999998  4455579999999999999983  332 2  3667899999999


Q ss_pred             ecCccc--------cccccc----cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCC
Q 043839          269 VNEGKM--------WQFSRM----IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSS  325 (415)
Q Consensus       269 ~~~~~i--------l~~l~L----lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~  325 (415)
                      ++ +.+        ++.|.+    +. .....|++|+.|++++|.+++  +..++.+++|+.|++++          ...
T Consensus       200 ~~-n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  276 (597)
T 3oja_B          200 SY-NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK  276 (597)
T ss_dssp             CS-SCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             cc-CccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence            88 422        222211    11 111223789999999998864  47889999999999998          456


Q ss_pred             CCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839          326 FPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       326 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~  387 (415)
                      +++|+.|++++| .++.+|...+.+++|+.|++++|... .+|..+..+++|+.|++++|+-
T Consensus       277 l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l  336 (597)
T 3oja_B          277 MQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI  336 (597)
T ss_dssp             CSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred             ccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCC
Confidence            789999999998 78889988899999999999999877 7898899999999999999873

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.85  E-value=4.2e-20  Score=182.11  Aligned_cols=215  Identities=17%  Similarity=0.090  Sum_probs=121.3

Q ss_pred             hccCCcccEEEcCCcccccCcccccCccCCceEecCc-----ccccccccCcEEEecCCCCCCCCCCcccCccccceecc
Q 043839          146 CKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT-----PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISA  220 (415)
Q Consensus       146 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-----~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l  220 (415)
                      +.++++|++|++++|.++.+|  ++.+++|++|++++     -.++++++|++|++++|...+.+  .++.+++|++|++
T Consensus       102 ~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  177 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC  177 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred             cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence            444444444444444444433  44444444444444     22344445555555533333333  2445555555555


Q ss_pred             ccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEE
Q 043839          221 VHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLS  297 (415)
Q Consensus       221 ~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~  297 (415)
                      .++. ..++  ++.+++|+.|++++|.  ..+ +  .++.+++|+.|++++ +      ++  +| +..+ ++|+.|+++
T Consensus       178 s~n~l~~l~--l~~l~~L~~L~l~~N~--l~~-~--~l~~l~~L~~L~Ls~-N------~l~~ip-~~~l-~~L~~L~l~  241 (457)
T 3bz5_A          178 SFNKITELD--VSQNKLLNRLNCDTNN--ITK-L--DLNQNIQLTFLDCSS-N------KLTEID-VTPL-TQLTYFDCS  241 (457)
T ss_dssp             CSSCCCCCC--CTTCTTCCEEECCSSC--CSC-C--CCTTCTTCSEEECCS-S------CCSCCC-CTTC-TTCSEEECC
T ss_pred             CCCccceec--cccCCCCCEEECcCCc--CCe-e--ccccCCCCCEEECcC-C------cccccC-cccc-CCCCEEEee
Confidence            5555 3333  4555556666655552  221 1  255556666666665 3      22  44 5566 778888888


Q ss_pred             ccccCCCCchhhcCCCCCCeE----------eecc--------CCCCCcccEEEeccCCCccceEE--------cCCCcc
Q 043839          298 NTKLMEDPMPTLEKLPLLEVL----------KLKQ--------NSSFPLLKILHLKSMLWLEEWTM--------GAGSMP  351 (415)
Q Consensus       298 ~~~l~~~~~~~l~~l~~L~~L----------~l~~--------~~~~~~L~~L~l~~~~~l~~l~~--------~~~~l~  351 (415)
                      +|.+++..+   +.+++|+.|          ++++        .+.+++|+.|++++|..++.+|.        .+..++
T Consensus       242 ~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~  318 (457)
T 3bz5_A          242 VNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNP  318 (457)
T ss_dssp             SSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred             CCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcc
Confidence            877765433   334444444          3332        34557888888888877776664        245667


Q ss_pred             CccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          352 KLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       352 ~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      +|+.|++++|...+ ++  +.++++|+.|+++++.
T Consensus       319 ~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          319 KLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAH  350 (457)
T ss_dssp             TCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred             cCCEEECCCCcccc-cc--cccCCcCcEEECCCCC
Confidence            88888888887765 43  7788889999888755

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.85  E-value=1.5e-20  Score=190.53  Aligned_cols=278  Identities=17%  Similarity=0.077  Sum_probs=175.2

Q ss_pred             CCCceeEEEEEeCCCCCccCC-CC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCcc
Q 043839           98 SLANVKRCFILKDLTEFFPLE-HS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLF  173 (415)
Q Consensus        98 ~~~~~r~l~l~~~~~~~~~~~-~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~  173 (415)
                      .+..++++.+. ++....+.. .+  +++|++|.+.++..    ..+.+..|.++++|++|++++|.++.+ |..+++++
T Consensus        26 l~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (570)
T 2z63_A           26 LPFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS  100 (570)
T ss_dssp             SCSSCCEEECC-SCCCCEECTTTTTTCSSCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred             ccccccEEEcc-CCccCccChhHhhCCCCceEEECCCCcC----CccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence            35568888888 776654543 23  88899999988876    455566788899999999999988844 46788889


Q ss_pred             CCceEecCc--------ccccccccCcEEEecCCCCCC-CCCCcccCccccceeccccCC-C-CCccccCCCCCC----C
Q 043839          174 HLKYLKLIT--------PLLKLMQKLMHLNFGSITMPS-PPNNYSSSLKDLIFISAVHPS-S-CTPDILGRLPNV----Q  238 (415)
Q Consensus       174 ~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L----~  238 (415)
                      +|++|++++        ..++++++|++|++++|.+.. .+|..++++++|++|++.++. . ..+..++.+++|    +
T Consensus       101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~  180 (570)
T 2z63_A          101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL  180 (570)
T ss_dssp             TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred             ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence            999999887        247788899999998666654 578888889999999998887 3 334556666666    6


Q ss_pred             eEEEecccCcchhc------------------------HHHhhhccCCCcEEEeec---C--ccc-------cc------
Q 043839          239 TLRISGDLSYHHSG------------------------VSKSLCELHKLECLKLVN---E--GKM-------WQ------  276 (415)
Q Consensus       239 ~L~l~~~~~~~~~~------------------------~~~~l~~l~~L~~L~l~~---~--~~i-------l~------  276 (415)
                      .|+++++.  ....                        ++..+..+++++...+..   .  +.+       ++      
T Consensus       181 ~L~l~~n~--l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~  258 (570)
T 2z63_A          181 SLDLSLNP--MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT  258 (570)
T ss_dssp             EEECTTCC--CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred             hcccCCCC--ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence            66666652  1111                        222222222222221111   0  000       00      


Q ss_pred             --cc------cc---cc-CCCCCCCCceEEEEEccccCCCCchhhc--------------------CCCCCCeEeecc--
Q 043839          277 --FS------RM---IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLE--------------------KLPLLEVLKLKQ--  322 (415)
Q Consensus       277 --~l------~L---lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~--------------------~l~~L~~L~l~~--  322 (415)
                        .+      .+   .| ++..+ ++|+.|++++|.+. .++..+.                    .+++|+.|++.+  
T Consensus       259 l~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~  336 (570)
T 2z63_A          259 IEEFRLAYLDYYLDDIIDLFNCL-TNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK  336 (570)
T ss_dssp             EEEEEEEETTEEESCSTTTTGGG-TTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCB
T ss_pred             hhhhhhhcchhhhhhchhhhcCc-CcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCc
Confidence              00      00   23 34445 55666666555543 3343343                    445555555544  


Q ss_pred             ------CCCCCcccEEEeccCCCccce---EEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          323 ------NSSFPLLKILHLKSMLWLEEW---TMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       323 ------~~~~~~L~~L~l~~~~~l~~l---~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                            ...+++|++|++++| .++.+   +..+..+++|+.|++++|...+ +|..+..+++|++|++++|.
T Consensus       337 ~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~  407 (570)
T 2z63_A          337 GGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN  407 (570)
T ss_dssp             SCCBCCCCBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSE
T ss_pred             cccccccccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCc
Confidence                  245677777777777 34433   4556778888888888887653 45457778888888888764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.85  E-value=7.2e-21  Score=181.45  Aligned_cols=252  Identities=16%  Similarity=0.069  Sum_probs=164.8

Q ss_pred             CCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCccCCceEecCc------
Q 043839          110 DLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLFHLKYLKLIT------  182 (415)
Q Consensus       110 ~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~------  182 (415)
                      +.....+|....+++++|.+.++..    ..+.+..+.++++|++|++++|.++.+ |..+.++++|++|++++      
T Consensus        40 ~~~l~~iP~~~~~~L~~L~l~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  115 (353)
T 2z80_A           40 SGSLNSIPSGLTEAVKSLDLSNNRI----TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL  115 (353)
T ss_dssp             STTCSSCCTTCCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred             CCCcccccccccccCcEEECCCCcC----cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence            4444456655577899999988887    455555788899999999999988844 56688888888888877      


Q ss_pred             --ccccccccCcEEEecCCCCCCCCCC--cccCccccceeccccCC--CCC-ccccCCCCCCCeEEEecccCcchhcHHH
Q 043839          183 --PLLKLMQKLMHLNFGSITMPSPPNN--YSSSLKDLIFISAVHPS--SCT-PDILGRLPNVQTLRISGDLSYHHSGVSK  255 (415)
Q Consensus       183 --~~i~~l~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~l~~~~--~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~  255 (415)
                        ..++++++|++|++++|.+. .+|.  .++.+++|++|++.++.  ..+ +..++.+++|++|++++|  ...+..+.
T Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~  192 (353)
T 2z80_A          116 SSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS--DLQSYEPK  192 (353)
T ss_dssp             CHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET--TCCEECTT
T ss_pred             CHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC--CcCccCHH
Confidence              22667778888888755443 4554  57777888888887774  333 455777788888888777  34455566


Q ss_pred             hhhccCCCcEEEeecCccccccccccc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEE
Q 043839          256 SLCELHKLECLKLVNEGKMWQFSRMIL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILH  333 (415)
Q Consensus       256 ~l~~l~~L~~L~l~~~~~il~~l~Llp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~  333 (415)
                      .+..+++|+.|++++ +.+-.    +|  .+..+ ++|+.|++++|.+++..+..+...           ...+.++.++
T Consensus       193 ~l~~l~~L~~L~l~~-n~l~~----~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~-----------~~~~~l~~l~  255 (353)
T 2z80_A          193 SLKSIQNVSHLILHM-KQHIL----LLEIFVDVT-SSVECLELRDTDLDTFHFSELSTG-----------ETNSLIKKFT  255 (353)
T ss_dssp             TTTTCSEEEEEEEEC-SCSTT----HHHHHHHHT-TTEEEEEEESCBCTTCCCC-----------------CCCCCCEEE
T ss_pred             HHhccccCCeecCCC-Ccccc----chhhhhhhc-ccccEEECCCCccccccccccccc-----------cccchhhccc
Confidence            777777777777776 31100    33  23345 777777777777655433322211           1223344455


Q ss_pred             eccCC----CccceEEcCCCccCccEEEEecCcccCCChhhh-cCCCCCCeEEEecCC
Q 043839          334 LKSML----WLEEWTMGAGSMPKLESLILNPCAYLRKLPEEL-WCIKNLCKLELHWPQ  386 (415)
Q Consensus       334 l~~~~----~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l-~~l~~L~~L~l~~c~  386 (415)
                      +.++.    .+..+|..++.+++|+.|++++|... .+|.++ ..+++|++|++++++
T Consensus       256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence            55442    12245556677888888888888665 677664 778888888888765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.84  E-value=1.3e-20  Score=178.06  Aligned_cols=244  Identities=17%  Similarity=0.140  Sum_probs=192.9

Q ss_pred             ceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCccCCceEecCc--------ccccccccCcE
Q 043839          123 YLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLFHLKYLKLIT--------PLLKLMQKLMH  193 (415)
Q Consensus       123 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~--------~~i~~l~~L~~  193 (415)
                      +++.+.+.++...    .++. .+  .++|++|++++|.++.+ |..+.++++|++|++++        ..++++++|++
T Consensus        34 ~l~~l~~~~~~l~----~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  106 (332)
T 2ft3_A           34 HLRVVQCSDLGLK----AVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK  106 (332)
T ss_dssp             ETTEEECCSSCCS----SCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred             cCCEEECCCCCcc----ccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence            6888888877652    2222 12  36899999999999955 56899999999999998        46788999999


Q ss_pred             EEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecC
Q 043839          194 LNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNE  271 (415)
Q Consensus       194 L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  271 (415)
                      |++++|. ...+|..+.  ++|++|++.++. ..++. .++.+++|+.|+++++.....+..+..+..+ +|+.|++++ 
T Consensus       107 L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~-  181 (332)
T 2ft3_A          107 LYISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE-  181 (332)
T ss_dssp             EECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS-
T ss_pred             EECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC-
Confidence            9999554 447787665  899999999998 55554 5899999999999998421123455666666 899999988 


Q ss_pred             ccccccccc--cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCC
Q 043839          272 GKMWQFSRM--IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSML  338 (415)
Q Consensus       272 ~~il~~l~L--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~  338 (415)
                      +      ++  +| .+  . ++|++|++++|.+.+..+..++.+++|+.|++++          ...+++|++|++++| 
T Consensus       182 n------~l~~l~~~~--~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-  251 (332)
T 2ft3_A          182 A------KLTGIPKDL--P-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-  251 (332)
T ss_dssp             S------BCSSCCSSS--C-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-
T ss_pred             C------CCCccCccc--c-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-
Confidence            4      22  55 32  2 7899999999999877778899999999999987          345789999999999 


Q ss_pred             CccceEEcCCCccCccEEEEecCcccCCChhhhcC------CCCCCeEEEecCChh
Q 043839          339 WLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWC------IKNLCKLELHWPQPH  388 (415)
Q Consensus       339 ~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~------l~~L~~L~l~~c~~~  388 (415)
                      .++.+|..++.+++|+.|++++|+....-+..+..      .+.|+.|++.++|..
T Consensus       252 ~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          252 KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            77899988999999999999999876433343433      477999999999853

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=6.9e-21  Score=181.59  Aligned_cols=212  Identities=16%  Similarity=0.169  Sum_probs=115.9

Q ss_pred             cccEEEcCCcccccCcc-cccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCc
Q 043839          151 HLRVLNLGSAVLDLYPP-GLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTP  228 (415)
Q Consensus       151 ~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~  228 (415)
                      +|++|++++|.++.+|. .+.++++|++|++++                |.+....|..++.+++|++|++.++. ..++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~----------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  116 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTS----------------NGINTIEEDSFSSLGSLEHLDLSYNYLSNLS  116 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTT----------------SCCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCC----------------CccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence            55666666666554433 445555555555544                33333333344555555555555544 3333


Q ss_pred             cc-cCCCCCCCeEEEecccCcchhcHHH--hhhccCCCcEEEeecCccccccccccc-CCCCCCCCceEEEEEccccCCC
Q 043839          229 DI-LGRLPNVQTLRISGDLSYHHSGVSK--SLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLMED  304 (415)
Q Consensus       229 ~~-l~~l~~L~~L~l~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~  304 (415)
                      .. ++.+++|++|++++|   ....++.  .+..+++|+.|++++ +..+..  +.| .+..+ ++|++|++++|.+.+.
T Consensus       117 ~~~~~~l~~L~~L~L~~n---~l~~l~~~~~~~~l~~L~~L~l~~-n~~~~~--~~~~~~~~l-~~L~~L~l~~n~l~~~  189 (353)
T 2z80_A          117 SSWFKPLSSLTFLNLLGN---PYKTLGETSLFSHLTKLQILRVGN-MDTFTK--IQRKDFAGL-TFLEELEIDASDLQSY  189 (353)
T ss_dssp             HHHHTTCTTCSEEECTTC---CCSSSCSSCSCTTCTTCCEEEEEE-SSSCCE--ECTTTTTTC-CEEEEEEEEETTCCEE
T ss_pred             HhHhCCCccCCEEECCCC---CCcccCchhhhccCCCCcEEECCC-Cccccc--cCHHHccCC-CCCCEEECCCCCcCcc
Confidence            33 445555555555554   1122222  344455555555544 200000  012 44555 5666666666655554


Q ss_pred             CchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEE----cCCCccCccEEEEecCcccC----C
Q 043839          305 PMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTM----GAGSMPKLESLILNPCAYLR----K  366 (415)
Q Consensus       305 ~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~----~~~~l~~L~~L~l~~c~~~~----~  366 (415)
                      .+..++.+++|++|++++          ...+++|++|++++| .++.++.    .....+.++.++++++...+    .
T Consensus       190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~  268 (353)
T 2z80_A          190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ  268 (353)
T ss_dssp             CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred             CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchhh
Confidence            555556666666666654          123567777888887 4444331    13456788899999887654    4


Q ss_pred             ChhhhcCCCCCCeEEEecCC
Q 043839          367 LPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       367 lp~~l~~l~~L~~L~l~~c~  386 (415)
                      +|..+..+++|+.|++++|.
T Consensus       269 l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          269 VMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             HHHHHHTCTTCCEEECCSSC
T ss_pred             hHHHHhcccCCCEEECCCCC
Confidence            78889999999999999875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.84  E-value=5.5e-20  Score=181.26  Aligned_cols=254  Identities=19%  Similarity=0.038  Sum_probs=198.1

Q ss_pred             CCceeEEEEEeCCCCCccCCCC-CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCce
Q 043839           99 LANVKRCFILKDLTEFFPLEHS-DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKY  177 (415)
Q Consensus        99 ~~~~r~l~l~~~~~~~~~~~~~-~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~  177 (415)
                      ...++.+.+. ++....++... +++|++|.+.++....    +   .+..+++|++|++++|.++.+|  ++++++|++
T Consensus        41 l~~L~~L~Ls-~n~l~~~~~l~~l~~L~~L~Ls~n~l~~----~---~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~  110 (457)
T 3bz5_A           41 LATLTSLDCH-NSSITDMTGIEKLTGLTKLICTSNNITT----L---DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTY  110 (457)
T ss_dssp             HTTCCEEECC-SSCCCCCTTGGGCTTCSEEECCSSCCSC----C---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred             cCCCCEEEcc-CCCcccChhhcccCCCCEEEccCCcCCe----E---ccccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence            5678888888 77666565333 8999999999998743    2   2788999999999999998775  889999999


Q ss_pred             EecCc-----ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcch
Q 043839          178 LKLIT-----PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHH  250 (415)
Q Consensus       178 L~l~~-----~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~  250 (415)
                      |++++     -.++++++|++|++++|.+.. ++  ++.+++|++|++.++.  +.+  .++.+++|+.|++++|.  . 
T Consensus       111 L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~--l-  182 (457)
T 3bz5_A          111 LNCDTNKLTKLDVSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK--I-  182 (457)
T ss_dssp             EECCSSCCSCCCCTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC--C-
T ss_pred             EECCCCcCCeecCCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc--c-
Confidence            99998     336788999999999666544 43  7889999999999986  444  47889999999999983  3 


Q ss_pred             hcHHHhhhccCCCcEEEeecCccccccccccc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc------
Q 043839          251 SGVSKSLCELHKLECLKLVNEGKMWQFSRMIL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ------  322 (415)
Q Consensus       251 ~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~------  322 (415)
                      ..++  +..+++|+.|++++ +      + +.  .+..+ ++|+.|++++|.+++ +|  ++.+++|+.|++++      
T Consensus       183 ~~l~--l~~l~~L~~L~l~~-N------~-l~~~~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          183 TELD--VSQNKLLNRLNCDT-N------N-ITKLDLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             CCCC--CTTCTTCCEEECCS-S------C-CSCCCCTTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred             ceec--cccCCCCCEEECcC-C------c-CCeeccccC-CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence            3344  78889999999988 4      2 22  46778 999999999999876 44  88999999999998      


Q ss_pred             -CCCCCcc----------cEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhh--------hcCCCCCCeEEEe
Q 043839          323 -NSSFPLL----------KILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEE--------LWCIKNLCKLELH  383 (415)
Q Consensus       323 -~~~~~~L----------~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~--------l~~l~~L~~L~l~  383 (415)
                       .+.+++|          +.|++++|..++.+|  .+.+++|+.|++++|+.++.+|..        +.++++|+.|+++
T Consensus       249 ~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~  326 (457)
T 3bz5_A          249 DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLN  326 (457)
T ss_dssp             CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT
T ss_pred             CHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECC
Confidence             3445555          455666666666666  478999999999999987776642        4455677777776


Q ss_pred             cCC
Q 043839          384 WPQ  386 (415)
Q Consensus       384 ~c~  386 (415)
                      ++.
T Consensus       327 ~N~  329 (457)
T 3bz5_A          327 NTE  329 (457)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.83  E-value=3.8e-20  Score=172.82  Aligned_cols=230  Identities=18%  Similarity=0.108  Sum_probs=117.2

Q ss_pred             ccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC---cccccCccCCceEecCcccccccccC
Q 043839          115 FPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY---PPGLENLFHLKYLKLITPLLKLMQKL  191 (415)
Q Consensus       115 ~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~i~~l~~L  191 (415)
                      .++....++++.|.+.++..    ..+....|.++++|++|++++|.++..   |..+..+++|++|++++         
T Consensus        21 ~ip~~~~~~l~~L~L~~n~l----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~---------   87 (306)
T 2z66_A           21 SVPTGIPSSATRLELESNKL----QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF---------   87 (306)
T ss_dssp             SCCSCCCTTCCEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS---------
T ss_pred             cCCCCCCCCCCEEECCCCcc----CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC---------
Confidence            34443355677777766665    344444566777777777777766532   44444555555555554         


Q ss_pred             cEEEecCCCCCCCCCCcccCccccceeccccCC-CCCc--cccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEe
Q 043839          192 MHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTP--DILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKL  268 (415)
Q Consensus       192 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  268 (415)
                             |. ...+|..+..+++|++|++.++. ..++  ..+..+++|++|++++|  ......+..+..+++|+.|++
T Consensus        88 -------n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l  157 (306)
T 2z66_A           88 -------NG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--HTRVAFNGIFNGLSSLEVLKM  157 (306)
T ss_dssp             -------CS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS--CCEECSTTTTTTCTTCCEEEC
T ss_pred             -------Cc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC--cCCccchhhcccCcCCCEEEC
Confidence                   22 22334444445555555555544 2222  23445555555555555  233333444455555555555


Q ss_pred             ecCccccccccccc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceE-Ec
Q 043839          269 VNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWT-MG  346 (415)
Q Consensus       269 ~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~-~~  346 (415)
                      ++ +.+-+  ..+| .+..+ ++|++|++++|.+++..+..++.+++|+.|++              ++| .++.++ ..
T Consensus       158 ~~-n~l~~--~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--------------~~N-~l~~~~~~~  218 (306)
T 2z66_A          158 AG-NSFQE--NFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM--------------SHN-NFFSLDTFP  218 (306)
T ss_dssp             TT-CEEGG--GEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEEC--------------TTS-CCSBCCSGG
T ss_pred             CC-Ccccc--ccchhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC--------------CCC-ccCccChhh
Confidence            54 21100  0034 55666 67777777777665544555554444444443              444 233332 23


Q ss_pred             CCCccCccEEEEecCcccCCChhhhcCCC-CCCeEEEecCC
Q 043839          347 AGSMPKLESLILNPCAYLRKLPEELWCIK-NLCKLELHWPQ  386 (415)
Q Consensus       347 ~~~l~~L~~L~l~~c~~~~~lp~~l~~l~-~L~~L~l~~c~  386 (415)
                      +..+++|+.|++++|...+..|..+..++ +|+.|++++++
T Consensus       219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            45555666666666655554555555553 56666665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.83  E-value=1.8e-20  Score=174.96  Aligned_cols=207  Identities=14%  Similarity=0.139  Sum_probs=117.1

Q ss_pred             cEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCcEEEecCCCCCC--CCCCcccCccccceecccc
Q 043839          153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPS--PPNNYSSSLKDLIFISAVH  222 (415)
Q Consensus       153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~L~l~~  222 (415)
                      +.++.+++.++.+|..+.  .+|++|++++        ..++++++|++|++++|.+..  ..|..+..+++|++|++.+
T Consensus        10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            345555555555554332  2333333332        112334444444444333221  1133444556666666666


Q ss_pred             CC-CCCccccCCCCCCCeEEEecccCcchhcHH-HhhhccCCCcEEEeecCccccccccc---cc-CCCCCCCCceEEEE
Q 043839          223 PS-SCTPDILGRLPNVQTLRISGDLSYHHSGVS-KSLCELHKLECLKLVNEGKMWQFSRM---IL-SEYKFPPTLTQLSL  296 (415)
Q Consensus       223 ~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~il~~l~L---lp-~~~~lp~~L~~L~l  296 (415)
                      +. ..++..+..+++|++|+++++  ......+ ..+..+++|+.|++++ +      ++   .| .+..+ ++|++|++
T Consensus        88 n~i~~l~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~-n------~l~~~~~~~~~~l-~~L~~L~l  157 (306)
T 2z66_A           88 NGVITMSSNFLGLEQLEHLDFQHS--NLKQMSEFSVFLSLRNLIYLDISH-T------HTRVAFNGIFNGL-SSLEVLKM  157 (306)
T ss_dssp             CSEEEEEEEEETCTTCCEEECTTS--EEESSTTTTTTTTCTTCCEEECTT-S------CCEECSTTTTTTC-TTCCEEEC
T ss_pred             CccccChhhcCCCCCCCEEECCCC--cccccccchhhhhccCCCEEECCC-C------cCCccchhhcccC-cCCCEEEC
Confidence            66 555555666666666666665  1221111 2445555555555555 2      11   22 44455 55555555


Q ss_pred             EccccCC-CCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccce-EEcCCCccCccEEEEecCcccCCChhhhcCC
Q 043839          297 SNTKLME-DPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEW-TMGAGSMPKLESLILNPCAYLRKLPEELWCI  374 (415)
Q Consensus       297 ~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l  374 (415)
                      ++|.+.+ ..+..+              ..+++|++|++++| .++.+ |..++.+++|+.|++++|...+..+..+..+
T Consensus       158 ~~n~l~~~~~~~~~--------------~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  222 (306)
T 2z66_A          158 AGNSFQENFLPDIF--------------TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL  222 (306)
T ss_dssp             TTCEEGGGEECSCC--------------TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred             CCCccccccchhHH--------------hhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence            5555433 123333              34566777777888 56655 5678899999999999998876555678899


Q ss_pred             CCCCeEEEecCC
Q 043839          375 KNLCKLELHWPQ  386 (415)
Q Consensus       375 ~~L~~L~l~~c~  386 (415)
                      ++|+.|++++|+
T Consensus       223 ~~L~~L~L~~N~  234 (306)
T 2z66_A          223 NSLQVLDYSLNH  234 (306)
T ss_dssp             TTCCEEECTTSC
T ss_pred             ccCCEeECCCCC
Confidence            999999999986

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.82  E-value=1.6e-19  Score=185.00  Aligned_cols=97  Identities=19%  Similarity=0.167  Sum_probs=67.5

Q ss_pred             CCceEEEEEccccCC-CCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceE-EcCCCccCccEE
Q 043839          289 PTLTQLSLSNTKLME-DPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWT-MGAGSMPKLESL  356 (415)
Q Consensus       289 ~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L  356 (415)
                      ++++.|++++|.... ..+..++.+++|++|++++          ..++++|++|+|++| .++.++ ..++.+++|+.|
T Consensus       469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L  547 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVL  547 (635)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEE
T ss_pred             hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEE
Confidence            555556665554322 2345566777777777776          345678888888887 566554 457788888888


Q ss_pred             EEecCcccCCChhhhcCC-CCCCeEEEecCC
Q 043839          357 ILNPCAYLRKLPEELWCI-KNLCKLELHWPQ  386 (415)
Q Consensus       357 ~l~~c~~~~~lp~~l~~l-~~L~~L~l~~c~  386 (415)
                      ++++|...+..|..+.++ ++|+.|+++++|
T Consensus       548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             ECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            888888777667777776 678888887644

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.82  E-value=1.1e-19  Score=178.41  Aligned_cols=232  Identities=16%  Similarity=0.119  Sum_probs=138.5

Q ss_pred             CCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCc-ccccCccCCceEecCccccccc
Q 043839          110 DLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYP-PGLENLFHLKYLKLITPLLKLM  188 (415)
Q Consensus       110 ~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~l  188 (415)
                      +.....+|....++++.|.+.++..    ..+.+..|.++++|++|++++|.++.++ ..+.                ++
T Consensus        52 ~~~l~~iP~~~~~~l~~L~L~~n~i----~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~----------------~l  111 (440)
T 3zyj_A           52 RKNLREVPDGISTNTRLLNLHENQI----QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN----------------GL  111 (440)
T ss_dssp             SCCCSSCCSCCCTTCSEEECCSCCC----CEECTTTTSSCSSCCEEECCSSCCCEECGGGGT----------------TC
T ss_pred             CCCcCcCCCCCCCCCcEEEccCCcC----CeeCHHHhhCCCCCCEEECCCCcCCccChhhcc----------------CC
Confidence            3333445544466677777766665    3444455667777777777777666333 3344                44


Q ss_pred             ccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEecccCcchhcHH-HhhhccCCCcE
Q 043839          189 QKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGDLSYHHSGVS-KSLCELHKLEC  265 (415)
Q Consensus       189 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~  265 (415)
                      ++|++|++++|.+....+..+..+++|++|++.++. ..++. .+..+++|++|+++++  .....++ ..+..+++|+.
T Consensus       112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~--~~l~~i~~~~~~~l~~L~~  189 (440)
T 3zyj_A          112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL--KRLSYISEGAFEGLSNLRY  189 (440)
T ss_dssp             SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC--TTCCEECTTTTTTCSSCCE
T ss_pred             ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC--CCcceeCcchhhcccccCe
Confidence            555555555444443333356777777777777776 43333 4667777777777765  2333333 24566777777


Q ss_pred             EEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccce
Q 043839          266 LKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEW  343 (415)
Q Consensus       266 L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l  343 (415)
                      |++++ +      ++  +|.+..+ ++|+.|++++|.+++..+..+..+++|+.|++              ++| .++.+
T Consensus       190 L~L~~-n------~l~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L--------------~~n-~l~~~  246 (440)
T 3zyj_A          190 LNLAM-C------NLREIPNLTPL-IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM--------------IQS-QIQVI  246 (440)
T ss_dssp             EECTT-S------CCSSCCCCTTC-SSCCEEECTTSCCCEECTTTTTTCTTCCEEEC--------------TTC-CCCEE
T ss_pred             ecCCC-C------cCccccccCCC-cccCEEECCCCccCccChhhhccCccCCEEEC--------------CCC-ceeEE
Confidence            77766 4      22  5555667 78888888888776655666665555555554              555 34433


Q ss_pred             E-EcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          344 T-MGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       344 ~-~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      + ..+..+++|+.|++++|......+..+..+++|+.|+++++|
T Consensus       247 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             ChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            3 345667777777777776554333445667777777776554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.82  E-value=1.6e-19  Score=177.88  Aligned_cols=226  Identities=15%  Similarity=0.107  Sum_probs=135.9

Q ss_pred             cCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCc-ccccCccCCceEecCcccccccccCcEE
Q 043839          116 PLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYP-PGLENLFHLKYLKLITPLLKLMQKLMHL  194 (415)
Q Consensus       116 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~l~~L~~L  194 (415)
                      ++....++++.|.+.++..    ..+.+..|.++++|++|++++|.++.++ ..+                .++++|++|
T Consensus        69 iP~~~~~~l~~L~L~~n~i----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~----------------~~l~~L~~L  128 (452)
T 3zyi_A           69 VPQGIPSNTRYLNLMENNI----QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF----------------NGLASLNTL  128 (452)
T ss_dssp             CCSCCCTTCSEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCCEECTTTT----------------TTCTTCCEE
T ss_pred             cCCCCCCCccEEECcCCcC----ceECHHHcCCCCCCCEEECCCCccCCcChhhc----------------cCcccCCEE
Confidence            4443355666666666655    3344455666666666666666665322 333                444555555


Q ss_pred             EecCCCCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEecccCcchhcHHH-hhhccCCCcEEEeecC
Q 043839          195 NFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGDLSYHHSGVSK-SLCELHKLECLKLVNE  271 (415)
Q Consensus       195 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~  271 (415)
                      ++++|.+....+..++.+++|++|++.++. ..++. .+..+++|+.|+++++  .....++. .+..+++|+.|++++ 
T Consensus       129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~--~~l~~i~~~~~~~l~~L~~L~L~~-  205 (452)
T 3zyi_A          129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL--KKLEYISEGAFEGLFNLKYLNLGM-  205 (452)
T ss_dssp             ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC--TTCCEECTTTTTTCTTCCEEECTT-
T ss_pred             ECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC--CCccccChhhccCCCCCCEEECCC-
Confidence            555454443333446777777777777776 44433 4667777777777775  23333332 456677777777776 


Q ss_pred             ccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccce-EEcCC
Q 043839          272 GKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEW-TMGAG  348 (415)
Q Consensus       272 ~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l-~~~~~  348 (415)
                      +      ++  +|.+..+ ++|+.|++++|.+++..+..++.+++|+.|++              ++| .++.+ +..+.
T Consensus       206 n------~l~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L--------------~~n-~l~~~~~~~~~  263 (452)
T 3zyi_A          206 C------NIKDMPNLTPL-VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV--------------MNS-QVSLIERNAFD  263 (452)
T ss_dssp             S------CCSSCCCCTTC-TTCCEEECTTSCCSEECGGGGTTCTTCCEEEC--------------TTS-CCCEECTTTTT
T ss_pred             C------ccccccccccc-ccccEEECcCCcCcccCcccccCccCCCEEEe--------------CCC-cCceECHHHhc
Confidence            3      22  5555667 78888888888776666666666655555554              555 34433 34466


Q ss_pred             CccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          349 SMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       349 ~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      .+++|+.|++++|....-.+..+..+++|+.|+++++|
T Consensus       264 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence            77777777777776653333445667777777777655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.81  E-value=7.1e-20  Score=169.21  Aligned_cols=198  Identities=20%  Similarity=0.172  Sum_probs=129.2

Q ss_pred             CCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCccCCceEecCc------
Q 043839          110 DLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLFHLKYLKLIT------  182 (415)
Q Consensus       110 ~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~------  182 (415)
                      +.....++....++++.|.+.++..    ..+.+..|.++++|++|++++|.++.+ |..+.++++|++|++++      
T Consensus        20 ~~~l~~ip~~~~~~l~~L~l~~n~i----~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~   95 (285)
T 1ozn_A           20 QQGLQAVPVGIPAASQRIFLHGNRI----SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS   95 (285)
T ss_dssp             SSCCSSCCTTCCTTCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred             cCCcccCCcCCCCCceEEEeeCCcC----CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc
Confidence            3444445544477888888888877    455556688888899999988888844 66777788888888776      


Q ss_pred             ---ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEecccCcchhcHHHhh
Q 043839          183 ---PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGDLSYHHSGVSKSL  257 (415)
Q Consensus       183 ---~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l  257 (415)
                         ..+.++++|++|++++|.+....|..++.+++|++|++.++. ..++. .++.+++|++|++++|  ......+..+
T Consensus        96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~  173 (285)
T 1ozn_A           96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN--RISSVPERAF  173 (285)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCEECTTTT
T ss_pred             cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC--cccccCHHHh
Confidence               234556777777777555555556666777777777777776 44433 3666777777777776  2333233346


Q ss_pred             hccCCCcEEEeecCccccccccc---cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeec
Q 043839          258 CELHKLECLKLVNEGKMWQFSRM---IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLK  321 (415)
Q Consensus       258 ~~l~~L~~L~l~~~~~il~~l~L---lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  321 (415)
                      ..+++|+.|++++ +      ++   .| ++..+ ++|+.|++++|.+++..+..++.+++|+.|+++
T Consensus       174 ~~l~~L~~L~l~~-n------~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  233 (285)
T 1ozn_A          174 RGLHSLDRLLLHQ-N------RVAHVHPHAFRDL-GRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (285)
T ss_dssp             TTCTTCCEEECCS-S------CCCEECTTTTTTC-TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             cCccccCEEECCC-C------cccccCHhHccCc-ccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence            6667777777766 4      22   34 66666 677777777777665555556655555555553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=6.4e-21  Score=179.09  Aligned_cols=232  Identities=18%  Similarity=0.070  Sum_probs=152.0

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc---ccccccccCcEEEec
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT---PLLKLMQKLMHLNFG  197 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~---~~i~~l~~L~~L~l~  197 (415)
                      .++++.|.+.++..    ..+.+..+.++++|++|++++|.++..+. +..+++|++|++++   ..+...++|++|+++
T Consensus        33 ~~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~  107 (317)
T 3o53_A           33 AWNVKELDLSGNPL----SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAA  107 (317)
T ss_dssp             GGGCSEEECTTSCC----CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred             CCCCCEEECcCCcc----CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECC
Confidence            45777777777766    44556677778888888888887774444 77777888888877   444455777778777


Q ss_pred             CCCCCCCCCCcccCccccceeccccCC-CCC-ccccCCCCCCCeEEEecccCcchhcHHHhh-hccCCCcEEEeecCccc
Q 043839          198 SITMPSPPNNYSSSLKDLIFISAVHPS-SCT-PDILGRLPNVQTLRISGDLSYHHSGVSKSL-CELHKLECLKLVNEGKM  274 (415)
Q Consensus       198 ~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~i  274 (415)
                      +|.+....+   ..+++|++|++.++. ..+ +..++.+++|+.|++++|  ......+..+ ..+++|+.|++++ +  
T Consensus       108 ~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~L~L~~-N--  179 (317)
T 3o53_A          108 NNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLNLQY-N--  179 (317)
T ss_dssp             SSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEEECTT-S--
T ss_pred             CCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC--CCCcccHHHHhhccCcCCEEECCC-C--
Confidence            555433222   235667777777777 333 335667777777777777  3444334444 3567777777776 4  


Q ss_pred             cccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccC
Q 043839          275 WQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPK  352 (415)
Q Consensus       275 l~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~  352 (415)
                          ++  +|....+ ++|++|++++|.+++ .++.++.+              ++|++|++++| .++.+|..+..+++
T Consensus       180 ----~l~~~~~~~~l-~~L~~L~Ls~N~l~~-l~~~~~~l--------------~~L~~L~L~~N-~l~~l~~~~~~l~~  238 (317)
T 3o53_A          180 ----FIYDVKGQVVF-AKLKTLDLSSNKLAF-MGPEFQSA--------------AGVTWISLRNN-KLVLIEKALRFSQN  238 (317)
T ss_dssp             ----CCCEEECCCCC-TTCCEEECCSSCCCE-ECGGGGGG--------------TTCSEEECTTS-CCCEECTTCCCCTT
T ss_pred             ----cCccccccccc-ccCCEEECCCCcCCc-chhhhccc--------------CcccEEECcCC-cccchhhHhhcCCC
Confidence                22  3422335 777777777777643 23334444              45555556676 66677777788888


Q ss_pred             ccEEEEecCccc-CCChhhhcCCCCCCeEEEecCC
Q 043839          353 LESLILNPCAYL-RKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       353 L~~L~l~~c~~~-~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      |+.|++++|+.. +.+|..+..++.|+.+++.+++
T Consensus       239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence            888888888876 5567777778888877777543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.80  E-value=5.2e-19  Score=163.41  Aligned_cols=176  Identities=17%  Similarity=0.102  Sum_probs=93.4

Q ss_pred             cccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCC-ccccCCCCCCCeEEEecccCcchhcHHHhhhccCC
Q 043839          186 KLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCT-PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHK  262 (415)
Q Consensus       186 ~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~  262 (415)
                      +++++|++|++++|.+....|..++.+++|++|++.++.  ..+ +..+..+++|++|+++++  ......+..+..+++
T Consensus        53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~  130 (285)
T 1ozn_A           53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC--GLQELGPGLFRGLAA  130 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTT
T ss_pred             ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC--cCCEECHhHhhCCcC
Confidence            334444444444343333334445555555555555553  222 344555555555555555  233333334444555


Q ss_pred             CcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCC
Q 043839          263 LECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSML  338 (415)
Q Consensus       263 L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~  338 (415)
                      |+.|++++ +      ++  +|  .+..+ ++|++|++++|.+++..+..++.+              ++|++|++++| 
T Consensus       131 L~~L~l~~-n------~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~l~~n-  187 (285)
T 1ozn_A          131 LQYLYLQD-N------ALQALPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGL--------------HSLDRLLLHQN-  187 (285)
T ss_dssp             CCEEECCS-S------CCCCCCTTTTTTC-TTCCEEECCSSCCCEECTTTTTTC--------------TTCCEEECCSS-
T ss_pred             CCEEECCC-C------cccccCHhHhccC-CCccEEECCCCcccccCHHHhcCc--------------cccCEEECCCC-
Confidence            55555544 2      11  23  34555 666666666665543333334333              44555555666 


Q ss_pred             Cccce-EEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          339 WLEEW-TMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       339 ~l~~l-~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      .++.+ |..++.+++|+.|++++|...+..+..+..+++|+.|+++++|
T Consensus       188 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            34433 5566777777888887777665444557777778888777655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.80  E-value=5e-21  Score=179.44  Aligned_cols=188  Identities=20%  Similarity=0.169  Sum_probs=101.0

Q ss_pred             cccCcEEEecCCCCCCCCCCcc--cCccccceeccccCC-CCCccccCCC-----CCCCeEEEecccCcchhcHHHhhhc
Q 043839          188 MQKLMHLNFGSITMPSPPNNYS--SSLKDLIFISAVHPS-SCTPDILGRL-----PNVQTLRISGDLSYHHSGVSKSLCE  259 (415)
Q Consensus       188 l~~L~~L~l~~~~~~~~~p~~i--~~l~~L~~L~l~~~~-~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~l~~  259 (415)
                      +++|++|++++|.+.+.+|..+  +.+++|++|+++++. ...|..++.+     ++|++|++++|  ...+..+..++.
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N--~l~~~~~~~~~~  171 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA--HSLNFSCEQVRV  171 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC--SCCCCCTTTCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC--CCccchHHHhcc
Confidence            4445555554444444444443  445555555555544 3334333333     45555555554  233333344445


Q ss_pred             cCCCcEEEeecCccccccccc-cc-C--CCCCCCCceEEEEEccccCC--CCc-hhhcCCCCCCeEeecc----------
Q 043839          260 LHKLECLKLVNEGKMWQFSRM-IL-S--EYKFPPTLTQLSLSNTKLME--DPM-PTLEKLPLLEVLKLKQ----------  322 (415)
Q Consensus       260 l~~L~~L~l~~~~~il~~l~L-lp-~--~~~lp~~L~~L~l~~~~l~~--~~~-~~l~~l~~L~~L~l~~----------  322 (415)
                      +++|+.|++++ |.+..  .. +| .  +..+ ++|++|++++|.+++  ..+ ..+..+++|+.|++++          
T Consensus       172 l~~L~~L~Ls~-N~l~~--~~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  247 (312)
T 1wwl_A          172 FPALSTLDLSD-NPELG--ERGLISALCPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP  247 (312)
T ss_dssp             CSSCCEEECCS-CTTCH--HHHHHHHSCTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred             CCCCCEEECCC-CCcCc--chHHHHHHHhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence            55555555544 31000  00 11 1  1444 555555555555431  111 1223445555555554          


Q ss_pred             -CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          323 -NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       323 -~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                       ...+++|++|++++| .++.+|..+.  ++|+.|++++|...+ +|. +..+++|++|++++++
T Consensus       248 ~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~l~~-~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          248 SCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSSCCCS-CCC-TTTSCEEEEEECTTCT
T ss_pred             hhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCCCCCC-Chh-HhhCCCCCEEeccCCC
Confidence             122467888888888 5678877665  899999999997764 565 8889999999998875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=3e-20  Score=184.69  Aligned_cols=229  Identities=17%  Similarity=0.070  Sum_probs=167.6

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc---ccccccccCcEEEec
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT---PLLKLMQKLMHLNFG  197 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~---~~i~~l~~L~~L~l~  197 (415)
                      +++|++|.+.++..    ..+.+..|..+++|++|++++|.++..++ ++.+++|++|++++   ..+...++|++|+++
T Consensus        33 ~~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~  107 (487)
T 3oja_A           33 AWNVKELDLSGNPL----SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAA  107 (487)
T ss_dssp             GGGCCEEECCSSCC----CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred             CCCccEEEeeCCcC----CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECc
Confidence            45899999988887    45566778899999999999998885554 88889999999988   445556889999998


Q ss_pred             CCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhh-ccCCCcEEEeecCccc
Q 043839          198 SITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLC-ELHKLECLKLVNEGKM  274 (415)
Q Consensus       198 ~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~i  274 (415)
                      +|.+....+.   .+++|++|++.++.  ...|..++.+++|+.|++++|  ...+..|..+. .+++|+.|++++ |  
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~l~~~l~~L~~L~Ls~-N--  179 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLNLQY-N--  179 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEEECTT-S--
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC--CCCCcChHHHhhhCCcccEEecCC-C--
Confidence            6655443332   45788899998888  444566788889999999888  45555666665 688888888888 4  


Q ss_pred             cccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccC
Q 043839          275 WQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPK  352 (415)
Q Consensus       275 l~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~  352 (415)
                          .+  +|....+ ++|+.|++++|.+++. ++.++.++              +|+.|++++| .++.+|..++.+++
T Consensus       180 ----~l~~~~~~~~l-~~L~~L~Ls~N~l~~~-~~~~~~l~--------------~L~~L~Ls~N-~l~~lp~~l~~l~~  238 (487)
T 3oja_A          180 ----FIYDVKGQVVF-AKLKTLDLSSNKLAFM-GPEFQSAA--------------GVTWISLRNN-KLVLIEKALRFSQN  238 (487)
T ss_dssp             ----CCCEEECCCCC-TTCCEEECCSSCCCEE-CGGGGGGT--------------TCSEEECTTS-CCCEECTTCCCCTT
T ss_pred             ----ccccccccccC-CCCCEEECCCCCCCCC-CHhHcCCC--------------CccEEEecCC-cCcccchhhccCCC
Confidence                22  4433356 8888888888887643 33455444              4555555666 56677777888888


Q ss_pred             ccEEEEecCccc-CCChhhhcCCCCCCeEEEe
Q 043839          353 LESLILNPCAYL-RKLPEELWCIKNLCKLELH  383 (415)
Q Consensus       353 L~~L~l~~c~~~-~~lp~~l~~l~~L~~L~l~  383 (415)
                      |+.|++++|+.. +.+|..+..++.|+.+++.
T Consensus       239 L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            888888888876 4566677777777766664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.79  E-value=5.7e-18  Score=172.18  Aligned_cols=243  Identities=15%  Similarity=0.015  Sum_probs=187.6

Q ss_pred             ceeEEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEec
Q 043839          101 NVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKL  180 (415)
Q Consensus       101 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l  180 (415)
                      .++.+.+. ++....++....+++++|.+.++...    .+..    .+++|++|++++|.++.+|.   .+++|++|++
T Consensus        41 ~l~~L~ls-~n~L~~lp~~l~~~L~~L~L~~N~l~----~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVG-ESGLTTLPDCLPAHITTLVIPDNNLT----SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECC-SSCCSCCCSCCCTTCSEEEECSCCCS----CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred             CCcEEEec-CCCcCccChhhCCCCcEEEecCCCCC----CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence            46677777 76666676655789999999998873    3322    57899999999999998887   6789999999


Q ss_pred             Cccccc----ccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHH
Q 043839          181 ITPLLK----LMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSK  255 (415)
Q Consensus       181 ~~~~i~----~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  255 (415)
                      ++..+.    .+++|++|++++|. ...+|..   +++|++|++++|. ..+|.   .+++|+.|++++|   ....+| 
T Consensus       109 s~N~l~~l~~~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N---~l~~l~-  177 (622)
T 3g06_A          109 FSNPLTHLPALPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNN---QLTSLP-  177 (622)
T ss_dssp             CSCCCCCCCCCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS---CCSCCC-
T ss_pred             cCCcCCCCCCCCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCC---CCCCCc-
Confidence            983222    46789999999554 4557764   4889999999998 66664   3578999999988   333344 


Q ss_pred             hhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc------CCCCC
Q 043839          256 SLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ------NSSFP  327 (415)
Q Consensus       256 ~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~------~~~~~  327 (415)
                        ..+++|+.|++++ |      ++  +|  ..+ ++|+.|++++|.++. ++.   .+++|+.|++++      ...++
T Consensus       178 --~~~~~L~~L~Ls~-N------~l~~l~--~~~-~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp~~l~  241 (622)
T 3g06_A          178 --MLPSGLQELSVSD-N------QLASLP--TLP-SELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLPVLPS  241 (622)
T ss_dssp             --CCCTTCCEEECCS-S------CCSCCC--CCC-TTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCCCCCT
T ss_pred             --ccCCCCcEEECCC-C------CCCCCC--Ccc-chhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCCCCCC
Confidence              4568899999988 4      22  33  123 889999999998753 333   358899999987      35568


Q ss_pred             cccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839          328 LLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       328 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~  387 (415)
                      +|+.|++++| .++.+|.   .+++|+.|++++|... .+|..+.++++|+.|++++|+-
T Consensus       242 ~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          242 ELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             TCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCC
T ss_pred             cCcEEECCCC-CCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCC
Confidence            8999999998 7778876   6789999999999776 7898899999999999999873

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.79  E-value=2.2e-18  Score=169.60  Aligned_cols=70  Identities=23%  Similarity=0.195  Sum_probs=42.9

Q ss_pred             CCCCeEeecc------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccC--CChhhhcCC----------
Q 043839          313 PLLEVLKLKQ------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLR--KLPEELWCI----------  374 (415)
Q Consensus       313 ~~L~~L~l~~------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~--~lp~~l~~l----------  374 (415)
                      ++|+.|++++      ...+++|++|++++| .++.+|.   .+++|++|++++|...+  .+|.++.++          
T Consensus       317 ~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~  392 (454)
T 1jl5_A          317 PSLEELNVSNNKLIELPALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP  392 (454)
T ss_dssp             TTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------
T ss_pred             CcCCEEECCCCccccccccCCcCCEEECCCC-ccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccc
Confidence            4777777776      233567888888887 5666765   57888888888888777  677777766          


Q ss_pred             ---CCCCeEEEecCC
Q 043839          375 ---KNLCKLELHWPQ  386 (415)
Q Consensus       375 ---~~L~~L~l~~c~  386 (415)
                         ++|+.|++++++
T Consensus       393 ~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          393 ELPQNLKQLHVETNP  407 (454)
T ss_dssp             ---------------
T ss_pred             cccCcCCEEECCCCc
Confidence               788888888765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=3.2e-19  Score=167.48  Aligned_cols=210  Identities=16%  Similarity=0.093  Sum_probs=138.7

Q ss_pred             cchHHHhccCCcccEEEcCCcccccCc-ccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCc
Q 043839          140 IDCENFCKKFKHLRVLNLGSAVLDLYP-PGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSL  212 (415)
Q Consensus       140 ~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l  212 (415)
                      ..+...+..+++|++|++++|.++.++ ..+.++++|++|++++      ..+..+++|++|++++|.+. .    +...
T Consensus        24 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~-~----l~~~   98 (317)
T 3o53_A           24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-E----LLVG   98 (317)
T ss_dssp             HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEE-E----EEEC
T ss_pred             hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccc-c----ccCC
Confidence            344566778889999999999999554 6788888888888877      33556666777777644322 1    2233


Q ss_pred             cccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCCc
Q 043839          213 KDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTL  291 (415)
Q Consensus       213 ~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L  291 (415)
                      ++|++|++.++. ..++.  ..+++|+.|++++|  ......+..+..+++|+.|+++                      
T Consensus        99 ~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L~Ls----------------------  152 (317)
T 3o53_A           99 PSIETLHAANNNISRVSC--SRGQGKKNIYLANN--KITMLRDLDEGCRSRVQYLDLK----------------------  152 (317)
T ss_dssp             TTCCEEECCSSCCSEEEE--CCCSSCEEEECCSS--CCCSGGGBCTGGGSSEEEEECT----------------------
T ss_pred             CCcCEEECCCCccCCcCc--cccCCCCEEECCCC--CCCCccchhhhccCCCCEEECC----------------------
Confidence            566666666665 33332  23556666666665  2332223344444555555554                      


Q ss_pred             eEEEEEccccCCCCchhh-cCCCCCCeEeecc--------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCc
Q 043839          292 TQLSLSNTKLMEDPMPTL-EKLPLLEVLKLKQ--------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCA  362 (415)
Q Consensus       292 ~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~--------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~  362 (415)
                            +|.+.+..+..+ +.+++|++|++++        ...+++|++|++++| .++.+|..+..+++|+.|++++|.
T Consensus       153 ------~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          153 ------LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             ------TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC
T ss_pred             ------CCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc
Confidence                  444433333332 2344444444444        234678888899998 788888889999999999999997


Q ss_pred             ccCCChhhhcCCCCCCeEEEecCChh
Q 043839          363 YLRKLPEELWCIKNLCKLELHWPQPH  388 (415)
Q Consensus       363 ~~~~lp~~l~~l~~L~~L~l~~c~~~  388 (415)
                      .. .+|..+..+++|+.|++++++-.
T Consensus       226 l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          226 LV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             cc-chhhHhhcCCCCCEEEccCCCcc
Confidence            76 68888999999999999998753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.76  E-value=3.5e-18  Score=156.74  Aligned_cols=196  Identities=19%  Similarity=0.226  Sum_probs=118.3

Q ss_pred             cCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccc
Q 043839          148 KFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAV  221 (415)
Q Consensus       148 ~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~  221 (415)
                      .+++|+.|+++++.++.++ .+..+++|++|++++      +.++++++|++|++++|.+....+..++.+++|++|++.
T Consensus        39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            3444555555555444333 244444555555444      334556666666776555554444556778888888888


Q ss_pred             cCC-CCCcc-ccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEE
Q 043839          222 HPS-SCTPD-ILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLS  295 (415)
Q Consensus       222 ~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~  295 (415)
                      ++. ..++. .++.+++|++|++++|  ...+..+..+..+++|+.|++++ +      ++  +|  .+..+ ++|++|+
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~-n------~l~~~~~~~~~~l-~~L~~L~  187 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHN--QLQSLPKGVFDKLTNLTELDLSY-N------QLQSLPEGVFDKL-TQLKDLR  187 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-S------CCCCCCTTTTTTC-TTCCEEE
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCC--ccCccCHHHhccCccCCEEECCC-C------CcCccCHHHhcCC-ccCCEEE
Confidence            877 44443 3677888888888887  34333344456777777777777 4      22  44  46777 8888888


Q ss_pred             EEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCC
Q 043839          296 LSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIK  375 (415)
Q Consensus       296 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~  375 (415)
                      +++|.+++..+..++.+++|+.|++              ++|+.       .+.+++|+.|++..|...+.+|.+++.++
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l--------------~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWL--------------HDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEEC--------------CSSCB-------CCCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEc--------------cCCCc-------cccCcHHHHHHHHHHhCCCcccCcccccC
Confidence            8888887666656666666666655              44421       13455666666666666666665554443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.75  E-value=4.3e-18  Score=156.43  Aligned_cols=193  Identities=20%  Similarity=0.148  Sum_probs=96.6

Q ss_pred             CcccEEEcCCcccccCcc-cccCccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceecc
Q 043839          150 KHLRVLNLGSAVLDLYPP-GLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISA  220 (415)
Q Consensus       150 ~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l  220 (415)
                      ++|++|++++|.++.++. .+.++++|++|++++        ..++++++|++|++++|.+....+..++.+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            457777777777774443 555666666666655        12344444444444433333333333444444444444


Q ss_pred             ccCC-CCCcc-ccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCCCceEEEEE
Q 043839          221 VHPS-SCTPD-ILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLS  297 (415)
Q Consensus       221 ~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~  297 (415)
                      .++. ..++. .++.+++|++|++++|.  ....                   .        +| .+..+ ++|++|+++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~-------------------~--------l~~~~~~l-~~L~~L~Ls  157 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNL--IQSF-------------------K--------LPEYFSNL-TNLEHLDLS  157 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSC--CCCC-------------------C--------CCGGGGGC-TTCCEEECC
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCc--ccee-------------------c--------CchhhccC-CCCCEEECC
Confidence            4444 22221 24444444444444431  1110                   0        34 45555 666666666


Q ss_pred             ccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCC
Q 043839          298 NTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNL  377 (415)
Q Consensus       298 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L  377 (415)
                      +|.+++..+..++.+++|+.+.+          .|++++| .++.++.......+|+.|++++|...+..+..+..+++|
T Consensus       158 ~N~l~~~~~~~~~~l~~L~~l~l----------~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  226 (276)
T 2z62_A          158 SNKIQSIYCTDLRVLHQMPLLNL----------SLDLSLN-PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSL  226 (276)
T ss_dssp             SSCCCEECGGGGHHHHTCTTCCE----------EEECCSS-CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred             CCCCCcCCHHHhhhhhhccccce----------eeecCCC-cccccCccccCCCcccEEECCCCceeecCHhHhcccccc
Confidence            66655444444444444442221          4555555 455555444445567777777666543222334666777


Q ss_pred             CeEEEe
Q 043839          378 CKLELH  383 (415)
Q Consensus       378 ~~L~l~  383 (415)
                      +.|+++
T Consensus       227 ~~L~l~  232 (276)
T 2z62_A          227 QKIWLH  232 (276)
T ss_dssp             CEEECC
T ss_pred             cEEEcc
Confidence            777776

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=1.5e-18  Score=172.52  Aligned_cols=206  Identities=16%  Similarity=0.084  Sum_probs=136.0

Q ss_pred             cCCcccEEEcCCcccccC-cccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceecc
Q 043839          148 KFKHLRVLNLGSAVLDLY-PPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISA  220 (415)
Q Consensus       148 ~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l  220 (415)
                      .+++|++|++++|.++.+ |..++.+++|++|++++      ..++.+++|++|++++|.+. .+|    ..++|++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~l~----~~~~L~~L~L  106 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHA  106 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEE-EEE----ECTTCCEEEC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCC-CCC----CCCCcCEEEC
Confidence            344899999999999955 56788888888888887      33566677777777744332 222    2356666666


Q ss_pred             ccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc---cc-CCC-CCCCCceEE
Q 043839          221 VHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM---IL-SEY-KFPPTLTQL  294 (415)
Q Consensus       221 ~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L---lp-~~~-~lp~~L~~L  294 (415)
                      .+|. ..++.  ..+++|+.|++++|  ...+..|..++.+++|+.|++++ |      ++   .| .+. .+ ++|+.|
T Consensus       107 ~~N~l~~~~~--~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~-N------~l~~~~~~~l~~~l-~~L~~L  174 (487)
T 3oja_A          107 ANNNISRVSC--SRGQGKKNIYLANN--KITMLRDLDEGCRSRVQYLDLKL-N------EIDTVNFAELAASS-DTLEHL  174 (487)
T ss_dssp             CSSCCCCEEE--CCCSSCEEEECCSS--CCCSGGGBCGGGGSSEEEEECTT-S------CCCEEEGGGGGGGT-TTCCEE
T ss_pred             cCCcCCCCCc--cccCCCCEEECCCC--CCCCCCchhhcCCCCCCEEECCC-C------CCCCcChHHHhhhC-CcccEE
Confidence            6666 33332  23566666666666  33333344455555555555554 3      11   22 222 34 455555


Q ss_pred             EEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCC
Q 043839          295 SLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCI  374 (415)
Q Consensus       295 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l  374 (415)
                      ++++|.+++. + .              ...+++|++|++++| .++.+|..++.+++|+.|++++|... .+|..+..+
T Consensus       175 ~Ls~N~l~~~-~-~--------------~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l  236 (487)
T 3oja_A          175 NLQYNFIYDV-K-G--------------QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS  236 (487)
T ss_dssp             ECTTSCCCEE-E-C--------------CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred             ecCCCccccc-c-c--------------cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccC
Confidence            5555544321 1 0              234678888888998 67888888999999999999999877 588889999


Q ss_pred             CCCCeEEEecCChh
Q 043839          375 KNLCKLELHWPQPH  388 (415)
Q Consensus       375 ~~L~~L~l~~c~~~  388 (415)
                      ++|+.|++++|+-.
T Consensus       237 ~~L~~L~l~~N~l~  250 (487)
T 3oja_A          237 QNLEHFDLRGNGFH  250 (487)
T ss_dssp             TTCCEEECTTCCBC
T ss_pred             CCCCEEEcCCCCCc
Confidence            99999999998753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.75  E-value=1.1e-19  Score=179.36  Aligned_cols=275  Identities=16%  Similarity=0.100  Sum_probs=148.5

Q ss_pred             ceeEEEEEeCCCCC-----ccCCCC--CCceeEEEeecCCCccccccchHHHhccCC----cccEEEcCCcccc-----c
Q 043839          101 NVKRCFILKDLTEF-----FPLEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFK----HLRVLNLGSAVLD-----L  164 (415)
Q Consensus       101 ~~r~l~l~~~~~~~-----~~~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~-----~  164 (415)
                      .++.+.+. ++...     .++...  +++|++|.+.++...   .......+..++    +|++|++++|.++     .
T Consensus        29 ~L~~L~L~-~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  104 (461)
T 1z7x_W           29 QCQVVRLD-DCGLTEARCKDISSALRVNPALAELNLRSNELG---DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  104 (461)
T ss_dssp             TCSEEEEE-SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH---HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             CccEEEcc-CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC---hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence            45666666 55443     122222  577777777776652   112223334444    5777777777766     3


Q ss_pred             CcccccCccCCceEecCcccc-------------cccccCcEEEecCCCCCCC----CCCcccCccccceeccccCC--C
Q 043839          165 YPPGLENLFHLKYLKLITPLL-------------KLMQKLMHLNFGSITMPSP----PNNYSSSLKDLIFISAVHPS--S  225 (415)
Q Consensus       165 lp~~i~~l~~L~~L~l~~~~i-------------~~l~~L~~L~l~~~~~~~~----~p~~i~~l~~L~~L~l~~~~--~  225 (415)
                      +|..+..+++|++|++++..+             ...++|++|++++|.+...    ++..+..+++|++|++.++.  .
T Consensus       105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE  184 (461)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence            466677777777777777111             1234677777775554432    23445556777777777765  1


Q ss_pred             CCccccC-----CCCCCCeEEEecccCcchh----cHHHhhhccCCCcEEEeecCccc----cccccccc-CCCCCCCCc
Q 043839          226 CTPDILG-----RLPNVQTLRISGDLSYHHS----GVSKSLCELHKLECLKLVNEGKM----WQFSRMIL-SEYKFPPTL  291 (415)
Q Consensus       226 ~~~~~l~-----~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~i----l~~l~Llp-~~~~lp~~L  291 (415)
                      ..+..+.     ..++|++|++++|.  ...    .++..+..+++|+.|++++ +.+    +..  +.+ ....+ ++|
T Consensus       185 ~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~--l~~~~~~~~-~~L  258 (461)
T 1z7x_W          185 AGVRVLCQGLKDSPCQLEALKLESCG--VTSDNCRDLCGIVASKASLRELALGS-NKLGDVGMAE--LCPGLLHPS-SRL  258 (461)
T ss_dssp             HHHHHHHHHHHHSCCCCCEEECTTSC--CBTTHHHHHHHHHHHCTTCCEEECCS-SBCHHHHHHH--HHHHHTSTT-CCC
T ss_pred             HHHHHHHHHHhcCCCCceEEEccCCC--CcHHHHHHHHHHHHhCCCccEEeccC-CcCChHHHHH--HHHHHhcCC-CCc
Confidence            1111121     24567777777763  222    2556666677777777766 311    000  012 22234 556


Q ss_pred             eEEEEEccccCCC----CchhhcCCCCCCeEeecc---------------CC----------------------------
Q 043839          292 TQLSLSNTKLMED----PMPTLEKLPLLEVLKLKQ---------------NS----------------------------  324 (415)
Q Consensus       292 ~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~---------------~~----------------------------  324 (415)
                      ++|++++|.++..    ++..+..+++|+.|++++               ..                            
T Consensus       259 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  338 (461)
T 1z7x_W          259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA  338 (461)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred             eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh
Confidence            6666666655432    234444555555555554               11                            


Q ss_pred             CCCcccEEEeccCCCccce-EEcC----C-CccCccEEEEecCcccC----CChhhhcCCCCCCeEEEecCC
Q 043839          325 SFPLLKILHLKSMLWLEEW-TMGA----G-SMPKLESLILNPCAYLR----KLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       325 ~~~~L~~L~l~~~~~l~~l-~~~~----~-~l~~L~~L~l~~c~~~~----~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      .+++|++|++++| .++.. +..+    . ..++|++|++++|....    .+|..+..+++|++|++++|+
T Consensus       339 ~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          339 QNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             hCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            1245555555555 22211 1111    1 15577777777776553    566666677777777777775

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.75  E-value=1.5e-17  Score=163.34  Aligned_cols=209  Identities=18%  Similarity=0.126  Sum_probs=174.5

Q ss_pred             CCCceeEEEEEeCCCCCccCC-CC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcc-cccCcc
Q 043839           98 SLANVKRCFILKDLTEFFPLE-HS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPP-GLENLF  173 (415)
Q Consensus        98 ~~~~~r~l~l~~~~~~~~~~~-~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~  173 (415)
                      .+..++.+.+. ++....+.. .+  +++|++|.+.++..    ..+.+..|.++++|++|++++|.++.+|. .+..++
T Consensus        62 ~~~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  136 (440)
T 3zyj_A           62 ISTNTRLLNLH-ENQIQIIKVNSFKHLRHLEILQLSRNHI----RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS  136 (440)
T ss_dssp             CCTTCSEEECC-SCCCCEECTTTTSSCSSCCEEECCSSCC----CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred             CCCCCcEEEcc-CCcCCeeCHHHhhCCCCCCEEECCCCcC----CccChhhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence            45678889998 777765553 33  89999999999987    55666789999999999999999997775 588999


Q ss_pred             CCceEecCc--------ccccccccCcEEEecCCCCCCCCCC-cccCccccceeccccCC-CCCccccCCCCCCCeEEEe
Q 043839          174 HLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNN-YSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRIS  243 (415)
Q Consensus       174 ~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~  243 (415)
                      +|++|++++        ..+.++++|++|+++++.....++. .+..+++|++|++.++. ..+| .+..+++|+.|+++
T Consensus       137 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls  215 (440)
T 3zyj_A          137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLS  215 (440)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECT
T ss_pred             cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECC
Confidence            999999998        3577899999999997666666665 58899999999999999 6665 48899999999999


Q ss_pred             cccCcchhcHHHhhhccCCCcEEEeecCccccccccc--c-c-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEe
Q 043839          244 GDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--I-L-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLK  319 (415)
Q Consensus       244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--l-p-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~  319 (415)
                      +|  ...+..+..+..+++|+.|++++ +      ++  + | .+..+ ++|+.|++++|.++...+..+..+++|+.|+
T Consensus       216 ~N--~l~~~~~~~~~~l~~L~~L~L~~-n------~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  285 (440)
T 3zyj_A          216 GN--HLSAIRPGSFQGLMHLQKLWMIQ-S------QIQVIERNAFDNL-QSLVEINLAHNNLTLLPHDLFTPLHHLERIH  285 (440)
T ss_dssp             TS--CCCEECTTTTTTCTTCCEEECTT-C------CCCEECTTSSTTC-TTCCEEECTTSCCCCCCTTTTSSCTTCCEEE
T ss_pred             CC--ccCccChhhhccCccCCEEECCC-C------ceeEEChhhhcCC-CCCCEEECCCCCCCccChhHhccccCCCEEE
Confidence            98  46666678889999999999988 5      33  3 4 77888 9999999999999877777788899999999


Q ss_pred             ecc
Q 043839          320 LKQ  322 (415)
Q Consensus       320 l~~  322 (415)
                      +++
T Consensus       286 L~~  288 (440)
T 3zyj_A          286 LHH  288 (440)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            876

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.74  E-value=1.8e-18  Score=162.00  Aligned_cols=194  Identities=20%  Similarity=0.232  Sum_probs=100.3

Q ss_pred             cCCcccEEEcCCcccc-cCcccc--cCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCc-----cccceec
Q 043839          148 KFKHLRVLNLGSAVLD-LYPPGL--ENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSL-----KDLIFIS  219 (415)
Q Consensus       148 ~~~~L~~L~l~~~~~~-~lp~~i--~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l-----~~L~~L~  219 (415)
                      ++++|++|++++|.++ .+|..+  ..+++|++|++++                |.+... |..++.+     ++|++|+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~----------------N~l~~~-~~~~~~l~~~~~~~L~~L~  155 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN----------------VSWATR-DAWLAELQQWLKPGLKVLS  155 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEES----------------CBCSSS-SSHHHHHHTTCCTTCCEEE
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccC----------------CCCcch-hHHHHHHHHhhcCCCcEEE
Confidence            4555555555555555 455443  4444555555444                333332 4444444     4555555


Q ss_pred             cccCC-CCCc-cccCCCCCCCeEEEecccCcchhc--HHHhh--hccCCCcEEEeecCccccccccccc--CCCCCCCCc
Q 043839          220 AVHPS-SCTP-DILGRLPNVQTLRISGDLSYHHSG--VSKSL--CELHKLECLKLVNEGKMWQFSRMIL--SEYKFPPTL  291 (415)
Q Consensus       220 l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~il~~l~Llp--~~~~lp~~L  291 (415)
                      +.++. ..++ ..++.+++|++|++++|  ...+.  ++..+  ..+++|+.|++++ +.+-. +.-++  .+..+ ++|
T Consensus       156 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~-~~~~~~~~~~~l-~~L  230 (312)
T 1wwl_A          156 IAQAHSLNFSCEQVRVFPALSTLDLSDN--PELGERGLISALCPLKFPTLQVLALRN-AGMET-PSGVCSALAAAR-VQL  230 (312)
T ss_dssp             EESCSCCCCCTTTCCCCSSCCEEECCSC--TTCHHHHHHHHSCTTSCTTCCEEECTT-SCCCC-HHHHHHHHHHTT-CCC
T ss_pred             eeCCCCccchHHHhccCCCCCEEECCCC--CcCcchHHHHHHHhccCCCCCEEECCC-CcCcc-hHHHHHHHHhcC-CCC
Confidence            55554 2222 44455555555555554  12221  22333  4445555555544 21100 00011  12234 455


Q ss_pred             eEEEEEccccCCCCc-hhhcCCCCCCeEeecc-------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcc
Q 043839          292 TQLSLSNTKLMEDPM-PTLEKLPLLEVLKLKQ-------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAY  363 (415)
Q Consensus       292 ~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~-------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~  363 (415)
                      ++|++++|.+.+..+ ..+..+++|++|++++       ...+++|++|++++| .++.+|. +..+++|+.|++++|+.
T Consensus       231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred             CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCC
Confidence            555555555544332 3334455555555554       111267889999998 6777776 89999999999999987


Q ss_pred             cC
Q 043839          364 LR  365 (415)
Q Consensus       364 ~~  365 (415)
                      .+
T Consensus       309 ~~  310 (312)
T 1wwl_A          309 LD  310 (312)
T ss_dssp             TC
T ss_pred             CC
Confidence            64

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.74  E-value=2.4e-17  Score=162.37  Aligned_cols=209  Identities=19%  Similarity=0.149  Sum_probs=173.8

Q ss_pred             CCCceeEEEEEeCCCCCccCC-CC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCccc-ccCcc
Q 043839           98 SLANVKRCFILKDLTEFFPLE-HS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPG-LENLF  173 (415)
Q Consensus        98 ~~~~~r~l~l~~~~~~~~~~~-~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~  173 (415)
                      .+..++.+.+. ++....+.. .+  +++|+.|.+.++..    ..+.+..|.++++|++|++++|.++.+|.. +..++
T Consensus        73 ~~~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  147 (452)
T 3zyi_A           73 IPSNTRYLNLM-ENNIQMIQADTFRHLHHLEVLQLGRNSI----RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS  147 (452)
T ss_dssp             CCTTCSEEECC-SSCCCEECTTTTTTCTTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred             CCCCccEEECc-CCcCceECHHHcCCCCCCCEEECCCCcc----CCcChhhccCcccCCEEECCCCcCCccChhhhcccC
Confidence            35678999998 777765543 33  99999999999987    556667899999999999999999977654 78899


Q ss_pred             CCceEecCc--------ccccccccCcEEEecCCCCCCCCCC-cccCccccceeccccCC-CCCccccCCCCCCCeEEEe
Q 043839          174 HLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNN-YSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRIS  243 (415)
Q Consensus       174 ~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~  243 (415)
                      +|++|++++        ..+.++++|++|+++++.....++. .+..+++|++|++.++. ..+| .+..+++|+.|+++
T Consensus       148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls  226 (452)
T 3zyi_A          148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMS  226 (452)
T ss_dssp             TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECT
T ss_pred             CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECc
Confidence            999999998        4577899999999997677666665 48899999999999999 5554 58899999999999


Q ss_pred             cccCcchhcHHHhhhccCCCcEEEeecCccccccccc---cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEe
Q 043839          244 GDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM---IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLK  319 (415)
Q Consensus       244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L---lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~  319 (415)
                      +|  ...+..+..+..+++|+.|++++ +      ++   .| .+..+ ++|+.|++++|.++...+..+..+++|+.|+
T Consensus       227 ~N--~l~~~~~~~~~~l~~L~~L~L~~-n------~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  296 (452)
T 3zyi_A          227 GN--HFPEIRPGSFHGLSSLKKLWVMN-S------QVSLIERNAFDGL-ASLVELNLAHNNLSSLPHDLFTPLRYLVELH  296 (452)
T ss_dssp             TS--CCSEECGGGGTTCTTCCEEECTT-S------CCCEECTTTTTTC-TTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred             CC--cCcccCcccccCccCCCEEEeCC-C------cCceECHHHhcCC-CCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence            98  56666688899999999999988 5      33   34 78888 9999999999998876677788888999888


Q ss_pred             ecc
Q 043839          320 LKQ  322 (415)
Q Consensus       320 l~~  322 (415)
                      +++
T Consensus       297 L~~  299 (452)
T 3zyi_A          297 LHH  299 (452)
T ss_dssp             CCS
T ss_pred             ccC
Confidence            876

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.74  E-value=1.5e-18  Score=176.76  Aligned_cols=261  Identities=13%  Similarity=0.089  Sum_probs=160.6

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc-----------ccccccc
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT-----------PLLKLMQ  189 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-----------~~i~~l~  189 (415)
                      +++|++|.+.++.........++..+.++++|++|++++|.+..+|..+.++++|++|+++.           ..+..++
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~  270 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR  270 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence            44555555544443210012334445666777777777766666666666666777776653           2445566


Q ss_pred             cCcEEEecCCCCCCCCCCcccCccccceeccccCC---CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEE
Q 043839          190 KLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS---SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECL  266 (415)
Q Consensus       190 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L  266 (415)
                      +|+.|++. ......+|..+..+++|++|++.+|.   ..+...+..+++|++|++.++  .....++.....+++|+.|
T Consensus       271 ~L~~L~l~-~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          271 KLCRLGLS-YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             TCCEEEET-TCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEE
T ss_pred             cccccCcc-ccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEE
Confidence            67777776 34455667777778888888888876   222334577888888888754  3334444455667778888


Q ss_pred             Eeec----------Cccc--------------cccccc--------cc-CCC-CCCCCceEEEEEc----cccCCC----
Q 043839          267 KLVN----------EGKM--------------WQFSRM--------IL-SEY-KFPPTLTQLSLSN----TKLMED----  304 (415)
Q Consensus       267 ~l~~----------~~~i--------------l~~l~L--------lp-~~~-~lp~~L~~L~l~~----~~l~~~----  304 (415)
                      +++.          ++.+              |+.|.+        .+ .+. .+ ++|++|++++    +.+++.    
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL-KNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC-CSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC-CCCcEEEEeecCCCccccCchHHH
Confidence            8872          1221              111111        11 222 25 6778888863    344332    


Q ss_pred             -CchhhcCCCCCCeEeec---c----------CCCCCcccEEEeccCCCcc--ceEEcCCCccCccEEEEecCcccCC-C
Q 043839          305 -PMPTLEKLPLLEVLKLK---Q----------NSSFPLLKILHLKSMLWLE--EWTMGAGSMPKLESLILNPCAYLRK-L  367 (415)
Q Consensus       305 -~~~~l~~l~~L~~L~l~---~----------~~~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~~~~-l  367 (415)
                       .+..+..+++|+.|+++   +          ...+++|++|++++|. ++  .++..+.++++|+.|++++|+.... +
T Consensus       427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  505 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAI  505 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence             22335568888888883   2          2347788888888884 43  3444567889999999999985432 4


Q ss_pred             hhhhcCCCCCCeEEEecCC
Q 043839          368 PEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       368 p~~l~~l~~L~~L~l~~c~  386 (415)
                      +..+..+++|++|++++|+
T Consensus       506 ~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          506 AAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHHHHCSSCCEEEEESCB
T ss_pred             HHHHHhcCccCeeECcCCc
Confidence            5555678999999999987

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.74  E-value=4.5e-18  Score=167.41  Aligned_cols=151  Identities=19%  Similarity=0.181  Sum_probs=92.0

Q ss_pred             CcccEEEcCCcccccCcccccCccCCceEecCc---cccccc-ccCcEEEecCCCCCCCCCCcccCccccceeccccCC-
Q 043839          150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT---PLLKLM-QKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-  224 (415)
Q Consensus       150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~---~~i~~l-~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-  224 (415)
                      ++|++|++++|.++.+|..   +.+|++|++++   ..+..+ ++|++|++++|.+. .+| .++.+++|++|++.++. 
T Consensus        91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l  165 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSL  165 (454)
T ss_dssp             TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCC
T ss_pred             CCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcC
Confidence            5677777777777666643   36777777777   223333 57888888855554 477 58888888888888887 


Q ss_pred             CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEccccCCC
Q 043839          225 SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMED  304 (415)
Q Consensus       225 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~  304 (415)
                      ..+|..+   ++|++|++++|.  . ..+| .++.+++|+.|++++ +.+-.    +|   ..|++|++|++++|.+. .
T Consensus       166 ~~lp~~~---~~L~~L~L~~n~--l-~~l~-~~~~l~~L~~L~l~~-N~l~~----l~---~~~~~L~~L~l~~n~l~-~  229 (454)
T 1jl5_A          166 KKLPDLP---PSLEFIAAGNNQ--L-EELP-ELQNLPFLTAIYADN-NSLKK----LP---DLPLSLESIVAGNNILE-E  229 (454)
T ss_dssp             SCCCCCC---TTCCEEECCSSC--C-SSCC-CCTTCTTCCEEECCS-SCCSS----CC---CCCTTCCEEECCSSCCS-S
T ss_pred             cccCCCc---ccccEEECcCCc--C-CcCc-cccCCCCCCEEECCC-CcCCc----CC---CCcCcccEEECcCCcCC-c
Confidence            5555443   478888888872  2 2344 577788888888877 31100    11   11245555555555543 2


Q ss_pred             CchhhcCCCCCCeEeecc
Q 043839          305 PMPTLEKLPLLEVLKLKQ  322 (415)
Q Consensus       305 ~~~~l~~l~~L~~L~l~~  322 (415)
                      +| .++.+++|++|++++
T Consensus       230 lp-~~~~l~~L~~L~l~~  246 (454)
T 1jl5_A          230 LP-ELQNLPFLTTIYADN  246 (454)
T ss_dssp             CC-CCTTCTTCCEEECCS
T ss_pred             cc-ccCCCCCCCEEECCC
Confidence            33 244555555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.74  E-value=2.6e-17  Score=151.24  Aligned_cols=193  Identities=21%  Similarity=0.189  Sum_probs=150.7

Q ss_pred             cCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCc-ccccCccCCceEecCc--------cccc
Q 043839          116 PLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYP-PGLENLFHLKYLKLIT--------PLLK  186 (415)
Q Consensus       116 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~--------~~i~  186 (415)
                      ++....+++++|.+.++..    ..+.+..+.++++|++|++++|.++.++ ..+.++++|++|++++        ..++
T Consensus        22 ip~~l~~~l~~L~ls~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (276)
T 2z62_A           22 IPDNLPFSTKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS   97 (276)
T ss_dssp             CCSSSCTTCCEEECTTCCC----CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             cCCCCCCCccEEECCCCcc----cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence            4554467899999999887    4555567899999999999999998554 4788999999999998        4578


Q ss_pred             ccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-C--CCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCC
Q 043839          187 LMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-S--CTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKL  263 (415)
Q Consensus       187 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L  263 (415)
                      ++++|++|++++|......+..++.+++|++|++.++. .  .+|..++.+++|++|++++|  ...+..+..+..+++|
T Consensus        98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L  175 (276)
T 2z62_A           98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN--KIQSIYCTDLRVLHQM  175 (276)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS--CCCEECGGGGHHHHTC
T ss_pred             CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC--CCCcCCHHHhhhhhhc
Confidence            89999999999776666555579999999999999998 3  36889999999999999998  4444444556666666


Q ss_pred             c----EEEeecCccccccccc--cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc
Q 043839          264 E----CLKLVNEGKMWQFSRM--IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ  322 (415)
Q Consensus       264 ~----~L~l~~~~~il~~l~L--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  322 (415)
                      +    .|++++ +      ++  +| ..... .+|+.|++++|.+++..+..++.+++|+.|++++
T Consensus       176 ~~l~l~L~ls~-n------~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          176 PLLNLSLDLSL-N------PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             TTCCEEEECCS-S------CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred             cccceeeecCC-C------cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence            6    788877 4      22  55 44555 6899999999998766555667777777776654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.73  E-value=7.3e-20  Score=180.65  Aligned_cols=277  Identities=15%  Similarity=0.010  Sum_probs=193.4

Q ss_pred             ceeEEEEEeCCCCC-----ccCCCC--CCceeEEEeecCCCcccccc-chHHHhccCCcccEEEcCCccccc-----Ccc
Q 043839          101 NVKRCFILKDLTEF-----FPLEHS--DMYLQSFLNHSSESDHLAGI-DCENFCKKFKHLRVLNLGSAVLDL-----YPP  167 (415)
Q Consensus       101 ~~r~l~l~~~~~~~-----~~~~~~--~~~Lr~L~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~-----lp~  167 (415)
                      .++.+.+. ++...     .++...  +++|++|.+.++........ +........++|++|++++|.++.     ++.
T Consensus        86 ~L~~L~L~-~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  164 (461)
T 1z7x_W           86 KIQKLSLQ-NCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  164 (461)
T ss_dssp             CCCEEECT-TSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ceeEEEcc-CCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence            57788887 66544     223333  78999999988876320001 111123346679999999998772     456


Q ss_pred             cccCccCCceEecCc--------cccc-----ccccCcEEEecCCCCCCC----CCCcccCccccceeccccCC-CC---
Q 043839          168 GLENLFHLKYLKLIT--------PLLK-----LMQKLMHLNFGSITMPSP----PNNYSSSLKDLIFISAVHPS-SC---  226 (415)
Q Consensus       168 ~i~~l~~L~~L~l~~--------~~i~-----~l~~L~~L~l~~~~~~~~----~p~~i~~l~~L~~L~l~~~~-~~---  226 (415)
                      .+..+++|++|++++        ..+.     ..++|++|++++|.+...    ++..+..+++|++|++.++. ..   
T Consensus       165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  244 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM  244 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence            667788999999998        1122     255899999997765543    56667788999999999987 11   


Q ss_pred             --Cccc-cCCCCCCCeEEEecccCcchh----cHHHhhhccCCCcEEEeecCccc----cccccccc-CCC-CCCCCceE
Q 043839          227 --TPDI-LGRLPNVQTLRISGDLSYHHS----GVSKSLCELHKLECLKLVNEGKM----WQFSRMIL-SEY-KFPPTLTQ  293 (415)
Q Consensus       227 --~~~~-l~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~i----l~~l~Llp-~~~-~lp~~L~~  293 (415)
                        +... ...+++|++|++++|.  ...    .++..+..+++|+.|++++ +.+    ...   ++ .+. .. ++|++
T Consensus       245 ~~l~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~---l~~~l~~~~-~~L~~  317 (461)
T 1z7x_W          245 AELCPGLLHPSSRLRTLWIWECG--ITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARL---LCETLLEPG-CQLES  317 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSC--CCHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHHH---HHHHHTSTT-CCCCE
T ss_pred             HHHHHHHhcCCCCceEEECcCCC--CCHHHHHHHHHHHhhCCCcceEECCC-CCCchHHHHH---HHHHhccCC-cccee
Confidence              2222 3468999999999983  333    2677888899999999998 522    000   22 222 33 69999


Q ss_pred             EEEEccccCCC----CchhhcCCCCCCeEeecc---------------CCCCCcccEEEeccCCCcc-----ceEEcCCC
Q 043839          294 LSLSNTKLMED----PMPTLEKLPLLEVLKLKQ---------------NSSFPLLKILHLKSMLWLE-----EWTMGAGS  349 (415)
Q Consensus       294 L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~---------------~~~~~~L~~L~l~~~~~l~-----~l~~~~~~  349 (415)
                      |++++|.+++.    .+..+..+++|+.|++++               ....++|++|++++| .++     .++..+..
T Consensus       318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~  396 (461)
T 1z7x_W          318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLA  396 (461)
T ss_dssp             EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHH
T ss_pred             eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHh
Confidence            99999998765    456677889999999987               122679999999999 455     67777788


Q ss_pred             ccCccEEEEecCcccCC----Chhhhc-CCCCCCeEEEecCC
Q 043839          350 MPKLESLILNPCAYLRK----LPEELW-CIKNLCKLELHWPQ  386 (415)
Q Consensus       350 l~~L~~L~l~~c~~~~~----lp~~l~-~l~~L~~L~l~~c~  386 (415)
                      +++|++|++++|+....    +...+. ...+|+.|++.++.
T Consensus       397 ~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~  438 (461)
T 1z7x_W          397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY  438 (461)
T ss_dssp             CCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence            99999999999986542    122232 24578888887754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.72  E-value=1.2e-18  Score=164.62  Aligned_cols=173  Identities=17%  Similarity=0.223  Sum_probs=104.5

Q ss_pred             HHhccC--CcccEEEcCCcccccCcccccCccCCceEecCc---------ccccccccCcEEEecCCCCCCCCCCcccCc
Q 043839          144 NFCKKF--KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT---------PLLKLMQKLMHLNFGSITMPSPPNNYSSSL  212 (415)
Q Consensus       144 ~~~~~~--~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~---------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l  212 (415)
                      ..+..+  +++++|+++++.+...+..+..+++|++|++++         ..+..+++|++|++++|......|..++.+
T Consensus        62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~  141 (336)
T 2ast_B           62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN  141 (336)
T ss_dssp             HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred             HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence            344444  667777777776664444556666777777666         234556677777777565555566666677


Q ss_pred             cccceeccccCC--C--CCccccCCCCCCCeEEEecccCcchhcHHHhhhccC-CCcEEEeecCcc--cc-ccccccc-C
Q 043839          213 KDLIFISAVHPS--S--CTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELH-KLECLKLVNEGK--MW-QFSRMIL-S  283 (415)
Q Consensus       213 ~~L~~L~l~~~~--~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~--il-~~l~Llp-~  283 (415)
                      ++|++|++.+|.  .  .++..+..+++|++|++++|..-....++..+..++ +|+.|++++ +.  +- ..   +| .
T Consensus       142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~-~~~~~~~~~---l~~~  217 (336)
T 2ast_B          142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG-YRKNLQKSD---LSTL  217 (336)
T ss_dssp             TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS-CGGGSCHHH---HHHH
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC-CcccCCHHH---HHHH
Confidence            777777777773  2  355556677777777777762122223566666777 777777766 20  00 00   34 4


Q ss_pred             CCCCCCCceEEEEEccc-cCCCCchhhcCCCCCCeEeec
Q 043839          284 EYKFPPTLTQLSLSNTK-LMEDPMPTLEKLPLLEVLKLK  321 (415)
Q Consensus       284 ~~~lp~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~  321 (415)
                      +..+ ++|++|++++|. +++..+..++.+++|+.|+++
T Consensus       218 ~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~  255 (336)
T 2ast_B          218 VRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS  255 (336)
T ss_dssp             HHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             HhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence            4556 777777777776 555555566655555555553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.71  E-value=6.1e-17  Score=149.85  Aligned_cols=96  Identities=21%  Similarity=0.207  Sum_probs=51.7

Q ss_pred             hccCCcccEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccce
Q 043839          146 CKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIF  217 (415)
Q Consensus       146 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~  217 (415)
                      +.++++++.++++++.++.+|..+.  +++++|++++        ..+.++++|++|++++|.+ ..++.. +.+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CCCCcCCE
Confidence            5667778888888887777776553  4566666555        2344445555555553322 222221 44455555


Q ss_pred             eccccCC-CCCccccCCCCCCCeEEEecc
Q 043839          218 ISAVHPS-SCTPDILGRLPNVQTLRISGD  245 (415)
Q Consensus       218 L~l~~~~-~~~~~~l~~l~~L~~L~l~~~  245 (415)
                      |+++++. ..+|..+..+++|+.|++++|
T Consensus        82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N  110 (290)
T 1p9a_G           82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN  110 (290)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred             EECCCCcCCcCchhhccCCCCCEEECCCC
Confidence            5555554 444444445555555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.71  E-value=1.3e-16  Score=146.19  Aligned_cols=194  Identities=20%  Similarity=0.191  Sum_probs=101.2

Q ss_pred             CcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCc
Q 043839          150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTP  228 (415)
Q Consensus       150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~  228 (415)
                      ...+.++++++.++.+|..+.  .+|++|++++                |.+....+..++.+++|++|++.++. ..++
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~----------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQS----------------NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC--TTCSEEECCS----------------SCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CCCCEEEccCCCCCccCCCCC--CCCCEEECcC----------------CCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            357788888888888876553  3455554443                33333233345555555555555555 3333


Q ss_pred             cc-cCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCC
Q 043839          229 DI-LGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLME  303 (415)
Q Consensus       229 ~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~  303 (415)
                      .. +..+++|++|+++++  ......+..+..+++|+.|++++ +      ++  +|  .+..+ ++|++|++++|.++.
T Consensus        78 ~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~-n------~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~  147 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDN--KLQALPIGVFDQLVNLAELRLDR-N------QLKSLPPRVFDSL-TKLTYLSLGYNELQS  147 (270)
T ss_dssp             TTTTSSCTTCCEEECCSS--CCCCCCTTTTTTCSSCCEEECCS-S------CCCCCCTTTTTTC-TTCCEEECCSSCCCC
T ss_pred             hhhhcCCCCCCEEECCCC--cCCcCCHhHcccccCCCEEECCC-C------ccCeeCHHHhCcC-cCCCEEECCCCcCCc
Confidence            32 345555555555555  22222222334455555555554 2      11  23  34556 666666666666654


Q ss_pred             CCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEE-cCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEE
Q 043839          304 DPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTM-GAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLEL  382 (415)
Q Consensus       304 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l  382 (415)
                      ..+..++.+++|+              +|++++| .++.++. .+..+++|+.|++++|......+..+..+++|+.|++
T Consensus       148 ~~~~~~~~l~~L~--------------~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  212 (270)
T 2o6q_A          148 LPKGVFDKLTSLK--------------ELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL  212 (270)
T ss_dssp             CCTTTTTTCTTCC--------------EEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cCHhHccCCcccc--------------eeEecCC-cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence            4333444444443              3344444 3444443 3556666666666666554322234556666666666


Q ss_pred             ecCC
Q 043839          383 HWPQ  386 (415)
Q Consensus       383 ~~c~  386 (415)
                      +++|
T Consensus       213 ~~N~  216 (270)
T 2o6q_A          213 QENP  216 (270)
T ss_dssp             CSSC
T ss_pred             cCCC
Confidence            6554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=1.2e-18  Score=168.05  Aligned_cols=220  Identities=15%  Similarity=0.129  Sum_probs=139.7

Q ss_pred             HHHhccCCcccEEEcCCcccc-c----CcccccCccCCceEecCc------------------ccccccccCcEEEecCC
Q 043839          143 ENFCKKFKHLRVLNLGSAVLD-L----YPPGLENLFHLKYLKLIT------------------PLLKLMQKLMHLNFGSI  199 (415)
Q Consensus       143 ~~~~~~~~~L~~L~l~~~~~~-~----lp~~i~~l~~L~~L~l~~------------------~~i~~l~~L~~L~l~~~  199 (415)
                      ...+..+++|++|++++|.++ .    ++..+..+++|++|++++                  ..+.++++|++|++++|
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            344566667777777777665 2    333355666666666654                  12356778888888866


Q ss_pred             CCCC----CCCCcccCccccceeccccCC------CCCccccCCC---------CCCCeEEEecccCcch-hcHH---Hh
Q 043839          200 TMPS----PPNNYSSSLKDLIFISAVHPS------SCTPDILGRL---------PNVQTLRISGDLSYHH-SGVS---KS  256 (415)
Q Consensus       200 ~~~~----~~p~~i~~l~~L~~L~l~~~~------~~~~~~l~~l---------~~L~~L~l~~~~~~~~-~~~~---~~  256 (415)
                      .+..    .+|..+..+++|++|++.+|.      ..++..+..+         ++|++|++++|.  .. ..++   ..
T Consensus       105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~~~  182 (386)
T 2ca6_A          105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR--LENGSMKEWAKT  182 (386)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC--CTGGGHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC--CCcHHHHHHHHH
Confidence            6655    356667778888888888877      1233334444         788888888873  33 3333   56


Q ss_pred             hhccCCCcEEEeecCccccc-cc-cccc-CCCCCCCCceEEEEEccccC----CCCchhhcCCCCCCeEeecc-------
Q 043839          257 LCELHKLECLKLVNEGKMWQ-FS-RMIL-SEYKFPPTLTQLSLSNTKLM----EDPMPTLEKLPLLEVLKLKQ-------  322 (415)
Q Consensus       257 l~~l~~L~~L~l~~~~~il~-~l-~Llp-~~~~lp~~L~~L~l~~~~l~----~~~~~~l~~l~~L~~L~l~~-------  322 (415)
                      +..+++|+.|++++ +.+-. .+ .++| .+..+ ++|++|++++|.++    ..++..+..+++|+.|++++       
T Consensus       183 l~~~~~L~~L~L~~-n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~  260 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQ-NGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  260 (386)
T ss_dssp             HHHCTTCCEEECCS-SCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             HHhCCCcCEEECcC-CCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence            77788888888887 42100 00 0144 66677 88888888888774    34566677777777777765       


Q ss_pred             ---------CCCCCcccEEEeccCCCccc-----eEEcC-CCccCccEEEEecCcccCCC
Q 043839          323 ---------NSSFPLLKILHLKSMLWLEE-----WTMGA-GSMPKLESLILNPCAYLRKL  367 (415)
Q Consensus       323 ---------~~~~~~L~~L~l~~~~~l~~-----l~~~~-~~l~~L~~L~l~~c~~~~~l  367 (415)
                               .+.+++|++|++++|. ++.     +|..+ ..+++|+.|++++|+..+..
T Consensus       261 ~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          261 AAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence                     0236677777777773 333     55554 45677777777777766544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.71  E-value=8.9e-17  Score=148.77  Aligned_cols=186  Identities=19%  Similarity=0.186  Sum_probs=130.1

Q ss_pred             ccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CC-CccccCCCCCCCeEEEecccCcchhcHHHhhhccCC
Q 043839          185 LKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SC-TPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHK  262 (415)
Q Consensus       185 i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~  262 (415)
                      +++++++++++++ ++....+|.++.  +++++|++.++. .. .+..+..+++|+.|+++++.   ...++.. +.+++
T Consensus         6 ~~~l~~l~~l~~~-~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~-~~l~~   78 (290)
T 1p9a_G            6 VSKVASHLEVNCD-KRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---LTKLQVD-GTLPV   78 (290)
T ss_dssp             EECSTTCCEEECT-TSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC---CCEEECC-SCCTT
T ss_pred             ccccCCccEEECC-CCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc---cCcccCC-CCCCc
Confidence            4455666666666 333445665553  567777777776 33 34556777777777777762   2222222 56677


Q ss_pred             CcEEEeecCccccccccc--cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc----------CCCCCcc
Q 043839          263 LECLKLVNEGKMWQFSRM--IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLL  329 (415)
Q Consensus       263 L~~L~l~~~~~il~~l~L--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L  329 (415)
                      |+.|++++ +      ++  +| .+..+ ++|++|++++|.++...+..++.+++|+.|++++          ...+++|
T Consensus        79 L~~L~Ls~-N------~l~~l~~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  150 (290)
T 1p9a_G           79 LGTLDLSH-N------QLQSLPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL  150 (290)
T ss_dssp             CCEEECCS-S------CCSSCCCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCEEECCC-C------cCCcCchhhccC-CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence            77777776 4      22  66 66677 7777788777777665566677777788877776          2356788


Q ss_pred             cEEEeccCCCccceEEc-CCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839          330 KILHLKSMLWLEEWTMG-AGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       330 ~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~  387 (415)
                      +.|++++| .++.+|.. +..+++|+.|++++|... .+|.++...++|+.|++.++|.
T Consensus       151 ~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          151 EKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            88888988 67778755 578999999999999776 7898888899999999997663

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.70  E-value=1.6e-16  Score=162.57  Aligned_cols=127  Identities=20%  Similarity=0.186  Sum_probs=90.1

Q ss_pred             CCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCCCceEEEEEccccCCCCchhhcC
Q 043839          233 RLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEK  311 (415)
Q Consensus       233 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~  311 (415)
                      .+++++.++++.+  ......+..+..+++|+.|++++ +.+.+.  +.| .+..+ ++|+.|++++|.+++..+..++.
T Consensus       443 ~l~~l~~l~ls~n--~l~~~~~~~~~~~~~L~~L~Ls~-N~~~~~--~~~~~~~~l-~~L~~L~Ls~N~L~~l~~~~f~~  516 (635)
T 4g8a_A          443 SLRNLIYLDISHT--HTRVAFNGIFNGLSSLEVLKMAG-NSFQEN--FLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNS  516 (635)
T ss_dssp             TCTTCCEEECTTS--CCEECCTTTTTTCTTCCEEECTT-CEEGGG--EECSCCTTC-TTCCEEECTTSCCCEECTTTTTT
T ss_pred             ccccccccccccc--ccccccccccccchhhhhhhhhh-cccccc--cCchhhhhc-cccCEEECCCCccCCcChHHHcC
Confidence            3444444444444  22333344455566667776665 311110  056 78889 99999999999998888889999


Q ss_pred             CCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCc-cCccEEEEecCcccC
Q 043839          312 LPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSM-PKLESLILNPCAYLR  365 (415)
Q Consensus       312 l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l-~~L~~L~l~~c~~~~  365 (415)
                      +++|++|++++          ...+++|++|++++|...+..|..+..+ ++|+.|++++|+...
T Consensus       517 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            99999999998          3567899999999994444445667777 689999999998764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.69  E-value=2.3e-16  Score=160.43  Aligned_cols=233  Identities=15%  Similarity=0.003  Sum_probs=182.0

Q ss_pred             CCceeEEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceE
Q 043839           99 LANVKRCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYL  178 (415)
Q Consensus        99 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  178 (415)
                      +..++.+.+. ++....++. .+++|++|.+.++...    .+..    .+++|++|++++|.++.+|.   .+.+|++|
T Consensus        60 ~~~L~~L~L~-~N~l~~lp~-~l~~L~~L~Ls~N~l~----~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L  126 (622)
T 3g06_A           60 PAHITTLVIP-DNNLTSLPA-LPPELRTLEVSGNQLT----SLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKL  126 (622)
T ss_dssp             CTTCSEEEEC-SCCCSCCCC-CCTTCCEEEECSCCCS----CCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred             CCCCcEEEec-CCCCCCCCC-cCCCCCEEEcCCCcCC----cCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence            4678999999 777665554 4889999999999873    3322    78999999999999998887   57899999


Q ss_pred             ecCccccc----ccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcH
Q 043839          179 KLITPLLK----LMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGV  253 (415)
Q Consensus       179 ~l~~~~i~----~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  253 (415)
                      ++++..+.    .+++|++|++++|.+ ..+|..   +.+|+.|++.++. ..+|   ..+++|+.|++++|.   ...+
T Consensus       127 ~L~~N~l~~lp~~l~~L~~L~Ls~N~l-~~l~~~---~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~---l~~l  196 (622)
T 3g06_A          127 WIFGNQLTSLPVLPPGLQELSVSDNQL-ASLPAL---PSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQ---LASL  196 (622)
T ss_dssp             ECCSSCCSCCCCCCTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC---CSCC
T ss_pred             ECCCCCCCcCCCCCCCCCEEECcCCcC-CCcCCc---cCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCC---CCCC
Confidence            99983332    248999999995544 456653   4678999999998 6677   557999999999983   3334


Q ss_pred             HHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc------CCC
Q 043839          254 SKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ------NSS  325 (415)
Q Consensus       254 ~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~------~~~  325 (415)
                      |.   .+++|+.|++++ |      ++  +|  ..+ ++|+.|++++|.+++ +|   ..+++|+.|++++      ...
T Consensus       197 ~~---~~~~L~~L~L~~-N------~l~~l~--~~~-~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~~  259 (622)
T 3g06_A          197 PT---LPSELYKLWAYN-N------RLTSLP--ALP-SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPML  259 (622)
T ss_dssp             CC---CCTTCCEEECCS-S------CCSSCC--CCC-TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCCC
T ss_pred             CC---ccchhhEEECcC-C------cccccC--CCC-CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCcc
Confidence            33   347899999988 4      22  33  224 899999999999865 44   5679999999998      335


Q ss_pred             CCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhc
Q 043839          326 FPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELW  372 (415)
Q Consensus       326 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~  372 (415)
                      +++|+.|++++| .++.+|..++.+++|+.|++++|+..+..|..+.
T Consensus       260 ~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          260 PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             CTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             cccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            678999999999 7779998899999999999999998876666544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.69  E-value=2e-16  Score=147.66  Aligned_cols=182  Identities=19%  Similarity=0.231  Sum_probs=88.4

Q ss_pred             CCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceecccc
Q 043839          149 FKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVH  222 (415)
Q Consensus       149 ~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~  222 (415)
                      +++|++|+++++.++.+| .+..+++|++|++++      ..+.++++|++|++++|.+ ..++ .++.+++|++|++.+
T Consensus        40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL-KNVS-AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCEEECTT
T ss_pred             cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcC-CCch-hhcCCCCCCEEECCC
Confidence            334444444444444333 233444444444433      1133444455555553332 2232 355666666666666


Q ss_pred             CC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEcc
Q 043839          223 PS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNT  299 (415)
Q Consensus       223 ~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~  299 (415)
                      +. ..++. +..+++|+.|++++|.  .. .++. +..+++|+.|++++ +      ++  ++.+..+ ++|+.|++++|
T Consensus       117 n~l~~~~~-l~~l~~L~~L~l~~n~--l~-~~~~-l~~l~~L~~L~l~~-n------~l~~~~~l~~l-~~L~~L~l~~n  183 (308)
T 1h6u_A          117 TQITDVTP-LAGLSNLQVLYLDLNQ--IT-NISP-LAGLTNLQYLSIGN-A------QVSDLTPLANL-SKLTTLKADDN  183 (308)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCSSC--CC-CCGG-GGGCTTCCEEECCS-S------CCCCCGGGTTC-TTCCEEECCSS
T ss_pred             CCCCCchh-hcCCCCCCEEECCCCc--cC-cCcc-ccCCCCccEEEccC-C------cCCCChhhcCC-CCCCEEECCCC
Confidence            65 33332 5666666666666652  22 2222 55555666666555 3      11  2334455 66666666666


Q ss_pred             ccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCccc
Q 043839          300 KLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYL  364 (415)
Q Consensus       300 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~  364 (415)
                      .+.+. +. +..              +++|++|++++| .++.++ .+..+++|+.|++++|+..
T Consensus       184 ~l~~~-~~-l~~--------------l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          184 KISDI-SP-LAS--------------LPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCCC-GG-GGG--------------CTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEEEEEE
T ss_pred             ccCcC-hh-hcC--------------CCCCCEEEccCC-ccCccc-cccCCCCCCEEEccCCeee
Confidence            65332 11 333              334444444555 344443 2556666666666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.69  E-value=2.1e-18  Score=166.42  Aligned_cols=229  Identities=16%  Similarity=0.069  Sum_probs=172.7

Q ss_pred             cccEEEcCCcccccCcccccCccCCceEecCc------------ccccccccCcEEEecCCCC---CCCCCCcc------
Q 043839          151 HLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------------PLLKLMQKLMHLNFGSITM---PSPPNNYS------  209 (415)
Q Consensus       151 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------------~~i~~l~~L~~L~l~~~~~---~~~~p~~i------  209 (415)
                      .|++..+....+..++..+..+++|++|++++            ..+.++++|++|++++|..   ...+|.++      
T Consensus        10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~   89 (386)
T 2ca6_A           10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA   89 (386)
T ss_dssp             CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence            34444455555667888888999999999999            2366899999999995432   33456555      


Q ss_pred             -cCccccceeccccCC-C-----CCccccCCCCCCCeEEEecccCcchh----cHHHhhhcc---------CCCcEEEee
Q 043839          210 -SSLKDLIFISAVHPS-S-----CTPDILGRLPNVQTLRISGDLSYHHS----GVSKSLCEL---------HKLECLKLV  269 (415)
Q Consensus       210 -~~l~~L~~L~l~~~~-~-----~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l---------~~L~~L~l~  269 (415)
                       ..+++|++|+++++. .     .++..+..+++|++|++++|  ....    .++..+..+         ++|+.|+++
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~  167 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN--GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG  167 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS--CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC--CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence             688999999999998 3     36778889999999999999  3433    334445555         899999999


Q ss_pred             cCccccccccccc----CCCCCCCCceEEEEEccccCCC----Cch-hhcCCCCCCeEeecc--------------CCCC
Q 043839          270 NEGKMWQFSRMIL----SEYKFPPTLTQLSLSNTKLMED----PMP-TLEKLPLLEVLKLKQ--------------NSSF  326 (415)
Q Consensus       270 ~~~~il~~l~Llp----~~~~lp~~L~~L~l~~~~l~~~----~~~-~l~~l~~L~~L~l~~--------------~~~~  326 (415)
                      + +.+-.. . +|    .+..+ ++|++|++++|.++..    ..+ .+..+++|+.|++++              ...+
T Consensus       168 ~-n~l~~~-~-~~~l~~~l~~~-~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~  243 (386)
T 2ca6_A          168 R-NRLENG-S-MKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  243 (386)
T ss_dssp             S-SCCTGG-G-HHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             C-CCCCcH-H-HHHHHHHHHhC-CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence            8 421000 0 22    34467 8999999999988532    233 788999999999987              3567


Q ss_pred             CcccEEEeccCCCccc-----eEEcC--CCccCccEEEEecCcccC----CChhhh-cCCCCCCeEEEecCC
Q 043839          327 PLLKILHLKSMLWLEE-----WTMGA--GSMPKLESLILNPCAYLR----KLPEEL-WCIKNLCKLELHWPQ  386 (415)
Q Consensus       327 ~~L~~L~l~~~~~l~~-----l~~~~--~~l~~L~~L~l~~c~~~~----~lp~~l-~~l~~L~~L~l~~c~  386 (415)
                      ++|++|++++|. ++.     ++..+  +.+++|+.|++++|....    .+|..+ .++++|+.|++++|+
T Consensus       244 ~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          244 PNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             TTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            899999999995 442     34444  459999999999998876    488877 668999999999986

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.68  E-value=6.8e-17  Score=148.15  Aligned_cols=200  Identities=17%  Similarity=0.153  Sum_probs=123.6

Q ss_pred             CcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccC
Q 043839          150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHP  223 (415)
Q Consensus       150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~  223 (415)
                      ..+..+++.++.+... .....+.+|+.|++++      +.++.+++|++|++++|.+.. + ..++.+++|++|++.++
T Consensus        19 ~~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           19 AETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTS
T ss_pred             HHHHHHHhcCcccccc-cccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCC
Confidence            3444556666655433 2345677777777776      456667777777777554432 3 35667777777777777


Q ss_pred             C-CCCc-cccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEE
Q 043839          224 S-SCTP-DILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLS  297 (415)
Q Consensus       224 ~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~  297 (415)
                      . ..++ ..++.+++|++|++++|  ...+..+..+..+++|+.|++++ +      ++  +|  .+..+ ++|+.|+++
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~-n------~l~~~~~~~~~~l-~~L~~L~l~  165 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVEN--QLQSLPDGVFDKLTNLTYLNLAH-N------QLQSLPKGVFDKL-TNLTELDLS  165 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECCS-S------CCCCCCTTTTTTC-TTCCEEECC
T ss_pred             ccCccChhHhcCCcCCCEEECCCC--cCCccCHHHhccCCCCCEEECCC-C------ccCccCHHHhccC-ccCCEEECC
Confidence            6 4333 33567777777777776  33333334456666666666666 3      22  33  34566 666666666


Q ss_pred             ccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEE-cCCCccCccEEEEecCcccCCChhhhcCCCC
Q 043839          298 NTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTM-GAGSMPKLESLILNPCAYLRKLPEELWCIKN  376 (415)
Q Consensus       298 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~  376 (415)
                      +|.+++..+..++.              +++|++|++++| .++.++. .++.+++|+.|++++|+..+.       ++.
T Consensus       166 ~n~l~~~~~~~~~~--------------l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~  223 (272)
T 3rfs_A          166 YNQLQSLPEGVFDK--------------LTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPG  223 (272)
T ss_dssp             SSCCCCCCTTTTTT--------------CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTT
T ss_pred             CCCcCccCHHHhcC--------------CccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCcccc-------CcH
Confidence            66665444433443              456666666777 5565554 478999999999999987754       345


Q ss_pred             CCeEEEec
Q 043839          377 LCKLELHW  384 (415)
Q Consensus       377 L~~L~l~~  384 (415)
                      |+.++++.
T Consensus       224 l~~l~~~~  231 (272)
T 3rfs_A          224 IRYLSEWI  231 (272)
T ss_dssp             THHHHHHH
T ss_pred             HHHHHHHH
Confidence            56555543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.68  E-value=2e-16  Score=147.75  Aligned_cols=183  Identities=17%  Similarity=0.203  Sum_probs=106.0

Q ss_pred             cCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEE
Q 043839          170 ENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRI  242 (415)
Q Consensus       170 ~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l  242 (415)
                      ..+.+|++|++++      +.+..+++|++|++++|.+ ..++. ++.+++|++|++.++. ..++ .+..+++|+.|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI-TDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC-CCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred             HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcC-CCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence            4456666666665      3445555566666653332 23333 5555556666555555 3332 4555555555555


Q ss_pred             ecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEee
Q 043839          243 SGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKL  320 (415)
Q Consensus       243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  320 (415)
                      ++|.  . ..++ .+..+++|+.|++++ +      ++  ++.+..+ ++|+.|++++|.+++ .+. +           
T Consensus       115 ~~n~--l-~~~~-~l~~l~~L~~L~l~~-n------~l~~~~~l~~l-~~L~~L~l~~n~l~~-~~~-l-----------  169 (308)
T 1h6u_A          115 TSTQ--I-TDVT-PLAGLSNLQVLYLDL-N------QITNISPLAGL-TNLQYLSIGNAQVSD-LTP-L-----------  169 (308)
T ss_dssp             TTSC--C-CCCG-GGTTCTTCCEEECCS-S------CCCCCGGGGGC-TTCCEEECCSSCCCC-CGG-G-----------
T ss_pred             CCCC--C-CCch-hhcCCCCCCEEECCC-C------ccCcCccccCC-CCccEEEccCCcCCC-Chh-h-----------
Confidence            5552  1 1122 244555555555554 2      11  2233344 555555555554432 111 2           


Q ss_pred             ccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839          321 KQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       321 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~  387 (415)
                         ..+++|++|++++| .++.++. +..+++|+.|++++|... .++ .+..+++|+.|++++++-
T Consensus       170 ---~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          170 ---ANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             ---TTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEEEEEEE
T ss_pred             ---cCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCCccC-ccc-cccCCCCCCEEEccCCee
Confidence               34566777777887 5666653 789999999999999876 455 388999999999998763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.67  E-value=7.3e-17  Score=164.20  Aligned_cols=237  Identities=15%  Similarity=0.024  Sum_probs=128.8

Q ss_pred             HHhccCCcccEEEcCCcccc-----cCcccccCccCCceEecCc-------ccccccccCcEEEecCCCCC---CCCCCc
Q 043839          144 NFCKKFKHLRVLNLGSAVLD-----LYPPGLENLFHLKYLKLIT-------PLLKLMQKLMHLNFGSITMP---SPPNNY  208 (415)
Q Consensus       144 ~~~~~~~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~---~~~p~~  208 (415)
                      ..+..+++|++|+++++.++     .++..+.++++|++|++++       ..+.++++|++|++++....   ...+..
T Consensus       186 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred             HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence            33444444444444444432     2222233445555555554       22344555555555422111   233445


Q ss_pred             ccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCC
Q 043839          209 SSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYK  286 (415)
Q Consensus       209 i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~  286 (415)
                      ++.+++|+.|.+.++. ..++..+..+++|++|++++|. .....+...+..+++|+.|++.. +-.-.   -++ ....
T Consensus       266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~-~~~~~---~l~~~~~~  340 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN-VIGDR---GLEVLAQY  340 (592)
T ss_dssp             CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG-GGHHH---HHHHHHHH
T ss_pred             hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC-ccCHH---HHHHHHHh
Confidence            6677778877777765 6677777888999999999883 22233445577899999999975 10000   022 2233


Q ss_pred             CCCCceEEEEE------------------------------------ccccCCCCchhhcC-CCCCCeEeecc-------
Q 043839          287 FPPTLTQLSLS------------------------------------NTKLMEDPMPTLEK-LPLLEVLKLKQ-------  322 (415)
Q Consensus       287 lp~~L~~L~l~------------------------------------~~~l~~~~~~~l~~-l~~L~~L~l~~-------  322 (415)
                      + ++|++|+++                                    .+.+++..+..++. +++|+.|++.+       
T Consensus       341 ~-~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l  419 (592)
T 3ogk_B          341 C-KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI  419 (592)
T ss_dssp             C-TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred             C-CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence            4 555555555                                    33333322333332 44444444420       


Q ss_pred             ------------CCCCCcccEEEeccCCC-cc-ceEEc-CCCccCccEEEEecCcccC-CChhhhcCCCCCCeEEEecCC
Q 043839          323 ------------NSSFPLLKILHLKSMLW-LE-EWTMG-AGSMPKLESLILNPCAYLR-KLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       323 ------------~~~~~~L~~L~l~~~~~-l~-~l~~~-~~~l~~L~~L~l~~c~~~~-~lp~~l~~l~~L~~L~l~~c~  386 (415)
                                  ..++++|++|++++|.+ ++ ..+.. ...+++|+.|++++|...+ .++..+..+++|++|++++|+
T Consensus       420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence                        01244555555544321 11 11111 1247788888888887654 455666789999999999997

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.66  E-value=2.8e-17  Score=155.30  Aligned_cols=209  Identities=18%  Similarity=0.141  Sum_probs=135.4

Q ss_pred             cCCcccEEEcCCcccccCcccccCc--cCCceEecCc-------ccccccccCcEEEecCCCCCCC-CCCcccCccccce
Q 043839          148 KFKHLRVLNLGSAVLDLYPPGLENL--FHLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSP-PNNYSSSLKDLIF  217 (415)
Q Consensus       148 ~~~~L~~L~l~~~~~~~lp~~i~~l--~~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~-~p~~i~~l~~L~~  217 (415)
                      .-..++.++++++.+.  |..+..+  .+++.|++++       ..+.++++|++|++++|.+... +|..++.+++|++
T Consensus        45 ~~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           45 DESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             CSTTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             CchhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            3445889999988776  5556666  7888888887       3455678888888886655433 6666778888888


Q ss_pred             eccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCC-CceE
Q 043839          218 ISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPP-TLTQ  293 (415)
Q Consensus       218 L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~-~L~~  293 (415)
                      |++.+|.  ...+..++.+++|++|++++|.......++..+..+++|+.|++++...+-..  -++ .+..+ + +|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~l-~~~L~~  199 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK--HVQVAVAHV-SETITQ  199 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH--HHHHHHHHS-CTTCCE
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH--HHHHHHHhc-ccCCCE
Confidence            8888877  45666777788888888888731122246666778888888888772111000  023 45567 6 8888


Q ss_pred             EEEEcc--ccC-CCCchhhcCCCCCCeEeecc-----------CCCCCcccEEEeccCCCcc-ceEEcCCCccCccEEEE
Q 043839          294 LSLSNT--KLM-EDPMPTLEKLPLLEVLKLKQ-----------NSSFPLLKILHLKSMLWLE-EWTMGAGSMPKLESLIL  358 (415)
Q Consensus       294 L~l~~~--~l~-~~~~~~l~~l~~L~~L~l~~-----------~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l  358 (415)
                      |++++|  .++ ...+..++.+++|+.|++++           ...+++|++|++++|..+. .....++.+++|+.|++
T Consensus       200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  279 (336)
T 2ast_B          200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV  279 (336)
T ss_dssp             EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence            888888  343 23455666777777777765           2344666777776664322 11123556666777777


Q ss_pred             ecC
Q 043839          359 NPC  361 (415)
Q Consensus       359 ~~c  361 (415)
                      ++|
T Consensus       280 ~~~  282 (336)
T 2ast_B          280 FGI  282 (336)
T ss_dssp             TTS
T ss_pred             cCc
Confidence            666

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.66  E-value=1.4e-15  Score=139.14  Aligned_cols=174  Identities=24%  Similarity=0.256  Sum_probs=85.2

Q ss_pred             CcccEEEcCCcccccCcc-cccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCc-ccCccccceeccccCC-CC
Q 043839          150 KHLRVLNLGSAVLDLYPP-GLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNY-SSSLKDLIFISAVHPS-SC  226 (415)
Q Consensus       150 ~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~-~~  226 (415)
                      +++++|+++++.++.+|. .+.++++|++|++++                |.+. .+|.. +..+++|++|++.++. ..
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------------n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~   99 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND----------------NKLQ-TLPAGIFKELKNLETLWVTDNKLQA   99 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS----------------SCCS-CCCTTTTSSCTTCCEEECCSSCCCC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC----------------CccC-eeChhhhcCCCCCCEEECCCCcCCc
Confidence            456666666666664443 344444444444432                2222 22222 2344444444444444 22


Q ss_pred             Cc-cccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEcccc
Q 043839          227 TP-DILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKL  301 (415)
Q Consensus       227 ~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l  301 (415)
                      ++ ..+..+++|++|+++++  ......+..+..+++|+.|++++ +      ++  +|  .+..+ ++|++|++++|.+
T Consensus       100 ~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~-n------~l~~~~~~~~~~l-~~L~~L~L~~n~l  169 (270)
T 2o6q_A          100 LPIGVFDQLVNLAELRLDRN--QLKSLPPRVFDSLTKLTYLSLGY-N------ELQSLPKGVFDKL-TSLKELRLYNNQL  169 (270)
T ss_dssp             CCTTTTTTCSSCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-S------CCCCCCTTTTTTC-TTCCEEECCSSCC
T ss_pred             CCHhHcccccCCCEEECCCC--ccCeeCHHHhCcCcCCCEEECCC-C------cCCccCHhHccCC-cccceeEecCCcC
Confidence            22 22344444444444444  22222223344445555555544 2      11  33  35566 7777777777776


Q ss_pred             CCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEE-cCCCccCccEEEEecCcccC
Q 043839          302 MEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTM-GAGSMPKLESLILNPCAYLR  365 (415)
Q Consensus       302 ~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~~~  365 (415)
                      +...+..+..+++|+              +|++++| .++.++. .+..+++|+.|++++|+...
T Consensus       170 ~~~~~~~~~~l~~L~--------------~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          170 KRVPEGAFDKLTELK--------------TLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             SCCCTTTTTTCTTCC--------------EEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cEeChhHhccCCCcC--------------EEECCCC-cCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            554444454444443              4444555 4555554 35667777777777776543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.64  E-value=9.5e-16  Score=143.24  Aligned_cols=220  Identities=17%  Similarity=0.105  Sum_probs=114.3

Q ss_pred             CCceeEEEeecCCCccccccchHH--HhccCCcccEEEcCCcccc-cCcccc--cCccCCceEecCcccc----------
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCEN--FCKKFKHLRVLNLGSAVLD-LYPPGL--ENLFHLKYLKLITPLL----------  185 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~lp~~i--~~l~~L~~L~l~~~~i----------  185 (415)
                      ...++.+.+.......   .....  .+..+++|++|++++|.+. ..|..+  ..+++|++|++++..+          
T Consensus        63 ~~~l~~l~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~  139 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPA---QLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL  139 (310)
T ss_dssp             SCCCCEEEECSCCCBH---HHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred             hcceeEEEEeCCcCCH---HHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence            4456667666655431   11111  1334567999999999988 677666  6777777777776111          


Q ss_pred             --cccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CC---Ccc--ccCCCCCCCeEEEecccCcchhcHHHhh
Q 043839          186 --KLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SC---TPD--ILGRLPNVQTLRISGDLSYHHSGVSKSL  257 (415)
Q Consensus       186 --~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~---~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~l  257 (415)
                        ..+++|++|++++|.+....|..++.+++|++|+++++. ..   ++.  .++.+++|++|++++|.-......+..+
T Consensus       140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l  219 (310)
T 4glp_A          140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL  219 (310)
T ss_dssp             HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred             HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence              235566666666555544444555566666666666554 11   211  1245556666666655210001111111


Q ss_pred             hccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccC
Q 043839          258 CELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSM  337 (415)
Q Consensus       258 ~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~  337 (415)
                                                +..+ ++|++|++++|.+++..|..++.+.           .+++|++|++++|
T Consensus       220 --------------------------~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~-----------~~~~L~~L~Ls~N  261 (310)
T 4glp_A          220 --------------------------AAAG-VQPHSLDLSHNSLRATVNPSAPRCM-----------WSSALNSLNLSFA  261 (310)
T ss_dssp             --------------------------HHHT-CCCSSEECTTSCCCCCCCSCCSSCC-----------CCTTCCCEECCSS
T ss_pred             --------------------------HhcC-CCCCEEECCCCCCCccchhhHHhcc-----------CcCcCCEEECCCC
Confidence                                      1334 5555556666655444444443331           1234444444555


Q ss_pred             CCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          338 LWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       338 ~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                       .++.+|..+.  ++|+.|++++|... .+|. +..+++|+.|++++++
T Consensus       262 -~l~~lp~~~~--~~L~~L~Ls~N~l~-~~~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          262 -GLEQVPKGLP--AKLRVLDLSSNRLN-RAPQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             -CCCSCCSCCC--SCCSCEECCSCCCC-SCCC-TTSCCCCSCEECSSTT
T ss_pred             -CCCchhhhhc--CCCCEEECCCCcCC-CCch-hhhCCCccEEECcCCC
Confidence             4445554432  56666666666554 2332 4455666666666544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.63  E-value=6.9e-16  Score=144.20  Aligned_cols=176  Identities=18%  Similarity=0.124  Sum_probs=121.0

Q ss_pred             cccCcEEEecCCCCCCCCCCcc--cCccccceeccccCC-C-CCc----cccCCCCCCCeEEEecccCcchhcHHHhhhc
Q 043839          188 MQKLMHLNFGSITMPSPPNNYS--SSLKDLIFISAVHPS-S-CTP----DILGRLPNVQTLRISGDLSYHHSGVSKSLCE  259 (415)
Q Consensus       188 l~~L~~L~l~~~~~~~~~p~~i--~~l~~L~~L~l~~~~-~-~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~  259 (415)
                      +++|++|++++|.+....|..+  +.+++|++|++.++. . ..+    ..+..+++|++|++++|  ......+..+..
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~~~~~  167 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA--HSPAFSCEQVRA  167 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC--SSCCCCTTSCCC
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC--CcchhhHHHhcc
Confidence            4568888888777777788777  888889999988887 2 222    33457888888888888  454555566777


Q ss_pred             cCCCcEEEeecCccccccccc-cc-CCCCCCCCceEEEEEccccCCCCch----hhcCCCCCCeEeeccCCCCCcccEEE
Q 043839          260 LHKLECLKLVNEGKMWQFSRM-IL-SEYKFPPTLTQLSLSNTKLMEDPMP----TLEKLPLLEVLKLKQNSSFPLLKILH  333 (415)
Q Consensus       260 l~~L~~L~l~~~~~il~~l~L-lp-~~~~lp~~L~~L~l~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~~~L~~L~  333 (415)
                      +++|+.|++++ |.+.....+ .+ ++..+ ++|++|++++|.++. .+.    .++.              +++|++|+
T Consensus       168 l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~~--------------l~~L~~L~  230 (310)
T 4glp_A          168 FPALTSLDLSD-NPGLGERGLMAALCPHKF-PAIQNLALRNTGMET-PTGVCAALAAA--------------GVQPHSLD  230 (310)
T ss_dssp             CTTCCEEECCS-CTTCHHHHHHTTSCTTSS-CCCCSCBCCSSCCCC-HHHHHHHHHHH--------------TCCCSSEE
T ss_pred             CCCCCEEECCC-CCCccchhhhHHHhhhcC-CCCCEEECCCCCCCc-hHHHHHHHHhc--------------CCCCCEEE
Confidence            78888888877 421000000 12 34667 788888888887642 222    1233              35566666


Q ss_pred             eccCCCccc-eEEcCCCc---cCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          334 LKSMLWLEE-WTMGAGSM---PKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       334 l~~~~~l~~-l~~~~~~l---~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      +++|. ++. .|..++.+   ++|++|++++|... .+|..+.  ++|+.|++++|.
T Consensus       231 Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~  283 (310)
T 4glp_A          231 LSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNR  283 (310)
T ss_dssp             CTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCC
T ss_pred             CCCCC-CCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCc
Confidence            68884 454 46666666   79999999999877 7887774  899999999986

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.63  E-value=2.2e-15  Score=135.29  Aligned_cols=174  Identities=14%  Similarity=0.077  Sum_probs=105.2

Q ss_pred             ccccccCcEEEecCCCCCCCCCC-cccCccccceecccc-CC-CCCc-cccCCCCCCCeEEEecccCcchhcHHHhhhcc
Q 043839          185 LKLMQKLMHLNFGSITMPSPPNN-YSSSLKDLIFISAVH-PS-SCTP-DILGRLPNVQTLRISGDLSYHHSGVSKSLCEL  260 (415)
Q Consensus       185 i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~-~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l  260 (415)
                      ++++++|++|++++|.....++. .++.+++|++|++.+ +. ..++ ..+..+++|++|++++|.   ...+|. +..+
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~---l~~lp~-~~~l  126 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG---LKMFPD-LTKV  126 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC---CCSCCC-CTTC
T ss_pred             ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC---Cccccc-cccc
Confidence            44555666666664542334443 567777777777776 55 4443 346677777777777762   222333 4444


Q ss_pred             CCCc---EEEeecCc-cccccccccc--CCCCCCCCce-EEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEE
Q 043839          261 HKLE---CLKLVNEG-KMWQFSRMIL--SEYKFPPTLT-QLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILH  333 (415)
Q Consensus       261 ~~L~---~L~l~~~~-~il~~l~Llp--~~~~lp~~L~-~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~  333 (415)
                      ++|+   .|++++ + .+-.    +|  .+..+ ++|+ .|++++|.++ .++...              ...++|++|+
T Consensus       127 ~~L~~L~~L~l~~-N~~l~~----i~~~~~~~l-~~L~~~L~l~~n~l~-~i~~~~--------------~~~~~L~~L~  185 (239)
T 2xwt_C          127 YSTDIFFILEITD-NPYMTS----IPVNAFQGL-CNETLTLKLYNNGFT-SVQGYA--------------FNGTKLDAVY  185 (239)
T ss_dssp             CBCCSEEEEEEES-CTTCCE----ECTTTTTTT-BSSEEEEECCSCCCC-EECTTT--------------TTTCEEEEEE
T ss_pred             cccccccEEECCC-Ccchhh----cCcccccch-hcceeEEEcCCCCCc-ccCHhh--------------cCCCCCCEEE
Confidence            4444   555554 2 1100    22  34445 5555 5555555443 111111              1125788888


Q ss_pred             eccCCCccceEE-cCCCc-cCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          334 LKSMLWLEEWTM-GAGSM-PKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       334 l~~~~~l~~l~~-~~~~l-~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      +++|..++.++. .+..+ ++|+.|++++|+.. .+|..  .+++|+.|++.++.
T Consensus       186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             cCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence            899866888864 47888 99999999999776 57754  68899999998875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.62  E-value=2.1e-15  Score=135.42  Aligned_cols=200  Identities=13%  Similarity=0.111  Sum_probs=126.8

Q ss_pred             cCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc-cccCcccccCccCCceEecCcccccccccCcEE
Q 043839          116 PLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV-LDLYPPGLENLFHLKYLKLITPLLKLMQKLMHL  194 (415)
Q Consensus       116 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L  194 (415)
                      ++. ..++++.|.+.++..    ..+.+..|..+++|++|++++|. ++.++.               ..++++++|++|
T Consensus        26 ip~-~~~~l~~L~l~~n~l----~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~---------------~~f~~l~~L~~L   85 (239)
T 2xwt_C           26 IPS-LPPSTQTLKLIETHL----RTIPSHAFSNLPNISRIYVSIDVTLQQLES---------------HSFYNLSKVTHI   85 (239)
T ss_dssp             CCC-CCTTCCEEEEESCCC----SEECTTTTTTCTTCCEEEEECCSSCCEECT---------------TTEESCTTCCEE
T ss_pred             cCC-CCCcccEEEEeCCcc----eEECHHHccCCCCCcEEeCCCCCCcceeCH---------------hHcCCCcCCcEE
Confidence            444 444677777777666    44444566777777777777775 665443               133445566666


Q ss_pred             EecC-CCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCC---eEEEecccCcchhcHH-HhhhccCCCc-EEE
Q 043839          195 NFGS-ITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQ---TLRISGDLSYHHSGVS-KSLCELHKLE-CLK  267 (415)
Q Consensus       195 ~l~~-~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~~-~~l~~l~~L~-~L~  267 (415)
                      ++++ |.+....+..+..+++|++|++.++. ..+|. ++.+++|+   .|++++|.  ....++ ..+..+++|+ .|+
T Consensus        86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~--~l~~i~~~~~~~l~~L~~~L~  162 (239)
T 2xwt_C           86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNP--YMTSIPVNAFQGLCNETLTLK  162 (239)
T ss_dssp             EEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCT--TCCEECTTTTTTTBSSEEEEE
T ss_pred             ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCc--chhhcCcccccchhcceeEEE
Confidence            6664 33333333456777888888888777 55665 77777777   88888761  223333 3467778888 888


Q ss_pred             eecCccccccccc--cc-CCCCCCCCceEEEEEccc-cCCCCchhhcCC-CCCCeEeeccCCCCCcccEEEeccCCCccc
Q 043839          268 LVNEGKMWQFSRM--IL-SEYKFPPTLTQLSLSNTK-LMEDPMPTLEKL-PLLEVLKLKQNSSFPLLKILHLKSMLWLEE  342 (415)
Q Consensus       268 l~~~~~il~~l~L--lp-~~~~lp~~L~~L~l~~~~-l~~~~~~~l~~l-~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~  342 (415)
                      +++ +      ++  +| ..... ++|++|++++|. ++...+..++.+ ++              |++|++++| .++.
T Consensus       163 l~~-n------~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~--------------L~~L~l~~N-~l~~  219 (239)
T 2xwt_C          163 LYN-N------GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSG--------------PSLLDVSQT-SVTA  219 (239)
T ss_dssp             CCS-C------CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBC--------------CSEEECTTC-CCCC
T ss_pred             cCC-C------CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccC--------------CcEEECCCC-cccc
Confidence            877 4      22  56 44455 789999999995 765445555555 54              455555666 5666


Q ss_pred             eEEcCCCccCccEEEEecCcc
Q 043839          343 WTMGAGSMPKLESLILNPCAY  363 (415)
Q Consensus       343 l~~~~~~l~~L~~L~l~~c~~  363 (415)
                      +|..  .+++|+.|+++++..
T Consensus       220 l~~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          220 LPSK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             CCCT--TCTTCSEEECTTC--
T ss_pred             CChh--HhccCceeeccCccC
Confidence            6654  788888888887753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.61  E-value=3.3e-15  Score=142.07  Aligned_cols=206  Identities=17%  Similarity=0.088  Sum_probs=112.1

Q ss_pred             CcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCC-cccCccccceeccc-cCC-CC
Q 043839          150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNN-YSSSLKDLIFISAV-HPS-SC  226 (415)
Q Consensus       150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~-~~~-~~  226 (415)
                      +++++|+|++|.++.+|..               .++++++|++|++++|.+...+|. .+.++++++++... .+. ..
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~---------------~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~   94 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKG---------------AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY   94 (350)
T ss_dssp             TTCSEEEEESCCCSEECTT---------------SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred             CCCCEEEccCCcCCCcCHH---------------HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence            4556666666666655532               234455555555554544444443 24555555543332 233 33


Q ss_pred             C-ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEcccc
Q 043839          227 T-PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKL  301 (415)
Q Consensus       227 ~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l  301 (415)
                      + +..++.+++|+.|++++|.  .....+.......++..+++...+      ++  +|  .+..++..++.|++++|.+
T Consensus        95 l~~~~f~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~l~~l~l~~~~------~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           95 INPEAFQNLPNLQYLLISNTG--IKHLPDVHKIHSLQKVLLDIQDNI------NIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             ECTTSBCCCTTCCEEEEEEEC--CSSCCCCTTCCBSSCEEEEEESCT------TCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCchhhhhccccccccccccc--cccCCchhhcccchhhhhhhcccc------ccccccccchhhcchhhhhhccccccc
Confidence            3 3445666666666666652  222222222333445555554311      11  23  3333324566666666665


Q ss_pred             CCCCchhhcCCCCCCeEeecc-----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhh
Q 043839          302 MEDPMPTLEKLPLLEVLKLKQ-----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEE  370 (415)
Q Consensus       302 ~~~~~~~l~~l~~L~~L~l~~-----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~  370 (415)
                      + .++......++|+.+.+.+           ...+++|++|++++| .++.+|.  +.+.+|+.|.+.++..++.+| .
T Consensus       167 ~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP-~  241 (350)
T 4ay9_X          167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLP-T  241 (350)
T ss_dssp             C-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCC-C
T ss_pred             c-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCC-C
Confidence            4 3333333445666666653           234567777777877 6777764  357777777777777777777 4


Q ss_pred             hcCCCCCCeEEEe
Q 043839          371 LWCIKNLCKLELH  383 (415)
Q Consensus       371 l~~l~~L~~L~l~  383 (415)
                      +..+++|+.+++.
T Consensus       242 l~~l~~L~~l~l~  254 (350)
T 4ay9_X          242 LEKLVALMEASLT  254 (350)
T ss_dssp             TTTCCSCCEEECS
T ss_pred             chhCcChhhCcCC
Confidence            7778888888875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.61  E-value=1.6e-16  Score=161.62  Aligned_cols=282  Identities=13%  Similarity=0.057  Sum_probs=164.4

Q ss_pred             CceeEEEEEeCCCCCc-cCCCC---CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCc----cccc
Q 043839          100 ANVKRCFILKDLTEFF-PLEHS---DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYP----PGLE  170 (415)
Q Consensus       100 ~~~r~l~l~~~~~~~~-~~~~~---~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp----~~i~  170 (415)
                      ..++++.+. .+.... .....   +++|++|.+.++....  ...++..+.++++|++|++++|.++ ..+    ....
T Consensus       105 ~~L~~L~L~-~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          105 TWLEEIRLK-RMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             TTCCEEEEE-SCBCCHHHHHHHHHHCTTCCEEEEESCEEEE--HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             CCCCeEEee-CcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC--HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            456777777 543321 11111   6788888887764321  2234455667888888888887755 222    2223


Q ss_pred             CccCCceEecCcc-----------cccccccCcEEEecCCCCCC------------------------------------
Q 043839          171 NLFHLKYLKLITP-----------LLKLMQKLMHLNFGSITMPS------------------------------------  203 (415)
Q Consensus       171 ~l~~L~~L~l~~~-----------~i~~l~~L~~L~l~~~~~~~------------------------------------  203 (415)
                      .+++|++|++++.           .+.++++|++|++++|....                                    
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l  261 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL  261 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence            5567777777651           12335677777776441100                                    


Q ss_pred             ------------------CCCCcccCccccceeccccCC---CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCC
Q 043839          204 ------------------PPNNYSSSLKDLIFISAVHPS---SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHK  262 (415)
Q Consensus       204 ------------------~~p~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~  262 (415)
                                        .+|..+..+++|++|++.+|.   ..+...+..+++|++|++.++  .....++.....+++
T Consensus       262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKD  339 (594)
T ss_dssp             HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTT
T ss_pred             hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCC
Confidence                              112222246777777777776   223333567888888888877  233334444445788


Q ss_pred             CcEEEeec--------Cccc--------------cccc-----cc----ccCC-CCCCCCceEEEEE--c----cccCCC
Q 043839          263 LECLKLVN--------EGKM--------------WQFS-----RM----ILSE-YKFPPTLTQLSLS--N----TKLMED  304 (415)
Q Consensus       263 L~~L~l~~--------~~~i--------------l~~l-----~L----lp~~-~~lp~~L~~L~l~--~----~~l~~~  304 (415)
                      |+.|++..        .+.+              |+.|     ++    +..+ ..+ ++|++|+++  +    +.++..
T Consensus       340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR-PNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC-TTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC-CCcceeEeecccCCCcccccCC
Confidence            88887722        1111              1111     01    1111 246 788888888  2    233321


Q ss_pred             -----CchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEc-CCCccCccEEEEecCcccCCCh
Q 043839          305 -----PMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMG-AGSMPKLESLILNPCAYLRKLP  368 (415)
Q Consensus       305 -----~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~~~~lp  368 (415)
                           .+..+..+++|+.|++++          ...+++|++|++++|......+.. ..++++|+.|++++|+.....+
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~  498 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL  498 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred             chhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence                 122356778888888876          113788999999988532222222 2568999999999999743222


Q ss_pred             -hhhcCCCCCCeEEEecCCh
Q 043839          369 -EELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       369 -~~l~~l~~L~~L~l~~c~~  387 (415)
                       ..+..+++|+.|++++|+.
T Consensus       499 ~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          499 LANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHhCCCCCEEeeeCCCC
Confidence             3455689999999999985

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.60  E-value=2.7e-16  Score=150.24  Aligned_cols=219  Identities=14%  Similarity=0.094  Sum_probs=103.6

Q ss_pred             hHHHhccCCcccEEEcCCcccccCc-----ccccCcc-CCceEecCc--------cccccc-----ccCcEEEecCCCCC
Q 043839          142 CENFCKKFKHLRVLNLGSAVLDLYP-----PGLENLF-HLKYLKLIT--------PLLKLM-----QKLMHLNFGSITMP  202 (415)
Q Consensus       142 ~~~~~~~~~~L~~L~l~~~~~~~lp-----~~i~~l~-~L~~L~l~~--------~~i~~l-----~~L~~L~l~~~~~~  202 (415)
                      .+.++...++|++|++++|.++..+     ..+..++ +|++|++++        ..+..+     ++|++|++++|.+.
T Consensus        14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~   93 (362)
T 3goz_A           14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS   93 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence            3444555555666666666665333     3444555 566666655        112222     55666666645444


Q ss_pred             CCCCCcccC----c-cccceeccccCC--CCCcc----ccCC-CCCCCeEEEecccCcch----hcHHHhhhccC-CCcE
Q 043839          203 SPPNNYSSS----L-KDLIFISAVHPS--SCTPD----ILGR-LPNVQTLRISGDLSYHH----SGVSKSLCELH-KLEC  265 (415)
Q Consensus       203 ~~~p~~i~~----l-~~L~~L~l~~~~--~~~~~----~l~~-l~~L~~L~l~~~~~~~~----~~~~~~l~~l~-~L~~  265 (415)
                      ...+..+..    + ++|++|++++|.  ...+.    .+.. .++|++|++++|.  ..    ..++..+..++ +|+.
T Consensus        94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~  171 (362)
T 3goz_A           94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND--LGIKSSDELIQILAAIPANVNS  171 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTSCTTCCE
T ss_pred             hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc--CCHHHHHHHHHHHhcCCccccE
Confidence            343333222    2 566666666665  11111    1233 2466666666652  22    23444444443 5666


Q ss_pred             EEeecCccccccccc--cc-CCCCCCCCceEEEEEccccCCCC----chhhcC-CCCCCeEeecc--------------C
Q 043839          266 LKLVNEGKMWQFSRM--IL-SEYKFPPTLTQLSLSNTKLMEDP----MPTLEK-LPLLEVLKLKQ--------------N  323 (415)
Q Consensus       266 L~l~~~~~il~~l~L--lp-~~~~lp~~L~~L~l~~~~l~~~~----~~~l~~-l~~L~~L~l~~--------------~  323 (415)
                      |++++ +.+-.. ..  +. .+..+|++|++|++++|.++...    +..+.. .++|+.|++++              .
T Consensus       172 L~Ls~-n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~  249 (362)
T 3goz_A          172 LNLRG-NNLASK-NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK  249 (362)
T ss_dssp             EECTT-SCGGGS-CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred             eeecC-CCCchh-hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence            66655 311000 00  11 12233235666666666554322    222322 23555555544              1


Q ss_pred             CCCCcccEEEeccCC-------CccceEEcCCCccCccEEEEecCccc
Q 043839          324 SSFPLLKILHLKSML-------WLEEWTMGAGSMPKLESLILNPCAYL  364 (415)
Q Consensus       324 ~~~~~L~~L~l~~~~-------~l~~l~~~~~~l~~L~~L~l~~c~~~  364 (415)
                      ..+++|++|++++|.       .+..++..+..+++|+.|++++|+..
T Consensus       250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            344566666666663       01223334556666777777776644

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.59  E-value=1e-14  Score=131.90  Aligned_cols=173  Identities=17%  Similarity=0.216  Sum_probs=103.8

Q ss_pred             CcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CC-C
Q 043839          150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SC-T  227 (415)
Q Consensus       150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~-~  227 (415)
                      ...++++++++.++.+|..+.                  ++++.|++++|.+....+..++.+++|++|++.++. .. .
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~------------------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~   75 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP------------------ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS   75 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC------------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred             CCCeEEecCCCCccccCCCCC------------------CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC
Confidence            567888888888888886543                  355666666566666666678888888888888887 33 3


Q ss_pred             ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCC
Q 043839          228 PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLME  303 (415)
Q Consensus       228 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~  303 (415)
                      +..+..+++|++|++++|  ......+..+..+++|+.|++++ +      ++  +|  .+..+ ++|++|++++|.+++
T Consensus        76 ~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~-N------~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~  145 (251)
T 3m19_A           76 AGVFDDLTELGTLGLANN--QLASLPLGVFDHLTQLDKLYLGG-N------QLKSLPSGVFDRL-TKLKELRLNTNQLQS  145 (251)
T ss_dssp             TTTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECCS-S------CCCCCCTTTTTTC-TTCCEEECCSSCCCC
T ss_pred             HhHhccCCcCCEEECCCC--cccccChhHhcccCCCCEEEcCC-C------cCCCcChhHhccC-CcccEEECcCCcCCc
Confidence            445778888888888887  33333333445556666666655 3      22  33  34455 555566655555543


Q ss_pred             CCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEE-cCCCccCccEEEEecCcccC
Q 043839          304 DPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTM-GAGSMPKLESLILNPCAYLR  365 (415)
Q Consensus       304 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~~~  365 (415)
                      ..+..++.++              +|++|++++| .++.++. .+..+++|+.|++++|+...
T Consensus       146 ~~~~~~~~l~--------------~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          146 IPAGAFDKLT--------------NLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCTTTTTTCT--------------TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             cCHHHcCcCc--------------CCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            3333333333              3333333454 3444432 35566666666666666544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.59  E-value=1.3e-14  Score=131.26  Aligned_cols=167  Identities=20%  Similarity=0.195  Sum_probs=94.5

Q ss_pred             CceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCc-ccccCccCCceEecCcccccccccCcEEEecCCC
Q 043839          122 MYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYP-PGLENLFHLKYLKLITPLLKLMQKLMHLNFGSIT  200 (415)
Q Consensus       122 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~  200 (415)
                      +..+.+.+.+....    .++ ..+  .+++++|++++|.++.++ ..+.++++|++|++++                |.
T Consensus        14 ~~~~~l~~~~~~l~----~~p-~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~----------------n~   70 (251)
T 3m19_A           14 EGKKEVDCQGKSLD----SVP-SGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY----------------NQ   70 (251)
T ss_dssp             GGGTEEECTTCCCS----SCC-SCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT----------------SC
T ss_pred             CCCeEEecCCCCcc----ccC-CCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCC----------------Cc
Confidence            34566666666552    222 222  268999999999998554 3466666666666554                44


Q ss_pred             CCCCCCCcccCccccceeccccCC-CCCc-cccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccc
Q 043839          201 MPSPPNNYSSSLKDLIFISAVHPS-SCTP-DILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFS  278 (415)
Q Consensus       201 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l  278 (415)
                      +....|..+..+++|++|++.++. ..++ ..++.+++|++|++++|  ......+..+..+++|+.|++++ +      
T Consensus        71 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~-N------  141 (251)
T 3m19_A           71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN--QLKSLPSGVFDRLTKLKELRLNT-N------  141 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-S------
T ss_pred             CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC--cCCCcChhHhccCCcccEEECcC-C------
Confidence            444344445555566666665555 3332 33455566666666655  22222222345556666666655 3      


Q ss_pred             cc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeec
Q 043839          279 RM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLK  321 (415)
Q Consensus       279 ~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  321 (415)
                      ++  +|  .+..+ ++|++|++++|.+++..+..+..+++|+.|+++
T Consensus       142 ~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          142 QLQSIPAGAFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF  187 (251)
T ss_dssp             CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cCCccCHHHcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence            22  33  46666 777777777777765555556666655555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.59  E-value=8.3e-17  Score=153.83  Aligned_cols=228  Identities=12%  Similarity=0.049  Sum_probs=163.8

Q ss_pred             EEEcCCcccc-cCcccccCccCCceEecCc------------ccccccc-cCcEEEecCCCCCCCCCCcccCc-----cc
Q 043839          154 VLNLGSAVLD-LYPPGLENLFHLKYLKLIT------------PLLKLMQ-KLMHLNFGSITMPSPPNNYSSSL-----KD  214 (415)
Q Consensus       154 ~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~------------~~i~~l~-~L~~L~l~~~~~~~~~p~~i~~l-----~~  214 (415)
                      +++++.+.++ .+|..+....+|++|++++            ..+.+++ +|++|++++|.+....+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            4678888888 5666566666799999999            2345676 89999999887776667666665     99


Q ss_pred             cceeccccCC--CCCccc----cCCC-CCCCeEEEecccCcchhcHHH----hhhc-cCCCcEEEeecCccccccccc--
Q 043839          215 LIFISAVHPS--SCTPDI----LGRL-PNVQTLRISGDLSYHHSGVSK----SLCE-LHKLECLKLVNEGKMWQFSRM--  280 (415)
Q Consensus       215 L~~L~l~~~~--~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~----~l~~-l~~L~~L~l~~~~~il~~l~L--  280 (415)
                      |++|++++|.  ...+..    +..+ ++|++|++++|.  ..+..+.    .+.. .++|+.|++++ +.+-.. ..  
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~-~~~~  157 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND--FSSKSSSEFKQAFSNLPASITSLNLRG-NDLGIK-SSDE  157 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC--GGGSCHHHHHHHHTTSCTTCCEEECTT-SCGGGS-CHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc--CCcHHHHHHHHHHHhCCCceeEEEccC-CcCCHH-HHHH
Confidence            9999999998  333433    4455 899999999994  4433333    3444 36999999998 422000 00  


Q ss_pred             cc-CCCCCCCCceEEEEEccccCCCCchhh----cCC-CCCCeEeecc--CC-------------CCCcccEEEeccCCC
Q 043839          281 IL-SEYKFPPTLTQLSLSNTKLMEDPMPTL----EKL-PLLEVLKLKQ--NS-------------SFPLLKILHLKSMLW  339 (415)
Q Consensus       281 lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l----~~l-~~L~~L~l~~--~~-------------~~~~L~~L~l~~~~~  339 (415)
                      ++ .+..+|++|++|++++|.+++..+..+    ..+ ++|+.|++++  .+             ..++|++|++++| .
T Consensus       158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~  236 (362)
T 3goz_A          158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-C  236 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-C
T ss_pred             HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-C
Confidence            34 445563599999999999877666544    445 5999999998  11             1358999999999 4


Q ss_pred             ccceE-----EcCCCccCccEEEEecCcccC-------CChhhhcCCCCCCeEEEecCC
Q 043839          340 LEEWT-----MGAGSMPKLESLILNPCAYLR-------KLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       340 l~~l~-----~~~~~l~~L~~L~l~~c~~~~-------~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      ++..+     ..+..+++|+.|++++|....       .++..+..+++|+.|++++++
T Consensus       237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            55432     345788999999999998332       234456778889999999876

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.57  E-value=3.9e-16  Score=158.78  Aligned_cols=120  Identities=20%  Similarity=0.176  Sum_probs=68.8

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCc-ccc--cCcccccCccCCceEecCccc--------c----
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSA-VLD--LYPPGLENLFHLKYLKLITPL--------L----  185 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~--~lp~~i~~l~~L~~L~l~~~~--------i----  185 (415)
                      +++|++|.+.++...   ...+......+++|++|++++| .++  .++..+.++++|++|++++..        +    
T Consensus       104 ~~~L~~L~L~~~~~~---~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVT---DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             CTTCCEEEEESCBCC---HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             CCCCCeEEeeCcEEc---HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            567777777776542   1222222335777777777777 344  244444467777777777511        1    


Q ss_pred             cccccCcEEEecCCCCCCCCC-----CcccCccccceeccccCC--CCCccccCCCCCCCeEEEecc
Q 043839          186 KLMQKLMHLNFGSITMPSPPN-----NYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGD  245 (415)
Q Consensus       186 ~~l~~L~~L~l~~~~~~~~~p-----~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~  245 (415)
                      ..+++|++|+++++.  ..+.     ..+..+++|++|++.+|.  ..++..+..+++|+.|++..+
T Consensus       181 ~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          181 DTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             TTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             hcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence            245577777777443  1121     112345777777777764  345556666777777765443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.55  E-value=2.3e-14  Score=125.71  Aligned_cols=169  Identities=19%  Similarity=0.197  Sum_probs=86.3

Q ss_pred             cEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-c
Q 043839          153 RVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-I  230 (415)
Q Consensus       153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~  230 (415)
                      +.++.+++.++.+|..+.  .+|                ++|++++|.+....+..++.+++|++|++.++. ..++. .
T Consensus        10 ~~v~c~~~~l~~~p~~~~--~~l----------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~   71 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIP--AQT----------------TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV   71 (208)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTC----------------SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred             CEEEecCCCccCCCCCCC--CCC----------------cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh
Confidence            455666666666664432  233                333444343332223334555566666655555 33333 2


Q ss_pred             cCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCc
Q 043839          231 LGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPM  306 (415)
Q Consensus       231 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~  306 (415)
                      +..+++|++|++++|  ......+..+..+++|+.|++++ +      ++  +|  .+..+ ++|++|++++|.+++..+
T Consensus        72 ~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~-N------~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~  141 (208)
T 2o6s_A           72 FNKLTSLTYLNLSTN--QLQSLPNGVFDKLTQLKELALNT-N------QLQSLPDGVFDKL-TQLKDLRLYQNQLKSVPD  141 (208)
T ss_dssp             TTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-S------CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCT
T ss_pred             cCCCCCcCEEECCCC--cCCccCHhHhcCccCCCEEEcCC-C------cCcccCHhHhccC-CcCCEEECCCCccceeCH
Confidence            455666666666655  22222223345555666666655 3      22  34  45677 888888888888765555


Q ss_pred             hhhcCCCCCCeEeecc---CCCCCcccEEEeccCCCccceEEcCCC
Q 043839          307 PTLEKLPLLEVLKLKQ---NSSFPLLKILHLKSMLWLEEWTMGAGS  349 (415)
Q Consensus       307 ~~l~~l~~L~~L~l~~---~~~~~~L~~L~l~~~~~l~~l~~~~~~  349 (415)
                      ..++.+++|+.|++++   .+.+++|++|+++.|...+.+|..++.
T Consensus       142 ~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          142 GVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             TTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             HHhccCCCccEEEecCCCeecCCCCHHHHHHHHHhCCceeeccCcc
Confidence            5566666666666643   223333444444443333334433333

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.55  E-value=9e-15  Score=127.23  Aligned_cols=145  Identities=20%  Similarity=0.245  Sum_probs=77.5

Q ss_pred             ccCCcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--
Q 043839          147 KKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--  224 (415)
Q Consensus       147 ~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--  224 (415)
                      ..+++|++|+++++.++.+| .+..+++|++|++++                | ... .+..++.+++|++|++.++.  
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~----------------n-~~~-~~~~l~~l~~L~~L~l~~n~l~  101 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINN----------------I-HAT-NYNPISGLSNLERLRIMGKDVT  101 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEES----------------C-CCS-CCGGGTTCTTCCEEEEECTTCB
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccC----------------C-CCC-cchhhhcCCCCCEEEeECCccC
Confidence            55677888888888877666 455555555555543                2 111 12234555555555555554  


Q ss_pred             CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcc-cccccccccCCCCCCCCceEEEEEccccCC
Q 043839          225 SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGK-MWQFSRMILSEYKFPPTLTQLSLSNTKLME  303 (415)
Q Consensus       225 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-il~~l~Llp~~~~lp~~L~~L~l~~~~l~~  303 (415)
                      ...+..++.+++|+.|++++|  ...+..+..+..+++|+.|++++ +. +-.    +|.+..+ ++|+.|++++|.+++
T Consensus       102 ~~~~~~l~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~L~~-n~~i~~----~~~l~~l-~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          102 SDKIPNLSGLTSLTLLDISHS--AHDDSILTKINTLPKVNSIDLSY-NGAITD----IMPLKTL-PELKSLNIQFDGVHD  173 (197)
T ss_dssp             GGGSCCCTTCTTCCEEECCSS--BCBGGGHHHHTTCSSCCEEECCS-CTBCCC----CGGGGGC-SSCCEEECTTBCCCC
T ss_pred             cccChhhcCCCCCCEEEecCC--ccCcHhHHHHhhCCCCCEEEccC-CCCccc----cHhhcCC-CCCCEEECCCCCCcC
Confidence            223444555555555555555  34444455555555555555555 31 000    3344555 666666666666543


Q ss_pred             CCchhhcCCCCCCeEee
Q 043839          304 DPMPTLEKLPLLEVLKL  320 (415)
Q Consensus       304 ~~~~~l~~l~~L~~L~l  320 (415)
                       .+ .+..+++|+.|++
T Consensus       174 -~~-~l~~l~~L~~L~l  188 (197)
T 4ezg_A          174 -YR-GIEDFPKLNQLYA  188 (197)
T ss_dssp             -CT-TGGGCSSCCEEEE
T ss_pred             -hH-HhccCCCCCEEEe
Confidence             22 4445555555444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.54  E-value=3.9e-14  Score=131.03  Aligned_cols=161  Identities=20%  Similarity=0.198  Sum_probs=95.0

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEE
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHL  194 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L  194 (415)
                      +++++.|.+.++...    .+  ..+..+++|++|++++|.++.++. ++++++|++|++++      +.++++++|++|
T Consensus        45 l~~L~~L~l~~~~i~----~~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L  117 (291)
T 1h6t_A           45 LNSIDQIIANNSDIK----SV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL  117 (291)
T ss_dssp             HHTCCEEECTTSCCC----CC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred             cCcccEEEccCCCcc----cC--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEE
Confidence            566777777666552    22  236667777777777777776665 66677777777766      445566666666


Q ss_pred             EecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcc
Q 043839          195 NFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGK  273 (415)
Q Consensus       195 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  273 (415)
                      ++++|.+.. + ..++.+++|++|++.++. ..+ ..++.+++|+.|++++|.  ..+ ++. +..+++|+.|++++ | 
T Consensus       118 ~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~--l~~-~~~-l~~l~~L~~L~L~~-N-  188 (291)
T 1h6t_A          118 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ--ISD-IVP-LAGLTKLQNLYLSK-N-  188 (291)
T ss_dssp             ECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC--CCC-CGG-GTTCTTCCEEECCS-S-
T ss_pred             ECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc--ccc-chh-hcCCCccCEEECCC-C-
Confidence            666444332 3 346666666666666666 333 456666666666666662  222 222 55566666666665 3 


Q ss_pred             ccccccc--ccCCCCCCCCceEEEEEccccCC
Q 043839          274 MWQFSRM--ILSEYKFPPTLTQLSLSNTKLME  303 (415)
Q Consensus       274 il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~  303 (415)
                           ++  +|.+..+ ++|+.|++++|.+..
T Consensus       189 -----~i~~l~~l~~l-~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          189 -----HISDLRALAGL-KNLDVLELFSQECLN  214 (291)
T ss_dssp             -----CCCBCGGGTTC-TTCSEEEEEEEEEEC
T ss_pred             -----cCCCChhhccC-CCCCEEECcCCcccC
Confidence                 12  3344555 666666666665543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.53  E-value=5.7e-14  Score=142.56  Aligned_cols=167  Identities=21%  Similarity=0.203  Sum_probs=104.3

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEE
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHL  194 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L  194 (415)
                      +++|+.|.+.++....    +  ..+..+++|++|+|++|.+..+|. ++.+++|++|+|++      +.+..+++|++|
T Consensus        42 L~~L~~L~l~~n~i~~----l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L  114 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKS----V--QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL  114 (605)
T ss_dssp             HTTCCCCBCTTCCCCC----C--TTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEE
T ss_pred             CCCCCEEECcCCCCCC----C--hHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEE
Confidence            5566666666665522    2  236677777777777777776655 66777777777766      455666777777


Q ss_pred             EecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcc
Q 043839          195 NFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGK  273 (415)
Q Consensus       195 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  273 (415)
                      ++++|.+. .+ +.+..+++|+.|++++|. ..+ ..++.+++|+.|++++|  ...+..|  +..+++|+.|+++. | 
T Consensus       115 ~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N--~l~~~~~--l~~l~~L~~L~Ls~-N-  185 (605)
T 1m9s_A          115 SLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN--QISDIVP--LAGLTKLQNLYLSK-N-  185 (605)
T ss_dssp             ECTTSCCC-CC-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS--CCCCCGG--GTTCTTCCEEECCS-S-
T ss_pred             EecCCCCC-CC-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC--cCCCchh--hccCCCCCEEECcC-C-
Confidence            77744433 23 346677777777777776 433 55667777777777776  2333222  66677777777766 3 


Q ss_pred             ccccccc--ccCCCCCCCCceEEEEEccccCCCCchhh
Q 043839          274 MWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTL  309 (415)
Q Consensus       274 il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l  309 (415)
                           ++  +|.+..+ ++|+.|++++|.+.......+
T Consensus       186 -----~i~~l~~l~~l-~~L~~L~L~~N~l~~~p~~~~  217 (605)
T 1m9s_A          186 -----HISDLRALAGL-KNLDVLELFSQECLNKPINHQ  217 (605)
T ss_dssp             -----CCCBCGGGTTC-TTCSEEECCSEEEECCCCCCC
T ss_pred             -----CCCCChHHccC-CCCCEEEccCCcCcCCccccc
Confidence                 22  4455666 777777777777655443333

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.52  E-value=4.9e-14  Score=130.35  Aligned_cols=148  Identities=19%  Similarity=0.233  Sum_probs=90.8

Q ss_pred             ccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCC
Q 043839          185 LKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKL  263 (415)
Q Consensus       185 i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L  263 (415)
                      ++.+++|++|++++|.+. .++. ++.+++|++|++.++. ..+ +.++.+++|++|++++|.  ..+ + ..+..+++|
T Consensus        64 ~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~--i~~-~-~~l~~l~~L  136 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNG--ISD-I-NGLVHLPQL  136 (291)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCG-GGGTTCTTCCEEECTTSC--CCC-C-GGGGGCTTC
T ss_pred             HhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCCcCCCC-hhhccCCCCCEEECCCCc--CCC-C-hhhcCCCCC
Confidence            344555566666644443 3443 7777888888887777 443 347777888888887772  222 2 356677777


Q ss_pred             cEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCcc
Q 043839          264 ECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLE  341 (415)
Q Consensus       264 ~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~  341 (415)
                      +.|++++ +      ++  ++.+..+ ++|+.|++++|.+.+..+  ++.+              ++|++|++++| .++
T Consensus       137 ~~L~l~~-n------~l~~~~~l~~l-~~L~~L~L~~N~l~~~~~--l~~l--------------~~L~~L~L~~N-~i~  191 (291)
T 1h6t_A          137 ESLYLGN-N------KITDITVLSRL-TKLDTLSLEDNQISDIVP--LAGL--------------TKLQNLYLSKN-HIS  191 (291)
T ss_dssp             CEEECCS-S------CCCCCGGGGGC-TTCSEEECCSSCCCCCGG--GTTC--------------TTCCEEECCSS-CCC
T ss_pred             CEEEccC-C------cCCcchhhccC-CCCCEEEccCCccccchh--hcCC--------------CccCEEECCCC-cCC
Confidence            7777776 3      22  3345566 777777777776643322  4444              44555555666 455


Q ss_pred             ceEEcCCCccCccEEEEecCcccC
Q 043839          342 EWTMGAGSMPKLESLILNPCAYLR  365 (415)
Q Consensus       342 ~l~~~~~~l~~L~~L~l~~c~~~~  365 (415)
                      .++ .+..+++|+.|++++|+...
T Consensus       192 ~l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          192 DLR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             BCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCh-hhccCCCCCEEECcCCcccC
Confidence            554 36777888888888877654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.52  E-value=6.6e-14  Score=133.02  Aligned_cols=222  Identities=14%  Similarity=0.075  Sum_probs=130.7

Q ss_pred             CCCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccc-cCcc-cccCccCCceEecCcccccc
Q 043839          110 DLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPP-GLENLFHLKYLKLITPLLKL  187 (415)
Q Consensus       110 ~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~-~i~~l~~L~~L~l~~~~i~~  187 (415)
                      +.....+|..+.++++.|.+.++..    ..+.+..|.++++|++|+|++|.+. .+|. .+.++++++.+..       
T Consensus        18 ~~~Lt~iP~~l~~~l~~L~Ls~N~i----~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~-------   86 (350)
T 4ay9_X           18 ESKVTEIPSDLPRNAIELRFVLTKL----RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI-------   86 (350)
T ss_dssp             STTCCSCCTTCCTTCSEEEEESCCC----SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE-------
T ss_pred             CCCCCccCcCcCCCCCEEEccCCcC----CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc-------
Confidence            4455556666677899999999988    5666678999999999999999975 5554 3455555544322       


Q ss_pred             cccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEecccCcchhcHHH-hhhcc-CCC
Q 043839          188 MQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGDLSYHHSGVSK-SLCEL-HKL  263 (415)
Q Consensus       188 l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~l-~~L  263 (415)
                              +.+|.+....|..++.+++|++|++.++. ..++. .+....++..|++.++  .....++. .+..+ ..+
T Consensus        87 --------~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~--~~i~~l~~~~f~~~~~~l  156 (350)
T 4ay9_X           87 --------EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN--INIHTIERNSFVGLSFES  156 (350)
T ss_dssp             --------EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC--TTCCEECTTSSTTSBSSC
T ss_pred             --------ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc--cccccccccchhhcchhh
Confidence                    22122222223345555555555555555 33322 2233344445555443  12222221 22232 345


Q ss_pred             cEEEeecCccccccccc--cc-CCCCCCCCceEEEEEcc-ccCCCCchhhcCCCCCCeEeecc-------CCCCCcccEE
Q 043839          264 ECLKLVNEGKMWQFSRM--IL-SEYKFPPTLTQLSLSNT-KLMEDPMPTLEKLPLLEVLKLKQ-------NSSFPLLKIL  332 (415)
Q Consensus       264 ~~L~l~~~~~il~~l~L--lp-~~~~lp~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~-------~~~~~~L~~L  332 (415)
                      +.|++++ |      ++  +| ..... .+|++|.+.++ .++......++.+++|++|++++       ...|.+|+.|
T Consensus       157 ~~L~L~~-N------~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L  228 (350)
T 4ay9_X          157 VILWLNK-N------GIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL  228 (350)
T ss_dssp             EEEECCS-S------CCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred             hhhcccc-c------cccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHh
Confidence            5555555 3      22  44 33344 55666666543 33222233456666666666665       3457788888


Q ss_pred             EeccCCCccceEEcCCCccCccEEEEecC
Q 043839          333 HLKSMLWLEEWTMGAGSMPKLESLILNPC  361 (415)
Q Consensus       333 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~c  361 (415)
                      .+.++.+++.+| .+..+++|+.+++.++
T Consensus       229 ~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          229 RARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             ECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             hhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            888888888888 4788999999998753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.50  E-value=5.9e-14  Score=123.05  Aligned_cols=167  Identities=17%  Similarity=0.143  Sum_probs=108.2

Q ss_pred             cCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEE
Q 043839          116 PLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLN  195 (415)
Q Consensus       116 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~  195 (415)
                      ++....++++.|.+.++..    ..+.+..+..+++|++|++++|.++.+|..               .+..+++|++|+
T Consensus        22 ~p~~~~~~l~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------~~~~l~~L~~L~   82 (208)
T 2o6s_A           22 VPTGIPAQTTYLDLETNSL----KSLPNGVFDELTSLTQLYLGGNKLQSLPNG---------------VFNKLTSLTYLN   82 (208)
T ss_dssp             CCSCCCTTCSEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCCCCCCTT---------------TTTTCTTCCEEE
T ss_pred             CCCCCCCCCcEEEcCCCcc----CcCChhhhcccccCcEEECCCCccCccChh---------------hcCCCCCcCEEE
Confidence            3433355677777766665    334444566677777777777766655432               234455566666


Q ss_pred             ecCCCCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcc
Q 043839          196 FGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGK  273 (415)
Q Consensus       196 l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  273 (415)
                      +++|.+....+..++.+++|++|++.++. ..++. .+..+++|++|++++|  ...+..+..+..+++|+.|++++ | 
T Consensus        83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L~l~~-N-  158 (208)
T 2o6s_A           83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN--QLKSVPDGVFDRLTSLQYIWLHD-N-  158 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCS-C-
T ss_pred             CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC--ccceeCHHHhccCCCccEEEecC-C-
Confidence            66455544334446778888888888877 44444 3677888888888887  34333334467788888888877 3 


Q ss_pred             cccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCCC
Q 043839          274 MWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPL  314 (415)
Q Consensus       274 il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~  314 (415)
                              |+...+ ++|+.|+++.|.+++.+|..++.++.
T Consensus       159 --------~~~~~~-~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          159 --------PWDCTC-PGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             --------CBCCCT-TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             --------CeecCC-CCHHHHHHHHHhCCceeeccCccccC
Confidence                    444566 78888888888888888877776543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.48  E-value=6.4e-14  Score=140.77  Aligned_cols=188  Identities=14%  Similarity=0.134  Sum_probs=124.6

Q ss_pred             CcccEEEcCCcccccCcccccCccCCceEecCcccc----cccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-
Q 043839          150 KHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLL----KLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-  224 (415)
Q Consensus       150 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i----~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-  224 (415)
                      .+|++|+++++.++.+|..+.  ++|++|++++..+    ..+++|++|++++|.+.. +|. ++.  +|++|++++|. 
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l  132 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLPELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQL  132 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCC
T ss_pred             CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcC
Confidence            389999999999888887664  6788888877222    345677777777555443 666 554  78888887777 


Q ss_pred             CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccC
Q 043839          225 SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLM  302 (415)
Q Consensus       225 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~  302 (415)
                      ..+|.   .+++|+.|++++|.  . ..+|.   .+++|+.|++++ |      ++  +|.   ++++|+.|++++|.++
T Consensus       133 ~~lp~---~l~~L~~L~Ls~N~--l-~~lp~---~l~~L~~L~Ls~-N------~L~~lp~---l~~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          133 TMLPE---LPALLEYINADNNQ--L-TMLPE---LPTSLEVLSVRN-N------QLTFLPE---LPESLEALDVSTNLLE  193 (571)
T ss_dssp             SCCCC---CCTTCCEEECCSSC--C-SCCCC---CCTTCCEEECCS-S------CCSCCCC---CCTTCCEEECCSSCCS
T ss_pred             CCCCC---cCccccEEeCCCCc--c-CcCCC---cCCCcCEEECCC-C------CCCCcch---hhCCCCEEECcCCCCC
Confidence            55665   56778888887772  2 22443   456777777766 4      22  332   2256777777777664


Q ss_pred             CCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCC
Q 043839          303 EDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCI  374 (415)
Q Consensus       303 ~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l  374 (415)
                       .+|. +..  +|       ....+.|+.|++++| .++.+|..+..+++|+.|++++|+..+.+|..+..+
T Consensus       194 -~lp~-~~~--~L-------~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          194 -SLPA-VPV--RN-------HHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             -SCCC-CC-----------------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             -chhh-HHH--hh-------hcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence             3333 221  11       112334588889988 778899888889999999999999888777766554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.47  E-value=1.7e-13  Score=119.12  Aligned_cols=152  Identities=15%  Similarity=0.141  Sum_probs=99.1

Q ss_pred             cccccCcEEEecCCCCCCCCCCcccCccccceeccccCCCCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcE
Q 043839          186 KLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLEC  265 (415)
Q Consensus       186 ~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~  265 (415)
                      +++++|++|++++|.+ ..+| ++..+++|++|++.++....+..+..+++|++|++++|  ......+.          
T Consensus        41 ~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~----------  106 (197)
T 4ezg_A           41 AQMNSLTYITLANINV-TDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK--DVTSDKIP----------  106 (197)
T ss_dssp             HHHHTCCEEEEESSCC-SCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECT--TCBGGGSC----------
T ss_pred             hhcCCccEEeccCCCc-cChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECC--ccCcccCh----------
Confidence            4566777777774443 3555 57777777877777776333446677777777777776  23222222          


Q ss_pred             EEeecCcccccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEE
Q 043839          266 LKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTM  345 (415)
Q Consensus       266 L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~  345 (415)
                                       .+..+ ++|++|++++|.+++..+..++.+++|+.|              ++++|..++.++ 
T Consensus       107 -----------------~l~~l-~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L--------------~L~~n~~i~~~~-  153 (197)
T 4ezg_A          107 -----------------NLSGL-TSLTLLDISHSAHDDSILTKINTLPKVNSI--------------DLSYNGAITDIM-  153 (197)
T ss_dssp             -----------------CCTTC-TTCCEEECCSSBCBGGGHHHHTTCSSCCEE--------------ECCSCTBCCCCG-
T ss_pred             -----------------hhcCC-CCCCEEEecCCccCcHhHHHHhhCCCCCEE--------------EccCCCCccccH-
Confidence                             55566 777777777777766566666655544444              445664466665 


Q ss_pred             cCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          346 GAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       346 ~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      .++.+++|+.|++++|... .++ .+..+++|+.|++++++
T Consensus       154 ~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          154 PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC-
T ss_pred             hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCcc
Confidence            5777888888888888765 355 67778888888888765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.46  E-value=8.7e-14  Score=141.19  Aligned_cols=178  Identities=17%  Similarity=0.170  Sum_probs=114.7

Q ss_pred             cEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-C
Q 043839          153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-S  225 (415)
Q Consensus       153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~  225 (415)
                      ..+.+..+.+..++. +..+.+|+.|++++      +.+..+++|+.|++++|.+. .++. +..+++|+.|++.+|. .
T Consensus        24 ~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N~l~  100 (605)
T 1m9s_A           24 IKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK  100 (605)
T ss_dssp             HHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCC
T ss_pred             HHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcCCCCC
Confidence            334444444443222 34555666666655      45666778888888855544 4444 8889999999999988 4


Q ss_pred             CCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCC
Q 043839          226 CTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLME  303 (415)
Q Consensus       226 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~  303 (415)
                      .++ .+..+++|+.|++++|.  .. .+ ..+..+++|+.|+++. +      ++  ++.+..+ ++|+.|+|++|.+.+
T Consensus       101 ~l~-~l~~l~~L~~L~Ls~N~--l~-~l-~~l~~l~~L~~L~Ls~-N------~l~~l~~l~~l-~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A          101 DLS-SLKDLKKLKSLSLEHNG--IS-DI-NGLVHLPQLESLYLGN-N------KITDITVLSRL-TKLDTLSLEDNQISD  167 (605)
T ss_dssp             CCT-TSTTCTTCCEEECTTSC--CC-CC-GGGGGCTTCSEEECCS-S------CCCCCGGGGSC-TTCSEEECCSSCCCC
T ss_pred             CCh-hhccCCCCCEEEecCCC--CC-CC-ccccCCCccCEEECCC-C------ccCCchhhccc-CCCCEEECcCCcCCC
Confidence            444 68889999999999883  32 23 4577888888888887 4      22  4456677 888888888888754


Q ss_pred             CCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCccc
Q 043839          304 DPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYL  364 (415)
Q Consensus       304 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~  364 (415)
                      ..+  ++.+++|+.|+|              ++| .+..++ .+..+++|+.|++++|+..
T Consensus       168 ~~~--l~~l~~L~~L~L--------------s~N-~i~~l~-~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          168 IVP--LAGLTKLQNLYL--------------SKN-HISDLR-ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CGG--GTTCTTCCEEEC--------------CSS-CCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred             chh--hccCCCCCEEEC--------------cCC-CCCCCh-HHccCCCCCEEEccCCcCc
Confidence            433  666665555555              444 344442 3555666666666666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.40  E-value=1e-15  Score=154.40  Aligned_cols=202  Identities=15%  Similarity=0.069  Sum_probs=116.5

Q ss_pred             ccCCcccEEEcCCcccccCcccccCccCCceEecCcc-cccccccCcEEEecCCCCCCCCCCcccCccccceec-cccCC
Q 043839          147 KKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITP-LLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFIS-AVHPS  224 (415)
Q Consensus       147 ~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~-l~~~~  224 (415)
                      ..+++|+.|++++|.++.+|..|+++++|+.|++++. .+..++.   +... +...+..|..++.+++|+.|+ +..+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~---ll~~-~~~~~~~~~~l~~l~~L~~L~~l~~n~  421 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL---LMRA-LDPLLYEKETLQYFSTLKAVDPMRAAY  421 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH---HHHH-HCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH---HHHh-cccccCCHHHHHHHHhcccCcchhhcc
Confidence            5678888999999998889998988888888887651 0011110   0000 112334556667777777776 33321


Q ss_pred             -CCCcc------ccCC--CCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc-CCCCCCCCce
Q 043839          225 -SCTPD------ILGR--LPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL-SEYKFPPTLT  292 (415)
Q Consensus       225 -~~~~~------~l~~--l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp-~~~~lp~~L~  292 (415)
                       ..++.      .+..  ...|+.|++++|   ....+|. ++.+++|+.|++++ |      ++  +| .+..+ ++|+
T Consensus       422 ~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n---~l~~lp~-~~~l~~L~~L~Ls~-N------~l~~lp~~~~~l-~~L~  489 (567)
T 1dce_A          422 LDDLRSKFLLENSVLKMEYADVRVLHLAHK---DLTVLCH-LEQLLLVTHLDLSH-N------RLRALPPALAAL-RCLE  489 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSEEECTTS---CCSSCCC-GGGGTTCCEEECCS-S------CCCCCCGGGGGC-TTCC
T ss_pred             cchhhhhhhhcccccccCccCceEEEecCC---CCCCCcC-ccccccCcEeecCc-c------cccccchhhhcC-CCCC
Confidence             10000      0000  124667777776   2223444 66666666666666 4      22  56 66666 6677


Q ss_pred             EEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccce--EEcCCCccCccEEEEecCcccCCCh--
Q 043839          293 QLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEW--TMGAGSMPKLESLILNPCAYLRKLP--  368 (415)
Q Consensus       293 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~~~~lp--  368 (415)
                      .|++++|.+++ +| .++.+              ++|++|++++| .++.+  |..++.+++|+.|++++|+..+..|  
T Consensus       490 ~L~Ls~N~l~~-lp-~l~~l--------------~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          490 VLQASDNALEN-VD-GVANL--------------PRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             EEECCSSCCCC-CG-GGTTC--------------SSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             EEECCCCCCCC-Cc-ccCCC--------------CCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            77777666643 33 44443              34445555666 55555  6677778888888888887664333  


Q ss_pred             -hhhcCCCCCCeEE
Q 043839          369 -EELWCIKNLCKLE  381 (415)
Q Consensus       369 -~~l~~l~~L~~L~  381 (415)
                       ..+..+++|+.|+
T Consensus       553 ~~l~~~lp~L~~L~  566 (567)
T 1dce_A          553 ERLAEMLPSVSSIL  566 (567)
T ss_dssp             THHHHHCTTCSEEE
T ss_pred             HHHHHHCcccCccC
Confidence             1223367777775

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.40  E-value=1.9e-12  Score=130.11  Aligned_cols=90  Identities=17%  Similarity=0.159  Sum_probs=59.0

Q ss_pred             CCceEEEEEccccCCCCchhhcCCCCCCeEeecc--CCCC----CcccEEEeccCCCccceEEcCCCccCc-------cE
Q 043839          289 PTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ--NSSF----PLLKILHLKSMLWLEEWTMGAGSMPKL-------ES  355 (415)
Q Consensus       289 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~--~~~~----~~L~~L~l~~~~~l~~l~~~~~~l~~L-------~~  355 (415)
                      ++|+.|++++|.+++ +|.   .+++|+.|++++  ...+    ++|++|++++| .++.+|. +..  +|       +.
T Consensus       140 ~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~  211 (571)
T 3cvr_A          140 ALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPELPESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIF  211 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-CC----------CCEE
T ss_pred             ccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcchhhCCCCEEECcCC-CCCchhh-HHH--hhhcccccceE
Confidence            445555555554432 222   344555555544  1111    57888888888 6778877 444  77       99


Q ss_pred             EEEecCcccCCChhhhcCCCCCCeEEEecCCh
Q 043839          356 LILNPCAYLRKLPEELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       356 L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~~  387 (415)
                      |++++|... .+|..+..+++|+.|++++++-
T Consensus       212 L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          212 FRCRENRIT-HIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             EECCSSCCC-CCCGGGGGSCTTEEEECCSSSC
T ss_pred             EecCCCcce-ecCHHHhcCCCCCEEEeeCCcC
Confidence            999999776 6999898999999999999874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.38  E-value=3.9e-13  Score=122.38  Aligned_cols=142  Identities=21%  Similarity=0.186  Sum_probs=74.3

Q ss_pred             hccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceec
Q 043839          146 CKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFIS  219 (415)
Q Consensus       146 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~  219 (415)
                      +..+++|++|++++|.++.+| .+..+++|++|++++      +.++++++|++|++++|.+ ..+|... . ++|++|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l-~~l~~~~-~-~~L~~L~  112 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRL-KNLNGIP-S-ACLSRLF  112 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC-SCCTTCC-C-SSCCEEE
T ss_pred             hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCcc-CCcCccc-c-CcccEEE
Confidence            566777777777777777666 566666666666666      2255556666666663333 2233322 2 5566666


Q ss_pred             cccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEc
Q 043839          220 AVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSN  298 (415)
Q Consensus       220 l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~  298 (415)
                      +.++. ..++ .++.+++|+.|++++|.  . ..++ .+..+++|+.|++++ |.+-.    ++.+..+ ++|+.|++++
T Consensus       113 L~~N~l~~~~-~l~~l~~L~~L~Ls~N~--i-~~~~-~l~~l~~L~~L~L~~-N~i~~----~~~l~~l-~~L~~L~l~~  181 (263)
T 1xeu_A          113 LDNNELRDTD-SLIHLKNLEILSIRNNK--L-KSIV-MLGFLSKLEVLDLHG-NEITN----TGGLTRL-KKVNWIDLTG  181 (263)
T ss_dssp             CCSSCCSBSG-GGTTCTTCCEEECTTSC--C-CBCG-GGGGCTTCCEEECTT-SCCCB----CTTSTTC-CCCCEEEEEE
T ss_pred             ccCCccCCCh-hhcCcccccEEECCCCc--C-CCCh-HHccCCCCCEEECCC-CcCcc----hHHhccC-CCCCEEeCCC
Confidence            66555 3332 35556666666665552  2 1222 344555555555555 21000    2233444 5555555555


Q ss_pred             cccC
Q 043839          299 TKLM  302 (415)
Q Consensus       299 ~~l~  302 (415)
                      |.+.
T Consensus       182 N~~~  185 (263)
T 1xeu_A          182 QKCV  185 (263)
T ss_dssp             EEEE
T ss_pred             Cccc
Confidence            5543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.38  E-value=4e-13  Score=139.53  Aligned_cols=159  Identities=14%  Similarity=0.017  Sum_probs=98.5

Q ss_pred             CCCceeEEEEEeCCCCCccCCCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCC
Q 043839           98 SLANVKRCFILKDLTEFFPLEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHL  175 (415)
Q Consensus        98 ~~~~~r~l~l~~~~~~~~~~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L  175 (415)
                      ....++++.+. .+.....+...  ...|+.+.+.+...........+..+..++.|++|+|++|.+..+|..++++++|
T Consensus       171 s~~~~~~l~L~-~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L  249 (727)
T 4b8c_D          171 STPLTPKIELF-ANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL  249 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred             cCCccceEEee-CCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence            34457777776 54444333333  4455555544433211112345677999999999999999999999999999999


Q ss_pred             ceEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccC
Q 043839          176 KYLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLS  247 (415)
Q Consensus       176 ~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~  247 (415)
                      ++|+|++       ..++++++|++|+|++|.+. .+|..++.+++|++|++.+|. ..+|..++.+++|+.|++++|  
T Consensus       250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N--  326 (727)
T 4b8c_D          250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN--  326 (727)
T ss_dssp             SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS--
T ss_pred             CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC--
Confidence            9999998       56889999999999966655 889999999999999999999 888999999999999999999  


Q ss_pred             cchhcHHHhhhcc
Q 043839          248 YHHSGVSKSLCEL  260 (415)
Q Consensus       248 ~~~~~~~~~l~~l  260 (415)
                      ...+..|..+..+
T Consensus       327 ~l~~~~p~~~~~~  339 (727)
T 4b8c_D          327 PLEKQFLKILTEK  339 (727)
T ss_dssp             CCCSHHHHHHHHH
T ss_pred             ccCCCChHHHhhc
Confidence            5666666666543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.35  E-value=3.5e-12  Score=113.51  Aligned_cols=148  Identities=14%  Similarity=0.105  Sum_probs=73.6

Q ss_pred             CcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEe
Q 043839          191 LMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKL  268 (415)
Q Consensus       191 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  268 (415)
                      -+.++.+ +.....+|.++.  ++|++|++.++.  ...+..+..+++|+.|++++|  .. ..++..            
T Consensus        21 ~~~v~c~-~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N--~l-~~i~~~------------   82 (229)
T 3e6j_A           21 GTTVDCR-SKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN--QL-GALPVG------------   82 (229)
T ss_dssp             TTEEECT-TSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CC-CCCCTT------------
T ss_pred             CCEeEcc-CCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC--CC-CCcChh------------
Confidence            3455555 444455665543  566777776666  333455666666666666666  22 222111            


Q ss_pred             ecCcccccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCC
Q 043839          269 VNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAG  348 (415)
Q Consensus       269 ~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~  348 (415)
                                    .+..+ ++|+.|++++|.++...+..++.+++|+              +|++++| .++.+|..+.
T Consensus        83 --------------~~~~l-~~L~~L~Ls~N~l~~l~~~~~~~l~~L~--------------~L~Ls~N-~l~~lp~~~~  132 (229)
T 3e6j_A           83 --------------VFDSL-TQLTVLDLGTNQLTVLPSAVFDRLVHLK--------------ELFMCCN-KLTELPRGIE  132 (229)
T ss_dssp             --------------TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCC--------------EEECCSS-CCCSCCTTGG
T ss_pred             --------------hcccC-CCcCEEECCCCcCCccChhHhCcchhhC--------------eEeccCC-cccccCcccc
Confidence                          23445 5555555555555433333333333333              3333444 3445555555


Q ss_pred             CccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          349 SMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       349 ~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      .+++|+.|++++|....-.+..+..+++|+.|++.++|
T Consensus       133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            55555555555554442222334555555555555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.35  E-value=4.5e-12  Score=115.32  Aligned_cols=156  Identities=17%  Similarity=0.166  Sum_probs=103.1

Q ss_pred             cCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccc
Q 043839          148 KFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAV  221 (415)
Q Consensus       148 ~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~  221 (415)
                      .+..+..++++++.++.++ .+..+++|++|++++      +.++.+++|++|++++|.+ ..+|. ++.+++|++|++.
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEECC
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEECC
Confidence            3455666677777777666 567777788887777      5566677788888874443 34444 7777788888887


Q ss_pred             cCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEc
Q 043839          222 HPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSN  298 (415)
Q Consensus       222 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~  298 (415)
                      ++. ..++... . ++|+.|++++|.  .. .+ +.+..+++|+.|++++ |      ++  +|.+..+ ++|+.|++++
T Consensus        94 ~N~l~~l~~~~-~-~~L~~L~L~~N~--l~-~~-~~l~~l~~L~~L~Ls~-N------~i~~~~~l~~l-~~L~~L~L~~  159 (263)
T 1xeu_A           94 RNRLKNLNGIP-S-ACLSRLFLDNNE--LR-DT-DSLIHLKNLEILSIRN-N------KLKSIVMLGFL-SKLEVLDLHG  159 (263)
T ss_dssp             SSCCSCCTTCC-C-SSCCEEECCSSC--CS-BS-GGGTTCTTCCEEECTT-S------CCCBCGGGGGC-TTCCEEECTT
T ss_pred             CCccCCcCccc-c-CcccEEEccCCc--cC-CC-hhhcCcccccEEECCC-C------cCCCChHHccC-CCCCEEECCC
Confidence            777 5554432 2 778888887772  22 22 3467777788888777 4      22  4455667 7788888888


Q ss_pred             cccCCCCchhhcCCCCCCeEeecc
Q 043839          299 TKLMEDPMPTLEKLPLLEVLKLKQ  322 (415)
Q Consensus       299 ~~l~~~~~~~l~~l~~L~~L~l~~  322 (415)
                      |.+.+.  ..++.+++|+.|++++
T Consensus       160 N~i~~~--~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          160 NEITNT--GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             SCCCBC--TTSTTCCCCCEEEEEE
T ss_pred             CcCcch--HHhccCCCCCEEeCCC
Confidence            777544  5566666666666654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.34  E-value=4.5e-12  Score=112.08  Aligned_cols=137  Identities=15%  Similarity=0.153  Sum_probs=70.0

Q ss_pred             cEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC
Q 043839          153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS  224 (415)
Q Consensus       153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~  224 (415)
                      +.++++++.++.+|..+.  .+|+.|++++        ..+..+++|++|++++|.+....|..+..+++|++|+++++.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            567777777777776553  3455555544        133344444444554444433334445555555555555554


Q ss_pred             -CCCccc-cCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEccccC
Q 043839          225 -SCTPDI-LGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLM  302 (415)
Q Consensus       225 -~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~  302 (415)
                       ..+|.. +..+++|+.|++++|  ......+.                           .+..+ ++|+.|++++|.++
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N--~l~~~~~~---------------------------~~~~l-~~L~~L~L~~N~l~  141 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNAN--KINCLRVD---------------------------AFQDL-HNLNLLSLYDNKLQ  141 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSS--CCCCCCTT---------------------------TTTTC-TTCCEEECCSSCCS
T ss_pred             CCccCHhHccCCCCCCEEECCCC--CCCEeCHH---------------------------HcCCC-CCCCEEECCCCcCC
Confidence             333332 344555555555554  12222222                           45555 66666666666665


Q ss_pred             CCCchhhcCCCCCCeEeec
Q 043839          303 EDPMPTLEKLPLLEVLKLK  321 (415)
Q Consensus       303 ~~~~~~l~~l~~L~~L~l~  321 (415)
                      +..+..++.+++|+.|+++
T Consensus       142 ~~~~~~~~~l~~L~~L~L~  160 (220)
T 2v9t_B          142 TIAKGTFSPLRAIQTMHLA  160 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECC
T ss_pred             EECHHHHhCCCCCCEEEeC
Confidence            5444455555555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.33  E-value=4.3e-14  Score=142.54  Aligned_cols=180  Identities=18%  Similarity=0.161  Sum_probs=130.7

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc-------------cc-cCcccccCccCCceEe-cCc---
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV-------------LD-LYPPGLENLFHLKYLK-LIT---  182 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~-~lp~~i~~l~~L~~L~-l~~---  182 (415)
                      .++++.|.+.++..     ..+|..++++++|+.|+++++.             .. ..|..++.+++|+.|+ ++.   
T Consensus       348 ~~~L~~L~Ls~n~L-----~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~  422 (567)
T 1dce_A          348 DEQLFRCELSVEKS-----TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL  422 (567)
T ss_dssp             TTTSSSCCCCHHHH-----HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             CccceeccCChhhH-----HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence            56666666666654     2467889999999999998774             23 5667788888999888 443   


Q ss_pred             ----------cccccc--ccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcc
Q 043839          183 ----------PLLKLM--QKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYH  249 (415)
Q Consensus       183 ----------~~i~~l--~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~  249 (415)
                                ..+..+  ..|+.|++++|.+ ..+|. ++.+++|++|+++++. ..+|..++.+++|+.|++++|.  .
T Consensus       423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~--l  498 (567)
T 1dce_A          423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA--L  498 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC--C
T ss_pred             chhhhhhhhcccccccCccCceEEEecCCCC-CCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC--C
Confidence                      122222  3588999995544 45776 8999999999999998 8888889999999999999982  3


Q ss_pred             hhcHHHhhhccCCCcEEEeecCccccccccc--c--c-CCCCCCCCceEEEEEccccCCCCch---hhcCCCCCCeEe
Q 043839          250 HSGVSKSLCELHKLECLKLVNEGKMWQFSRM--I--L-SEYKFPPTLTQLSLSNTKLMEDPMP---TLEKLPLLEVLK  319 (415)
Q Consensus       250 ~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--l--p-~~~~lp~~L~~L~l~~~~l~~~~~~---~l~~l~~L~~L~  319 (415)
                       ..+| .++.+++|+.|++++ |      ++  +  | .+..+ ++|+.|++++|.+++.++.   .+..+|+|+.|+
T Consensus       499 -~~lp-~l~~l~~L~~L~Ls~-N------~l~~~~~p~~l~~l-~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          499 -ENVD-GVANLPRLQELLLCN-N------RLQQSAAIQPLVSC-PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             -CCCG-GGTTCSSCCEEECCS-S------CCCSSSTTGGGGGC-TTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             -CCCc-ccCCCCCCcEEECCC-C------CCCCCCCcHHHhcC-CCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence             3356 788888888888887 4      33  4  6 77778 7888888888877554332   233467777665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.33  E-value=8.1e-12  Score=111.17  Aligned_cols=76  Identities=13%  Similarity=0.103  Sum_probs=47.7

Q ss_pred             ccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-
Q 043839          152 LRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-  229 (415)
Q Consensus       152 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-  229 (415)
                      -+.++.+++.++.+|..+.  +                +|++|++++|.+....|..++.+++|++|++.++. ..++. 
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~----------------~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~   82 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--T----------------NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG   82 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--T----------------TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCEeEccCCCcCccCCCCC--C----------------CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh
Confidence            4567777777777776543  3                44444455455555556666667777777777766 44443 


Q ss_pred             ccCCCCCCCeEEEecc
Q 043839          230 ILGRLPNVQTLRISGD  245 (415)
Q Consensus       230 ~l~~l~~L~~L~l~~~  245 (415)
                      .+..+++|+.|++++|
T Consensus        83 ~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           83 VFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTTTCTTCCEEECCSS
T ss_pred             hcccCCCcCEEECCCC
Confidence            3566777777777776

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.32  E-value=3.4e-12  Score=121.67  Aligned_cols=158  Identities=18%  Similarity=0.201  Sum_probs=87.0

Q ss_pred             cEEEcCCcccccCcccccCccCCceEecCc--------cccc-ccccCcEEEecCCCCCCCCCCcccCccccceeccccC
Q 043839          153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLK-LMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHP  223 (415)
Q Consensus       153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~-~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~  223 (415)
                      ++++++++.++.+|..+.  ..+++|++++        ..+. ++++|++|++++|.+....+..+..+++|++|+++++
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            345555555555554332  2344555544        1222 5556666666644444334445666666677666666


Q ss_pred             C-CCCc-cccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc-C-C---CCCCCCceEE
Q 043839          224 S-SCTP-DILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL-S-E---YKFPPTLTQL  294 (415)
Q Consensus       224 ~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp-~-~---~~lp~~L~~L  294 (415)
                      . ..++ ..+..+++|+.|++++|  ......+..+..+++|+.|++++ |      ++  +| . +   ..+ ++|+.|
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N--~i~~~~~~~~~~l~~L~~L~L~~-N------~l~~l~~~~~~~~~~l-~~L~~L  168 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNN--HIVVVDRNAFEDMAQLQKLYLSQ-N------QISRFPVELIKDGNKL-PKLMLL  168 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCS-S------CCCSCCGGGTC----C-TTCCEE
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCC--cccEECHHHhCCcccCCEEECCC-C------cCCeeCHHHhcCcccC-CcCCEE
Confidence            6 3333 23566667777777666  33333455566666666666666 4      22  44 2 2   346 677777


Q ss_pred             EEEccccCCCCchhhcCCCCC--CeEeecc
Q 043839          295 SLSNTKLMEDPMPTLEKLPLL--EVLKLKQ  322 (415)
Q Consensus       295 ~l~~~~l~~~~~~~l~~l~~L--~~L~l~~  322 (415)
                      ++++|.++...+..+..++.+  +.|++.+
T Consensus       169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             ECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             ECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence            777777665555566666653  5566654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.32  E-value=6e-12  Score=111.28  Aligned_cols=141  Identities=16%  Similarity=0.145  Sum_probs=68.1

Q ss_pred             cEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCC-CcccCccccceeccccCC-CCCc-c
Q 043839          153 RVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPN-NYSSSLKDLIFISAVHPS-SCTP-D  229 (415)
Q Consensus       153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~-~~~~-~  229 (415)
                      ++++++++.++.+|..+..  .+++|++++                |.+....| ..++.+++|++|++.++. ..++ .
T Consensus        14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~----------------N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~   75 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNN----------------NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG   75 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCT--TCSEEECCS----------------SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT
T ss_pred             CEeEeCCCCcccCccCCCC--CCCEEEcCC----------------CcCCccCchhhhccCCCCCEEECCCCcCCEECHH
Confidence            5778888877777765532  334555444                22222212 123444444444444444 2222 2


Q ss_pred             ccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--c-c-CCCCCCCCceEEEEEccccCCCC
Q 043839          230 ILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--I-L-SEYKFPPTLTQLSLSNTKLMEDP  305 (415)
Q Consensus       230 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--l-p-~~~~lp~~L~~L~l~~~~l~~~~  305 (415)
                      .++.+++|++|++++|  ......+..+..+++|+.|++++ |      ++  + | .+..+ ++|+.|++++|.+++..
T Consensus        76 ~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~Ls~-N------~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~  145 (220)
T 2v70_A           76 AFEGASGVNEILLTSN--RLENVQHKMFKGLESLKTLMLRS-N------RITCVGNDSFIGL-SSVRLLSLYDNQITTVA  145 (220)
T ss_dssp             TTTTCTTCCEEECCSS--CCCCCCGGGGTTCSSCCEEECTT-S------CCCCBCTTSSTTC-TTCSEEECTTSCCCCBC
T ss_pred             HhCCCCCCCEEECCCC--ccCccCHhHhcCCcCCCEEECCC-C------cCCeECHhHcCCC-ccCCEEECCCCcCCEEC
Confidence            3444444444444444  22222233344444444444444 2      11  2 3 45556 66666666666665555


Q ss_pred             chhhcCCCCCCeEeec
Q 043839          306 MPTLEKLPLLEVLKLK  321 (415)
Q Consensus       306 ~~~l~~l~~L~~L~l~  321 (415)
                      +..++.+++|+.|+++
T Consensus       146 ~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A          146 PGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             TTTTTTCTTCCEEECC
T ss_pred             HHHhcCCCCCCEEEec
Confidence            5555555555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.30  E-value=1.4e-11  Score=108.91  Aligned_cols=131  Identities=14%  Similarity=0.110  Sum_probs=78.0

Q ss_pred             CCCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCccccc-CcccccCccCCceEecCc-------
Q 043839          111 LTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDL-YPPGLENLFHLKYLKLIT-------  182 (415)
Q Consensus       111 ~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~-------  182 (415)
                      .....++....++++.|.+.++..    ..+.+..|..+++|++|++++|.++. .|..+.++++|++|++++       
T Consensus        21 ~~l~~iP~~l~~~l~~L~l~~n~i----~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~   96 (220)
T 2v9t_B           21 KGLTEIPTNLPETITEIRLEQNTI----KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP   96 (220)
T ss_dssp             SCCSSCCSSCCTTCCEEECCSSCC----CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             CCcCcCCCccCcCCCEEECCCCcC----CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC
Confidence            333344444466788888887776    44555567788888888888888773 366677777777776665       


Q ss_pred             -ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-ccCCCCCCCeEEEecc
Q 043839          183 -PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-ILGRLPNVQTLRISGD  245 (415)
Q Consensus       183 -~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~  245 (415)
                       ..+..+++|++|++++|.+....|..+..+++|++|++.++. ..++. .+..+++|+.|++++|
T Consensus        97 ~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           97 KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence             123445555555555444444444455555555555555555 33322 3455555555555555

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.29  E-value=3.2e-12  Score=105.62  Aligned_cols=120  Identities=14%  Similarity=0.106  Sum_probs=87.9

Q ss_pred             cCCcccEEEcCCcccc--cCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceec
Q 043839          148 KFKHLRVLNLGSAVLD--LYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFIS  219 (415)
Q Consensus       148 ~~~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~  219 (415)
                      ..++|++|++++|.++  .+|..++.+++|++|++++      ..++++++|++|++++|.+...+|..++.+++|++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            4467888888888877  7777777788888888777      4556677788888886666665777777788888888


Q ss_pred             cccCC-CCCc--cccCCCCCCCeEEEecccCcchhcHH---HhhhccCCCcEEEee
Q 043839          220 AVHPS-SCTP--DILGRLPNVQTLRISGDLSYHHSGVS---KSLCELHKLECLKLV  269 (415)
Q Consensus       220 l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~L~~L~l~  269 (415)
                      ++++. ..++  ..++.+++|++|++++|  ...+..+   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC--EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTC--GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCC--cccchHHHHHHHHHHCCCcccccCC
Confidence            88887 5443  67788888888888887  2333222   367778888887764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.28  E-value=8.3e-12  Score=105.35  Aligned_cols=122  Identities=16%  Similarity=0.127  Sum_probs=78.3

Q ss_pred             ccCCcccEEEcCCcccc--cCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCcccccee
Q 043839          147 KKFKHLRVLNLGSAVLD--LYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFI  218 (415)
Q Consensus       147 ~~~~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L  218 (415)
                      ...++|++|++++|.++  .+|..+..+++|++|++++      ..+..+++|++|++++|.+...+|..++.+++|++|
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            34477888888888887  7777777777777777766      345556667777777555555566656667777777


Q ss_pred             ccccCC-CCCc--cccCCCCCCCeEEEecccCcchhcHH---HhhhccCCCcEEEeec
Q 043839          219 SAVHPS-SCTP--DILGRLPNVQTLRISGDLSYHHSGVS---KSLCELHKLECLKLVN  270 (415)
Q Consensus       219 ~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~L~~L~l~~  270 (415)
                      ++.++. ..++  ..+..+++|+.|++++|.  .....+   ..+..+++|+.|+++.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE--VTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG--GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCc--CcchHHHHHHHHHhCccCcEecCCC
Confidence            777776 4443  566677777777777762  222211   2455555555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.27  E-value=6.5e-12  Score=103.76  Aligned_cols=124  Identities=17%  Similarity=0.224  Sum_probs=100.7

Q ss_pred             ccccCcEEEecCCCCC-CCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCc
Q 043839          187 LMQKLMHLNFGSITMP-SPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLE  264 (415)
Q Consensus       187 ~l~~L~~L~l~~~~~~-~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~  264 (415)
                      ..++|+.|++++|.+. +.+|..++.+++|++|++.++. ..+ ..++.+++|+.|++++|  ...+.+|..+..+++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN--RVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS--CCCSCTHHHHHHCTTCC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC--cccchHHHHhhhCCCCC
Confidence            3477889999977765 5888888999999999999998 555 77899999999999999  45555788888899999


Q ss_pred             EEEeecCccccccccc--c--c-CCCCCCCCceEEEEEccccCCCCc---hhhcCCCCCCeEeec
Q 043839          265 CLKLVNEGKMWQFSRM--I--L-SEYKFPPTLTQLSLSNTKLMEDPM---PTLEKLPLLEVLKLK  321 (415)
Q Consensus       265 ~L~l~~~~~il~~l~L--l--p-~~~~lp~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l~  321 (415)
                      .|++++ +      ++  +  | .+..+ ++|++|++++|.+++..+   ..++.+++|+.|+++
T Consensus        92 ~L~ls~-N------~i~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSG-N------KIKDLSTIEPLKKL-ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTT-S------CCCSHHHHGGGGGC-TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCC-C------cCCChHHHHHHhhC-CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            999988 5      22  2  2 66788 899999999998876554   478888888888875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.27  E-value=5.9e-13  Score=138.23  Aligned_cols=143  Identities=11%  Similarity=0.044  Sum_probs=94.5

Q ss_pred             ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccC
Q 043839          183 PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELH  261 (415)
Q Consensus       183 ~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~  261 (415)
                      ..+..+++|+.|++++|. ...+|..+..+++|++|+++++. ..+|..++.+++|+.|++++|  ... .+|..++.++
T Consensus       218 ~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N--~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN--RLT-SLPAELGSCF  293 (727)
T ss_dssp             ----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS--CCS-SCCSSGGGGT
T ss_pred             hhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC--cCC-ccChhhcCCC
Confidence            345566777777777444 44788888888889999988888 778888888889999999888  333 6788888888


Q ss_pred             CCcEEEeecCccccccccc--cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCC-CCeEeecc---CC-CCCcccEEE
Q 043839          262 KLECLKLVNEGKMWQFSRM--IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPL-LEVLKLKQ---NS-SFPLLKILH  333 (415)
Q Consensus       262 ~L~~L~l~~~~~il~~l~L--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~-L~~L~l~~---~~-~~~~L~~L~  333 (415)
                      +|+.|+++. |      .+  +| .+..+ ++|+.|+|++|.+.+.+|..++.+.. +..+++.+   .+ ....|+.|+
T Consensus       294 ~L~~L~L~~-N------~l~~lp~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~  365 (727)
T 4b8c_D          294 QLKYFYFFD-N------MVTTLPWEFGNL-CNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIE  365 (727)
T ss_dssp             TCSEEECCS-S------CCCCCCSSTTSC-TTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----
T ss_pred             CCCEEECCC-C------CCCccChhhhcC-CCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeE
Confidence            888888887 5      33  78 88888 89999999999887766666654321 11233433   12 233567777


Q ss_pred             eccC
Q 043839          334 LKSM  337 (415)
Q Consensus       334 l~~~  337 (415)
                      ++.+
T Consensus       366 l~~n  369 (727)
T 4b8c_D          366 INTD  369 (727)
T ss_dssp             ----
T ss_pred             eecc
Confidence            7665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.27  E-value=2.5e-11  Score=107.25  Aligned_cols=137  Identities=16%  Similarity=0.160  Sum_probs=75.9

Q ss_pred             EEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccc-hHHHhccCCcccEEEcCCcccccCcc-cccCccCCceEecC
Q 043839          104 RCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGID-CENFCKKFKHLRVLNLGSAVLDLYPP-GLENLFHLKYLKLI  181 (415)
Q Consensus       104 ~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~  181 (415)
                      .+.+. ++....++....+.++.|.+.++...    .+ ....|..+++|++|++++|.++.++. .+.++++|++|+++
T Consensus        15 ~l~~s-~n~l~~iP~~~~~~~~~L~L~~N~l~----~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           15 TVDCS-NQKLNKIPEHIPQYTAELRLNNNEFT----VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             EEECC-SSCCSSCCSCCCTTCSEEECCSSCCC----EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EeEeC-CCCcccCccCCCCCCCEEEcCCCcCC----ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            34444 44444455544556677777777663    22 22346777778888888777774443 56666666666666


Q ss_pred             c--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCC-ccccCCCCCCCeEEEecc
Q 043839          182 T--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCT-PDILGRLPNVQTLRISGD  245 (415)
Q Consensus       182 ~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~  245 (415)
                      +        ..++.+++|++|++++|.+....|..+..+++|++|++.++. ..+ |..+..+++|+.|++++|
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            5        224455555555555444444444455555555555555555 222 444555555555555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.27  E-value=1.4e-11  Score=117.31  Aligned_cols=160  Identities=17%  Similarity=0.075  Sum_probs=110.4

Q ss_pred             EEEEEeCCCCCccCCCCCCceeEEEeecCCCccccccchHHHhc-cCCcccEEEcCCcccccCc-ccccCccCCceEecC
Q 043839          104 RCFILKDLTEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCK-KFKHLRVLNLGSAVLDLYP-PGLENLFHLKYLKLI  181 (415)
Q Consensus       104 ~l~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~  181 (415)
                      .+... +.....++....+.++.|.+.++..    ..+.+..+. ++++|++|++++|.++.++ ..+.++++|++|+++
T Consensus        22 ~l~c~-~~~l~~iP~~~~~~l~~L~Ls~N~l----~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           22 ILSCS-KQQLPNVPQSLPSYTALLDLSHNNL----SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             EEECC-SSCCSSCCSSCCTTCSEEECCSSCC----CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EEEeC-CCCcCccCccCCCCCCEEECCCCCC----CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            34444 4444556655566788898888877    455555666 8889999999999888555 457888888888888


Q ss_pred             c--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcccc----CCCCCCCeEEEecccCc
Q 043839          182 T--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDIL----GRLPNVQTLRISGDLSY  248 (415)
Q Consensus       182 ~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l----~~l~~L~~L~l~~~~~~  248 (415)
                      +        ..+.++++|++|++++|.+....|..+..+++|++|++.++. ..+|..+    ..+++|+.|++++|  .
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N--~  174 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN--K  174 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS--C
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC--C
Confidence            7        346677888888888666665556677888888888888877 5565553    56788888888877  3


Q ss_pred             chhcHHHhhhccCC--CcEEEeec
Q 043839          249 HHSGVSKSLCELHK--LECLKLVN  270 (415)
Q Consensus       249 ~~~~~~~~l~~l~~--L~~L~l~~  270 (415)
                      .....+..+..++.  ++.|++++
T Consensus       175 l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          175 LKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             CCccCHHHhhhccHhhcceEEecC
Confidence            33333345556655  36677666

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.22  E-value=3.4e-11  Score=101.55  Aligned_cols=80  Identities=18%  Similarity=0.246  Sum_probs=59.1

Q ss_pred             cccCcEEEecCCCCC-CCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcE
Q 043839          188 MQKLMHLNFGSITMP-SPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLEC  265 (415)
Q Consensus       188 l~~L~~L~l~~~~~~-~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~  265 (415)
                      .++|++|++++|.+. ..+|..+..+++|++|++.++. ..+ ..++.+++|+.|++++|  .....+|..+..+++|+.
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN--RIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC--CCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC--cCchHHHHHHhhCCCCCE
Confidence            467888888866665 5788888899999999999988 555 77888999999999998  344435555555666666


Q ss_pred             EEeec
Q 043839          266 LKLVN  270 (415)
Q Consensus       266 L~l~~  270 (415)
                      |++++
T Consensus       100 L~Ls~  104 (168)
T 2ell_A          100 LNLSG  104 (168)
T ss_dssp             EECBS
T ss_pred             EeccC
Confidence            66555

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.19  E-value=8.3e-11  Score=110.50  Aligned_cols=92  Identities=17%  Similarity=0.022  Sum_probs=68.6

Q ss_pred             CCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc---------CCCCCccc-EEEeccCCCccceE-EcCCCccCccE
Q 043839          287 FPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLK-ILHLKSMLWLEEWT-MGAGSMPKLES  355 (415)
Q Consensus       287 lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~-~L~l~~~~~l~~l~-~~~~~l~~L~~  355 (415)
                      + ++|+.+++++|.++......+..|++|+.+++.+         ..++++|+ .+.+.+  .++.++ ..+.+|++|+.
T Consensus       225 ~-~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 M-PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             C-TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEE
T ss_pred             c-CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCE
Confidence            5 7888888888777655566788888888888865         45566787 888876  567776 55788999999


Q ss_pred             EEEecCcccCCChhhhcCCCCCCeEE
Q 043839          356 LILNPCAYLRKLPEELWCIKNLCKLE  381 (415)
Q Consensus       356 L~l~~c~~~~~lp~~l~~l~~L~~L~  381 (415)
                      +++.++....--+..+.++++|+.|.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEeCCCccCccchhhhcCCcchhhhc
Confidence            99887765432235788889998875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.13  E-value=7e-11  Score=100.46  Aligned_cols=120  Identities=14%  Similarity=0.116  Sum_probs=73.9

Q ss_pred             hccCCcccEEEcCCcccccCcccccCcc-CCceEecCc------ccccccccCcEEEecCCCCCCCCCCcc-cCccccce
Q 043839          146 CKKFKHLRVLNLGSAVLDLYPPGLENLF-HLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYS-SSLKDLIF  217 (415)
Q Consensus       146 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i-~~l~~L~~  217 (415)
                      +.++.+|++|++++|.++.+|. +..+. +|++|++++      +.++.+++|++|++++|.+. .+|..+ +.+++|++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE   92 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred             cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence            4556677777777777776643 44444 666666666      34555666777777644443 444443 66777777


Q ss_pred             eccccCC-CCCcc--ccCCCCCCCeEEEecccCcchhcHHH----hhhccCCCcEEEeec
Q 043839          218 ISAVHPS-SCTPD--ILGRLPNVQTLRISGDLSYHHSGVSK----SLCELHKLECLKLVN  270 (415)
Q Consensus       218 L~l~~~~-~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~----~l~~l~~L~~L~l~~  270 (415)
                      |+++++. ..++.  .++.+++|+.|++++|.  . ...|.    .+..+++|+.|+++.
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~--i-~~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNP--V-TNKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSG--G-GGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCC--C-CCcHhHHHHHHHHCCccceeCCCc
Confidence            7777776 55554  56677777777777762  2 23333    255666666666655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.12  E-value=1.6e-10  Score=99.72  Aligned_cols=91  Identities=13%  Similarity=0.114  Sum_probs=46.3

Q ss_pred             cEEEcCCcccccCcccccCccCCceEecCc-------c--cccccccCcEEEecCCCCCCCCCCcccCccccceeccccC
Q 043839          153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT-------P--LLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHP  223 (415)
Q Consensus       153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------~--~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~  223 (415)
                      ++++++++.++.+|..+..  +|++|++++       .  .++++++|++|++++|.+....|..++.+++|++|+++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            6788888888877775543  555555554       1  1334444444444444444333444444555555555444


Q ss_pred             C-CCC-ccccCCCCCCCeEEEecc
Q 043839          224 S-SCT-PDILGRLPNVQTLRISGD  245 (415)
Q Consensus       224 ~-~~~-~~~l~~l~~L~~L~l~~~  245 (415)
                      . ..+ +..++.+++|++|++++|
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N  112 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSS
T ss_pred             cCCccCHHHhcCCCCCCEEECCCC
Confidence            4 222 222444444444444444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.02  E-value=1.1e-08  Score=98.62  Aligned_cols=239  Identities=9%  Similarity=0.032  Sum_probs=161.1

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCccc-ccCccCCceEecCc-------ccccccccCc
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPG-LENLFHLKYLKLIT-------PLLKLMQKLM  192 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~-------~~i~~l~~L~  192 (415)
                      +..++++.+...-     ..+....|.++ +|+.+.+..+ ++.++.. +.+ .+|+.+.+..       ..+.+|.+|+
T Consensus       112 ~~~l~~i~ip~~i-----~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          112 LKGYNEIILPNSV-----KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPSTLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             CSSCSEEECCTTC-----CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCTTCCEECSSTTTTCTTCC
T ss_pred             cCCccEEEECCcc-----CEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCCCccEehHHHhhCcccCC
Confidence            3445555544322     23334556665 6888888765 5555443 334 4688888776       5677889999


Q ss_pred             EEEecCCCCCCCCCCcccCccccceeccccCCCCC-ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecC
Q 043839          193 HLNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCT-PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNE  271 (415)
Q Consensus       193 ~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  271 (415)
                      .+++. .+....++.+.-...+|+.+.+...-..+ ...+..|++|+.+.+..+   ....-...+.. .+|+.+.+.. 
T Consensus       184 ~l~l~-~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~---l~~I~~~aF~~-~~L~~i~lp~-  257 (401)
T 4fdw_A          184 KADLS-KTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN---VSTIGQEAFRE-SGITTVKLPN-  257 (401)
T ss_dssp             EEECT-TSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT---CCEECTTTTTT-CCCSEEEEET-
T ss_pred             eeecC-CCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC---ccCcccccccc-CCccEEEeCC-
Confidence            99998 44455566654446889988887543333 344778999999999765   22222233444 6899998865 


Q ss_pred             ccccccccc--cc--CCCCCCCCceEEEEEccccC-----CCCchhhcCCCCCCeEeecc---------CCCCCcccEEE
Q 043839          272 GKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLM-----EDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKILH  333 (415)
Q Consensus       272 ~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~-----~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~~L~  333 (415)
                             .+  ++  .+..+ ++|+.+.+.++.+.     ......+..|++|+.+.+..         ..++++|+.+.
T Consensus       258 -------~i~~I~~~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~  329 (401)
T 4fdw_A          258 -------GVTNIASRAFYYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLT  329 (401)
T ss_dssp             -------TCCEECTTTTTTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEE
T ss_pred             -------CccEEChhHhhCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEE
Confidence                   23  54  77788 99999999988653     23455788899999999876         45668899999


Q ss_pred             eccCCCccceE-EcCCCccCccEEEEecCcccCCChhhhcCCC-CCCeEEEec
Q 043839          334 LKSMLWLEEWT-MGAGSMPKLESLILNPCAYLRKLPEELWCIK-NLCKLELHW  384 (415)
Q Consensus       334 l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~-~L~~L~l~~  384 (415)
                      |..  +++.+. ..+.++ +|+.+.+.++....-.+..+..++ +++.|.+..
T Consensus       330 lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          330 IPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             ECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             ECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence            965  466665 347778 999999999865433334555664 778888765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.01  E-value=7.5e-10  Score=95.48  Aligned_cols=116  Identities=14%  Similarity=0.107  Sum_probs=65.1

Q ss_pred             cEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc--ccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEe
Q 043839          192 MHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD--ILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKL  268 (415)
Q Consensus       192 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  268 (415)
                      ++++++++ ....+|..+..  +|++|++.++. ..++.  .++.+++|++|++++|  ...+..|..+..+++|+.|++
T Consensus        11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN--QLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS--CCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC--CCCCcCHhHcCCcccCCEEEC
Confidence            56666633 34566665543  77777777777 54443  2677777777777777  344444455555555555555


Q ss_pred             ecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEee
Q 043839          269 VNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKL  320 (415)
Q Consensus       269 ~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  320 (415)
                      ++ |      ++  ++  .+..+ ++|++|++++|.+++..+..++.+++|++|++
T Consensus        86 s~-N------~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           86 GE-N------KIKEISNKMFLGL-HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             CS-C------CCCEECSSSSTTC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             CC-C------cCCccCHHHhcCC-CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence            55 3      22  22  34555 55555555555554444444444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.01  E-value=1.5e-09  Score=93.64  Aligned_cols=17  Identities=24%  Similarity=0.473  Sum_probs=9.2

Q ss_pred             cEEEcCCcccccCcccc
Q 043839          153 RVLNLGSAVLDLYPPGL  169 (415)
Q Consensus       153 ~~L~l~~~~~~~lp~~i  169 (415)
                      ++++++++.++.+|..+
T Consensus        13 ~~l~~~~~~l~~ip~~~   29 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI   29 (193)
T ss_dssp             TEEECTTSCCSSCCSCC
T ss_pred             CEEEcCCCCCCcCCCCC
Confidence            45556665555555433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.99  E-value=6.3e-11  Score=102.80  Aligned_cols=101  Identities=16%  Similarity=0.167  Sum_probs=64.9

Q ss_pred             hHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCccc
Q 043839          142 CENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKD  214 (415)
Q Consensus       142 ~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~  214 (415)
                      ++..+.++++|++|++++|.++.+| .+.++++|++|++++       ..+..+++|++|++++|.+. .+| .++.+++
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~  116 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SLS-GIEKLVN  116 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHHHH
T ss_pred             hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC-cCC-ccccCCC
Confidence            3457888888999999888888877 777777777777776       22233456666666644333 233 4556666


Q ss_pred             cceeccccCC-CCCcc--ccCCCCCCCeEEEecc
Q 043839          215 LIFISAVHPS-SCTPD--ILGRLPNVQTLRISGD  245 (415)
Q Consensus       215 L~~L~l~~~~-~~~~~--~l~~l~~L~~L~l~~~  245 (415)
                      |++|++.++. ..++.  .+..+++|+.|++++|
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence            6666666665 33332  4566666666666665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.97  E-value=2e-09  Score=92.93  Aligned_cols=51  Identities=8%  Similarity=0.014  Sum_probs=29.1

Q ss_pred             cEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecc
Q 043839          192 MHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGD  245 (415)
Q Consensus       192 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~  245 (415)
                      ++++++ ++....+|.++.  ++|++|++.++. ..+|..+..+++|+.|++++|
T Consensus        13 ~~l~~~-~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N   64 (193)
T 2wfh_A           13 TVVRCS-NKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN   64 (193)
T ss_dssp             TEEECT-TSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS
T ss_pred             CEEEcC-CCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC
Confidence            345555 333445555443  456666666666 555556666666666666665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.97  E-value=1e-11  Score=107.90  Aligned_cols=127  Identities=17%  Similarity=0.164  Sum_probs=69.6

Q ss_pred             hccCCcccEEEcCCcccc-cCc------ccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCcccccee
Q 043839          146 CKKFKHLRVLNLGSAVLD-LYP------PGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFI  218 (415)
Q Consensus       146 ~~~~~~L~~L~l~~~~~~-~lp------~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L  218 (415)
                      +.....++.++++++.+. ..|      ..++++++|++|                ++++|.+. .+| .++.+++|++|
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L----------------~ls~n~l~-~l~-~~~~l~~L~~L   75 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHL----------------ALSTNNIE-KIS-SLSGMENLRIL   75 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEE----------------ECSEEEES-CCC-CHHHHTTCCEE
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEE----------------ECCCCCCc-ccc-ccccCCCCCEE
Confidence            445556666666655554 333      345444444444                44434332 255 56667777777


Q ss_pred             ccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc---CCCCCCCCce
Q 043839          219 SAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL---SEYKFPPTLT  292 (415)
Q Consensus       219 ~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp---~~~~lp~~L~  292 (415)
                      ++.++. ..+|..+..+++|+.|++++|   ....++ .+..+++|+.|++++ |      ++  +|   .+..+ ++|+
T Consensus        76 ~l~~n~l~~l~~~~~~~~~L~~L~L~~N---~l~~l~-~~~~l~~L~~L~l~~-N------~i~~~~~~~~l~~l-~~L~  143 (198)
T 1ds9_A           76 SLGRNLIKKIENLDAVADTLEELWISYN---QIASLS-GIEKLVNLRVLYMSN-N------KITNWGEIDKLAAL-DKLE  143 (198)
T ss_dssp             EEEEEEECSCSSHHHHHHHCSEEEEEEE---ECCCHH-HHHHHHHSSEEEESE-E------ECCCHHHHHHHTTT-TTCS
T ss_pred             ECCCCCcccccchhhcCCcCCEEECcCC---cCCcCC-ccccCCCCCEEECCC-C------cCCchhHHHHHhcC-CCCC
Confidence            777766 666666666677777777776   222344 455556666666655 3      11  11   24445 5666


Q ss_pred             EEEEEccccC
Q 043839          293 QLSLSNTKLM  302 (415)
Q Consensus       293 ~L~l~~~~l~  302 (415)
                      +|++++|.+.
T Consensus       144 ~L~l~~N~l~  153 (198)
T 1ds9_A          144 DLLLAGNPLY  153 (198)
T ss_dssp             EEEECSCHHH
T ss_pred             EEEecCCccc
Confidence            6666666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.95  E-value=4.2e-09  Score=98.81  Aligned_cols=113  Identities=12%  Similarity=0.026  Sum_probs=81.6

Q ss_pred             CCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCchhh
Q 043839          234 LPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTL  309 (415)
Q Consensus       234 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l  309 (415)
                      ..++..+.+.+.  ............+++|+.+++.. +      ++  +|  .|..+ .+|+.+++.++ ++......+
T Consensus       201 ~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~-n------~i~~I~~~aF~~~-~~L~~l~l~~n-i~~I~~~aF  269 (329)
T 3sb4_A          201 PRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISK-T------NATTIPDFTFAQK-KYLLKIKLPHN-LKTIGQRVF  269 (329)
T ss_dssp             GGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTT-B------CCCEECTTTTTTC-TTCCEEECCTT-CCEECTTTT
T ss_pred             ccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCC-C------CcceecHhhhhCC-CCCCEEECCcc-cceehHHHh
Confidence            344555555554  12222222223478999999987 4      23  66  67888 99999999987 555556788


Q ss_pred             cCCCCCC-eEeecc---------CCCCCcccEEEeccCCCccceEE-cCCCccCccEEEE
Q 043839          310 EKLPLLE-VLKLKQ---------NSSFPLLKILHLKSMLWLEEWTM-GAGSMPKLESLIL  358 (415)
Q Consensus       310 ~~l~~L~-~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l  358 (415)
                      ..|++|+ .+.+.+         ..++++|+.+++..+ .++.++. .+.++++|+.+..
T Consensus       270 ~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          270 SNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred             hCChhccEEEEEcccceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence            9999999 999976         556789999999877 7787774 5889999998863

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.94  E-value=7.4e-10  Score=94.05  Aligned_cols=118  Identities=14%  Similarity=0.162  Sum_probs=90.7

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc-------cc-ccccccCc
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT-------PL-LKLMQKLM  192 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------~~-i~~l~~L~  192 (415)
                      +++++.|.+.++...    .+ +......++|++|++++|.++.+ ..+..+++|++|++++       +. ++.+++|+
T Consensus        18 ~~~L~~L~l~~n~l~----~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           18 AVRDRELDLRGYKIP----VI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             TTSCEEEECTTSCCC----SC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCceEEEeeCCCCc----hh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            667888888877663    22 23333334888888888888766 5677888888888888       23 37788999


Q ss_pred             EEEecCCCCCCCCCC--cccCccccceeccccCC-CCCccc----cCCCCCCCeEEEecc
Q 043839          193 HLNFGSITMPSPPNN--YSSSLKDLIFISAVHPS-SCTPDI----LGRLPNVQTLRISGD  245 (415)
Q Consensus       193 ~L~l~~~~~~~~~p~--~i~~l~~L~~L~l~~~~-~~~~~~----l~~l~~L~~L~l~~~  245 (415)
                      +|++++|.+ ..+|.  .++.+++|++|++.++. ...|..    ++.+++|+.|+++.+
T Consensus        92 ~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           92 ELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             EEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             EEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            999995554 66776  78899999999999998 666664    889999999999988

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.91  E-value=8.3e-09  Score=87.53  Aligned_cols=106  Identities=19%  Similarity=0.215  Sum_probs=62.7

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCC
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSIT  200 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~  200 (415)
                      .++++.|.+.++..    ..+.+..+..+++|++|++++|.++.+|..               .++.+++|++|++++|.
T Consensus        27 ~~~l~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           27 PSSATRLELESNKL----QSLPHGVFDKLTQLTKLSLSQNQIQSLPDG---------------VFDKLTKLTILYLHENK   87 (177)
T ss_dssp             CTTCSEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCCCCCCTT---------------TTTTCTTCCEEECCSSC
T ss_pred             CCCCcEEEeCCCcc----cEeCHHHhcCcccccEEECCCCcceEeChh---------------HccCCCccCEEECCCCC
Confidence            44555555555544    233333445555555555555555544322               23455666666666555


Q ss_pred             CCCCCCCcccCccccceeccccCC-CCCccc-cCCCCCCCeEEEecc
Q 043839          201 MPSPPNNYSSSLKDLIFISAVHPS-SCTPDI-LGRLPNVQTLRISGD  245 (415)
Q Consensus       201 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~  245 (415)
                      +....+..++.+++|++|++.++. ..++.. +..+++|++|++++|
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            554444456778888888888877 555554 467888888888887

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.90  E-value=7.5e-09  Score=87.78  Aligned_cols=126  Identities=17%  Similarity=0.180  Sum_probs=64.4

Q ss_pred             ccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCcc-
Q 043839          152 LRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPD-  229 (415)
Q Consensus       152 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-  229 (415)
                      .+.++++++.++.+|..+.  .+|++|                ++++|.+....+..++.+++|++|++.++. ..++. 
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L----------------~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~   70 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRL----------------ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG   70 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEE----------------ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEE----------------EeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh
Confidence            4567777777766664432  233333                333333332222234555555555555555 33332 


Q ss_pred             ccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCC
Q 043839          230 ILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDP  305 (415)
Q Consensus       230 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~  305 (415)
                      .++.+++|+.|++++|  ......+..+..+++|+.|++++ |      ++  +|  .+..+ ++|++|++++|.+.+..
T Consensus        71 ~~~~l~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L~l~~-N------~l~~~~~~~~~~l-~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           71 VFDKLTKLTILYLHEN--KLQSLPNGVFDKLTQLKELALDT-N------QLKSVPDGIFDRL-TSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             TTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-S------CCSCCCTTTTTTC-TTCCEEECCSSCBCCCH
T ss_pred             HccCCCccCEEECCCC--CccccCHHHhhCCcccCEEECcC-C------cceEeCHHHhcCC-cccCEEEecCCCeeccC
Confidence            2455555555555555  22222222344555555555555 3      22  44  34567 77888888887765543

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=98.77  E-value=2e-09  Score=108.28  Aligned_cols=71  Identities=25%  Similarity=0.326  Sum_probs=58.0

Q ss_pred             hcccCCCccchHHHHh-----------hcccCCCCceech----hh--------------------HHHhhcCCCeeeee
Q 043839           15 IYSVMGLPFHLKVCYI-----------YLCVYRPSIEIST----RQ--------------------LYQLINPSRLHSSK   59 (415)
Q Consensus        15 ~lSY~~L~~~lk~cfl-----------~~~~fp~~~~i~~----~~--------------------Li~L~~~~li~~~~   59 (415)
                      ++||++||.++|+||+           |||+||+|+.|+.    ..                    +-.|+++||++...
T Consensus       368 ~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~  447 (549)
T 2a5y_B          368 PYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGK  447 (549)
T ss_dssp             SSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEE
T ss_pred             hcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEec
Confidence            4899999999999999           9999999999871    11                    11199999999876


Q ss_pred             cCCCCceeEEEeChHHHHHHHHHhhhcCc
Q 043839           60 RRAGGTIKACYVPSIVYTSLVLVADKTGF   88 (415)
Q Consensus        60 ~~~~~~~~~~~mhdli~~l~~~~~~~~~~   88 (415)
                      .+   ....|+|||++|++|+.++.++++
T Consensus       448 ~~---~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          448 RM---PVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             CS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             CC---CceEEEeChHHHHHHHHHHHHHHH
Confidence            43   346799999999999988876543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.73  E-value=3.9e-08  Score=82.87  Aligned_cols=92  Identities=14%  Similarity=0.224  Sum_probs=56.6

Q ss_pred             ccEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccC
Q 043839          152 LRVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHP  223 (415)
Q Consensus       152 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~  223 (415)
                      .++++++++.++.+|..+.  .+|++|++++        ..+.++++|++|++++|.+....+..+..+++|++|++.++
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            5678888888877776553  5666666665        23455566666666644444333333566667777777666


Q ss_pred             C-CCCcc-ccCCCCCCCeEEEecc
Q 043839          224 S-SCTPD-ILGRLPNVQTLRISGD  245 (415)
Q Consensus       224 ~-~~~~~-~l~~l~~L~~L~l~~~  245 (415)
                      . ..++. .+..+++|+.|++++|
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCC
Confidence            6 44444 3666667777777666

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.72  E-value=4.3e-08  Score=82.92  Aligned_cols=90  Identities=16%  Similarity=0.183  Sum_probs=50.7

Q ss_pred             cEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCc-ccCccccceeccccC
Q 043839          153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNY-SSSLKDLIFISAVHP  223 (415)
Q Consensus       153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~  223 (415)
                      ++++++++.++.+|..+.  .+|++|++++        ..++++++|++|++++|.+. .+|.. ++.+++|++|++.++
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCCC
Confidence            567777777777776553  4555555554        23444555555555534333 33333 456666666666666


Q ss_pred             C-CCCccc-cCCCCCCCeEEEecc
Q 043839          224 S-SCTPDI-LGRLPNVQTLRISGD  245 (415)
Q Consensus       224 ~-~~~~~~-l~~l~~L~~L~l~~~  245 (415)
                      . ..++.. +..+++|+.|++++|
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             ccceeCHHHhccccCCCEEEeCCC
Confidence            5 444443 556666666666665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.71  E-value=1.6e-07  Score=90.35  Aligned_cols=163  Identities=9%  Similarity=0.015  Sum_probs=78.1

Q ss_pred             ccCcEEEecCCCCCCCCCCcccCccccceeccccCCCCCcc-ccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEE
Q 043839          189 QKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCTPD-ILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLK  267 (415)
Q Consensus       189 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~  267 (415)
                      .+|+.+.+. +....--...+..+++|+.+.+...-..+.. .+.. .+|+.+.+...   ....-...+..+++|+.+.
T Consensus       203 ~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~---i~~I~~~aF~~c~~L~~l~  277 (401)
T 4fdw_A          203 AGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG---VTNIASRAFYYCPELAEVT  277 (401)
T ss_dssp             CCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT---CCEECTTTTTTCTTCCEEE
T ss_pred             cccCEEEeC-CchheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC---ccEEChhHhhCCCCCCEEE
Confidence            445555554 2222112223445555555555432211111 1222 45555555432   2222233445555666665


Q ss_pred             eecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc---------CCCCCcccEEEe
Q 043839          268 LVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKILHL  334 (415)
Q Consensus       268 l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~~L~l  334 (415)
                      +.. +.+-. -..  ++  .+..+ ++|+.+.+.++ ++......+..|++|+.+.+..         ..++ +|+.+.+
T Consensus       278 l~~-~~~~~-~~~~~I~~~aF~~c-~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l  352 (401)
T 4fdw_A          278 TYG-STFND-DPEAMIHPYCLEGC-PKLARFEIPES-IRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKV  352 (401)
T ss_dssp             EES-SCCCC-CTTCEECTTTTTTC-TTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEE
T ss_pred             eCC-ccccC-CcccEECHHHhhCC-ccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEE
Confidence            544 10000 000  23  45556 66666666632 3333344566667777776654         3445 7888888


Q ss_pred             ccCCCccceE-EcCCCcc-CccEEEEecCc
Q 043839          335 KSMLWLEEWT-MGAGSMP-KLESLILNPCA  362 (415)
Q Consensus       335 ~~~~~l~~l~-~~~~~l~-~L~~L~l~~c~  362 (415)
                      .++ ....++ ..+.+++ +++.|.+-...
T Consensus       353 ~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          353 EGT-TPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             cCC-CCcccccccccCCCCCccEEEeCHHH
Confidence            877 344443 3355564 67788776543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.68  E-value=5.6e-10  Score=106.56  Aligned_cols=63  Identities=14%  Similarity=0.178  Sum_probs=31.1

Q ss_pred             CCCCCeEEEecccCcch----hcHHHhhhccCCCcEEEeecCccc----cccccccc-CCCCCCCCceEEEEEccccCC
Q 043839          234 LPNVQTLRISGDLSYHH----SGVSKSLCELHKLECLKLVNEGKM----WQFSRMIL-SEYKFPPTLTQLSLSNTKLME  303 (415)
Q Consensus       234 l~~L~~L~l~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~i----l~~l~Llp-~~~~lp~~L~~L~l~~~~l~~  303 (415)
                      .++|++|++++|.  ..    ..++..+..+++|++|++++ |.+    ...   ++ .+... ++|+.|++++|.++.
T Consensus       154 ~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~~~g~~~---L~~~L~~~-~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          154 QCQITTLRLSNNP--LTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEGLEL---LAAQLDRN-RQLQELNVAYNGAGD  225 (372)
T ss_dssp             TCCCCEEECCSSC--CHHHHHHHHHHHHHTCSSCCEEECTT-SSCHHHHHHH---HHHHGGGC-SCCCEEECCSSCCCH
T ss_pred             CCccceeeCCCCC--CChHHHHHHHHHHhcCCCcCEEeCCC-CCCCcHHHHH---HHHHHhcC-CCcCeEECCCCCCCH
Confidence            4555666665552  21    22334445555566666655 311    000   22 33445 567777777776644

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.66  E-value=5.5e-09  Score=99.01  Aligned_cols=62  Identities=19%  Similarity=0.224  Sum_probs=37.6

Q ss_pred             CCCcccEEEeccCCCccceE---EcCCCccCccEEEEecCcccC----CChhhhcCCCCCCeEEEecCC
Q 043839          325 SFPLLKILHLKSMLWLEEWT---MGAGSMPKLESLILNPCAYLR----KLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       325 ~~~~L~~L~l~~~~~l~~l~---~~~~~l~~L~~L~l~~c~~~~----~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      .||+|++|.+.+|......+   .....+|+|+.|+++.|....    .++.++.++++|+.|++++|.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            46777777777764332221   112457778888887765443    234445567778888887765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.51  E-value=2.7e-07  Score=77.62  Aligned_cols=99  Identities=13%  Similarity=0.092  Sum_probs=56.3

Q ss_pred             CcEEEecCCCCCCCCCCcccCccccceeccccCC-CCC-ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEe
Q 043839          191 LMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCT-PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKL  268 (415)
Q Consensus       191 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  268 (415)
                      .+.++++ ++....+|..+.  ++|++|++.++. ..+ +..++.+++|++|++++|  ......+..+..+++|+.|++
T Consensus        11 ~~~l~~s-~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           11 GTTVDCS-GKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN--QLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TTEEECT-TSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS--CCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEeC-CCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC--CcCccChhhccCCCCCCEEEC
Confidence            4566777 444455676553  677778877777 444 555777777888887777  233222223345555555555


Q ss_pred             ecCccccccccc--cc--CCCCCCCCceEEEEEccccC
Q 043839          269 VNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLM  302 (415)
Q Consensus       269 ~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~  302 (415)
                      ++ |      ++  +|  .+..+ ++|+.|++++|.+.
T Consensus        86 ~~-N------~l~~~~~~~~~~l-~~L~~L~L~~N~~~  115 (170)
T 3g39_A           86 ND-N------QLKSIPRGAFDNL-KSLTHIWLLNNPWD  115 (170)
T ss_dssp             CS-S------CCCCCCTTTTTTC-TTCCEEECCSSCBC
T ss_pred             CC-C------ccCEeCHHHhcCC-CCCCEEEeCCCCCC
Confidence            55 3      22  33  34455 55555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.50  E-value=1.5e-08  Score=96.57  Aligned_cols=117  Identities=11%  Similarity=0.043  Sum_probs=70.6

Q ss_pred             cccCcEEEecCCCCCCCCCCcc-----cCccccceeccccCC------CCCccccCCCCCCCeEEEecccCcchh----c
Q 043839          188 MQKLMHLNFGSITMPSPPNNYS-----SSLKDLIFISAVHPS------SCTPDILGRLPNVQTLRISGDLSYHHS----G  252 (415)
Q Consensus       188 l~~L~~L~l~~~~~~~~~p~~i-----~~l~~L~~L~l~~~~------~~~~~~l~~l~~L~~L~l~~~~~~~~~----~  252 (415)
                      +++|++|++++|.+.......+     ...++|++|++.+|.      ..++..+..+++|++|++++|.  ..+    .
T Consensus       125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~--l~~~g~~~  202 (372)
T 3un9_A          125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG--LGDEGLEL  202 (372)
T ss_dssp             HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS--CHHHHHHH
T ss_pred             HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC--CCcHHHHH
Confidence            4566777777555433222222     234667888887776      2344555677888888888873  322    3


Q ss_pred             HHHhhhccCCCcEEEeecCccc----cccccccc-CCCCCCCCceEEEEEccccCCCCchhhcC
Q 043839          253 VSKSLCELHKLECLKLVNEGKM----WQFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEK  311 (415)
Q Consensus       253 ~~~~l~~l~~L~~L~l~~~~~i----l~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~  311 (415)
                      ++..+...++|+.|++++ |.+    ...   ++ .+... ++|++|++++|.++......+..
T Consensus       203 L~~~L~~~~~L~~L~Ls~-N~i~~~g~~~---l~~~L~~~-~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          203 LAAQLDRNRQLQELNVAY-NGAGDTAALA---LARAAREH-PSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HHHHGGGCSCCCEEECCS-SCCCHHHHHH---HHHHHHHC-SSCCEEECTTSSCCHHHHHHHHH
T ss_pred             HHHHHhcCCCcCeEECCC-CCCCHHHHHH---HHHHHHhC-CCCCEEeccCCCCCHHHHHHHHH
Confidence            456667777888888887 421    000   22 33456 78899999988876554444443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.49  E-value=8.1e-08  Score=105.71  Aligned_cols=69  Identities=20%  Similarity=0.241  Sum_probs=60.8

Q ss_pred             hcccCCCccchHHHHhhcccCCCCceechhhHHH---------------hhcCCCeeeeecCCCCceeEEEeChHHHHHH
Q 043839           15 IYSVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQ---------------LINPSRLHSSKRRAGGTIKACYVPSIVYTSL   79 (415)
Q Consensus        15 ~lSY~~L~~~lk~cfl~~~~fp~~~~i~~~~Li~---------------L~~~~li~~~~~~~~~~~~~~~mhdli~~l~   79 (415)
                      .+||+.||+++|+||+|||+||+++.|+++.++.               |++++|++...   .++...|+|||++|+++
T Consensus       369 ~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~  445 (1249)
T 3sfz_A          369 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFL  445 (1249)
T ss_dssp             HHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHH
Confidence            4799999999999999999999999999988887               99999999754   34456799999999999


Q ss_pred             HHHhhhc
Q 043839           80 VLVADKT   86 (415)
Q Consensus        80 ~~~~~~~   86 (415)
                      +..+.++
T Consensus       446 ~~~~~~~  452 (1249)
T 3sfz_A          446 TEKNRSQ  452 (1249)
T ss_dssp             HHHTGGG
T ss_pred             HhhhhHH
Confidence            9887654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.48  E-value=3.5e-07  Score=77.26  Aligned_cols=51  Identities=14%  Similarity=0.063  Sum_probs=31.8

Q ss_pred             cEEEecCCCCCCCCCCcccCccccceeccccCC-CCC-ccccCCCCCCCeEEEecc
Q 043839          192 MHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCT-PDILGRLPNVQTLRISGD  245 (415)
Q Consensus       192 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~  245 (415)
                      +.++++ ++....+|..+.  ++|++|++.++. ..+ |..++.+++|+.|++++|
T Consensus        15 ~~l~~~-~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   67 (174)
T 2r9u_A           15 TLVNCQ-NIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN   67 (174)
T ss_dssp             SEEECC-SSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeC-CCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC
Confidence            455666 444456666554  667777777776 333 455667777777777776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.46  E-value=1.2e-07  Score=89.82  Aligned_cols=156  Identities=15%  Similarity=0.125  Sum_probs=84.5

Q ss_pred             ccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhh--ccCCCcEEEeec-Cc----cc-ccccc
Q 043839          209 SSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLC--ELHKLECLKLVN-EG----KM-WQFSR  279 (415)
Q Consensus       209 i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~--~l~~L~~L~l~~-~~----~i-l~~l~  279 (415)
                      +..+++|+.|.+.++. ..++. + .+++|++|++..+  .........+.  .+++|++|+++. .+    +. ++.  
T Consensus       168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~--~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~--  241 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISG--GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV--  241 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECS--BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG--
T ss_pred             HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecC--CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH--
Confidence            3445556666665543 22222 2 2677777777766  23333333443  567777777642 01    00 000  


Q ss_pred             cc-cCC--CCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccc-----eEEcCCCcc
Q 043839          280 MI-LSE--YKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEE-----WTMGAGSMP  351 (415)
Q Consensus       280 Ll-p~~--~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~  351 (415)
                       + +.+  ..+ |+|++|.+.+|.+.......+..           ...+|+|++|+|+.| .++.     ++..+..++
T Consensus       242 -l~~~l~~~~~-p~Lr~L~L~~~~i~~~~~~~la~-----------a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~  307 (362)
T 2ra8_A          242 -FRPLFSKDRF-PNLKWLGIVDAEEQNVVVEMFLE-----------SDILPQLETMDISAG-VLTDEGARLLLDHVDKIK  307 (362)
T ss_dssp             -TGGGSCTTTC-TTCCEEEEESCTTHHHHHHHHHH-----------CSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHT
T ss_pred             -HHHHHhcCCC-CCcCEEeCCCCCCchHHHHHHHh-----------CccCCCCCEEECCCC-CCChHHHHHHHhhcccCC
Confidence             1 111  246 88888888888765433333332           124567788888776 4543     344446789


Q ss_pred             CccEEEEecCcccCCChhhhcC-CCCCCeEEEecCC
Q 043839          352 KLESLILNPCAYLRKLPEELWC-IKNLCKLELHWPQ  386 (415)
Q Consensus       352 ~L~~L~l~~c~~~~~lp~~l~~-l~~L~~L~l~~c~  386 (415)
                      +|+.|++++|......-..+.. +  ...+++++..
T Consensus       308 ~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          308 HLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             TCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             cceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            9999999999754322222322 2  3557776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.41  E-value=3.1e-06  Score=81.17  Aligned_cols=94  Identities=21%  Similarity=0.134  Sum_probs=62.3

Q ss_pred             CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc---------CCCCCcccEEEeccCCCccceE-EcCCCccC
Q 043839          283 SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKILHLKSMLWLEEWT-MGAGSMPK  352 (415)
Q Consensus       283 ~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~  352 (415)
                      .+..+ ..++.+......+.   ...+..+.+|+.+.+..         ..++.+|+.+.|..  .++.+. ..+.+|++
T Consensus       271 ~F~~~-~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~  344 (394)
T 4fs7_A          271 LFYNC-SGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTS  344 (394)
T ss_dssp             TTTTC-TTCCEEEECSSEEC---TTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTT
T ss_pred             ccccc-cccceeccCceeec---cccccccccccccccccccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCC
Confidence            34445 55666555443321   23456778888888765         44567888888864  466665 34778899


Q ss_pred             ccEEEEecCcccCCCh-hhhcCCCCCCeEEEec
Q 043839          353 LESLILNPCAYLRKLP-EELWCIKNLCKLELHW  384 (415)
Q Consensus       353 L~~L~l~~c~~~~~lp-~~l~~l~~L~~L~l~~  384 (415)
                      |+.+.+..+  +..++ ..+.+|++|+.+++..
T Consensus       345 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          345 LSNINFPLS--LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred             CCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence            999988655  33443 5688899999999975

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.30  E-value=1.2e-06  Score=82.46  Aligned_cols=86  Identities=13%  Similarity=-0.013  Sum_probs=47.1

Q ss_pred             hccCCcccEEEcCC-cccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC
Q 043839          146 CKKFKHLRVLNLGS-AVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS  224 (415)
Q Consensus       146 ~~~~~~L~~L~l~~-~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~  224 (415)
                      +..+++|++|+|++ |.++.+|.               ..++++++|++|+|++|.+....|..++.+++|++|+++++.
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~---------------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLEL---------------RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECG---------------GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             CCCCCCeeEEEccCCCCCCCcCh---------------hHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            45555555555553 44553331               234455555566666455554455556677777777777766


Q ss_pred             -CCCccccCCCCCCCeEEEeccc
Q 043839          225 -SCTPDILGRLPNVQTLRISGDL  246 (415)
Q Consensus       225 -~~~~~~l~~l~~L~~L~l~~~~  246 (415)
                       ..+|..+....+|+.|++.+|.
T Consensus        92 l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           92 LESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSSC
T ss_pred             cceeCHHHcccCCceEEEeeCCC
Confidence             5555443222237777776663

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.23  E-value=1e-06  Score=73.90  Aligned_cols=85  Identities=13%  Similarity=0.116  Sum_probs=56.4

Q ss_pred             CCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceE-EcCCC----ccCccEEEEecCcc
Q 043839          289 PTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWT-MGAGS----MPKLESLILNPCAY  363 (415)
Q Consensus       289 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~----l~~L~~L~l~~c~~  363 (415)
                      ..|++|++++|.++......+..++              +|++|+|++|..++... ..+..    +++|+.|++++|+.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~--------------~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~  126 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQ--------------YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN  126 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCS--------------CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCC--------------CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence            4799999999998766665555554              55555567776666322 12233    35788888888875


Q ss_pred             cCC-ChhhhcCCCCCCeEEEecCCh
Q 043839          364 LRK-LPEELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       364 ~~~-lp~~l~~l~~L~~L~l~~c~~  387 (415)
                      +++ --..+.++++|++|++++||.
T Consensus       127 ITD~Gl~~L~~~~~L~~L~L~~c~~  151 (176)
T 3e4g_A          127 VTDKGIIALHHFRNLKYLFLSDLPG  151 (176)
T ss_dssp             CCHHHHHHGGGCTTCCEEEEESCTT
T ss_pred             CCHHHHHHHhcCCCCCEEECCCCCC
Confidence            542 113466788888888888873

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.21  E-value=7.3e-06  Score=78.59  Aligned_cols=92  Identities=12%  Similarity=0.036  Sum_probs=66.8

Q ss_pred             CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc---------CCCCCcccEEEeccCCCccceE-EcCCCccC
Q 043839          283 SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKILHLKSMLWLEEWT-MGAGSMPK  352 (415)
Q Consensus       283 ~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~  352 (415)
                      .+..+ .+|+.+.+..+ ++......+..|.+|+.+++..         ..++.+|+.+.+..+  ++.+. ..+.+|++
T Consensus       292 ~F~~~-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          292 TFYGC-SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCIN  367 (394)
T ss_dssp             TTTTC-TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTT
T ss_pred             ccccc-ccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCC
Confidence            55667 88999988765 3333445678889999998865         455678999888653  66665 35789999


Q ss_pred             ccEEEEecCcccCCChhhhcCCCCCCeE
Q 043839          353 LESLILNPCAYLRKLPEELWCIKNLCKL  380 (415)
Q Consensus       353 L~~L~l~~c~~~~~lp~~l~~l~~L~~L  380 (415)
                      |+.+.+..+-  ..+...+.++++|+.+
T Consensus       368 L~~i~lp~~~--~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          368 LKKVELPKRL--EQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CCEEEEEGGG--GGGGGGBCTTCEEEEE
T ss_pred             CCEEEECCCC--EEhhheecCCCCCcEE
Confidence            9999997653  2345668888888775

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.14  E-value=4.2e-06  Score=78.71  Aligned_cols=39  Identities=21%  Similarity=0.268  Sum_probs=19.4

Q ss_pred             CcccCccccceeccccCC-CC-CccccCCCCCCCeEEEecc
Q 043839          207 NYSSSLKDLIFISAVHPS-SC-TPDILGRLPNVQTLRISGD  245 (415)
Q Consensus       207 ~~i~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~  245 (415)
                      ..++.+++|++|+++++. .. .+..++.+++|+.|++++|
T Consensus        50 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           50 RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             hHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            345555555555555555 22 2233455555555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.12  E-value=0.00012  Score=70.13  Aligned_cols=251  Identities=10%  Similarity=0.050  Sum_probs=138.1

Q ss_pred             ceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcc---cccCc-ccccCccCCceEecCc-------ccccccccC
Q 043839          123 YLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAV---LDLYP-PGLENLFHLKYLKLIT-------PLLKLMQKL  191 (415)
Q Consensus       123 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~lp-~~i~~l~~L~~L~l~~-------~~i~~l~~L  191 (415)
                      .|+++.+-.. .    ..+-...|.+|++|+.+.+..+.   ++.+. .++..+.+|+.+.+..       ..+..+.+|
T Consensus        65 ~L~sI~iP~s-v----t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~~L  139 (394)
T 4gt6_A           65 VLTSVQIPDT-V----TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCEEL  139 (394)
T ss_dssp             CCCEEEECTT-C----CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTTCTTC
T ss_pred             cCEEEEECCC-e----eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhhhhhhhccc
Confidence            3666666543 2    33445567778888888776543   33333 2344566666665544       445566777


Q ss_pred             cEEEecCCCCCCCCCCcccCccccceeccccCCCCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecC
Q 043839          192 MHLNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNE  271 (415)
Q Consensus       192 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  271 (415)
                      +.+.+. .....--...+..+.+|+.+.+...-..+....-...+|+.+.+...   ....-...+..+.++........
T Consensus       140 ~~i~lp-~~~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~---~~~i~~~af~~c~~l~~~~~~~~  215 (394)
T 4gt6_A          140 DTVTIP-EGVTSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAK---VTRIGTNAFSECFALSTITSDSE  215 (394)
T ss_dssp             CEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTT---CCEECTTTTTTCTTCCEEEECCS
T ss_pred             cccccc-ceeeeecccceecccccccccccceeeEeccccccccceeEEEECCc---ccccccchhhhccccceeccccc
Confidence            777775 32222222234556666666654432111111112244555555443   11111222333444444332220


Q ss_pred             ------ccc-------------------cccc----cc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeE
Q 043839          272 ------GKM-------------------WQFS----RM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVL  318 (415)
Q Consensus       272 ------~~i-------------------l~~l----~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  318 (415)
                            +.+                   +..+    .+  +.  .+..+ ..|+.+.+..... ......+.++++|+.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c-~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i  293 (394)
T 4gt6_A          216 SYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSC-AYLASVKMPDSVV-SIGTGAFMNCPALQDI  293 (394)
T ss_dssp             SSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTC-SSCCEEECCTTCC-EECTTTTTTCTTCCEE
T ss_pred             ccccccceeecccccccccccccccccccceEEcCCcceEcccceeeec-ccccEEecccccc-eecCcccccccccccc
Confidence                  000                   0000    00  22  34566 7788887765431 2234466778888888


Q ss_pred             eecc---------CCCCCcccEEEeccCCCccceE-EcCCCccCccEEEEecCcccCCCh-hhhcCCCCCCeEEEecCCh
Q 043839          319 KLKQ---------NSSFPLLKILHLKSMLWLEEWT-MGAGSMPKLESLILNPCAYLRKLP-EELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       319 ~l~~---------~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~~~~lp-~~l~~l~~L~~L~l~~c~~  387 (415)
                      .+..         ..++.+|+.+.|..  .++.+. ..+.+|.+|+.+.|-.+  +..++ ..+.+|++|+.+++.+...
T Consensus       294 ~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          294 EFSSRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             cCCCcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCcee
Confidence            8865         45567899888865  466665 35788999999999654  33454 5788999999999988654


Q ss_pred             h
Q 043839          388 H  388 (415)
Q Consensus       388 ~  388 (415)
                      .
T Consensus       370 ~  370 (394)
T 4gt6_A          370 Q  370 (394)
T ss_dssp             H
T ss_pred             e
Confidence            3

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=98.09  E-value=1.1e-06  Score=92.15  Aligned_cols=60  Identities=23%  Similarity=0.119  Sum_probs=50.5

Q ss_pred             hcccCCCccch-HHHHhhcccCCCCceechhhHHH----------------hhcCCCeeeeecCCCCceeEEEeChHHHH
Q 043839           15 IYSVMGLPFHL-KVCYIYLCVYRPSIEISTRQLYQ----------------LINPSRLHSSKRRAGGTIKACYVPSIVYT   77 (415)
Q Consensus        15 ~lSY~~L~~~l-k~cfl~~~~fp~~~~i~~~~Li~----------------L~~~~li~~~~~~~~~~~~~~~mhdli~~   77 (415)
                      ++||+.||+++ |+||+|||+||+++.|+++.++.                |+++||++..     +....|+|||++++
T Consensus       360 elSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllE  434 (1221)
T 1vt4_I          360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLE  434 (1221)
T ss_dssp             HHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHH
Confidence            47999999999 99999999999999998776543                9999999873     11246999999998


Q ss_pred             HH
Q 043839           78 SL   79 (415)
Q Consensus        78 l~   79 (415)
                      ++
T Consensus       435 Lr  436 (1221)
T 1vt4_I          435 LK  436 (1221)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.05  E-value=3.5e-06  Score=85.30  Aligned_cols=66  Identities=21%  Similarity=0.244  Sum_probs=56.2

Q ss_pred             hcccCCCccchHHHHhhcccCCCCceechhhHHH---------------hhcCCCeeeeecCCCCceeEEEeChHHHHHH
Q 043839           15 IYSVMGLPFHLKVCYIYLCVYRPSIEISTRQLYQ---------------LINPSRLHSSKRRAGGTIKACYVPSIVYTSL   79 (415)
Q Consensus        15 ~lSY~~L~~~lk~cfl~~~~fp~~~~i~~~~Li~---------------L~~~~li~~~~~~~~~~~~~~~mhdli~~l~   79 (415)
                      ..||+.||++.|.||++||+||+|+.|+.+.++.               |+++++++...   ++....|+|||++++++
T Consensus       369 ~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~  445 (591)
T 1z6t_A          369 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFL  445 (591)
T ss_dssp             HHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHH
Confidence            4799999999999999999999999998876654               89999998654   23446799999999999


Q ss_pred             HHHh
Q 043839           80 VLVA   83 (415)
Q Consensus        80 ~~~~   83 (415)
                      ....
T Consensus       446 ~~~~  449 (591)
T 1z6t_A          446 TEKN  449 (591)
T ss_dssp             HHHT
T ss_pred             Hhhh
Confidence            8773

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.93  E-value=0.0002  Score=68.53  Aligned_cols=263  Identities=9%  Similarity=0.009  Sum_probs=142.7

Q ss_pred             ceeEEEEEeCCCCCccCCC-C--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCc-ccccCccCCc
Q 043839          101 NVKRCFILKDLTEFFPLEH-S--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYP-PGLENLFHLK  176 (415)
Q Consensus       101 ~~r~l~l~~~~~~~~~~~~-~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~  176 (415)
                      .++.+.+. +.-.. +... .  +.+|+++.+..+..... ..+-...|..+..|+.+.+..+ ++.++ ..+..+.+|+
T Consensus        65 ~L~sI~iP-~svt~-Ig~~AF~~C~~L~~i~~~~n~p~~l-~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~  140 (394)
T 4gt6_A           65 VLTSVQIP-DTVTE-IGSNAFYNCTSLKRVTIQDNKPSCV-KKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELD  140 (394)
T ss_dssp             CCCEEEEC-TTCCE-ECTTTTTTCTTCCEEEEGGGCCCCC-CEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCC
T ss_pred             cCEEEEEC-CCeeE-EhHHHhhCCccCceEeecCCCCCee-eEechhhchhcccceeeccCCc-cceehhhhhhhhcccc
Confidence            46777776 54333 3332 2  78899998865432110 2333455777777776666543 33222 2345667777


Q ss_pred             eEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEeccc--
Q 043839          177 YLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDL--  246 (415)
Q Consensus       177 ~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~--  246 (415)
                      .+.+..       ..+..+.+|+.+.+. ... ..+....-...+|+.+.+.... .-....+..+.++.........  
T Consensus       141 ~i~lp~~~~~I~~~~F~~c~~L~~i~~~-~~~-~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~  218 (394)
T 4gt6_A          141 TVTIPEGVTSVADGMFSYCYSLHTVTLP-DSV-TAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYP  218 (394)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECC-TTC-CEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSC
T ss_pred             cccccceeeeecccceeccccccccccc-cee-eEeccccccccceeEEEECCcccccccchhhhccccceecccccccc
Confidence            777755       445566777777665 221 1121111122345554443322 1111122333333333222110  


Q ss_pred             --------------------------------CcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCC
Q 043839          247 --------------------------------SYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPT  290 (415)
Q Consensus       247 --------------------------------~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~  290 (415)
                                                      ......-...+..+.+|+.+.+..        .+  ++  .+..+ ++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~--------~~~~I~~~aF~~c-~~  289 (394)
T 4gt6_A          219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPD--------SVVSIGTGAFMNC-PA  289 (394)
T ss_dssp             BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCT--------TCCEECTTTTTTC-TT
T ss_pred             cccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccc--------ccceecCcccccc-cc
Confidence                                            001111123455667777777654        11  33  55677 88


Q ss_pred             ceEEEEEccccCCCCchhhcCCCCCCeEeecc---------CCCCCcccEEEeccCCCccceE-EcCCCccCccEEEEec
Q 043839          291 LTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKILHLKSMLWLEEWT-MGAGSMPKLESLILNP  360 (415)
Q Consensus       291 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~  360 (415)
                      |+.+.+... ++......+..|.+|+.+.+..         ..++.+|+.+.|-.  .++.+. ..+.+|++|+.+++.+
T Consensus       290 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          290 LQDIEFSSR-ITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred             cccccCCCc-ccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence            999888643 3333445788899999999865         45677899999864  466665 4578999999999988


Q ss_pred             CcccCCChhhhcCCCCCCeEEEec
Q 043839          361 CAYLRKLPEELWCIKNLCKLELHW  384 (415)
Q Consensus       361 c~~~~~lp~~l~~l~~L~~L~l~~  384 (415)
                      +...   ...+..+.+|+.+.+..
T Consensus       367 ~~~~---~~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          367 SRSQ---WNAISTDSGLQNLPVAP  387 (394)
T ss_dssp             CHHH---HHTCBCCCCC-------
T ss_pred             ceee---hhhhhccCCCCEEEeCC
Confidence            7532   24566788898888764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.87  E-value=2.3e-06  Score=72.89  Aligned_cols=42  Identities=12%  Similarity=0.119  Sum_probs=25.0

Q ss_pred             chHHHhccCCcccEEEcCCc-ccc-----cCcccccCccCCceEecCc
Q 043839          141 DCENFCKKFKHLRVLNLGSA-VLD-----LYPPGLENLFHLKYLKLIT  182 (415)
Q Consensus       141 ~~~~~~~~~~~L~~L~l~~~-~~~-----~lp~~i~~l~~L~~L~l~~  182 (415)
                      .+...+...+.|++|+|++| .+.     .+...+...++|++|+|++
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~   74 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG   74 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC
Confidence            34556777888888888887 665     2333334444555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.83  E-value=0.00054  Score=64.99  Aligned_cols=96  Identities=16%  Similarity=0.139  Sum_probs=61.8

Q ss_pred             CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc---------CCCCCcccEEEeccCCCccceE-EcCCCccC
Q 043839          283 SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKILHLKSMLWLEEWT-MGAGSMPK  352 (415)
Q Consensus       283 ~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~  352 (415)
                      .+..+ ..|+.+.+..+ ++......+..+.+|+.+.+..         ..++++|+.+.+.++ .++.++ ..+.+|++
T Consensus       235 ~f~~~-~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          235 AFYGM-KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTTC-SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTT
T ss_pred             cccCC-ccceEEEcCCC-ccEeCccccceeehhccccccccceecccccccccccccccccccc-ccceehhhhhcCCCC
Confidence            44556 77777777654 2223344566777777777754         445677888887654 466665 34677888


Q ss_pred             ccEEEEecCcccCCCh-hhhcCCCCCCeEEEe
Q 043839          353 LESLILNPCAYLRKLP-EELWCIKNLCKLELH  383 (415)
Q Consensus       353 L~~L~l~~c~~~~~lp-~~l~~l~~L~~L~l~  383 (415)
                      |+.+.+...  +..++ ..+.+|++|+.+.+.
T Consensus       312 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          312 LSSVTLPTA--LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred             CCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence            888888543  33343 457778888888774

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.77  E-value=1.1e-05  Score=67.49  Aligned_cols=59  Identities=14%  Similarity=0.123  Sum_probs=35.0

Q ss_pred             cccEEEeccCCCcc-ceEEcCCCccCccEEEEecCcccCCC-hhhhcCC----CCCCeEEEecCCh
Q 043839          328 LLKILHLKSMLWLE-EWTMGAGSMPKLESLILNPCAYLRKL-PEELWCI----KNLCKLELHWPQP  387 (415)
Q Consensus       328 ~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~~~~l-p~~l~~l----~~L~~L~l~~c~~  387 (415)
                      +|+.|++++|. ++ .-...+..+++|+.|++++|..+++- -..+..+    ++|++|+|++|+.
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~  126 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN  126 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence            46777777775 33 22233567777777787777755421 1223332    3577777777774

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.54  E-value=2.6e-05  Score=66.27  Aligned_cols=114  Identities=13%  Similarity=0.032  Sum_probs=71.7

Q ss_pred             CCceeEEEeecC-CCccccccchHHHhccCCcccEEEcCCcccc-cCcccccCccCCceEecCcccccccccCcEEEecC
Q 043839          121 DMYLQSFLNHSS-ESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGS  198 (415)
Q Consensus       121 ~~~Lr~L~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~  198 (415)
                      .+.+++|.+.++ .........+...+...++|++|+|++|.+. .-...++            ..+...++|++|++++
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~------------~~L~~n~~L~~L~L~~  102 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA------------EMLKVNNTLKSLNVES  102 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH------------HHHHHCSSCCEEECCS
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH------------HHHHhCCCcCEEECcC
Confidence            678999999887 6643122334566788899999999999986 2222222            2223344555555654


Q ss_pred             CCCCCC----CCCcccCccccceecc--ccCC------CCCccccCCCCCCCeEEEeccc
Q 043839          199 ITMPSP----PNNYSSSLKDLIFISA--VHPS------SCTPDILGRLPNVQTLRISGDL  246 (415)
Q Consensus       199 ~~~~~~----~p~~i~~l~~L~~L~l--~~~~------~~~~~~l~~l~~L~~L~l~~~~  246 (415)
                      |.+...    +...+...++|++|++  .++.      ..+...+...++|++|++++|.
T Consensus       103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          103 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            544332    3344555667777777  5555      2244556677889999998883

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.30  E-value=0.00015  Score=65.08  Aligned_cols=74  Identities=19%  Similarity=0.161  Sum_probs=45.8

Q ss_pred             hccCCcccEEEcCCcccccCc---ccccCccCCceEecCc------ccccccc--cCcEEEecCCCCCCCCCC-------
Q 043839          146 CKKFKHLRVLNLGSAVLDLYP---PGLENLFHLKYLKLIT------PLLKLMQ--KLMHLNFGSITMPSPPNN-------  207 (415)
Q Consensus       146 ~~~~~~L~~L~l~~~~~~~lp---~~i~~l~~L~~L~l~~------~~i~~l~--~L~~L~l~~~~~~~~~p~-------  207 (415)
                      ..++++|++|+|++|.++.++   ..+..+++|++|+|++      ..+..+.  +|++|++++|.+...+|.       
T Consensus       166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            367899999999999988544   4555677777777776      2333333  566666665554444432       


Q ss_pred             cccCccccceec
Q 043839          208 YSSSLKDLIFIS  219 (415)
Q Consensus       208 ~i~~l~~L~~L~  219 (415)
                      .+..+++|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            134455555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.15  E-value=0.00013  Score=65.50  Aligned_cols=80  Identities=30%  Similarity=0.305  Sum_probs=44.3

Q ss_pred             CCceEEEEEccccCC--CCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCcc--CccEEEEecCccc
Q 043839          289 PTLTQLSLSNTKLME--DPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMP--KLESLILNPCAYL  364 (415)
Q Consensus       289 ~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~--~L~~L~l~~c~~~  364 (415)
                      ++|+.|+|++|.+++  .++..++.+++              |+.|+|++| .++.+ ..+..+.  +|+.|++++|+..
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~--------------L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPN--------------LKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTT--------------CCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCC--------------CCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCc
Confidence            666666666666644  22233334444              444444555 34433 2233333  7888888888876


Q ss_pred             CCCh-------hhhcCCCCCCeEEEec
Q 043839          365 RKLP-------EELWCIKNLCKLELHW  384 (415)
Q Consensus       365 ~~lp-------~~l~~l~~L~~L~l~~  384 (415)
                      +.+|       ..+..+|+|+.||-..
T Consensus       234 ~~~~~~~~y~~~il~~~P~L~~LDg~~  260 (267)
T 3rw6_A          234 DTFRDQSTYISAIRERFPKLLRLDGHE  260 (267)
T ss_dssp             GGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred             cccCcchhHHHHHHHHCcccCeECCcC
Confidence            6554       2356678887776443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.66  E-value=0.053  Score=50.99  Aligned_cols=55  Identities=15%  Similarity=0.041  Sum_probs=27.3

Q ss_pred             CCCceeEEEEEeCCCCCccCCCC--CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCc
Q 043839           98 SLANVKRCFILKDLTEFFPLEHS--DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSA  160 (415)
Q Consensus        98 ~~~~~r~l~l~~~~~~~~~~~~~--~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  160 (415)
                      ....++.+.+. +.-.. +....  -..+.++.+...-     ..+....|..+ +|+.+.+.++
T Consensus        67 ~C~~L~~I~lp-~~v~~-Ig~~aF~~c~l~~i~~~~~l-----~~I~~~aF~~~-~L~~i~lp~~  123 (379)
T 4h09_A           67 SCYNMTKVTVA-STVTS-IGDGAFADTKLQSYTGMERV-----KKFGDYVFQGT-DLDDFEFPGA  123 (379)
T ss_dssp             TCTTCCEEEEC-TTCCE-ECTTTTTTCCCCEEEECTTC-----CEECTTTTTTC-CCSEEECCTT
T ss_pred             CCCCCCEEEeC-CcceE-echhhhcCCCCceEECCcee-----eEeccceeccC-CcccccCCCc
Confidence            34566777776 44222 33322  2256666554332     22233345443 6788877654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.52  E-value=0.024  Score=48.11  Aligned_cols=113  Identities=7%  Similarity=-0.011  Sum_probs=52.9

Q ss_pred             hHHHhccCCcccEEEcCCc-ccc-----cCcccccCccCCceEecCcccccccccCcEEEecCCCCCCC----CCCcccC
Q 043839          142 CENFCKKFKHLRVLNLGSA-VLD-----LYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSP----PNNYSSS  211 (415)
Q Consensus       142 ~~~~~~~~~~L~~L~l~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~----~p~~i~~  211 (415)
                      +...+.+-+.|+.|+|+++ .+.     .+-..+..-+.|+.|+|++                |.+...    +-..+..
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~----------------n~igd~ga~alA~aL~~   96 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN----------------TAISDSEARGLIELIET   96 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT----------------SCCBHHHHTTHHHHHHH
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC----------------CCCChHHHHHHHHHHhc
Confidence            3445666677888888775 554     1222233333344444433                333211    1111222


Q ss_pred             ccccceeccccCC------CCCccccCCCCCCCeEEEecccC-cch----hcHHHhhhccCCCcEEEeec
Q 043839          212 LKDLIFISAVHPS------SCTPDILGRLPNVQTLRISGDLS-YHH----SGVSKSLCELHKLECLKLVN  270 (415)
Q Consensus       212 l~~L~~L~l~~~~------~~~~~~l~~l~~L~~L~l~~~~~-~~~----~~~~~~l~~l~~L~~L~l~~  270 (415)
                      -+.|++|++.++.      ..+...+..-+.|+.|+++++.. ...    ..+...+..-+.|+.|++++
T Consensus        97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A           97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence            3344444444444      23344455555577777764321 111    23445555556666666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.51  E-value=0.063  Score=45.48  Aligned_cols=15  Identities=0%  Similarity=0.149  Sum_probs=7.0

Q ss_pred             cCCCCCCCeEEEecc
Q 043839          231 LGRLPNVQTLRISGD  245 (415)
Q Consensus       231 l~~l~~L~~L~l~~~  245 (415)
                      +..-+.|+.|++++|
T Consensus        66 L~~N~~L~~L~L~~n   80 (197)
T 1pgv_A           66 ACNSKHIEKFSLANT   80 (197)
T ss_dssp             HTTCSCCCEEECTTS
T ss_pred             HhhCCCcCEEEccCC
Confidence            333444555555444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=88.99  E-value=0.62  Score=36.37  Aligned_cols=14  Identities=21%  Similarity=0.392  Sum_probs=6.6

Q ss_pred             EEEcCCcccc--cCcc
Q 043839          154 VLNLGSAVLD--LYPP  167 (415)
Q Consensus       154 ~L~l~~~~~~--~lp~  167 (415)
                      +++.++..++  .+|.
T Consensus        12 ~v~Cs~~~L~~~~vP~   27 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT   27 (130)
T ss_dssp             EEECCSSCCCTTTSCS
T ss_pred             EEEeCCCCCccccCCC
Confidence            4444444444  4443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=86.70  E-value=0.4  Score=37.52  Aligned_cols=35  Identities=34%  Similarity=0.487  Sum_probs=23.0

Q ss_pred             CCCCceEEEEEccccCCCCchhhcCCCCCCeEeec
Q 043839          287 FPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLK  321 (415)
Q Consensus       287 lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  321 (415)
                      +|++|++|+|++|.++......+..+++|+.|+|.
T Consensus        29 lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   63 (130)
T 3rfe_A           29 FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLG   63 (130)
T ss_dssp             CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC
T ss_pred             CCcCCCEEECCCCcCCccChhhhhhccccCEEEec
Confidence            44678888888888765555556666666555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	415
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.82
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.79
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.76
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.73
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.67
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.66
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.63
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.61
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.53
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.49
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.45
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.45
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.42
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.37
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.34
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.33
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.32
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.2
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.17
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.07
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.05
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.01
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.0
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.96
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.96
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.94
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.92
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.84
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.79
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.27
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.93
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.87
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.78
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.38
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.32
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.01

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=2.9e-21  Score=178.87  Aligned_cols=240  Identities=15%  Similarity=0.132  Sum_probs=170.0

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCC-cccc-cCcccccCccCCceEecCc--------cccccccc
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGS-AVLD-LYPPGLENLFHLKYLKLIT--------PLLKLMQK  190 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~lp~~i~~l~~L~~L~l~~--------~~i~~l~~  190 (415)
                      ..+++.|.+.++....  ..-++..+.++++|++|++++ |.+. .+|..|+++++|++|++++        ..+..+.+
T Consensus        49 ~~~v~~L~L~~~~l~g--~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             cEEEEEEECCCCCCCC--CCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhh
Confidence            4478899998876632  223467789999999999987 5676 8999999999999998887        44666777


Q ss_pred             CcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCccccCCCCCC-CeEEEecccCcchhcHHHhhhccCCCcEEE
Q 043839          191 LMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTPDILGRLPNV-QTLRISGDLSYHHSGVSKSLCELHKLECLK  267 (415)
Q Consensus       191 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~  267 (415)
                      |+++++++|.....+|..++++++|+++++.++.  +.+|..+..+.++ +.+.+..+  ...+..+..+..+..+ .++
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n--~l~~~~~~~~~~l~~~-~l~  203 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN--RLTGKIPPTFANLNLA-FVD  203 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS--EEEEECCGGGGGCCCS-EEE
T ss_pred             hcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccc--cccccccccccccccc-ccc
Confidence            8888888777777778888888888888887777  5677777777665 66777666  3555555555555433 455


Q ss_pred             eecCccccccccccc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEc
Q 043839          268 LVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMG  346 (415)
Q Consensus       268 l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~  346 (415)
                      +.. +....   .+| .+..+ ++++.++++++.+.+.+ +.++.              +++|+.|++++|...+.+|..
T Consensus       204 l~~-~~~~~---~~~~~~~~~-~~l~~l~~~~~~l~~~~-~~~~~--------------~~~L~~L~Ls~N~l~g~iP~~  263 (313)
T d1ogqa_         204 LSR-NMLEG---DASVLFGSD-KNTQKIHLAKNSLAFDL-GKVGL--------------SKNLNGLDLRNNRIYGTLPQG  263 (313)
T ss_dssp             CCS-SEEEE---CCGGGCCTT-SCCSEEECCSSEECCBG-GGCCC--------------CTTCCEEECCSSCCEECCCGG
T ss_pred             ccc-ccccc---ccccccccc-ccccccccccccccccc-ccccc--------------ccccccccCccCeecccCChH
Confidence            544 10000   045 55666 77777777777664432 33333              456666777888544488888


Q ss_pred             CCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          347 AGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       347 ~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      ++.+++|++|++++|...+.+|. +.++++|+.+++.+++
T Consensus       264 l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         264 LTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             HhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            99999999999999988888884 5678888888888764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=4.3e-19  Score=168.27  Aligned_cols=257  Identities=19%  Similarity=0.133  Sum_probs=161.2

Q ss_pred             CCceeEEEEEeCCCCCccCCCC-CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCce
Q 043839           99 LANVKRCFILKDLTEFFPLEHS-DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKY  177 (415)
Q Consensus        99 ~~~~r~l~l~~~~~~~~~~~~~-~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~  177 (415)
                      ...++.+.+. +..+..+.+-. +++|++|.+.++...    .+.  .+.++++|++|++++|.+..++. ++++++|+.
T Consensus        43 l~~l~~L~l~-~~~I~~l~gl~~L~nL~~L~Ls~N~l~----~l~--~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~  114 (384)
T d2omza2          43 LDQVTTLQAD-RLGIKSIDGVEYLNNLTQINFSNNQLT----DIT--PLKNLTKLVDILMNNNQIADITP-LANLTNLTG  114 (384)
T ss_dssp             HTTCCEEECC-SSCCCCCTTGGGCTTCCEEECCSSCCC----CCG--GGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             hCCCCEEECC-CCCCCCccccccCCCCCEEeCcCCcCC----CCc--cccCCcccccccccccccccccc-ccccccccc
Confidence            3468888888 77776564433 899999999999873    332  38899999999999999987764 888999999


Q ss_pred             EecCc-----------------------------------------------------------------------cccc
Q 043839          178 LKLIT-----------------------------------------------------------------------PLLK  186 (415)
Q Consensus       178 L~l~~-----------------------------------------------------------------------~~i~  186 (415)
                      |++++                                                                       ....
T Consensus       115 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (384)
T d2omza2         115 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA  194 (384)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence            98876                                                                       2234


Q ss_pred             ccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcE
Q 043839          187 LMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLEC  265 (415)
Q Consensus       187 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~  265 (415)
                      .+++++.++++++... .++. .+..++|++|++.++. ..+ +.+..+++|+.|+++++.  .. .++ .+..+++|+.
T Consensus       195 ~l~~~~~l~l~~n~i~-~~~~-~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~--l~-~~~-~~~~~~~L~~  267 (384)
T d2omza2         195 KLTNLESLIATNNQIS-DITP-LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQ--IS-NLA-PLSGLTKLTE  267 (384)
T ss_dssp             GCTTCSEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC--CC-CCG-GGTTCTTCSE
T ss_pred             cccccceeeccCCccC-CCCc-ccccCCCCEEECCCCCCCCc-chhhcccccchhccccCc--cC-CCC-cccccccCCE
Confidence            4555566666533322 2221 3445566666666665 332 345556666666666652  22 222 2555666666


Q ss_pred             EEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc--------CCCCCcccEEEec
Q 043839          266 LKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ--------NSSFPLLKILHLK  335 (415)
Q Consensus       266 L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~--------~~~~~~L~~L~l~  335 (415)
                      |+++. +      ++  ++.+..+ +.++.+.+..|.+.+  +..+..+++++.|++++        ...+++|++|+++
T Consensus       268 L~l~~-~------~l~~~~~~~~~-~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~  337 (384)
T d2omza2         268 LKLGA-N------QISNISPLAGL-TALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFA  337 (384)
T ss_dssp             EECCS-S------CCCCCGGGTTC-TTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECC
T ss_pred             eeccC-c------ccCCCCccccc-ccccccccccccccc--ccccchhcccCeEECCCCCCCCCcccccCCCCCEEECC
Confidence            66655 2      11  3334445 566666666665532  33456667777777665        3456677777777


Q ss_pred             cCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEec
Q 043839          336 SMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHW  384 (415)
Q Consensus       336 ~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~  384 (415)
                      +| .++.++ .++.+++|++|++++|... ++++ +.++++|+.|+|++
T Consensus       338 ~n-~l~~l~-~l~~l~~L~~L~l~~N~l~-~l~~-l~~l~~L~~L~L~~  382 (384)
T d2omza2         338 NN-KVSDVS-SLANLTNINWLSAGHNQIS-DLTP-LANLTRITQLGLND  382 (384)
T ss_dssp             SS-CCCCCG-GGGGCTTCCEEECCSSCCC-BCGG-GTTCTTCSEEECCC
T ss_pred             CC-CCCCCh-hHcCCCCCCEEECCCCcCC-CChh-hccCCCCCEeeCCC
Confidence            76 555554 4666777777777777554 3443 66677777777765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.79  E-value=8.7e-20  Score=168.75  Aligned_cols=239  Identities=14%  Similarity=0.092  Sum_probs=188.6

Q ss_pred             CCceeEEEEEeCCCCC---ccCCCC--CCceeEEEeec-CCCccccccchHHHhccCCcccEEEcCCcccc-cCcccccC
Q 043839           99 LANVKRCFILKDLTEF---FPLEHS--DMYLQSFLNHS-SESDHLAGIDCENFCKKFKHLRVLNLGSAVLD-LYPPGLEN  171 (415)
Q Consensus        99 ~~~~r~l~l~~~~~~~---~~~~~~--~~~Lr~L~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~  171 (415)
                      ..+++.+.+. +....   .++..+  +++|++|.+.+ +..    ...+|..+.++++|++|++++|.+. ..|..+..
T Consensus        49 ~~~v~~L~L~-~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l----~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~  123 (313)
T d1ogqa_          49 TYRVNNLDLS-GLNLPKPYPIPSSLANLPYLNFLYIGGINNL----VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ  123 (313)
T ss_dssp             CCCEEEEEEE-CCCCSSCEECCGGGGGCTTCSEEEEEEETTE----ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred             cEEEEEEECC-CCCCCCCCCCChHHhcCcccccccccccccc----ccccccccccccccchhhhccccccccccccccc
Confidence            3468888888 76554   355666  99999999986 444    2234677999999999999999988 66677889


Q ss_pred             ccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCcccc-ceeccccCC--CCCccccCCCCCCCeE
Q 043839          172 LFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDL-IFISAVHPS--SCTPDILGRLPNVQTL  240 (415)
Q Consensus       172 l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L-~~L~l~~~~--~~~~~~l~~l~~L~~L  240 (415)
                      +.+|+++++++        ..++++++|+++++++|...+.+|..++.+.++ +.+.+..+.  +..+..++.+..+ .+
T Consensus       124 ~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l  202 (313)
T d1ogqa_         124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FV  202 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EE
T ss_pred             hhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            99999999988        578899999999999888888899999888886 778777777  5666677666544 68


Q ss_pred             EEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc---ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCe
Q 043839          241 RISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM---ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEV  317 (415)
Q Consensus       241 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L---lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~  317 (415)
                      ++..+  ...+..|..+..+++++.+++.. +      .+   +|.+..+ ++|+.|++++|.+++.+|..++++++|++
T Consensus       203 ~l~~~--~~~~~~~~~~~~~~~l~~l~~~~-~------~l~~~~~~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~  272 (313)
T d1ogqa_         203 DLSRN--MLEGDASVLFGSDKNTQKIHLAK-N------SLAFDLGKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHS  272 (313)
T ss_dssp             ECCSS--EEEECCGGGCCTTSCCSEEECCS-S------EECCBGGGCCCC-TTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred             ccccc--ccccccccccccccccccccccc-c------cccccccccccc-cccccccCccCeecccCChHHhCCCCCCE
Confidence            88777  56777888888999999999987 3      22   3367778 99999999999998899999887776666


Q ss_pred             EeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCCh
Q 043839          318 LKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLP  368 (415)
Q Consensus       318 L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp  368 (415)
                      |++              ++|...+.+| ..+.+++|+.+++++|+.+...|
T Consensus       273 L~L--------------s~N~l~g~iP-~~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         273 LNV--------------SFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             EEC--------------CSSEEEEECC-CSTTGGGSCGGGTCSSSEEESTT
T ss_pred             EEC--------------cCCcccccCC-CcccCCCCCHHHhCCCccccCCC
Confidence            655              6763333666 46889999999999998665444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.9e-17  Score=156.76  Aligned_cols=242  Identities=20%  Similarity=0.196  Sum_probs=158.6

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEE
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHL  194 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L  194 (415)
                      ..++++|.+.++.+.    .+  ..+..+++|++|++++|.++.+|. ++++++|++|++++      ..++++++|+.|
T Consensus        43 l~~l~~L~l~~~~I~----~l--~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L  115 (384)
T d2omza2          43 LDQVTTLQADRLGIK----SI--DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGL  115 (384)
T ss_dssp             HTTCCEEECCSSCCC----CC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred             hCCCCEEECCCCCCC----Cc--cccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccccccccccccc
Confidence            668999999988873    22  347889999999999999998875 99999999999998      568899999999


Q ss_pred             EecCCCCCCCC---------------------------------------------------------------CCcccC
Q 043839          195 NFGSITMPSPP---------------------------------------------------------------NNYSSS  211 (415)
Q Consensus       195 ~l~~~~~~~~~---------------------------------------------------------------p~~i~~  211 (415)
                      +++++......                                                               +.....
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (384)
T d2omza2         116 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK  195 (384)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccc
Confidence            99854322110                                                               011222


Q ss_pred             ccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCC
Q 043839          212 LKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPT  290 (415)
Q Consensus       212 l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~  290 (415)
                      +++++.+.+.++. ..++. .+.+++|++|+++++.   ...+ ..+..+++|+.++++. +.+-.    ++.+..+ ++
T Consensus       196 l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~---l~~~-~~l~~l~~L~~L~l~~-n~l~~----~~~~~~~-~~  264 (384)
T d2omza2         196 LTNLESLIATNNQISDITP-LGILTNLDELSLNGNQ---LKDI-GTLASLTNLTDLDLAN-NQISN----LAPLSGL-TK  264 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSC---CCCC-GGGGGCTTCSEEECCS-SCCCC----CGGGTTC-TT
T ss_pred             ccccceeeccCCccCCCCc-ccccCCCCEEECCCCC---CCCc-chhhcccccchhcccc-CccCC----CCccccc-cc
Confidence            3344444444443 22221 2334555555555541   1111 2344555555555554 21000    3334455 66


Q ss_pred             ceEEEEEccccCCCCchhhcCCCCCCeEeecc--------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCc
Q 043839          291 LTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ--------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCA  362 (415)
Q Consensus       291 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~--------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~  362 (415)
                      |++|+++++.+.+.  ..+..++.++.+.+..        ...+++++.|++++| .+++++ .+..+++|++|++++|.
T Consensus       265 L~~L~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n-~l~~l~-~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         265 LTELKLGANQISNI--SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDIS-PVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             CSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCG-GGGGCTTCCEEECCSSC
T ss_pred             CCEeeccCcccCCC--CccccccccccccccccccccccccchhcccCeEECCCC-CCCCCc-ccccCCCCCEEECCCCC
Confidence            66666666665321  2345556666666554        345678999999988 666664 47899999999999996


Q ss_pred             ccCCChhhhcCCCCCCeEEEecCC
Q 043839          363 YLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       363 ~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      .. .+| .+..+++|++|++++|.
T Consensus       341 l~-~l~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         341 VS-DVS-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             CC-CCG-GGGGCTTCCEEECCSSC
T ss_pred             CC-CCh-hHcCCCCCCEEECCCCc
Confidence            64 566 68999999999999876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=5e-17  Score=149.30  Aligned_cols=225  Identities=16%  Similarity=0.129  Sum_probs=143.1

Q ss_pred             cccEEEcCCcccccCcc-cccCccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccc
Q 043839          151 HLRVLNLGSAVLDLYPP-GLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAV  221 (415)
Q Consensus       151 ~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~  221 (415)
                      ++++|++++|.++.+|+ .+.++++|++|++++        ..+.++++|++|++++|. ...+|..+  ...++.|...
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~~--~~~l~~L~~~  108 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM--PKTLQELRVH  108 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC--CTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccch--hhhhhhhhcc
Confidence            44555555555544443 344445555555444        234555666666666343 34455433  2456666666


Q ss_pred             cCC-CCCc-cccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEcc
Q 043839          222 HPS-SCTP-DILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNT  299 (415)
Q Consensus       222 ~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~  299 (415)
                      .+. ..++ ..+.....++.+....+........+..+..+++|+.+++.. +.+-+    +| ...+ ++|++|++++|
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~-n~l~~----l~-~~~~-~~L~~L~l~~n  181 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITT----IP-QGLP-PSLTELHLDGN  181 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCS----CC-SSCC-TTCSEEECTTS
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcccccc-CCccc----cC-cccC-CccCEEECCCC
Confidence            665 3333 234556666677666653223333445566777777777776 31100    33 1124 78888888888


Q ss_pred             ccCCCCchhhcCCCCCCeEeecc----------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChh
Q 043839          300 KLMEDPMPTLEKLPLLEVLKLKQ----------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPE  369 (415)
Q Consensus       300 ~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~  369 (415)
                      ......+..+..++.++.|++++          ..++++|++|++++| .++.+|..+..+++|+.|++++|... .++.
T Consensus       182 ~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~i~-~i~~  259 (305)
T d1xkua_         182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNIS-AIGS  259 (305)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred             cCCCCChhHhhccccccccccccccccccccccccccccceeeecccc-cccccccccccccCCCEEECCCCccC-ccCh
Confidence            77666677778888888888876          345688999999999 78899988999999999999999754 5543


Q ss_pred             -------hhcCCCCCCeEEEecCCh
Q 043839          370 -------ELWCIKNLCKLELHWPQP  387 (415)
Q Consensus       370 -------~l~~l~~L~~L~l~~c~~  387 (415)
                             .....++|+.|++.++|.
T Consensus       260 ~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         260 NDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             TSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             hhccCcchhcccCCCCEEECCCCcC
Confidence                   234578999999999884

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2e-16  Score=142.31  Aligned_cols=189  Identities=21%  Similarity=0.188  Sum_probs=93.4

Q ss_pred             cCCcccEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCCcccCccccceec
Q 043839          148 KFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFIS  219 (415)
Q Consensus       148 ~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~  219 (415)
                      +...+...+.+++.++.+|..+.  +++++|+|++        ..+.++++|++|++++|.+ ..+|. ++.+++|++|+
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l-~~l~~-~~~l~~L~~L~   83 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQV-DGTLPVLGTLD   83 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEEC-CSCCTTCCEEE
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccc-ccccc-ccccccccccc
Confidence            34455556777777777776553  3455555554        2234444444444443322 22322 34455555555


Q ss_pred             cccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCCCCCceEEEEEc
Q 043839          220 AVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSN  298 (415)
Q Consensus       220 l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~  298 (415)
                      ++++. ...+..+..+++|+.|+++++  ......+.                           .+..+ .+++.|.+++
T Consensus        84 Ls~N~l~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~---------------------------~~~~l-~~l~~L~l~~  133 (266)
T d1p9ag_          84 LSHNQLQSLPLLGQTLPALTVLDVSFN--RLTSLPLG---------------------------ALRGL-GELQELYLKG  133 (266)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSS--CCCCCCSS---------------------------TTTTC-TTCCEEECTT
T ss_pred             ccccccccccccccccccccccccccc--ccceeecc---------------------------ccccc-cccccccccc
Confidence            55554 444444455555555555554  12111111                           33444 5666666666


Q ss_pred             cccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEE-cCCCccCccEEEEecCcccCCChhhhcCCCCC
Q 043839          299 TKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTM-GAGSMPKLESLILNPCAYLRKLPEELWCIKNL  377 (415)
Q Consensus       299 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L  377 (415)
                      |.+....+..+..+++              |+.+++++| .++.++. .++.+++|++|++++|... .+|+++..+++|
T Consensus       134 n~l~~l~~~~~~~l~~--------------l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L  197 (266)
T d1p9ag_         134 NELKTLPPGLLTPTPK--------------LEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL  197 (266)
T ss_dssp             SCCCCCCTTTTTTCTT--------------CCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred             cccceecccccccccc--------------chhcccccc-cccccCccccccccccceeecccCCCc-ccChhHCCCCCC
Confidence            6554333333333333              333333444 3444442 3455666666666666543 566556566666


Q ss_pred             CeEEEecCC
Q 043839          378 CKLELHWPQ  386 (415)
Q Consensus       378 ~~L~l~~c~  386 (415)
                      +.|++++.|
T Consensus       198 ~~L~L~~Np  206 (266)
T d1p9ag_         198 PFAFLHGNP  206 (266)
T ss_dssp             SEEECCSCC
T ss_pred             CEEEecCCC
Confidence            666666544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=7.8e-16  Score=141.18  Aligned_cols=243  Identities=14%  Similarity=0.114  Sum_probs=110.7

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccC-cccccCccCCceEecCcccc-----cccccCcEE
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLY-PPGLENLFHLKYLKLITPLL-----KLMQKLMHL  194 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~i-----~~l~~L~~L  194 (415)
                      .++++.|.+.++..    ..+.+..|.++++|++|+++++.+..+ |..+.++++|++|++++..+     .....++.|
T Consensus        30 ~~~l~~L~Ls~N~i----~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L  105 (305)
T d1xkua_          30 PPDTALLDLQNNKI----TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL  105 (305)
T ss_dssp             CTTCCEEECCSSCC----CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEE
T ss_pred             CCCCCEEECcCCcC----CCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhh
Confidence            44555555555544    333333455555555555555555533 34455555555555554111     112344555


Q ss_pred             EecCCCCCCCCCCcccCccccceeccccCC----CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeec
Q 043839          195 NFGSITMPSPPNNYSSSLKDLIFISAVHPS----SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVN  270 (415)
Q Consensus       195 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~  270 (415)
                      ++.++......+..+.....++.+....+.    ...+..+..+++|+.+.+.++.   ...++..  .+++|+.|++++
T Consensus       106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~---l~~l~~~--~~~~L~~L~l~~  180 (305)
T d1xkua_         106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN---ITTIPQG--LPPSLTELHLDG  180 (305)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC---CCSCCSS--CCTTCSEEECTT
T ss_pred             hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC---ccccCcc--cCCccCEEECCC
Confidence            554332222111122233333344333332    2222233444445555544441   1111111  134444444444


Q ss_pred             Cccccccccccc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc---------CCCCCcccEEEeccCCCc
Q 043839          271 EGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ---------NSSFPLLKILHLKSMLWL  340 (415)
Q Consensus       271 ~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---------~~~~~~L~~L~l~~~~~l  340 (415)
                       +....   ..+ .+..+ +.++.|++++|.+.+..+..+..+++|++|++++         ...+++|++|++++| .+
T Consensus       181 -n~~~~---~~~~~~~~~-~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N-~i  254 (305)
T d1xkua_         181 -NKITK---VDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN-NI  254 (305)
T ss_dssp             -SCCCE---ECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS-CC
T ss_pred             -CcCCC---CChhHhhcc-ccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCC-cc
Confidence             10000   022 33444 4455555555544443344444455555555444         233556666777777 56


Q ss_pred             cceEE-------cCCCccCccEEEEecCccc-CCCh-hhhcCCCCCC
Q 043839          341 EEWTM-------GAGSMPKLESLILNPCAYL-RKLP-EELWCIKNLC  378 (415)
Q Consensus       341 ~~l~~-------~~~~l~~L~~L~l~~c~~~-~~lp-~~l~~l~~L~  378 (415)
                      +.++.       .....++|+.|++++|+.. ..++ ..+..+....
T Consensus       255 ~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~  301 (305)
T d1xkua_         255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA  301 (305)
T ss_dssp             CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred             CccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCc
Confidence            66642       2345788999999999853 2344 3344443333

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7e-16  Score=140.07  Aligned_cols=194  Identities=16%  Similarity=0.101  Sum_probs=99.1

Q ss_pred             CcccEEEcCCcccccCcc-cccCccCCceEecCcccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CC
Q 043839          150 KHLRVLNLGSAVLDLYPP-GLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SC  226 (415)
Q Consensus       150 ~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~  226 (415)
                      +.+++|+|++|.++.+|. .+.++++|++|++++                +.+....+..+..+..++.+......  ..
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~----------------n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~   95 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHS----------------NVLARIDAAAFTGLALLEQLDLSDNAQLRS   95 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCS----------------SCCCEECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred             CCCCEEECcCCcCCCCCHHHhhcccccccccccc----------------cccccccccccccccccccccccccccccc
Confidence            346667777766665553 344444444444443                33322222333344444444333222  22


Q ss_pred             C-ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEcccc
Q 043839          227 T-PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKL  301 (415)
Q Consensus       227 ~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l  301 (415)
                      + +..+..+++|+.|+++.+  ......+..+....+|+.+++.. +      ++  +|  .+..+ ++|+.|++++|.+
T Consensus        96 l~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~~~~L~~l~l~~-N------~l~~i~~~~f~~~-~~L~~L~l~~N~l  165 (284)
T d1ozna_          96 VDPATFHGLGRLHTLHLDRC--GLQELGPGLFRGLAALQYLYLQD-N------ALQALPDDTFRDL-GNLTHLFLHGNRI  165 (284)
T ss_dssp             CCTTTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECCS-S------CCCCCCTTTTTTC-TTCCEEECCSSCC
T ss_pred             ccchhhcccccCCEEecCCc--ccccccccccchhcccchhhhcc-c------cccccChhHhccc-cchhhcccccCcc
Confidence            2 333445555555555554  12222222333344444444444 2      11  32  34445 5566666666555


Q ss_pred             CCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccce-EEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeE
Q 043839          302 MEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEW-TMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKL  380 (415)
Q Consensus       302 ~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L  380 (415)
                      ....+..+..+              ++|+++.+++| .+..+ |..++.+++|++|++++|...+..|..++.+++|++|
T Consensus       166 ~~l~~~~f~~l--------------~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L  230 (284)
T d1ozna_         166 SSVPERAFRGL--------------HSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL  230 (284)
T ss_dssp             CEECTTTTTTC--------------TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             cccchhhhccc--------------cccchhhhhhc-cccccChhHhhhhhhcccccccccccccccccccccccccCEE
Confidence            43333343333              44555555666 33333 4567777888888888877766556677778888888


Q ss_pred             EEec
Q 043839          381 ELHW  384 (415)
Q Consensus       381 ~l~~  384 (415)
                      ++++
T Consensus       231 ~l~~  234 (284)
T d1ozna_         231 RLND  234 (284)
T ss_dssp             ECCS
T ss_pred             EecC
Confidence            8776

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.3e-15  Score=138.17  Aligned_cols=195  Identities=20%  Similarity=0.182  Sum_probs=143.1

Q ss_pred             CccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCc-ccccCccCCceEecCc---------c
Q 043839          114 FFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYP-PGLENLFHLKYLKLIT---------P  183 (415)
Q Consensus       114 ~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~---------~  183 (415)
                      ..+|..+.+.+++|.+.++..    ..+.+..|.++++|++|+++++.+..++ ..+..+..++.+....         .
T Consensus        24 ~~iP~~ip~~~~~L~Ls~N~i----~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          24 QAVPVGIPAASQRIFLHGNRI----SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             SSCCTTCCTTCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CccCCCCCCCCCEEECcCCcC----CCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccch
Confidence            345555577889999999988    5666678999999999999999988444 4445677777776554         4


Q ss_pred             cccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCc-cccCCCCCCCeEEEecccCcchhcHHHhhhccC
Q 043839          184 LLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTP-DILGRLPNVQTLRISGDLSYHHSGVSKSLCELH  261 (415)
Q Consensus       184 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~  261 (415)
                      .++++++|++|++++|......+..++...+|+.+++.++. ..++ ..+..+++|+.|+++++  ......+..+..++
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N--~l~~l~~~~f~~l~  177 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN--RISSVPERAFRGLH  177 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCT
T ss_pred             hhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccC--cccccchhhhcccc
Confidence            56778888888888665544455567778888888888887 5554 45677888888888887  34444455667788


Q ss_pred             CCcEEEeecCccccccccc---cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc
Q 043839          262 KLECLKLVNEGKMWQFSRM---IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ  322 (415)
Q Consensus       262 ~L~~L~l~~~~~il~~l~L---lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  322 (415)
                      +|+.++++. +      ++   .| ++..+ ++|++|++++|.+.+..+..++.+++|++|++++
T Consensus       178 ~L~~l~l~~-N------~l~~i~~~~f~~l-~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         178 SLDRLLLHQ-N------RVAHVHPHAFRDL-GRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             TCCEEECCS-S------CCCEECTTTTTTC-TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             ccchhhhhh-c------cccccChhHhhhh-hhcccccccccccccccccccccccccCEEEecC
Confidence            888888877 4      23   45 77788 8888888888888776677777777777666643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.8e-15  Score=134.72  Aligned_cols=169  Identities=20%  Similarity=0.127  Sum_probs=111.1

Q ss_pred             cccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCc-cccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcE
Q 043839          188 MQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTP-DILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLEC  265 (415)
Q Consensus       188 l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~  265 (415)
                      ...+.+.+.+ +.....+|.++.  +++++|++.++. ..++ ..+..+++|++|++++|.  . ..++ .++.+++|+.
T Consensus         9 ~~~~~~v~C~-~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~--l-~~l~-~~~~l~~L~~   81 (266)
T d1p9ag_           9 VASHLEVNCD-KRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE--L-TKLQ-VDGTLPVLGT   81 (266)
T ss_dssp             STTCCEEECT-TSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC--C-CEEE-CCSCCTTCCE
T ss_pred             cCCCeEEEcc-CCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccc--c-cccc-cccccccccc
Confidence            3445555665 333446777664  578888888887 5555 457788888888888872  2 2222 2345566666


Q ss_pred             EEeecCccccccccc--cc-CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccc
Q 043839          266 LKLVNEGKMWQFSRM--IL-SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEE  342 (415)
Q Consensus       266 L~l~~~~~il~~l~L--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~  342 (415)
                      |+++. |      ++  .+ .+..+ ++|+.|+++++.+....+..+.              .++++++|.+++| .++.
T Consensus        82 L~Ls~-N------~l~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~--------------~l~~l~~L~l~~n-~l~~  138 (266)
T d1p9ag_          82 LDLSH-N------QLQSLPLLGQTL-PALTVLDVSFNRLTSLPLGALR--------------GLGELQELYLKGN-ELKT  138 (266)
T ss_dssp             EECCS-S------CCSSCCCCTTTC-TTCCEEECCSSCCCCCCSSTTT--------------TCTTCCEEECTTS-CCCC
T ss_pred             ccccc-c------cccccccccccc-cccccccccccccceeeccccc--------------ccccccccccccc-ccce
Confidence            66665 3      22  34 55556 6666666666655433333333              3456667777777 5666


Q ss_pred             eEE-cCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          343 WTM-GAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       343 l~~-~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      ++. .+..+++|+.+++++|......+..+..+++|++|+++++.
T Consensus       139 l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             eccccccccccchhcccccccccccCccccccccccceeecccCC
Confidence            664 46789999999999998876555678899999999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=5.7e-14  Score=122.87  Aligned_cols=166  Identities=16%  Similarity=0.188  Sum_probs=97.4

Q ss_pred             ccccccCcEEEecCCCCCCCCCCcccCccccceeccccCCCCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCc
Q 043839          185 LKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLE  264 (415)
Q Consensus       185 i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~  264 (415)
                      ++.+++|++|++++|.+.. ++ .+..+++|+++.+.++...-...+..+++|+.+.++++.  ...  ...+...+.+.
T Consensus        59 l~~l~~L~~L~ls~n~i~~-~~-~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~--~~~--~~~~~~~~~~~  132 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITD-LA-PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ--ITD--VTPLAGLSNLQ  132 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-GGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSC--CCC--CGGGTTCTTCC
T ss_pred             HhcCCCCcEeecCCceeec-cc-ccccccccccccccccccccccccccccccccccccccc--ccc--cchhccccchh
Confidence            4445555555555444332 22 256666677776666652223345666677776666652  111  12234445555


Q ss_pred             EEEeecCccccccccc--ccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccc
Q 043839          265 CLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEE  342 (415)
Q Consensus       265 ~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~  342 (415)
                      .+.++. +      .+  .+.+... ++|++|.+++|.+...  ..+              ..+++|++|++++| .+++
T Consensus       133 ~l~~~~-~------~~~~~~~~~~~-~~L~~L~l~~n~~~~~--~~l--------------~~l~~L~~L~Ls~n-~l~~  187 (227)
T d1h6ua2         133 VLYLDL-N------QITNISPLAGL-TNLQYLSIGNAQVSDL--TPL--------------ANLSKLTTLKADDN-KISD  187 (227)
T ss_dssp             EEECCS-S------CCCCCGGGGGC-TTCCEEECCSSCCCCC--GGG--------------TTCTTCCEEECCSS-CCCC
T ss_pred             hhhchh-h------hhchhhhhccc-cccccccccccccccc--hhh--------------cccccceecccCCC-ccCC
Confidence            555544 1      11  1123344 5566666666554321  123              34566777777887 6777


Q ss_pred             eEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEec
Q 043839          343 WTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHW  384 (415)
Q Consensus       343 l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~  384 (415)
                      ++ .++.+++|++|++++|+.. ++| .++++++|+.|++++
T Consensus       188 l~-~l~~l~~L~~L~Ls~N~lt-~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 IS-PLASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CG-GGGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEEEE
T ss_pred             Ch-hhcCCCCCCEEECcCCcCC-CCc-ccccCCCCCEEEeeC
Confidence            65 3789999999999999654 677 488999999999974

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=6.9e-14  Score=122.30  Aligned_cols=181  Identities=19%  Similarity=0.202  Sum_probs=120.3

Q ss_pred             ccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceecc
Q 043839          147 KKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISA  220 (415)
Q Consensus       147 ~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l  220 (415)
                      ..+.+|+.|++.+|.++.++ .+..+++|++|++++      ..+.++++|+++++++|. ...++ +++.+++|+++.+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred             HHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccccccccccccccccccc-ccccc-ccccccccccccc
Confidence            44556666666666666553 466666666666666      446677777777777443 33443 4778888888888


Q ss_pred             ccCCCCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--ccCCCCCCCCceEEEEEc
Q 043839          221 VHPSSCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--ILSEYKFPPTLTQLSLSN  298 (415)
Q Consensus       221 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp~~~~lp~~L~~L~l~~  298 (415)
                      .++.......+...+.++.+.+..+.  ....  ..+..+++|+.|++++ +      ++  .+.+..+ ++|+.|++++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~--~~~~~~~~L~~L~l~~-n------~~~~~~~l~~l-~~L~~L~Ls~  182 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQ--ITNI--SPLAGLTNLQYLSIGN-A------QVSDLTPLANL-SKLTTLKADD  182 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSC--CCCC--GGGGGCTTCCEEECCS-S------CCCCCGGGTTC-TTCCEEECCS
T ss_pred             ccccccccchhccccchhhhhchhhh--hchh--hhhccccccccccccc-c------ccccchhhccc-ccceecccCC
Confidence            87773334446677888888887762  2222  2366778888888877 3      11  2356778 8999999999


Q ss_pred             cccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEec
Q 043839          299 TKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNP  360 (415)
Q Consensus       299 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~  360 (415)
                      |.+++ + +.++.+              ++|++|++++| .+++++ .++.+++|+.|++++
T Consensus       183 n~l~~-l-~~l~~l--------------~~L~~L~Ls~N-~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         183 NKISD-I-SPLASL--------------PNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             SCCCC-C-GGGGGC--------------TTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEE
T ss_pred             CccCC-C-hhhcCC--------------CCCCEEECcCC-cCCCCc-ccccCCCCCEEEeeC
Confidence            98753 2 234444              45556666777 677775 478899999998874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.3e-15  Score=135.51  Aligned_cols=209  Identities=16%  Similarity=0.158  Sum_probs=100.8

Q ss_pred             cEEEcCCcccccCcccccCccCCceEecCc---------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccC
Q 043839          153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT---------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHP  223 (415)
Q Consensus       153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~---------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~  223 (415)
                      ..+.+.................|++|++++         ..+.++++|++|+++++......+..++.+++|++|++++|
T Consensus        26 ~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          26 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             SEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             eEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccc
Confidence            344444443332222233344556666554         22345566666666645444444445556666666666665


Q ss_pred             C----CCCccccCCCCCCCeEEEecccCcchhcHHHhhhc-cCCCcEEEeecC-ccccccccccc-CCCCCCCCceEEEE
Q 043839          224 S----SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCE-LHKLECLKLVNE-GKMWQFSRMIL-SEYKFPPTLTQLSL  296 (415)
Q Consensus       224 ~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~-~~il~~l~Llp-~~~~lp~~L~~L~l  296 (415)
                      .    ..+......+++|++|++++|.....+.+...+.. .++|+.|++++. ..+-.  .-+. ....+ ++|++|++
T Consensus       106 ~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~--~~l~~l~~~~-~~L~~L~L  182 (284)
T d2astb2         106 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK--SDLSTLVRRC-PNLVHLDL  182 (284)
T ss_dssp             BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH--HHHHHHHHHC-TTCSEEEC
T ss_pred             ccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccc--cccccccccc-cccccccc
Confidence            4    11222234566666666666531112233333333 245666666541 10000  0011 22334 56666666


Q ss_pred             Eccc-cCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccc-eEEcCCCccCccEEEEecCcccCCChhhhcCC
Q 043839          297 SNTK-LMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEE-WTMGAGSMPKLESLILNPCAYLRKLPEELWCI  374 (415)
Q Consensus       297 ~~~~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l  374 (415)
                      ++|. +++..+..+++              +++|++|++++|..++. -...++.+|+|+.|++++|-..+.++.....+
T Consensus       183 ~~~~~itd~~~~~l~~--------------~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~l  248 (284)
T d2astb2         183 SDSVMLKNDCFQEFFQ--------------LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEAL  248 (284)
T ss_dssp             TTCTTCCGGGGGGGGG--------------CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHS
T ss_pred             ccccCCCchhhhhhcc--------------cCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhC
Confidence            6553 33333444443              34555556667665552 22346677888888888874333344333445


Q ss_pred             CCCC
Q 043839          375 KNLC  378 (415)
Q Consensus       375 ~~L~  378 (415)
                      |.|+
T Consensus       249 p~L~  252 (284)
T d2astb2         249 PHLQ  252 (284)
T ss_dssp             TTSE
T ss_pred             cccc
Confidence            5554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=1.4e-13  Score=117.79  Aligned_cols=94  Identities=18%  Similarity=0.217  Sum_probs=38.8

Q ss_pred             CCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCcccCccccceecccc
Q 043839          149 FKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVH  222 (415)
Q Consensus       149 ~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~  222 (415)
                      +.++++|+++++.++.+. .+..+++|++|++++      ..++++++|++|++++|. ...++ .++.+++|+.|++.+
T Consensus        39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGLTLFN  115 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEECCS
T ss_pred             hcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCcccccCCcccccccccccc-ccccc-ccccccccccccccc
Confidence            445555555555554432 233334444443333      122333334444444222 22222 244444455554444


Q ss_pred             CCCCCccccCCCCCCCeEEEecc
Q 043839          223 PSSCTPDILGRLPNVQTLRISGD  245 (415)
Q Consensus       223 ~~~~~~~~l~~l~~L~~L~l~~~  245 (415)
                      +.......+..+++|+.|+++++
T Consensus       116 ~~~~~~~~~~~l~~L~~L~l~~n  138 (199)
T d2omxa2         116 NQITDIDPLKNLTNLNRLELSSN  138 (199)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSS
T ss_pred             cccccccccchhhhhHHhhhhhh
Confidence            44222223444455555555444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=2.5e-13  Score=117.21  Aligned_cols=123  Identities=23%  Similarity=0.268  Sum_probs=60.0

Q ss_pred             ccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcccccccccccCCCCC
Q 043839          209 SSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMILSEYKF  287 (415)
Q Consensus       209 i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp~~~~l  287 (415)
                      ++.+++|++|++.++. ..++ .+..+++|+.|++.++.  . ..+ ..+..+++++.+++++ +.+-.    .+++..+
T Consensus        86 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~--~-~~~-~~l~~l~~l~~l~~~~-n~l~~----~~~~~~l  155 (210)
T d1h6ta2          86 LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNG--I-SDI-NGLVHLPQLESLYLGN-NKITD----ITVLSRL  155 (210)
T ss_dssp             GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSC--C-CCC-GGGGGCTTCCEEECCS-SCCCC----CGGGGGC
T ss_pred             cccCccccccccccccccccc-ccccccccccccccccc--c-ccc-cccccccccccccccc-ccccc----ccccccc
Confidence            4445555555555554 3333 34555555555555542  1 111 2344555555555554 20000    2244455


Q ss_pred             CCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEcCCCccCccEEEEec
Q 043839          288 PPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNP  360 (415)
Q Consensus       288 p~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~  360 (415)
                       ++|+.+++++|.+.+ ++ .+++++              +|++|++++| .+++++ .+.++++|+.|++++
T Consensus       156 -~~L~~l~l~~n~l~~-i~-~l~~l~--------------~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         156 -TKLDTLSLEDNQISD-IV-PLAGLT--------------KLQNLYLSKN-HISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -TTCSEEECCSSCCCC-CG-GGTTCT--------------TCCEEECCSS-CCCBCG-GGTTCTTCSEEEEEE
T ss_pred             -ccccccccccccccc-cc-cccCCC--------------CCCEEECCCC-CCCCCh-hhcCCCCCCEEEccC
Confidence             666666666666542 21 233333              3344444555 455554 456667777776653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=2.9e-13  Score=116.77  Aligned_cols=165  Identities=22%  Similarity=0.210  Sum_probs=118.0

Q ss_pred             ccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcE
Q 043839          187 LMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLEC  265 (415)
Q Consensus       187 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~  265 (415)
                      .+.+|++|+++++ ....++ ++..+++|++|++.++. ..++ .++.+++|+.|++++|.   ...++ .+..+++|+.
T Consensus        44 ~L~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~---i~~l~-~l~~l~~L~~  116 (210)
T d1h6ta2          44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENK---VKDLS-SLKDLKKLKS  116 (210)
T ss_dssp             HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC---CCCGG-GGTTCTTCCE
T ss_pred             HhcCccEEECcCC-CCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCcccccccccccc---ccccc-cccccccccc
Confidence            4667778888744 334443 58889999999999988 5555 46889999999999882   33444 5777888888


Q ss_pred             EEeecCcccccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEE
Q 043839          266 LKLVNEGKMWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTM  345 (415)
Q Consensus       266 L~l~~~~~il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~  345 (415)
                      |++++ +.+-.    ++.+..+ ++++.+++++|.+++  +..++.              +++|+++++++| .++.++ 
T Consensus       117 L~l~~-~~~~~----~~~l~~l-~~l~~l~~~~n~l~~--~~~~~~--------------l~~L~~l~l~~n-~l~~i~-  172 (210)
T d1h6ta2         117 LSLEH-NGISD----INGLVHL-PQLESLYLGNNKITD--ITVLSR--------------LTKLDTLSLEDN-QISDIV-  172 (210)
T ss_dssp             EECTT-SCCCC----CGGGGGC-TTCCEEECCSSCCCC--CGGGGG--------------CTTCSEEECCSS-CCCCCG-
T ss_pred             ccccc-ccccc----ccccccc-ccccccccccccccc--cccccc--------------cccccccccccc-cccccc-
Confidence            88877 31100    3355566 778888888877643  223333              455666666777 566664 


Q ss_pred             cCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEec
Q 043839          346 GAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHW  384 (415)
Q Consensus       346 ~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~  384 (415)
                      .+..+++|+.|++++|... ++| .+.++++|++|+|++
T Consensus       173 ~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            4789999999999999754 677 699999999999975

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.2e-14  Score=129.94  Aligned_cols=216  Identities=19%  Similarity=0.152  Sum_probs=111.5

Q ss_pred             cEEEcCCcccccCcccccCcc--CCceEecCc-------ccccccccCcEEEecCCCCCCC-CCCcccCccccceecccc
Q 043839          153 RVLNLGSAVLDLYPPGLENLF--HLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSP-PNNYSSSLKDLIFISAVH  222 (415)
Q Consensus       153 ~~L~l~~~~~~~lp~~i~~l~--~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~-~p~~i~~l~~L~~L~l~~  222 (415)
                      +.+|++++.+.  |..++.+.  ....+.++.       .......+|++||++++..... ++..+..+++|++|++.+
T Consensus         3 ~~lDLs~~~l~--~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCC--chHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            47888887764  22222211  233333332       1222344566666663333221 222345556666666665


Q ss_pred             CC--CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCCCceEEEEEcc
Q 043839          223 PS--SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNT  299 (415)
Q Consensus       223 ~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~  299 (415)
                      |.  ...+..++.+++|++|++++|.......+......+++|++|+++++..+-+. . ++ .+...+++|+.|++++|
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~-~-~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-H-VQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-H-HHHHHHHSCTTCCEEECCSC
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccc-c-chhhhcccccccchhhhccc
Confidence            55  33444455556666666655421111222223334555555555541100000 0 11 11111144555555543


Q ss_pred             c--cCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCcc-ceEEcCCCccCccEEEEecCcccC-CChhhhcCCC
Q 043839          300 K--LMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLE-EWTMGAGSMPKLESLILNPCAYLR-KLPEELWCIK  375 (415)
Q Consensus       300 ~--l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~~~-~lp~~l~~l~  375 (415)
                      .  ++......+             ...+|+|++|++++|..++ .....++.+++|++|++++|..+. .....+.+++
T Consensus       159 ~~~i~~~~l~~l-------------~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~  225 (284)
T d2astb2         159 RKNLQKSDLSTL-------------VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP  225 (284)
T ss_dssp             GGGSCHHHHHHH-------------HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred             cccccccccccc-------------ccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCC
Confidence            2  111111111             2345677888888887776 444567889999999999997654 3345678899


Q ss_pred             CCCeEEEecC
Q 043839          376 NLCKLELHWP  385 (415)
Q Consensus       376 ~L~~L~l~~c  385 (415)
                      +|+.|++++|
T Consensus       226 ~L~~L~l~~~  235 (284)
T d2astb2         226 TLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTS
T ss_pred             CCCEEeeeCC
Confidence            9999999998

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.42  E-value=2.5e-12  Score=119.13  Aligned_cols=55  Identities=27%  Similarity=0.294  Sum_probs=44.7

Q ss_pred             CCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEecCC
Q 043839          324 SSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       324 ~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      ..+++|++|++++| .++.+|.   .+++|+.|++++|... ++|..   +++|++|++++|+
T Consensus       281 ~~~~~L~~L~Ls~N-~l~~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~  335 (353)
T d1jl5a_         281 DLPPSLEELNVSNN-KLIELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNP  335 (353)
T ss_dssp             CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSC
T ss_pred             ccCCCCCEEECCCC-ccCcccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCc
Confidence            34679999999998 6778874   4789999999999754 68753   5689999999987

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=2.9e-12  Score=109.42  Aligned_cols=154  Identities=19%  Similarity=0.176  Sum_probs=111.4

Q ss_pred             CCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEE
Q 043839          121 DMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHL  194 (415)
Q Consensus       121 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L  194 (415)
                      .+++++|.+.++...    .+  ..+..+++|++|++++|.++.++. ++++++|++|++++      +.++++++|++|
T Consensus        39 l~~l~~L~l~~~~i~----~l--~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIK----SI--DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCC----CC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             hcCCCEEECCCCCCC----Cc--cccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccccccccccccc
Confidence            567888888877763    22  236788999999999998887765 88899999999988      667888999999


Q ss_pred             EecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCcc
Q 043839          195 NFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGK  273 (415)
Q Consensus       195 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  273 (415)
                      +++++.. ..+ ..+..+++|+.|++.++. ..+ +.+..+++|+.|++.+|.  .. .                     
T Consensus       112 ~l~~~~~-~~~-~~~~~l~~L~~L~l~~n~l~~~-~~l~~~~~L~~L~l~~n~--l~-~---------------------  164 (199)
T d2omxa2         112 TLFNNQI-TDI-DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQ--VT-D---------------------  164 (199)
T ss_dssp             ECCSSCC-CCC-GGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSC--CC-C---------------------
T ss_pred             ccccccc-ccc-cccchhhhhHHhhhhhhhhccc-cccccccccccccccccc--cc-C---------------------
Confidence            9984443 333 347888999999998887 443 457889999999998872  21 1                     


Q ss_pred             cccccccccCCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeE
Q 043839          274 MWQFSRMILSEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVL  318 (415)
Q Consensus       274 il~~l~Llp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  318 (415)
                             ++.+..+ ++|++|++++|.+++ + +.++.+++|+.|
T Consensus       165 -------l~~l~~l-~~L~~L~ls~N~i~~-i-~~l~~L~~L~~L  199 (199)
T d2omxa2         165 -------LKPLANL-TTLERLDISSNKVSD-I-SVLAKLTNLESL  199 (199)
T ss_dssp             -------CGGGTTC-TTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred             -------CccccCC-CCCCEEECCCCCCCC-C-ccccCCCCCCcC
Confidence                   1223345 677777777777643 2 356777777765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2e-12  Score=113.83  Aligned_cols=206  Identities=18%  Similarity=0.069  Sum_probs=108.8

Q ss_pred             cEEEcCCcccccCcccccCccCCceEecCc--------ccccccccCcEEEecCCCCCCCCCC-cccCccccceeccccC
Q 043839          153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT--------PLLKLMQKLMHLNFGSITMPSPPNN-YSSSLKDLIFISAVHP  223 (415)
Q Consensus       153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~--------~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~  223 (415)
                      ++++.++..++.+|..+.  .++++|++++        ..+.++++|++|++++|.....++. .+..+++++++.+..+
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            344444444444444332  2344444443        2345566666666665555544433 3566777777776554


Q ss_pred             C---CCCccccCCCCCCCeEEEecccCcchhcHH--HhhhccCCCcEEEeecCccccccccccc--CCCCCCCCceEEEE
Q 043839          224 S---SCTPDILGRLPNVQTLRISGDLSYHHSGVS--KSLCELHKLECLKLVNEGKMWQFSRMIL--SEYKFPPTLTQLSL  296 (415)
Q Consensus       224 ~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~il~~l~Llp--~~~~lp~~L~~L~l  296 (415)
                      .   ...+..+..+++|+.+++.++.  .. ..+  ..+..+..+..+.... +.+..    ++  .+..++..++.|++
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~--l~-~~~~~~~~~~l~~l~~~~~~n-~~l~~----i~~~~~~~~~~~l~~L~l  160 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTG--IK-HLPDVHKIHSLQKVLLDIQDN-INIHT----IERNSFVGLSFESVILWL  160 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCC--CC-SCCCCTTTCBSSCEEEEEESC-TTCCE----ECTTSSTTSBSSCEEEEC
T ss_pred             ccccccccccccccccccccccchhh--hc-ccccccccccccccccccccc-ccccc----ccccccccccccceeeec
Confidence            3   3334456777778888777762  21 111  1112223333222222 10000    22  34444356777777


Q ss_pred             EccccCCCCchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceEEc-CCCccCccEEEEecCcccCCChh-hhcCC
Q 043839          297 SNTKLMEDPMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWTMG-AGSMPKLESLILNPCAYLRKLPE-ELWCI  374 (415)
Q Consensus       297 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~~~~lp~-~l~~l  374 (415)
                      .++.++. ++....+              .++++.+....+..++++|.. +.++++|+.|++++|... .+|. ++.++
T Consensus       161 ~~n~l~~-i~~~~~~--------------~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l  224 (242)
T d1xwdc1         161 NKNGIQE-IHNCAFN--------------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENL  224 (242)
T ss_dssp             CSSCCCE-ECTTTTT--------------TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTC
T ss_pred             ccccccc-ccccccc--------------chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCC
Confidence            7776542 2222222              233444444445578888754 688999999999998765 5663 46666


Q ss_pred             CCCCeEEEec
Q 043839          375 KNLCKLELHW  384 (415)
Q Consensus       375 ~~L~~L~l~~  384 (415)
                      +.|+.+++..
T Consensus       225 ~~L~~l~~~~  234 (242)
T d1xwdc1         225 KKLRARSTYN  234 (242)
T ss_dssp             CEEESSSEES
T ss_pred             cccccCcCCC
Confidence            6666666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.33  E-value=2.4e-11  Score=112.37  Aligned_cols=66  Identities=21%  Similarity=0.211  Sum_probs=50.7

Q ss_pred             cCCCCCCeEeecc------CCCCCcccEEEeccCCCccceEEcCCCccCccEEEEecCcccCCChhhhcCCCCCCeEEEe
Q 043839          310 EKLPLLEVLKLKQ------NSSFPLLKILHLKSMLWLEEWTMGAGSMPKLESLILNPCAYLRKLPEELWCIKNLCKLELH  383 (415)
Q Consensus       310 ~~l~~L~~L~l~~------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~  383 (415)
                      ..+++|++|++++      ...+++|+.|++++| .++++|.   .+++|++|++++|+. ..+|..   ..+|+.|.+.
T Consensus       281 ~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N-~L~~l~~---~~~~L~~L~L~~N~L-~~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         281 DLPPSLEELNVSNNKLIELPALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPL-REFPDI---PESVEDLRMN  352 (353)
T ss_dssp             CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCC-SSCCCC---CTTCCEEECC
T ss_pred             ccCCCCCEEECCCCccCccccccCCCCEEECCCC-cCCcccc---ccCCCCEEECcCCcC-CCCCcc---ccccCeeECc
Confidence            3457899999987      456789999999998 6788874   367899999999984 578853   3467777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7.8e-12  Score=109.91  Aligned_cols=65  Identities=8%  Similarity=-0.073  Sum_probs=38.3

Q ss_pred             CCCccCCCCCCceeEEEeecCCCccccccchHHHhccCCcccEEEcCCccccc-Cc-ccccCccCCceEec
Q 043839          112 TEFFPLEHSDMYLQSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDL-YP-PGLENLFHLKYLKL  180 (415)
Q Consensus       112 ~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-lp-~~i~~l~~L~~L~l  180 (415)
                      ....+|....+++++|.+.++..    ..+....|.++++|++|++++|.+.. ++ ..+.++++++++.+
T Consensus        19 ~l~~iP~~l~~~l~~L~Ls~n~i----~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          19 KVTEIPSDLPRNAIELRFVLTKL----RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SCSSCCSCSCSCCSEEEEESCCC----CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCCCcCCCCCCCCCEEECcCCcC----CccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            33345554455677777777766    44444567777777777777776652 22 23445555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.4e-11  Score=101.23  Aligned_cols=123  Identities=14%  Similarity=0.073  Sum_probs=86.3

Q ss_pred             hccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecCCCCCCCCCCc-ccCcccccee
Q 043839          146 CKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGSITMPSPPNNY-SSSLKDLIFI  218 (415)
Q Consensus       146 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L  218 (415)
                      +.++..+|+|+|++|.++.++.....+.+|++|++++      +.+..+++|++|++++|.+ ..+|.+ +..+++|++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCEE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccc-cCCCccccccccccccc
Confidence            5567788999999999888877667788888888888      5567778888888885544 445544 4568888888


Q ss_pred             ccccCC-CCCc--cccCCCCCCCeEEEecccCcchhc-HHHhhhccCCCcEEEee
Q 043839          219 SAVHPS-SCTP--DILGRLPNVQTLRISGDLSYHHSG-VSKSLCELHKLECLKLV  269 (415)
Q Consensus       219 ~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~l~~L~~L~l~  269 (415)
                      ++.++. ..++  ..+..+++|++|++.+|....... -+..+..+++|+.|+..
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            888887 4443  356778888888888873111111 12346677777777643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.17  E-value=4e-12  Score=118.06  Aligned_cols=226  Identities=14%  Similarity=0.091  Sum_probs=113.3

Q ss_pred             HHhccCCcccEEEcCCcccc-----cCcccccCccCCceEecCc------------------ccccccccCcEEEecCCC
Q 043839          144 NFCKKFKHLRVLNLGSAVLD-----LYPPGLENLFHLKYLKLIT------------------PLLKLMQKLMHLNFGSIT  200 (415)
Q Consensus       144 ~~~~~~~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~------------------~~i~~l~~L~~L~l~~~~  200 (415)
                      ..+.+...|+.|+|++|.+.     .+...+...++|+.+++++                  ..+..+++|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            44666777777777777654     2333344555666666653                  334456667777777554


Q ss_pred             CCCC----CCCcccCccccceeccccCC--C----CCccc---------cCCCCCCCeEEEeccc--CcchhcHHHhhhc
Q 043839          201 MPSP----PNNYSSSLKDLIFISAVHPS--S----CTPDI---------LGRLPNVQTLRISGDL--SYHHSGVSKSLCE  259 (415)
Q Consensus       201 ~~~~----~p~~i~~l~~L~~L~l~~~~--~----~~~~~---------l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~  259 (415)
                      +...    +...+...++|++|++.++.  .    .+...         ....+.|+.+.++++.  ......+...+..
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~  184 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  184 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence            4332    22223445666666666654  0    00000         1234566666666552  0112234444555


Q ss_pred             cCCCcEEEeecCcccc-ccc-cccc-CCCCCCCCceEEEEEccccCCCC----chhhcCCCCCCeEeeccCCCCCcccEE
Q 043839          260 LHKLECLKLVNEGKMW-QFS-RMIL-SEYKFPPTLTQLSLSNTKLMEDP----MPTLEKLPLLEVLKLKQNSSFPLLKIL  332 (415)
Q Consensus       260 l~~L~~L~l~~~~~il-~~l-~Llp-~~~~lp~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~L~~L  332 (415)
                      .++|+.|+++. +.+- +.+ .++. .+... ++|+.|++++|.++...    ...+.              .+++|++|
T Consensus       185 ~~~L~~L~L~~-n~i~~~g~~~~l~~~l~~~-~~L~~L~Ls~N~i~~~g~~~L~~~l~--------------~~~~L~~L  248 (344)
T d2ca6a1         185 HRLLHTVKMVQ-NGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALK--------------SWPNLREL  248 (344)
T ss_dssp             CTTCCEEECCS-SCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGG--------------GCTTCCEE
T ss_pred             hhhhccccccc-ccccccccccchhhhhcch-hhhccccccccccccccccccccccc--------------ccccchhh
Confidence            56666666655 3110 000 0011 23344 55666666666543221    12223              34556666


Q ss_pred             EeccCCCccc-----eEEcC--CCccCccEEEEecCcccC----CChhhhc-CCCCCCeEEEecCC
Q 043839          333 HLKSMLWLEE-----WTMGA--GSMPKLESLILNPCAYLR----KLPEELW-CIKNLCKLELHWPQ  386 (415)
Q Consensus       333 ~l~~~~~l~~-----l~~~~--~~l~~L~~L~l~~c~~~~----~lp~~l~-~l~~L~~L~l~~c~  386 (415)
                      ++++|. ++.     +...+  ...++|+.|++++|....    .+...+. ++++|+.|+++++.
T Consensus       249 ~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         249 GLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             ECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            666663 331     11111  234668888888876432    2334443 46778888887754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.07  E-value=3.2e-10  Score=88.48  Aligned_cols=90  Identities=22%  Similarity=0.246  Sum_probs=40.6

Q ss_pred             cEEEcCCcccccCcccccCccCCceEecCc-------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-
Q 043839          153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT-------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-  224 (415)
Q Consensus       153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-  224 (415)
                      |+|++++|+++.++. +..+++|++|++++       +.++.+++|++|++++|.+ ..+| +++.+++|++|++.++. 
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i-~~l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL-ENVD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC-CCCG-GGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccc-cccC-ccccccccCeEECCCCcc
Confidence            456666666654442 44444444444433       1223333344444442322 2233 25555555555555555 


Q ss_pred             CCCc--cccCCCCCCCeEEEecc
Q 043839          225 SCTP--DILGRLPNVQTLRISGD  245 (415)
Q Consensus       225 ~~~~--~~l~~l~~L~~L~l~~~  245 (415)
                      ..++  ..++.+++|+.|++++|
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTS
T ss_pred             CCCCCchhhcCCCCCCEEECCCC
Confidence            2222  23455555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=9.8e-11  Score=96.06  Aligned_cols=125  Identities=16%  Similarity=0.102  Sum_probs=76.3

Q ss_pred             ccccccCcEEEecCCCCCCCCCCcccCccccceeccccCC-CCCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCC
Q 043839          185 LKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SCTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKL  263 (415)
Q Consensus       185 i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L  263 (415)
                      +.+..++++|++++|. ...++..+..+++|++|+++++. ..+ +.+..+++|++|++++|  ......+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N--~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN--RICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS--CCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCC-CCccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccc--cccCCCcccccccccc
Confidence            4455667777777443 45556555677888888888887 444 34777888888888887  2322222234456777


Q ss_pred             cEEEeecCccccccccccc---CCCCCCCCceEEEEEccccCCCC---chhhcCCCCCCeEe
Q 043839          264 ECLKLVNEGKMWQFSRMIL---SEYKFPPTLTQLSLSNTKLMEDP---MPTLEKLPLLEVLK  319 (415)
Q Consensus       264 ~~L~l~~~~~il~~l~Llp---~~~~lp~~L~~L~l~~~~l~~~~---~~~l~~l~~L~~L~  319 (415)
                      +.|++++ |.+-.    ++   .+..+ ++|++|++++|.++...   +..++.+|+|++|+
T Consensus        90 ~~L~L~~-N~i~~----~~~l~~l~~l-~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTN-NSLVE----LGDLDPLASL-KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCS-CCCCC----GGGGGGGGGC-TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceecc-ccccc----cccccccccc-cccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            7777766 41100    22   34566 77777777777764322   22456667666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.9e-11  Score=117.03  Aligned_cols=97  Identities=15%  Similarity=0.028  Sum_probs=47.5

Q ss_pred             CCceEEEEEccccCCCCchhh----cCCCCCCeEeecc---------------CCCCCcccEEEeccCCCccc-----eE
Q 043839          289 PTLTQLSLSNTKLMEDPMPTL----EKLPLLEVLKLKQ---------------NSSFPLLKILHLKSMLWLEE-----WT  344 (415)
Q Consensus       289 ~~L~~L~l~~~~l~~~~~~~l----~~l~~L~~L~l~~---------------~~~~~~L~~L~l~~~~~l~~-----l~  344 (415)
                      ..|+.+.+++|.+.......+    ...++|+.|++++               ....+.|++|++++| .++.     +.
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~  390 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLA  390 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHH
Confidence            456666666665544332222    3345666666655               112345666666666 3331     22


Q ss_pred             EcCCCccCccEEEEecCcccCC----Chhhhc-CCCCCCeEEEecCC
Q 043839          345 MGAGSMPKLESLILNPCAYLRK----LPEELW-CIKNLCKLELHWPQ  386 (415)
Q Consensus       345 ~~~~~l~~L~~L~l~~c~~~~~----lp~~l~-~l~~L~~L~l~~c~  386 (415)
                      ..+..+++|++|++++|+....    +...+. +...|+.|++.++.
T Consensus       391 ~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         391 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             HHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             HHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence            2334456666666666654321    122232 23356666666544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=5.4e-10  Score=87.15  Aligned_cols=110  Identities=15%  Similarity=0.168  Sum_probs=83.6

Q ss_pred             eEEEeecCCCccccccchHHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccccccccCcEEEecC
Q 043839          125 QSFLNHSSESDHLAGIDCENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLLKLMQKLMHLNFGS  198 (415)
Q Consensus       125 r~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i~~l~~L~~L~l~~  198 (415)
                      |.|.+.++...    .+  ..+..+++|++|++++|.++.+|..++.+++|++|++++      +.++++++|++|++++
T Consensus         1 R~L~Ls~n~l~----~l--~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT----VL--CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS----SC--CCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC----CC--cccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCC
Confidence            56777777763    22  237889999999999999999998899999999999999      7788999999999996


Q ss_pred             CCCCCC-CCCcccCccccceeccccCC-C---CCcc-ccCCCCCCCeE
Q 043839          199 ITMPSP-PNNYSSSLKDLIFISAVHPS-S---CTPD-ILGRLPNVQTL  240 (415)
Q Consensus       199 ~~~~~~-~p~~i~~l~~L~~L~l~~~~-~---~~~~-~l~~l~~L~~L  240 (415)
                      |.+... .+..++.+++|++|++.++. .   ..+. ....+|+|+.|
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            655432 22458889999999999887 2   2222 23346666655

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.96  E-value=7.5e-10  Score=93.40  Aligned_cols=124  Identities=17%  Similarity=0.221  Sum_probs=67.6

Q ss_pred             ccEEEcCCcccccCcccccCccCCceEecCcccccccccCcEEEecCCCCCCCC-CCcccCccccceeccccCC--CCCc
Q 043839          152 LRVLNLGSAVLDLYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPSPP-NNYSSSLKDLIFISAVHPS--SCTP  228 (415)
Q Consensus       152 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~--~~~~  228 (415)
                      .++++.+++.++.+|..+.  .++++|+|++                |.+...+ +..++.+++|++|++.++.  ...+
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~----------------N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~   71 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLND----------------NELGRISSDGLFGRLPHLVKLELKRNQLTGIEP   71 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCS----------------CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCC----------------CCCcccccccccCCCceEeeeeccccccccccc
Confidence            4577888888888886653  3444444443                4443322 2334555555555555555  2333


Q ss_pred             cccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccc--cc--CCCCCCCCceEEEEEccccCC
Q 043839          229 DILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLME  303 (415)
Q Consensus       229 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~  303 (415)
                      ..+..+++|++|++++|  ......+..+..+++|+.|++++ |      ++  +|  ++..+ ++|++|++++|.+..
T Consensus        72 ~~~~~~~~L~~L~Ls~N--~l~~l~~~~F~~l~~L~~L~L~~-N------~l~~i~~~~f~~l-~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          72 NAFEGASHIQELQLGEN--KIKEISNKMFLGLHQLKTLNLYD-N------QISCVMPGSFEHL-NSLTSLNLASNPFNC  140 (192)
T ss_dssp             TTTTTCTTCCEEECCSC--CCCEECSSSSTTCTTCCEEECCS-S------CCCEECTTSSTTC-TTCCEEECTTCCBCC
T ss_pred             cccccccccceeeeccc--cccccCHHHHhCCCcccccccCC-c------cccccCHHHhcCC-ccccccccccccccc
Confidence            44555556666666655  23322233455556666666655 4      23  33  56666 777777777776543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=7.4e-11  Score=112.84  Aligned_cols=60  Identities=25%  Similarity=0.230  Sum_probs=41.7

Q ss_pred             CCcccEEEeccCCCcc-----ceEEcC-CCccCccEEEEecCcccC----CChhhhcCCCCCCeEEEecCC
Q 043839          326 FPLLKILHLKSMLWLE-----EWTMGA-GSMPKLESLILNPCAYLR----KLPEELWCIKNLCKLELHWPQ  386 (415)
Q Consensus       326 ~~~L~~L~l~~~~~l~-----~l~~~~-~~l~~L~~L~l~~c~~~~----~lp~~l~~l~~L~~L~l~~c~  386 (415)
                      .++|++|+|++| .++     .++..+ ...+.|++|++++|....    .++..+..+++|++|++++++
T Consensus       339 ~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~  408 (460)
T d1z7xw1         339 NRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  408 (460)
T ss_dssp             CSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             ccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCc
Confidence            457888888887 343     222222 246679999999997643    345567778999999999876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.94  E-value=8.2e-10  Score=93.18  Aligned_cols=119  Identities=13%  Similarity=0.086  Sum_probs=97.1

Q ss_pred             CcEEEecCCCCCCCCCCcccCccccceeccccCC-CC-C-ccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEE
Q 043839          191 LMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS-SC-T-PDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLK  267 (415)
Q Consensus       191 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~-~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~  267 (415)
                      .++++.+ +.....+|.++.  +++++|+++++. .. . +..++.+++|+.|+++++  ......+..+..+++|+.|+
T Consensus        10 ~~~v~Cs-~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N--~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          10 GTTVDCT-GRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN--QLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECT-TSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS--CCCCBCTTTTTTCTTCCEEE
T ss_pred             CCEEEEe-CCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccc--ccccccccccccccccceee
Confidence            4566766 444567888774  689999999998 33 3 455788999999999998  46666677888999999999


Q ss_pred             eecCccccccccc--cc--CCCCCCCCceEEEEEccccCCCCchhhcCCCCCCeEeecc
Q 043839          268 LVNEGKMWQFSRM--IL--SEYKFPPTLTQLSLSNTKLMEDPMPTLEKLPLLEVLKLKQ  322 (415)
Q Consensus       268 l~~~~~il~~l~L--lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  322 (415)
                      +++ |      ++  +|  .|..+ ++|++|+|++|.++...+..+..+++|++|++++
T Consensus        85 Ls~-N------~l~~l~~~~F~~l-~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          85 LGE-N------KIKEISNKMFLGL-HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCS-C------CCCEECSSSSTTC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             ecc-c------cccccCHHHHhCC-CcccccccCCccccccCHHHhcCCcccccccccc
Confidence            998 6      44  55  78899 9999999999999877778889999999999987

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.92  E-value=9.4e-11  Score=108.56  Aligned_cols=98  Identities=23%  Similarity=0.332  Sum_probs=60.8

Q ss_pred             CCceEEEEEccccCCCCc----hhhcCCCCCCeEeecc---------------CCCCCcccEEEeccCCCcc----ceEE
Q 043839          289 PTLTQLSLSNTKLMEDPM----PTLEKLPLLEVLKLKQ---------------NSSFPLLKILHLKSMLWLE----EWTM  345 (415)
Q Consensus       289 ~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~~---------------~~~~~~L~~L~l~~~~~l~----~l~~  345 (415)
                      +.|+.+.++++.+.....    ..+..++.|+.|++++               ...+++|+.|++++|..-.    .+..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            455555555554433221    2233455555555544               2346778888888884222    2444


Q ss_pred             cCCCccCccEEEEecCcccCC----ChhhhcC--CCCCCeEEEecCC
Q 043839          346 GAGSMPKLESLILNPCAYLRK----LPEELWC--IKNLCKLELHWPQ  386 (415)
Q Consensus       346 ~~~~l~~L~~L~l~~c~~~~~----lp~~l~~--l~~L~~L~l~~c~  386 (415)
                      .+..+++|++|++++|.....    +...+..  .++|++|++++|.
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            567899999999999986532    2334443  4689999999986

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.84  E-value=4.5e-11  Score=101.63  Aligned_cols=129  Identities=22%  Similarity=0.273  Sum_probs=66.8

Q ss_pred             CCccccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcEEEeecCccccccccccc-CCCCCCCCceEEEEEccccCCC
Q 043839          226 CTPDILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLECLKLVNEGKMWQFSRMIL-SEYKFPPTLTQLSLSNTKLMED  304 (415)
Q Consensus       226 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~il~~l~Llp-~~~~lp~~L~~L~l~~~~l~~~  304 (415)
                      .++..+..+++|++|+++++.   ...++ .+..+++|+.|++++ |.+-.    +| ....+ ++|+.|++++|.++. 
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~---I~~i~-~l~~l~~L~~L~Ls~-N~i~~----i~~~~~~~-~~L~~L~l~~N~i~~-  107 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNN---IEKIS-SLSGMENLRILSLGR-NLIKK----IENLDAVA-DTLEELWISYNQIAS-  107 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEE---ESCCC-CHHHHTTCCEEECCE-EEECS----CSSHHHHH-HHCCEEECSEEECCC-
T ss_pred             hhhhHHhcccccceeECcccC---CCCcc-cccCCccccChhhcc-ccccc----cccccccc-ccccccccccccccc-
Confidence            334445555566666665551   22222 344555555555554 21000    33 22222 445555555555431 


Q ss_pred             CchhhcCCCCCCeEeeccCCCCCcccEEEeccCCCccceE--EcCCCccCccEEEEecCcccCCChh----------hhc
Q 043839          305 PMPTLEKLPLLEVLKLKQNSSFPLLKILHLKSMLWLEEWT--MGAGSMPKLESLILNPCAYLRKLPE----------ELW  372 (415)
Q Consensus       305 ~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~~~~lp~----------~l~  372 (415)
                       .+.+.              .+++|++|++++| .++.++  ..+..+++|+.|++++|+.....+.          .+.
T Consensus       108 -l~~~~--------------~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~  171 (198)
T d1m9la_         108 -LSGIE--------------KLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             -HHHHH--------------HHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHH
T ss_pred             -ccccc--------------ccccccccccccc-hhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHH
Confidence             12222              3455666666776 555554  3467888888888888875432111          156


Q ss_pred             CCCCCCeEE
Q 043839          373 CIKNLCKLE  381 (415)
Q Consensus       373 ~l~~L~~L~  381 (415)
                      ++|+|+.||
T Consensus       172 ~lp~L~~LD  180 (198)
T d1m9la_         172 RLPNLKKLD  180 (198)
T ss_dssp             HCSSCCEES
T ss_pred             HCCCcCEeC
Confidence            688888876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.79  E-value=2.6e-10  Score=96.73  Aligned_cols=100  Identities=17%  Similarity=0.183  Sum_probs=60.8

Q ss_pred             HHHhccCCcccEEEcCCcccccCcccccCccCCceEecCc------ccc-cccccCcEEEecCCCCCCCCCCcccCcccc
Q 043839          143 ENFCKKFKHLRVLNLGSAVLDLYPPGLENLFHLKYLKLIT------PLL-KLMQKLMHLNFGSITMPSPPNNYSSSLKDL  215 (415)
Q Consensus       143 ~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~------~~i-~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L  215 (415)
                      +..+..+++|++|++++|.++.++ .+..+++|++|++++      +.+ ..+++|++|++++|.+. .+ +.+..+++|
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~-~l-~~~~~l~~L  117 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNL  117 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECC-CH-HHHHHHHHS
T ss_pred             hhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccccccc-cc-ccccccccc
Confidence            466888888888888888888775 477777777777776      111 22345666666644332 22 235556666


Q ss_pred             ceeccccCC-CCCc--cccCCCCCCCeEEEecc
Q 043839          216 IFISAVHPS-SCTP--DILGRLPNVQTLRISGD  245 (415)
Q Consensus       216 ~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~  245 (415)
                      ++|+++++. ..++  ..+..+++|+.|++++|
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             cccccccchhccccccccccCCCccceeecCCC
Confidence            666666655 3333  23556666666666655

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=3.8e-07  Score=73.51  Aligned_cols=93  Identities=13%  Similarity=-0.075  Sum_probs=53.6

Q ss_pred             cEEEcCCcccccCcccccCccCCceEecCc---------ccccccccCcEEEecCCCCCCCCCCcccCccccceeccccC
Q 043839          153 RVLNLGSAVLDLYPPGLENLFHLKYLKLIT---------PLLKLMQKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHP  223 (415)
Q Consensus       153 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~---------~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~  223 (415)
                      ..++.+++.+...|..+..+++|++|++++         ..+.++++|+.|++++|.+...-|..+..+++|++|+++++
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            345555555555555555555555555432         33455666666666644443333445677777777777777


Q ss_pred             C-CCCccccCCCCCCCeEEEecc
Q 043839          224 S-SCTPDILGRLPNVQTLRISGD  245 (415)
Q Consensus       224 ~-~~~~~~l~~l~~L~~L~l~~~  245 (415)
                      . ..++...-...+|+.|++++|
T Consensus        91 ~l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          91 ALESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSS
T ss_pred             CCcccChhhhccccccccccCCC
Confidence            7 666555444456777777766

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.2e-06  Score=70.39  Aligned_cols=79  Identities=11%  Similarity=-0.047  Sum_probs=43.0

Q ss_pred             ccCcEEEecCCCCCCCCCCcccCccccceeccccCC--CCCc-cccCCCCCCCeEEEecccCcchhcHHHhhhccCCCcE
Q 043839          189 QKLMHLNFGSITMPSPPNNYSSSLKDLIFISAVHPS--SCTP-DILGRLPNVQTLRISGDLSYHHSGVSKSLCELHKLEC  265 (415)
Q Consensus       189 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~  265 (415)
                      ...+.++.. +......|..+..+++|++|++.++.  ..++ ..+..+++|+.|++++|  .....-+..+..+++|+.
T Consensus         8 ~~~~~l~c~-~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N--~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           8 HGSSGLRCT-RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS--GLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             SSSSCEECC-SSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS--CCCEECTTGGGSCSCCCE
T ss_pred             CCCCeEEec-CCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc--ccCCcccccccccccccc
Confidence            334455555 33344556666667777777765543  3333 34666777777777766  232222334455555555


Q ss_pred             EEeec
Q 043839          266 LKLVN  270 (415)
Q Consensus       266 L~l~~  270 (415)
                      |++++
T Consensus        85 L~Ls~   89 (156)
T d2ifga3          85 LNLSF   89 (156)
T ss_dssp             EECCS
T ss_pred             eeccC
Confidence            55555

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=1.6e-05  Score=64.06  Aligned_cols=13  Identities=23%  Similarity=0.646  Sum_probs=6.4

Q ss_pred             CCCCCCeEEEecc
Q 043839          233 RLPNVQTLRISGD  245 (415)
Q Consensus       233 ~l~~L~~L~l~~~  245 (415)
                      .+++|++|++++|
T Consensus        63 ~~~~L~~L~Ls~N   75 (162)
T d1koha1          63 NIPELLSLNLSNN   75 (162)
T ss_dssp             HCTTCCCCCCCSS
T ss_pred             hCCCCCEeeCCCc
Confidence            3444555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=9.3e-05  Score=59.35  Aligned_cols=41  Identities=22%  Similarity=0.129  Sum_probs=29.2

Q ss_pred             hHHHhccCCcccEEEcCCcccccCc---ccccCccCCceEecCc
Q 043839          142 CENFCKKFKHLRVLNLGSAVLDLYP---PGLENLFHLKYLKLIT  182 (415)
Q Consensus       142 ~~~~~~~~~~L~~L~l~~~~~~~lp---~~i~~l~~L~~L~l~~  182 (415)
                      +...+.++++|++|++++|.++.++   ..+..+++|++|++++
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~  100 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG  100 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc
Confidence            3445678999999999999988554   3344566666666665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.78  E-value=0.00022  Score=57.42  Aligned_cols=116  Identities=5%  Similarity=-0.038  Sum_probs=63.3

Q ss_pred             HHHhccCCcccEEEcCCcc-cc-cCcccccCccCCceEecCcccccccccCcEEEecCCCCCC----CCCCcccCccccc
Q 043839          143 ENFCKKFKHLRVLNLGSAV-LD-LYPPGLENLFHLKYLKLITPLLKLMQKLMHLNFGSITMPS----PPNNYSSSLKDLI  216 (415)
Q Consensus       143 ~~~~~~~~~L~~L~l~~~~-~~-~lp~~i~~l~~L~~L~l~~~~i~~l~~L~~L~l~~~~~~~----~~p~~i~~l~~L~  216 (415)
                      .....+.+.|+.|+|++++ ++ ..-..+.            ..+...+.|++|++++|.+..    .+...+...+.|+
T Consensus         8 ~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~------------~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~   75 (167)
T d1pgva_           8 NRLREDDTDLKEVNINNMKRVSKERIRSLI------------EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLR   75 (167)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHH------------HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCC
T ss_pred             HHHHhCCCCCcEEEeCCCCCCCHHHHHHHH------------HHHhhCCccceeeccccccchhHHHHHhhhhhhccccc
Confidence            4455677889999998753 54 1111111            223334455555555444322    1222234456677


Q ss_pred             eeccccCC------CCCccccCCCCCCCeEEEecccCcc-----hhcHHHhhhccCCCcEEEeec
Q 043839          217 FISAVHPS------SCTPDILGRLPNVQTLRISGDLSYH-----HSGVSKSLCELHKLECLKLVN  270 (415)
Q Consensus       217 ~L~l~~~~------~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~l~~L~~L~l~~  270 (415)
                      +|++.+|.      ..+...+...+.|++|++.++....     ...+...+...++|+.|+++.
T Consensus        76 ~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          76 VLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             EEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             ceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence            77776665      2344456667778888887653111     223455566667777776655

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.38  E-value=0.00087  Score=53.69  Aligned_cols=15  Identities=0%  Similarity=0.149  Sum_probs=6.8

Q ss_pred             cCCCCCCCeEEEecc
Q 043839          231 LGRLPNVQTLRISGD  245 (415)
Q Consensus       231 l~~l~~L~~L~l~~~  245 (415)
                      +...+.|++|++++|
T Consensus        40 L~~n~~L~~L~Ls~n   54 (167)
T d1pgva_          40 ACNSKHIEKFSLANT   54 (167)
T ss_dssp             HTTCSCCCEEECTTS
T ss_pred             HhhCCccceeecccc
Confidence            334444444444444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.32  E-value=0.00028  Score=56.65  Aligned_cols=43  Identities=14%  Similarity=0.028  Sum_probs=22.8

Q ss_pred             ccccCCCCCCCeEEEecccCcc----hhcHHHhhhccCCCcEEEeec
Q 043839          228 PDILGRLPNVQTLRISGDLSYH----HSGVSKSLCELHKLECLKLVN  270 (415)
Q Consensus       228 ~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~l~~l~~L~~L~l~~  270 (415)
                      ...+...++|+.+++..+....    ...+...+...++|+.|++++
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            3445556666665554332111    123455566667777777665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.01  E-value=0.00064  Score=54.38  Aligned_cols=105  Identities=15%  Similarity=0.104  Sum_probs=57.3

Q ss_pred             chHHHhccCCcccEEEcCCc-ccc-----cCcccccCccCCceEecCc------------ccccccccCcEEEecCCCCC
Q 043839          141 DCENFCKKFKHLRVLNLGSA-VLD-----LYPPGLENLFHLKYLKLIT------------PLLKLMQKLMHLNFGSITMP  202 (415)
Q Consensus       141 ~~~~~~~~~~~L~~L~l~~~-~~~-----~lp~~i~~l~~L~~L~l~~------------~~i~~l~~L~~L~l~~~~~~  202 (415)
                      .......+.+.|++|+++++ .++     .+-..+...++|+.|++++            ..+...+.++.+++.++...
T Consensus         8 ~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_           8 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            34555677788999999874 354     2334445566677777766            33444566666666644332


Q ss_pred             CC----CCCcccCccccceeccccCC--------CCCccccCCCCCCCeEEEecc
Q 043839          203 SP----PNNYSSSLKDLIFISAVHPS--------SCTPDILGRLPNVQTLRISGD  245 (415)
Q Consensus       203 ~~----~p~~i~~l~~L~~L~l~~~~--------~~~~~~l~~l~~L~~L~l~~~  245 (415)
                      ..    +...+...++|+.+++..+.        ..+...+...++|++|++..+
T Consensus        88 ~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          88 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             chhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            21    22334445556554443322        223344455666666666554