Citrus Sinensis ID: 043870
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 526 | 2.2.26 [Sep-21-2011] | |||||||
| P55230 | 518 | Glucose-1-phosphate adeny | yes | no | 0.923 | 0.938 | 0.716 | 0.0 | |
| P55233 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.863 | 0.869 | 0.729 | 0.0 | |
| P55242 | 519 | Glucose-1-phosphate adeny | N/A | no | 0.865 | 0.876 | 0.727 | 0.0 | |
| P55231 | 521 | Glucose-1-phosphate adeny | no | no | 0.901 | 0.909 | 0.671 | 0.0 | |
| Q00081 | 470 | Glucose-1-phosphate adeny | N/A | no | 0.846 | 0.946 | 0.706 | 0.0 | |
| P55229 | 522 | Glucose-1-phosphate adeny | no | no | 0.927 | 0.934 | 0.660 | 0.0 | |
| Q9SIK1 | 523 | Probable glucose-1-phosph | no | no | 0.986 | 0.992 | 0.630 | 0.0 | |
| P55243 | 483 | Glucose-1-phosphate adeny | N/A | no | 0.840 | 0.915 | 0.681 | 0.0 | |
| P30524 | 523 | Glucose-1-phosphate adeny | N/A | no | 0.840 | 0.845 | 0.642 | 0.0 | |
| P12299 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.840 | 0.846 | 0.640 | 0.0 |
| >sp|P55230|GLGL2_ARATH Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/494 (71%), Positives = 419/494 (84%), Gaps = 8/494 (1%)
Query: 39 SSVSGVQLGKFNIPRKTR---ATSKRFS---VRSILADVAKDYMTFQAPVFEKPEADPKA 92
S+ G Q+ K N R T+ A K+ +RS+L P+ ADPK
Sbjct: 27 SAFWGTQVVKPNHLRTTKLRSAPQKKIQTNLIRSVLTPFVDQES--HEPLLRTQNADPKN 84
Query: 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQS 152
VASIILGGGAGTRLFPLT +RAKPAVPIGGCYRLID+PMSNCINSGI+KI+ILTQFNS S
Sbjct: 85 VASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFS 144
Query: 153 LNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRN 212
LNRH+SRTYN G+G+NFGDGFVEVLAATQ G++GKKWFQGTADAVRQFIW+FEDAK +N
Sbjct: 145 LNRHLSRTYNFGNGVNFGDGFVEVLAATQTSGDAGKKWFQGTADAVRQFIWVFEDAKTKN 204
Query: 213 IENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQF 272
+E++LILSGDHLYRMDYM+FVQ HI S DI+V CLP+DESRASDFGL+KID++G+I QF
Sbjct: 205 VEHVLILSGDHLYRMDYMNFVQKHIESNADITVSCLPMDESRASDFGLLKIDQSGKIIQF 264
Query: 273 LEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFG 332
EKPKG++L++MQ+DT+ LGL +EA PYIASMG+Y+F+ EVLLK+LR YP +NDFG
Sbjct: 265 SEKPKGDDLKAMQVDTSILGLPPKEAAESPYIASMGVYVFRKEVLLKLLRSSYPTSNDFG 324
Query: 333 SEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRF 392
SE+IP+A + NVQA+LFNDYWEDIGTI SFFDANL+LT++PPKF FYD + P FTSPRF
Sbjct: 325 SEIIPLAVGEHNVQAFLFNDYWEDIGTIGSFFDANLALTEQPPKFQFYDQKTPFFTSPRF 384
Query: 393 LPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAE 452
LPP+K++KCR+ DSI+SHGCFLRECSV+HSIVGIRSRLE GVEL+DTMMMGAD+YQTEAE
Sbjct: 385 LPPTKVDKCRILDSIVSHGCFLRECSVQHSIVGIRSRLESGVELQDTMMMGADFYQTEAE 444
Query: 453 IAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT 512
IA+LLAEGKVPVG+G++TKIKNCIIDKNAKIGKNV+IAN DGVEE +RP +GF+IRSGIT
Sbjct: 445 IASLLAEGKVPVGVGQNTKIKNCIIDKNAKIGKNVVIANADGVEEGDRPEEGFHIRSGIT 504
Query: 513 VVLKNTTIKDGTII 526
VVLKN TI+DG I
Sbjct: 505 VVLKNATIRDGLHI 518
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 2EC: 7 |
| >sp|P55233|GLGL1_BETVU Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/454 (72%), Positives = 402/454 (88%)
Query: 73 KDYMTFQAPVFEKPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMS 132
K+ + ++ +FE P+ADPK VA+I+LGGGAGTRLFPLT RRAKPAVPIGGCYRLIDVPMS
Sbjct: 69 KESLKYEPALFESPKADPKNVAAIVLGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDVPMS 128
Query: 133 NCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQ 192
NCINSGI+KI+ILTQFNS SLNRH++RTYN GDG+NFGDGFVEV AATQ GESGKKWFQ
Sbjct: 129 NCINSGIRKIFILTQFNSFSLNRHLARTYNFGDGVNFGDGFVEVFAATQTPGESGKKWFQ 188
Query: 193 GTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDE 252
GTADAVRQF W FED+K +++E+I+ILSGDHLYRMDYM F Q HI++ DI+V C+P+D+
Sbjct: 189 GTADAVRQFFWAFEDSKSKDVEHIVILSGDHLYRMDYMSFWQKHIDTNADITVSCIPMDD 248
Query: 253 SRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLF 312
SRASD+GLMKID TGRI F EKPKG +L +MQ+DTT LGLS EA + PYIASMG+Y+F
Sbjct: 249 SRASDYGLMKIDHTGRIVHFAEKPKGSDLTAMQVDTTVLGLSDLEAMSNPYIASMGVYVF 308
Query: 313 KTEVLLKVLRWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372
+T+VL+++L YP +NDFGSE+IP A + NVQAYLFNDYWEDIGTIKSFFD+NL+LT
Sbjct: 309 RTDVLMELLNRKYPSSNDFGSEIIPSAVGESNVQAYLFNDYWEDIGTIKSFFDSNLALTQ 368
Query: 373 KPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEY 432
+PPKF FYDP+ P +TS RFLPP+K+++C++ DSI+SHGCFL+E S++HSIVG+RSRLE
Sbjct: 369 QPPKFEFYDPKTPFYTSARFLPPTKVDRCKIVDSIVSHGCFLQESSIQHSIVGVRSRLES 428
Query: 433 GVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANK 492
GVE +DTMMMGADYYQTE+EIA+LLAEGKVPVG+G++TKIKNCIIDKNAKIGK+V+IAN
Sbjct: 429 GVEFQDTMMMGADYYQTESEIASLLAEGKVPVGVGQNTKIKNCIIDKNAKIGKDVVIANT 488
Query: 493 DGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526
DGVEEA+RP++GFYIRSGIT++LKN TI+DG +I
Sbjct: 489 DGVEEADRPNEGFYIRSGITIILKNATIQDGLVI 522
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Beta vulgaris (taxid: 161934) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55242|GLGL2_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/458 (72%), Positives = 401/458 (87%), Gaps = 3/458 (0%)
Query: 70 DVAKDYMTFQAPVFE-KPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLID 128
D+ K+ + F+ +FE +P ADPKAVAS+ILGGG GTRLFPLT RRAKPAVPIGGCYRLID
Sbjct: 64 DINKEMLPFEESMFEEQPTADPKAVASVILGGGVGTRLFPLTSRRAKPAVPIGGCYRLID 123
Query: 129 VPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGK 188
VPMSNCINSGI+KI+ILTQFNS SLNRH++ TYN G+G+ FGDGFVEVLA TQ G+ K
Sbjct: 124 VPMSNCINSGIRKIFILTQFNSFSLNRHLA-TYNFGNGVGFGDGFVEVLAGTQTPGDGRK 182
Query: 189 KWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCL 248
WFQ ADAVR+FIW+FE+ K++N+E+I+ILSGDHLYRM+YMDFVQ HI++ DI+V C+
Sbjct: 183 MWFQA-ADAVREFIWVFENQKNKNVEHIIILSGDHLYRMNYMDFVQKHIDTNADITVSCV 241
Query: 249 PVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMG 308
P+D+ RASDFGLMKIDETG I QF EKPKG L++MQ+DT+ LGLS QEA NFPYIASMG
Sbjct: 242 PMDDGRASDFGLMKIDETGAIIQFAEKPKGPALKAMQVDTSILGLSEQEASNFPYIASMG 301
Query: 309 IYLFKTEVLLKVLRWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANL 368
+Y+FKT+VLL +L+ YP NDFGSE+IP A KD NVQAYLFNDYWEDIGT+KSFFDANL
Sbjct: 302 VYVFKTDVLLNLLKSAYPSCNDFGSEIIPSAVKDHNVQAYLFNDYWEDIGTVKSFFDANL 361
Query: 369 SLTDKPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRS 428
+LT +PPKF F DP+ P +TS RFLPP+K++K R+ D+IISHGCFLREC+++HSIVG+RS
Sbjct: 362 ALTKQPPKFDFNDPKTPFYTSARFLPPTKVDKSRIVDAIISHGCFLRECNIQHSIVGVRS 421
Query: 429 RLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVI 488
RL+YGVE KDTMMMGADYYQTE EIA+LLAEGKVP+G+G +TKI+NCIIDKNAKIGK+V+
Sbjct: 422 RLDYGVEFKDTMMMGADYYQTECEIASLLAEGKVPIGVGPNTKIQNCIIDKNAKIGKDVV 481
Query: 489 IANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526
I NK+GVEEA+R ++GFYIRSGITV++KN TIKDGT+I
Sbjct: 482 ILNKEGVEEADRSAEGFYIRSGITVIMKNATIKDGTVI 519
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55231|GLGL3_ARATH Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/484 (67%), Positives = 397/484 (82%), Gaps = 10/484 (2%)
Query: 52 PRKTRATSKRFSVRSILADVA---------KDYMTFQAPVFEKPEADPKAVASIILGGGA 102
P + +SK+F R + VA K+ + Q +FE+ ADPK VA+IILGGG
Sbjct: 39 PFSSDLSSKKFRNRKLRPGVAYAIATSKNAKEALKNQPSMFERRRADPKNVAAIILGGGD 98
Query: 103 GTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYN 162
G +LFPLT R A PAVP+GGCYR+ID+PMSNCINS I KI++LTQFNS SLNRH++RTY
Sbjct: 99 GAKLFPLTKRAATPAVPVGGCYRMIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTY- 157
Query: 163 LGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGD 222
G+G+NFGDGFVEVLAATQ GE+GKKWFQGTADAVR+F+W+FEDAK+RNIENI+ILSGD
Sbjct: 158 FGNGINFGDGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENIIILSGD 217
Query: 223 HLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLR 282
HLYRM+YMDFVQHH++S DI++ C PVDESRAS++GL+ ID +GR+ F EKP G +L+
Sbjct: 218 HLYRMNYMDFVQHHVDSKADITLSCAPVDESRASEYGLVNIDRSGRVVHFSEKPTGIDLK 277
Query: 283 SMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSEVIPMATKD 342
SMQ DTT GLS QEA PYIASMG+Y FKTE LLK+L W YP +NDFGSE+IP A KD
Sbjct: 278 SMQTDTTMHGLSHQEAAKSPYIASMGVYCFKTEALLKLLTWRYPSSNDFGSEIIPAAIKD 337
Query: 343 FNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKIEKCR 402
NVQ Y++ DYWEDIGTIKSF++AN++L ++ PKF FYD P +TSPRFLPP+K EKCR
Sbjct: 338 HNVQGYIYRDYWEDIGTIKSFYEANIALVEEHPKFEFYDQNTPFYTSPRFLPPTKTEKCR 397
Query: 403 VQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKV 462
+ +S+ISHGCFL ECS++ SI+G RSRL+YGVEL+DT+M+GAD YQTE+EIA+LLAEG V
Sbjct: 398 IVNSVISHGCFLGECSIQRSIIGERSRLDYGVELQDTLMLGADSYQTESEIASLLAEGNV 457
Query: 463 PVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKD 522
P+GIGRDTKI+ CIIDKNAKIGKNV+I NKD V+EA+RP +GFYIRSGITVV++ TIKD
Sbjct: 458 PIGIGRDTKIRKCIIDKNAKIGKNVVIMNKDDVKEADRPEEGFYIRSGITVVVEKATIKD 517
Query: 523 GTII 526
GT+I
Sbjct: 518 GTVI 521
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/446 (70%), Positives = 390/446 (87%), Gaps = 1/446 (0%)
Query: 81 PVFEKPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIK 140
P E+ A+PK VA++ILGGG GT+LFPLT R A PAVP+GGCYRLID+PMSNCINS I
Sbjct: 26 PRLERRRANPKDVAAVILGGGEGTKLFPLTSRTATPAVPVGGCYRLIDIPMSNCINSAIN 85
Query: 141 KIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQ 200
KI++LTQ+NS LNRHI+RTY G+G++FGDGFVEVLAATQ GE+GKKWFQGTADAVR+
Sbjct: 86 KIFVLTQYNSAPLNRHIARTY-FGNGVSFGDGFVEVLAATQTPGEAGKKWFQGTADAVRK 144
Query: 201 FIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGL 260
FIW+FEDAK++NIENI++LSGDHLYRMDYM+ VQ+HI+ DI++ C P ++SRASDFGL
Sbjct: 145 FIWVFEDAKNKNIENIVVLSGDHLYRMDYMELVQNHIDRNADITLSCAPAEDSRASDFGL 204
Query: 261 MKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKV 320
+KID GR+ QF EKPKG +L++MQ+DTT +GLS Q+A+ PYIASMG+Y+FKT+VLLK+
Sbjct: 205 VKIDSRGRVVQFAEKPKGFDLKAMQVDTTLVGLSPQDAKKSPYIASMGVYVFKTDVLLKL 264
Query: 321 LRWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFY 380
L+W YP +NDFGSE+IP A D+NVQAY+F DYWEDIGTIKSF++A+L+LT + P+F FY
Sbjct: 265 LKWSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWEDIGTIKSFYNASLALTQEFPEFQFY 324
Query: 381 DPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTM 440
DP+ P +TSPRFLPP+KI+ C+++D+IISHGCFLR+CSVEHSIVG RSRL+ GVELKDT
Sbjct: 325 DPKTPFYTSPRFLPPTKIDNCKIKDAIISHGCFLRDCSVEHSIVGERSRLDCGVELKDTF 384
Query: 441 MMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAER 500
MMGADYYQTE+EIA+LLAEGKVP+GIG +TKI+ CIIDKNAKIGKNV I NKDGV+EA+R
Sbjct: 385 MMGADYYQTESEIASLLAEGKVPIGIGENTKIRKCIIDKNAKIGKNVSIINKDGVQEADR 444
Query: 501 PSDGFYIRSGITVVLKNTTIKDGTII 526
P +GFYIRSGI ++L+ TI+DGT+I
Sbjct: 445 PEEGFYIRSGIIIILEKATIRDGTVI 470
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55229|GLGL1_ARATH Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/489 (66%), Positives = 394/489 (80%), Gaps = 1/489 (0%)
Query: 38 NSSVSGVQLGKFNIPRKTRATSKRFSVRSILADVAKDYMTFQAPVFEKPEADPKAVASII 97
N + G +L +P +S FS + IL + + E + DP+ VASII
Sbjct: 35 NGELMGKKLNLSQLPNIRLRSSTNFSQKRILMSLNSVAGESKVQELETEKRDPRTVASII 94
Query: 98 LGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHI 157
LGGGAGTRLFPLT RRAKPAVPIGG YRLIDVPMSNCINSGI K+YILTQ+NS SLNRH+
Sbjct: 95 LGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHL 154
Query: 158 SRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENIL 217
+R YN +G+ FGDG+VEVLAATQ GESGK+WFQGTADAVRQF W+FEDA+ ++IE++L
Sbjct: 155 ARAYN-SNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHWLFEDARSKDIEDVL 213
Query: 218 ILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEKPK 277
ILSGDHLYRMDYMDF+Q H SG DIS+ C+P+D+ RASDFGLMKID+ GR+ F EKPK
Sbjct: 214 ILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKIDDKGRVISFSEKPK 273
Query: 278 GENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSEVIP 337
G++L++M +DTT LGLS +EA PYIASMG+Y+FK E+LL +LRW +P ANDFGSE+IP
Sbjct: 274 GDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEIIP 333
Query: 338 MATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSK 397
+ K+F V AYLFNDYWEDIGTI+SFF+ANL+LT+ P F FYD KPI+TS R LPPSK
Sbjct: 334 FSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAAKPIYTSRRNLPPSK 393
Query: 398 IEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALL 457
I+ ++ DSIISHG FL C +EHSIVGIRSR+ V+LKDT+M+GADYY+TEAE+AALL
Sbjct: 394 IDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLGADYYETEAEVAALL 453
Query: 458 AEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKN 517
AEG VP+GIG +TKI+ CIIDKNA++GKNVIIAN +G++EA+R SDGFYIRSGITV+LKN
Sbjct: 454 AEGNVPIGIGENTKIQECIIDKNARVGKNVIIANSEGIQEADRSSDGFYIRSGITVILKN 513
Query: 518 TTIKDGTII 526
+ IKDG +I
Sbjct: 514 SVIKDGVVI 522
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|Q9SIK1|GLGL4_ARATH Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/522 (63%), Positives = 403/522 (77%), Gaps = 3/522 (0%)
Query: 7 SSISSGMPQQERLLPTSSFSGIRVSTATGQPNSSVSGVQLGKFNIPRKTRATSKRFSVRS 66
SS S + +LP SF + + N++ + G +K R + V
Sbjct: 3 SSYSFALGTSSSILPKLSFRNVENRFYGEKNNNNGLCKRFGSDLGSKKFRNQKFKHGVVY 62
Query: 67 ILA--DVAKDYMTFQAPVFEKPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCY 124
+A D K MT + +FE+ + DP+ VA+IILGGG G +LFPLT R A PAVP+GGCY
Sbjct: 63 AVATSDNPKKAMTVKTSMFERRKVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCY 122
Query: 125 RLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQG 184
RLID+PMSNCINS I KI++LTQFNS SLNRH++RTY G VEVLAATQ G
Sbjct: 123 RLIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTYFGNGINFGGGF-VEVLAATQTPG 181
Query: 185 ESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDIS 244
E+GKKWFQGTADAVR+F+W+FEDAK+RNIENILILSGDHLYRM+YMDFVQ H++S DI+
Sbjct: 182 EAGKKWFQGTADAVRKFLWVFEDAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADIT 241
Query: 245 VCCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYI 304
+ C PV ESRAS+FGL+KID GR+ F EKP G +L+SMQ DTT LGLS QEA + PYI
Sbjct: 242 LSCAPVSESRASNFGLVKIDRGGRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYI 301
Query: 305 ASMGIYLFKTEVLLKVLRWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFF 364
ASMG+Y FKTE LL +L YP +NDFGSEVIP A +D +VQ Y+F DYWEDIGTIK+F+
Sbjct: 302 ASMGVYCFKTEALLNLLTRQYPSSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFY 361
Query: 365 DANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIV 424
+ANL+L ++ PKF FYDP+ P +TSPRFLPP+K EKCR+ DSIISHGCFLRECSV+ SI+
Sbjct: 362 EANLALVEERPKFEFYDPETPFYTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSII 421
Query: 425 GIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIG 484
G RSRL+YGVEL+DT+M+GADYYQTE+EIA+LLAEGKVP+GIG+DTKI+ CIIDKNAKIG
Sbjct: 422 GERSRLDYGVELQDTLMLGADYYQTESEIASLLAEGKVPIGIGKDTKIRKCIIDKNAKIG 481
Query: 485 KNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526
KNVII NK V+EA+RP +GFYIRSGITV+++ TI+DGT+I
Sbjct: 482 KNVIIMNKGDVQEADRPEEGFYIRSGITVIVEKATIQDGTVI 523
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55243|GLGL3_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/443 (68%), Positives = 374/443 (84%), Gaps = 1/443 (0%)
Query: 85 KPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYI 144
+ + D + V +IILGGGAGTRLFPLT RRAKPAVP+GG YRLIDVPMSNCINSGI K+YI
Sbjct: 41 QKKGDARTVVAIILGGGAGTRLFPLTKRRAKPAVPMGGAYRLIDVPMSNCINSGINKVYI 100
Query: 145 LTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWM 204
LTQFNS SLNRHI+R YN G+G+ F G+VEVLAATQ GE GK+WFQGTA AVRQF W+
Sbjct: 101 LTQFNSASLNRHIARAYNFGNGVTFESGYVEVLAATQTPGELGKRWFQGTAHAVRQFHWL 160
Query: 205 FEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKID 264
FEDA+ ++IE++LILSGDHLYRMDY+ FVQ H SG DI++ LP+D+SRASDFGLMKID
Sbjct: 161 FEDARSKDIEDVLILSGDHLYRMDYLHFVQSHRQSGADITISSLPIDDSRASDFGLMKID 220
Query: 265 ETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMG-IYLFKTEVLLKVLRW 323
+TGR+ F EKPKG++L++M +DTT LGLS +EA+ PYIAS+G +Y+FK ++LL +LRW
Sbjct: 221 DTGRVMSFSEKPKGDDLKAMAVDTTVLGLSPEEAKEKPYIASIGKVYVFKKDILLNLLRW 280
Query: 324 HYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQ 383
+P ANDFGSE+IP +TK+F V+AYLFNDYWEDIGTI+SFF ANL+LT+ PP+F FYD
Sbjct: 281 RFPTANDFGSEIIPASTKEFCVKAYLFNDYWEDIGTIRSFFRANLALTEHPPRFSFYDAT 340
Query: 384 KPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMG 443
KPI+TS R LPPS I+ ++ DSI+SHG FL C VEHS+VGIRSR+ V LKDT+M+G
Sbjct: 341 KPIYTSRRNLPPSAIDNSKIVDSIVSHGIFLTNCFVEHSVVGIRSRIGTNVHLKDTVMLG 400
Query: 444 ADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSD 503
ADYY+T+AEI + LAEGKVP+GIG +T+IK+CIIDKNA+IGKNV+IAN +GV+EA+R S+
Sbjct: 401 ADYYETDAEIRSQLAEGKVPLGIGENTRIKDCIIDKNARIGKNVVIANSEGVQEADRSSE 460
Query: 504 GFYIRSGITVVLKNTTIKDGTII 526
GFY+ SGITV+ KN+TI DGT+I
Sbjct: 461 GFYMASGITVISKNSTIPDGTVI 483
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P30524|GLGL1_HORVU Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=2 | Back alignment and function description |
|---|
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 286/445 (64%), Positives = 367/445 (82%), Gaps = 3/445 (0%)
Query: 83 FEKPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKI 142
F + ADP VA++ILGGG GT+LFPLT RA PAVPIGGCYRLID+PMSNC NSGI KI
Sbjct: 81 FRRNYADPNEVAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKI 140
Query: 143 YILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFI 202
+++TQFNS SLNRHI RTY LG G+NF DG VEVLAATQ GE+ WF+GTADAVR+FI
Sbjct: 141 FVMTQFNSASLNRHIHRTY-LGGGINFTDGSVEVLAATQMPGEAAG-WFRGTADAVRKFI 198
Query: 203 WMFEDA-KHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLM 261
W+ ED KH++IE+ILILSGD LYRMDYM+ VQ H++ DI++ C PV ESRAS++GL+
Sbjct: 199 WVLEDYYKHKSIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGESRASEYGLV 258
Query: 262 KIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVL 321
K D +GR+ QF EKPKG++L +M++DT+ L + + +PYIASMG+Y+FK +VLL +L
Sbjct: 259 KFDSSGRVIQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKYPYIASMGVYVFKRDVLLNLL 318
Query: 322 RWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYD 381
+ Y E +DFGSE++P A D NVQAY+F DYWEDIGTI+SFFDAN++L ++PPKF FYD
Sbjct: 319 KSRYAELHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIRSFFDANMALCEQPPKFEFYD 378
Query: 382 PQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMM 441
P+ P FTSPR+LPP+K +KCR++++IISHGCFLREC +EHSI+G+RSRL G ELK+ MM
Sbjct: 379 PKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEHSIIGVRSRLNSGSELKNAMM 438
Query: 442 MGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERP 501
MGAD Y+TE EI+ L++EGKVP+G+G +TKI NCIID NA+IG++V+I+NK+GV+EA+RP
Sbjct: 439 MGADSYETEDEISRLMSEGKVPIGVGENTKISNCIIDMNARIGRDVVISNKEGVQEADRP 498
Query: 502 SDGFYIRSGITVVLKNTTIKDGTII 526
+G+YIRSGI V+ KN TIKDGT++
Sbjct: 499 EEGYYIRSGIVVIQKNATIKDGTVV 523
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P12299|GLGL2_WHEAT Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2 | Back alignment and function description |
|---|
Score = 634 bits (1634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 285/445 (64%), Positives = 367/445 (82%), Gaps = 3/445 (0%)
Query: 83 FEKPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKI 142
F + ADP VA++ILGGG GT+LFPLT RA PAVPIGGCYRLID+PMSNC NSGI KI
Sbjct: 80 FRRNYADPNEVAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKI 139
Query: 143 YILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFI 202
+++TQFNS SLNRHI RTY LG G+NF DG VEVLAATQ GE+ WF+GTADAVR+FI
Sbjct: 140 FVMTQFNSASLNRHIHRTY-LGGGINFTDGSVEVLAATQMPGEAAG-WFRGTADAVRKFI 197
Query: 203 WMFEDA-KHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLM 261
W+ ED K+++IE+ILILSGD LYRMDYM+ VQ H++ DI++ C PV ESRAS++GL+
Sbjct: 198 WVLEDYYKNKSIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGESRASEYGLV 257
Query: 262 KIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVL 321
K D +GR+ QF EKPKG++L +M++DT+ L + + +PYIASMG+Y+FK +VLL +L
Sbjct: 258 KFDSSGRVVQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKYPYIASMGVYVFKRDVLLNLL 317
Query: 322 RWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYD 381
+ Y E +DFGSE++P A D NVQAY+F DYWEDIGTI+SFFDAN++L ++PPKF FYD
Sbjct: 318 KSRYAELHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIRSFFDANMALCEQPPKFEFYD 377
Query: 382 PQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMM 441
P+ P FTSPR+LPP+K +KCR++++IISHGCFLREC +EHSI+G+RSRL G ELK+ MM
Sbjct: 378 PKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEHSIIGVRSRLNSGSELKNAMM 437
Query: 442 MGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERP 501
MGAD Y+TE EI+ L++EGKVP+G+G +TKI NCIID NA+IG++V+I+NK+GV+EA+RP
Sbjct: 438 MGADSYETEDEISRLMSEGKVPIGVGENTKISNCIIDMNARIGRDVVISNKEGVQEADRP 497
Query: 502 SDGFYIRSGITVVLKNTTIKDGTII 526
+G+YIRSGI V+ KN TIKDGT++
Sbjct: 498 EEGYYIRSGIVVIQKNATIKDGTVV 522
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 526 | ||||||
| 255548169 | 528 | glucose-1-phosphate adenylyltransferase, | 0.935 | 0.931 | 0.808 | 0.0 | |
| 359479997 | 514 | PREDICTED: glucose-1-phosphate adenylylt | 0.914 | 0.935 | 0.811 | 0.0 | |
| 224128113 | 445 | predicted protein [Populus trichocarpa] | 0.846 | 1.0 | 0.853 | 0.0 | |
| 147818953 | 452 | hypothetical protein VITISV_040166 [Viti | 0.855 | 0.995 | 0.848 | 0.0 | |
| 297744104 | 476 | unnamed protein product [Vitis vinifera] | 0.855 | 0.945 | 0.817 | 0.0 | |
| 359357900 | 536 | ADP-glucose pyrophosphorylase 2 [Spirode | 0.882 | 0.865 | 0.788 | 0.0 | |
| 2642640 | 481 | ADP-glucose pyrophosphorylase large subu | 0.903 | 0.987 | 0.743 | 0.0 | |
| 356571037 | 528 | PREDICTED: glucose-1-phosphate adenylylt | 0.965 | 0.962 | 0.740 | 0.0 | |
| 224085694 | 475 | predicted protein [Populus trichocarpa] | 0.874 | 0.968 | 0.769 | 0.0 | |
| 449460245 | 532 | PREDICTED: glucose-1-phosphate adenylylt | 0.874 | 0.864 | 0.758 | 0.0 |
| >gi|255548169|ref|XP_002515141.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] gi|223545621|gb|EEF47125.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/492 (80%), Positives = 448/492 (91%)
Query: 35 GQPNSSVSGVQLGKFNIPRKTRATSKRFSVRSILADVAKDYMTFQAPVFEKPEADPKAVA 94
G ++SVS QLGK N PRK T+ RF S+LADVAKD+ FQA V K EADPK VA
Sbjct: 37 GHSHTSVSSFQLGKINFPRKMCKTTTRFLTTSVLADVAKDFTNFQATVLRKQEADPKTVA 96
Query: 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLN 154
SIILGGGAGTRLFPLT RAKPAVPIGGCYRLIDVPMSNCINSGI KIYILTQFNSQSLN
Sbjct: 97 SIILGGGAGTRLFPLTRTRAKPAVPIGGCYRLIDVPMSNCINSGINKIYILTQFNSQSLN 156
Query: 155 RHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIE 214
RHI+RTYN G+G+NFGDGFVEVLAATQ GESGKKWFQGTADAVRQF+W+FEDAKH +IE
Sbjct: 157 RHIARTYNSGNGVNFGDGFVEVLAATQTPGESGKKWFQGTADAVRQFLWLFEDAKHSHIE 216
Query: 215 NILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLE 274
NILILSGDHLYRMDYMDF+Q HI+SG DI+V CLPVDESRASDFGL+KIDETG+IRQFLE
Sbjct: 217 NILILSGDHLYRMDYMDFLQKHIDSGADITVSCLPVDESRASDFGLIKIDETGQIRQFLE 276
Query: 275 KPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSE 334
KPKGE+L+SM++DT+ LGLS +AR PYIASMGIY+FKT+VLLK+LRWHYP ANDFGSE
Sbjct: 277 KPKGESLKSMRVDTSTLGLSISDARKLPYIASMGIYMFKTDVLLKLLRWHYPTANDFGSE 336
Query: 335 VIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLP 394
+IP++ KD+NV+AYLFNDYWEDIGTIKSFFD+NL+LTD+PP+F F+DP KPIFTSPRFLP
Sbjct: 337 IIPLSAKDYNVRAYLFNDYWEDIGTIKSFFDSNLALTDQPPEFQFFDPLKPIFTSPRFLP 396
Query: 395 PSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIA 454
P+KIE+C+V+DSIISHGCFLRECSVEHSIVG+RSRLEYGVELKDTMMMGADYYQTEAE+A
Sbjct: 397 PTKIERCQVKDSIISHGCFLRECSVEHSIVGVRSRLEYGVELKDTMMMGADYYQTEAEVA 456
Query: 455 ALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVV 514
A LA GKVP+G+G++TKI NCIIDKNA+IGKNV+IANKD VEEA+RPS+GFYIRSGITVV
Sbjct: 457 ASLAGGKVPIGVGQETKIMNCIIDKNARIGKNVVIANKDHVEEADRPSEGFYIRSGITVV 516
Query: 515 LKNTTIKDGTII 526
LKN+ IKDGTII
Sbjct: 517 LKNSEIKDGTII 528
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479997|ref|XP_002274245.2| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/489 (81%), Positives = 433/489 (88%), Gaps = 8/489 (1%)
Query: 38 NSSVSGVQLGKFNIPRKTRATSKRFSVRSILADVAKDYMTFQAPVFEKPEADPKAVASII 97
NS +SG NI T+ +S +LADV KD+MT AP KPEADPK VASII
Sbjct: 34 NSRISG----NLNIWAPTKGSS----AACLLADVYKDFMTLDAPELAKPEADPKTVASII 85
Query: 98 LGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHI 157
LGGGAGTRLFPLT RAKPAVPIGGCYRLIDVPMSNCINSGI KIYILTQFNSQSLNRHI
Sbjct: 86 LGGGAGTRLFPLTKSRAKPAVPIGGCYRLIDVPMSNCINSGINKIYILTQFNSQSLNRHI 145
Query: 158 SRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENIL 217
+RTYNLG G+NFGDGFVEVLAATQ GESGKKWFQGTADAVRQFIW+FEDA+HR+IENIL
Sbjct: 146 ARTYNLGSGVNFGDGFVEVLAATQTSGESGKKWFQGTADAVRQFIWLFEDARHRHIENIL 205
Query: 218 ILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEKPK 277
ILSGDHLYRMDYM+FVQ HI+S DISV CLP+DESRASDFGL+KIDE G+IRQFLEKPK
Sbjct: 206 ILSGDHLYRMDYMEFVQKHIDSDADISVSCLPMDESRASDFGLIKIDEMGQIRQFLEKPK 265
Query: 278 GENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSEVIP 337
GE L+SM++DTTALGLS EA+ FPYIASMGIYLFKT+VLLK+LRW YP ANDFGSEVIP
Sbjct: 266 GETLKSMRVDTTALGLSPVEAKKFPYIASMGIYLFKTDVLLKLLRWSYPTANDFGSEVIP 325
Query: 338 MATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSK 397
MA ++ NVQAYLFN YWEDIGTIKSFFDANL+LTD+PPKFHFYDP KPIFTSPRFLPP+K
Sbjct: 326 MAAEECNVQAYLFNGYWEDIGTIKSFFDANLALTDQPPKFHFYDPLKPIFTSPRFLPPTK 385
Query: 398 IEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALL 457
IEKCRV DSIISHGCFLRECSVEHSIVGIRSRL+YGVE+KDTMMMGADYYQTE EIAA L
Sbjct: 386 IEKCRVMDSIISHGCFLRECSVEHSIVGIRSRLDYGVEMKDTMMMGADYYQTEEEIAAFL 445
Query: 458 AEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKN 517
AEGKVP+G+G+ TKI NCIIDKNA+IGKNV+I NKD VEEA+RPS+GFYIRSGITVVLKN
Sbjct: 446 AEGKVPIGVGKGTKIMNCIIDKNARIGKNVVITNKDKVEEADRPSEGFYIRSGITVVLKN 505
Query: 518 TTIKDGTII 526
+ I D TII
Sbjct: 506 SVIMDETII 514
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128113|ref|XP_002320247.1| predicted protein [Populus trichocarpa] gi|222861020|gb|EEE98562.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/445 (85%), Positives = 420/445 (94%)
Query: 82 VFEKPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKK 141
+FEK ADPK VA+IILGGGAGTRLFPLT RRAKPAVPIGGCYRLIDVPMSNCINSGI K
Sbjct: 1 MFEKQAADPKTVAAIILGGGAGTRLFPLTRRRAKPAVPIGGCYRLIDVPMSNCINSGINK 60
Query: 142 IYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQF 201
IYILTQFNSQSLNRHI+RTYN G+G++FGDGFVEVLAATQ GESGKKWFQGTADAVRQF
Sbjct: 61 IYILTQFNSQSLNRHIARTYNQGNGVDFGDGFVEVLAATQTPGESGKKWFQGTADAVRQF 120
Query: 202 IWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLM 261
IW+FEDAK RNIENIL+LSGDHLYRMDYMDF+Q HI SG DI V CLPV++SRASDFGL+
Sbjct: 121 IWLFEDAKLRNIENILVLSGDHLYRMDYMDFLQKHIESGADICVSCLPVNDSRASDFGLV 180
Query: 262 KIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVL 321
KIDETG+IRQFLEKPKGENL+SM++DTT LGLSAQEA FPYIASMGIY+FKT+VLLK+L
Sbjct: 181 KIDETGQIRQFLEKPKGENLKSMKVDTTVLGLSAQEANKFPYIASMGIYMFKTDVLLKLL 240
Query: 322 RWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYD 381
RW+YP ANDFGSE+IPM+TK++NVQAYLFN YWEDIGTIKSFFDANL+LTD+PP FHF+D
Sbjct: 241 RWNYPTANDFGSEIIPMSTKEYNVQAYLFNGYWEDIGTIKSFFDANLALTDQPPNFHFFD 300
Query: 382 PQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMM 441
P KPIFTSPRFLPP+KIEKCRV+DSI+SHGCFLRECSVE SIVG+RSRLEYGVELKDTMM
Sbjct: 301 PLKPIFTSPRFLPPTKIEKCRVKDSIVSHGCFLRECSVERSIVGVRSRLEYGVELKDTMM 360
Query: 442 MGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERP 501
+GADYYQTEAEIAA LAEG+VPVG+G+DTKI NCIIDKNA+IGKNVIIANK+GV+EAERP
Sbjct: 361 IGADYYQTEAEIAASLAEGRVPVGVGKDTKIMNCIIDKNARIGKNVIIANKEGVQEAERP 420
Query: 502 SDGFYIRSGITVVLKNTTIKDGTII 526
S+GFYIRSGITVVLKN+ IKDGTII
Sbjct: 421 SEGFYIRSGITVVLKNSVIKDGTII 445
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147818953|emb|CAN67125.1| hypothetical protein VITISV_040166 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/450 (84%), Positives = 413/450 (91%)
Query: 77 TFQAPVFEKPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCIN 136
T AP KPEADPK VASIILGGGAGTRLFPLT RAKPAVPIGGCYRLIDVPMSNCIN
Sbjct: 3 TLDAPELAKPEADPKTVASIILGGGAGTRLFPLTKSRAKPAVPIGGCYRLIDVPMSNCIN 62
Query: 137 SGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTAD 196
SGI KIYILTQFNSQSLNRHI+RTYNLG G+NFGDGFVEVLAATQ GESGKKWFQGTAD
Sbjct: 63 SGINKIYILTQFNSQSLNRHIARTYNLGSGVNFGDGFVEVLAATQTSGESGKKWFQGTAD 122
Query: 197 AVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRAS 256
AVRQFIW+FEDA+HR+IENILILSGDHLYRMDYM+FVQ HI+S DISV CLP+DESRAS
Sbjct: 123 AVRQFIWLFEDARHRHIENILILSGDHLYRMDYMEFVQKHIDSDADISVSCLPMDESRAS 182
Query: 257 DFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEV 316
DFGL+KIDE G+IRQFLEKPKGE L+SM++DTTALGLS EA+ FPYIASMGIYLFKT+V
Sbjct: 183 DFGLIKIDEMGQIRQFLEKPKGETLKSMRVDTTALGLSPVEAKKFPYIASMGIYLFKTDV 242
Query: 317 LLKVLRWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPK 376
LLK+LRW YP ANDFGSEVIPMA ++ NVQAYLFN YWEDIGTIKSFFDANL+LTD+PPK
Sbjct: 243 LLKLLRWSYPTANDFGSEVIPMAAEECNVQAYLFNGYWEDIGTIKSFFDANLALTDQPPK 302
Query: 377 FHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVEL 436
FHFYDP KPIFTS RFLPP+KIEKCRV DSIISHGCFLRECSVEHSIVGIRSRL+YGVE+
Sbjct: 303 FHFYDPLKPIFTSSRFLPPTKIEKCRVMDSIISHGCFLRECSVEHSIVGIRSRLDYGVEM 362
Query: 437 KDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVE 496
KDTMMMGADYYQTE EIAA LAEGKVP+G+G+DTKI NCIIDKNA+IGKNV+I NKD VE
Sbjct: 363 KDTMMMGADYYQTEEEIAAFLAEGKVPIGVGKDTKIMNCIIDKNARIGKNVVITNKDKVE 422
Query: 497 EAERPSDGFYIRSGITVVLKNTTIKDGTII 526
EA+RPS+GFYIRSGITVVLKN+ I D TII
Sbjct: 423 EADRPSEGFYIRSGITVVLKNSVIMDETII 452
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744104|emb|CBI37074.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/466 (81%), Positives = 412/466 (88%), Gaps = 16/466 (3%)
Query: 77 TFQAPVFEKPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCIN 136
T AP KPEADPK VASIILGGGAGTRLFPLT RAKPAVPIGGCYRLIDVPMSNCIN
Sbjct: 11 TLDAPELAKPEADPKTVASIILGGGAGTRLFPLTKSRAKPAVPIGGCYRLIDVPMSNCIN 70
Query: 137 SGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTAD 196
SGI KIYILTQFNSQSLNRHI+RTYNLG G+NFGDGFVEVLAATQ GESGKKWFQGTAD
Sbjct: 71 SGINKIYILTQFNSQSLNRHIARTYNLGSGVNFGDGFVEVLAATQTSGESGKKWFQGTAD 130
Query: 197 AVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRAS 256
AVRQFIW+FEDA+HR+IENILILSGDHLYRMDYM+FVQ HI+S DISV CLP+DESRAS
Sbjct: 131 AVRQFIWLFEDARHRHIENILILSGDHLYRMDYMEFVQKHIDSDADISVSCLPMDESRAS 190
Query: 257 DFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEV 316
DFGL+KIDE G+IRQFLEKPKGE L+SM++DTTALGLS EA+ FPYIASMGIYLFKT+V
Sbjct: 191 DFGLIKIDEMGQIRQFLEKPKGETLKSMRVDTTALGLSPVEAKKFPYIASMGIYLFKTDV 250
Query: 317 LLKVLR----------------WHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTI 360
LLK+L W YP ANDFGSEVIPMA ++ NVQAYLFN YWEDIGTI
Sbjct: 251 LLKLLSFGFNSLLLGALSISFLWSYPTANDFGSEVIPMAAEECNVQAYLFNGYWEDIGTI 310
Query: 361 KSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVE 420
KSFFDANL+LTD+PPKFHFYDP KPIFTSPRFLPP+KIEKCRV DSIISHGCFLRECSVE
Sbjct: 311 KSFFDANLALTDQPPKFHFYDPLKPIFTSPRFLPPTKIEKCRVMDSIISHGCFLRECSVE 370
Query: 421 HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKN 480
HSIVGIRSRL+YGVE+KDTMMMGADYYQTE EIAA LAEGKVP+G+G+ TKI NCIIDKN
Sbjct: 371 HSIVGIRSRLDYGVEMKDTMMMGADYYQTEEEIAAFLAEGKVPIGVGKGTKIMNCIIDKN 430
Query: 481 AKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526
A+IGKNV+I NKD VEEA+RPS+GFYIRSGITVVLKN+ I D TII
Sbjct: 431 ARIGKNVVITNKDKVEEADRPSEGFYIRSGITVVLKNSVIMDETII 476
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359357900|gb|AEV40472.1| ADP-glucose pyrophosphorylase 2 [Spirodela polyrhiza] gi|359357902|gb|AEV40473.1| ADP-glucose pyrophosphorylase 2 [Spirodela polyrhiza] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/464 (78%), Positives = 419/464 (90%)
Query: 63 SVRSILADVAKDYMTFQAPVFEKPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGG 122
SV SILAD+ KD T + P F EADP++VAS+ILGGGAGTRLFPLT RAKPAVPIGG
Sbjct: 73 SVSSILADIPKDLTTLEEPNFRNSEADPRSVASLILGGGAGTRLFPLTRMRAKPAVPIGG 132
Query: 123 CYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQR 182
CYRLIDVPMSNCINSGI KIYILTQFNSQSLNRH++RTYNLG+G+NFGDGFVEVLAATQ
Sbjct: 133 CYRLIDVPMSNCINSGINKIYILTQFNSQSLNRHLARTYNLGNGVNFGDGFVEVLAATQT 192
Query: 183 QGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGD 242
GE GK+WFQGTADAVRQF+W+FEDAK R+IENILILSGDHLYRMDYM+F+Q HIN+G D
Sbjct: 193 SGEDGKRWFQGTADAVRQFVWLFEDAKLRHIENILILSGDHLYRMDYMEFLQRHINTGAD 252
Query: 243 ISVCCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFP 302
ISV C+P+DESRASDFGLMKID G + FLEKPKGE+L++MQ+DT+ LGLS Q+A+ FP
Sbjct: 253 ISVSCVPMDESRASDFGLMKIDGRGCVSHFLEKPKGESLKTMQVDTSVLGLSPQDAKRFP 312
Query: 303 YIASMGIYLFKTEVLLKVLRWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKS 362
YIASMGIYLFKT+VLLK+LR YP +NDFGSE+IPMA KD+NVQAYLFN YWEDIGTIKS
Sbjct: 313 YIASMGIYLFKTDVLLKLLRSQYPHSNDFGSEIIPMAAKDYNVQAYLFNGYWEDIGTIKS 372
Query: 363 FFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHS 422
FFDANL+L D+P KFHFYDP KPIFTSPRFLPP+KIEKCRV +SI+SHGCFL EC+VEHS
Sbjct: 373 FFDANLALADQPAKFHFYDPSKPIFTSPRFLPPTKIEKCRVLNSIVSHGCFLNECTVEHS 432
Query: 423 IVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAK 482
I+G+RSRLE G EL DTM+MGADYYQTEAEIA++LAEGKVP+GIGR+TKI+NCIIDKNAK
Sbjct: 433 IIGVRSRLESGAELVDTMVMGADYYQTEAEIASILAEGKVPIGIGRNTKIRNCIIDKNAK 492
Query: 483 IGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526
IG++V+IAN + VEEAERPS+GFYIRSGITVV+KN TI +GT+I
Sbjct: 493 IGRDVVIANSEKVEEAERPSEGFYIRSGITVVVKNATIPNGTVI 536
|
Source: Spirodela polyrhiza Species: Spirodela polyrhiza Genus: Spirodela Family: Araceae Order: Alismatales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2642640|gb|AAB91468.1| ADP-glucose pyrophosphorylase large subunit 2 [Citrullus lanatus subsp. vulgaris] | Back alignment and taxonomy information |
|---|
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/476 (74%), Positives = 421/476 (88%), Gaps = 1/476 (0%)
Query: 52 PRKT-RATSKRFSVRSILADVAKDYMTFQAPVFEKPEADPKAVASIILGGGAGTRLFPLT 110
PR T R + + +++++++ T QAP+FE P ADPK +ASIILGGGAGTRLFPLT
Sbjct: 6 PRSTARKLTPGVAYSVLMSEISEVSSTLQAPIFETPRADPKKIASIILGGGAGTRLFPLT 65
Query: 111 GRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170
+RAKPAVPIGGCYRLID+PMSNCINSGI+KI++LTQFNS SLNRH++R YN G+G+NFG
Sbjct: 66 SQRAKPAVPIGGCYRLIDIPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFG 125
Query: 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYM 230
DGFVEVLAATQ GE+GKKWFQGTADAVRQFIW+FEDAK +N+E+ LILSGDHLYRMDYM
Sbjct: 126 DGFVEVLAATQTSGETGKKWFQGTADAVRQFIWLFEDAKTKNVEHTLILSGDHLYRMDYM 185
Query: 231 DFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTA 290
DFVQ HI++ DI+V C+P+D+SRASD+GLMKID+TGRI F EKPKG +L +M++DTT
Sbjct: 186 DFVQRHIDTNADITVSCIPMDDSRASDYGLMKIDDTGRILHFAEKPKGSDLEAMKVDTTV 245
Query: 291 LGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSEVIPMATKDFNVQAYLF 350
LGLS Q+AR PYIASMG+Y+F+T++LLK+L W YP NDFGSE+IP A KD+ VQAYLF
Sbjct: 246 LGLSNQDARKNPYIASMGVYIFRTDLLLKLLTWSYPSCNDFGSEIIPSAVKDYKVQAYLF 305
Query: 351 NDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISH 410
NDYWEDIGT+KSFFDANL+LT++PPKF FYDP+ P +TSPRFLPPSK+EKCR+ D+IISH
Sbjct: 306 NDYWEDIGTVKSFFDANLALTEQPPKFEFYDPKTPFYTSPRFLPPSKVEKCRIVDAIISH 365
Query: 411 GCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDT 470
GCFLRECSVEHSIVG+RSRLEYGVELKDTMMMGADYYQTE+EIA+LLAEGK+P+GIG +T
Sbjct: 366 GCFLRECSVEHSIVGVRSRLEYGVELKDTMMMGADYYQTESEIASLLAEGKIPIGIGENT 425
Query: 471 KIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526
KI+NCIIDKNA+IG+NV+IAN D V+EA+RP DGFYIRSGITV LKN TIKDGTII
Sbjct: 426 KIRNCIIDKNARIGRNVVIANSDDVQEADRPEDGFYIRSGITVTLKNATIKDGTII 481
|
Source: Citrullus lanatus subsp. vulgaris Species: Citrullus lanatus Genus: Citrullus Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571037|ref|XP_003553688.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/512 (74%), Positives = 428/512 (83%), Gaps = 4/512 (0%)
Query: 15 QQERLLPTSSFSGIRVSTATGQPNSSVSGVQLGKFNIPRKTRATSKRFSVRSILADVAKD 74
++R LP SSF+G RV+ S SG +LGK+ R T++RF S LADVA D
Sbjct: 21 HRDRNLP-SSFTGSRVNLL--HSKSVASGFRLGKY-FSVTQRNTTRRFLATSTLADVAND 76
Query: 75 YMTFQAPVFEKPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNC 134
+M Q+P+ EA+PK VASIILGGGAGTRLFPLT RRAKPAVP GGCYRL+D+PMSNC
Sbjct: 77 FMALQSPILTGREANPKTVASIILGGGAGTRLFPLTQRRAKPAVPFGGCYRLVDIPMSNC 136
Query: 135 INSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGT 194
INSGI KIY+LTQFNSQSLNRHI+RTYN G +NFG GFVEVLAATQ GESGKKWFQGT
Sbjct: 137 INSGINKIYVLTQFNSQSLNRHIARTYNWGGCINFGGGFVEVLAATQTPGESGKKWFQGT 196
Query: 195 ADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESR 254
ADAVRQF+W+FEDA H+NIENILIL GD LYRMDYM+ VQ HINS DISV CLPVD SR
Sbjct: 197 ADAVRQFLWLFEDADHKNIENILILCGDQLYRMDYMEIVQKHINSCADISVSCLPVDGSR 256
Query: 255 ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKT 314
ASDFGL+K+DE G+I QFLEKPKGE LRSM +DT+ GLSAQEAR FPYIASMGIY+FK
Sbjct: 257 ASDFGLVKVDERGQICQFLEKPKGELLRSMHVDTSIFGLSAQEARKFPYIASMGIYVFKI 316
Query: 315 EVLLKVLRWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKP 374
+VLLKVLR YP ANDFGSEVIPMA KDFNVQA LFN YWEDIGTIKSFFDANL+L D+
Sbjct: 317 DVLLKVLRGCYPNANDFGSEVIPMAAKDFNVQACLFNGYWEDIGTIKSFFDANLALMDQR 376
Query: 375 PKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGV 434
PKF YD KPIFT PRFLPP+K+EKC V +S+IS GCFL+EC+VEHSIVGIRSRL+ GV
Sbjct: 377 PKFQLYDQSKPIFTCPRFLPPTKMEKCEVINSLISDGCFLKECTVEHSIVGIRSRLDSGV 436
Query: 435 ELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDG 494
+LKDTM+MGADYYQTEAEIA+LLA G VP+GIG++TKI NCIIDKNA+IG NVIIANKD
Sbjct: 437 QLKDTMIMGADYYQTEAEIASLLAAGNVPIGIGKNTKIVNCIIDKNARIGNNVIIANKDN 496
Query: 495 VEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526
V+EA+RPS+GFYIRSGITVVLK + I +GTII
Sbjct: 497 VQEADRPSEGFYIRSGITVVLKESVISNGTII 528
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224085694|ref|XP_002307668.1| predicted protein [Populus trichocarpa] gi|222857117|gb|EEE94664.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/460 (76%), Positives = 418/460 (90%)
Query: 67 ILADVAKDYMTFQAPVFEKPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRL 126
+ +DV K+ +TF+APVFE +ADP VASIILGGGAGTRLFPLT +RAKPAVPIGGCYRL
Sbjct: 16 LTSDVNKEIVTFEAPVFETQQADPGNVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRL 75
Query: 127 IDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGES 186
ID+PMSNCINSGIKKI+ILTQFNS SLNRHI+RTYNLG+G++FGDGFVEVLAATQ GE+
Sbjct: 76 IDIPMSNCINSGIKKIFILTQFNSFSLNRHIARTYNLGNGVSFGDGFVEVLAATQTPGET 135
Query: 187 GKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVC 246
GKKWFQGTADAVRQFIW+FEDA+++N+E++LILSGDHLYRM+YM+FVQ HI++ D++V
Sbjct: 136 GKKWFQGTADAVRQFIWVFEDARNKNVEHVLILSGDHLYRMNYMEFVQKHIDTNADVTVS 195
Query: 247 CLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIAS 306
C+P+D+SRASD+GLMKID TGRI QF EKPKG +L++MQ+DTT LGLS QEA FPYIAS
Sbjct: 196 CVPMDDSRASDYGLMKIDNTGRIVQFAEKPKGPDLKAMQVDTTLLGLSRQEAMQFPYIAS 255
Query: 307 MGIYLFKTEVLLKVLRWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDA 366
MG+Y+F+T+VLLK+LRW YP NDFGSE+IP A +D NVQAYLFNDYWEDIGT+KSFFDA
Sbjct: 256 MGVYVFRTDVLLKLLRWSYPSCNDFGSEIIPSAVRDHNVQAYLFNDYWEDIGTVKSFFDA 315
Query: 367 NLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGI 426
NL LT +PPKF FYDPQ P FTSPRFLPP+K+++CR+ D+IISHGCFLRECSV+HSIVG+
Sbjct: 316 NLGLTKQPPKFEFYDPQTPFFTSPRFLPPTKVDRCRIVDAIISHGCFLRECSVQHSIVGV 375
Query: 427 RSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKN 486
RSRLE GVEL DTMMMGADYYQTE+EIA+LLAEGKVP+G+G++TKI+NCIIDKNAKIGK+
Sbjct: 376 RSRLESGVELTDTMMMGADYYQTESEIASLLAEGKVPIGVGQNTKIRNCIIDKNAKIGKD 435
Query: 487 VIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526
VII N DGV+EA+RPS+GFYIRSGIT VLKN IKDGT+I
Sbjct: 436 VIITNADGVQEADRPSEGFYIRSGITAVLKNAAIKDGTLI 475
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460245|ref|XP_004147856.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/460 (75%), Positives = 415/460 (90%)
Query: 67 ILADVAKDYMTFQAPVFEKPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRL 126
+++++ ++ T QAP+FE P ADPK +ASIILGGGAGTRLFPLT +RAKPAVPIGGCYRL
Sbjct: 73 LMSEINEETSTLQAPIFEAPRADPKKIASIILGGGAGTRLFPLTSQRAKPAVPIGGCYRL 132
Query: 127 IDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGES 186
ID+PMSNCINSGI+KI++LTQFNS SLNRH++R YN G+G+NFGDGFVEVLAATQ GE+
Sbjct: 133 IDIPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEVLAATQTSGET 192
Query: 187 GKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVC 246
GKKWFQGTADAVRQFIW+FEDAK +N+E+ LILSGDHLYRMDYMDFVQ HI++ DI+V
Sbjct: 193 GKKWFQGTADAVRQFIWLFEDAKTKNVEHTLILSGDHLYRMDYMDFVQRHIDTNADITVS 252
Query: 247 CLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIAS 306
C+P+D+SRASD+GLMKID+TGRI F EKPKG +L +MQ+DTT LGLS ++AR PYIAS
Sbjct: 253 CIPMDDSRASDYGLMKIDDTGRILDFAEKPKGSDLEAMQVDTTVLGLSDEDARKNPYIAS 312
Query: 307 MGIYLFKTEVLLKVLRWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDA 366
MG+Y+F+T++LLK+L W YP NDFGSE+IP A KD+ VQAYLFNDYWEDIGT+KSFFDA
Sbjct: 313 MGVYVFRTDLLLKLLTWSYPACNDFGSEIIPAAVKDYKVQAYLFNDYWEDIGTVKSFFDA 372
Query: 367 NLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGI 426
NL+LT++PPKF FYDP+ P +TSPRFLPPSK+EKC++ D+IISHGCFLREC+VEHSIVG+
Sbjct: 373 NLALTEQPPKFEFYDPKTPFYTSPRFLPPSKVEKCKIVDAIISHGCFLRECTVEHSIVGV 432
Query: 427 RSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKN 486
RSRLEYGVELKDTMMMGADYYQTE+EIA+LLAEGK+P+GIG +TKI+NCIIDKNAKIG+N
Sbjct: 433 RSRLEYGVELKDTMMMGADYYQTESEIASLLAEGKIPIGIGENTKIRNCIIDKNAKIGRN 492
Query: 487 VIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526
V+IAN D V+EAERP +GFYIRSGITV LKN TIKDGTII
Sbjct: 493 VVIANTDDVQEAERPEEGFYIRSGITVTLKNATIKDGTII 532
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 526 | ||||||
| TAIR|locus:2199241 | 518 | APL2 "ADPGLC-PPase large subun | 0.918 | 0.932 | 0.720 | 1.2e-193 | |
| TAIR|locus:2049364 | 523 | APL4 [Arabidopsis thaliana (ta | 0.982 | 0.988 | 0.643 | 4.8e-181 | |
| TAIR|locus:2136358 | 521 | APL3 [Arabidopsis thaliana (ta | 0.863 | 0.871 | 0.701 | 1e-180 | |
| TAIR|locus:2182132 | 522 | APL1 "ADP glucose pyrophosphor | 0.956 | 0.963 | 0.647 | 6.3e-179 | |
| TAIR|locus:2156263 | 520 | ADG1 "ADP glucose pyrophosphor | 0.823 | 0.832 | 0.575 | 1.4e-135 | |
| UNIPROTKB|P15280 | 514 | AGPS "Glucose-1-phosphate aden | 0.927 | 0.949 | 0.520 | 6.9e-134 | |
| TAIR|locus:2032003 | 476 | APS2 "AT1G05610" [Arabidopsis | 0.800 | 0.884 | 0.403 | 2.7e-84 | |
| TIGR_CMR|SO_1498 | 420 | SO_1498 "glucose-1-phosphate a | 0.712 | 0.892 | 0.360 | 2.4e-53 | |
| UNIPROTKB|Q9KLP4 | 407 | glgC2 "Glucose-1-phosphate ade | 0.657 | 0.850 | 0.347 | 5.6e-52 | |
| TIGR_CMR|VC_A0699 | 407 | VC_A0699 "glucose-1-phosphate | 0.657 | 0.850 | 0.347 | 5.6e-52 |
| TAIR|locus:2199241 APL2 "ADPGLC-PPase large subunit" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1876 (665.4 bits), Expect = 1.2e-193, P = 1.2e-193
Identities = 354/491 (72%), Positives = 421/491 (85%)
Query: 39 SSVSGVQLGKFNIPRKTR---ATSKRFS---VRSILADVAKDYMTFQAPVFEKPEADPKA 92
S+ G Q+ K N R T+ A K+ +RS+L D + + P+ ADPK
Sbjct: 27 SAFWGTQVVKPNHLRTTKLRSAPQKKIQTNLIRSVLTPFV-DQESHE-PLLRTQNADPKN 84
Query: 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQS 152
VASIILGGGAGTRLFPLT +RAKPAVPIGGCYRLID+PMSNCINSGI+KI+ILTQFNS S
Sbjct: 85 VASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFS 144
Query: 153 LNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRN 212
LNRH+SRTYN G+G+NFGDGFVEVLAATQ G++GKKWFQGTADAVRQFIW+FEDAK +N
Sbjct: 145 LNRHLSRTYNFGNGVNFGDGFVEVLAATQTSGDAGKKWFQGTADAVRQFIWVFEDAKTKN 204
Query: 213 IENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQF 272
+E++LILSGDHLYRMDYM+FVQ HI S DI+V CLP+DESRASDFGL+KID++G+I QF
Sbjct: 205 VEHVLILSGDHLYRMDYMNFVQKHIESNADITVSCLPMDESRASDFGLLKIDQSGKIIQF 264
Query: 273 LEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFG 332
EKPKG++L++MQ+DT+ LGL +EA PYIASMG+Y+F+ EVLLK+LR YP +NDFG
Sbjct: 265 SEKPKGDDLKAMQVDTSILGLPPKEAAESPYIASMGVYVFRKEVLLKLLRSSYPTSNDFG 324
Query: 333 SEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRF 392
SE+IP+A + NVQA+LFNDYWEDIGTI SFFDANL+LT++PPKF FYD + P FTSPRF
Sbjct: 325 SEIIPLAVGEHNVQAFLFNDYWEDIGTIGSFFDANLALTEQPPKFQFYDQKTPFFTSPRF 384
Query: 393 LPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAE 452
LPP+K++KCR+ DSI+SHGCFLRECSV+HSIVGIRSRLE GVEL+DTMMMGAD+YQTEAE
Sbjct: 385 LPPTKVDKCRILDSIVSHGCFLRECSVQHSIVGIRSRLESGVELQDTMMMGADFYQTEAE 444
Query: 453 IAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT 512
IA+LLAEGKVPVG+G++TKIKNCIIDKNAKIGKNV+IAN DGVEE +RP +GF+IRSGIT
Sbjct: 445 IASLLAEGKVPVGVGQNTKIKNCIIDKNAKIGKNVVIANADGVEEGDRPEEGFHIRSGIT 504
Query: 513 VVLKNTTIKDG 523
VVLKN TI+DG
Sbjct: 505 VVLKNATIRDG 515
|
|
| TAIR|locus:2049364 APL4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1757 (623.6 bits), Expect = 4.8e-181, P = 4.8e-181
Identities = 337/524 (64%), Positives = 416/524 (79%)
Query: 7 SSISSGMPQQERLLPTSSFSGIRVSTATGQPNSSVSGV--QLGKFNIPRKTRATSKRFSV 64
SS S + +LP SF + + G+ N++ +G+ + G +K R + V
Sbjct: 3 SSYSFALGTSSSILPKLSFRNVE-NRFYGEKNNN-NGLCKRFGSDLGSKKFRNQKFKHGV 60
Query: 65 RSILA--DVAKDYMTFQAPVFEKPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGG 122
+A D K MT + +FE+ + DP+ VA+IILGGG G +LFPLT R A PAVP+GG
Sbjct: 61 VYAVATSDNPKKAMTVKTSMFERRKVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGG 120
Query: 123 CYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQR 182
CYRLID+PMSNCINS I KI++LTQFNS SLNRH++RTY G+G+NFG GFVEVLAATQ
Sbjct: 121 CYRLIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTY-FGNGINFGGGFVEVLAATQT 179
Query: 183 QGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGD 242
GE+GKKWFQGTADAVR+F+W+FEDAK+RNIENILILSGDHLYRM+YMDFVQ H++S D
Sbjct: 180 PGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNAD 239
Query: 243 ISVCCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFP 302
I++ C PV ESRAS+FGL+KID GR+ F EKP G +L+SMQ DTT LGLS QEA + P
Sbjct: 240 ITLSCAPVSESRASNFGLVKIDRGGRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSP 299
Query: 303 YIASMGIYLFKTEVLLKVLRWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKS 362
YIASMG+Y FKTE LL +L YP +NDFGSEVIP A +D +VQ Y+F DYWEDIGTIK+
Sbjct: 300 YIASMGVYCFKTEALLNLLTRQYPSSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKT 359
Query: 363 FFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHS 422
F++ANL+L ++ PKF FYDP+ P +TSPRFLPP+K EKCR+ DSIISHGCFLRECSV+ S
Sbjct: 360 FYEANLALVEERPKFEFYDPETPFYTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRS 419
Query: 423 IVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAK 482
I+G RSRL+YGVEL+DT+M+GADYYQTE+EIA+LLAEGKVP+GIG+DTKI+ CIIDKNAK
Sbjct: 420 IIGERSRLDYGVELQDTLMLGADYYQTESEIASLLAEGKVPIGIGKDTKIRKCIIDKNAK 479
Query: 483 IGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526
IGKNVII NK V+EA+RP +GFYIRSGITV+++ TI+DGT+I
Sbjct: 480 IGKNVIIMNKGDVQEADRPEEGFYIRSGITVIVEKATIQDGTVI 523
|
|
| TAIR|locus:2136358 APL3 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1754 (622.5 bits), Expect = 1.0e-180, P = 1.0e-180
Identities = 319/455 (70%), Positives = 387/455 (85%)
Query: 72 AKDYMTFQAPVFEKPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPM 131
AK+ + Q +FE+ ADPK VA+IILGGG G +LFPLT R A PAVP+GGCYR+ID+PM
Sbjct: 68 AKEALKNQPSMFERRRADPKNVAAIILGGGDGAKLFPLTKRAATPAVPVGGCYRMIDIPM 127
Query: 132 SNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWF 191
SNCINS I KI++LTQFNS SLNRH++RTY G+G+NFGDGFVEVLAATQ GE+GKKWF
Sbjct: 128 SNCINSCINKIFVLTQFNSASLNRHLARTY-FGNGINFGDGFVEVLAATQTPGEAGKKWF 186
Query: 192 QGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVD 251
QGTADAVR+F+W+FEDAK+RNIENI+ILSGDHLYRM+YMDFVQHH++S DI++ C PVD
Sbjct: 187 QGTADAVRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMDFVQHHVDSKADITLSCAPVD 246
Query: 252 ESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYL 311
ESRAS++GL+ ID +GR+ F EKP G +L+SMQ DTT GLS QEA PYIASMG+Y
Sbjct: 247 ESRASEYGLVNIDRSGRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEAAKSPYIASMGVYC 306
Query: 312 FKTEVLLKVLRWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371
FKTE LLK+L W YP +NDFGSE+IP A KD NVQ Y++ DYWEDIGTIKSF++AN++L
Sbjct: 307 FKTEALLKLLTWRYPSSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIGTIKSFYEANIALV 366
Query: 372 DKPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLE 431
++ PKF FYD P +TSPRFLPP+K EKCR+ +S+ISHGCFL ECS++ SI+G RSRL+
Sbjct: 367 EEHPKFEFYDQNTPFYTSPRFLPPTKTEKCRIVNSVISHGCFLGECSIQRSIIGERSRLD 426
Query: 432 YGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIAN 491
YGVEL+DT+M+GAD YQTE+EIA+LLAEG VP+GIGRDTKI+ CIIDKNAKIGKNV+I N
Sbjct: 427 YGVELQDTLMLGADSYQTESEIASLLAEGNVPIGIGRDTKIRKCIIDKNAKIGKNVVIMN 486
Query: 492 KDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526
KD V+EA+RP +GFYIRSGITVV++ TIKDGT+I
Sbjct: 487 KDDVKEADRPEEGFYIRSGITVVVEKATIKDGTVI 521
|
|
| TAIR|locus:2182132 APL1 "ADP glucose pyrophosphorylase large subunit 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1737 (616.5 bits), Expect = 6.3e-179, P = 6.3e-179
Identities = 327/505 (64%), Positives = 400/505 (79%)
Query: 23 SSFSGIRVSTATGQ-PNSSVSGVQLGKFNIPRKTRATSKRFSVRSILADVAKDYMTFQAP 81
SS +G+ G N + G +L +P +S FS + IL + +
Sbjct: 19 SSSTGLTRHIKLGSFCNGELMGKKLNLSQLPNIRLRSSTNFSQKRILMSLNSVAGESKVQ 78
Query: 82 VFEKPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKK 141
E + DP+ VASIILGGGAGTRLFPLT RRAKPAVPIGG YRLIDVPMSNCINSGI K
Sbjct: 79 ELETEKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINK 138
Query: 142 IYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQF 201
+YILTQ+NS SLNRH++R YN +G+ FGDG+VEVLAATQ GESGK+WFQGTADAVRQF
Sbjct: 139 VYILTQYNSASLNRHLARAYN-SNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQF 197
Query: 202 IWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLM 261
W+FEDA+ ++IE++LILSGDHLYRMDYMDF+Q H SG DIS+ C+P+D+ RASDFGLM
Sbjct: 198 HWLFEDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLM 257
Query: 262 KIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVL 321
KID+ GR+ F EKPKG++L++M +DTT LGLS +EA PYIASMG+Y+FK E+LL +L
Sbjct: 258 KIDDKGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLL 317
Query: 322 RWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYD 381
RW +P ANDFGSE+IP + K+F V AYLFNDYWEDIGTI+SFF+ANL+LT+ P F FYD
Sbjct: 318 RWRFPTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYD 377
Query: 382 PQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMM 441
KPI+TS R LPPSKI+ ++ DSIISHG FL C +EHSIVGIRSR+ V+LKDT+M
Sbjct: 378 AAKPIYTSRRNLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVM 437
Query: 442 MGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERP 501
+GADYY+TEAE+AALLAEG VP+GIG +TKI+ CIIDKNA++GKNVIIAN +G++EA+R
Sbjct: 438 LGADYYETEAEVAALLAEGNVPIGIGENTKIQECIIDKNARVGKNVIIANSEGIQEADRS 497
Query: 502 SDGFYIRSGITVVLKNTTIKDGTII 526
SDGFYIRSGITV+LKN+ IKDG +I
Sbjct: 498 SDGFYIRSGITVILKNSVIKDGVVI 522
|
|
| TAIR|locus:2156263 ADG1 "ADP glucose pyrophosphorylase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1328 (472.5 bits), Expect = 1.4e-135, P = 1.4e-135
Identities = 256/445 (57%), Positives = 331/445 (74%)
Query: 86 PEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYIL 145
P+A +V IILGGGAGTRL+PLT +RAKPAVP+G YRLID+P+SNC+NS I KIY+L
Sbjct: 84 PDAS-SSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVL 142
Query: 146 TQFNSQSLNRHISRTY--NLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIW 203
TQFNS SLNRH+SR Y N+G N +GFVEVLAA +Q WFQGTADAVRQ++W
Sbjct: 143 TQFNSASLNRHLSRAYASNMGGYKN--EGFVEVLAA--QQSPENPNWFQGTADAVRQYLW 198
Query: 204 MFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKI 263
+FE+ H N+ LIL+GDHLYRMDY F+Q H + DI+V LP+DE RA+ FGLMKI
Sbjct: 199 LFEE--H-NVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEQRATAFGLMKI 255
Query: 264 DETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW 323
DE GRI +F EKPKGE+L++M++DTT LGL Q A+ P+IASMGIY+ +V+L +LR
Sbjct: 256 DEEGRIIEFAEKPKGEHLKAMKVDTTILGLDDQRAKEMPFIASMGIYVVSRDVMLDLLRN 315
Query: 324 HYPEANDFGSEVIPMATK-DFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKP-PKFHFYD 381
+P ANDFGSEVIP AT VQAYL++ YWEDIGTI++F++ANL +T KP P F FYD
Sbjct: 316 QFPGANDFGSEVIPGATSLGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYD 375
Query: 382 PQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMM 441
PI+T PR+LPPSK+ V DS+I GC ++ C + HS+VG+RS + G ++D+++
Sbjct: 376 RSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLL 435
Query: 442 MGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERP 501
MGADYY+T E + L A+G VP+GIG+++ IK IIDKNA+IG NV I N D V+EA R
Sbjct: 436 MGADYYETATEKSLLSAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIINSDNVQEAARE 495
Query: 502 SDGFYIRSGITVVLKNTTIKDGTII 526
+DG++I+SGI V+K+ I GT+I
Sbjct: 496 TDGYFIKSGIVTVIKDALIPTGTVI 520
|
|
| UNIPROTKB|P15280 AGPS "Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1312 (466.9 bits), Expect = 6.9e-134, P = 6.9e-134
Identities = 266/511 (52%), Positives = 351/511 (68%)
Query: 22 TSSFSGIRVSTATGQPNS--SVSGVQLGKFNIPRKTRATSKRFSVRSILADVAKDYMTFQ 79
++S +R+ A G+P V+ + R+ R FS R++ D + Q
Sbjct: 21 STSCDSLRLLVAEGRPRRPRGVASSSSSSSSAGRRRRPLV--FSPRAV-----SDSKSSQ 73
Query: 80 APVFEKPEADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGI 139
+ P+A +V IILGGGAGTRL+PLT +RAKPAVP+G YRLID+P+SNC+NS I
Sbjct: 74 TCL--DPDAST-SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNI 130
Query: 140 KKIYILTQFNSQSLNRHISRTY--NLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADA 197
KIY+LTQFNS SLNRH+SR Y N+G N +GFVEVLAA +Q WFQGTADA
Sbjct: 131 SKIYVLTQFNSASLNRHLSRAYGNNIGGYKN--EGFVEVLAA--QQSPDNPNWFQGTADA 186
Query: 198 VRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASD 257
VRQ++W+FE+ H N+ LIL+GDHLYRMDY F+Q H + DI+V LP+DE RA+
Sbjct: 187 VRQYLWLFEE--H-NVMEFLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATA 243
Query: 258 FGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVL 317
FGLMKIDE GRI +F EKPKGE L++M +DTT LGL A+ PYIASMGIY+ V+
Sbjct: 244 FGLMKIDEEGRIVEFAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYVISKNVM 303
Query: 318 LKVLRWHYPEANDFGSEVIPMATK-DFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKP-P 375
L++LR +P ANDFGSEVIP AT VQAYL++ YWEDIGTI++F++ANL +T KP P
Sbjct: 304 LQLLREQFPGANDFGSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVP 363
Query: 376 KFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVE 435
F FYD PI+T PR LPPSK+ V DS+I GC ++ C + HS+VG+RS + G
Sbjct: 364 DFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAI 423
Query: 436 LKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGV 495
++D+++MGADYY+TEA+ L +G +P+GIG++ I+ IIDKNA+IG NV I N D V
Sbjct: 424 IEDSLLMGADYYETEADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNVKIINVDNV 483
Query: 496 EEAERPSDGFYIRSGITVVLKNTTIKDGTII 526
+EA R +DG++I+SGI V+K+ + GT+I
Sbjct: 484 QEAARETDGYFIKSGIVTVIKDALLPSGTVI 514
|
|
| TAIR|locus:2032003 APS2 "AT1G05610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
Identities = 177/439 (40%), Positives = 275/439 (62%)
Query: 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNS 150
++VA+I+ GGG+ + L+PLT R+K A+PI YRLID +SNCINSGI KIY +TQFNS
Sbjct: 53 QSVAAIVFGGGSDSELYPLTKTRSKGAIPIAANYRLIDAVISNCINSGITKIYAITQFNS 112
Query: 151 QSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKH 210
SLN H+S+ Y+ G G+ D FVEV+AA Q + G WFQGTADA+R+ +W+FE+
Sbjct: 113 TSLNSHLSKAYS-GFGLG-KDRFVEVIAAYQSLEDQG--WFQGTADAIRRCLWVFEEFP- 167
Query: 211 RNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIR 270
+ L+L G HLY+MDY ++ H S DI++ L FG M++D T +
Sbjct: 168 --VTEFLVLPGHHLYKMDYKMLIEDHRRSRADITIVGLSSVTDHDFGFGFMEVDSTNAVT 225
Query: 271 QFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAND 330
+F K + ++L S+ + TA + + P S GIY+ E ++K+LR ++ D
Sbjct: 226 RFTIKGQ-QDLISVA-NRTATRSDGTSSCSVP---SAGIYVIGREQMVKLLRECLIKSKD 280
Query: 331 FGSEVIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTS 389
SE+IP A + V+A++F+ YWED+ +I +++ AN+ + + FYD Q P++T
Sbjct: 281 LASEIIPGAISEGMKVKAHMFDGYWEDVRSIGAYYRANM---ESIKSYRFYDRQCPLYTM 337
Query: 390 PRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQT 449
PR LPPS + + +SII GC L +C + S+VG+R+R+ V ++D++++G+D Y+
Sbjct: 338 PRCLPPSSMSVAVITNSIIGDGCILDKCVIRGSVVGMRTRIADEVIVEDSIIVGSDIYEM 397
Query: 450 EAEIAALLAEGKVPV--GIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYI 507
E ++ E K+ + GIG ++I+ I+DKNA+IGKNV+I N+D VEE R + G+ I
Sbjct: 398 EEDVRRKGKEKKIEIRIGIGEKSRIRRAIVDKNARIGKNVMIINRDNVEEGNREAQGYVI 457
Query: 508 RSGITVVLKNTTIKDGTII 526
R GI ++L+N I + +I+
Sbjct: 458 REGIIIILRNAVIPNDSIL 476
|
|
| TIGR_CMR|SO_1498 SO_1498 "glucose-1-phosphate adenylyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 160/444 (36%), Positives = 238/444 (53%)
Query: 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLN 154
++IL GG G+RL LT RAKPA+ GG +R+ID P+SNCINSGI+++ ++TQ+ S SL
Sbjct: 16 ALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLI 75
Query: 155 RHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIE 214
RH+ R + G+ VE+L A+QR E+ W+QGTADAV Q I + +H +
Sbjct: 76 RHVMRGWGHFK-KELGES-VEILPASQRYSEN---WYQGTADAVFQNI---DIIRHELPK 127
Query: 215 NILILSGDHLYRMDYMDFVQHHINSGGDISVCCL--PVDESRASDFGLMKIDETGRIRQF 272
+++LSGDH+YRMDY + H SG D++V CL PV E+ A FG+M++D+ RI F
Sbjct: 128 YVMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPVAEA-AGAFGVMEVDDDMRILGF 186
Query: 273 LEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAN--- 329
EKP Q+ G + ++ +ASMG Y+F TE L + L+ A
Sbjct: 187 EEKP--------QLPKHCPG-NPEKC-----LASMGNYVFNTEFLFEQLKKDAQNAESDR 232
Query: 330 DFGSEVIPMATKDFNVQAYLF-----ND--YWEDIGTIKSFFDANLSLTDKPPKFHFYDP 382
DFG ++IP + V AY F N+ YW D+GT+ SF+ AN+ L P + YD
Sbjct: 233 DFGKDIIPSIIEKHKVFAYPFKSAFPNEQAYWRDVGTLDSFWLANMELLSPTPALNLYDA 292
Query: 383 QKPIFTSPRFLPPSKI------EKCRVQDSIISHGCFLRECSVEHSIVGIRSRL-EYGVE 435
+ PI+T LPP+K + DSIIS GC + +V S++ R+ Y V
Sbjct: 293 KWPIWTYQEQLPPAKFVFDDDDRRGMAVDSIISGGCIISGATVRRSVLFNEVRVCSYSV- 351
Query: 436 LKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGV 495
++D++++ ++ L R KIKN IID+ I + +I
Sbjct: 352 VEDSVVL--------PDVVVL-----------RHCKIKNAIIDRGCIIPEGTVIGYNHDH 392
Query: 496 EEAE--RPSDGFYIRSGITVVLKN 517
+ A+ R S+ GIT+V ++
Sbjct: 393 DRAKGFRVSE-----KGITLVTRD 411
|
|
| UNIPROTKB|Q9KLP4 glgC2 "Glucose-1-phosphate adenylyltransferase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 142/409 (34%), Positives = 219/409 (53%)
Query: 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLN 154
++IL GG G+RL PLT RAKPAVP GG YR+ID ++NC++SG+++I +LTQ+ S SL+
Sbjct: 6 AVILAGGMGSRLSPLTDDRAKPAVPFGGKYRIIDFTLTNCLHSGLRRILVLTQYKSHSLH 65
Query: 155 RHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMF--EDAKHRN 212
+H+ +++ + G+ F+ V+ R+G GK W++GTADA+ +W+ DAK+
Sbjct: 66 KHLRNGWSIFNP-ELGE-FITVVPPQMRKG--GK-WYEGTADALFHNMWLLARSDAKY-- 118
Query: 213 IENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQF 272
+++LSGDH+YRMDY ++ HI+ +++ C+ V AS FG+M ID+ RI F
Sbjct: 119 ---VVVLSGDHIYRMDYAAMLEEHISKNATLTIACMQVPRHEASAFGVMAIDDDSRITCF 175
Query: 273 LEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP---EAN 329
+EKP D + + +ASMGIY+F +VL K L ++
Sbjct: 176 VEKPA---------DPPCIPNRPDHS-----LASMGIYIFNMDVLKKALTEDAEIEQSSH 221
Query: 330 DFGSEVIPMATKDFNVQAYLF--------ND-YWEDIGTIKSFFDANLSLTDKPPKFHFY 380
DFG +VIP +V AY F D YW D+GTI SF+DAN+ L P + Y
Sbjct: 222 DFGKDVIPKLIATGSVFAYSFCSGKGRVARDCYWRDVGTIDSFYDANMDLLQPVPPMNLY 281
Query: 381 DPQKPIFTSPRFLPPSKIEKCRVQD------SIISHGCFLRECSVEHSIVGIRSRLEYGV 434
I T + PP++ + SII++G SV+HSI+ V
Sbjct: 282 QKNWAIRTYEQQYPPARTVSSATGNEGIFINSIIANGVINSGGSVQHSIISSN------V 335
Query: 435 ELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKI 483
+ D+ ++ + ++L + V +G K+ +CIIDK+ KI
Sbjct: 336 RINDSALI----------VDSILFDD---VEVGEGCKLIHCIIDKHVKI 371
|
|
| TIGR_CMR|VC_A0699 VC_A0699 "glucose-1-phosphate adenylyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 142/409 (34%), Positives = 219/409 (53%)
Query: 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLN 154
++IL GG G+RL PLT RAKPAVP GG YR+ID ++NC++SG+++I +LTQ+ S SL+
Sbjct: 6 AVILAGGMGSRLSPLTDDRAKPAVPFGGKYRIIDFTLTNCLHSGLRRILVLTQYKSHSLH 65
Query: 155 RHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMF--EDAKHRN 212
+H+ +++ + G+ F+ V+ R+G GK W++GTADA+ +W+ DAK+
Sbjct: 66 KHLRNGWSIFNP-ELGE-FITVVPPQMRKG--GK-WYEGTADALFHNMWLLARSDAKY-- 118
Query: 213 IENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQF 272
+++LSGDH+YRMDY ++ HI+ +++ C+ V AS FG+M ID+ RI F
Sbjct: 119 ---VVVLSGDHIYRMDYAAMLEEHISKNATLTIACMQVPRHEASAFGVMAIDDDSRITCF 175
Query: 273 LEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP---EAN 329
+EKP D + + +ASMGIY+F +VL K L ++
Sbjct: 176 VEKPA---------DPPCIPNRPDHS-----LASMGIYIFNMDVLKKALTEDAEIEQSSH 221
Query: 330 DFGSEVIPMATKDFNVQAYLF--------ND-YWEDIGTIKSFFDANLSLTDKPPKFHFY 380
DFG +VIP +V AY F D YW D+GTI SF+DAN+ L P + Y
Sbjct: 222 DFGKDVIPKLIATGSVFAYSFCSGKGRVARDCYWRDVGTIDSFYDANMDLLQPVPPMNLY 281
Query: 381 DPQKPIFTSPRFLPPSKIEKCRVQD------SIISHGCFLRECSVEHSIVGIRSRLEYGV 434
I T + PP++ + SII++G SV+HSI+ V
Sbjct: 282 QKNWAIRTYEQQYPPARTVSSATGNEGIFINSIIANGVINSGGSVQHSIISSN------V 335
Query: 435 ELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKI 483
+ D+ ++ + ++L + V +G K+ +CIIDK+ KI
Sbjct: 336 RINDSALI----------VDSILFDD---VEVGEGCKLIHCIIDKHVKI 371
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| B2IUY3 | GLGC_NOSP7 | 2, ., 7, ., 7, ., 2, 7 | 0.6086 | 0.8117 | 0.9953 | yes | no |
| P12300 | GLGL3_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.6136 | 0.8422 | 0.886 | N/A | no |
| Q00081 | GLGL1_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.7062 | 0.8460 | 0.9468 | N/A | no |
| B8HM61 | GLGC_CYAP4 | 2, ., 7, ., 7, ., 2, 7 | 0.5743 | 0.8117 | 0.9953 | yes | no |
| B1XLF1 | GLGC_SYNP2 | 2, ., 7, ., 7, ., 2, 7 | 0.5778 | 0.7870 | 0.9650 | yes | no |
| P55242 | GLGL2_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.7270 | 0.8650 | 0.8766 | N/A | no |
| P55243 | GLGL3_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.6817 | 0.8403 | 0.9151 | N/A | no |
| P55241 | GLGL1_MAIZE | 2, ., 7, ., 7, ., 2, 7 | 0.5835 | 0.8707 | 0.8875 | N/A | no |
| P52415 | GLGC_SYNY3 | 2, ., 7, ., 7, ., 2, 7 | 0.5720 | 0.8117 | 0.9726 | N/A | no |
| Q3MBJ4 | GLGC_ANAVT | 2, ., 7, ., 7, ., 2, 7 | 0.5926 | 0.8117 | 0.9953 | yes | no |
| A5GLA9 | GLGC_SYNPW | 2, ., 7, ., 7, ., 2, 7 | 0.5547 | 0.8136 | 0.9930 | yes | no |
| P12299 | GLGL2_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.6404 | 0.8403 | 0.8467 | N/A | no |
| P55233 | GLGL1_BETVU | 2, ., 7, ., 7, ., 2, 7 | 0.7290 | 0.8631 | 0.8697 | N/A | no |
| P55232 | GLGS_BETVU | 2, ., 7, ., 7, ., 2, 7 | 0.5182 | 0.8250 | 0.8875 | N/A | no |
| P55230 | GLGL2_ARATH | 2, ., 7, ., 7, ., 2, 7 | 0.7165 | 0.9239 | 0.9382 | yes | no |
| Q5N3K9 | GLGC_SYNP6 | 2, ., 7, ., 7, ., 2, 7 | 0.5835 | 0.8136 | 0.9953 | yes | no |
| P55234 | GLGL2_MAIZE | 2, ., 7, ., 7, ., 2, 7 | 0.6155 | 0.8707 | 0.8790 | N/A | no |
| P30524 | GLGL1_HORVU | 2, ., 7, ., 7, ., 2, 7 | 0.6426 | 0.8403 | 0.8451 | N/A | no |
| B7KDB8 | GLGC_CYAP7 | 2, ., 7, ., 7, ., 2, 7 | 0.5926 | 0.8117 | 0.9953 | yes | no |
| P30521 | GLGC_NOSS1 | 2, ., 7, ., 7, ., 2, 7 | 0.5926 | 0.8117 | 0.9953 | yes | no |
| B7K5U7 | GLGC_CYAP8 | 2, ., 7, ., 7, ., 2, 7 | 0.5720 | 0.8117 | 0.9953 | yes | no |
| Q31QN4 | GLGC_SYNE7 | 2, ., 7, ., 7, ., 2, 7 | 0.5835 | 0.8136 | 0.9953 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| fgenesh4_pm.C_LG_XIV000240 | glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP (By similarity) (445 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| gw1.XV.361.1 | hypothetical protein (586 aa) | • | • | • | • | 0.970 | |||||
| gw1.164.92.1 | hypothetical protein (387 aa) | • | • | • | • | 0.960 | |||||
| gw1.XVII.1126.1 | hypothetical protein (688 aa) | • | • | • | • | 0.952 | |||||
| estExt_fgenesh4_pg.C_LG_IX1158 | hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (853 aa) | • | • | • | • | 0.943 | |||||
| estExt_Genewise1_v1.C_LG_IV2986 | hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (819 aa) | • | • | • | • | 0.943 | |||||
| estExt_Genewise1_v1.C_LG_IV0101 | hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (950 aa) | • | • | • | • | 0.935 | |||||
| estExt_fgenesh4_pg.C_LG_XV1054 | phosphoglucomutase (EC-5.4.2.2) (551 aa) | • | • | 0.908 | |||||||
| eugene3.00121193 | phosphoglucomutase (EC-5.4.2.2) (631 aa) | • | • | 0.907 | |||||||
| estExt_fgenesh4_pm.C_LG_VIII0571 | phosphoglucomutase (EC-5.4.2.2) (582 aa) | • | • | 0.907 | |||||||
| estExt_fgenesh4_pg.C_LG_X0989 | phosphoglucomutase (EC-5.4.2.2) (582 aa) | • | • | 0.907 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 526 | |||
| PLN02241 | 436 | PLN02241, PLN02241, glucose-1-phosphate adenylyltr | 0.0 | |
| PRK02862 | 429 | PRK02862, glgC, glucose-1-phosphate adenylyltransf | 0.0 | |
| TIGR02091 | 361 | TIGR02091, glgC, glucose-1-phosphate adenylyltrans | 1e-175 | |
| COG0448 | 393 | COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb | 1e-148 | |
| PRK00844 | 407 | PRK00844, glgC, glucose-1-phosphate adenylyltransf | 1e-119 | |
| PRK00725 | 425 | PRK00725, glgC, glucose-1-phosphate adenylyltransf | 1e-116 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 4e-97 | |
| pfam00483 | 247 | pfam00483, NTP_transferase, Nucleotidyl transferas | 1e-90 | |
| cd02508 | 200 | cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory | 4e-75 | |
| COG1208 | 358 | COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph | 2e-39 | |
| cd04181 | 217 | cd04181, NTP_transferase, NTP_transferases catalyz | 3e-37 | |
| TIGR02092 | 369 | TIGR02092, glgD, glucose-1-phosphate adenylyltrans | 3e-34 | |
| cd04651 | 104 | cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly | 3e-31 | |
| COG1209 | 286 | COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel | 1e-17 | |
| cd06915 | 223 | cd06915, NTP_transferase_WcbM_like, WcbM_like is a | 2e-17 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 2e-16 | |
| cd06426 | 220 | cd06426, NTP_transferase_like_2, NTP_trnasferase_l | 3e-16 | |
| TIGR01208 | 353 | TIGR01208, rmlA_long, glucose-1-phosphate thymidyl | 3e-15 | |
| TIGR03992 | 393 | TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph | 3e-15 | |
| cd02538 | 240 | cd02538, G1P_TT_short, G1P_TT_short is the short f | 6e-10 | |
| cd02507 | 216 | cd02507, eIF-2B_gamma_N_like, The N-terminal of eI | 8e-08 | |
| cd04198 | 214 | cd04198, eIF-2B_gamma_N, The N-terminal domain of | 3e-07 | |
| TIGR01207 | 286 | TIGR01207, rmlA, glucose-1-phosphate thymidylyltra | 2e-06 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 2e-05 | |
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 5e-05 | |
| cd06422 | 221 | cd06422, NTP_transferase_like_1, NTP_transferase_l | 8e-05 | |
| cd02523 | 229 | cd02523, PC_cytidylyltransferase, Phosphocholine c | 8e-05 | |
| cd03356 | 79 | cd03356, LbH_G1P_AT_C_like, Left-handed parallel b | 5e-04 | |
| cd02540 | 229 | cd02540, GT2_GlmU_N_bac, N-terminal domain of bact | 0.001 | |
| PRK15480 | 292 | PRK15480, PRK15480, glucose-1-phosphate thymidylyl | 0.002 | |
| cd02541 | 267 | cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca | 0.004 |
| >gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 893 bits (2309), Expect = 0.0
Identities = 331/438 (75%), Positives = 387/438 (88%), Gaps = 3/438 (0%)
Query: 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFN 149
PK+VA+IILGGGAGTRLFPLT RRAKPAVPIGG YRLID+PMSNCINSGI KIY+LTQFN
Sbjct: 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFN 60
Query: 150 SQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAK 209
S SLNRH+SR YN G+G NFGDGFVEVLAATQ GE G WFQGTADAVRQF+W+FEDAK
Sbjct: 61 SASLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEKG--WFQGTADAVRQFLWLFEDAK 118
Query: 210 HRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRI 269
++N+E +LILSGDHLYRMDYMDFVQ H SG DI++ CLPVDESRASDFGLMKID+TGRI
Sbjct: 119 NKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRI 178
Query: 270 RQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAN 329
+F EKPKG+ L++MQ+DTT LGLS +EA+ PYIASMGIY+FK +VLLK+LRW +P AN
Sbjct: 179 IEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238
Query: 330 DFGSEVIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFT 388
DFGSE+IP A K+ +NVQAYLF+ YWEDIGTIKSF++ANL+LT +PPKF FYDP PI+T
Sbjct: 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYT 298
Query: 389 SPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQ 448
SPRFLPPSKIE CR+ DSIISHGCFLREC +EHS+VG+RSR+ GVE++DT+MMGADYY+
Sbjct: 299 SPRFLPPSKIEDCRITDSIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYE 358
Query: 449 TEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIR 508
TE EIA+LLAEGKVP+GIG +TKI+N IIDKNA+IGKNV+I NKDGV+EA+R +G+YIR
Sbjct: 359 TEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIR 418
Query: 509 SGITVVLKNTTIKDGTII 526
SGI V+LKN I DGT+I
Sbjct: 419 SGIVVILKNAVIPDGTVI 436
|
Length = 436 |
| >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 721 bits (1864), Expect = 0.0
Identities = 257/437 (58%), Positives = 325/437 (74%), Gaps = 10/437 (2%)
Query: 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNS 150
K V +IILGGGAGTRL+PLT RAKPAVP+ G YRLID+P+SNCINSGI KIY+LTQFNS
Sbjct: 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNS 61
Query: 151 QSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKH 210
SLNRHIS+TYN F GFVEVLAA +Q WFQGTADAVR+++W F++
Sbjct: 62 ASLNRHISQTYNFD---GFSGGFVEVLAA--QQTPENPSWFQGTADAVRKYLWHFQE--- 113
Query: 211 RNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIR 270
+++ LILSGD LYRMDY FVQHH +G DI++ LPVDE AS FGLMK D+ GRI
Sbjct: 114 WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRIT 173
Query: 271 QFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAND 330
+F EKPKG+ L++M +DT+ LGLS +EA+ PY+ASMGIY+F +VL +L PE D
Sbjct: 174 EFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLN-KNPEYTD 232
Query: 331 FGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKP-PKFHFYDPQKPIFTS 389
FG E+IP A +D+ VQ+YLF+ YWEDIGTI++F++ANL+LT +P P F FYD + PI+T
Sbjct: 233 FGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTR 292
Query: 390 PRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQT 449
R+LPPSK+ + +SII+ GC ++ CS+ HS++GIRSR+E G ++DT++MGAD+Y++
Sbjct: 293 ARYLPPSKLLDATITESIIAEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYES 352
Query: 450 EAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRS 509
E L EGK P+GIG T IK IIDKNA+IG NV I NKD VEEA+R GFYIR
Sbjct: 353 SEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRD 412
Query: 510 GITVVLKNTTIKDGTII 526
GI VV+KN I DGT+I
Sbjct: 413 GIVVVVKNAVIPDGTVI 429
|
Length = 429 |
| >gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 497 bits (1281), Expect = e-175
Identities = 181/403 (44%), Positives = 249/403 (61%), Gaps = 48/403 (11%)
Query: 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLN 154
+++L GG G+RL PLT RRAKPAVP GG YR+ID P+SNCINSGI++I +LTQ+ S SLN
Sbjct: 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLN 60
Query: 155 RHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIE 214
RHI R ++ F DGFV +L A QR ESG W+QGTADAV Q + + ED + E
Sbjct: 61 RHIQRGWDFD---GFIDGFVTLLPAQQR--ESGTDWYQGTADAVYQNLDLIEDY---DPE 112
Query: 215 NILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLE 274
+LILSGDH+Y+MDY + +HI SG D+++ C+PV AS FG+M++DE GRI F E
Sbjct: 113 YVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEE 172
Query: 275 KP-KGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW---HYPEAND 330
KP ++ M +ASMGIY+F +VL ++L ++D
Sbjct: 173 KPANPPSIPGMPD---------------FALASMGIYIFDKDVLKELLEEDADDPESSHD 217
Query: 331 FGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSP 390
FG ++IP A ++ +VQAYLF+ YW D+GTI SF++AN+ L P F YD + PI+T
Sbjct: 218 FGKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYN 277
Query: 391 RFLPPSKI--EKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQ 448
FLPP+K +V DS++S GC + +V HS++GIR R+ G ++D+++MG
Sbjct: 278 EFLPPAKFVDSDAQVVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD---- 333
Query: 449 TEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIAN 491
VGIGR I+N IIDKN +IG+ V+I N
Sbjct: 334 ---------------VGIGRGAVIRNAIIDKNVRIGEGVVIGN 361
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361 |
| >gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 431 bits (1110), Expect = e-148
Identities = 167/442 (37%), Positives = 244/442 (55%), Gaps = 56/442 (12%)
Query: 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFN 149
K V +IIL GG G+RL PLT RAKPAVP GG YR+ID +SNC+NSGI++I +LTQ+
Sbjct: 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYK 62
Query: 150 SQSLNRHISRTYNLG-DGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDA 208
S SLN HI R + D N G V +L A QR+G G++W++GTADA+ Q + + +
Sbjct: 63 SHSLNDHIGRGWPWDLDRKN---GGVFILPAQQREG--GERWYEGTADAIYQNLLIIRRS 117
Query: 209 KHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGR 268
+ E +LILSGDH+Y+MDY D + HI SG D++V V AS FG+M +DE GR
Sbjct: 118 ---DPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGR 174
Query: 269 IRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA 328
I +F+EKP ++ +ASMGIY+F T++L ++L +
Sbjct: 175 IIEFVEKPADG----PPSNS---------------LASMGIYIFNTDLLKELLEEDAKDP 215
Query: 329 N---DFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKP 385
N DFG ++IP + V AY F+ YW D+GTI S+++AN+ L P+ + YD P
Sbjct: 216 NSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWP 275
Query: 386 IFTSPRFLPPSKIEKCR-VQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGA 444
I+T + LPP+K V +S+++ GC + +VE+S++ R+ G ++++++M
Sbjct: 276 IYTKNKNLPPAKFVNDSEVSNSLVAGGCII-SGTVENSVLFRGVRIGKGSVIENSVIMPD 334
Query: 445 DYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDG 504
V IG ++ IIDKN IG+ V+I E+ +R
Sbjct: 335 -------------------VEIGEGAVLRRAIIDKNVVIGEGVVIGGDKPEEDRKR---- 371
Query: 505 FYIRSGITVVLKNTTIKDGTII 526
F GI VV K IK +
Sbjct: 372 FRSEEGIVVVPKGMVIKLDIME 393
|
Length = 393 |
| >gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 357 bits (919), Expect = e-119
Identities = 154/449 (34%), Positives = 226/449 (50%), Gaps = 68/449 (15%)
Query: 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQS 152
V +I+L GG G RL PLT RAKPAVP GG YRLID +SN +NSG +IY+LTQ+ S S
Sbjct: 6 VLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHS 65
Query: 153 LNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRN 212
L+RHIS+T+ L ++ + A QR GK+W+ G+ADA+ Q + + ED
Sbjct: 66 LDRHISQTWRLS---GLLGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIEDEDP-- 117
Query: 213 IENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQF 272
+ +++ DH+YRMD V HI SG ++V + V AS FG++++D GRIR F
Sbjct: 118 -DYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGF 176
Query: 273 LEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW---HYPEAN 329
LEKP D L EA +ASMG Y+F T+ L+ LR ++
Sbjct: 177 LEKPA---------DPPGLPDDPDEA-----LASMGNYVFTTDALVDALRRDAADEDSSH 222
Query: 330 DFGSEVIPMATKDFNVQAYLFND------------YWEDIGTIKSFFDANLSLTDKPPKF 377
D G ++IP + Y F+ YW D+GTI +++DA++ L P F
Sbjct: 223 DMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVF 282
Query: 378 HFYDPQKPIFTSPRFLPPSKI-----EKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEY 432
+ Y+ + PI+TS LPP+K QDS++S G + +V +S++ +E
Sbjct: 283 NLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVES 342
Query: 433 GVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANK 492
G E++D+++M V IGR ++ I+DKN + I
Sbjct: 343 GAEVEDSVLMDG-------------------VRIGRGAVVRRAILDKNVVVPPGATI--- 380
Query: 493 DGVEEAERPSDGFYI-RSGITVVLKNTTI 520
GV + E F + GI VV K +
Sbjct: 381 -GV-DLEEDRRRFTVSEGGIVVVPKGQRV 407
|
Length = 407 |
| >gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 349 bits (898), Expect = e-116
Identities = 155/454 (34%), Positives = 234/454 (51%), Gaps = 85/454 (18%)
Query: 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNS 150
+A +IL GG G+RL LT +RAKPAV GG +R+ID +SNCINSGI++I +LTQ+ +
Sbjct: 15 DTLA-LILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKA 73
Query: 151 QSLNRHISRTYNLGDGMNFGDG----FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFE 206
SL RHI R G +F FV++L A QR E W++GTADAV Q + +
Sbjct: 74 HSLIRHIQR------GWSFFREELGEFVDLLPAQQRVDEE--NWYRGTADAVYQNLDIIR 125
Query: 207 DAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDET 266
+ + ++IL+GDH+Y+MDY + H+ SG D +V CL V AS FG+M +DE
Sbjct: 126 ---RYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDEN 182
Query: 267 GRIRQFLEKPKGENLRSMQID-TTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHY 325
RI F+EKP N +M D +L ASMGIY+F + L ++L
Sbjct: 183 DRITAFVEKPA--NPPAMPGDPDKSL-------------ASMGIYVFNADYLYELLE--- 224
Query: 326 PEAN------DFGSEVIPMATKDFNVQAYLFND-----------YWEDIGTIKSFFDANL 368
+A DFG ++IP ++ V A+ F+D YW D+GT+ +++ ANL
Sbjct: 225 EDAEDPNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANL 284
Query: 369 SLTDKPPKFHFYDPQKPIFTSPRFLPPSKI----EKCRVQ--DSIISHGCFLRECSVEHS 422
L P+ YD PI+T LPP+K R +S++S GC + V S
Sbjct: 285 DLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSGGCIISGAVVRRS 344
Query: 423 IVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVP-VGIGRDTKIKNCIIDKNA 481
++ R R+ ++D++++ P V +GR +++ C+ID+
Sbjct: 345 VLFSRVRVNSFSNVEDSVLL--------------------PDVNVGRSCRLRRCVIDRGC 384
Query: 482 KIGKNVIIANKDGVEEAERPSDGFYI-RSGITVV 514
I + ++I +D E+A+R F GI +V
Sbjct: 385 VIPEGMVIG-EDPEEDAKR----FRRSEEGIVLV 413
|
Length = 425 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 299 bits (767), Expect = 4e-97
Identities = 152/445 (34%), Positives = 218/445 (48%), Gaps = 76/445 (17%)
Query: 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNS 150
K + ++IL GG GTRL LT AKPAVP GG YR+ID +SNC NSGI + +LTQ+
Sbjct: 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQP 61
Query: 151 QSLNRHISRTYNLGDGMNFG----DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFE 206
LN HI G G + +G V +L G KW++GTA A+ Q I +
Sbjct: 62 LELNNHI------GIGSPWDLDRINGGVTILPPY--SESEGGKWYKGTAHAIYQNIDYID 113
Query: 207 DAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDET 266
+ E +LILSGDH+Y+MDY + +H D+++ + V AS FG+M DE
Sbjct: 114 QY---DPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDEN 170
Query: 267 GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP 326
RI +F EKPK N +S +ASMGIY+F + L + L
Sbjct: 171 MRIVEFEEKPK--NPKSN-------------------LASMGIYIFNWKRLKEYLIEDEK 209
Query: 327 EAN---DFGSEVIP-MATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDP 382
N DFG VIP + + AY F YW+D+GTI+S ++AN+ L + +D
Sbjct: 210 NPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDR 269
Query: 383 QKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMM 441
I++ LPP I E +V++S++ GC + +VEHS++ ++ G +KD+++
Sbjct: 270 NWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVV-YGTVEHSVLFQGVQVGEGSVVKDSVI 328
Query: 442 MGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERP 501
M A+ IG + I+ II +NA IG VII V
Sbjct: 329 M------PGAK-------------IGENVVIERAIIGENAVIGDGVIIGGGKEV------ 363
Query: 502 SDGFYIRSGITVVLKNTTIKDGTII 526
ITV+ +N I GT+I
Sbjct: 364 ---------ITVIGENEVIGVGTVI 379
|
Length = 380 |
| >gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase | Back alignment and domain information |
|---|
Score = 277 bits (710), Expect = 1e-90
Identities = 88/283 (31%), Positives = 129/283 (45%), Gaps = 45/283 (15%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKK-IYILTQFNSQSLN 154
IIL GG+GTRL+PLT AKP VP+ Y +I +S +N+GI++ I I TQ + +
Sbjct: 3 IILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFLVA 62
Query: 155 RHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIE 214
+ G ++V A Q + GTA AV D E
Sbjct: 63 EQLGDGSKFG---------LQVTYALQPEPR-------GTAPAVALAADFLGDDDP---E 103
Query: 215 NILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLE 274
+L+L GDH+YRMD+ + VQ D +V V + +G+++ DE GR+ +F+E
Sbjct: 104 LVLVLGGDHIYRMDFEEAVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDENGRVIRFVE 163
Query: 275 KPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLR--WHYPEANDFG 332
KP ASMGIY F + V L + + D
Sbjct: 164 KPDLPKA--------------------SNYASMGIYFFNSGVFLFLAKYLKELARGEDEI 203
Query: 333 SEVIPMATKDFNVQ-AYLFND--YWEDIGTIKSFFDANLSLTD 372
++ IP A +D ++ A+LF YW D+GT S ++ANL L
Sbjct: 204 TDAIPAALEDGDLDLAFLFRGYAYWSDVGTWDSLWEANLKLLT 246
|
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 |
| >gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 4e-75
Identities = 94/263 (35%), Positives = 130/263 (49%), Gaps = 65/263 (24%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
IIL GG GTRL PLT +RAKPAVP GG YRLID P+SN +NSGI+ + +LTQ+ S+SLN
Sbjct: 2 IILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLND 61
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
H+ ++ +G + +L QR+G W++GTADA+ Q + E + E
Sbjct: 62 HLGSGKEW--DLDRKNGGLFILPPQQRKGGD---WYRGTADAIYQNLDYIERSDP---EY 113
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEK 275
+LILSGDH+Y MDY + + HI SG DI+V
Sbjct: 114 VLILSGDHIYNMDYREMLDFHIESGADITVVY---------------------------- 145
Query: 276 PKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHY-PEANDFGSE 334
SM I Y+F ++L+++L ++DFG +
Sbjct: 146 -----KASMGI-----------------------YIFSKDLLIELLEEDAADGSHDFGKD 177
Query: 335 VIPMATKDFNVQAYLFNDYWEDI 357
+IP K + AY FN YW DI
Sbjct: 178 IIPAMLKKLKIYAYEFNGYWADI 200
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200 |
| >gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 2e-39
Identities = 97/399 (24%), Positives = 165/399 (41%), Gaps = 78/399 (19%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
+IL GG GTRL PLT R KP +PI G LI+ + +G+++I ++ + + +
Sbjct: 5 VILAGGYGTRLRPLTDDRPKPLLPIAG-KPLIEYVLEALAAAGVEEIVLVVGYLGEQIEE 63
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ LG + + + E GTA A++ + ++
Sbjct: 64 YFGDGEGLGVRITYVV-----------EKEP-----LGTAGALKNAL------DLLGGDD 101
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDE-TGRIRQFLE 274
L+L+GD L +D + ++ H G S+FG+++ D+ GR+ +F E
Sbjct: 102 FLVLNGDVLTDLDLSELLEFHKKKGALA--TIALTRVLDPSEFGVVETDDGDGRVVEFRE 159
Query: 275 KPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSE 334
KP E + + GIY+F EV + E DF E
Sbjct: 160 KPGPEEP-------------------PSNLINAGIYIFDPEV-FDYIE--KGERFDFEEE 197
Query: 335 VIP-MATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFL 393
++P +A K +V Y+F YW DIGT + +AN L K P PI +
Sbjct: 198 LLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKS----PLGPIEEPVVII 253
Query: 394 PPSKIEKCRVQDSIISHGCFLRECSV--EHSIVGIRSRLEYGVELKDTMMMGADYYQTEA 451
+ I +I G + ++ ++++G + GVE+K++++M
Sbjct: 254 RSAYIIG----PVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIM--------- 300
Query: 452 EIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIA 490
+ V IG + I + II +N KIG ++II
Sbjct: 301 -------DNVV---IGHGSYIGDSIIGENCKIGASLIIG 329
|
Length = 358 |
| >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 3e-37
Identities = 70/263 (26%), Positives = 117/263 (44%), Gaps = 47/263 (17%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
+IL G GTRL PLT R KP +PI G +++ + +GI +I ++ + + +
Sbjct: 2 VILAAGKGTRLRPLTDTRPKPLLPIAG-KPILEYIIERLARAGIDEIILVVGYLGEQIEE 60
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ GDG FG V Q E GTA AVR D ++
Sbjct: 61 Y------FGDGSKFGVNIEYV-----VQEE-----PLGTAGAVRNAEDFLGD------DD 98
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEK 275
L+++GD L +D + ++ H G D ++ V+ S +G++++D+ GR+ +F+EK
Sbjct: 99 FLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DPSRYGVVELDDDGRVTRFVEK 156
Query: 276 PKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSEV 335
P +A+ GIY+F+ E+ L + P D ++
Sbjct: 157 PTLPE---------------------SNLANAGIYIFEPEI-LDYIPEILPRGEDELTDA 194
Query: 336 IPMATKDFNVQAYLFNDYWEDIG 358
IP+ ++ V Y + YW DIG
Sbjct: 195 IPLLIEEGKVYGYPVDGYWLDIG 217
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 |
| >gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 3e-34
Identities = 106/415 (25%), Positives = 176/415 (42%), Gaps = 106/415 (25%)
Query: 106 LFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNS-QSLNRHISRTYNLG 164
L PLT R ++P GG YRLID P+SN +N+GI+ ++I + QSL H+
Sbjct: 16 LSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLG------ 69
Query: 165 DGMNFGDGFVEVLAATQRQGESGKKW-FQGTADAVRQFIWMFED----AKHRNI------ 213
SG++W D + F + D R
Sbjct: 70 ---------------------SGREWDLHRKRDGLFVFPYNDRDDLSEGGKRYFSQNLEF 108
Query: 214 ------ENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKI-DET 266
E ++L+ + +D +++H +G DI+V V + AS++ + DE+
Sbjct: 109 LKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDES 168
Query: 267 GR---IRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW 323
G+ I Q L + EN+ S+ IY+ T++L+++L
Sbjct: 169 GKVKSIGQNLNPEEEENI------------------------SLDIYIVSTDLLIELLY- 203
Query: 324 HYPEANDFG-----SEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFH 378
E G E+I K+ N+ AY + Y +I ++KS++ AN+ L D P F
Sbjct: 204 ---ECIQRGKLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLD-PQNFQ 259
Query: 379 --FYDPQKPIFTSPRFLPPSK-IEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVE 435
FY Q PI+T + PP+ E +V++S++++GC + E VE+SI+ +
Sbjct: 260 SLFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCII-EGKVENSILSRGVHVGKDAL 318
Query: 436 LKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIA 490
+K+ ++M I G ++N IIDK+ I NV IA
Sbjct: 319 IKNCIIM------QRTVI-------------GEGAHLENVIIDKDVVIEPNVKIA 354
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 369 |
| >gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 3e-31
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 23/127 (18%)
Query: 394 PPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEI 453
PP + V++S++S GC + +VE+S++ R+ G ++D+++M
Sbjct: 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN--------- 51
Query: 454 AALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITV 513
VGIGR+ I+ IIDKN I V+I + A + GI V
Sbjct: 52 ----------VGIGRNAVIRRAIIDKNVVIPDGVVIGGDPEEDRAR----FYVTEDGIVV 97
Query: 514 VLKNTTI 520
V K I
Sbjct: 98 VGKGMVI 104
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104 |
| >gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 1e-17
Identities = 68/288 (23%), Positives = 117/288 (40%), Gaps = 75/288 (26%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
+IL GG+GTRL PLT K +P+ +I P+ + +GI+ I I+ + +
Sbjct: 4 VILAGGSGTRLRPLTRVVPKQLLPVYD-KPMIYYPLETLMLAGIRDILIVVGPEDKPTFK 62
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAV---RQFIWMFEDAKHRN 212
+ LGDG +FG V++ A Q + + G A AV F+
Sbjct: 63 EL-----LGDGSDFG---VDITYAVQPEPD-------GLAHAVLIAEDFV---------G 98
Query: 213 IENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQF 272
++ ++ GD++++ + ++H G ++ VD+ +G+++ DE G++
Sbjct: 99 DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSR--YGVVEFDEDGKVIGL 156
Query: 273 LEKPK--GENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVL--LKVLRWHYP-- 326
EKPK NL A G+Y + V +K ++ P
Sbjct: 157 EEKPKEPKSNL-----------------------AVTGLYFYDPSVFEAIKQIK---PSA 190
Query: 327 -------EANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDAN 367
+A D K + V A L +W D GT +S +AN
Sbjct: 191 RGELEITDAIDL------YIEKGYLVVAILIRGWWLDTGTPESLLEAN 232
|
Length = 286 |
| >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 2e-17
Identities = 58/273 (21%), Positives = 102/273 (37%), Gaps = 54/273 (19%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
+IL GG GTRL + KP P+ G ++ + GI +I + + ++ +
Sbjct: 2 VILAGGLGTRLRSVVKDLPKPLAPVAG-RPFLEYLLEYLARQGISRIVLSVGYLAEQIEE 60
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ FGDG+ + GT A++ +
Sbjct: 61 Y------------FGDGYRGGIRIYYVIEPE----PLGTGGAIKNA------LPKLPEDQ 98
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEK 275
L+L+GD + +D + + SG D ++ V + AS +G + +D GR+ F+E
Sbjct: 99 FLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYGNVTVDGDGRVIAFVE- 155
Query: 276 PKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSE- 334
KG I+ G+YL + E+L A+ F E
Sbjct: 156 -KGPGAAPGLING-------------------GVYLLRKEIL------AEIPADAFSLEA 189
Query: 335 -VIPMATKDFNVQAYLFNDYWEDIGTIKSFFDA 366
V+P K + + + Y+ DIG + + A
Sbjct: 190 DVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 2e-16
Identities = 75/290 (25%), Positives = 113/290 (38%), Gaps = 69/290 (23%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
+IL GG GTRL PLT R K +P+ G +I + + +GI+ I I+ + +
Sbjct: 4 LILAGGKGTRLRPLTYTRPKQLIPVAG-KPIIQYAIEDLREAGIEDIGIVVGPTGEEIKE 62
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAV---RQFIWMFEDAKHRN 212
LGDG FG +L Q E G A AV R F+
Sbjct: 63 A------LGDGSRFGVRITYIL-----QEEP-----LGLAHAVLAARDFL---------G 97
Query: 213 IENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQF 272
E ++ GD+L + V+ + D S+ V++ R FG+ +D+ GRI +
Sbjct: 98 DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPRR--FGVAVVDD-GRIVRL 154
Query: 273 LEKPKGE--NLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVL--LKVLRWHYPEA 328
+EKPK NL A +G+Y F + + L+ P
Sbjct: 155 VEKPKEPPSNL-----------------------ALVGVYAFTPAIFDAISRLK---PSW 188
Query: 329 NDFGSEVIPMATKDF-----NVQAYLFNDYWEDIGTIKSFFDANLSLTDK 373
G I A + V + +W+D GT + +AN L DK
Sbjct: 189 R--GELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLDK 236
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 3e-16
Identities = 65/278 (23%), Positives = 110/278 (39%), Gaps = 65/278 (23%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLN- 154
+I+ GG GTRL PLT KP + +GG +++ + I G + YI S+N
Sbjct: 2 VIMAGGKGTRLRPLTENTPKPMLKVGG-KPILETIIDRFIAQGFRNFYI-------SVNY 53
Query: 155 -RHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNI 213
+ Y GDG FG V K GTA A+ +
Sbjct: 54 LAEMIEDY-FGDGSKFGVNISYV--------REDKPL--GTAGALSLL-------PEKPT 95
Query: 214 ENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASD----FGLMKIDETGRI 269
+ L+++GD L ++Y + H + D +VC R + +G+++ + GRI
Sbjct: 96 DPFLVMNGDILTNLNYEHLLDFHKENNADATVCV------REYEVQVPYGVVETEG-GRI 148
Query: 270 RQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAN 329
EKP ++ + GIY+ + EVL + + + +
Sbjct: 149 TSIEEKPT-----------------------HSFLVNAGIYVLEPEVLDLIPKNEFFDMP 185
Query: 330 DFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDAN 367
D ++I + V + ++YW DIG + + AN
Sbjct: 186 DLIEKLI---KEGKKVGVFPIHEYWLDIGRPEDYEKAN 220
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 |
| >gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 3e-15
Identities = 81/417 (19%), Positives = 154/417 (36%), Gaps = 83/417 (19%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
+IL G GTRL PLT R K +P+ ++ + + +GI I I+ + +
Sbjct: 3 LILAAGKGTRLRPLTFTRPKQLIPVAN-KPILQYAIEDLAEAGITDIGIVVGPVTGEEIK 61
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
I +G+G FG ++ QGE G A AV D ++
Sbjct: 62 EI-----VGEGERFGAKITYIV-----QGEP-----LGLAHAVYTARDFLGD------DD 100
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEK 275
++ GD+L + FV+ D + V + A FG+ +++ RI + +EK
Sbjct: 101 FVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTA--FGVAVLEDGKRILKLVEK 158
Query: 276 PKG--ENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAN---D 330
PK NL A +G+Y+F+ ++ + ++ P +
Sbjct: 159 PKEPPSNL-----------------------AVVGLYMFR-PLIFEAIKNIKPSWRGELE 194
Query: 331 FGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDK-PPKFHFYDPQKPIFTS 389
+ + K + V +W+D G + DAN + D+ + D + I
Sbjct: 195 ITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQGVDDESKIRGR 254
Query: 390 PRFLPPSKIEKCRVQD-SIISHGCFLRECSVEH-SIVGIRSRLEYGVELKDTMMMGADYY 447
+KI ++ ++I C + + + +G + E++ ++++
Sbjct: 255 VVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDA-EVEHSIVL----- 308
Query: 448 QTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKN--------VIIANKDGVE 496
E+ I G +I + +I K +I N + I + VE
Sbjct: 309 -DESVI------------EGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352
|
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353 |
| >gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 3e-15
Identities = 74/284 (26%), Positives = 119/284 (41%), Gaps = 63/284 (22%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
+IL G GTR+ PLT R KP +P+ G L++ + ++GI + + + +
Sbjct: 4 VILAAGKGTRMRPLTETRPKPMLPVAG-KPLLEHIIEALRDAGIDDFVFVVGYGKEKVRE 62
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ GDG G V + Q + GTADA+ AK +
Sbjct: 63 YF------GDGSRGG---VPIEYVVQEEQL-------GTADALGS-------AKEYVDDE 99
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEK 275
L+L+GD L D ++ + I + ++ + VD+ SD+G+++ D GR+ +EK
Sbjct: 100 FLVLNGDVLLDSDLLERL---IRAEAP-AIAVVEVDD--PSDYGVVETDG-GRVTGIVEK 152
Query: 276 PKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEV--LLKVL----RWHYPEAN 329
P EN S I+ GIYLF E+ LL+ R Y E
Sbjct: 153 P--ENPPSNLINA-------------------GIYLFSPEIFELLEKTKLSPRGEY-ELT 190
Query: 330 DFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDK 373
D + + + V+A + +W D+G DAN +L D
Sbjct: 191 D----ALQLLIDEGKVKAVELDGFWLDVGRPWDLLDANEALLDN 230
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393 |
| >gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 6e-10
Identities = 68/286 (23%), Positives = 114/286 (39%), Gaps = 69/286 (24%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
IIL GG+GTRL+PLT +K +P+ +I P+S + +GI++I I++
Sbjct: 4 IILAGGSGTRLYPLTKVVSKQLLPVYD-KPMIYYPLSTLMLAGIREILIIST------PE 56
Query: 156 HISRTYNL-GDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAV---RQFIWMFEDAKHR 211
+ L GDG + G + + A Q + G A A +FI
Sbjct: 57 DLPLFKELLGDGSDLG---IRITYAVQPKPG-------GLAQAFIIGEEFI--------- 97
Query: 212 NIENILILSGDHLYR-MDYMDFVQHHINSGGDISVCCLPV-DESRASDFGLMKIDETGRI 269
+ + ++ GD+++ +Q +V V D R +G+++ DE GR+
Sbjct: 98 GDDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPER---YGVVEFDENGRV 154
Query: 270 RQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEV--LLKVLRWHYP- 326
EKPK +S N+ A G+Y + +V + K L+ P
Sbjct: 155 LSIEEKPK--KPKS----------------NY---AVTGLYFYDNDVFEIAKQLK---PS 190
Query: 327 -----EANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDAN 367
E D +E + + F W D GT +S +A+
Sbjct: 191 ARGELEITDVNNEYLEKGKLSVELLGRGF--AWLDTGTHESLLEAS 234
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240 |
| >gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 8e-08
Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 20/128 (15%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
++L G G+R PLT K +P+ LID + +G+++++++ +SQ++
Sbjct: 4 VVLADGFGSRFLPLTSDIPKALLPVANVP-LIDYTLEWLEKAGVEEVFVVCCEHSQAIIE 62
Query: 156 HI-SRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIE 214
H+ ++ D L + G A +R D +
Sbjct: 63 HLLKSKWSSLSSKMIVDVITSDLC---------ESA--GDALRLR-------DIRGLIRS 104
Query: 215 NILILSGD 222
+ L+LS D
Sbjct: 105 DFLLLSCD 112
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216 |
| >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 20/127 (15%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
+IL GG G+RL+PLT K +P+ +I P+ +G + + ++ Q+
Sbjct: 4 VILAGGGGSRLYPLTDNIPKALLPVAN-KPMIWYPLDWLEKAGFEDVIVVVPEEEQAEIS 62
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
R++ L + + GTAD++R K ++
Sbjct: 63 TYLRSFPLN---LKQKLDEVTIV-------LDEDM--GTADSLRHI------RKKIK-KD 103
Query: 216 ILILSGD 222
L+LS D
Sbjct: 104 FLVLSCD 110
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 |
| >gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 29/185 (15%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYR--LIDVPMSNCINSGIKKIYILTQFNSQSL 153
IIL GG+GTRL+P+T +K +PI Y +I P+S + +GI+ I I++
Sbjct: 3 IILAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 59
Query: 154 NRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNI 213
+ + LGDG +G V + A Q + G A A FI + ED
Sbjct: 60 FQQL-----LGDGSQWG---VNLSYAVQPSPD-------GLAQA---FI-IGED--FIGG 98
Query: 214 ENILILSGDHL-YRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQF 272
+ ++ GD++ Y D D ++ +V V + +G+++ D GR
Sbjct: 99 DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPER--YGVVEFDSNGRAISI 156
Query: 273 LEKPK 277
EKP
Sbjct: 157 EEKPA 161
|
Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-05
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 466 IGRDTKIKNCIIDKNAKIGKNVIIANK---DGVEEAERPSDGFYIRSGI----TVVLKNT 518
IG T IKN +I +N KIGKNV+I N D V DG I I V+ K
Sbjct: 8 IGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDV----TIEDGCTIHHSIVADGAVIGKGC 63
Query: 519 TIKDGTII 526
TI G++I
Sbjct: 64 TIPPGSLI 71
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 28/134 (20%)
Query: 231 DFVQHHINSGGDISVCCLPVDESRASDFGLMKIDE-TGRIRQFLEKPKGENLRSMQIDTT 289
+ + H G + ++ V++ S +G++ DE TGRI +F+EKPK +I+
Sbjct: 119 ELLDFHKKHGAEGTILVTKVEDP--SKYGVVVHDENTGRIERFVEKPK--VFVGNKINA- 173
Query: 290 ALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSEVIPMATKDFNVQAYL 349
GIY+ VL ++ E+ P + + AY
Sbjct: 174 ------------------GIYILNPSVLDRI----PLRPTSIEKEIFPKMASEGQLYAYE 211
Query: 350 FNDYWEDIGTIKSF 363
+W DIG K F
Sbjct: 212 LPGFWMDIGQPKDF 225
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 8e-05
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 97 ILGGGAGTRLFPLTGRRAKPAVPIGGCYR-LIDVPMSNCINSGIKKIYI 144
IL G GTR+ PLT R KP VP+ G + LID + +GI++I +
Sbjct: 4 ILAAGLGTRMRPLTDTRPKPLVPVAG--KPLIDHALDRLAAAGIRRIVV 50
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221 |
| >gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 8e-05
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
IIL G G+RL PLT R K + I G L++ + +GI I I+T + + +
Sbjct: 2 IILAAGRGSRLRPLTEDRPKCLLEING-KPLLERQIETLKEAGIDDIVIVTGYKKEQIEE 60
Query: 156 HISRTYNL 163
+ + N+
Sbjct: 61 LLKKYPNI 68
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229 |
| >gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 5e-04
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 19/76 (25%)
Query: 417 CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCI 476
+++S++G R+ GV + ++++M V IG ++ I + I
Sbjct: 12 AIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSI 52
Query: 477 IDKNAKIGKNVIIANK 492
I NA IG+NV + N
Sbjct: 53 IGDNAVIGENVRVVNL 68
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79 |
| >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.001
Identities = 60/280 (21%), Positives = 104/280 (37%), Gaps = 76/280 (27%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAV--PIGGCYRLIDVPM-----SNCINSGIKKIYILTQF 148
+IL G GTR+ + P V P+ G PM G +I ++
Sbjct: 2 VILAAGKGTRM-----KSDLPKVLHPLAG------KPMLEHVLDAARALGPDRIVVVVGH 50
Query: 149 NSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDA 208
++ + + + F VL Q GT AV+Q + A
Sbjct: 51 GAEQV-----KKALANPNVEF------VLQEEQL----------GTGHAVKQAL----PA 85
Query: 209 KHRNIENILILSGDH-LYRMDYM-DFVQHHINSGGDISVCCLPVDESRASDFGLMKIDET 266
++L+L GD L + + ++ H +G D++V L + + +G + D
Sbjct: 86 LKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTV--LTAELEDPTGYGRIIRDGN 143
Query: 267 GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP 326
G++ + +E + D T + +E + GIY F E L + L P
Sbjct: 144 GKVLRIVE----------EKDATEEEKAIREV-------NAGIYAFDAEFLFEAL----P 182
Query: 327 E---ANDFG----SEVIPMATKD-FNVQAYLFNDYWEDIG 358
+ N G +++I +A D V A L +D E +G
Sbjct: 183 KLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLG 222
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 |
| >gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNS 150
K IIL GG+GTRL+P+T +K +PI +I P+S + +GI+ I I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYD-KPMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 151 QSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKH 210
+ + LGDG +G + Q + D + Q + E+
Sbjct: 61 TPRFQQL-----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIG 101
Query: 211 RNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIR 270
+ + L+L + Y D ++ +N +V V++ +G+++ D+ G
Sbjct: 102 GD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQNGTAI 158
Query: 271 QFLEKP 276
EKP
Sbjct: 159 SLEEKP 164
|
Length = 292 |
| >gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 66/311 (21%), Positives = 110/311 (35%), Gaps = 83/311 (26%)
Query: 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVP-----MSNCINSGIKKIYIL 145
KAV I G GTR P T K +PI +D P + + +GI+ I I+
Sbjct: 2 KAV---IPAAGLGTRFLPATKAIPKEMLPI------VDKPVIQYIVEEAVAAGIEDIIIV 52
Query: 146 TQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQ-----------RQGESGKKWFQGT 194
T +++ H R+Y L + G ++L + RQ E G
Sbjct: 53 TGRGKRAIEDHFDRSYEL-EETLEKKGKTDLLEEVRIISDLANIHYVRQKEP-----LGL 106
Query: 195 ADAV---RQFIWMFEDAKHRNIENILILSGDHLY-----RMDYMDFVQHHINSGGDISVC 246
AV + FI E +L GD L + + ++ + +G + +
Sbjct: 107 GHAVLCAKPFI---------GDEPFAVLLGDDLIDSKEPCLKQL--IEAYEKTGASV-IA 154
Query: 247 CLPVDESRASDFGLMKI----DETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFP 302
V S +G++K + +++ +EKPK E S N
Sbjct: 155 VEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPS----------------NL- 197
Query: 303 YIASMGIYLFKTEVLLKVLRWHYPEANDFGSEV-----IPMATKDFNVQAYLFNDYWEDI 357
A +G Y+ ++ +L P G E+ I ++ V AY+F D
Sbjct: 198 --AIVGRYVLTPDI-FDILENTKP---GKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDC 251
Query: 358 GTIKSFFDANL 368
G + A +
Sbjct: 252 GNKLGYLKATV 262
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 526 | |||
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 100.0 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 100.0 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 100.0 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 100.0 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 100.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 100.0 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 100.0 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 100.0 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 100.0 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 100.0 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 100.0 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 100.0 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 100.0 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 100.0 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 100.0 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 100.0 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 100.0 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 100.0 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 100.0 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 100.0 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 100.0 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 100.0 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 100.0 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 100.0 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 100.0 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 100.0 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 100.0 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 99.98 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 99.97 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 99.96 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.96 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.96 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.96 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.94 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.94 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 99.93 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.92 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.91 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.91 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 99.9 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.9 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.88 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 99.86 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 99.85 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 99.82 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.78 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.66 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 99.65 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.65 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 99.62 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 99.6 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 99.59 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 99.58 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.57 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.56 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 99.55 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 99.54 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 99.5 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 99.48 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.48 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 99.48 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 99.46 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.45 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 99.45 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.44 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.44 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 99.44 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.43 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.42 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.41 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 99.41 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 99.4 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.4 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 99.4 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.4 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.4 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.4 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.37 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.37 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 99.33 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.3 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 99.3 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 99.27 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 99.26 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.23 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 99.22 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 99.2 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 99.19 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.19 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.18 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.15 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 99.14 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.13 | |
| PLN02296 | 269 | carbonate dehydratase | 99.13 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.13 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.12 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.11 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.1 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.1 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.1 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 99.09 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 99.07 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.06 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.06 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.06 | |
| PLN02472 | 246 | uncharacterized protein | 99.06 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.05 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 99.04 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.04 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 99.04 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.04 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.02 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 99.02 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 99.0 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 98.99 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.98 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 98.98 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.98 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.97 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 98.96 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.96 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 98.96 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 98.96 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 98.95 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.94 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 98.93 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.92 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 98.92 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 98.9 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 98.9 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.9 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.9 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 98.9 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.89 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.88 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.88 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 98.88 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.88 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 98.87 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.87 | |
| PLN02472 | 246 | uncharacterized protein | 98.87 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.85 | |
| PLN02296 | 269 | carbonate dehydratase | 98.85 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 98.84 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 98.84 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 98.84 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 98.84 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.83 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.83 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 98.81 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 98.81 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 98.79 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 98.78 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 98.78 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 98.78 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 98.77 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.76 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.76 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.76 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 98.75 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.75 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.72 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.7 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.62 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.62 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.6 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.58 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.55 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.53 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.52 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.51 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.46 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.46 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.45 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.41 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.41 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.41 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.4 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.39 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.37 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 98.37 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.36 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.36 | |
| PLN02357 | 360 | serine acetyltransferase | 98.36 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.35 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 98.35 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 98.34 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.34 | |
| PLN02739 | 355 | serine acetyltransferase | 98.33 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.33 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.32 | |
| PLN02357 | 360 | serine acetyltransferase | 98.32 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.3 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.29 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.29 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.28 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 98.27 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.27 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 98.26 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.26 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.24 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.23 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.22 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 98.21 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.2 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 98.2 | |
| PLN02739 | 355 | serine acetyltransferase | 98.2 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.2 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.17 | |
| PRK00576 | 178 | molybdopterin-guanine dinucleotide biosynthesis pr | 98.17 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 98.16 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 98.15 | |
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 98.15 | |
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 98.15 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.15 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 98.14 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 98.13 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.12 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.12 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.05 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.04 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.03 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.01 | |
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 97.98 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 97.97 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 97.97 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 97.8 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 97.8 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 97.72 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 97.68 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 97.61 | |
| KOG2638 | 498 | consensus UDP-glucose pyrophosphorylase [Carbohydr | 97.58 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.54 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.47 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 97.31 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 97.25 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 97.22 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 97.04 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 96.99 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 96.85 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 96.82 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 96.74 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 96.71 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 95.79 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 95.16 | |
| TIGR03552 | 195 | F420_cofC 2-phospho-L-lactate guanylyltransferase | 94.6 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 94.22 | |
| KOG2388 | 477 | consensus UDP-N-acetylglucosamine pyrophosphorylas | 93.48 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 93.37 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 88.94 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 88.54 | |
| cd06423 | 180 | CESA_like CESA_like is the cellulose synthase supe | 85.26 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 84.31 | |
| cd06434 | 235 | GT2_HAS Hyaluronan synthases catalyze polymerizati | 83.87 | |
| cd04188 | 211 | DPG_synthase DPG_synthase is involved in protein N | 82.17 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 81.85 | |
| cd06439 | 251 | CESA_like_1 CESA_like_1 is a member of the cellulo | 80.98 |
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-71 Score=542.57 Aligned_cols=361 Identities=43% Similarity=0.721 Sum_probs=329.9
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
+.|+||||.||+||||+|||..+||||+|++++ |||+++|++|.++||++|++.++|+++++++|+.+.|.. +|+
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~----~lg 82 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGK----ELG 82 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhh----ccc
Confidence 789999999999999999999999999999977 999999999999999999999999999999999999833 344
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
|+++...|++ +.|++|++++.|+.+|..++ .+|+||+||++|+++|++|+++|+++++++|+++.++
T Consensus 83 ---Vei~~s~ete----plgtaGpl~laR~~L~~~~~------~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~v 149 (371)
T KOG1322|consen 83 ---VEILASTETE----PLGTAGPLALARDFLWVFED------APFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKV 149 (371)
T ss_pred ---eEEEEEeccC----CCcccchHHHHHHHhhhcCC------CcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEec
Confidence 8999988875 78999999999999998874 4899999999999999999999999999999999999
Q ss_pred cCCcCCCceEEEEcC-CCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCC
Q 043870 251 DESRASDFGLMKIDE-TGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAN 329 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~-~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~ 329 (526)
++ +++||++++|+ +|+|.+|.|||+.. .++..++|+|+|++++|++++ .+|.
T Consensus 150 de--pSkyGvv~~d~~~grV~~F~EKPkd~---------------------vsnkinaGiYi~~~~vL~ri~--~~pt-- 202 (371)
T KOG1322|consen 150 DE--PSKYGVVVIDEDTGRVIRFVEKPKDL---------------------VSNKINAGIYILNPEVLDRIL--LRPT-- 202 (371)
T ss_pred cC--ccccceEEEecCCCceeEehhCchhh---------------------hhccccceEEEECHHHHhHhh--hccc--
Confidence 87 88999999998 89999999999943 345567999999999998876 3454
Q ss_pred ChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCCCeeecCeeEeeeE--
Q 043870 330 DFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSI-- 407 (526)
Q Consensus 330 d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~-- 407 (526)
+|++|++|.+++++++++|.++|||+|||+|+||+.+ +.||+.+.+.++++++.||+++.++++.|++
T Consensus 203 SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g----------~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~ 272 (371)
T KOG1322|consen 203 SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTG----------FSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIAS 272 (371)
T ss_pred chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHH----------HHHHHhhCcccCCccccCCccccccEeeccccc
Confidence 4899999999999999999999999999999999999 5678888999999999999999999999955
Q ss_pred ECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCc
Q 043870 408 ISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNV 487 (526)
Q Consensus 408 Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~ 487 (526)
+|++|.|++ +|+||++|+|++|++|.+|++|++++|+++++++++++++++|+++|. +|+++|+||++|
T Consensus 273 iG~~C~Ig~----~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~-------~id~~a~lG~nV 341 (371)
T KOG1322|consen 273 IGENCSIGP----NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWA-------RIDKNAVLGKNV 341 (371)
T ss_pred cCCccEECC----CceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCce-------EEecccEeccce
Confidence 456666665 799999999999999999999999999999999999999998877775 899999999999
Q ss_pred EEccCCCcCCccccCCCeEEccCcEEECCCCEEC
Q 043870 488 IIANKDGVEEAERPSDGFYIRSGITVVLKNTTIK 521 (526)
Q Consensus 488 ~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~ 521 (526)
+|.|.+.+.+. ++.++++++++|.++++|.
T Consensus 342 ~V~d~~~vn~g----~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 342 IVADEDYVNEG----SGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred EEecccccccc----eeEEeccceeecccccccC
Confidence 99999888876 7899999999999999873
|
|
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-71 Score=559.63 Aligned_cols=386 Identities=42% Similarity=0.732 Sum_probs=353.0
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
.+.+-|+|||||.|+||.|||..++||.+|++|+|+|||++|++|.++||++|.|+++|...+|.+||.+.|+|+.+.
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~-- 80 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDR-- 80 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCcccccc--
Confidence 456899999999999999999999999999999999999999999999999999999999999999999998886543
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
..+++.++.+.+. +.++.|++||++|+++.++.+++ ...+.++|++||++|++||.++++.|.+++|++|++|.+
T Consensus 81 ~~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~ 155 (393)
T COG0448 81 KNGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKE 155 (393)
T ss_pred ccCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEE
Confidence 2456899988776 35678999999999999999986 577999999999999999999999999999999999999
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC---
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP--- 326 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~--- 326 (526)
++..+++.||++.+|++++|++|.|||..... ...+++||+|+|++++|.++|++...
T Consensus 156 Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~ 216 (393)
T COG0448 156 VPREEASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDPN 216 (393)
T ss_pred CChHhhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999997210 22389999999999999999987643
Q ss_pred CCCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCCCeee-cCeeEee
Q 043870 327 EANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKI-EKCRVQD 405 (526)
Q Consensus 327 ~~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~ 405 (526)
...||+.++||.+++.+++++|+|+|||.||||+++|++||++|++..+.+.+|++++||++.....||+++ ++..+.+
T Consensus 217 ~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~n 296 (393)
T COG0448 217 SSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSN 296 (393)
T ss_pred ccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEee
Confidence 357999999999999999999999999999999999999999999977778899999999999999999999 6777899
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGK 485 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~ 485 (526)
|.|+.||+|.. +|+||+|+.+++|+++|.|++|++|++ +.||+||.|++|||++||+|++
T Consensus 297 SLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~~ 356 (393)
T COG0448 297 SLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIGE 356 (393)
T ss_pred eeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeCC
Confidence 99999999976 999999999999999999999999999 8999999999999999999999
Q ss_pred CcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 486 NVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 486 ~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
|++|++.. ++.++.. +.+. ++++||++++.++.+..
T Consensus 357 g~~i~~~~--~~~d~~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 357 GVVIGGDK--PEEDRKR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred CcEEcCCc--chhcccc-cccc-CCcEEEecccEeccccc
Confidence 99999875 5666666 6666 99999999999988764
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=548.22 Aligned_cols=435 Identities=76% Similarity=1.289 Sum_probs=384.1
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
|++|+|||||||+|+||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.|.++.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 45799999999999999999999999999999988999999999999999999999999999999999877755544444
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
...++.++...|.. ..+.|+.||+++++++++++++...+..++|++++||++++.|+.++++.|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 44446666655542 2345789999999999988764211125899999999999999999999999999999999988
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCC
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAN 329 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~ 329 (526)
++.+++.+||++.+|++++|.+|.|||..+....+++++++|++++.+.+..++++++|+|+|++++|..++++..+...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 87666789999999999999999999987666778999999998886655567899999999999999878777655555
Q ss_pred ChhhchHhhhhcC-CcEEEEEecceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCCCeeecCeeEeeeEE
Q 043870 330 DFGSEVIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSII 408 (526)
Q Consensus 330 d~~~dil~~li~~-~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~I 408 (526)
+|..++++.++.+ .++++|.+++||.|||++++|++||+.++...+...++++..++++.....||+.+.++++.+|.|
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 7888999999876 789999999999999999999999999998776666778888899988888999999999999999
Q ss_pred CCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcE
Q 043870 409 SHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVI 488 (526)
Q Consensus 409 g~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~ 488 (526)
+++|.|+.+.|++|+||++|+|++||+|.++++||.++|+++........+|.+++.||++|+|++++|++++.||++++
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 99999997788999999999999999999999999888888776766666777778999999999999999999999999
Q ss_pred EccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 489 IANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 489 i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
|.+++++.+..++|++++|++|+++||++|.|.+||+|
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 399 IINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred EecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 99999999999999999999998899999999999986
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-62 Score=520.41 Aligned_cols=427 Identities=60% Similarity=1.061 Sum_probs=371.5
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
.++.|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.|.+. .+.
T Consensus 2 ~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~---~~~ 78 (429)
T PRK02862 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD---GFS 78 (429)
T ss_pred CcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc---ccC
Confidence 36899999999999999999999999999999989999999999999999999999999999999998655321 111
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
.+.+.++...|.. ....|+.||++|++++++++++ ...++|+|++||++++.|+.++++.|.+.++++|+++.+.
T Consensus 79 ~g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~---~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~ 153 (429)
T PRK02862 79 GGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQE---WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPV 153 (429)
T ss_pred CCEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEec
Confidence 2334454443321 2234568999999999998863 2247899999999999999999999999999999999877
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCC
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAND 330 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d 330 (526)
+..++..||++.+|++++|..|.|||.....+.+.++.++|..++.+.....+++++|+|+|++++|..+++.. +...+
T Consensus 154 ~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~~ 232 (429)
T PRK02862 154 DEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYTD 232 (429)
T ss_pred ChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChhh
Confidence 65557789999999899999999999866566778888888877766666678999999999999998777653 23456
Q ss_pred hhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhc-CCCCCcccCCCCCcccCCCCCCCCeeecCeeEeeeEEC
Q 043870 331 FGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT-DKPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIIS 409 (526)
Q Consensus 331 ~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll-~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig 409 (526)
+..++++.++++.++++|.+++||.|+||+++|++||+.++ ...+....+.+..++++.+.+.||+.+.++++.++.||
T Consensus 233 ~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig 312 (429)
T PRK02862 233 FGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIA 312 (429)
T ss_pred hHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEEC
Confidence 77899999999999999999999999999999999999998 55555567778889999999999999988999999999
Q ss_pred CCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEE
Q 043870 410 HGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVII 489 (526)
Q Consensus 410 ~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i 489 (526)
++|.|..+.|.+|+||++|+|+++|+|.+|+++|.++|..+..-..++..|..++.||+||.|++|+|+++|+||++|++
T Consensus 313 ~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 313 EGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRI 392 (429)
T ss_pred CCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEE
Confidence 99999778899999999999999999999999999888877766677778888899999999999999999999999999
Q ss_pred ccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 490 ANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 490 ~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
.|++.+.+.++..+|++|+.|+++|++++++++||+|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 393 VNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred ecCCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 9999999999999999999999999999999999976
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-55 Score=457.85 Aligned_cols=374 Identities=39% Similarity=0.621 Sum_probs=313.8
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+...|+.....
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 80 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRIN 80 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCCC
Confidence 45799999999999999999999999999999998899999999999999999999999999999999643323211111
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
..+.++..++. +..++|+.||++||+++++++.+ ...++|+|++||++++.++.++++.|.+.++++|+++..
T Consensus 81 --~~~~i~~~~~~--~~~~~~~~Gta~al~~a~~~l~~---~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~ 153 (380)
T PRK05293 81 --GGVTILPPYSE--SEGGKWYKGTAHAIYQNIDYIDQ---YDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIE 153 (380)
T ss_pred --CCEEEeCCccc--CCCCcccCCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEE
Confidence 12445422222 12346789999999999999863 223789999999999999999999999988998988877
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC---
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP--- 326 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~--- 326 (526)
.+..++..||++..|++++|.+|.|||..+ .++++++|+|+|++++|..+++....
T Consensus 154 ~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~---------------------~~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 212 (380)
T PRK05293 154 VPWEEASRFGIMNTDENMRIVEFEEKPKNP---------------------KSNLASMGIYIFNWKRLKEYLIEDEKNPN 212 (380)
T ss_pred cchhhccccCEEEECCCCcEEEEEeCCCCC---------------------CcceeeeEEEEEcHHHHHHHHHHHhhcCC
Confidence 655557789999999889999999998643 35689999999999999777765322
Q ss_pred CCCChhhchHhhhhcC-CcEEEEEecceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCCCeee-cCeeEe
Q 043870 327 EANDFGSEVIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKI-EKCRVQ 404 (526)
Q Consensus 327 ~~~d~~~dil~~li~~-~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~ 404 (526)
...+|..++++.++++ .++++|.++++|.|+||+++|.+||+.++...+...++++...+++...+.+|++| .++.|.
T Consensus 213 ~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 292 (380)
T PRK05293 213 SSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK 292 (380)
T ss_pred chhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEe
Confidence 2345667999998874 68999999999999999999999999998877767778888888888889999999 688898
Q ss_pred eeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEEC
Q 043870 405 DSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIG 484 (526)
Q Consensus 405 ~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig 484 (526)
++.||++|.|+ +.+.+|+||++|+|+++|+|.+++++.+ +.||++|.|.+|+|+++|+||
T Consensus 293 ~~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~i~ 352 (380)
T PRK05293 293 NSLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAVIG 352 (380)
T ss_pred cCEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCEEC
Confidence 99999999996 4688999999999999999999999888 899999999999999999999
Q ss_pred CCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 485 KNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 485 ~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
+++++.+... +..+||++++|+++++|
T Consensus 353 ~~~~i~~~~~---------------~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 353 DGVIIGGGKE---------------VITVIGENEVIGVGTVI 379 (380)
T ss_pred CCCEEcCCCc---------------eeEEEeCCCCCCCCcEe
Confidence 9999987631 13567888888888875
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=460.13 Aligned_cols=384 Identities=38% Similarity=0.694 Sum_probs=313.8
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+.+|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.|++. +.
T Consensus 3 ~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~-~~-- 79 (407)
T PRK00844 3 MPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLS-GL-- 79 (407)
T ss_pred CCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCcc-cc--
Confidence 567999999999999999999999999999999989999999999999999999999999999999997554321 11
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
...++.... .+.. .++.|+.||++|++++++++.+ ...++|+|++||++++.++.++++.|.++++++|+++..
T Consensus 80 ~~~~~~~~~-~~~~--~~~~~~lGta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~ 153 (407)
T PRK00844 80 LGNYITPVP-AQQR--LGKRWYLGSADAIYQSLNLIED---EDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIR 153 (407)
T ss_pred CCCeEEECC-cccC--CCCCcccCCHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEe
Confidence 111121111 1111 2346779999999999999964 223569999999999999999999999999999998877
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC---
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP--- 326 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~--- 326 (526)
++.+.+..||++.+|++|+|..|.|||..+.... ....++++++|+|+|++++|.++++....
T Consensus 154 ~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~~--------------~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 219 (407)
T PRK00844 154 VPREEASAFGVIEVDPDGRIRGFLEKPADPPGLP--------------DDPDEALASMGNYVFTTDALVDALRRDAADED 219 (407)
T ss_pred cchHHcccCCEEEECCCCCEEEEEECCCCccccc--------------CCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCc
Confidence 6545577899999998999999999987532000 00135789999999999998777765221
Q ss_pred CCCChhhchHhhhhcCCcEEEEEe------------cceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCC
Q 043870 327 EANDFGSEVIPMATKDFNVQAYLF------------NDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLP 394 (526)
Q Consensus 327 ~~~d~~~dil~~li~~~~V~~~~~------------~~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~ 394 (526)
...++..++++.++++.++++|.+ ++||.||||+++|++||+.+++..+...++++..++++..+..|
T Consensus 220 ~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~ 299 (407)
T PRK00844 220 SSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLP 299 (407)
T ss_pred ccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCC
Confidence 234566799999999889999976 59999999999999999999987766667777788888877778
Q ss_pred Ceee-cCe----eEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCC
Q 043870 395 PSKI-EKC----RVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRD 469 (526)
Q Consensus 395 ~~~i-~~~----~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 469 (526)
|+.+ ... .+.++.||++|.|+.+.|++|+||++|+|+++|+|++++++.+ +.||++
T Consensus 300 ~~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~ 360 (407)
T PRK00844 300 PAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRG 360 (407)
T ss_pred CceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCC
Confidence 8876 332 5678999999999878899999999999999999999998887 899999
Q ss_pred CEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEc-cCcEEECCCCEE
Q 043870 470 TKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIR-SGITVVLKNTTI 520 (526)
Q Consensus 470 ~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~-~g~~~i~~~~~i 520 (526)
|.|.+|+|+++|+||+++++++.. +.+ +++++|. +|.++|++|++|
T Consensus 361 ~~i~~~ii~~~~~i~~~~~i~~~~---~~~--~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 361 AVVRRAILDKNVVVPPGATIGVDL---EED--RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred CEEEeeEECCCCEECCCCEECCCc---ccc--ccceEeccceEEEeCCCCCC
Confidence 999999999999999999998741 222 4577887 888898888764
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-53 Score=449.83 Aligned_cols=387 Identities=36% Similarity=0.668 Sum_probs=315.7
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+.+++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.|++.. .+
T Consensus 13 ~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~-~~- 90 (425)
T PRK00725 13 TRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFR-EE- 90 (425)
T ss_pred hcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccc-cC-
Confidence 4568999999999999999999999999999999459999999999999999999999999999999986553211 01
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
...++.++...+.. ..+.|+.||++++++++++++. ...++|+|++||++++.++.++++.|.++++++|+++.+
T Consensus 91 ~~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~---~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~ 165 (425)
T PRK00725 91 LGEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRR---YDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLE 165 (425)
T ss_pred CCCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEe
Confidence 11235555443331 2346779999999999999963 224789999999999999999999999999999999887
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC---
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP--- 326 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~--- 326 (526)
++.+++..||++.+|++++|..|.|||..+.. +. ....++++++|+|+|++++|.++|++...
T Consensus 166 ~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~------------~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~ 231 (425)
T PRK00725 166 VPREEASAFGVMAVDENDRITAFVEKPANPPA--MP------------GDPDKSLASMGIYVFNADYLYELLEEDAEDPN 231 (425)
T ss_pred cchhhcccceEEEECCCCCEEEEEECCCCccc--cc------------cCccceEEEeeEEEEeHHHHHHHHHHhhcCCC
Confidence 75556778999999988999999999864310 00 00135789999999999998777765321
Q ss_pred CCCChhhchHhhhhcCCcEEEEEec-----------ceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCCC
Q 043870 327 EANDFGSEVIPMATKDFNVQAYLFN-----------DYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPP 395 (526)
Q Consensus 327 ~~~d~~~dil~~li~~~~V~~~~~~-----------~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~~ 395 (526)
...+|..++++.++++.++++|.++ +||.||||+++|++||+.++...+...+++...++++.....||
T Consensus 232 ~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~ 311 (425)
T PRK00725 232 SSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPP 311 (425)
T ss_pred ccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCC
Confidence 2346778999999999999999886 59999999999999999998876666677777788887778888
Q ss_pred eeec------CeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCC
Q 043870 396 SKIE------KCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRD 469 (526)
Q Consensus 396 ~~i~------~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 469 (526)
+.+- .+.+.+|+||+||+|.++.|.+|+||++|+|+++|+|++|+++++ +.||++
T Consensus 312 ~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~~ 372 (425)
T PRK00725 312 AKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGRS 372 (425)
T ss_pred CeEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECCC
Confidence 8661 245778999999999778899999999999999999999999988 899999
Q ss_pred CEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEE-ccCcEEECCCCEEC
Q 043870 470 TKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYI-RSGITVVLKNTTIK 521 (526)
Q Consensus 470 ~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I-~~g~~~i~~~~~i~ 521 (526)
|.|.+|+|+++|+|+++++|+... . ..+++.+| ..|+++|++++.+.
T Consensus 373 ~~i~~~ii~~~~~i~~~~~i~~~~-~----~~~~~~~~~~~~~~~i~~~~~~~ 420 (425)
T PRK00725 373 CRLRRCVIDRGCVIPEGMVIGEDP-E----EDAKRFRRSEEGIVLVTREMLDK 420 (425)
T ss_pred CEEeeEEECCCCEECCCCEECCCC-C----CCCceeEecCccEEEECCCcccc
Confidence 999999999999999999997542 1 12334555 47888999987654
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-50 Score=414.63 Aligned_cols=352 Identities=28% Similarity=0.478 Sum_probs=281.8
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
.|+|||||||+||||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++|..+.+.+|+.+.+.++.
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~------ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGV------ 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccCC------
Confidence 48999999999999999999999999999999 99999999999999999999999999999999986532221
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEcc
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVD 251 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~ 251 (526)
.+.+..... +.||+++|+++.+++.. ++|++++||.+++.|+.+++++|+.+.+..++....+.
T Consensus 74 -~I~y~~e~~---------~lGTag~l~~a~~~l~~------~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~ 137 (358)
T COG1208 74 -RITYVVEKE---------PLGTAGALKNALDLLGG------DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL 137 (358)
T ss_pred -ceEEEecCC---------cCccHHHHHHHHHhcCC------CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC
Confidence 144444332 37999999999999863 78999999999999999999999999888888887776
Q ss_pred CCcCCCceEEEEcCC-CCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCC
Q 043870 252 ESRASDFGLMKIDET-GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAND 330 (526)
Q Consensus 252 ~~~~~~~g~v~~d~~-g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d 330 (526)
+. ..||++..+++ ++|.+|.|||..... .++++++|+|+|++++|. +++. ....+
T Consensus 138 ~~--~~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~-~i~~--~~~~~ 193 (358)
T COG1208 138 DP--SEFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFD-YIEK--GERFD 193 (358)
T ss_pred CC--CcCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhh-hccc--CCccc
Confidence 64 78999998844 699999999953110 468999999999999997 4432 33567
Q ss_pred hhhchHhhhhcCCc-EEEEEecceeeecCChhhHHHhchhhcCCCCCcccCCCCCc---ccCCCCCCCCeeecCeeEeee
Q 043870 331 FGSEVIPMATKDFN-VQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKP---IFTSPRFLPPSKIEKCRVQDS 406 (526)
Q Consensus 331 ~~~dil~~li~~~~-V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~---i~~~~~~~~~~~i~~~~i~~s 406 (526)
|..+++|.+++... +++|.++++|.|||||+||.+|+..++.............. +.. ..+.+|++|.. ++
T Consensus 194 ~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~----~~ 268 (358)
T COG1208 194 FEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGP----GA 268 (358)
T ss_pred chhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECC----CC
Confidence 77789999999887 99999999999999999999999999864432211000000 111 33444444432 35
Q ss_pred EECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCC
Q 043870 407 IISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKN 486 (526)
Q Consensus 407 ~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 486 (526)
.|+.++.|+. +++||++|+|+++++|+++++|.+ +.||+++.|.+|+|+.||+||++
T Consensus 269 ~i~~~~~i~~----~~~ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~~ 325 (358)
T COG1208 269 KIGPGALIGP----YTVIGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGAS 325 (358)
T ss_pred EECCCCEECC----CcEECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECCc
Confidence 5555555555 899999999999999999999998 89999999999999999999992
Q ss_pred cEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 487 VIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 487 ~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
. . +.+ ..++.++.|..|+ +++.++.+..++++
T Consensus 326 ~-~-----i~d-~~~g~~~~i~~g~-~~~~~~~~~~~~~~ 357 (358)
T COG1208 326 L-I-----IGD-VVIGINSEILPGV-VVGPGSVVESGEIE 357 (358)
T ss_pred e-e-----ecc-eEecCceEEcCce-EeCCCccccCcccc
Confidence 2 2 556 7777777777774 44888888777653
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=414.10 Aligned_cols=356 Identities=49% Similarity=0.885 Sum_probs=289.4
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
|||||||.||||+|||.++||||+||+|+||||+|++++|.++|+++|+|++++..+++.+|+.+.|++..-. ...+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~---~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFI---DGFV 77 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccCcc---CCCE
Confidence 6999999999999999999999999999967999999999999999999999999999999998655321100 1125
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccCCc
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESR 254 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~ 254 (526)
+++...+. ...+.|+.||+++++.+.+++++ ...++|++++||++++.++.++++.|...++++++++.+.+...
T Consensus 78 ~~~~~~~~--~~~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~ 152 (361)
T TIGR02091 78 TLLPAQQR--ESGTDWYQGTADAVYQNLDLIED---YDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKE 152 (361)
T ss_pred EEeCCccc--CCCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHh
Confidence 55443332 13456778999999999998863 22378999999999999999999999888888888888776556
Q ss_pred CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC---CCCCh
Q 043870 255 ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP---EANDF 331 (526)
Q Consensus 255 ~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~---~~~d~ 331 (526)
+..||++.+|++++|..|.|||..+.... . ....+++++|+|+|++++|..+++.... ...++
T Consensus 153 ~~~~g~v~~d~~~~v~~~~ekp~~~~~~~--------~------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 218 (361)
T TIGR02091 153 ASRFGVMQVDEDGRIVDFEEKPANPPSIP--------G------MPDFALASMGIYIFDKDVLKELLEEDADDPESSHDF 218 (361)
T ss_pred cccccEEEECCCCCEEEEEECCCCccccc--------c------cccccEEeeeEEEEcHHHHHHHHHHHhhcCCccccc
Confidence 77899999998899999999985432100 0 0012489999999999998767765321 23456
Q ss_pred hhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccC-CCCCCCCeeec-CeeEeeeEEC
Q 043870 332 GSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFT-SPRFLPPSKIE-KCRVQDSIIS 409 (526)
Q Consensus 332 ~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~-~~~~~~~~~i~-~~~i~~s~Ig 409 (526)
..++++.++++.++++|.++++|.||||+++|.+|++.++++.+....+....++.+ ...+.|+++++ .+.+.++.||
T Consensus 219 ~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig 298 (361)
T TIGR02091 219 GKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVS 298 (361)
T ss_pred HHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEEC
Confidence 679999999989999999999999999999999999999987654434444444432 33556777774 5578889999
Q ss_pred CCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEE
Q 043870 410 HGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVII 489 (526)
Q Consensus 410 ~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i 489 (526)
++|.|+.+.|.+|+||++|+|+++|+|.+++++++ +.||+++.|++|+|+++++||.+++|
T Consensus 299 ~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i 359 (361)
T TIGR02091 299 EGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVI 359 (361)
T ss_pred CCCEECCCEEEccEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEe
Confidence 99999988899999999999999999999999887 89999999999999999999999999
Q ss_pred cc
Q 043870 490 AN 491 (526)
Q Consensus 490 ~~ 491 (526)
+|
T Consensus 360 ~~ 361 (361)
T TIGR02091 360 GN 361 (361)
T ss_pred CC
Confidence 76
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=416.86 Aligned_cols=350 Identities=26% Similarity=0.438 Sum_probs=278.9
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChh-HHHHHhhhcccCCCCcccC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQ-SLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~-~l~~~l~~~~~~~~~~~~~ 170 (526)
.|+|||||||+|+||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|..+ ++.+||.+...|+......
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~ 81 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKRD 81 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCcccccC
Confidence 589999999999999999999999999999998899999999999999999999999987 9999997543333221111
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
+...+. .+.. +.+..|++++++.++++++. ...++|+|++||++++.|+.+++++|.++++++|+++.++
T Consensus 82 -~~~~~~--~~e~----~~l~tg~~~a~~~a~~~l~~---~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v 151 (369)
T TIGR02092 82 -GLFVFP--YNDR----DDLSEGGKRYFSQNLEFLKR---STSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKV 151 (369)
T ss_pred -cEEEEe--ccCC----CCcccChHHHHHHHHHHHHh---CCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEec
Confidence 111111 1221 12224777889888888852 1237899999999999999999999999999999999887
Q ss_pred cCCcCCCce-EEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-C
Q 043870 251 DESRASDFG-LMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-A 328 (526)
Q Consensus 251 ~~~~~~~~g-~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-~ 328 (526)
+...+..|| ++..|++|+|..|.+++... ....+++|+|+|++++|..+++...+. .
T Consensus 152 ~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~---------------------~~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 210 (369)
T TIGR02092 152 KPADASEYDTILRFDESGKVKSIGQNLNPE---------------------EEENISLDIYIVSTDLLIELLYECIQRGK 210 (369)
T ss_pred CHHHccccCcEEEEcCCCCEEeccccCCCC---------------------CcceeeeeEEEEEHHHHHHHHHHHhhcCc
Confidence 644456684 56677778888775433221 234678999999999887777654333 2
Q ss_pred CChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCCCCcccC-CCCCcccCCCCCCCCeee-cCeeEeee
Q 043870 329 NDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFY-DPQKPIFTSPRFLPPSKI-EKCRVQDS 406 (526)
Q Consensus 329 ~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~~~~-~~~~~i~~~~~~~~~~~i-~~~~i~~s 406 (526)
.++..++++.++++.++++|.+++||.||||+++|.+||+.+++++.....+ ....++++...+.+|++| ++++|.+|
T Consensus 211 ~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~~ 290 (369)
T TIGR02092 211 LTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVENS 290 (369)
T ss_pred cccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEEe
Confidence 2445688999888889999999999999999999999999998876432222 223345555556789999 78899999
Q ss_pred EECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCC
Q 043870 407 IISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKN 486 (526)
Q Consensus 407 ~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 486 (526)
.||+||.|+ +.|++|+||++|+|+++|.|.+++++.+ +.|++++.|.+|+|+++++||++
T Consensus 291 ~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~~ 350 (369)
T TIGR02092 291 LVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEPN 350 (369)
T ss_pred EEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECCC
Confidence 999999996 6789999999999999999999999988 89999999999999999999999
Q ss_pred cEEccC
Q 043870 487 VIIANK 492 (526)
Q Consensus 487 ~~i~~~ 492 (526)
+.+.+.
T Consensus 351 ~~~~~~ 356 (369)
T TIGR02092 351 VKIAGT 356 (369)
T ss_pred CEeCCC
Confidence 999765
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=381.74 Aligned_cols=326 Identities=21% Similarity=0.364 Sum_probs=235.2
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEecc-ChhHHHHHhhhcccCCCCcccCCC
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQF-NSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~-~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
+|||||||.|+||+|||..+||||+|++|+ |||+|+|++|.++|+++|+|++++ +.+++.+|+.+... |+..
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~~~------~~~~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGER------FGAK 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcccc------cCce
Confidence 589999999999999999999999999999 999999999999999999999999 88899999874222 2211
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccC
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDE 252 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~ 252 (526)
+.++. +. +..|++++++.++.++++ ++|++++||++++.++.++++.|.++++++++++.+.++
T Consensus 74 -~~~~~--~~-------~~~G~~~al~~a~~~l~~------~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~ 137 (353)
T TIGR01208 74 -ITYIV--QG-------EPLGLAHAVYTARDFLGD------DDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD 137 (353)
T ss_pred -EEEEE--CC-------CCCCHHHHHHHHHHhcCC------CCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC
Confidence 22332 21 247999999999988853 679999999999999999999999999999999887654
Q ss_pred CcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC--CCC
Q 043870 253 SRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE--AND 330 (526)
Q Consensus 253 ~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~--~~d 330 (526)
+..||++..+++++|.+|.|||..+ .++++++|+|+|++.++. .+++..+. ...
T Consensus 138 --~~~~g~~~~~~~~~v~~~~ekp~~~---------------------~~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~ 193 (353)
T TIGR01208 138 --PTAFGVAVLEDGKRILKLVEKPKEP---------------------PSNLAVVGLYMFRPLIFE-AIKNIKPSWRGEL 193 (353)
T ss_pred --hhhCeEEEEcCCCcEEEEEECCCCC---------------------CccceEEEEEEECHHHHH-HHHhcCCCCCCcE
Confidence 4579998887678999999998754 346889999999997664 56554332 122
Q ss_pred hhhchHhhhhcC-CcEEEEEecceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCCCeee-cCeeEeeeEE
Q 043870 331 FGSEVIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKI-EKCRVQDSII 408 (526)
Q Consensus 331 ~~~dil~~li~~-~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~s~I 408 (526)
+..++++.++++ .++++|.++++|.|||||+||.+||+.++.+... .+ . .+.+.+.+.+|++| ++++|.++.|
T Consensus 194 ~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~-~~-~---~i~~~~~i~~~~~i~~~~~i~~~~i 268 (353)
T TIGR01208 194 EITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVER-EV-Q---GVDDESKIRGRVVVGEGAKIVNSVI 268 (353)
T ss_pred EHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc-cc-C---CcCCCCEEcCCEEECCCCEEeCCEE
Confidence 346888888865 6899999999999999999999999999875321 11 1 13334444555555 3444444444
Q ss_pred CCCCEEc-ceeeeceEECCCcEECCCCEEe-----ceEEECCcccchhHHHHHHhhCCCcceEECCC-CEEeceEECCCC
Q 043870 409 SHGCFLR-ECSVEHSIVGIRSRLEYGVELK-----DTMMMGADYYQTEAEIAALLAEGKVPVGIGRD-TKIKNCIIDKNA 481 (526)
Q Consensus 409 g~~~~i~-~~~v~~s~ig~~~~I~~~~~i~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~-~~i~~~iI~~~~ 481 (526)
+.+|.|+ +|.|.+++|+++|.|+++|.|+ +++++.+ +.|+.+ +.+.+|+|+++|
T Consensus 269 ~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~-------------------~~i~~~~~~~~~~ii~~~~ 329 (353)
T TIGR01208 269 RGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDE-------------------SVIEGVQARIVDSVIGKKV 329 (353)
T ss_pred ECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCC-------------------CEEcCCcceeecCEEcCCC
Confidence 4444443 2333444555555555555544 3333332 344444 245556666666
Q ss_pred EECCCcEEc
Q 043870 482 KIGKNVIIA 490 (526)
Q Consensus 482 ~Ig~~~~i~ 490 (526)
+|+.++.+.
T Consensus 330 ~i~~~~~~~ 338 (353)
T TIGR01208 330 RIKGNRRRP 338 (353)
T ss_pred EECCCcccc
Confidence 666665554
|
Alternate name: dTDP-D-glucose synthase |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=356.54 Aligned_cols=375 Identities=21% Similarity=0.314 Sum_probs=290.9
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
++.+||||||.||||. +..||-|.|++|+ ||++|+++.+...+.+++.+|+++..+.+.+.+.+.. .
T Consensus 2 ~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~----~----- 68 (460)
T COG1207 2 SLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD----D----- 68 (460)
T ss_pred CceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc----C-----
Confidence 5789999999999999 8899999999999 9999999999999999999999999999888886331 1
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~~~ 249 (526)
+.++. |.. ++||++|+.+++.+|.+ ...+++||++||+ |...+ +.++++.|...++.++++.+.
T Consensus 69 --v~~v~--Q~e-------qlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~ 134 (460)
T COG1207 69 --VEFVL--QEE-------QLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAE 134 (460)
T ss_pred --ceEEE--ecc-------cCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEE
Confidence 22222 221 37999999999999942 2345899999999 76665 788999999999999999988
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCC
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAN 329 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~ 329 (526)
.++ |..||.+..+++|+|.++.|..+..+ .++.-..+|+|+|+|+...|.++|..... .|
T Consensus 135 ~~d--P~GYGRIvr~~~g~V~~IVE~KDA~~-----------------eek~I~eiNtGiy~f~~~~L~~~L~~l~n-nN 194 (460)
T COG1207 135 LDD--PTGYGRIVRDGNGEVTAIVEEKDASE-----------------EEKQIKEINTGIYAFDGAALLRALPKLSN-NN 194 (460)
T ss_pred cCC--CCCcceEEEcCCCcEEEEEEcCCCCH-----------------HHhcCcEEeeeEEEEcHHHHHHHHHHhcc-cc
Confidence 776 77999999999999999999887642 22355689999999999988888877532 33
Q ss_pred ChhhchHhhhhc-----CCcEEEEEecce--eeecCChhhHHHhchhhcCCC-------------CCcccCCCCCcccCC
Q 043870 330 DFGSEVIPMATK-----DFNVQAYLFNDY--WEDIGTIKSFFDANLSLTDKP-------------PKFHFYDPQKPIFTS 389 (526)
Q Consensus 330 d~~~dil~~li~-----~~~V~~~~~~~~--w~dIgt~~d~~~An~~ll~~~-------------~~~~~~~~~~~i~~~ 389 (526)
..++.+|+++++ +.+|.++...++ ...+++-..+-+|+..+.++. |...+++....+...
T Consensus 195 aqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~D 274 (460)
T COG1207 195 AQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRD 274 (460)
T ss_pred ccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCc
Confidence 334444444433 578999988865 567888888888877664321 333344555555555
Q ss_pred CCCCCC------------eee-cCeeEeeeEECCCCEEcc-eeeeceEE------CCCcEECCCCEEeceEEECCcccch
Q 043870 390 PRFLPP------------SKI-EKCRVQDSIISHGCFLRE-CSVEHSIV------GIRSRLEYGVELKDTMMMGADYYQT 449 (526)
Q Consensus 390 ~~~~~~------------~~i-~~~~i~~s~Ig~~~~i~~-~~v~~s~i------g~~~~I~~~~~i~~~v~~~~~~~~~ 449 (526)
+.|.|+ |.| .+|+|+||.|+++|.|.. +.+++|.| |+.+++.+++.|++.+.+|+ |+|+
T Consensus 275 vvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGN-FVEv 353 (460)
T COG1207 275 VVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGN-FVEV 353 (460)
T ss_pred eEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEee-eEEE
Confidence 555553 333 356777888888888876 55555555 45555556666677777875 9999
Q ss_pred hHHHHHHhhCCCcceEECCCCE------EeceEECCCCEECCCcEEccCCCcCCc-cccCCCeEEccCcE-----EECCC
Q 043870 450 EAEIAALLAEGKVPVGIGRDTK------IKNCIIDKNAKIGKNVIIANKDGVEEA-ERPSDGFYIRSGIT-----VVLKN 517 (526)
Q Consensus 450 ~~~~~~~~~~~~~~~~Ig~~~~------i~~~iI~~~~~Ig~~~~i~~~~~v~~~-~~~~~~~~I~~g~~-----~i~~~ 517 (526)
+. ..||++++ |.+|.||.++.||++++..|.++...+ +.+|++++|||++. .||++
T Consensus 354 K~------------a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~ 421 (460)
T COG1207 354 KK------------ATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDG 421 (460)
T ss_pred ec------------ccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCC
Confidence 87 67777776 558999999999999999999998865 45699999999885 78999
Q ss_pred CEECCCccC
Q 043870 518 TTIKDGTII 526 (526)
Q Consensus 518 ~~i~~gt~i 526 (526)
++|++||+|
T Consensus 422 a~iaAGStI 430 (460)
T COG1207 422 ATIAAGSTI 430 (460)
T ss_pred cEEcccceE
Confidence 999999986
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=373.93 Aligned_cols=389 Identities=20% Similarity=0.292 Sum_probs=274.3
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
+++.|||||||.|+||++ .+||+|+|++|+ |||+|+|+++.++|++++++++++..+++.+|+.+..
T Consensus 2 ~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~--------- 68 (459)
T PRK14355 2 NNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDG--------- 68 (459)
T ss_pred CcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCC---------
Confidence 358999999999999984 689999999999 9999999999999999999999999988888886421
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~~~ 248 (526)
.+.++... ++.|++++++.+++.+++ ..++|++++||+ +...++.++++.|.+.+++++++..
T Consensus 69 --~i~~~~~~---------~~~Gt~~al~~a~~~l~~----~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~ 133 (459)
T PRK14355 69 --DVSFALQE---------EQLGTGHAVACAAPALDG----FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTA 133 (459)
T ss_pred --ceEEEecC---------CCCCHHHHHHHHHHHhhc----cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEE
Confidence 13333221 137999999999998863 247899999998 4466799999999888888888877
Q ss_pred EccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-
Q 043870 249 PVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE- 327 (526)
Q Consensus 249 ~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~- 327 (526)
+.++ +..|+.+.+|++++|..|.|||..... . ..++++++|+|+|++++|.++++...+.
T Consensus 134 ~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~---------------~--~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 194 (459)
T PRK14355 134 RLEN--PFGYGRIVRDADGRVLRIVEEKDATPE---------------E--RSIREVNSGIYCVEAAFLFDAIGRLGNDN 194 (459)
T ss_pred EcCC--CCcCCEEEEcCCCCEEEEEEcCCCChh---------------H--hhccEEEEEEEEEeHHHHHHHHHHcCccc
Confidence 6654 457999999988999999998743210 0 0246889999999999876777654332
Q ss_pred --CCChhhchHhhhhcC-CcEEEEEecce--eeecCChhhHHHhchhhcCCC------CCcccCCCCC-cccCCCCCCCC
Q 043870 328 --ANDFGSEVIPMATKD-FNVQAYLFNDY--WEDIGTIKSFFDANLSLTDKP------PKFHFYDPQK-PIFTSPRFLPP 395 (526)
Q Consensus 328 --~~d~~~dil~~li~~-~~V~~~~~~~~--w~dIgt~~d~~~An~~ll~~~------~~~~~~~~~~-~i~~~~~~~~~ 395 (526)
...+..++++.++++ .++.+|.++++ |+|++|+++|++|+..++... ....++++.+ .+...+.++++
T Consensus 195 ~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~ 274 (459)
T PRK14355 195 AQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRD 274 (459)
T ss_pred cCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCC
Confidence 223457899999876 57999999987 999999999999987665321 1122445543 35555555566
Q ss_pred eee-cCeeEe-eeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHH--HHhhCC--------Cc
Q 043870 396 SKI-EKCRVQ-DSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIA--ALLAEG--------KV 462 (526)
Q Consensus 396 ~~i-~~~~i~-~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~--~~~~~~--------~~ 462 (526)
+.| ++|.|. ++.||++|.|+. +.|.+|+||++|.|+.+|.|.++++..+.++...+.+. +.+.++ ..
T Consensus 275 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~ 354 (459)
T PRK14355 275 TTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETK 354 (459)
T ss_pred CEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCcccc
Confidence 555 445444 366777777763 55566777777777776666554443332211110000 000000 01
Q ss_pred ceEECCCCEEe------ceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 463 PVGIGRDTKIK------NCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 463 ~~~Ig~~~~i~------~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
++.||+++++. +++|+++|.||.++++.|.++... ...+|++++|+.+++ .||++++|++||+|
T Consensus 355 ~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v 430 (459)
T PRK14355 355 KIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTV 430 (459)
T ss_pred CCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 14455554443 568888888888888877665544 467899999987764 77888888888865
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=374.74 Aligned_cols=389 Identities=17% Similarity=0.239 Sum_probs=277.9
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+.++.|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+++.+.. .
T Consensus 2 ~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~---~---- 70 (482)
T PRK14352 2 PRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA---P---- 70 (482)
T ss_pred CCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC---C----
Confidence 4457999999999999996 589999999999 9999999999999999999999998888888775321 0
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ec-ccCHHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LY-RMDYMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~-~~dl~~ll~~h~~~~ad~ti~~ 247 (526)
. +.++.. .+..|++++++.++.++.+ ...++|++++||+ ++ ..++.++++.|.+.++++++++
T Consensus 71 --~-~~~~~~---------~~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~ 135 (482)
T PRK14352 71 --E-VDIAVQ---------DEQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLT 135 (482)
T ss_pred --c-cEEEeC---------CCCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEE
Confidence 1 222221 1247999999999988852 2246799999998 44 4569999999988888888777
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
.+.++ +..||.+..|++++|.+|.|||..... +....++++|+|+|++++|..+++...+.
T Consensus 136 ~~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~ 196 (482)
T PRK14352 136 TTLDD--PTGYGRILRDQDGEVTAIVEQKDATPS-----------------QRAIREVNSGVYAFDAAVLRSALARLSSD 196 (482)
T ss_pred eecCC--CCCCCEEEECCCCCEEEEEECCCCCHH-----------------HhhcceEEEEEEEEEHHHHHHHHHhhCcc
Confidence 76654 567999888888999999999885310 01245789999999999997777654332
Q ss_pred ---CCChhhchHhhhhcC-CcEEEEEecceeeecCChhhH------HHhchhhcCCC---------CCcccCCCCCcccC
Q 043870 328 ---ANDFGSEVIPMATKD-FNVQAYLFNDYWEDIGTIKSF------FDANLSLTDKP---------PKFHFYDPQKPIFT 388 (526)
Q Consensus 328 ---~~d~~~dil~~li~~-~~V~~~~~~~~w~dIgt~~d~------~~An~~ll~~~---------~~~~~~~~~~~i~~ 388 (526)
...+..++++.+++. .+|++|.+++||.|+++++.+ ..+|..++... |...++++.+.+.+
T Consensus 197 ~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~ 276 (482)
T PRK14352 197 NAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGR 276 (482)
T ss_pred ccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECC
Confidence 223457899999886 589999999999999999887 44554443321 11223333333333
Q ss_pred C------------CCCCCCeee-cCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCccc-chhHHH-
Q 043870 389 S------------PRFLPPSKI-EKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYY-QTEAEI- 453 (526)
Q Consensus 389 ~------------~~~~~~~~i-~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~-~~~~~~- 453 (526)
. +.++++|.| .+++|.+++||++|.|+++.+.+++||.++.||+++.+..++++|++.. ....++
T Consensus 277 ~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~ 356 (482)
T PRK14352 277 DVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETK 356 (482)
T ss_pred CcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEc
Confidence 3 334444444 3566677888888888777778888999999988888876676665311 100000
Q ss_pred HHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 454 AALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 454 ~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
.+.+..+ +.|+..+.+.+|+||++|.||.++++.|.++... ...+|++++|+.+++ .||++++||+|++|
T Consensus 357 ~~~I~~~---~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v 432 (482)
T PRK14352 357 NATIGRG---TKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVI 432 (482)
T ss_pred ccEECCC---cEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEE
Confidence 0011111 2333344455789999999999999987654433 366788888876665 77999999999865
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=360.31 Aligned_cols=375 Identities=19% Similarity=0.297 Sum_probs=282.0
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
|+++|||||||.||||+| .+||||+|++|+ |||+|+++.|.++ +++|+|++++..+.+.+|+.+.+ .
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~--------~ 67 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF--------P 67 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC--------C
Confidence 357899999999999996 689999999999 9999999999987 79999999999999999886432 0
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
.+.++..... .+.||+++++.+. ...++|++++||..+. ..+.++.+.+.++++++.+.+.
T Consensus 68 --~v~~~~~~~~-------~~~gt~~al~~~~--------~~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~ 128 (430)
T PRK14359 68 --GVIFHTQDLE-------NYPGTGGALMGIE--------PKHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHL 128 (430)
T ss_pred --ceEEEEecCc-------cCCCcHHHHhhcc--------cCCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEc
Confidence 1444432211 2368999997732 1237899999999331 1234455556677888888777
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC---
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE--- 327 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~--- 327 (526)
++ +..||.+..| +|+|..+.|+|..... . ...+..++|+|+|++++|..+++.....
T Consensus 129 ~~--~~~~g~v~~d-~g~v~~i~e~~~~~~~---------------~--~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~ 188 (430)
T PRK14359 129 AD--PKGYGRVVIE-NGQVKKIVEQKDANEE---------------E--LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQ 188 (430)
T ss_pred CC--CccCcEEEEc-CCeEEEEEECCCCCcc---------------c--ccceEEEeEEEEEEHHHHHHHHHhcCccccc
Confidence 65 4568987775 6899999998864210 0 0246789999999999998766543211
Q ss_pred CCChhhchHhhhhcC-CcEEEEEec-ceeeecCChhhHHHhchhhcCCC-------------CCcccCCCCCcccCCCCC
Q 043870 328 ANDFGSEVIPMATKD-FNVQAYLFN-DYWEDIGTIKSFFDANLSLTDKP-------------PKFHFYDPQKPIFTSPRF 392 (526)
Q Consensus 328 ~~d~~~dil~~li~~-~~V~~~~~~-~~w~dIgt~~d~~~An~~ll~~~-------------~~~~~~~~~~~i~~~~~~ 392 (526)
...+..++++.+++. .++.+|..+ ++|.||+|++||.+|+..+..+. +...++++++.+.+.+.+
T Consensus 189 ~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~i 268 (430)
T PRK14359 189 KEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECEL 268 (430)
T ss_pred CceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEE
Confidence 223456888888874 789999887 58999999999999987665321 112245566667777788
Q ss_pred CCCeee-cCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCE
Q 043870 393 LPPSKI-EKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTK 471 (526)
Q Consensus 393 ~~~~~i-~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ 471 (526)
++++.| .++.+.++.|+++|.|+++.+.+|+||++++|++++.|.++ ++|+. ++.+. +++ +| +.||+++.
T Consensus 269 g~~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~-~ig~~-~~i~~---~~~-~~---~~i~~~~~ 339 (430)
T PRK14359 269 EEGVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNT-HIGNF-VETKN---AKL-NG---VKAGHLSY 339 (430)
T ss_pred CCCCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEecc-EEcCc-EEEcc---cEe-cc---cccccccc
Confidence 888888 67888899999999998888999999999999999988654 44432 22221 122 33 68899999
Q ss_pred EeceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 472 IKNCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 472 i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
|.+|+||++|.||.++++.+..+..+ ...+|++++|+++++ .||++++||+|++|
T Consensus 340 i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v 400 (430)
T PRK14359 340 LGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTV 400 (430)
T ss_pred ccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 99999999999999999998766554 357888999987764 77899999998875
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=367.27 Aligned_cols=385 Identities=20% Similarity=0.269 Sum_probs=256.2
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
.++|+|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+.+.+|+.. +
T Consensus 5 ~~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-~-------- 71 (481)
T PRK14358 5 TRPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG-S-------- 71 (481)
T ss_pred cCCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc-C--------
Confidence 4579999999999999996 489999999999 99999999999999999999999998888888742 1
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~~ 247 (526)
.+.++.. .++.|++++++.++.+++. ..++|++++||+ +...++.++++.|.++++++|+++
T Consensus 72 ---~i~~v~~---------~~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~ 135 (481)
T PRK14358 72 ---GVAFARQ---------EQQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILT 135 (481)
T ss_pred ---CcEEecC---------CCcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEE
Confidence 1344332 1247999999999888752 235699999998 445569999999999899999888
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC-
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP- 326 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~- 326 (526)
.++++ +..||++.+|++++|.+|.|||..+.. +.....+++|+|+|+++++ ++++...+
T Consensus 136 ~~~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~-----------------~~~~~~~n~Giyi~~~~~~-~~~~~i~~~ 195 (481)
T PRK14358 136 GELPD--ATGYGRIVRGADGAVERIVEQKDATDA-----------------EKAIGEFNSGVYVFDARAP-ELARRIGND 195 (481)
T ss_pred EEcCC--CCCceEEEECCCCCEEEEEECCCCChh-----------------HhhCCeEEEEEEEEchHHH-HHHHhcCCC
Confidence 87765 456999999989999999999874310 0123568999999997763 34443221
Q ss_pred --CCCChhhchHhhhhcC-CcEEEEEecceeeecCChhhHHHhchh-hcCCC--------------CCcccCCCCCcccC
Q 043870 327 --EANDFGSEVIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDANLS-LTDKP--------------PKFHFYDPQKPIFT 388 (526)
Q Consensus 327 --~~~d~~~dil~~li~~-~~V~~~~~~~~w~dIgt~~d~~~An~~-ll~~~--------------~~~~~~~~~~~i~~ 388 (526)
....+..|+++.++++ .++++|.++++|..++...+|+.+++. +++.. |....+.+...|..
T Consensus 196 ~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~ 275 (481)
T PRK14358 196 NKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGR 275 (481)
T ss_pred ccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECC
Confidence 1223357899998876 579999999999888888777666653 22111 11111122222222
Q ss_pred CCC------------CCCCeee-cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchh-HHH
Q 043870 389 SPR------------FLPPSKI-EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTE-AEI 453 (526)
Q Consensus 389 ~~~------------~~~~~~i-~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~-~~~ 453 (526)
.+. +++++.| .+|.|.+++|+++|.|+. +.+.+++||+++.|++++.|...+++|++..-.. .++
T Consensus 276 ~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i 355 (481)
T PRK14358 276 DVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET 355 (481)
T ss_pred CCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEE
Confidence 222 2333333 234444555555555553 3444555555555555555544333333200000 000
Q ss_pred -HHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCc-cccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 454 -AALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEA-ERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 454 -~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~-~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
.+.+..| +.||..+.+.+|+||+||.||.++++.|..+...+ ..+|++++|+.+++ +||++++|++|+++
T Consensus 356 ~~~~i~~~---~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v 432 (481)
T PRK14358 356 KNARLDAG---VKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAV 432 (481)
T ss_pred CCceecCC---cccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 0000011 22233333456889999999999999887665443 47788888887764 68888999888864
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=364.50 Aligned_cols=378 Identities=19% Similarity=0.268 Sum_probs=269.7
Q ss_pred CCCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcc
Q 043870 89 DPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 89 ~~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
.++.|+|||||||.|+||+ ..+||+|+|++|+ |||+|++++|.++|++++++++++..+.+.+++.+.
T Consensus 2 ~~~~~~aiIlAaG~gtRl~---~~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-------- 69 (456)
T PRK09451 2 LNSAMSVVILAAGKGTRMY---SDLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE-------- 69 (456)
T ss_pred CCCCceEEEEcCCCCCcCC---CCCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC--------
Confidence 4667999999999999998 3689999999999 999999999999999999999999888888777521
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVC 246 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~ 246 (526)
.+.++.... ..|++++++.++.++.+ .++|++++||+ +...++.++++.|.+.+ ++++
T Consensus 70 ----~~~~i~~~~---------~~Gt~~al~~a~~~l~~-----~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~ 129 (456)
T PRK09451 70 ----PLNWVLQAE---------QLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLL 129 (456)
T ss_pred ----CcEEEECCC---------CCCcHHHHHHHHHhhcc-----CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEE
Confidence 133332211 36999999999888742 36899999998 45667999998886544 4556
Q ss_pred EEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC
Q 043870 247 CLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP 326 (526)
Q Consensus 247 ~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~ 326 (526)
+.+.++ +..||++.. ++++|.+|.|||..... +..++++++|+|+|+++.|.++++...+
T Consensus 130 ~~~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~-----------------~~~~~~~~~GiYi~~~~~l~~~l~~~~~ 189 (456)
T PRK09451 130 TVKLDN--PTGYGRITR-ENGKVVGIVEQKDATDE-----------------QRQIQEINTGILVANGADLKRWLAKLTN 189 (456)
T ss_pred EEEcCC--CCCceEEEe-cCCeEEEEEECCCCChH-----------------HhhccEEEEEEEEEEHHHHHHHHHhcCC
Confidence 665554 467999754 57899999999964210 0124579999999999999877776433
Q ss_pred C---CCChhhchHhhhhcC-CcEEEEE------ecce--eeecCChhhHHHhchh--h-cCC----CCC-----------
Q 043870 327 E---ANDFGSEVIPMATKD-FNVQAYL------FNDY--WEDIGTIKSFFDANLS--L-TDK----PPK----------- 376 (526)
Q Consensus 327 ~---~~d~~~dil~~li~~-~~V~~~~------~~~~--w~dIgt~~d~~~An~~--l-l~~----~~~----------- 376 (526)
. ...+..|+++.++++ .++.+|. +.|| |.|++++++|++||.. + ... .|.
T Consensus 190 ~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig 269 (456)
T PRK09451 190 NNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHG 269 (456)
T ss_pred ccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEEC
Confidence 2 234567999999986 6899986 4566 7889999999999842 2 211 121
Q ss_pred -cccCCCCCcccCCCCCCCCeee-cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCccc-chhHH
Q 043870 377 -FHFYDPQKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYY-QTEAE 452 (526)
Q Consensus 377 -~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~-~~~~~ 452 (526)
-..+++.+.+.+.+.+++++.| .++.|.++.|+++|+|+. +.+++|+||+++.|++++.|.....++++.. ....+
T Consensus 270 ~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~ 349 (456)
T PRK09451 270 RDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVE 349 (456)
T ss_pred CCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceecccee
Confidence 1134455555555566666666 467777888888888874 6667777777777777777764444443210 00000
Q ss_pred HHHHhhCCCcceEECCCCE------EeceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEE
Q 043870 453 IAALLAEGKVPVGIGRDTK------IKNCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTI 520 (526)
Q Consensus 453 ~~~~~~~~~~~~~Ig~~~~------i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i 520 (526)
+ ..+.||++++ +.+|+||++|.||+++++.+.++..+ ..++|++++|+.+++ .||.+++|
T Consensus 350 i--------~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i 421 (456)
T PRK09451 350 M--------KKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATI 421 (456)
T ss_pred e--------eceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEE
Confidence 0 0133444444 34678889999999998887655444 477899999987765 67888888
Q ss_pred CCCccC
Q 043870 521 KDGTII 526 (526)
Q Consensus 521 ~~gt~i 526 (526)
++|++|
T Consensus 422 ~~gs~v 427 (456)
T PRK09451 422 GAGTTV 427 (456)
T ss_pred CCCCEE
Confidence 888875
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=361.28 Aligned_cols=375 Identities=20% Similarity=0.283 Sum_probs=265.0
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|+|||||||.|+||+| .+||+|+|++|+ |||+|+++++.++|+++++|++++..+.+.+++.+ ++
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~-~~---------- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN-RD---------- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC-CC----------
Confidence 6899999999999996 689999999999 99999999999999999999999998888888763 21
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ec-ccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LY-RMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~-~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
+.+..... +.|+++++++++.++++ .++|++++||+ ++ ..++.++++.|.+. ..++++.+.
T Consensus 66 -i~~~~~~~---------~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~ 128 (451)
T TIGR01173 66 -VNWVLQAE---------QLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL 128 (451)
T ss_pred -cEEEEcCC---------CCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec
Confidence 33332211 26899999999988852 26799999998 44 45688999888664 356666665
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC---
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE--- 327 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~--- 327 (526)
+ .+..|+.+..|++++|..|.|||..... +...+.+++|+|+|++++|.++++...+.
T Consensus 129 ~--~~~~~g~v~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~ 189 (451)
T TIGR01173 129 P--DPTGYGRIIRENDGKVTAIVEDKDANAE-----------------QKAIKEINTGVYVFDGAALKRWLPKLSNNNAQ 189 (451)
T ss_pred C--CCCCCCEEEEcCCCCEEEEEEcCCCChH-----------------HhcCcEEEEEEEEEeHHHHHHHHHhccccccc
Confidence 4 3556999999888999999998763210 00235789999999999987777654321
Q ss_pred CCChhhchHhhhhcC-CcEEEEEecce--eeecCChhhHHHhchhhcCCC-------------CCc------------cc
Q 043870 328 ANDFGSEVIPMATKD-FNVQAYLFNDY--WEDIGTIKSFFDANLSLTDKP-------------PKF------------HF 379 (526)
Q Consensus 328 ~~d~~~dil~~li~~-~~V~~~~~~~~--w~dIgt~~d~~~An~~ll~~~-------------~~~------------~~ 379 (526)
...+..++++.++++ .++++|.++++ |.+++|++++.+++..+..+. +.. ..
T Consensus 190 ~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~ 269 (451)
T TIGR01173 190 GEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVE 269 (451)
T ss_pred CcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCE
Confidence 123357888888875 57999999987 999999999988866543211 111 12
Q ss_pred CCCCCcccCCCCCCCCeee-cCeeEeeeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEECCcc-cchhHHHHHH
Q 043870 380 YDPQKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMGADY-YQTEAEIAAL 456 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~-~~~~~~~~~~ 456 (526)
+++.+.+.+.+.+++++.| +++.|.++.|+++|.|+ .|.+.+++||.+|.|+++|.|....+++++. +....++
T Consensus 270 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i--- 346 (451)
T TIGR01173 270 IDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVET--- 346 (451)
T ss_pred EcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceee---
Confidence 2333333333344444455 45666777888888887 4667777777777777777776544444321 0000000
Q ss_pred hhCCCcceEECCCCEE------eceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEECCCc
Q 043870 457 LAEGKVPVGIGRDTKI------KNCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIKDGT 524 (526)
Q Consensus 457 ~~~~~~~~~Ig~~~~i------~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~~gt 524 (526)
..+.||++++| .+|+||++|+||.++++.|.++..+ ...++++++|+.+++ .||++++|++|+
T Consensus 347 -----~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~ 421 (451)
T TIGR01173 347 -----KNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGS 421 (451)
T ss_pred -----cCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCC
Confidence 01344444443 3578888888888888887655555 367789999988764 789999999998
Q ss_pred cC
Q 043870 525 II 526 (526)
Q Consensus 525 ~i 526 (526)
+|
T Consensus 422 ~v 423 (451)
T TIGR01173 422 TV 423 (451)
T ss_pred EE
Confidence 75
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=329.06 Aligned_cols=332 Identities=23% Similarity=0.355 Sum_probs=268.6
Q ss_pred ceEEEEEcCC--CCccccCccCCCCccceeeCCcchhHHHHHHHHHh-cCCcEEEEEeccChhHHHHHhhhcccCCCCcc
Q 043870 92 AVASIILGGG--AGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCIN-SGIKKIYILTQFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 92 ~~~aIILAaG--~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
+.+||||.|| +||||+||+.+.||||+||+|+ |||+|.|++|.+ .|..+|+++--|.++.+.+++...-+ .
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~-----e 75 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQ-----E 75 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHh-----h
Confidence 5799999999 6999999999999999999999 999999999998 48999999988887777777764321 1
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~ 248 (526)
|. -.|.++.++. +.||+++|+.+++.+-. ...+.|+++++|..++..+.++++.|+..+..+|++..
T Consensus 76 ~~-~pvrYL~E~~---------plGtaGgLyhFrdqIl~---g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~t 142 (407)
T KOG1460|consen 76 FK-VPVRYLREDN---------PLGTAGGLYHFRDQILA---GSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVT 142 (407)
T ss_pred cc-cchhhhccCC---------CCCcccceeehhhHHhc---CCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEE
Confidence 11 1144555443 38999999999988853 46689999999999999999999999999999999999
Q ss_pred EccCCcCCCceEEEEc-CCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHH---hh
Q 043870 249 PVDESRASDFGLMKID-ETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLR---WH 324 (526)
Q Consensus 249 ~~~~~~~~~~g~v~~d-~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~---~~ 324 (526)
.+..+.+++||.+..| .+|+|.+|.|||... -++++++|+|+|++++|..+-+ +.
T Consensus 143 kvs~e~asnfG~lV~dP~t~evlHYveKPsTf---------------------vSd~InCGvYlF~~eif~~i~~v~~q~ 201 (407)
T KOG1460|consen 143 KVSREQASNFGCLVEDPSTGEVLHYVEKPSTF---------------------VSDIINCGVYLFTPEIFNAIAEVYRQR 201 (407)
T ss_pred EecHhHhhccCeeeecCCcCceEEeecCcchh---------------------hhcccceeEEEecHHHHHHHHHHHHHH
Confidence 9988889999999988 689999999999865 5789999999999998864321 10
Q ss_pred ---------C----CCCCCh---hhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCCCCc--ccCCCCCcc
Q 043870 325 ---------Y----PEANDF---GSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKF--HFYDPQKPI 386 (526)
Q Consensus 325 ---------~----~~~~d~---~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~--~~~~~~~~i 386 (526)
. +...|| ..|+++.++...++++|..+++|..|.|+.+-..||..++++.... ... ++ .-
T Consensus 202 ~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~L-ak-~p 279 (407)
T KOG1460|consen 202 QDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARL-AK-GP 279 (407)
T ss_pred HhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhh-cC-CC
Confidence 0 111333 3689999999999999999999999999999999999998743211 100 00 01
Q ss_pred cCCCCCCCCeeecCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEE
Q 043870 387 FTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGI 466 (526)
Q Consensus 387 ~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~I 466 (526)
.+.+.+..+++|+- .+++.+.+.||+ |+.||.+++||+|++|++|+++.+ +.|
T Consensus 280 gt~a~IigdVyIhP----sakvhptAkiGP----NVSIga~vrvg~GvRl~~sIIl~d-------------------~ei 332 (407)
T KOG1460|consen 280 GTQAEIIGDVYIHP----SAKVHPTAKIGP----NVSIGANVRVGPGVRLRESIILDD-------------------AEI 332 (407)
T ss_pred CCCceEEeeeEEcC----cceeCCccccCC----CceecCCceecCCceeeeeeeccC-------------------cEe
Confidence 22234555555543 355666777777 889999999999999999999998 899
Q ss_pred CCCCEEeceEECCCCEECCCcEEccC
Q 043870 467 GRDTKIKNCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 467 g~~~~i~~~iI~~~~~Ig~~~~i~~~ 492 (526)
.+|+.+-+||||..+.||+|+.+...
T Consensus 333 ~enavVl~sIigw~s~iGrWaRVe~~ 358 (407)
T KOG1460|consen 333 EENAVVLHSIIGWKSSIGRWARVEGI 358 (407)
T ss_pred eccceEEeeeecccccccceeeeccc
Confidence 99999999999999999999999754
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=348.90 Aligned_cols=371 Identities=17% Similarity=0.256 Sum_probs=251.2
Q ss_pred CCCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcc
Q 043870 89 DPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 89 ~~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
.++++.|||||||.|+||++ ..||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+++.+..
T Consensus 2 ~~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~------- 70 (446)
T PRK14353 2 TDRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKIA------- 70 (446)
T ss_pred ccccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhccC-------
Confidence 46678999999999999984 579999999999 9999999999999999999999999888888875321
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISVC 246 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti~ 246 (526)
.. +.+... . +..|++++++.++..++. ..++|++++||+ +++. ++..+++ |.+.++++++.
T Consensus 71 --~~-~~~~~~--~-------~~~G~~~sl~~a~~~l~~----~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~ 133 (446)
T PRK14353 71 --PD-AEIFVQ--K-------ERLGTAHAVLAAREALAG----GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVL 133 (446)
T ss_pred --CC-ceEEEc--C-------CCCCcHHHHHHHHHHHhc----cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEE
Confidence 01 222221 1 136999999999988852 237899999998 5555 4777776 44566778887
Q ss_pred EEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC
Q 043870 247 CLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP 326 (526)
Q Consensus 247 ~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~ 326 (526)
+.+..+ +..||.+.. ++++|..+.|||..... + ...+++++|+|+|+++.|.++++....
T Consensus 134 ~~~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~---------------~--~~~~~~~~Giy~~~~~~l~~~l~~~~~ 193 (446)
T PRK14353 134 GFRAAD--PTGYGRLIV-KGGRLVAIVEEKDASDE---------------E--RAITLCNSGVMAADGADALALLDRVGN 193 (446)
T ss_pred EEEeCC--CCcceEEEE-CCCeEEEEEECCCCChH---------------H--hhceEEEEEEEEEEHHHHHHHHHhhcc
Confidence 777544 457888877 57899999999864210 0 023588999999999887677765432
Q ss_pred C---CCChhhchHhhhhcC-CcEEEEEec-ceeeecCChhhHHHhchhhc---------CC----CCCcccCCCCCcccC
Q 043870 327 E---ANDFGSEVIPMATKD-FNVQAYLFN-DYWEDIGTIKSFFDANLSLT---------DK----PPKFHFYDPQKPIFT 388 (526)
Q Consensus 327 ~---~~d~~~dil~~li~~-~~V~~~~~~-~~w~dIgt~~d~~~An~~ll---------~~----~~~~~~~~~~~~i~~ 388 (526)
. ...+..++++.+++. .+++++..+ ++|.||+||+||.+|+..+. .. .+...++++.+.|.+
T Consensus 194 ~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 273 (446)
T PRK14353 194 DNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGR 273 (446)
T ss_pred cCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECC
Confidence 1 223456888888764 679999986 57999999999999986442 21 011122333343444
Q ss_pred CCCCCCCeeec-------------CeeEeeeEECCCCEEcc-eeee-ceEECCCcEECCCCEEeceEEECCcccchhHHH
Q 043870 389 SPRFLPPSKIE-------------KCRVQDSIISHGCFLRE-CSVE-HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEI 453 (526)
Q Consensus 389 ~~~~~~~~~i~-------------~~~i~~s~Ig~~~~i~~-~~v~-~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~ 453 (526)
++.++|++.|. .+.|.++.||++|.|+. +.|. +++||++|.|+++|.|.++++..+
T Consensus 274 ~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~--------- 344 (446)
T PRK14353 274 DVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEG--------- 344 (446)
T ss_pred CCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCC---------
Confidence 44444444332 22333345555555543 3332 455555555555555544333322
Q ss_pred HHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcC-CccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 454 AALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVE-EAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 454 ~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~-~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+.|+.++.+.+++||++|+||.++++.+.++.. ....++++++|+.+++ .||++++||+|++|
T Consensus 345 ----------~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 345 ----------AKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVI 413 (446)
T ss_pred ----------CEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEE
Confidence 455666666678888888888888876654432 2456677777776654 57888888888864
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=350.74 Aligned_cols=381 Identities=17% Similarity=0.256 Sum_probs=255.2
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
.+.|||||||.|+||+ ...||+|+|++|+ |||+|++++|...++++|+|++++..+.+.+++.+.
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----------- 69 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE----------- 69 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc-----------
Confidence 4899999999999997 5689999999999 999999999999999999999999888777665421
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ec-ccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LY-RMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~-~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
.+.++.... +.|++++++.+++++++ ...+++++++||+ ++ ..++.++++.|. ++++++.+.+
T Consensus 70 -~~~~v~~~~---------~~Gt~~al~~a~~~l~~---~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~ 134 (456)
T PRK14356 70 -DARFVLQEQ---------QLGTGHALQCAWPSLTA---AGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLT 134 (456)
T ss_pred -CceEEEcCC---------CCCcHHHHHHHHHHHhh---cCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEE
Confidence 133333221 36899999999988863 2347899999999 44 445888888775 5677888877
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC---
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP--- 326 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~--- 326 (526)
.++ +..||++.. ++|+|.+|.|||..... .....+.++++|+|+|++++|..+++....
T Consensus 135 ~~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~---------------~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~ 196 (456)
T PRK14356 135 LPD--PGAYGRVVR-RNGHVAAIVEAKDYDEA---------------LHGPETGEVNAGIYYLRLDAVESLLPRLTNANK 196 (456)
T ss_pred cCC--CCCceEEEE-cCCeEEEEEECCCCChH---------------HhhhhcCeEEEEEEEEEHHHHHHHHHhccCccc
Confidence 765 457998876 57899999998863210 000024678999999999998766654322
Q ss_pred CCCChhhchHhhhhc-CCcEEEEEecc--eeeecCChhhHHHhchhhcCCCC-------------CcccCCC------CC
Q 043870 327 EANDFGSEVIPMATK-DFNVQAYLFND--YWEDIGTIKSFFDANLSLTDKPP-------------KFHFYDP------QK 384 (526)
Q Consensus 327 ~~~d~~~dil~~li~-~~~V~~~~~~~--~w~dIgt~~d~~~An~~ll~~~~-------------~~~~~~~------~~ 384 (526)
..+.+..++++.+++ +.++++|.+.+ .|++|+||+||.+|+..+..+.. ...++++ .+
T Consensus 197 ~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~ 276 (456)
T PRK14356 197 SGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGA 276 (456)
T ss_pred CCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCC
Confidence 122345788888875 46799998865 57999999999999877754321 0111222 22
Q ss_pred cccC------CCCCCCCeee-cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCc-----ccchhH
Q 043870 385 PIFT------SPRFLPPSKI-EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGAD-----YYQTEA 451 (526)
Q Consensus 385 ~i~~------~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~-----~~~~~~ 451 (526)
.+.. .+.++++|.| .++.|.+++|+++|.|++ |.+++++||++|.||++|+|....++|.+ +.+.+.
T Consensus 277 ~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~ 356 (456)
T PRK14356 277 EIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKK 356 (456)
T ss_pred EEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeee
Confidence 2222 2334444444 356666677777777764 55666777766666666666544444332 000000
Q ss_pred HHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcC-CccccCCCeEEccCcE-----EECCCCEECCCcc
Q 043870 452 EIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVE-EAERPSDGFYIRSGIT-----VVLKNTTIKDGTI 525 (526)
Q Consensus 452 ~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~-~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~ 525 (526)
+.+..+ +.|+.++.+.+|+||+++.||.++++.+.++.. -..+++++++|+.+++ .||++++|++|++
T Consensus 357 ---~~i~~~---~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~ 430 (456)
T PRK14356 357 ---AVLGKG---AKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSV 430 (456)
T ss_pred ---eEecCC---cEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCCE
Confidence 011111 122222333356677777777777666544332 2367788888876655 6788888888886
Q ss_pred C
Q 043870 526 I 526 (526)
Q Consensus 526 i 526 (526)
|
T Consensus 431 v 431 (456)
T PRK14356 431 I 431 (456)
T ss_pred E
Confidence 4
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=349.47 Aligned_cols=370 Identities=20% Similarity=0.269 Sum_probs=257.9
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|+|||||||.|+||++ .+||+|+|++|+ |||+|+|++|.+.+ ++|+|++++..+.+.+|+.+.
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~~------------ 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPEW------------ 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhcccc------------
Confidence 6899999999999984 689999999999 99999999999975 899999999988877776421
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
+.++.. . ...|++++++.++.++++ .+.|++++||+ +...++.++++.|.++++++++++.+.
T Consensus 64 -~~~~~~--~-------~~~g~~~ai~~a~~~l~~-----~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~ 128 (448)
T PRK14357 64 -VKIFLQ--E-------EQLGTAHAVMCARDFIEP-----GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADL 128 (448)
T ss_pred -cEEEec--C-------CCCChHHHHHHHHHhcCc-----CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEc
Confidence 222221 1 137999999999988852 37899999998 556679999999988899999998887
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCC--
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA-- 328 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~-- 328 (526)
++ +..||++..| +++| .+.|||..+.. ....+++++|+|+|++++|.++++...+..
T Consensus 129 ~~--~~~~g~v~~d-~g~v-~~~e~~~~~~~-----------------~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~ 187 (448)
T PRK14357 129 ED--PTGYGRIIRD-GGKY-RIVEDKDAPEE-----------------EKKIKEINTGIYVFSGDFLLEVLPKIKNENAK 187 (448)
T ss_pred CC--CCCcEEEEEc-CCeE-EEEECCCCChH-----------------HhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCC
Confidence 64 5679998887 6788 78887653210 002368999999999999877776533221
Q ss_pred C-ChhhchHhhhhcCCcEEEEEecce--eeecCChhhHHHhchhhcCC-------------CCCcccCCCCCcccCCCCC
Q 043870 329 N-DFGSEVIPMATKDFNVQAYLFNDY--WEDIGTIKSFFDANLSLTDK-------------PPKFHFYDPQKPIFTSPRF 392 (526)
Q Consensus 329 ~-d~~~dil~~li~~~~V~~~~~~~~--w~dIgt~~d~~~An~~ll~~-------------~~~~~~~~~~~~i~~~~~~ 392 (526)
. .+..++++.+ .++.+|...+| |.+++++++|..|...+... .+...++++.+.|...+.+
T Consensus 188 ~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i 264 (448)
T PRK14357 188 GEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTII 264 (448)
T ss_pred CeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEE
Confidence 1 2235777666 34888888888 66777999998876544210 0111133333334444333
Q ss_pred C------------CCeee-cCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccch-hHHHHHHhh
Q 043870 393 L------------PPSKI-EKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQT-EAEIAALLA 458 (526)
Q Consensus 393 ~------------~~~~i-~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~-~~~~~~~~~ 458 (526)
. +++.| +++.|.+|+||++|.|..+.+.+|+||+++.|++++.|++.+++|++..-+ ..++
T Consensus 265 ~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i----- 339 (448)
T PRK14357 265 YPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEI----- 339 (448)
T ss_pred cCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceee-----
Confidence 3 33333 345556677777777766677788888888888887776655555431000 0000
Q ss_pred CCCcceEECCCCE------EeceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 459 EGKVPVGIGRDTK------IKNCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 459 ~~~~~~~Ig~~~~------i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
..+.||++++ +.+++||+||.||+++++.+..+..+ ..+++++++|+.+++ .||+++.||+|++|
T Consensus 340 ---~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 340 ---KKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred ---eccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 0123444443 33577888888888888877665554 378899999988864 77899999998875
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=350.41 Aligned_cols=379 Identities=20% Similarity=0.274 Sum_probs=262.6
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
|.++|||||||.|+||+ ..+||+|+|++|+ |||+|++++|.++|++++++++++..+++.+|+.+.
T Consensus 1 m~~~avIlAaG~g~Rl~---~~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~---------- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMK---SKLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDR---------- 66 (458)
T ss_pred CCceEEEEeCCCCcccC---CCCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCC----------
Confidence 45789999999999998 3689999999999 999999999999999999999999988888776521
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-e-cccCHHHHHHHHHHcCCcEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-L-YRMDYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l-~~~dl~~ll~~h~~~~ad~ti~~~ 248 (526)
+.++... +..|+++++++++.++++ ..+.|++++||. + ...++.++++.|.+.+++.++++.
T Consensus 67 ---~~~~~~~---------~~~g~~~al~~a~~~l~~----~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~ 130 (458)
T PRK14354 67 ---SEFALQE---------EQLGTGHAVMQAEEFLAD----KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTA 130 (458)
T ss_pred ---cEEEEcC---------CCCCHHHHHHHHHHHhcc----cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEE
Confidence 2222211 136999999999988852 236799999997 4 455689999999888888888777
Q ss_pred EccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-
Q 043870 249 PVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE- 327 (526)
Q Consensus 249 ~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~- 327 (526)
+.++ +..|+.+..|++++|..|.|||.... . +...+.+++|+|+|+++.|.+.++...++
T Consensus 131 ~~~~--~~~~g~v~~d~~~~V~~~~ek~~~~~---------------~--~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~ 191 (458)
T PRK14354 131 IAEN--PTGYGRIIRNENGEVEKIVEQKDATE---------------E--EKQIKEINTGTYCFDNKALFEALKKISNDN 191 (458)
T ss_pred EcCC--CCCceEEEEcCCCCEEEEEECCCCCh---------------H--HhcCcEEEEEEEEEEHHHHHHHHHHhCccc
Confidence 6643 45688888888899999999875310 0 01346789999999998776676654332
Q ss_pred --CCChhhchHhhhhcC-CcEEEEEecce--eeecCChhhHHHhchhhcCCC------CCcccCCC-------CCcccCC
Q 043870 328 --ANDFGSEVIPMATKD-FNVQAYLFNDY--WEDIGTIKSFFDANLSLTDKP------PKFHFYDP-------QKPIFTS 389 (526)
Q Consensus 328 --~~d~~~dil~~li~~-~~V~~~~~~~~--w~dIgt~~d~~~An~~ll~~~------~~~~~~~~-------~~~i~~~ 389 (526)
...+..++++.+++. .++++|.++++ |+++++++||..|+..+..+. +...++++ .+.+.+.
T Consensus 192 ~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~ 271 (458)
T PRK14354 192 AQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSD 271 (458)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCC
Confidence 122346788888764 67999999875 567779999999986543211 11122222 2223333
Q ss_pred CC------------CCCCeee-cCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccch-hHHHHH
Q 043870 390 PR------------FLPPSKI-EKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQT-EAEIAA 455 (526)
Q Consensus 390 ~~------------~~~~~~i-~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~-~~~~~~ 455 (526)
+. +++++.| .++.|.++.||++|.|+++.+.+++||++|.|+++|.|...+++|++..-+ ..++
T Consensus 272 ~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i-- 349 (458)
T PRK14354 272 TVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEI-- 349 (458)
T ss_pred CEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEE--
Confidence 33 3333333 345566677788888877777888888888888888887555555541000 0000
Q ss_pred HhhCCCcceEECCCCE------EeceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEECCC
Q 043870 456 LLAEGKVPVGIGRDTK------IKNCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIKDG 523 (526)
Q Consensus 456 ~~~~~~~~~~Ig~~~~------i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~~g 523 (526)
..+.|++++. +.+++||+||.||.++.+.|.++... ..+++++++|+.+++ .||++++||+|
T Consensus 350 ------~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~ 423 (458)
T PRK14354 350 ------KKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAG 423 (458)
T ss_pred ------eeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCC
Confidence 0122333333 34567777777788877777554433 466778887776654 67899999998
Q ss_pred ccC
Q 043870 524 TII 526 (526)
Q Consensus 524 t~i 526 (526)
++|
T Consensus 424 ~~v 426 (458)
T PRK14354 424 STI 426 (458)
T ss_pred CEE
Confidence 875
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=340.86 Aligned_cols=375 Identities=19% Similarity=0.268 Sum_probs=266.1
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
+.+||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+.+++|++++..+.+.+|+.+..
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----------- 66 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP----------- 66 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC-----------
Confidence 6899999999999985 689999999999 9999999999999999999999998888888875311
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
.+.++... ++.|++++++.++.++++ ..+++++++||+ +...++.++++.|.+.++++++++.+.
T Consensus 67 ~i~~v~~~---------~~~G~~~sv~~~~~~l~~----~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 133 (450)
T PRK14360 67 GLEFVEQQ---------PQLGTGHAVQQLLPVLKG----FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL 133 (450)
T ss_pred CeEEEEeC---------CcCCcHHHHHHHHHHhhc----cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 14444321 136899999999888852 236799999999 445679999999998888888877766
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC---
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE--- 327 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~--- 327 (526)
++ +..||.+..|++|+|.+|.|||..... +..++++++|+|+|+++.|.++++...+.
T Consensus 134 ~~--~~~~g~~~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~ 194 (450)
T PRK14360 134 PN--PKGYGRVFCDGNNLVEQIVEDRDCTPA-----------------QRQNNRINAGIYCFNWPALAEVLPKLSSNNDQ 194 (450)
T ss_pred CC--CCCccEEEECCCCCEEEEEECCCCChh-----------------HhcCcEEEEEEEEEEHHHHHHHHhhccccccC
Confidence 54 456999999999999999999863210 01356899999999999888887664332
Q ss_pred CCChhhchHhhhhcCCcEEEEEecce--eeecCChhhHHHhchhhcCCC------CCccc-------------------C
Q 043870 328 ANDFGSEVIPMATKDFNVQAYLFNDY--WEDIGTIKSFFDANLSLTDKP------PKFHF-------------------Y 380 (526)
Q Consensus 328 ~~d~~~dil~~li~~~~V~~~~~~~~--w~dIgt~~d~~~An~~ll~~~------~~~~~-------------------~ 380 (526)
...+..+.++.+. ++..|...++ |..+++++++..|...+.... +...+ +
T Consensus 195 ~e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i 271 (450)
T PRK14360 195 KEYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVII 271 (450)
T ss_pred CceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEE
Confidence 1233456666653 3566666765 466999999988876542110 00111 2
Q ss_pred CCCCcccCCCCCCCCeee-cCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhC
Q 043870 381 DPQKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAE 459 (526)
Q Consensus 381 ~~~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~ 459 (526)
++.+.+.+.+.+++++.| .++.|.++.|+++|.|+.+.+.+++||++++|+.+|.|.+.+++|++.. ++.
T Consensus 272 ~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~---------Ig~ 342 (450)
T PRK14360 272 EPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCR---------IGN 342 (450)
T ss_pred CCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceE---------ECC
Confidence 223334444455666666 5667778888899888777778888888888888888876555554310 000
Q ss_pred CC--cceEECCCCEE------eceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEECCCcc
Q 043870 460 GK--VPVGIGRDTKI------KNCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIKDGTI 525 (526)
Q Consensus 460 ~~--~~~~Ig~~~~i------~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~ 525 (526)
+. ..+.||++++| .+++|+++|.||+++++.+..++.. ..++|++++|+.+++ .||++++|++|++
T Consensus 343 ~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~ 422 (450)
T PRK14360 343 FVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGST 422 (450)
T ss_pred CEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCE
Confidence 00 01223333333 3467888888888888887665554 457788888886654 6688888888876
Q ss_pred C
Q 043870 526 I 526 (526)
Q Consensus 526 i 526 (526)
+
T Consensus 423 v 423 (450)
T PRK14360 423 I 423 (450)
T ss_pred E
Confidence 4
|
|
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=307.87 Aligned_cols=233 Identities=27% Similarity=0.504 Sum_probs=200.9
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChh-HHHHHhhhcccCCCCcccCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQ-SLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~-~l~~~l~~~~~~~~~~~~~~ 171 (526)
|+|||||||.||||+|+|...||+|+||.+| |||+|+|+.|..+||++|.|+++++.. .+++++ ++|.+|+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~ll------Gdgs~~g- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKELL------GDGSDFG- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhhh------cCccccC-
Confidence 7899999999999999999999999999999 999999999999999999999998554 444443 4566666
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEcc
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVD 251 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~ 251 (526)
+.+-+..|.. +.|-++|+..+.+++.+ ++|++..||.++..++.++++.+.++..+.++++.+++
T Consensus 73 --v~itY~~Q~~-------p~GlA~Av~~a~~fv~~------~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~ 137 (286)
T COG1209 73 --VDITYAVQPE-------PDGLAHAVLIAEDFVGD------DDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD 137 (286)
T ss_pred --cceEEEecCC-------CCcHHHHHHHHHhhcCC------CceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC
Confidence 4445555654 48999999999999976 99999999998877999999999988888999999998
Q ss_pred CCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-CCC
Q 043870 252 ESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-AND 330 (526)
Q Consensus 252 ~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-~~d 330 (526)
+ +++||++++|++++|+.+.|||..+ .|+++-+|+|+|++++|. .++...|+ +.+
T Consensus 138 d--P~rfGV~e~d~~~~v~~l~EKP~~P---------------------~SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGE 193 (286)
T COG1209 138 D--PSRYGVVEFDEDGKVIGLEEKPKEP---------------------KSNLAVTGLYFYDPSVFE-AIKQIKPSARGE 193 (286)
T ss_pred C--cccceEEEEcCCCcEEEeEECCCCC---------------------CCceeEEEEEEeChHHHH-HHHcCCCCCCCc
Confidence 6 6789999999999999999999987 689999999999999995 67776665 344
Q ss_pred hh-hchHhhhhcC-CcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 331 FG-SEVIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 331 ~~-~dil~~li~~-~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
++ .|+++.++++ ..+......|.|.|.||++||.+|+..+..
T Consensus 194 lEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 194 LEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred eEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 53 7889888875 556666778899999999999999998865
|
|
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=303.94 Aligned_cols=240 Identities=35% Similarity=0.622 Sum_probs=194.7
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcE-EEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKK-IYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~-I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
+|||||||.||||+|||..+||||+|++|+||||+|+|++|.++|+++ |+|++++..+.+.+|+.+.++++
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~~~~-------- 72 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGYKFG-------- 72 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSGGGT--------
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeeccccccccccccccccc--------
Confidence 699999999999999999999999999999999999999999999999 55555588888999998655332
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCC-CCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEcc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRN-IENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVD 251 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~-~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~ 251 (526)
+.+....|.. ..||++||+++...++. .. .++|++++||++++.++.++++.|.++++++++++...+
T Consensus 73 -~~i~~i~~~~-------~~Gta~al~~a~~~i~~---~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~ 141 (248)
T PF00483_consen 73 -VKIEYIVQPE-------PLGTAGALLQALDFIEE---EDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVP 141 (248)
T ss_dssp -EEEEEEEESS-------SSCHHHHHHHTHHHHTT---SEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEE
T ss_pred -ccceeeeccc-------ccchhHHHHHHHHHhhh---ccccceEEEEeccccccchhhhHHHhhhcccccccccccccc
Confidence 3332222332 26999999999999974 11 245999999999999999999999999886544444444
Q ss_pred CCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHH--hhCCCCC
Q 043870 252 ESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLR--WHYPEAN 329 (526)
Q Consensus 252 ~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~--~~~~~~~ 329 (526)
..+++.||++.+|++|+|.+|.|||..+. .+.++++|+|+|++++|..+++ ...+...
T Consensus 142 ~~~~~~~g~v~~d~~~~V~~~~EKP~~~~--------------------~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~ 201 (248)
T PF00483_consen 142 VEDPSRYGVVEVDEDGRVIRIVEKPDNPN--------------------ASNLINTGIYIFKPEIFDFLLEMIKENARGE 201 (248)
T ss_dssp SSGGGGSEEEEEETTSEEEEEEESCSSHS--------------------HSSEEEEEEEEEETHHHHHHHHHHHTCTTSS
T ss_pred ccccccceeeeeccceeEEEEeccCcccc--------------------cceeccCceEEEcchHHHHHhhhhhccchhh
Confidence 55678999999999999999999998652 1678999999999999976655 2223345
Q ss_pred ChhhchHhhhhcCC-cEEEEEecc--eeeecCChhhHHHhchhhcC
Q 043870 330 DFGSEVIPMATKDF-NVQAYLFND--YWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 330 d~~~dil~~li~~~-~V~~~~~~~--~w~dIgt~~d~~~An~~ll~ 372 (526)
++..++++.++++. .+.++.+++ +|.|||||++|.+||+.+++
T Consensus 202 ~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 202 DFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 66789999999876 556778888 79999999999999998865
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=307.80 Aligned_cols=348 Identities=20% Similarity=0.324 Sum_probs=251.5
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEecc-ChhHHHHHhhhcccCCCCcc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQF-NSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~-~~~~l~~~l~~~~~~~~~~~ 168 (526)
+.+++||++|||.||||..+++..||+||||+++ |||+|+|.+|.++|+++|+|++.. .+..++..|.+.+.....
T Consensus 7 ~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~~-- 83 (433)
T KOG1462|consen 7 MSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKKR-- 83 (433)
T ss_pred hHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCccccc--
Confidence 6778999999999999999999999999999999 999999999999999999999986 344666777655432211
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~ 248 (526)
...+++-...+.. .||+++|+.....+.. +|||+++||.+.+.++..++++++..++...++..
T Consensus 84 --~~~v~ip~~~~~d--------~gtadsLr~Iy~kikS------~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~ 147 (433)
T KOG1462|consen 84 --PDYVEIPTDDNSD--------FGTADSLRYIYSKIKS------EDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIG 147 (433)
T ss_pred --ccEEEeecccccc--------cCCHHHHhhhhhhhcc------CCEEEEecccccCCCcHHHHHHHhccChhHhHHhc
Confidence 0124433333222 7999999999888863 79999999999999999999999988776555544
Q ss_pred EccCC---------cCCCceEEEEcCC-CCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHH
Q 043870 249 PVDES---------RASDFGLMKIDET-GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLL 318 (526)
Q Consensus 249 ~~~~~---------~~~~~g~v~~d~~-g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~ 318 (526)
..... ....+.++-++++ +|+. |.... .+..+.+++..++|+..|.... .+.+.++++|+|+.++++
T Consensus 148 ~~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~-y~~~~-~d~~~~l~i~~slL~~~prltl-~t~L~dahiY~~k~~v~d 224 (433)
T KOG1462|consen 148 NALSEVPIPGQKGKKKQARDVIGINEDTERLA-YSSDS-ADEEEPLVIRKSLLWNHPRLTL-TTKLVDAHIYVFKHWVID 224 (433)
T ss_pred cccccccccCcccccccccceeeeccccceeE-EeecC-CcCCCceehhhhhhhcCCceEE-eccccceeeeeeHHHHHH
Confidence 32211 1112334444443 3433 33222 2234566777777776665443 678999999999999996
Q ss_pred HHHHhhCCCCCChhhchHhhhhcC---------------------------------CcEEEEEec--ceeeecCChhhH
Q 043870 319 KVLRWHYPEANDFGSEVIPMATKD---------------------------------FNVQAYLFN--DYWEDIGTIKSF 363 (526)
Q Consensus 319 ~ll~~~~~~~~d~~~dil~~li~~---------------------------------~~V~~~~~~--~~w~dIgt~~d~ 363 (526)
+|... +.-.+|..+++|.+++. .++++|... .-+.+++|.-.|
T Consensus 225 -~l~~~-~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y 302 (433)
T KOG1462|consen 225 -LLSEK-ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSY 302 (433)
T ss_pred -HHhcC-CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHH
Confidence 55432 33445666677766652 233444443 457899999999
Q ss_pred HHhch--hhcCCCCCcccCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceE
Q 043870 364 FDANL--SLTDKPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTM 440 (526)
Q Consensus 364 ~~An~--~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v 440 (526)
+++|+ .+....+...+++.. ++.-...-.+++++++|.|+ .+.|+.|+||.+|.||++++|.+|+
T Consensus 303 ~eiN~~k~~~~l~~e~~~~k~~------------~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSi 370 (433)
T KOG1462|consen 303 MEINRDKKLKKLCSEAKFVKNY------------VKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSI 370 (433)
T ss_pred HhhhHHHHHHHhccccccccch------------hhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeE
Confidence 99994 343322222211110 01111222368899999998 5788999999999999999999999
Q ss_pred EECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccC
Q 043870 441 MMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~ 492 (526)
+|.+ |.||+|+.|.|||||++|.||+++.+.||
T Consensus 371 lm~n-------------------V~vg~G~~IensIIg~gA~Ig~gs~L~nC 403 (433)
T KOG1462|consen 371 LMDN-------------------VVVGDGVNIENSIIGMGAQIGSGSKLKNC 403 (433)
T ss_pred eecC-------------------cEecCCcceecceecccceecCCCeeeee
Confidence 9998 89999999999999999999999999987
|
|
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=306.30 Aligned_cols=243 Identities=19% Similarity=0.278 Sum_probs=191.9
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCC------
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLG------ 164 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~------ 164 (526)
..|+|||||||.||||+|+|..+||||+||+|+ |||+|++++|.++|+++|+|+++|.++++.+|+.+.+.+.
T Consensus 2 ~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~ 80 (297)
T TIGR01105 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQR 80 (297)
T ss_pred CceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHHh
Confidence 468999999999999999999999999999999 9999999999999999999999999999999996543210
Q ss_pred ----------CCcccCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecc--------
Q 043870 165 ----------DGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYR-------- 226 (526)
Q Consensus 165 ----------~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~-------- 226 (526)
.+.+++ +.+....| .++.||++|++++..++++ ++|++++||++++
T Consensus 81 ~~~~~~~~~~~~~~~~---~~i~~~~q-------~~~lGtg~Av~~a~~~l~~------~~flvv~gD~l~~~~~~~~~~ 144 (297)
T TIGR01105 81 VKRQLLAEVQSICPPG---VTIMNVRQ-------AQPLGLGHSILCARPVVGD------NPFVVVLPDIIIDDATADPLR 144 (297)
T ss_pred cchhhhhhhhhcCCCC---ceEEEeeC-------CCcCchHHHHHHHHHHhCC------CCEEEEECCeeccccccccch
Confidence 011111 22222223 2468999999999999864 6899999999987
Q ss_pred cCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEE----cCCCC---eeeeeccCCccccccccccccccccchhhhc
Q 043870 227 MDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKI----DETGR---IRQFLEKPKGENLRSMQIDTTALGLSAQEAR 299 (526)
Q Consensus 227 ~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~----d~~g~---V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~ 299 (526)
.++.++++.|.++++.+ +++..+.. .++.||++.+ |++|+ |.+|.|||..+..
T Consensus 145 ~~l~~li~~~~~~~~~~-~~~~~~~~-~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~------------------ 204 (297)
T TIGR01105 145 YNLAAMIARFNETGRSQ-VLAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------ 204 (297)
T ss_pred hHHHHHHHHHHHhCCcE-EEEEEcCC-CCccceEEEecccccCCCCeeeEeEEEECCCCccc------------------
Confidence 58999999998777765 44444432 3678999998 44564 5899999964310
Q ss_pred CCCceeeeeEEEEcHHHHHHHHHhhCCC-CC-ChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhc
Q 043870 300 NFPYIASMGIYLFKTEVLLKVLRWHYPE-AN-DFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 300 ~~~~l~~~Giyif~~~~l~~ll~~~~~~-~~-d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll 371 (526)
..++++++|+|+|++++|. .++...+. .. ....++++.+++++++++|.++|+|+|||+|++|.+||.++.
T Consensus 205 ~~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 205 LDSDLMAVGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred CCcCEEEEEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 1367899999999999886 55553332 12 224689999999999999999999999999999999998874
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=303.39 Aligned_cols=244 Identities=18% Similarity=0.274 Sum_probs=193.4
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCC-----
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLG----- 164 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~----- 164 (526)
++.|+|||||||.||||+|+|..+||||+||+|+ |||+|++++|.++||++|+|++++..+++.+|+...|++.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 3579999999999999999999999999999999 9999999999999999999999999999999997543221
Q ss_pred -----------CCcccCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecc-------
Q 043870 165 -----------DGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYR------- 226 (526)
Q Consensus 165 -----------~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~------- 226 (526)
....++ +.+....|.. +.||++|+++++.++.+ ++|+|++||++++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~~-------~lGtg~al~~a~~~l~~------~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQGQ-------PLGLGHSILCARPAIGD------NPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecCC-------cCchHHHHHHHHHHcCC------CCEEEEECCeeccCcccccc
Confidence 000111 2233333332 48999999999998853 6799999999886
Q ss_pred -cCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEEc----CCC---CeeeeeccCCccccccccccccccccchhhh
Q 043870 227 -MDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKID----ETG---RIRQFLEKPKGENLRSMQIDTTALGLSAQEA 298 (526)
Q Consensus 227 -~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d----~~g---~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~ 298 (526)
.|+.++++.|.+.+++++ ++..... .+..||++.+| ++| +|..|.|||..+..
T Consensus 144 ~~dl~~li~~h~~~~~~~~-~~~~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQV-LAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEE-EEEECCC-CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 479999999988887754 4444332 56789999986 356 78999999974310
Q ss_pred cCCCceeeeeEEEEcHHHHHHHHHhhCCC--CCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhc
Q 043870 299 RNFPYIASMGIYLFKTEVLLKVLRWHYPE--ANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 299 ~~~~~l~~~Giyif~~~~l~~ll~~~~~~--~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll 371 (526)
..++++++|+|+|++++|..+ +...+. ......++++.+++++++.+|.++|+|+|||+|++|.+|+.++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPEL-ERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHH-HhCCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHH
Confidence 135789999999999998755 433232 12334689999999999999999999999999999999999983
|
|
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=291.93 Aligned_cols=232 Identities=25% Similarity=0.437 Sum_probs=194.8
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|++||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+|+.+ + . .+++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~-~--~--~~~~-- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKE-Y--E--KKLG-- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhc-c--c--ccCC--
Confidence 6899999999999999999999999999999 99999999999999999999999999999999863 2 0 0111
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccC
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDE 252 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~ 252 (526)
+.++...+. ...|++++++.+...+.. ..++|+|++||++++.++.++++.|+++++++++++.+.++
T Consensus 73 -~~i~~~~~~-------~~~G~~~al~~a~~~~~~----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (233)
T cd06425 73 -IKITFSIET-------EPLGTAGPLALARDLLGD----DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED 140 (233)
T ss_pred -eEEEeccCC-------CCCccHHHHHHHHHHhcc----CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 334332222 137999999999988852 24679999999999999999999999999999999987754
Q ss_pred CcCCCceEEEEcC-CCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCCh
Q 043870 253 SRASDFGLMKIDE-TGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDF 331 (526)
Q Consensus 253 ~~~~~~g~v~~d~-~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d~ 331 (526)
+..||++.+|+ +++|.+|.|||..+ .++++++|+|+|++++|..+ +. ...++
T Consensus 141 --~~~~g~v~~d~~~~~v~~~~ekp~~~---------------------~~~~~~~Giyi~~~~~l~~l-~~---~~~~~ 193 (233)
T cd06425 141 --PSKYGVVVHDENTGRIERFVEKPKVF---------------------VGNKINAGIYILNPSVLDRI-PL---RPTSI 193 (233)
T ss_pred --ccccCeEEEcCCCCEEEEEEECCCCC---------------------CCCEEEEEEEEECHHHHHhc-cc---Ccccc
Confidence 45799999987 78999999998754 35679999999999999644 32 22344
Q ss_pred hhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhc
Q 043870 332 GSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 332 ~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll 371 (526)
..++++.++++.+|.+|.++++|.||||+++|++|+..++
T Consensus 194 ~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 194 EKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 5689999999999999999999999999999999998764
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=296.95 Aligned_cols=235 Identities=22% Similarity=0.387 Sum_probs=193.8
Q ss_pred EEEEcCC--CCccccCccCCCCccceeeCCcchhHHHHHHHHHh-cCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 95 SIILGGG--AGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCIN-SGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 95 aIILAaG--~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
||||||| .||||+|||..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+++.+|+.+... .++
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~-----~~~- 73 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQ-----EFN- 73 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhccc-----ccC-
Confidence 6999999 8999999999999999999999 999999999999 69999999999999999999974310 111
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEcc
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVD 251 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~ 251 (526)
..+.++. +.. ..||+++++.+..+++. ...++|+|++||++++.|+.++++.|+++++++|+++.+++
T Consensus 74 ~~i~~~~--~~~-------~~Gt~~al~~a~~~l~~---~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~ 141 (257)
T cd06428 74 VPIRYLQ--EYK-------PLGTAGGLYHFRDQILA---GNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEAS 141 (257)
T ss_pred ceEEEec--CCc-------cCCcHHHHHHHHHHhhc---cCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEcc
Confidence 1133322 221 37999999999988852 22478999999999999999999999999999999998875
Q ss_pred CCcCCCceEEEEc-CCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC---
Q 043870 252 ESRASDFGLMKID-ETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE--- 327 (526)
Q Consensus 252 ~~~~~~~g~v~~d-~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~--- 327 (526)
.+.+..||++..| ++|+|..|.|||... .+.++++|+|+|++++|. .++...+.
T Consensus 142 ~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~---------------------~~~~~~~Giyi~~~~~~~-~i~~~~~~~~~ 199 (257)
T cd06428 142 REQASNYGCIVEDPSTGEVLHYVEKPETF---------------------VSDLINCGVYLFSPEIFD-TIKKAFQSRQQ 199 (257)
T ss_pred ccccccccEEEEeCCCCeEEEEEeCCCCc---------------------ccceEEEEEEEECHHHHH-HHhhhcccccc
Confidence 5556789999998 679999999998743 356899999999999985 44432221
Q ss_pred ---------------CCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhh
Q 043870 328 ---------------ANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 328 ---------------~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~l 370 (526)
..++..++++.++++.++++|.++|||.||+|+++|++||+.+
T Consensus 200 e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 200 EAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred ccccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 1234478999999999999999999999999999999999864
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=304.12 Aligned_cols=379 Identities=16% Similarity=0.273 Sum_probs=277.4
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhh-cccCCCCccc
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISR-TYNLGDGMNF 169 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~-~~~~~~~~~~ 169 (526)
...+||+||.-+-+||+|+|...|+.|||+.+. |||+|+|++|..+|+.+++|++..+..++.+|+.+ .|+.. +
T Consensus 23 ~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~----~ 97 (673)
T KOG1461|consen 23 HRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLP----M 97 (673)
T ss_pred cceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhcccccc----c
Confidence 458999999999999999999999999999999 99999999999999999999999999999999986 44221 1
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHH-----cCCcEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHIN-----SGGDIS 244 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~-----~~ad~t 244 (526)
. ..+..+... . ....++++|..-.. .-..++|++++||++.++++.++++.|++ +++-+|
T Consensus 98 ~-~~v~ti~s~-~--------~~S~GDamR~id~k-----~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMT 162 (673)
T KOG1461|consen 98 S-FIVVTICSG-E--------SRSVGDAMRDIDEK-----QLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMT 162 (673)
T ss_pred c-ceEEEEcCC-C--------cCcHHHHHHHHHhc-----ceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEE
Confidence 1 113323222 1 14677777764321 12348999999999999999999999965 355688
Q ss_pred EEEEEccCCcCCCceEEEEcC-CCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHh
Q 043870 245 VCCLPVDESRASDFGLMKIDE-TGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 245 i~~~~~~~~~~~~~g~v~~d~-~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
|+..+.......+--++.+|. +.++..|.+.... ...++.+.++|--.+ +...+.++.+++|-+|+++++..+-++
T Consensus 163 mv~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~~--~~~~~l~~sl~d~~~-~v~vr~DL~dc~IdIcS~~V~sLF~dN 239 (673)
T KOG1461|consen 163 MVFKESSTRETTEQVVIAVDSRTSRLLHYQKCVRE--KHDIQLDLSLFDSND-EVEVRNDLLDCQIDICSPEVLSLFTDN 239 (673)
T ss_pred EEEeccccccCCcceEEEEcCCcceEEeehhhccc--ccccccCHHHhcCCC-cEEEEccCCCceeeEecHhHHHHhhhc
Confidence 887765321223334555664 6789988862221 123566666665443 334488999999999999999744333
Q ss_pred h-CCCCCChhhchHhhhhcCCcEEEEEecc--eeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCC---------CC
Q 043870 324 H-YPEANDFGSEVIPMATKDFNVQAYLFND--YWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTS---------PR 391 (526)
Q Consensus 324 ~-~~~~~d~~~dil~~li~~~~V~~~~~~~--~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~---------~~ 391 (526)
. |+...||-..+|-.-+-+.+|+++.... |..++.+..+|...++.++++|....+ |...+... ..
T Consensus 240 FDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~V--pd~~~~~~q~~~~~r~~IY 317 (673)
T KOG1461|consen 240 FDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLV--PDINFSGNQTFSLERRNIY 317 (673)
T ss_pred ccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhccccc--ccccCCCCceeeecccccc
Confidence 1 2334566666666666789999998875 999999999999999999999832211 22222210 01
Q ss_pred CCCCeee-cCeeEe-eeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECC
Q 043870 392 FLPPSKI-EKCRVQ-DSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGR 468 (526)
Q Consensus 392 ~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 468 (526)
-++-+.+ +.|.+. ++.||.|+.|+. +.|.+|+||.+|+||++|+|+++.++.+ |+||+
T Consensus 318 k~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Igd 378 (673)
T KOG1461|consen 318 KSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIGD 378 (673)
T ss_pred cCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEECC
Confidence 1233333 233332 477888888874 6678999999999999999999999988 89999
Q ss_pred CCEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 469 DTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 469 ~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
||.|++|+|+.+++|+.++++... ++|+.+ +|+|++-++..+++|
T Consensus 379 nc~I~~aii~d~v~i~~~~~l~~g------------~vl~~~-VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 379 NCRIDHAIICDDVKIGEGAILKPG------------SVLGFG-VVVGRNFVLPKNSKV 423 (673)
T ss_pred CceEeeeEeecCcEeCCCcccCCC------------cEEeee-eEeCCCccccccccc
Confidence 999999999999999999998654 667666 344777777777553
|
|
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=283.79 Aligned_cols=231 Identities=24% Similarity=0.388 Sum_probs=187.2
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccC-hhHHHHHhhhcccCCCCcccCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFN-SQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~-~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|++++. .+++.+|+.... .|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~~------~~~- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGS------DLG- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhccc------ccC-
Confidence 6899999999999999999999999999999 9999999999999999999998765 467788886422 222
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCee-cccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHL-YRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l-~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
+.+....+. ...|++++++.+..++++ +++++++||++ ++.++.++++.|.++++++++++.+.
T Consensus 73 --~~i~~~~~~-------~~~G~~~al~~a~~~~~~------~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
T cd02538 73 --IRITYAVQP-------KPGGLAQAFIIGEEFIGD------DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEV 137 (240)
T ss_pred --ceEEEeeCC-------CCCCHHHHHHHHHHhcCC------CCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 233322232 137999999999988853 67999999984 56679999999988888999988877
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-CC
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-AN 329 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-~~ 329 (526)
++ +..||++.+|++|+|..|.|||..+ .+.++++|+|+|++++| ++++...+. ..
T Consensus 138 ~~--~~~~g~v~~d~~g~v~~~~ekp~~~---------------------~~~~~~~Giyi~~~~~l-~~l~~~~~~~~~ 193 (240)
T cd02538 138 ND--PERYGVVEFDENGRVLSIEEKPKKP---------------------KSNYAVTGLYFYDNDVF-EIAKQLKPSARG 193 (240)
T ss_pred Cc--hhcCceEEecCCCcEEEEEECCCCC---------------------CCCeEEEEEEEECHHHH-HHHHhcCCCCCC
Confidence 65 4579999999899999999998753 34678999999999988 466643322 22
Q ss_pred Ch-hhchHhhhhcCCcEEEEEec--ceeeecCChhhHHHhchhh
Q 043870 330 DF-GSEVIPMATKDFNVQAYLFN--DYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 330 d~-~~dil~~li~~~~V~~~~~~--~~w~dIgt~~d~~~An~~l 370 (526)
++ ..++++.++++.++.++.+. ++|.||||+++|++||..+
T Consensus 194 ~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 194 ELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred eEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 22 36899999988777777766 9999999999999999865
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=289.74 Aligned_cols=235 Identities=22% Similarity=0.368 Sum_probs=188.5
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEecc-ChhHHHHHhhhcccCCCCcc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQF-NSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~-~~~~l~~~l~~~~~~~~~~~ 168 (526)
|+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+|+++|+|++++ ..+.+.+|+.+. .+
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~g------~~ 73 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDG------SQ 73 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcCc------cc
Confidence 3469999999999999999999999999999999 999999999999999999988764 456677787642 23
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCee-cccCHHHHHHHHHHcCCcEEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHL-YRMDYMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l-~~~dl~~ll~~h~~~~ad~ti~~ 247 (526)
|+-. +.+. .|.. +.|+++|+..+.+++.+ ++++++.||.+ ++.++.++++.|.+.++++|+++
T Consensus 74 ~g~~-i~y~--~q~~-------~~Gta~Al~~a~~~i~~------~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~ 137 (292)
T PRK15480 74 WGLN-LQYK--VQPS-------PDGLAQAFIIGEEFIGG------DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFA 137 (292)
T ss_pred cCce-eEEE--ECCC-------CCCHHHHHHHHHHHhCC------CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEE
Confidence 3311 3332 2322 37999999999998853 56888999974 58899999999988888899988
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
.++++ ++.||++.+|++|+|++|.|||..+ .++++++|+|+|+++++. .++...+.
T Consensus 138 ~~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p---------------------~s~~a~~GiY~~~~~v~~-~~~~~~~~ 193 (292)
T PRK15480 138 YHVND--PERYGVVEFDQNGTAISLEEKPLQP---------------------KSNYAVTGLYFYDNDVVE-MAKNLKPS 193 (292)
T ss_pred EEcCC--cccCcEEEECCCCcEEEEEECCCCC---------------------CCCEEEEEEEEEChHHHH-HHhhcCCC
Confidence 88755 5689999999899999999999754 467899999999999885 55544333
Q ss_pred -CCCh-hhchHhhhhcCCcEEE-EEecc-eeeecCChhhHHHhchhhc
Q 043870 328 -ANDF-GSEVIPMATKDFNVQA-YLFND-YWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 328 -~~d~-~~dil~~li~~~~V~~-~~~~~-~w~dIgt~~d~~~An~~ll 371 (526)
..++ ..++++.++++.++.+ +...+ +|+|+||+++|.+|+..+.
T Consensus 194 ~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 194 ARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 2223 3688998888776644 56667 4999999999999998774
|
|
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=286.17 Aligned_cols=244 Identities=22% Similarity=0.335 Sum_probs=190.1
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCc-ccCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGM-NFGD 171 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~-~~~~ 171 (526)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+.+.+.+.... ..+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999999 9999999999999999999999999999999997544221000 0000
Q ss_pred -----------CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeeccc---CHHHHHHHHH
Q 043870 172 -----------GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRM---DYMDFVQHHI 237 (526)
Q Consensus 172 -----------~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~---dl~~ll~~h~ 237 (526)
..+.+....+ .++.||+++++.+..++++ ++|+|++||+++.. ++.++++.|.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~Gt~~al~~~~~~i~~------~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVRQ-------KEPLGLGHAVLCAKPFIGD------EPFAVLLGDDLIDSKEPCLKQLIEAYE 146 (267)
T ss_pred HHHhhhhhcccCCceEEEEEc-------CCCCChHHHHHHHHHHhCC------CceEEEECCeEEeCCchHHHHHHHHHH
Confidence 0012212122 2347999999999988863 78999999997764 4999999998
Q ss_pred HcCCcEEEEEEEccCCcCCCceEEEEcC----CCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEc
Q 043870 238 NSGGDISVCCLPVDESRASDFGLMKIDE----TGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFK 313 (526)
Q Consensus 238 ~~~ad~ti~~~~~~~~~~~~~g~v~~d~----~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~ 313 (526)
+.+++ ++++...+.+++..||++.+|+ .++|..|.|||..... .++++++|+|+|+
T Consensus 147 ~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (267)
T cd02541 147 KTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (267)
T ss_pred HhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcC
Confidence 87776 4555566544567899999985 2589999999864211 3568999999999
Q ss_pred HHHHHHHHHhhCCC--CCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhc
Q 043870 314 TEVLLKVLRWHYPE--ANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 314 ~~~l~~ll~~~~~~--~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll 371 (526)
+++|..+ +..... ...+..++++.++++.+|++|.++++|.||||+++|++||+.+.
T Consensus 207 ~~~~~~l-~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 207 PDIFDIL-ENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHHHH-HhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 9988654 332111 22335688999998889999999999999999999999999874
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=288.26 Aligned_cols=231 Identities=25% Similarity=0.422 Sum_probs=187.1
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEec-cChhHHHHHhhhcccCCCCcccCCC
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQ-FNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~-~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+|+++|+|+++ +..+.+.+|+.+ +..|+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~------g~~~g-- 71 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD------GSQWG-- 71 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc------ccccC--
Confidence 589999999999999999999999999999 99999999999999999998886 555677777753 22333
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccCHHHHHHHHHHcCCcEEEEEEEcc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMDYMDFVQHHINSGGDISVCCLPVD 251 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~dl~~ll~~h~~~~ad~ti~~~~~~ 251 (526)
+.+....|.. +.||++|++.+..++.+ ++++++.||+ ++..++.++++.|.+.++++|+++.+++
T Consensus 72 -~~i~~~~q~~-------~~Gta~al~~a~~~l~~------~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~ 137 (286)
T TIGR01207 72 -VNLSYAVQPS-------PDGLAQAFIIGEDFIGG------DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS 137 (286)
T ss_pred -ceEEEEEccC-------CCCHHHHHHHHHHHhCC------CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc
Confidence 3333333432 37999999999999864 6788999997 5688999999999888888999888876
Q ss_pred CCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-CCC
Q 043870 252 ESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-AND 330 (526)
Q Consensus 252 ~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-~~d 330 (526)
+ +..||++.+|++|+|.+|.|||..+ .++++++|+|+|+++++. +++...+. ..+
T Consensus 138 ~--p~~yGvv~~d~~g~V~~i~EKp~~~---------------------~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge 193 (286)
T TIGR01207 138 D--PERYGVVEFDSNGRAISIEEKPAQP---------------------KSNYAVTGLYFYDNRVVE-IARQLKPSARGE 193 (286)
T ss_pred C--HHHCceEEECCCCeEEEEEECCCCC---------------------CCCEEEEEEEEEchHHHH-HHhhcCCCCCCc
Confidence 5 5679999999899999999999744 457899999999999874 66654342 233
Q ss_pred h-hhchHhhhhcCCcEEEEEe-cce-eeecCChhhHHHhchhhc
Q 043870 331 F-GSEVIPMATKDFNVQAYLF-NDY-WEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 331 ~-~~dil~~li~~~~V~~~~~-~~~-w~dIgt~~d~~~An~~ll 371 (526)
+ ..++++.++++.++.++.. .++ |.|+||+++|.+|+..+.
T Consensus 194 ~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 194 LEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred EeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 3 3689999998876665555 576 999999999999998763
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=282.44 Aligned_cols=234 Identities=20% Similarity=0.325 Sum_probs=190.3
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc--CC
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF--GD 171 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~--~~ 171 (526)
+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+....+.+.++ ..
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 999999999999999999999999999999998742211111110 00
Q ss_pred C------------eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHc
Q 043870 172 G------------FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINS 239 (526)
Q Consensus 172 ~------------~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~ 239 (526)
+ .+.+.. + ..+.||++++++++.++.+ ++|++++||++++.|+.++++.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~-------~~~~gt~~al~~~~~~i~~------e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVD--T-------GESTQTGGRLKRVREYLDD------EAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeeee--c-------CCcCCcHHHHHHHHHhcCC------CeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0 011111 1 1137999999999988853 78999999999999999999999999
Q ss_pred CCcEEEEEEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHH
Q 043870 240 GGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLK 319 (526)
Q Consensus 240 ~ad~ti~~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ 319 (526)
++++|+++.+ .+..||++.+|+ ++|+.|.|||... +.++++|+|+|++++| +
T Consensus 145 ~~d~tl~~~~----~~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il-~ 196 (254)
T TIGR02623 145 GKKATVTAVQ----PPGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVL-D 196 (254)
T ss_pred CCCEEEEEec----CCCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHH-h
Confidence 9999877652 245799999985 6999999998532 3578999999999998 4
Q ss_pred HHHhhCCCCCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCC
Q 043870 320 VLRWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKP 374 (526)
Q Consensus 320 ll~~~~~~~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~ 374 (526)
+++.. ..++..++++.++++.++.+|.++|||.||||+++|.+|+..+....
T Consensus 197 ~l~~~---~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 197 LIDGD---ATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred hcccc---CchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 66542 23566799999999889999999999999999999999999887654
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=284.64 Aligned_cols=240 Identities=21% Similarity=0.288 Sum_probs=186.6
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCC-----Cc
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGD-----GM 167 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~-----~~ 167 (526)
|+|||||||.||||+|||..+||||+|++|+ |||+|+|++|.++|+++|+|++++..+++.+|+.+.+.+.. +.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6899999999999999999999999999999 99999999999999999999999999999999975432210 00
Q ss_pred ccC-------CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeeccc---CHHHHHHHHH
Q 043870 168 NFG-------DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRM---DYMDFVQHHI 237 (526)
Q Consensus 168 ~~~-------~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~---dl~~ll~~h~ 237 (526)
.+. .....+....+ .++.||+++++.++.++.+ ++|+|++||+++.. ++.++++.|.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~G~~~al~~~~~~~~~------~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQ-------KEQKGLGHAVLCAEPFVGD------EPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEec-------CCCCCHHHHHHHHHHhhCC------CCEEEEeccceecCCcHHHHHHHHHHH
Confidence 000 00011111112 2347999999999988753 78999999997754 6999999999
Q ss_pred HcCCcEEEEEEEccCCcCCCceEEEEcC----CCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEc
Q 043870 238 NSGGDISVCCLPVDESRASDFGLMKIDE----TGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFK 313 (526)
Q Consensus 238 ~~~ad~ti~~~~~~~~~~~~~g~v~~d~----~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~ 313 (526)
++++++ +++..++.+++..||++..|. +++|..|.|||..... .++++++|+|+|+
T Consensus 147 ~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (260)
T TIGR01099 147 KYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (260)
T ss_pred HhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECC
Confidence 888886 556566555577899999862 3699999999953211 3568999999999
Q ss_pred HHHHHHHHHhhCCCC-CChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHh
Q 043870 314 TEVLLKVLRWHYPEA-NDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDA 366 (526)
Q Consensus 314 ~~~l~~ll~~~~~~~-~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~A 366 (526)
+++|..+.+...... ..+..++++.++++.+|++|.++|||.||||+++|++|
T Consensus 207 ~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 207 PDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 998875543321112 23346889999998999999999999999999999976
|
Built to distinquish between the highly similar genes galU and galF |
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=284.53 Aligned_cols=245 Identities=21% Similarity=0.335 Sum_probs=194.3
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcc-
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMN- 168 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~- 168 (526)
.+-|+|||||||.|+||+|+|..+||+|+||+|+ |+|+|+|++|.++|+++|+|++++..+++.+|+.+.++|+...+
T Consensus 6 ~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~ 84 (302)
T PRK13389 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEK 84 (302)
T ss_pred ccceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhh
Confidence 4458999999999999999999999999999999 99999999999999999999999999999999975443321000
Q ss_pred -----cCCC-------eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecc--------cC
Q 043870 169 -----FGDG-------FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYR--------MD 228 (526)
Q Consensus 169 -----~~~~-------~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~--------~d 228 (526)
+... ...+....|. ...||+++++++..++.+ ++|+|++||++++ .+
T Consensus 85 ~~~~~~~~e~~~i~~~~~~i~~~~q~-------~~~Gtg~Av~~a~~~~~~------~~~lVl~gD~~~~~~~~~~~~~d 151 (302)
T PRK13389 85 RVKRQLLDEVQSICPPHVTIMQVRQG-------LAKGLGHAVLCAHPVVGD------EPVAVILPDVILDEYESDLSQDN 151 (302)
T ss_pred hhhhHHHHhhhhccccCceEEEeecC-------CCCChHHHHHHHHHHcCC------CCEEEEeCcceeccccccccccc
Confidence 0000 0112222222 247999999999888753 7899999999874 68
Q ss_pred HHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEEcC-------CCCeeeeeccCCccccccccccccccccchhhhcCC
Q 043870 229 YMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDE-------TGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNF 301 (526)
Q Consensus 229 l~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d~-------~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~ 301 (526)
+.++++.|.+++++ ++++.++++ +..||++..|+ +++|..|.|||..... .
T Consensus 152 l~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~ 209 (302)
T PRK13389 152 LAEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------P 209 (302)
T ss_pred HHHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------C
Confidence 99999999888876 677777644 56899998863 3579999999974211 3
Q ss_pred CceeeeeEEEEcHHHHHHHHHhhCCC--CCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhc
Q 043870 302 PYIASMGIYLFKTEVLLKVLRWHYPE--ANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 302 ~~l~~~Giyif~~~~l~~ll~~~~~~--~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll 371 (526)
++++++|+|+|++++| ++++...+. ...+..++++.++++.++.+|.++|+|+|||||++|.+|+..+.
T Consensus 210 s~~~~~GiYi~~~~il-~~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 210 SNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred ccEEEEEEEEECHHHH-HHHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 5689999999999998 577654322 22345799999999899999999999999999999999999874
|
|
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=270.39 Aligned_cols=232 Identities=26% Similarity=0.413 Sum_probs=190.2
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|++++|.++|+++|+|++++..+.+.+|+.+.+.+ +..
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~~------~~~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSRF------GVR 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchhhc------CCe
Confidence 7899999999999999999999999999999 999999999999999999999999989999998753322 111
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccC
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDE 252 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~ 252 (526)
+.++. +. +..|++++++.++..+.+ +++++++||++++.++.++++.|.+.++++++++.+.++
T Consensus 74 -i~~~~--~~-------~~~g~~~sl~~a~~~i~~------~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (236)
T cd04189 74 -ITYIL--QE-------EPLGLAHAVLAARDFLGD------EPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED 137 (236)
T ss_pred -EEEEE--CC-------CCCChHHHHHHHHHhcCC------CCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC
Confidence 33332 21 237999999999988753 689999999999999999999999988999988887754
Q ss_pred CcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC--CCC
Q 043870 253 SRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE--AND 330 (526)
Q Consensus 253 ~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~--~~d 330 (526)
+..||++.+|+ ++|..+.|||..+ .+.++++|+|+|++++|.. ++...+. ...
T Consensus 138 --~~~~g~~~~d~-~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~~~~-l~~~~~~~~~~~ 192 (236)
T cd04189 138 --PRRFGVAVVDD-GRIVRLVEKPKEP---------------------PSNLALVGVYAFTPAIFDA-ISRLKPSWRGEL 192 (236)
T ss_pred --cccceEEEEcC-CeEEEEEECCCCC---------------------CCCEEEEEEEEeCHHHHHH-HHhcCCCCCCeE
Confidence 45789888874 5999999998643 2457899999999998864 4432222 122
Q ss_pred hhhchHhhhhcC-CcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 331 FGSEVIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 331 ~~~dil~~li~~-~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
...++++.++++ .+|++|.++++|.||||++||.+||..+++
T Consensus 193 ~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 193 EITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred EHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 246888888864 679999999999999999999999998875
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=271.47 Aligned_cols=219 Identities=21% Similarity=0.341 Sum_probs=181.3
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCe
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGF 173 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 173 (526)
+|||||||.|+||+|+|..+||||+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+.+ + +
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~-~------~--- 69 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDSR-F------G--- 69 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhccc-C------C---
Confidence 589999999999999999999999999999 9999999999999999999999999999999987511 2 1
Q ss_pred EEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHH--HcCCcEEEEEEEcc
Q 043870 174 VEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHI--NSGGDISVCCLPVD 251 (526)
Q Consensus 174 v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~--~~~ad~ti~~~~~~ 251 (526)
+.+....+. .+..|++++++.++.++++ ++|++++||++++.++.++++.|. ..++.+++...+.+
T Consensus 70 ~~i~~~~~~------~~~~g~~~~l~~~~~~~~~------~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (221)
T cd06422 70 LRITISDEP------DELLETGGGIKKALPLLGD------EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP 137 (221)
T ss_pred ceEEEecCC------CcccccHHHHHHHHHhcCC------CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC
Confidence 223322221 0237999999999988853 789999999999999999999998 45666666655544
Q ss_pred CCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCCh
Q 043870 252 ESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDF 331 (526)
Q Consensus 252 ~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d~ 331 (526)
....||.+.+|++|+|..+.|||.. +++++|+|+|++++|..+.+. ...
T Consensus 138 --~~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~ 186 (221)
T cd06422 138 --GHNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFS 186 (221)
T ss_pred --CCCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----ccc
Confidence 3567899999989999999988742 478999999999998755322 223
Q ss_pred hhchHhhhhcCCcEEEEEecceeeecCChhhHHHh
Q 043870 332 GSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDA 366 (526)
Q Consensus 332 ~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~A 366 (526)
..++++.++++.++.+|.++++|.||||+++|.+|
T Consensus 187 ~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 187 LNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 46899999998899999999999999999999876
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=271.94 Aligned_cols=243 Identities=19% Similarity=0.309 Sum_probs=190.8
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc--CCC
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF--GDG 172 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~--~~~ 172 (526)
|||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++|..+++.+|+.+.+..+....+ ..+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999999 999999999999999999999999999999999764321111110 111
Q ss_pred eEEEEecccccCc---CCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 173 FVEVLAATQRQGE---SGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 173 ~v~vl~~~~~~~~---~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
.+.++........ ..+....||+++++.++.++.+ .++|++++||++++.++.++++.|...++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~-----~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~ 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD-----DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC-----CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec
Confidence 1222221000000 0001126799999999988852 2689999999999999999999999999998887653
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCC
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAN 329 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~ 329 (526)
....||++.+|++|+|..+.|||... +..+++|+|+|++++|. .++.. ..
T Consensus 155 ----~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~-~l~~~---~~ 204 (253)
T cd02524 155 ----PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFD-YIDGD---DT 204 (253)
T ss_pred ----CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHH-hhccc---cc
Confidence 24579999999999999999998642 24789999999999985 44432 34
Q ss_pred ChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCC
Q 043870 330 DFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDK 373 (526)
Q Consensus 330 d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~ 373 (526)
++..++++.++++.++.+|.++|+|.||+|+++|.+|+..+...
T Consensus 205 ~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 205 VFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred hhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 56678999999988999999999999999999999999877553
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=264.56 Aligned_cols=223 Identities=24% Similarity=0.447 Sum_probs=185.6
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+.+ +.. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~~------~~~-~ 72 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYRG------GIR-I 72 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcccc------Cce-E
Confidence 69999999999999999999999999999 999999999999999999999999998888888754311 111 2
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccCCc
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESR 254 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~ 254 (526)
.+... +. ..|++++++.++..+.+ ++|++++||+++..++.++++.|.+.++++++++.+.++
T Consensus 73 ~~~~~-~~--------~~G~~~~l~~a~~~~~~------~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 135 (223)
T cd06915 73 YYVIE-PE--------PLGTGGAIKNALPKLPE------DQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD-- 135 (223)
T ss_pred EEEEC-CC--------CCcchHHHHHHHhhcCC------CCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--
Confidence 22221 11 27999999999888743 789999999999999999999998888888888877644
Q ss_pred CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCChhhc
Q 043870 255 ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSE 334 (526)
Q Consensus 255 ~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d~~~d 334 (526)
...|+.+.+|++|+|..|.|||... .++++++|+|+|++++|..+.+. ..++..+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~ 190 (223)
T cd06915 136 ASRYGNVTVDGDGRVIAFVEKGPGA---------------------APGLINGGVYLLRKEILAEIPAD----AFSLEAD 190 (223)
T ss_pred CCcceeEEECCCCeEEEEEeCCCCC---------------------CCCcEEEEEEEECHHHHhhCCcc----CCChHHH
Confidence 4578999999889999999987643 35688999999999998644221 2345678
Q ss_pred hHhhhhcCCcEEEEEecceeeecCChhhHHHhc
Q 043870 335 VIPMATKDFNVQAYLFNDYWEDIGTIKSFFDAN 367 (526)
Q Consensus 335 il~~li~~~~V~~~~~~~~w~dIgt~~d~~~An 367 (526)
+++.++++.++.+|.++++|.||||++||.+|+
T Consensus 191 ~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 191 VLPALVKRGRLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HHHHHHhcCcEEEEecCCeEEecCCHHHHHhhC
Confidence 999999877999999999999999999999984
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=259.34 Aligned_cols=217 Identities=30% Similarity=0.560 Sum_probs=182.3
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+.+.+|+.+.+.+ +. .+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~------~~-~i 72 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKF------GV-NI 72 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhhc------Cc-eE
Confidence 69999999999999999999999999999 999999999999999999999999988988998754211 11 13
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccCCc
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESR 254 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~ 254 (526)
.++. +. ...|++++++.++..+.+ ++|++++||++++.++.++++.|.++++++++++.+.+ +
T Consensus 73 ~~~~--~~-------~~~g~~~al~~~~~~~~~------~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 135 (217)
T cd04181 73 EYVV--QE-------EPLGTAGAVRNAEDFLGD------DDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--D 135 (217)
T ss_pred EEEe--CC-------CCCccHHHHHHhhhhcCC------CCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--C
Confidence 3332 22 126999999999888732 78999999999999999999999999999999888766 4
Q ss_pred CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCChhhc
Q 043870 255 ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSE 334 (526)
Q Consensus 255 ~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d~~~d 334 (526)
+..|+++.+|++|+|..+.|||... ..+.+++|+|+|++++| ++++.......++..+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~ 193 (217)
T cd04181 136 PSRYGVVELDDDGRVTRFVEKPTLP---------------------ESNLANAGIYIFEPEIL-DYIPEILPRGEDELTD 193 (217)
T ss_pred CCcceEEEEcCCCcEEEEEECCCCC---------------------CCCEEEEEEEEECHHHH-HhhhhcCCcccccHHH
Confidence 6689999999889999999998753 24689999999999988 4665533223466789
Q ss_pred hHhhhhcCCcEEEEEecceeeecC
Q 043870 335 VIPMATKDFNVQAYLFNDYWEDIG 358 (526)
Q Consensus 335 il~~li~~~~V~~~~~~~~w~dIg 358 (526)
+++.++++.++++|.++|+|.|||
T Consensus 194 ~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 194 AIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHHhcCCEEEEEcCCEEecCC
Confidence 999999999999999999999986
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-31 Score=255.40 Aligned_cols=219 Identities=26% Similarity=0.474 Sum_probs=176.9
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+|++|.++|+++|+|++++..+.+.+|+.+... |+.. +
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~~------~~~~-i 72 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGSK------FGVN-I 72 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCccc------cCcc-E
Confidence 69999999999999999999999999999 99999999999999999999999998888888874321 2211 3
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccCCc
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESR 254 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~ 254 (526)
.++. +. .+.|+++++..+.... .++|+|++||.+++.++.++++.|...++++++++.+.+.
T Consensus 73 ~~~~--~~-------~~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~-- 134 (220)
T cd06426 73 SYVR--ED-------KPLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV-- 134 (220)
T ss_pred EEEE--CC-------CCCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--
Confidence 2322 21 1368999997765443 3789999999999999999999999888888888876543
Q ss_pred CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCChhhc
Q 043870 255 ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSE 334 (526)
Q Consensus 255 ~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d~~~d 334 (526)
...||++..|+ ++|..|.|||.. +.++++|+|+|+++++..+ +. .......+
T Consensus 135 ~~~~g~~~~d~-~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~i-~~---~~~~~l~~ 186 (220)
T cd06426 135 QVPYGVVETEG-GRITSIEEKPTH-----------------------SFLVNAGIYVLEPEVLDLI-PK---NEFFDMPD 186 (220)
T ss_pred CCcceEEEECC-CEEEEEEECCCC-----------------------CCeEEEEEEEEcHHHHhhc-CC---CCCcCHHH
Confidence 35689999885 899999998763 3578999999999998643 22 11112467
Q ss_pred hHhhhhcC-CcEEEEEecceeeecCChhhHHHhc
Q 043870 335 VIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDAN 367 (526)
Q Consensus 335 il~~li~~-~~V~~~~~~~~w~dIgt~~d~~~An 367 (526)
+++.++++ .++++|.++++|.||||++||.+||
T Consensus 187 ~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 187 LIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 88888875 5799999999999999999999986
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=256.24 Aligned_cols=250 Identities=23% Similarity=0.329 Sum_probs=207.8
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
++-.+|||+|||.||||-|.|+..||-||||.++ |+|+|+++.+.++||++|++||+.++..+.+|+...|++.....-
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 3457999999999999999999999999999999 999999999999999999999999999999999887755321110
Q ss_pred C------------CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeeccc---CHHHHHH
Q 043870 170 G------------DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRM---DYMDFVQ 234 (526)
Q Consensus 170 ~------------~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~---dl~~ll~ 234 (526)
. ...+.+.+..|. .++|.++|+.+|..++.+ ++|.|+.+|.++.. .+.++++
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ~-------e~~GLGhAVl~A~~~vg~------EpFaVlL~Ddl~~~~~~~l~qmi~ 147 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQK-------EPLGLGHAVLCAKPFVGD------EPFAVLLPDDLVDSEKPCLKQMIE 147 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEecC-------CCCcchhHHHhhhhhcCC------CceEEEeCCeeecCCchHHHHHHH
Confidence 0 112344444444 368999999999999986 89999999998865 3889999
Q ss_pred HHHHcCCcEEEEEEEccCCcCCCceEEE----EcCC-CCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeE
Q 043870 235 HHINSGGDISVCCLPVDESRASDFGLMK----IDET-GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGI 309 (526)
Q Consensus 235 ~h~~~~ad~ti~~~~~~~~~~~~~g~v~----~d~~-g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Gi 309 (526)
.+.+.+.. ++.+.+++.++.++||++. .+++ .+|..+.|||...+. .|+++..|-
T Consensus 148 ~ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GR 207 (291)
T COG1210 148 LYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGR 207 (291)
T ss_pred HHHHhCCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------Ccceeeeee
Confidence 99888774 5778888877889999998 3333 589999999986543 689999999
Q ss_pred EEEcHHHHHHHHHhhCCCC-CC-hhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCC
Q 043870 310 YLFKTEVLLKVLRWHYPEA-ND-FGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKP 374 (526)
Q Consensus 310 yif~~~~l~~ll~~~~~~~-~d-~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~ 374 (526)
|+|++++|. +|++..+.. ++ ...|.|..+++.+.|++|.++|..+|+|+...|.+|+..+..+.
T Consensus 208 Yil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 208 YVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred eecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 999999996 777754442 23 35889999999999999999999999999999999999887654
|
|
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=244.67 Aligned_cols=207 Identities=14% Similarity=0.230 Sum_probs=158.7
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
++|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.++... ...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~--~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKS--SLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcccccccc--Ccc
Confidence 4899999999999999999999999999999 9999999999999999999999999999999998654332211 001
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHH-----cCCcEEEEE
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHIN-----SGGDISVCC 247 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~-----~~ad~ti~~ 247 (526)
.+.+... . ...|++++++..... . ...++|++++||++++.++.++++.|++ +++++|+++
T Consensus 78 ~i~~~~~--~-------~~~~~~~al~~~~~~-~----~~~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~ 143 (217)
T cd04197 78 IVIIIMS--E-------DCRSLGDALRDLDAK-G----LIRGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVL 143 (217)
T ss_pred eEEEEeC--C-------CcCccchHHHHHhhc-c----ccCCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEE
Confidence 1333322 1 135788888654321 0 1127899999999999999999999987 478899988
Q ss_pred EEccCCcC----CCceEEEEcCC-CCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHH
Q 043870 248 LPVDESRA----SDFGLMKIDET-GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVL 317 (526)
Q Consensus 248 ~~~~~~~~----~~~g~v~~d~~-g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l 317 (526)
.++++++. .+++++.+|++ ++|..|.|||..+.....+++.+++...+.. ..++++.++|+|+|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~-~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 144 KEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEV-EIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcE-EEECCceecCEEEeCCCCC
Confidence 88766442 24678888866 8999999999876544444555555433332 3478999999999999864
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=241.49 Aligned_cols=222 Identities=18% Similarity=0.254 Sum_probs=171.1
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+.+.+|+.+.. + +
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~--------~---~ 68 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKYP--------N---I 68 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhccC--------C---e
Confidence 69999999999999999999999999999 9999999999999999999999999999888876321 1 4
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccCCc
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESR 254 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~ 254 (526)
.++...+.. ..|++++++.++.++. ++|++++||++++. ++++.|.+.++++++++.+.....
T Consensus 69 ~~~~~~~~~-------~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02523 69 KFVYNPDYA-------ETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEW 131 (229)
T ss_pred EEEeCcchh-------hhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccc
Confidence 444332211 2799999999988873 78999999999866 566777778888898887644333
Q ss_pred CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHh---hCC--CCC
Q 043870 255 ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW---HYP--EAN 329 (526)
Q Consensus 255 ~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~---~~~--~~~ 329 (526)
...++....| ++++..+.+||..+. ....+++|+|+|+++++..+.+. ..+ ...
T Consensus 132 ~~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~ 190 (229)
T cd02523 132 EDEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVN 190 (229)
T ss_pred cccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhccccc
Confidence 3445544333 378999999886542 24578999999999987655332 111 234
Q ss_pred ChhhchHhhhhc--CCcEEEEEecceeeecCChhhHHHhc
Q 043870 330 DFGSEVIPMATK--DFNVQAYLFNDYWEDIGTIKSFFDAN 367 (526)
Q Consensus 330 d~~~dil~~li~--~~~V~~~~~~~~w~dIgt~~d~~~An 367 (526)
++.+++++.+++ +..++.+.. ++|.||||++||.+|+
T Consensus 191 ~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 191 LYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred ccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 556789999988 344555555 8999999999999885
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=234.74 Aligned_cols=199 Identities=48% Similarity=0.843 Sum_probs=161.5
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
|||||||.||||+|+|...||+|+||+|+||||+|+++++.++|+++|+|++++..+++.+|+.+...|+.. .....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~--~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDLD--RKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccCC--CCCCCE
Confidence 699999999999999999999999999987899999999999999999999999999999999754433211 111224
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccCCc
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESR 254 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~ 254 (526)
.++...+. ..+++..||+++++.+...+++ ...++|++++||++++.++.++++.|.++++++|+++.
T Consensus 79 ~~~~~~~~---~~~~~~~Gta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQR---KGGDWYRGTADAIYQNLDYIER---SDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccC---CCCCcccCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 45543221 0234678999999999998853 22478999999999999999999999998888887653
Q ss_pred CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-CCChhh
Q 043870 255 ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-ANDFGS 333 (526)
Q Consensus 255 ~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-~~d~~~ 333 (526)
+++|+|+|++++|..+++...+. ..++..
T Consensus 147 --------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 --------------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred --------------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 26799999999997777654222 345678
Q ss_pred chHhhhhcCCcEEEEEecceeeec
Q 043870 334 EVIPMATKDFNVQAYLFNDYWEDI 357 (526)
Q Consensus 334 dil~~li~~~~V~~~~~~~~w~dI 357 (526)
|+++.++++.++++|.++|+|.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 999999999999999999999996
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=238.16 Aligned_cols=222 Identities=19% Similarity=0.246 Sum_probs=167.9
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
.||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++++|++++.. ....++.+.+... . . .+
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~~-~---~--~~ 72 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKLL-A---P--NA 72 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHHh-C---C--CC
Confidence 48999999999999999999999999999 99999999999999999999987432 2123332221100 0 0 12
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccCCc
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESR 254 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~ 254 (526)
.+...... ..||+++++.++..+. ..++|++++||++++.++.++++.|.+.+.+.++++... .
T Consensus 73 ~i~~~~~~--------~~g~~~~l~~a~~~l~-----~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~ 136 (231)
T cd04183 73 TVVELDGE--------TLGAACTVLLAADLID-----NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---S 136 (231)
T ss_pred EEEEeCCC--------CCcHHHHHHHHHhhcC-----CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC---C
Confidence 22222111 2799999999998874 127899999999999999999998888777777766654 2
Q ss_pred CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHH-HHHHHHHhhC----CCCC
Q 043870 255 ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTE-VLLKVLRWHY----PEAN 329 (526)
Q Consensus 255 ~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~-~l~~ll~~~~----~~~~ 329 (526)
...|+++.+|++|+|..+.||+. .+.++++|+|+|+++ .|.++++... ....
T Consensus 137 ~~~~~~v~~d~~~~v~~~~ek~~-----------------------~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~ 193 (231)
T cd04183 137 HPRWSYVKLDENGRVIETAEKEP-----------------------ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNG 193 (231)
T ss_pred CCCeEEEEECCCCCEEEeEEcCC-----------------------CCCccEeEEEEECcHHHHHHHHHHHHhhcccccC
Confidence 34799999999999999998853 234689999999997 6655665421 1122
Q ss_pred -ChhhchHhhhhcC-CcEEEEEe-cceeeecCChhhH
Q 043870 330 -DFGSEVIPMATKD-FNVQAYLF-NDYWEDIGTIKSF 363 (526)
Q Consensus 330 -d~~~dil~~li~~-~~V~~~~~-~~~w~dIgt~~d~ 363 (526)
.+..++++.++++ .+|.+|.+ .++|.||||++||
T Consensus 194 ~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 194 EFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred cEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 2347899998865 57999999 6899999999987
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=232.14 Aligned_cols=235 Identities=22% Similarity=0.352 Sum_probs=169.5
Q ss_pred eEEEEEcCCCCccccCccC-CCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccChhH-HHHHhhhcccCCCCccc
Q 043870 93 VASIILGGGAGTRLFPLTG-RRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNSQS-LNRHISRTYNLGDGMNF 169 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~-~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~-l~~~l~~~~~~~~~~~~ 169 (526)
|++||||||.||||+|||. .+||+|+|++|.+|||+++++++.+. ++++|+|++++.... +.+++.+ . .
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~--~----- 72 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-G--L----- 72 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-c--C-----
Confidence 6899999999999999996 79999999999339999999999998 599999999975543 4455543 1 0
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecc--cCHHHHHHHHHH---cCCcEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYR--MDYMDFVQHHIN---SGGDIS 244 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~--~dl~~ll~~h~~---~~ad~t 244 (526)
..+.++.... ..||++++..+..++.. ....+.++|++||+++. .++.++++.|.+ .++.+|
T Consensus 73 --~~~~ii~ep~---------~~gTa~ai~~a~~~~~~--~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt 139 (274)
T cd02509 73 --PEENIILEPE---------GRNTAPAIALAALYLAK--RDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVT 139 (274)
T ss_pred --CCceEEECCC---------CCCcHHHHHHHHHHHHh--cCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEE
Confidence 0133443222 26999999999988852 01346899999999876 457777765543 567788
Q ss_pred EEEEEccCCcCCCceEEEEcCCC-----CeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHH
Q 043870 245 VCCLPVDESRASDFGLMKIDETG-----RIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLK 319 (526)
Q Consensus 245 i~~~~~~~~~~~~~g~v~~d~~g-----~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ 319 (526)
+.+.+.++ .+.||++..+++. +|.+|.|||.....+.+ .....+++|+|+|+|+++.|.+
T Consensus 140 ~gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------~~~g~~~wNsGiyi~~~~~l~~ 204 (274)
T cd02509 140 FGIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEY-------------LESGNYLWNSGIFLFRAKTFLE 204 (274)
T ss_pred EEeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHH-------------hhcCCeEEECceeeeeHHHHHH
Confidence 88877643 4689999998653 89999999986532111 1113579999999999998888
Q ss_pred HHHhhCCCCC-------------C---hhhchHhh--------h-h-cCCcEEEEEecceeeecCChhhH
Q 043870 320 VLRWHYPEAN-------------D---FGSEVIPM--------A-T-KDFNVQAYLFNDYWEDIGTIKSF 363 (526)
Q Consensus 320 ll~~~~~~~~-------------d---~~~dil~~--------l-i-~~~~V~~~~~~~~w~dIgt~~d~ 363 (526)
.++...|+-. + +..+.++. + + +..++.+++.+..|.|+|+.+++
T Consensus 205 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~~ 274 (274)
T cd02509 205 ELKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDAL 274 (274)
T ss_pred HHHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCcccC
Confidence 8876655311 0 11222322 1 1 24578889999999999998753
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=216.05 Aligned_cols=221 Identities=21% Similarity=0.357 Sum_probs=172.0
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
|||||||.|+||++ .+||+|+|++|+ |||+|+|+++.++|+++++|++++..+.+.+++.+ + + +
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~-~--------~---~ 64 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN-P--------N---V 64 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC-C--------C---c
Confidence 69999999999995 689999999999 99999999999999999999999988888777753 1 1 3
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-e-cccCHHHHHHHHHHcCCcEEEEEEEccC
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-L-YRMDYMDFVQHHINSGGDISVCCLPVDE 252 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l-~~~dl~~ll~~h~~~~ad~ti~~~~~~~ 252 (526)
.++.... ..|+++++++++..++. ..++|++++||+ + ...++.++++.|.+.++++++.+.+.++
T Consensus 65 ~~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02540 65 EFVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED 131 (229)
T ss_pred EEEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC
Confidence 3333211 26899999999988852 247899999999 3 3556999999998877888887776654
Q ss_pred CcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC---CC
Q 043870 253 SRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE---AN 329 (526)
Q Consensus 253 ~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~---~~ 329 (526)
+..|+.+..|++|+|..+.||+..... + ...+.+++|+|+|+++.|.++++..... ..
T Consensus 132 --p~~~~~~~~~~~~~v~~~~ek~~~~~~---------------~--~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~ 192 (229)
T cd02540 132 --PTGYGRIIRDGNGKVLRIVEEKDATEE---------------E--KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGE 192 (229)
T ss_pred --CCCccEEEEcCCCCEEEEEECCCCChH---------------H--HhhceEEeEEEEEEHHHHHHHHHHcccccCCCc
Confidence 567898888888999999998753210 0 0236789999999998887777764322 23
Q ss_pred ChhhchHhhhhcC-CcEEEEEecce--eeecCChhhH
Q 043870 330 DFGSEVIPMATKD-FNVQAYLFNDY--WEDIGTIKSF 363 (526)
Q Consensus 330 d~~~dil~~li~~-~~V~~~~~~~~--w~dIgt~~d~ 363 (526)
.+..++++.+++. .+|++|.++|| |+.|+|+.++
T Consensus 193 ~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 193 YYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 4467889998874 67999999865 6778888763
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=217.79 Aligned_cols=204 Identities=17% Similarity=0.265 Sum_probs=158.3
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
++|||||||.|+||.|+|...||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+|+.+.+.+.. ... .
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~--~~~-~ 76 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSL--SSK-M 76 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccc--cCC-c
Confidence 5899999999999999999999999999999 99999999999999999999999999999999986542100 001 1
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHH--HHHcCCcEEEEEEEc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQH--HINSGGDISVCCLPV 250 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~--h~~~~ad~ti~~~~~ 250 (526)
.+.+....+. ...|++++++.+.+.+. ++|++++||++++.++.++++. +...++++++.+...
T Consensus 77 ~v~~~~~~~~-------~~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~ 142 (216)
T cd02507 77 IVDVITSDLC-------ESAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLA 142 (216)
T ss_pred eEEEEEccCC-------CCCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEec
Confidence 1333333222 24799999999988774 7899999999999999999975 555667777766654
Q ss_pred cCCc-------CCCceEEEEcCC---CCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHH
Q 043870 251 DESR-------ASDFGLMKIDET---GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVL 317 (526)
Q Consensus 251 ~~~~-------~~~~g~v~~d~~---g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l 317 (526)
+... +.+++++.+|++ .++.++.+++... ..+.+..+++.-.++. ..++++.++|+|+|++++|
T Consensus 143 ~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~l~~~~~~-~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 143 SPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDED--LELIIRKSLLSKHPNV-TIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred cCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcC--cccccCHHHHhcCCCE-EEEcCcccccEEEecCcCC
Confidence 4322 567899999987 6888898888754 2333456666655543 3478999999999998764
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-24 Score=227.09 Aligned_cols=240 Identities=17% Similarity=0.314 Sum_probs=166.4
Q ss_pred eEEEEEcCCCCccccCccCC-CCccceeeCC-cchhHHHHHHHHHhcCCcEEEEEeccChh-HHHHHhhhcccCCCCccc
Q 043870 93 VASIILGGGAGTRLFPLTGR-RAKPAVPIGG-CYRLIDVPMSNCINSGIKKIYILTQFNSQ-SLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~-~pK~LlpV~g-~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~-~l~~~l~~~~~~~~~~~~ 169 (526)
|.+||||||.||||+|||.. +||+|+|+.| + |||++++++|...++++++|+++.... .+.+++. .+++
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~-~~~~------ 72 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLR-EIGK------ 72 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHH-HcCC------
Confidence 57999999999999999986 8999999977 6 999999999999999999999986543 2334443 2211
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeeccc--CHHHHHHHH---HHcCCcEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRM--DYMDFVQHH---INSGGDIS 244 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~--dl~~ll~~h---~~~~ad~t 244 (526)
....++.... ..||++++..+..++... ....+.++|++||+++.. +|.++++.+ .+.++.+|
T Consensus 73 --~~~~~i~Ep~---------~~gTa~ai~~aa~~~~~~-~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvt 140 (468)
T TIGR01479 73 --LASNIILEPV---------GRNTAPAIALAALLAARR-NGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVT 140 (468)
T ss_pred --CcceEEeccc---------ccCchHHHHHHHHHHHHH-HCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEE
Confidence 0012332221 268999998877666320 012345999999986643 488887765 34455566
Q ss_pred EEEEEccCCcCCCceEEEEcC------CCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHH
Q 043870 245 VCCLPVDESRASDFGLMKIDE------TGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLL 318 (526)
Q Consensus 245 i~~~~~~~~~~~~~g~v~~d~------~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~ 318 (526)
+...+.. ..+.||++..++ .++|.+|.|||.....+.+ .....++||+|+|+|+++.|.
T Consensus 141 lgi~p~~--p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------l~~g~~~wNsGif~~~~~~ll 205 (468)
T TIGR01479 141 FGIVPTH--PETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAY-------------LESGDYYWNSGMFLFRASRYL 205 (468)
T ss_pred EEecCCC--CCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHH-------------HhcCCeEEEeeEEEEEHHHHH
Confidence 6665543 356899999873 2689999999986432111 111357999999999988877
Q ss_pred HHHHhhCCCC-----------------CChhhchHh---------hhhc-CCcEEEEEecceeeecCChhhHHHhc
Q 043870 319 KVLRWHYPEA-----------------NDFGSEVIP---------MATK-DFNVQAYLFNDYWEDIGTIKSFFDAN 367 (526)
Q Consensus 319 ~ll~~~~~~~-----------------~d~~~dil~---------~li~-~~~V~~~~~~~~w~dIgt~~d~~~An 367 (526)
+.++...|+- ..+..++++ .+++ ..++.+.+.+..|.|+|+++++.++-
T Consensus 206 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 206 AELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 7776654421 011123444 2222 45789999999999999999999864
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-24 Score=206.92 Aligned_cols=201 Identities=21% Similarity=0.300 Sum_probs=150.2
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChh-HHHHHhhhcccCCCCcccCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQ-SLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~-~l~~~l~~~~~~~~~~~~~~ 171 (526)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++|+|++++... .+.+++.+.. +.... .
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~-~~~~~---~ 75 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFP-LNLKQ---K 75 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcc-cccCc---c
Confidence 6899999999999999999999999999999 999999999999999999999997654 5666665321 11110 1
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEcc
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVD 251 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~ 251 (526)
..+.+.. + ....||+++++.+...+. ++|+|++||.+++.++.++++.|+..++.+|+++.+..
T Consensus 76 ~~~~~~~--~-------~~~~gt~~al~~~~~~i~-------~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~ 139 (214)
T cd04198 76 LDEVTIV--L-------DEDMGTADSLRHIRKKIK-------KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPP 139 (214)
T ss_pred eeEEEec--C-------CCCcChHHHHHHHHhhcC-------CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccC
Confidence 1122221 1 123799999999987763 67999999999999999999999999999999887754
Q ss_pred CCc-----------CCCceEEEEcC-CCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHH
Q 043870 252 ESR-----------ASDFGLMKIDE-TGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVL 317 (526)
Q Consensus 252 ~~~-----------~~~~g~v~~d~-~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l 317 (526)
... +..+.++.+|+ ++++..+.+.... .+...++.++|.-.|+. ..++++.++++|+|++++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~--~~~~~~~~~~l~~~~~~-~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 140 VSSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDL--DEDLELRKSLLKRHPRV-TITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CcccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHh--hhhhhHHHHHHHhCCCE-EEEcCcccceEEEEEeeeC
Confidence 311 23466777775 4788877764322 22344566666654433 3478999999999998764
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-23 Score=202.80 Aligned_cols=234 Identities=17% Similarity=0.217 Sum_probs=161.5
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
++.+||||+|.|+||. +|+|+|++|+ |||+|+++.|.++++++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~-~--------~- 62 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVEA-F--------G- 62 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH-c--------C-
Confidence 5789999999999995 6999999999 999999999999999999998864 556666642 2 1
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
+.++...+. ++.|+.+... +...++. ...+.+++++||+ +++. .+.++++.|..+++++++++.+
T Consensus 63 --~~v~~~~~~-------~~~gt~~~~~-~~~~~~~---~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~ 129 (245)
T PRK05450 63 --GEVVMTSPD-------HPSGTDRIAE-AAAKLGL---ADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVP 129 (245)
T ss_pred --CEEEECCCc-------CCCchHHHHH-HHHhcCC---CCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeee
Confidence 233332222 2346655443 3333321 1236699999999 6655 4889999887776777777766
Q ss_pred ccC----CcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhC
Q 043870 250 VDE----SRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHY 325 (526)
Q Consensus 250 ~~~----~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~ 325 (526)
..+ ..+..++++ +|++|+|++|.|||..+...+ ++. .+..++++++|+|+|+++++..+.+. .
T Consensus 130 ~~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~----------~~~-~~~~~~~~~~Giy~~~~~~l~~~~~~-~ 196 (245)
T PRK05450 130 IHDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDA----------FAD-SAPTPVYRHIGIYAYRRGFLRRFVSL-P 196 (245)
T ss_pred cCCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCc----------ccc-ccCccccEEEEEEecCHHHHHHHHhC-C
Confidence 532 334557765 888999999999985431100 000 01135899999999999999766543 2
Q ss_pred CCCCChh--hchHhhhhcCCcEEEEEecc-eeeecCChhhHHHhchhh
Q 043870 326 PEANDFG--SEVIPMATKDFNVQAYLFND-YWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 326 ~~~~d~~--~dil~~li~~~~V~~~~~~~-~w~dIgt~~d~~~An~~l 370 (526)
+...+.. .++++.+-++.+|+++..++ +|.|||||+||.+|+..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 197 PSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 2211111 12234344577899999996 999999999999999754
|
|
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-23 Score=196.68 Aligned_cols=227 Identities=17% Similarity=0.260 Sum_probs=150.8
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEe-ccChhHHHHHhhhcccCCCCcc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILT-QFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~-~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
++.|+|||||||.|+||+| +.||+|+.|+|+ ++|+|+|++|++.|+++++||+ +|..+.+.+++. .|++.
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~-~~~~~---- 71 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLK-KYPFN---- 71 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHh-cCCcc----
Confidence 3568999999999999998 899999999999 9999999999999999999999 888887777776 33221
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~ 248 (526)
..++...... -.+|+.||..+++.++ +.|++++||++|...+.+.+ .+.... ++.+.
T Consensus 72 -----~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~~e~l---~~a~~~-~li~d 128 (239)
T COG1213 72 -----AKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSILERL---LEAPGE-GLIVD 128 (239)
T ss_pred -----eEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHHHHHHH---HhCcCC-cEEEe
Confidence 3333322221 1356999999998887 56999999999998854333 222222 22232
Q ss_pred EccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCC
Q 043870 249 PVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA 328 (526)
Q Consensus 249 ~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~ 328 (526)
..+.....+-.-...+++|++..+.++-+. .+..++|++.|+++++....+.. .+.
T Consensus 129 ~~~~~~~~~ea~kv~~e~G~i~~igK~l~e-----------------------~~~e~iGi~~l~~~i~~~~~~~~-~e~ 184 (239)
T COG1213 129 RRPRYVGVEEATKVKDEGGRIVEIGKDLTE-----------------------YDGEDIGIFILSDSIFEDTYELL-VER 184 (239)
T ss_pred ccccccccCceeEEEecCCEEehhcCCccc-----------------------ccceeeeeEEechHHHHHHHHHH-hhh
Confidence 221111111112234578999999877653 24689999999999876544332 111
Q ss_pred CCh-hhchHhhh-hcCCcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 329 NDF-GSEVIPMA-TKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 329 ~d~-~~dil~~l-i~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
..+ ..++.+.. +.-..+-......+|+||+||+|+.+|...+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 185 SEYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred hhHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence 111 12222222 111111111113579999999999999987754
|
|
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-22 Score=194.80 Aligned_cols=225 Identities=18% Similarity=0.289 Sum_probs=156.9
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
+.+||||+|.|+||. ||+|+|++|+ |||+|+++++.++ |+++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~-~--------~- 62 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES-F--------G- 62 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH-c--------C-
Confidence 679999999999996 7999999999 9999999999998 99999999875 556666642 2 1
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ec-ccCHHHHHHHHHHc-CCcEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LY-RMDYMDFVQHHINS-GGDISVCCL 248 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~-~~dl~~ll~~h~~~-~ad~ti~~~ 248 (526)
+.++...+. +..|+++ +..+...+. ...+.|++++||+ ++ ..++..+++.|... ++++++++.
T Consensus 63 --~~~~~~~~~-------~~~gt~~-~~~~~~~~~----~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~ 128 (239)
T cd02517 63 --GKVVMTSPD-------HPSGTDR-IAEVAEKLD----ADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLAT 128 (239)
T ss_pred --CEEEEcCcc-------cCchhHH-HHHHHHhcC----CCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 333322221 1257764 555555553 1236799999998 55 44689999988766 678888887
Q ss_pred EccCCc----CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhh
Q 043870 249 PVDESR----ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWH 324 (526)
Q Consensus 249 ~~~~~~----~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~ 324 (526)
+.++.. ...|+ +..|++|+|..|.+||.....++ . +..++++++|+|+|++++|..+.+..
T Consensus 129 ~~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~~------------~--~~~~~~~~~Giy~~~~~~~~~~~~~~ 193 (239)
T cd02517 129 PISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRDS------------S--EDFPYYKHIGIYAYRRDFLLRFAALP 193 (239)
T ss_pred EcCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCCC------------C--CCCceeEEEEEEEECHHHHHHHHhCC
Confidence 765422 22333 55677899999998764321000 0 00246899999999999997665421
Q ss_pred CCCCCChh-hchHh--hhhc-CCcEEEEEecceeeecCChhhHHHhch
Q 043870 325 YPEANDFG-SEVIP--MATK-DFNVQAYLFNDYWEDIGTIKSFFDANL 368 (526)
Q Consensus 325 ~~~~~d~~-~dil~--~li~-~~~V~~~~~~~~w~dIgt~~d~~~An~ 368 (526)
+ ..+. .+.++ .+++ +.++.++..+++|.||||++||.+|+.
T Consensus 194 -~--~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 194 -P--SPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred -C--chhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 1 1221 22332 3344 566999999999999999999999985
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-21 Score=188.41 Aligned_cols=225 Identities=17% Similarity=0.276 Sum_probs=153.3
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
++.|||||+|.|+||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~-~~-------- 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA-FG-------- 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH-cC--------
Confidence 4789999999999996 5999999999 9999999999998 89999999875 556666652 21
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCC-cEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGG-DISVCC 247 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~a-d~ti~~ 247 (526)
+.++...+. +..|++ .+..+...++ .+.|+++.||+ +...++.++++.|.+.+. ++++++
T Consensus 64 ---~~v~~~~~~-------~~~g~~-~~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~ 126 (238)
T PRK13368 64 ---GKVVMTSDD-------HLSGTD-RLAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLC 126 (238)
T ss_pred ---CeEEecCcc-------CCCccH-HHHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEE
Confidence 222222111 124565 4555554443 37899999997 445669999998876543 555566
Q ss_pred EEccCC-c---CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHh
Q 043870 248 LPVDES-R---ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 248 ~~~~~~-~---~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
.+.+.. + +..+++ ..+++|++..|.|+|..... ++. ...++.++|+|+|++++|..+ +.
T Consensus 127 ~~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~--------------~~~-~~~~~~n~giy~~~~~~l~~~-~~ 189 (238)
T PRK13368 127 APISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRR--------------DGE-SARYLKHVGIYAFRRDVLQQF-SQ 189 (238)
T ss_pred EEcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCC--------------CCC-CCceeEEEEEEEeCHHHHHHH-Hc
Confidence 555431 1 334444 44667999999976532100 000 024589999999999999753 33
Q ss_pred hCCCCC-Chhh-chHhhhh-cCCcEEEEEecceeeecCChhhHHHhchh
Q 043870 324 HYPEAN-DFGS-EVIPMAT-KDFNVQAYLFNDYWEDIGTIKSFFDANLS 369 (526)
Q Consensus 324 ~~~~~~-d~~~-dil~~li-~~~~V~~~~~~~~w~dIgt~~d~~~An~~ 369 (526)
..+... ++.. +++ .++ .+.+++++..+++|.||||++||..|+..
T Consensus 190 ~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 190 LPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 111111 1222 555 444 56679999988999999999999999864
|
|
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-21 Score=177.67 Aligned_cols=219 Identities=15% Similarity=0.206 Sum_probs=153.7
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|+|||||||.||||.|||...||+|+.|.|+ |||+++|+.|.++||++|+||+||.+++ .+||.++|+..
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~-FeYLkdKy~vt-------- 70 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQ-FEYLKDKYDVT-------- 70 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHH-HHHHHHhcCeE--------
Confidence 6899999999999999999999999999999 9999999999999999999999999988 68999988421
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccC
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDE 252 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~ 252 (526)
+.....+.. -++..+++.|++.+++ ..|+.+|.+...++- ..+ ...+-. .++....
T Consensus 71 -LvyN~kY~~---------yNn~ySlyla~d~l~n--------tYiidsDnyl~kNif---~~~-~~~S~Y-fav~~~~- 126 (231)
T COG4750 71 -LVYNPKYRE---------YNNIYSLYLARDFLNN--------TYIIDSDNYLTKNIF---LTK-ESHSKY-FAVYRSG- 126 (231)
T ss_pred -EEeCchHHh---------hhhHHHHHHHHHHhcc--------cEEeccchHhhhhhh---hcC-cccceE-EEEEecC-
Confidence 223333333 4688999999999975 899999998877741 111 111211 1122211
Q ss_pred CcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHH---HHHHHHhhCCC--
Q 043870 253 SRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEV---LLKVLRWHYPE-- 327 (526)
Q Consensus 253 ~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~---l~~ll~~~~~~-- 327 (526)
..+--++..+.+|+|+.+.---. .....+|+-.|++.. +..+++..+-.
T Consensus 127 --~tnEw~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e 180 (231)
T COG4750 127 --KTNEWLLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLE 180 (231)
T ss_pred --CCceeEEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCch
Confidence 22333566788899988764322 346788999999763 33455554321
Q ss_pred -CCChhhchHhhhhcCCcEEEEEec-ceeeecCChhhHHHhchhhc
Q 043870 328 -ANDFGSEVIPMATKDFNVQAYLFN-DYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 328 -~~d~~~dil~~li~~~~V~~~~~~-~~w~dIgt~~d~~~An~~ll 371 (526)
..-+.+++.-.-++...+++-..+ +--+++++.++|......++
T Consensus 181 ~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l 226 (231)
T COG4750 181 NRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFL 226 (231)
T ss_pred hhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhc
Confidence 112345555555665555554443 45778999999988766543
|
|
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=198.13 Aligned_cols=244 Identities=17% Similarity=0.306 Sum_probs=164.4
Q ss_pred CCceEEEEEcCCCCccccCccCC-CCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChh-HHHHHhhhcccCCCCc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGR-RAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQ-SLNRHISRTYNLGDGM 167 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~-~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~-~l~~~l~~~~~~~~~~ 167 (526)
.++|.+||||||.||||+|+|.. .||+|+|+.|..|||+++++++...++.+.+||++.... .+.+++.. . ..
T Consensus 3 ~~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~-~--~~-- 77 (478)
T PRK15460 3 QSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQ-L--NK-- 77 (478)
T ss_pred CCceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHh-c--CC--
Confidence 44589999999999999999997 699999996634999999999999888888888886554 33344432 1 10
Q ss_pred ccCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCC-CCeEEEEcCCeecccC--HHHHHHHHH---HcCC
Q 043870 168 NFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRN-IENILILSGDHLYRMD--YMDFVQHHI---NSGG 241 (526)
Q Consensus 168 ~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~-~e~~lil~gD~l~~~d--l~~ll~~h~---~~~a 241 (526)
.. ..++.... ..+|+.++..+..++.. +... ..-++++++|+++... |.+.++... +.+.
T Consensus 78 --~~--~~ii~EP~---------~rnTApaialaa~~~~~-~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~ 143 (478)
T PRK15460 78 --LT--ENIILEPA---------GRNTAPAIALAALAAKR-HSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGK 143 (478)
T ss_pred --cc--ccEEecCC---------CCChHHHHHHHHHHHHH-hcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCC
Confidence 00 12232211 15799998877766643 0011 3568899999976553 555554432 2355
Q ss_pred cEEEEEEEccCCcCCCceEEEEcCC---------CCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEE
Q 043870 242 DISVCCLPVDESRASDFGLMKIDET---------GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLF 312 (526)
Q Consensus 242 d~ti~~~~~~~~~~~~~g~v~~d~~---------g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif 312 (526)
-+|+...|... .+.||++..++. .+|.+|.|||+....+.+ ...-.|+||+|+|+|
T Consensus 144 lvt~GI~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~y-------------l~~G~y~WNsGiF~~ 208 (478)
T PRK15460 144 LVTFGIVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAY-------------VASGEYYWNSGMFLF 208 (478)
T ss_pred EEEEecCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHH-------------HHcCCEEEecceehe
Confidence 56666655433 568999997642 269999999997654333 122458999999999
Q ss_pred cHHHHHHHHHhhCCCC--------------CCh--h-hchHh--------hhhc--CCcEEEEEecceeeecCChhhHHH
Q 043870 313 KTEVLLKVLRWHYPEA--------------NDF--G-SEVIP--------MATK--DFNVQAYLFNDYWEDIGTIKSFFD 365 (526)
Q Consensus 313 ~~~~l~~ll~~~~~~~--------------~d~--~-~dil~--------~li~--~~~V~~~~~~~~w~dIgt~~d~~~ 365 (526)
+.+.+...++.+.|+- .++ . .+.++ +++- ..++.+.+.+..|.|+|+..++.+
T Consensus 209 ~a~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~ 288 (478)
T PRK15460 209 RAGRYLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWE 288 (478)
T ss_pred eHHHHHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHH
Confidence 9998877777655421 010 0 11222 2221 346888888888999999999988
Q ss_pred hc
Q 043870 366 AN 367 (526)
Q Consensus 366 An 367 (526)
.-
T Consensus 289 ~~ 290 (478)
T PRK15460 289 IS 290 (478)
T ss_pred hh
Confidence 63
|
|
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-19 Score=174.85 Aligned_cols=245 Identities=20% Similarity=0.348 Sum_probs=166.8
Q ss_pred ceEEEEEcCCCCccccCccC-CCCccceeeCCcchhHHHHHHHHHh-cCCcEEEEEeccChh-HHHHHhhhcccCCCCcc
Q 043870 92 AVASIILGGGAGTRLFPLTG-RRAKPAVPIGGCYRLIDVPMSNCIN-SGIKKIYILTQFNSQ-SLNRHISRTYNLGDGMN 168 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~-~~pK~LlpV~g~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~-~l~~~l~~~~~~~~~~~ 168 (526)
+|.+||||||.||||+||++ .+||++|++.|...|++.+++++.. .++++++|||+.... .+.+.+.+. ..+.
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~---~~~~- 76 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEI---DIEN- 76 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhh---hhcc-
Confidence 37899999999999999985 6699999996633999999999998 678999999996554 333444421 0000
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC--HHHHHHHHH---HcCCcE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD--YMDFVQHHI---NSGGDI 243 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d--l~~ll~~h~---~~~ad~ 243 (526)
. .+ .++.+.. ++|+.|+..+.-.+.. .....-++++++||+.... +.+.++... +.+.-+
T Consensus 77 ~-~~--illEP~g----------RnTApAIA~aa~~~~~--~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lV 141 (333)
T COG0836 77 A-AG--IILEPEG----------RNTAPAIALAALSATA--EGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIV 141 (333)
T ss_pred c-cc--eEeccCC----------CCcHHHHHHHHHHHHH--hCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEE
Confidence 0 01 1222211 5799998887765542 1223458999999977654 777766543 345556
Q ss_pred EEEEEEccCCcCCCceEEEEcCC------CCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHH
Q 043870 244 SVCCLPVDESRASDFGLMKIDET------GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVL 317 (526)
Q Consensus 244 ti~~~~~~~~~~~~~g~v~~d~~------g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l 317 (526)
|+...|.. ..+.||+++..+. -+|.+|.|||+....+.+. ..-.|+||+|+++|+...+
T Consensus 142 TfGI~Pt~--PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv-------------~sG~y~WNSGmF~Fra~~~ 206 (333)
T COG0836 142 TFGIPPTR--PETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYV-------------ESGEYLWNSGMFLFRASVF 206 (333)
T ss_pred EEecCCCC--CccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHH-------------HcCceEeeccceEEEHHHH
Confidence 66665543 3568999998542 3699999999976543332 1245999999999999988
Q ss_pred HHHHHhhCCCC-------------CC--------hh---hchHhhhh--cCCcEEEEEecceeeecCChhhHHHhchhh
Q 043870 318 LKVLRWHYPEA-------------ND--------FG---SEVIPMAT--KDFNVQAYLFNDYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 318 ~~ll~~~~~~~-------------~d--------~~---~dil~~li--~~~~V~~~~~~~~w~dIgt~~d~~~An~~l 370 (526)
.+.++.+.|+- .+ |. ..-+.+++ +..++.+.+.+-.|-|+|+..++.+....-
T Consensus 207 l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~~d 285 (333)
T COG0836 207 LEELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLDKD 285 (333)
T ss_pred HHHHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhhcC
Confidence 88777765531 00 10 11122222 246788888898999999999998875543
|
|
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-17 Score=166.75 Aligned_cols=236 Identities=15% Similarity=0.181 Sum_probs=156.0
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
.+++.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+.+ +++++.+.+.+++.+ ++
T Consensus 45 ~~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~V-VV~~~~e~I~~~~~~-~~------- 108 (293)
T PLN02917 45 RSRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHI-VVATDDERIAECCRG-FG------- 108 (293)
T ss_pred CCcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEE-EEECChHHHHHHHHH-cC-------
Confidence 456789999999999996 5999999999 9999999999987654443 334566677776642 21
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEE--
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISV-- 245 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti-- 245 (526)
++++...+. ...||.++ ..+...++ ...+.++++.||+ +... .+.++++.+.+. +++++
T Consensus 109 ----v~vi~~~~~-------~~~GT~~~-~~a~~~l~----~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t 171 (293)
T PLN02917 109 ----ADVIMTSES-------CRNGTERC-NEALKKLE----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFST 171 (293)
T ss_pred ----CEEEeCCcc-------cCCchHHH-HHHHHhcc----CCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEE
Confidence 223322111 12466665 56666664 1247899999999 5555 488898877553 34333
Q ss_pred EEEEccCCcCCCceEEE--EcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHh
Q 043870 246 CCLPVDESRASDFGLMK--IDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 246 ~~~~~~~~~~~~~g~v~--~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
++.+...+++.+||.++ .|++|++..|..++-.+...+ .+.+...+..++|+|.|+.+.|. .+..
T Consensus 172 ~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~------------~~~~~~i~~~n~Giy~f~~~~L~-~l~~ 238 (293)
T PLN02917 172 AVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG------------KVNPQFPYLLHLGIQSYDAKFLK-IYPE 238 (293)
T ss_pred EeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc------------ccccccceEEEEEEEEeCHHHHH-HHHc
Confidence 33344445577899886 687899887775533211000 00112447889999999999998 4444
Q ss_pred hCCC---CCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 324 HYPE---ANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 324 ~~~~---~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
..++ ...+.++++ .+-.+.+|.++..+.....|||++|+.+|+..+.+
T Consensus 239 l~~~n~e~e~yLtdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 239 LPPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred CCCCcccchhccHHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 3222 223344554 33346788888776667799999999999998744
|
|
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=4e-15 Score=144.44 Aligned_cols=210 Identities=17% Similarity=0.205 Sum_probs=141.4
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccCh-hHHHHHhhhcccCCCCcccCCC
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNS-QSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~-~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|||||||.|+||+ ...||+|++++|+ |||+|+++++..+ ++++|+|++++.. +.+.+++... .
T Consensus 2 aiIlAaG~s~R~~---~~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-----------~ 66 (217)
T TIGR00453 2 AVIPAAGRGTRFG---SGVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-----------A 66 (217)
T ss_pred EEEEcCcccccCC---CCCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-----------C
Confidence 7999999999997 3479999999999 9999999999998 7999999998764 2333333210 0
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEEEEc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~~~~ 250 (526)
.+.++. .. .+..++++.++..++ ..+.++++.||+ +++.+ +..+++.+.+. +.++++.+.
T Consensus 67 ~~~~~~--~~---------~~~~~sl~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~ 128 (217)
T TIGR00453 67 VPKIVA--GG---------DTRQDSVRNGLKALK-----DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPV 128 (217)
T ss_pred cEEEeC--CC---------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEec
Confidence 122221 11 135688888887661 237899999999 66555 78888877653 344455544
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCC
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAND 330 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d 330 (526)
. .++...|++|.+..+.++.. -+...+ .|.|+...|..+++........
T Consensus 129 ~------~~v~~~~~~g~~~~~~~r~~------------------------~~~~~~-p~~f~~~~l~~~~~~~~~~~~~ 177 (217)
T TIGR00453 129 A------DTLKRVEADGFIVETVDREG------------------------LWAAQT-PQAFRTELLKKALARAKEEGFE 177 (217)
T ss_pred c------ceEEEEcCCCceeecCChHH------------------------eEEEeC-CCcccHHHHHHHHHHHHhcCCC
Confidence 2 34555566777887777422 123344 5999999988777543222111
Q ss_pred hhhchHhhhhc-CCcEEEEEecceeeecCChhhHHHhchh
Q 043870 331 FGSEVIPMATK-DFNVQAYLFNDYWEDIGTIKSFFDANLS 369 (526)
Q Consensus 331 ~~~dil~~li~-~~~V~~~~~~~~w~dIgt~~d~~~An~~ 369 (526)
..|....+.. +.++..+..+..+++|+|++||..|+..
T Consensus 178 -~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 178 -ITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred -CCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 1232332222 5678877777777899999999988754
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-14 Score=142.65 Aligned_cols=228 Identities=16% Similarity=0.210 Sum_probs=147.2
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
+||+|+|.|+||. +|+|++++|+ |||+|+++++..+++++|+|++.. +.+.+++. .+ + +
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~-~~--------g---~ 60 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQ-KF--------G---I 60 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHH-Hc--------C---C
Confidence 7999999999995 7999999999 999999999999899999999864 34455543 22 1 2
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEEEEccC
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCCLPVDE 252 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~~~~~~ 252 (526)
.++...+.. ..|+ +.+..+...+.. ...+.++++.||. +...+ +.++++.+.+.++++++++.+..+
T Consensus 61 ~~v~~~~~~-------~~Gt-~r~~~~~~~l~~---~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d 129 (238)
T TIGR00466 61 EVCMTSKHH-------NSGT-ERLAEVVEKLAL---KDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHD 129 (238)
T ss_pred EEEEeCCCC-------CChh-HHHHHHHHHhCC---CCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 222211110 1233 334444433320 1236789999999 66665 788888876656777777777654
Q ss_pred CcC---CCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCC-
Q 043870 253 SRA---SDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA- 328 (526)
Q Consensus 253 ~~~---~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~- 328 (526)
... .....+..|.+|++..|...+.......+ ....+|+. ..++...|+|.|++++|..+..+. +..
T Consensus 130 ~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~-----~~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~~-~~~l 200 (238)
T TIGR00466 130 AEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFF-----AKRQTPVG---DNLLRHIGIYGYRAGFIEEYVAWK-PCVL 200 (238)
T ss_pred HHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcc-----cccccccc---cceeEEEEEEeCCHHHHHHHHhCC-CCcc
Confidence 211 11333444778888888766442211000 01112221 236778999999999998887652 221
Q ss_pred CChh-hchHhhhhcCCcEEEEEecce-eeecCChhhH
Q 043870 329 NDFG-SEVIPMATKDFNVQAYLFNDY-WEDIGTIKSF 363 (526)
Q Consensus 329 ~d~~-~dil~~li~~~~V~~~~~~~~-w~dIgt~~d~ 363 (526)
...+ -|-|+.+-.+++|++...+.. -..||||+|+
T Consensus 201 e~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 201 EEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred cccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1121 256777777899999888765 4599999997
|
|
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=7e-15 Score=143.85 Aligned_cols=218 Identities=17% Similarity=0.187 Sum_probs=142.0
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccCh-hHHHHHhhhcccCCCCcc
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNS-QSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~-~~l~~~l~~~~~~~~~~~ 168 (526)
+++.+||||||.|+||+ ...||+|++++|+ |||+|+++++..++ +++|+|++++.. +.+.+++....
T Consensus 2 ~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~------- 70 (227)
T PRK00155 2 MMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAKD------- 70 (227)
T ss_pred CceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhccC-------
Confidence 46789999999999996 4579999999999 99999999999865 899999998765 33322221100
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVC 246 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~ 246 (526)
..+.++. .. .+..++++.++..+.+ .+.++++.||+ ++..+ +.++++.+.+.+ .++.
T Consensus 71 ---~~~~~~~--~~---------~~~~~sv~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~ 129 (227)
T PRK00155 71 ---PKVTVVA--GG---------AERQDSVLNGLQALPD-----DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAIL 129 (227)
T ss_pred ---CceEEeC--Cc---------chHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEE
Confidence 0122221 11 2468999999877731 36899999999 56555 888998876653 3444
Q ss_pred EEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC
Q 043870 247 CLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP 326 (526)
Q Consensus 247 ~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~ 326 (526)
+.+..+ .+. ..+++|.+..+.++.. -+... +.|.|+.+.|..+++....
T Consensus 130 ~~~~~~----~~~--~v~~~g~~~~~~~r~~------------------------~~~~~-~p~~f~~~~l~~~~~~~~~ 178 (227)
T PRK00155 130 AVPVKD----TIK--RSDDGGGIVDTPDRSG------------------------LWAAQ-TPQGFRIELLREALARALA 178 (227)
T ss_pred EEeccc----cEE--EEcCCCceeecCChHH------------------------heeee-CCccchHHHHHHHHHHHHh
Confidence 444432 122 2255666665532111 11222 3799999998877765321
Q ss_pred CCCChhhchHhhhh-cCCcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 327 EANDFGSEVIPMAT-KDFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 327 ~~~d~~~dil~~li-~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
...+..+....+. .+.++..+..+..++||+|++||..|+..+.+
T Consensus 179 -~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 179 -EGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred -cCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHh
Confidence 1122222222222 24567777766678899999999999886643
|
|
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=139.68 Aligned_cols=213 Identities=18% Similarity=0.269 Sum_probs=142.1
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
.+||||||.|+||+. ..||+|+|++|+ |||+|+++++..++ +++|+|++++........+. .+... .
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~-~~~~~-------~ 69 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELA-KYGLS-------K 69 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHH-hcccC-------C
Confidence 589999999999984 379999999999 99999999999976 99999999987655444331 11111 1
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEEEEc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~~~~ 250 (526)
.+.++.. . .+..++++.++..++. ...+.++++.||+ +++.+ +.++++.+...++ .+.+.+.
T Consensus 70 ~~~~~~~--~---------~~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~ 133 (218)
T cd02516 70 VVKIVEG--G---------ATRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPV 133 (218)
T ss_pred CeEEECC--c---------hHHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEec
Confidence 1333321 1 2467889999887741 1347899999999 66655 8888888765443 3444443
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCC
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAND 330 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d 330 (526)
.+ ++...|++|.+.++.+..+ -....++ ++|+.+.|.+++...... ..
T Consensus 134 ~~------~~~~~~~~g~~~~~~~r~~------------------------~~~~~~P-~~f~~~~~~~~~~~~~~~-~~ 181 (218)
T cd02516 134 TD------TIKRVDDDGVVVETLDREK------------------------LWAAQTP-QAFRLDLLLKAHRQASEE-GE 181 (218)
T ss_pred cc------cEEEecCCCceeecCChHH------------------------hhhhcCC-CcccHHHHHHHHHHHHhc-CC
Confidence 22 2344577888988877432 2345566 999999998888664322 11
Q ss_pred hhhchHhhhhc-CCcEEEEEecceeeecCChhhHHHh
Q 043870 331 FGSEVIPMATK-DFNVQAYLFNDYWEDIGTIKSFFDA 366 (526)
Q Consensus 331 ~~~dil~~li~-~~~V~~~~~~~~w~dIgt~~d~~~A 366 (526)
+..|....+.+ ..++..+..+..-+||+|++||..|
T Consensus 182 ~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~~ 218 (218)
T cd02516 182 EFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLALA 218 (218)
T ss_pred CcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhhC
Confidence 22333333322 3467766655555699999999653
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-14 Score=134.58 Aligned_cols=120 Identities=14% Similarity=0.252 Sum_probs=90.0
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
+||||||.|+||+ .||+|+|++|+ |||+|+++++.++++++|+|++++..+.+.+++.+.+ + +
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~~--------~---v 64 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLANHS--------N---I 64 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhccCC--------C---e
Confidence 7999999999998 59999999999 9999999999999999999999988766555443221 1 4
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEE
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDIS 244 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~t 244 (526)
.++.... +..|+.++++.++.+ . ...+.+++++||+ ++.. .+..+++.+...+.+++
T Consensus 65 ~~v~~~~--------~~~g~~~si~~~l~~-~----~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~ 123 (188)
T TIGR03310 65 TLVHNPQ--------YAEGQSSSIKLGLEL-P----VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIV 123 (188)
T ss_pred EEEECcC--------hhcCHHHHHHHHhcC-C----CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEE
Confidence 4443221 225889999988762 1 1247899999999 5544 47888887766555443
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-14 Score=147.11 Aligned_cols=208 Identities=16% Similarity=0.191 Sum_probs=139.9
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
|+++.+||||||.|+||. ...||++++++|+ |||+|+++.+.+++ +++|+|++++......+.+.+.+
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~------- 71 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEI------- 71 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccC-------
Confidence 566899999999999995 4579999999999 99999999999987 79999999876654443332111
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVC 246 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~ 246 (526)
..+.++. .. .+..++++.++..++. +.+++..||. +++.+ +..+++.+.+ .+.++.
T Consensus 72 ---~~v~~v~--gG---------~~r~~SV~~gL~~l~~------d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~ 129 (378)
T PRK09382 72 ---KFVTLVT--GG---------ATRQESVRNALEALDS------EYVLIHDAARPFVPKELIDRLIEALDK--ADCVLP 129 (378)
T ss_pred ---CeEEEeC--CC---------chHHHHHHHHHHhcCC------CeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEE
Confidence 0122221 11 3467899999887753 7799999998 66665 6777776544 356777
Q ss_pred EEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC
Q 043870 247 CLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP 326 (526)
Q Consensus 247 ~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~ 326 (526)
+.++.+ +..|+...+|. .++..+ ++|... +.+.+.... .
T Consensus 130 ~~pv~D--tik~~~~tldR-~~l~~~-QTPQ~f---------------------------------~~~~l~~a~----~ 168 (378)
T PRK09382 130 ALPVAD--TLKRANETVDR-EGLKLI-QTPQLS---------------------------------RTKTLKAAA----D 168 (378)
T ss_pred EEEecc--CcEEeeeEcCc-ccEEEE-ECCCCC---------------------------------CHHHHHHHH----h
Confidence 777765 44565444442 344433 555532 122222211 1
Q ss_pred CCCChhhchHhhhh-cCCcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 327 EANDFGSEVIPMAT-KDFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 327 ~~~d~~~dil~~li-~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
...++ .|..+.+. .+.+|..+..+..|.+|+||+||..|+..+..
T Consensus 169 ~~~~~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 169 GRGDF-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCCCc-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 11222 33344433 36789998888999999999999999987643
|
|
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=132.75 Aligned_cols=120 Identities=23% Similarity=0.355 Sum_probs=93.8
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
|||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++ +++.+++.+. + +
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~---------~---~ 60 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY---------G---I 60 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT---------T---S
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc---------C---c
Confidence 7999999999998 59999999999 999999999999999999999998 3455555321 1 4
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEE
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~ 247 (526)
.++.+... ..|.+++++.+...+. ..+.|++++||+ +++.+ +..+++.+.+.++++++..
T Consensus 61 ~~v~~~~~--------~~G~~~sl~~a~~~~~-----~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 61 KVVVDPEP--------GQGPLASLLAALSQLP-----SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp EEEE-STS--------SCSHHHHHHHHHHTST-----TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred eEEEeccc--------cCChHHHHHHHHHhcc-----cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence 44444322 2699999999988772 248999999999 44554 8889998887777766544
|
... |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.5e-15 Score=143.44 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=32.2
Q ss_pred ChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCC
Q 043870 330 DFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKP 374 (526)
Q Consensus 330 d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~ 374 (526)
+| .|.++.++..+ ++..++||.|+ ++|++||+.++...
T Consensus 29 ~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~ 66 (231)
T TIGR03532 29 DF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDY 66 (231)
T ss_pred cc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcce
Confidence 44 57888888766 88889999999 99999999998764
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-13 Score=134.07 Aligned_cols=219 Identities=16% Similarity=0.162 Sum_probs=138.6
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccChhH-HHHHhhhcccCCCCccc
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNSQS-LNRHISRTYNLGDGMNF 169 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~-l~~~l~~~~~~~~~~~~ 169 (526)
.+.+||||||.|+||+ ...||+|++++|+ |||+|+++++..+ .+++|+|+++..... +.+++. .|++.
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~~~----- 71 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMK-QLNVA----- 71 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHH-hcCcC-----
Confidence 3689999999999997 4579999999999 9999999999976 489999999865422 223332 23221
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~ 247 (526)
...++++.. . .+..++++.++..+++ .+.++++.||. +...+ +.++++.+.+.++ .+.+
T Consensus 72 -~~~~~~v~~--g---------~~r~~sv~~gl~~~~~-----~d~vli~~~d~P~i~~~~i~~li~~~~~~~~--~~~~ 132 (230)
T PRK13385 72 -DQRVEVVKG--G---------TERQESVAAGLDRIGN-----EDVILVHDGARPFLTQDIIDRLLEGVAKYGA--AICA 132 (230)
T ss_pred -CCceEEcCC--C---------chHHHHHHHHHHhccC-----CCeEEEccCCCCCCCHHHHHHHHHHHhhCCc--EEEE
Confidence 111333321 1 2345889998877642 25678889999 77666 7888887766544 3333
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
.+..+ .++...+|.+....++. . ...--+.|.|+.+.|....+.....
T Consensus 133 ~~~~d-------ti~~~~~~~~~~~i~r~---~----------------------~~~~qtpq~f~~~~l~~~~~~~~~~ 180 (230)
T PRK13385 133 VEVKD-------TVKRVKDKQVIETVDRN---E----------------------LWQGQTPQAFELKILQKAHRLASEQ 180 (230)
T ss_pred Eeccc-------eEEEEcCCeeEeccCHH---H----------------------HhhhcCCceeeHHHHHHHHHHHHhc
Confidence 33322 12222345544333211 0 1112236889988887766542212
Q ss_pred CCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhc
Q 043870 328 ANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 328 ~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll 371 (526)
...+.++..-..-.+..|..+.-+...+.|+|++|+..|+..+.
T Consensus 181 ~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 181 QFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred CCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 22222222222224678888887888899999999999987663
|
|
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-13 Score=131.64 Aligned_cols=216 Identities=19% Similarity=0.241 Sum_probs=137.8
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
+.|||||+|.|+||. .|+|++++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++.+ +..
T Consensus 2 ~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~-~~~-------- 63 (223)
T cd02513 2 ILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARK-YGA-------- 63 (223)
T ss_pred eEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHH-hCC--------
Confidence 679999999999995 5999999999 99999999999987 788888764 3444555432 211
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ec-ccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LY-RMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~-~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
. +.++...... .-..|+.++++.++..++.. ....+.++++.||+ +. ...+.++++.+...+++.++.+.+
T Consensus 64 ~-~~~~~~~~~~-----~~~~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~ 136 (223)
T cd02513 64 E-VPFLRPAELA-----TDTASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTE 136 (223)
T ss_pred C-ceeeCChHHC-----CCCCCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 0 1111111100 00147889999998877520 01237899999999 44 445899999988777787777766
Q ss_pred ccCCcCCCceEEEEcCCC-CeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCC
Q 043870 250 VDESRASDFGLMKIDETG-RIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA 328 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g-~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~ 328 (526)
..+ ...++... +++| .+..+.++..... ++ ....+..++|+|+++++.+.+.
T Consensus 137 ~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------q~-~~~~~~~n~~~y~~~~~~~~~~-------- 189 (223)
T cd02513 137 FHR--FPWRALGL-DDNGLEPVNYPEDKRTRR---------------QD-LPPAYHENGAIYIAKREALLES-------- 189 (223)
T ss_pred cCc--CcHHheee-ccCCceeccCcccccCCc---------------CC-ChhHeeECCEEEEEEHHHHHhc--------
Confidence 543 22233322 2222 2222222111000 00 0134567889999999977531
Q ss_pred CChhhchHhhhhcCCcEEEEEecc-eeeecCChhhHHHhchh
Q 043870 329 NDFGSEVIPMATKDFNVQAYLFND-YWEDIGTIKSFFDANLS 369 (526)
Q Consensus 329 ~d~~~dil~~li~~~~V~~~~~~~-~w~dIgt~~d~~~An~~ 369 (526)
..+ -+.++..|.... .-+||+|++||..|+..
T Consensus 190 ~~~---------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 190 NSF---------FGGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred CCc---------cCCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 011 156777777765 57999999999998754
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.3e-14 Score=131.92 Aligned_cols=124 Identities=22% Similarity=0.230 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|.|||||||+|+||++ .||+|+|++|+ |||+|+++++..+++++|+|+++++.+.+..|+.+.+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999985 79999999999 9999999999999999999999988878777876432
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ec-ccCHHHHHHHHHHcCCcEEEEEE
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LY-RMDYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~-~~dl~~ll~~h~~~~ad~ti~~~ 248 (526)
..+.. +. -.|...++..++..+. ..++|++++||+ +. ...+..+++.+...+.+....+.
T Consensus 65 -~~~~~---~~-------g~G~~~~l~~al~~~~-----~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~ 126 (183)
T TIGR00454 65 -KDYKN---AS-------GKGYIEDLNECIGELY-----FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMI 126 (183)
T ss_pred -cEEEe---cC-------CCCHHHHHHHHhhccc-----CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEe
Confidence 11211 11 1578888888876542 237899999999 43 44588899887766555444443
|
At this time this gene appears to be present only in Archea |
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.5e-13 Score=125.55 Aligned_cols=114 Identities=17% Similarity=0.276 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
+.+||||||.|+||+ .||+|++++|+ |||+|+++.+... +++|+|++++..+. .. .+ +
T Consensus 1 ~~~iILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~----~~-~~--------~-- 58 (181)
T cd02503 1 ITGVILAGGKSRRMG-----GDKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER----YA-LL--------G-- 58 (181)
T ss_pred CcEEEECCCccccCC-----CCceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH----Hh-hc--------C--
Confidence 468999999999998 39999999999 9999999999988 99999999987543 11 11 1
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEE
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDIS 244 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~t 244 (526)
+.++.+.. |..|..++++.++..++. +.+++++||+ +.+.+ +..+++.+ ..+.+++
T Consensus 59 -~~~v~~~~--------~~~G~~~si~~~l~~~~~------~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~ 116 (181)
T cd02503 59 -VPVIPDEP--------PGKGPLAGILAALRAAPA------DWVLVLACDMPFLPPELLERLLAAA-EEGADAV 116 (181)
T ss_pred -CcEeeCCC--------CCCCCHHHHHHHHHhcCC------CeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCEE
Confidence 23333221 236899999999877643 7899999999 55555 67777765 3344433
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=123.82 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=83.5
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+++|.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+. .++++|+|+++...+. +. .+
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~----~~-~~-------- 61 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLAR----YA-AF-------- 61 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHH----HH-hc--------
Confidence 346899999999999995 269999999999 99999999998 7799999998764322 11 11
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcC
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSG 240 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ 240 (526)
+ +.++..... +..|...+++.++...+ .+.+++++||+ +++.+ +..+++.+.+.+
T Consensus 62 ~---~~~v~~~~~-------~~~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~ 118 (193)
T PRK00317 62 G---LPVIPDSLA-------DFPGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAGKDD 118 (193)
T ss_pred C---CcEEeCCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhhcCC
Confidence 0 222322111 12578899998877543 37899999999 66665 677777654333
|
|
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-12 Score=127.14 Aligned_cols=220 Identities=15% Similarity=0.155 Sum_probs=133.9
Q ss_pred CCCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccChhHHHHHhhhcccCCCCc
Q 043870 89 DPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNSQSLNRHISRTYNLGDGM 167 (526)
Q Consensus 89 ~~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~ 167 (526)
.++.+.+||||||.|+||+ ...||+|++++|+ |||+|+++.+.+. ++++|+||+++......+.+.+.+
T Consensus 21 ~~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~------ 90 (252)
T PLN02728 21 KEKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENI------ 90 (252)
T ss_pred ccCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhc------
Confidence 3556899999999999997 4579999999999 9999999999984 899999999976543333322222
Q ss_pred ccCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCC--e-ecccC-HHHHHHHHHHcCCcE
Q 043870 168 NFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGD--H-LYRMD-YMDFVQHHINSGGDI 243 (526)
Q Consensus 168 ~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD--~-l~~~d-l~~ll~~h~~~~ad~ 243 (526)
+.. +.+.. .. .+..++++.++..++. +..+|+.+| . +...+ +..+++...+.++
T Consensus 91 --~~~-i~~v~--gg---------~~r~~SV~~gl~~l~~------~~~~VlihDaarP~vs~~~i~~li~~~~~~ga-- 148 (252)
T PLN02728 91 --DVP-LKFAL--PG---------KERQDSVFNGLQEVDA------NSELVCIHDSARPLVTSADIEKVLKDAAVHGA-- 148 (252)
T ss_pred --CCc-eEEcC--CC---------CchHHHHHHHHHhccC------CCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe--
Confidence 101 22221 11 2456889999887752 234455555 4 55555 6788887766554
Q ss_pred EEEEEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHh
Q 043870 244 SVCCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 244 ti~~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
.+.+.+..+ .+...++++.|... ++...+...| +| ..|+.+.|....+.
T Consensus 149 ~i~~~~~~d------tik~v~~~~~v~~t---~~R~~l~~~Q--------TP--------------Q~F~~~~l~~a~~~ 197 (252)
T PLN02728 149 AVLGVPVKA------TIKEANSDSFVVKT---LDRKRLWEMQ--------TP--------------QVIKPELLRRGFEL 197 (252)
T ss_pred EEEeecchh------hEEEecCCCceeec---cChHHeEEEe--------CC--------------ccchHHHHHHHHHH
Confidence 455555433 23334445554432 2222111111 11 45666766655554
Q ss_pred hCCCCCChhhchHhhh-hcCCcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 324 HYPEANDFGSEVIPMA-TKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 324 ~~~~~~d~~~dil~~l-i~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
...+...+ .|-...+ ..+.+|....-+..-+-|.||+|+..|+..+..
T Consensus 198 ~~~~~~~~-TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~ 246 (252)
T PLN02728 198 VEREGLEV-TDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNE 246 (252)
T ss_pred HHhcCCCc-CcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhh
Confidence 32221112 2222222 225677776666667889999999999986643
|
|
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=129.49 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=74.2
Q ss_pred ECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEc
Q 043870 430 LEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIR 508 (526)
Q Consensus 430 I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~ 508 (526)
||++|+|++.++|.....+++ .-+.||+|+.|. +|+|.+||+||++|+++|.+.+.++..++|.++|+
T Consensus 84 IG~~n~IRE~vTi~~GT~~g~-----------g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiG 152 (260)
T COG1043 84 IGDNNTIREFVTIHRGTVQGG-----------GVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIG 152 (260)
T ss_pred ECCCCeEeeEEEEeccccCCc-----------eeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEc
Confidence 788888888888887765543 228999999987 79999999999999999999999999999999999
Q ss_pred cCcE-----EECCCCEECCCccC
Q 043870 509 SGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 509 ~g~~-----~i~~~~~i~~gt~i 526 (526)
..+. .||+.|+||.+|-|
T Consensus 153 G~saVHQFvrIG~~amiGg~S~v 175 (260)
T COG1043 153 GLSAVHQFVRIGAHAMIGGLSAV 175 (260)
T ss_pred CcceEEEEEEEcchheecccccc
Confidence 6654 88999999988753
|
|
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.7e-13 Score=124.80 Aligned_cols=120 Identities=18% Similarity=0.369 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++++..+++++|+|++++....+.+++.. + +
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~-~--------~-- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG-L--------P-- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC-C--------C--
Confidence 4689999999999984 9999999999 99999999999999999999999876554444321 1 1
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGD 242 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad 242 (526)
+.++.... +..|++++++.++..+.. ..+.+++++||+ ++.. .+..+++.+...+++
T Consensus 64 -~~~~~~~~--------~~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 64 -VVVVINPD--------WEEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred -eEEEeCCC--------hhhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 33332221 126899999999887751 247899999999 4444 478888877654544
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.5e-13 Score=113.13 Aligned_cols=103 Identities=34% Similarity=0.540 Sum_probs=88.6
Q ss_pred Ceee-cCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe
Q 043870 395 PSKI-EKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK 473 (526)
Q Consensus 395 ~~~i-~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~ 473 (526)
|++| ++++|.+++||++|.|+.+.+++|+||+++.|++++.|.+++++.+ +.||+++.|.
T Consensus 1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~ 61 (104)
T cd04651 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIR 61 (104)
T ss_pred CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEE
Confidence 3455 5778889999999999888899999999999999999999998877 8999999999
Q ss_pred ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEE
Q 043870 474 NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTI 520 (526)
Q Consensus 474 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i 520 (526)
+|+|+++++||+++++.+......+ .+.+...|+++|++++++
T Consensus 62 ~siig~~~~Ig~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 104 (104)
T cd04651 62 RAIIDKNVVIPDGVVIGGDPEEDRA----RFYVTEDGIVVVGKGMVI 104 (104)
T ss_pred eEEECCCCEECCCCEECCCcccccc----cceEcCCeEEEEecccCC
Confidence 9999999999999999987433332 556677898999988754
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-12 Score=119.53 Aligned_cols=191 Identities=15% Similarity=0.244 Sum_probs=130.4
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+..+.+||||||.|+||+ .+|.|+|+.|+ ||+.++++.+.+++.+++++|++|......+.+...
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~~--------- 67 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALLAQ--------- 67 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhcc---------
Confidence 456899999999999999 89999999999 999999999999999999999999733322222110
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~~ 247 (526)
..+.++.+. .|.+|.+.|++.+...+.. ..+.++++.||+ +...++..+++.+..++ . ..
T Consensus 68 --~~~~~v~np--------d~~~Gls~Sl~ag~~a~~~----~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~---~v 129 (199)
T COG2068 68 --LGVTVVVNP--------DYAQGLSTSLKAGLRAADA----EGDGVVLMLGDMPQVTPATVRRLIAAFRARG-A---AV 129 (199)
T ss_pred --CCeEEEeCc--------chhhhHhHHHHHHHHhccc----CCCeEEEEeCCCCCCCHHHHHHHHHhccccC-c---ee
Confidence 114444432 3458999999999988863 225899999999 44556888888776653 2 11
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
.+. | .| +..++ .+|+++.|..+ ....
T Consensus 130 ~p~-------~-------~g-------~rG~P------------------------------v~~~~~~~~~l-~~l~-- 155 (199)
T COG2068 130 RPV-------Y-------GG-------ARGHP------------------------------VLLSKDLFPAL-ARLS-- 155 (199)
T ss_pred eee-------c-------cC-------CcCCc------------------------------eeechhHHHHH-hhcC--
Confidence 111 1 01 11222 56777877544 3321
Q ss_pred CCChhhchHhhhhcCC--cEEEEEe-cceeeecCChhhHHHhchhhc
Q 043870 328 ANDFGSEVIPMATKDF--NVQAYLF-NDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 328 ~~d~~~dil~~li~~~--~V~~~~~-~~~w~dIgt~~d~~~An~~ll 371 (526)
.|-+ ...++... .+..... .+.-.|||||+||.+|+..+.
T Consensus 156 -GD~G---~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~~ 198 (199)
T COG2068 156 -GDVG---ARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLLR 198 (199)
T ss_pred -Cchh---HHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhhc
Confidence 2211 44455533 3333333 567999999999999998764
|
|
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=130.91 Aligned_cols=145 Identities=20% Similarity=0.325 Sum_probs=86.2
Q ss_pred cccCCCCCcccCCCCCCCCeee-cCeeEee-------eEECCCCEEcc-------eee-eceEECCCcEECCCCEEece-
Q 043870 377 FHFYDPQKPIFTSPRFLPPSKI-EKCRVQD-------SIISHGCFLRE-------CSV-EHSIVGIRSRLEYGVELKDT- 439 (526)
Q Consensus 377 ~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~-------s~Ig~~~~i~~-------~~v-~~s~ig~~~~I~~~~~i~~~- 439 (526)
...++|++.+..++.++|+++| .++.|.+ +.||++|.|++ +.| +++.||.+|.|++|+.|+..
T Consensus 105 ~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dg 184 (338)
T COG1044 105 TAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADG 184 (338)
T ss_pred cccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCc
Confidence 3456666666666666666666 3333322 33333333332 223 34555555555555555322
Q ss_pred ------------------EEECCcccchhHHHHHHhhCCC-cceEECCCCEEec-eEECCCCEECCCcEEccCCCcCCcc
Q 043870 440 ------------------MMMGADYYQTEAEIAALLAEGK-VPVGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAE 499 (526)
Q Consensus 440 ------------------v~~~~~~~~~~~~~~~~~~~~~-~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~ 499 (526)
+++|++ +|-++ .+.+..|. ..+.||++++|+| +.|+|||+||++|.|.+..++.+..
T Consensus 185 Fg~a~~~~g~~Ki~q~g~V~Igd~-VeIGa--nT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~ 261 (338)
T COG1044 185 FGYAGTAIGWVKIPQIGRVIIGDD-VEIGA--NTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSV 261 (338)
T ss_pred cccccccCCceEcceeceEEECCc-eEEcc--cceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccc
Confidence 222221 11111 12233332 2377888888888 8999999999999999999999999
Q ss_pred ccCCCeEEccCcEEECCCCEECCCcc
Q 043870 500 RPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 500 ~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
.+|++|.|+..+. |.....|+|+++
T Consensus 262 ~IG~~v~igg~vg-I~gh~~IgD~~~ 286 (338)
T COG1044 262 KIGKYVIIGGQVG-IAGHLEIGDGVT 286 (338)
T ss_pred eECCeEEECccee-ecCceEEcCCCE
Confidence 9999999985533 344444444443
|
|
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=130.25 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=55.5
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+.||++|.|. +++|+++|.||++|+|++.+.+..+.+++++++|+.++. .||++++|++|++|
T Consensus 102 t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V 170 (255)
T PRK12461 102 TRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRI 170 (255)
T ss_pred EEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCceE
Confidence 7888888887 599999999999999999999999999999999998875 67888888888764
|
|
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-12 Score=116.27 Aligned_cols=110 Identities=22% Similarity=0.326 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|.+||+|||+|+||. ..-|||++++|+ |||+|+++.+.+ .+++|++++..+.-.+++|+...+
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~g----------- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVG----------- 63 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcC-----------
Confidence 578999999999998 357999999999 999999999998 799999999999999999987543
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHH
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHI 237 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~ 237 (526)
++++. ++| .|-..-++.+++.+. .++|++++|+ +.+.. +..+++.+.
T Consensus 64 -v~vi~---tpG-------~GYv~Dl~~al~~l~-------~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 -VKVIE---TPG-------EGYVEDLRFALESLG-------TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred -ceEEE---cCC-------CChHHHHHHHHHhcC-------CceEEEecccccCCHHHHHHHHHHHh
Confidence 55554 222 356667777777665 5999999999 55554 555555544
|
|
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=130.85 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=55.1
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+.||+++.|. +++|+++|.||+++++++...+.++.+++++++|+.+++ .||++++|++||+|
T Consensus 106 t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V 174 (262)
T PRK05289 106 TRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGV 174 (262)
T ss_pred eEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeecce
Confidence 6788888886 589999999999999999999999999999999997765 67888888888875
|
|
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-12 Score=133.72 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=53.4
Q ss_pred eEECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 464 VGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 464 ~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+.||++|+|.+ +.|++||+||+++.|.....+....++|++++|+.++. .||++++|+++++|
T Consensus 226 t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v 294 (343)
T PRK00892 226 TVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGV 294 (343)
T ss_pred ceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCee
Confidence 67788888876 88999999999999999999999999999999997765 56777777777654
|
|
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.8e-13 Score=131.12 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=53.7
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+.||++|.|. ++.|+++|.||++|.|.+...+..+.+++++++|+.++. .||++++|+++++|
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 171 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGV 171 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEE
Confidence 7899999997 588999999999999999988889999999999987765 66788888877764
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-11 Score=119.74 Aligned_cols=215 Identities=17% Similarity=0.207 Sum_probs=141.4
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcccCCCe
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGF 173 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 173 (526)
|||||+|.++||. .|.+++++|+ |||.|+++.+.+++ +++|+|.+.. +.+.+... .|+. .
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd~--~~i~~~a~-~~g~--------~- 62 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTDD--EEIAEVAK-SYGA--------S- 62 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCCC--HHHHHHHH-HcCC--------E-
Confidence 7999999999996 5999999999 99999999999987 6778776543 44444433 3311 1
Q ss_pred EEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEEEEEEcc
Q 043870 174 VEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISVCCLPVD 251 (526)
Q Consensus 174 v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti~~~~~~ 251 (526)
+.+....... .+..|+.++++.++..++.. ...+.++++.+|. +... ++..+++.+.+.+++..+.+.+..
T Consensus 63 v~~~r~~~l~-----~d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~ 135 (222)
T TIGR03584 63 VPFLRPKELA-----DDFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFA 135 (222)
T ss_pred eEEeChHHHc-----CCCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccC
Confidence 2222111110 11257889999999887520 1247899999999 5444 589999998887788888887654
Q ss_pred CCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCCh
Q 043870 252 ESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDF 331 (526)
Q Consensus 252 ~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d~ 331 (526)
... +-....+++|++..+....... ..+.. ...|..+.++|+++++.|.+ . . .+
T Consensus 136 ~~~---~~~~~~~~~g~~~~~~~~~~~~--------------~rQd~-~~~y~~nga~y~~~~~~~~~---~----~-~~ 189 (222)
T TIGR03584 136 FPI---QRAFKLKENGGVEMFFPEHFNT--------------RSQDL-EEAYHDAGQFYWGKSQAWLE---S----G-PI 189 (222)
T ss_pred CCh---HHheEECCCCcEEecCCCcccC--------------CCCCC-chheeeCCeEEEEEHHHHHh---c----C-Cc
Confidence 321 2222445667766655321100 00110 13467899999999997752 1 1 11
Q ss_pred hhchHhhhhcCCcEEEEEecc-eeeecCChhhHHHhchhh
Q 043870 332 GSEVIPMATKDFNVQAYLFND-YWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 332 ~~dil~~li~~~~V~~~~~~~-~w~dIgt~~d~~~An~~l 370 (526)
-+.++..|..+. .-+||+|++||..|+..+
T Consensus 190 ---------~~~~~~~~~m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 190 ---------FSPHSIPIVLPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred ---------cCCCcEEEEeCccceeCCCCHHHHHHHHHHH
Confidence 135567777664 589999999999998754
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.6e-12 Score=118.30 Aligned_cols=118 Identities=20% Similarity=0.277 Sum_probs=84.5
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
+.+||||||.|+||+ ..||+|++++|+ |||+|+++++.. ++++|+|++++..+. +....+ +
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~~~--------~-- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQAGF--------G-- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---HhhccC--------C--
Confidence 468999999999997 259999999999 999999999986 599999998765322 211111 1
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcE
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDI 243 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ 243 (526)
+.++.+... +..|+.++|+.++..++. +.++++.||+ +...+ +..+++.+.+.++++
T Consensus 62 -~~~i~~~~~-------~~~g~~~si~~al~~~~~------~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 120 (186)
T TIGR02665 62 -LPVVPDALA-------DFPGPLAGILAGLRWAGT------DWVLTVPCDTPFLPEDLVARLAAALEASDADI 120 (186)
T ss_pred -CcEEecCCC-------CCCCCHHHHHHHHHhcCC------CeEEEEecCCCcCCHHHHHHHHHHhhccCCcE
Confidence 223332111 236899999999887753 7899999999 66666 667776654434443
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-12 Score=118.76 Aligned_cols=127 Identities=14% Similarity=0.219 Sum_probs=94.8
Q ss_pred CCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eeee-ceEECCCcEECCCCEEeceEEECCcccchhHHHHHH
Q 043870 381 DPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSVE-HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAAL 456 (526)
Q Consensus 381 ~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v~-~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~ 456 (526)
++.+.+.+.+.+++.+.| +++.+. .++||++|.|++ +.+. +++||++|.|++++.|.++++..+
T Consensus 9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~------------ 76 (163)
T cd05636 9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG------------ 76 (163)
T ss_pred CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC------------
Confidence 344445555556666666 455554 488899999974 6664 699999999999999988776655
Q ss_pred hhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCc------------------CCccccCCCeEEccCcE-----E
Q 043870 457 LAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGV------------------EEAERPSDGFYIRSGIT-----V 513 (526)
Q Consensus 457 ~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v------------------~~~~~~~~~~~I~~g~~-----~ 513 (526)
+.|++++.+.+++|+++++|++++++.+...- .....++++++|+.+++ +
T Consensus 77 -------~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ 149 (163)
T cd05636 77 -------TKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVK 149 (163)
T ss_pred -------CEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcE
Confidence 89999999999999999999999999763210 12356677777776654 6
Q ss_pred ECCCCEECCCccC
Q 043870 514 VLKNTTIKDGTII 526 (526)
Q Consensus 514 i~~~~~i~~gt~i 526 (526)
|+++++|++|+++
T Consensus 150 ig~~~~i~agsvV 162 (163)
T cd05636 150 IGPGSWVYPGCVV 162 (163)
T ss_pred ECCCCEECCCcEe
Confidence 6888888888875
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=117.86 Aligned_cols=123 Identities=17% Similarity=0.252 Sum_probs=86.8
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCe
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGF 173 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 173 (526)
.+||||||.|+||+ .+|+|++++|+ |||+|+++.+.+.++.+++|++++..+.+ +.+.+.. .. ...
T Consensus 2 ~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~-~~~~~~~-~~------~~~ 67 (190)
T TIGR03202 2 VAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHL-SWLDPYL-LA------DER 67 (190)
T ss_pred eEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchh-hhhhHhh-hc------CCC
Confidence 58999999999998 58999999999 99999999988889999999998765432 1121110 00 001
Q ss_pred EEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCC
Q 043870 174 VEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGG 241 (526)
Q Consensus 174 v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~a 241 (526)
+.++... .|..|.+++++.++..+.+ ...+.+++++||+ ++..+ +..+++.......
T Consensus 68 ~~~~~~~--------~~~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~ 126 (190)
T TIGR03202 68 IMLVCCR--------DACEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRRPD 126 (190)
T ss_pred eEEEECC--------ChhhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCC
Confidence 3333221 2235889999999887642 2347899999999 66666 6677766544333
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-11 Score=119.37 Aligned_cols=113 Identities=20% Similarity=0.263 Sum_probs=82.8
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
.+.+.+||||||.|+||+ .+|+|++++|+ |||+|+++.+... +++|+|++++. +. ...+.+ .
T Consensus 5 ~~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~~-~~-~~~~~~-----~---- 66 (200)
T PRK02726 5 KNNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPWP-ER-YQSLLP-----P---- 66 (200)
T ss_pred CCCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCCH-HH-HHhhcc-----C----
Confidence 345799999999999998 58999999999 9999999999764 78999988642 22 122110 0
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHH
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHI 237 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~ 237 (526)
.+.++.+.. +..|..++++.++..++. +.+++++||+ ++..+ +..+++.+.
T Consensus 67 ---~~~~i~~~~--------~~~G~~~si~~~l~~~~~------~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 67 ---GCHWLREPP--------PSQGPLVAFAQGLPQIKT------EWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred ---CCeEecCCC--------CCCChHHHHHHHHHhCCC------CcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 133443322 226899999999987753 7899999999 66665 667777654
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.6e-12 Score=121.68 Aligned_cols=145 Identities=21% Similarity=0.315 Sum_probs=93.3
Q ss_pred cCCCCCcccCCCCCCCCeee-cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCccc-chhHHH-H
Q 043870 379 FYDPQKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYY-QTEAEI-A 454 (526)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~-~~~~~~-~ 454 (526)
.+++.+.+.+.+.+++++.| +++.|.++.|+++|.|+. +.+.+++||+++.|++++.|...+.++++.. ....++ .
T Consensus 23 ~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~ 102 (193)
T cd03353 23 VIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKK 102 (193)
T ss_pred EECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEec
Confidence 44555556666666777777 567777788888888874 6677788888777777777765444443210 000000 0
Q ss_pred HHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 455 ALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 455 ~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+.+.++ +.|++.+.|.+|+|+++|.||+++++.+..+... ...++++++|+.+++ .|++++.|++|++|
T Consensus 103 s~ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V 177 (193)
T cd03353 103 STIGEG---SKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 177 (193)
T ss_pred ceEcCC---CEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEE
Confidence 111111 2333334445688888899999988887655443 456788888887754 77999999999874
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-12 Score=131.81 Aligned_cols=63 Identities=29% Similarity=0.380 Sum_probs=51.9
Q ss_pred eEECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 464 VGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 464 ~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+.||++++|.+ +.|++||+||++++|.+..++....++|++++|+.++. .||++++|+++++|
T Consensus 218 t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V 286 (324)
T TIGR01853 218 TIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV 286 (324)
T ss_pred ceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence 55666667765 78899999999999999999999999999999985553 67888888888764
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-12 Score=128.68 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=64.7
Q ss_pred ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCcc
Q 043870 421 HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAE 499 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~ 499 (526)
.++||+++.|+++|.|..+...+ ..++.||+++.|. ++.|+++|.||+++.|.+...+....
T Consensus 76 ~v~IG~~~~I~~~~~I~~~~~~~-----------------~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~ 138 (254)
T TIGR01852 76 ELIIGDNNTIREFVTINRGTASG-----------------GGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHV 138 (254)
T ss_pred eEEECCCCEECCCCEECCcccCC-----------------CCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCc
Confidence 35555555555555555544333 1237889999986 58888888889988888888888888
Q ss_pred ccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 500 RPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 500 ~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+++++++|+.++. .|+++++|+++++|
T Consensus 139 ~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 170 (254)
T TIGR01852 139 EVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAV 170 (254)
T ss_pred EECCCcEEeccCEECCCcEECCCCEEeeeeeE
Confidence 9999999987765 56777777777764
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-11 Score=117.33 Aligned_cols=104 Identities=17% Similarity=0.311 Sum_probs=74.4
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCC-cchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGG-CYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g-~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
.+++.+||||||.|+||+ .+|+|+|++| + |||+|+++++... +++|+|++++. . +. +
T Consensus 6 ~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~~--~----~~----~----- 63 (196)
T PRK00560 6 IDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKDK--K----FE----F----- 63 (196)
T ss_pred ccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECch--h----cc----c-----
Confidence 456899999999999997 6999999999 9 9999999999877 89999998851 1 10 1
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccCH-HHH
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMDY-MDF 232 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~dl-~~l 232 (526)
. +.++.+... ...|...++..++...+ .+.+++++||+ +...++ .++
T Consensus 64 -~---~~~v~d~~~-------~~~gpl~gi~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 64 -N---APFLLEKES-------DLFSPLFGIINAFLTLQ------TPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred -C---CcEEecCCC-------CCCCcHHHHHHHHHhcC------CCeEEEEecCcCcCCHHHHHHH
Confidence 0 223332111 12466667766554333 37899999999 666664 454
|
|
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-11 Score=125.80 Aligned_cols=121 Identities=19% Similarity=0.279 Sum_probs=86.5
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
++.+.+||||||.|+||+ ..||+|++++|+ |||+|+++.+.. .+++|+|+++...+.+.+++. +
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~-------~--- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLFP-------G--- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhcc-------C---
Confidence 456899999999999995 279999999999 999999999986 499999977765443332221 0
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDI 243 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ 243 (526)
+.++.+.... ..|..++++.++..++. +.+++++||+ ++..+ +..+++.+...++++
T Consensus 67 ----~~~i~d~~~g-------~~G~~~si~~gl~~~~~------~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~ 125 (366)
T PRK14489 67 ----LPVYPDILPG-------FQGPLSGILAGLEHADS------EYLFVVACDTPFLPENLVKRLSKALAIEGADI 125 (366)
T ss_pred ----CcEEecCCCC-------CCChHHHHHHHHHhcCC------CcEEEeeCCcCCCCHHHHHHHHHHhhccCCeE
Confidence 1222221111 14788999999877642 6799999999 66666 667776655555543
|
|
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-10 Score=111.63 Aligned_cols=216 Identities=18% Similarity=0.226 Sum_probs=130.5
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
+.|||||||.|+||+ ...||++++++|+ |+|.|+++.+.++ .+++|+|++........+.+...
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----------- 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----------- 65 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-----------
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-----------
Confidence 469999999999998 5789999999999 9999999999985 68999999987664333333222
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~~~ 249 (526)
..+.++.-. ..-.+|++.++..+.+ ..+.++|..|=- +...+ +.++++...+ +.+..+.+.+
T Consensus 66 ~~v~iv~GG-----------~tR~~SV~ngL~~l~~----~~d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~p 129 (221)
T PF01128_consen 66 KKVKIVEGG-----------ATRQESVYNGLKALAE----DCDIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPALP 129 (221)
T ss_dssp TTEEEEE-------------SSHHHHHHHHHHCHHC----TSSEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEEE
T ss_pred CCEEEecCC-----------hhHHHHHHHHHHHHHc----CCCEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEEe
Confidence 114444321 2467899999988874 225677766655 55554 6777777655 2344666666
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCC
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAN 329 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~ 329 (526)
+.+ .+...+++|.|.+..+...-. ..| -=..|+.+.|.+..+....+..
T Consensus 130 ~~D------Tik~v~~~~~v~~tldR~~l~---~~Q----------------------TPQ~F~~~~l~~a~~~a~~~~~ 178 (221)
T PF01128_consen 130 VTD------TIKRVDDDGFVTETLDRSKLW---AVQ----------------------TPQAFRFELLLEAYEKADEEGF 178 (221)
T ss_dssp -SS------EEEEESTTSBEEEEETGGGEE---EEE----------------------EEEEEEHHHHHHHHHTHHHHTH
T ss_pred ccc------cEEEEecCCcccccCCHHHee---eec----------------------CCCeecHHHHHHHHHHHHhcCC
Confidence 543 345566678777655433211 111 1157787877766654311111
Q ss_pred ChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhh
Q 043870 330 DFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 330 d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~l 370 (526)
.+-+|.--....+.+++...-+..=+-|.||+|+..|+..+
T Consensus 179 ~~tDdasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 179 EFTDDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp HHSSHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred CccCHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 22222211111267787776666678899999999998765
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-10 Score=108.65 Aligned_cols=235 Identities=17% Similarity=0.250 Sum_probs=165.5
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
++..+||+|-=.+|||. -|||-.|+|+ |||.|+.++..++|.++++|.|.. +++.+++.. ||
T Consensus 2 ~~~~viIPAR~~STRLp------gKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~~---------~G 63 (247)
T COG1212 2 MKFVVIIPARLASTRLP------GKPLADIGGK-PMIVRVAERALKSGADRVVVATDD--ERIAEAVQA---------FG 63 (247)
T ss_pred CceEEEEecchhcccCC------CCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHHH---------hC
Confidence 34678999998999998 7999999999 999999999999999999999964 566777653 12
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~~ 248 (526)
.. +......- ..|| +-+..+...+.- ...+-++=+.||. +.... +.++++...+.++++.-++.
T Consensus 64 ~~-avmT~~~h---------~SGT-dR~~Ev~~~l~~---~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~ 129 (247)
T COG1212 64 GE-AVMTSKDH---------QSGT-DRLAEVVEKLGL---PDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAV 129 (247)
T ss_pred CE-EEecCCCC---------CCcc-HHHHHHHHhcCC---CcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeee
Confidence 11 21111111 2466 556666555542 3446777789999 55554 78888888888888877777
Q ss_pred EccCCc---CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhC
Q 043870 249 PVDESR---ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHY 325 (526)
Q Consensus 249 ~~~~~~---~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~ 325 (526)
+..++. ..+--.+..|.+|+...|+..|-+...+. .- ..+.+--.|+|.|++.+|.++..+.
T Consensus 130 ~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~~-------------~~p~l~HIGIYayr~~~L~~f~~~~- 194 (247)
T COG1212 130 KITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-FG-------------GTPFLRHIGIYAYRAGFLERFVALK- 194 (247)
T ss_pred ecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-cC-------------CcchhheeehHHhHHHHHHHHHhcC-
Confidence 766532 12233455788999999999887653211 00 0256778999999999999988774
Q ss_pred CCCCC-hh-hchHhhhhcCCcEEEEEeccee-eecCChhhHHHhchhhcC
Q 043870 326 PEAND-FG-SEVIPMATKDFNVQAYLFNDYW-EDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 326 ~~~~d-~~-~dil~~li~~~~V~~~~~~~~w-~dIgt~~d~~~An~~ll~ 372 (526)
|..-+ .+ -|-|+.+-.++++.+......- ..+||++|+.++...+..
T Consensus 195 ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 195 PSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred CchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 33211 11 1345666678999998888655 899999999999887643
|
|
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.3e-10 Score=108.53 Aligned_cols=223 Identities=16% Similarity=0.198 Sum_probs=141.9
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChh-HHHHHhhhcccCCCCc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQ-SLNRHISRTYNLGDGM 167 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~-~l~~~l~~~~~~~~~~ 167 (526)
.+++.+||||||.|+||. ...||++++++|+ |||+|+++.+..+. |++|+|+++.... .+.++.. +
T Consensus 2 ~~~~~~vilAaG~G~R~~---~~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~------ 69 (230)
T COG1211 2 RMMVSAVILAAGFGSRMG---NPVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--L------ 69 (230)
T ss_pred CceEEEEEEcCccccccC---CCCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh--h------
Confidence 346899999999999999 4799999999999 99999999999874 7999999987443 2223321 1
Q ss_pred ccCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEE
Q 043870 168 NFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISV 245 (526)
Q Consensus 168 ~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti 245 (526)
.....+.++.-. ..-.++++.++..+.. ...+.|||..+=- +...+ +.++++...+ ....+
T Consensus 70 -~~~~~v~~v~GG-----------~~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~~~~~--~~aai 132 (230)
T COG1211 70 -SADKRVEVVKGG-----------ATRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIELADK--YGAAI 132 (230)
T ss_pred -ccCCeEEEecCC-----------ccHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHHhhcc--CCcEE
Confidence 011224444322 2467899999988872 2335666665554 44444 7777744333 34466
Q ss_pred EEEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhC
Q 043870 246 CCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHY 325 (526)
Q Consensus 246 ~~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~ 325 (526)
.+.|+.+ .+...++++.+........-.. ..+| ..|+.+.|.+.++...
T Consensus 133 ~alpv~D------Tik~~~~~~~i~~t~~R~~l~~-----------~QTP--------------Q~F~~~~L~~a~~~a~ 181 (230)
T COG1211 133 LALPVTD------TLKRVDADGNIVETVDRSGLWA-----------AQTP--------------QAFRLELLKQALARAF 181 (230)
T ss_pred EEeeccC------cEEEecCCCCeeeccChhhhhh-----------hhCC--------------ccccHHHHHHHHHHHH
Confidence 6666643 3444555677766654433210 1111 3566777776666543
Q ss_pred CCCCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 326 PEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 326 ~~~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
.+..++.+|.--....+.++..+.-+-+-+-|.||+|+..|+..+..
T Consensus 182 ~~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~~ 228 (230)
T COG1211 182 AEGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILRR 228 (230)
T ss_pred hcCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhcC
Confidence 33333333322222226788877767678899999999999987643
|
|
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-10 Score=120.53 Aligned_cols=111 Identities=10% Similarity=0.162 Sum_probs=79.3
Q ss_pred CCCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcc
Q 043870 89 DPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 89 ~~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
+.+++.+||||||.|+||+ .+|+|++++|+ |||+|+++.+... +++|+|+++..... .+. .+
T Consensus 171 ~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~~-~~~vvV~~~~~~~~---~~~-~~------- 232 (369)
T PRK14490 171 EEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRPH-CQEVFISCRAEQAE---QYR-SF------- 232 (369)
T ss_pred ccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHhh-CCEEEEEeCCchhh---HHh-hc-------
Confidence 3466899999999999998 59999999999 9999999999864 78888887654221 111 11
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHH
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQH 235 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~ 235 (526)
+ +.++.+... ..|...++..++.... .+.+++++||+ +.+.+ +..+++.
T Consensus 233 -~---v~~i~d~~~--------~~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 233 -G---IPLITDSYL--------DIGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred -C---CcEEeCCCC--------CCCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 1 334433222 1577788888766543 26799999999 66666 5555543
|
|
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.23 E-value=7e-11 Score=117.81 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=27.7
Q ss_pred cCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee-eceEECCCcEECCCCEEe
Q 043870 379 FYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELK 437 (526)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~ 437 (526)
+++|.+.+.+++.++|.+.|.. ++.||++|.|++ +.| .++.||++++|+++|.|.
T Consensus 7 ~I~~~a~ig~~~~I~p~~~I~~----~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~ 63 (254)
T cd03351 7 IVDPGAKIGENVEIGPFCVIGP----NVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIG 63 (254)
T ss_pred EECCCCEECCCCEECCCcEECC----CCEECCCCEECCCcEEeCCeEECCCCEEecceeec
Confidence 4445555555555555555532 355555555554 222 245555555555555554
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-10 Score=110.10 Aligned_cols=115 Identities=24% Similarity=0.369 Sum_probs=79.7
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccCh--hHHHHHhhhcccCCCCcccCC
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNS--QSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~--~~l~~~l~~~~~~~~~~~~~~ 171 (526)
|||||||.|+||. +|+|++++|+ |||+|+++.+..++ +++|+|+++... +.+.+++.. + +
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~-~----~----- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK-L----G----- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH-c----C-----
Confidence 7999999999995 5999999999 99999999999987 899999998765 455555431 1 1
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDIS 244 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~t 244 (526)
+.++.... .+ .+..+...+.. ...+.++++.||+ +...+ +.++++.+...+.+++
T Consensus 65 --v~~v~~~~----------~~---~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 --VKVFRGSE----------ED---VLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred --CeEEECCc----------hh---HHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 33332111 11 12222222221 2347899999999 66555 7899988876666554
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.4e-10 Score=107.08 Aligned_cols=113 Identities=20% Similarity=0.295 Sum_probs=81.8
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+++|.+||||||.|+|| .+|+|++++|+ ||++|+++.|....- .++|....+.+. +.. +
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~----------~ 60 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YAE----------F 60 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hhc----------c
Confidence 45689999999999999 48999999999 999999999998755 566665544321 111 1
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccCH-HHHHHHHHHcC
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMDY-MDFVQHHINSG 240 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~dl-~~ll~~h~~~~ 240 (526)
+ ++++.+... + .|...+++.++..+.. +.+++++||+ +...++ ..+.+...+.+
T Consensus 61 g---~~vv~D~~~-------~-~GPL~Gi~~al~~~~~------~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 61 G---LPVVPDELP-------G-FGPLAGILAALRHFGT------EWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred C---CceeecCCC-------C-CCCHHHHHHHHHhCCC------CeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 1 445554333 1 2899999999887753 7899999999 666664 55555544433
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-10 Score=110.10 Aligned_cols=144 Identities=22% Similarity=0.320 Sum_probs=87.7
Q ss_pred cCCCCCcccCCCCCCCCeee-cCeeE-eeeEECCCCEEcc-eee-eceEECCCcEECCCCEEec----------------
Q 043870 379 FYDPQKPIFTSPRFLPPSKI-EKCRV-QDSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKD---------------- 438 (526)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~i-~~~~i-~~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~---------------- 438 (526)
++++.+.+...+.+++.+.| .++.| .++.||++|+|+. +.+ .+++||+++.|++++.|..
T Consensus 9 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~ 88 (205)
T cd03352 9 SIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIP 88 (205)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcC
Confidence 44555555556666666666 33555 3477777777764 444 3366666666666666631
Q ss_pred ---eEEECCccc-chhHHHHHHhhCC-CcceEECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE
Q 043870 439 ---TMMMGADYY-QTEAEIAALLAEG-KVPVGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT 512 (526)
Q Consensus 439 ---~v~~~~~~~-~~~~~~~~~~~~~-~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~ 512 (526)
.+.++.+.+ ..... +..+ ...+.||+++.|.+ +.|+++++||+++.|.+...+.....++++++|+.+++
T Consensus 89 ~~~~v~Ig~~~~Ig~~~~----i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~ 164 (205)
T cd03352 89 QLGGVIIGDDVEIGANTT----IDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVG 164 (205)
T ss_pred CcceEEECCCEEECCCCE----EeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCE
Confidence 233332211 10000 0000 11256777777764 77888888888888888888888888899999987765
Q ss_pred -----EECCCCEECCCccC
Q 043870 513 -----VVLKNTTIKDGTII 526 (526)
Q Consensus 513 -----~i~~~~~i~~gt~i 526 (526)
+|++++.|++++++
T Consensus 165 v~~~~~ig~~~~i~~~s~v 183 (205)
T cd03352 165 IAGHLTIGDGVVIGAGSGV 183 (205)
T ss_pred EeCCcEECCCCEEcCCCEE
Confidence 56777777777653
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-10 Score=117.72 Aligned_cols=149 Identities=18% Similarity=0.204 Sum_probs=90.6
Q ss_pred cCChhhHHHhchhhcCCCC-CcccCCCCCcccCCCCCCCCeee-cCeeEee-eEECCCCEEcc-eee-eceEECCCcEEC
Q 043870 357 IGTIKSFFDANLSLTDKPP-KFHFYDPQKPIFTSPRFLPPSKI-EKCRVQD-SIISHGCFLRE-CSV-EHSIVGIRSRLE 431 (526)
Q Consensus 357 Igt~~d~~~An~~ll~~~~-~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~-s~Ig~~~~i~~-~~v-~~s~ig~~~~I~ 431 (526)
..+|.-.+.....++.+++ .+.-+.|.+.+.+++.+.+++.| +++.|.. +.||++|.|.. +.| .++.||+++.|.
T Consensus 78 ~~~P~~~fA~~~~~f~~~~~~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~ 157 (338)
T COG1044 78 VKDPYLAFAKVAQLFYRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIH 157 (338)
T ss_pred eCCchHHHHHHHHHhccCCccccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEc
Confidence 3445555555555554443 34567788888888888888888 4555543 66777777764 333 555666666666
Q ss_pred CCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe--------------------ceEECCCCEECCCcEEcc
Q 043870 432 YGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK--------------------NCIIDKNAKIGKNVIIAN 491 (526)
Q Consensus 432 ~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~--------------------~~iI~~~~~Ig~~~~i~~ 491 (526)
.++.|...+++|++ |.|++|+.|. +++|++++.||.|+.|.-
T Consensus 158 ~~v~I~~~~~IG~~------------------v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idr 219 (338)
T COG1044 158 PNVTIYHNVVIGNN------------------VIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDR 219 (338)
T ss_pred CCCEEecCcEECCc------------------eEECCCCEEccCccccccccCCceEcceeceEEECCceEEcccceecc
Confidence 66666555555554 5555555544 344455555555555532
Q ss_pred CCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 492 KDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 492 ~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
+.-+.+.+++++.|... +-|++|+.||.+|.|
T Consensus 220 --ga~~dTvIg~~~kIdN~-vqIaHnv~IG~~~~I 251 (338)
T COG1044 220 --GALDDTVIGEGVKIDNL-VQIGHNVRIGEHCII 251 (338)
T ss_pred --ccccCceecCCcEEcce-eEEccccEECCCcEE
Confidence 22345788888888654 566888888888865
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=110.44 Aligned_cols=89 Identities=16% Similarity=0.303 Sum_probs=62.9
Q ss_pred CCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhh
Q 043870 380 YDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLA 458 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~ 458 (526)
+.+...+...+++.|.++|.. ++.||++|+|++ +.|.++.||+++.|++++.|.++++..+
T Consensus 12 ~~~~v~ig~~~~I~~~a~i~~----~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~-------------- 73 (193)
T cd03353 12 IDGDVEIGVDVVIDPGVILEG----KTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNG-------------- 73 (193)
T ss_pred EcCCeEECCCcEECCCCEEeC----cCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCC--------------
Confidence 334444444444444444432 488999999974 7788889999999999999987665444
Q ss_pred CCCcceEECCCCEEe-ceEECCCCEECCCcEEcc
Q 043870 459 EGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIAN 491 (526)
Q Consensus 459 ~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 491 (526)
+.||+++.|+ +++|+++++|++++.+.+
T Consensus 74 -----~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~ 102 (193)
T cd03353 74 -----ATVGPFAHLRPGTVLGEGVHIGNFVEIKK 102 (193)
T ss_pred -----CEECCccEEcCccEECCCCEECCcEEEec
Confidence 6788888886 577777777777666543
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-10 Score=113.94 Aligned_cols=125 Identities=15% Similarity=0.177 Sum_probs=71.8
Q ss_pred cCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee-eceEECCCcEECCCCEEec------------eEEECC
Q 043870 379 FYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKD------------TMMMGA 444 (526)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~------------~v~~~~ 444 (526)
++++.+.+...+.++|.+.|.. ++.|+++|+|++ |.| .+++||+++.|++++.|.. .+.+|+
T Consensus 6 ~I~~~a~Ig~~~~I~~~~~I~~----~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~ 81 (254)
T TIGR01852 6 IIEPGAEIGENVEIGPFCIVGP----GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGD 81 (254)
T ss_pred EeCCCCEECCCCEECCCCEECC----CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECC
Confidence 4455555666666666666533 355666666654 333 3688888888888888864 455555
Q ss_pred cccchhHHHHHHhhCCCcceEECCCCEEeceEE-C-CCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCC
Q 043870 445 DYYQTEAEIAALLAEGKVPVGIGRDTKIKNCII-D-KNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKN 517 (526)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI-~-~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~ 517 (526)
+ +.|+++|.|..... + .+++||+++.|.....+...+.++++++|+.++. +||++
T Consensus 82 ~------------------~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~ 143 (254)
T TIGR01852 82 N------------------NTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDY 143 (254)
T ss_pred C------------------CEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCC
Confidence 4 56666666652211 1 2445555555544444445556666666665543 44666
Q ss_pred CEECCCcc
Q 043870 518 TTIKDGTI 525 (526)
Q Consensus 518 ~~i~~gt~ 525 (526)
+.|+++++
T Consensus 144 ~~Ig~~~~ 151 (254)
T TIGR01852 144 AIIGGLVA 151 (254)
T ss_pred cEEeccCE
Confidence 66555554
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-09 Score=113.69 Aligned_cols=109 Identities=12% Similarity=0.156 Sum_probs=79.6
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
++.+||||||.|+||+ .+|.|+|+.|+ ||++|+++.+... +++|+|+++... ..+ +.+.
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~~-~~~ViVv~~~~~---~~~----~~~~------- 218 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAKY-CEQVFLSARPSQ---WQG----TPLE------- 218 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHhh-CCEEEEEeCchH---hhh----cccc-------
Confidence 5789999999999998 69999999999 9999999888764 889988886421 111 0000
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHH
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHH 236 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h 236 (526)
.+.++.+... ..|...+|+.++..... +.+++++||+ +...+ +..+++.+
T Consensus 219 -~v~~I~D~~~--------~~GPlagI~aaL~~~~~------~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 219 -NLPTLPDRGE--------SVGPISGILTALQSYPG------VNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred -CCeEEeCCCC--------CCChHHHHHHHHHhCCC------CCEEEEECCcCCCCHHHHHHHHHhh
Confidence 0233333222 26999999999876542 5789999999 66666 56666654
|
|
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-10 Score=113.21 Aligned_cols=129 Identities=14% Similarity=0.197 Sum_probs=69.0
Q ss_pred CCCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eee-eceEECCCcEECCCCEEec------------eEEEC
Q 043870 380 YDPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKD------------TMMMG 443 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~------------~v~~~ 443 (526)
++|.+.+.+++.+++++.| +.|.|. ++.||++|.|+. +.| .+++||++|+|+++|.|.. .+.+|
T Consensus 5 I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG 84 (262)
T PRK05289 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIG 84 (262)
T ss_pred cCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEEC
Confidence 3444444444444444444 233332 467777777764 333 3566666666666666654 34444
Q ss_pred CcccchhHHHHHHhhCCCcceEECCCCEEeceEE--CCCCEECCCcEEccCCCcCCccccCCCeEEccCc-----EEECC
Q 043870 444 ADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCII--DKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGI-----TVVLK 516 (526)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI--~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~-----~~i~~ 516 (526)
++ +.|++++.|..+.+ +.+++||+++.|.....+...+.+++++.|..++ ++|++
T Consensus 85 ~~------------------~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd 146 (262)
T PRK05289 85 DN------------------NTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGD 146 (262)
T ss_pred CC------------------CEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCC
Confidence 43 45555555543210 1124555555555554454555666666665443 36677
Q ss_pred CCEECCCccC
Q 043870 517 NTTIKDGTII 526 (526)
Q Consensus 517 ~~~i~~gt~i 526 (526)
++.||++++|
T Consensus 147 ~~~Ig~~~~i 156 (262)
T PRK05289 147 YAIIGGLTAV 156 (262)
T ss_pred cEEEeeccee
Confidence 7777777654
|
|
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.3e-10 Score=112.39 Aligned_cols=111 Identities=17% Similarity=0.321 Sum_probs=71.7
Q ss_pred ccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee----eceEECCCcEECCCCEEec----------eEEECCcccchh
Q 043870 386 IFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV----EHSIVGIRSRLEYGVELKD----------TMMMGADYYQTE 450 (526)
Q Consensus 386 i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v----~~s~ig~~~~I~~~~~i~~----------~v~~~~~~~~~~ 450 (526)
+...+.+.|.+.+.+ ++.||++|.|.. |.| ..++||++|.|+++|.|.. .+++|++
T Consensus 55 I~~~~~I~p~A~V~G----~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~----- 125 (269)
T PLN02296 55 VDKDAFVAPSASVIG----DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDN----- 125 (269)
T ss_pred cCCCCEECCCcEEEc----ceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCC-----
Confidence 444445555554432 345555555542 333 2468999999999999862 2455554
Q ss_pred HHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 451 AEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 451 ~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
+.||.||.|.+|+|+++|.||.+++|.... ++++++.|+.|+++ .++++|+++++
T Consensus 126 -------------v~IG~~avI~g~~Igd~v~IG~ga~I~~gv------~Ig~~a~IgagSvV-~~~~~I~~~~~ 180 (269)
T PLN02296 126 -------------VTIGHSAVLHGCTVEDEAFVGMGATLLDGV------VVEKHAMVAAGALV-RQNTRIPSGEV 180 (269)
T ss_pred -------------CEECCCceecCCEECCCcEECCCcEECCCe------EECCCCEECCCCEE-ecCCEeCCCeE
Confidence 778888888888888888888888887553 56666667666444 56666666654
|
|
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.9e-10 Score=101.24 Aligned_cols=95 Identities=19% Similarity=0.362 Sum_probs=66.2
Q ss_pred eeEECCCCEEcc-eeee----ceEECCCcEECCCCEE-----eceEEECCcccchhHHHHHHhhCCCcceEECCCCEEec
Q 043870 405 DSIISHGCFLRE-CSVE----HSIVGIRSRLEYGVEL-----KDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN 474 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v~----~s~ig~~~~I~~~~~i-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~ 474 (526)
++.||++|+|++ |.+. .+.||++|.|+++|.| .++++ +++ +.|++++.|.+
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~I-g~~------------------~~Ig~~~~i~~ 78 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVL-EEN------------------GHIGHGAILHG 78 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEE-cCC------------------CEECCCcEEEC
Confidence 466777777763 4454 3789999999999999 33444 443 78899998889
Q ss_pred eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 475 CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 475 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
|+|+++|.||.+++|.... +++++++|+.+++ +.++..|+++++
T Consensus 79 ~~Ig~~~~Ig~~~~I~~g~------~Ig~~~~Ig~~s~-v~~~~~i~~~~~ 122 (155)
T cd04745 79 CTIGRNALVGMNAVVMDGA------VIGEESIVGAMAF-VKAGTVIPPRSL 122 (155)
T ss_pred CEECCCCEECCCCEEeCCC------EECCCCEECCCCE-eCCCCEeCCCCE
Confidence 9999999999998887653 4556666665543 245555555543
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-10 Score=104.06 Aligned_cols=98 Identities=13% Similarity=0.217 Sum_probs=74.0
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGK 485 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~ 485 (526)
+.|++++.|.. .++||++|+|+++|.|+..++++++ +.|++++.|.+|+|+++++|+.
T Consensus 24 ~~I~~~a~i~~----~v~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~siig~~~~I~~ 81 (163)
T cd05636 24 AIVRSGAYIEG----PVIIGKGCEIGPNAYIRGYTVLGDG------------------CVVGNSVEVKNSIIMDGTKVPH 81 (163)
T ss_pred CEECCCCEEeC----CeEECCCCEECCCCEEcCCCEECCC------------------CEECCCcEEeeeEecCCCEecc
Confidence 44555555443 7999999999999999976666665 8999999999999999999999
Q ss_pred CcEEccCCCcCCccccCCCeEEccC-----------------------cEEECCCCEECCCccC
Q 043870 486 NVIIANKDGVEEAERPSDGFYIRSG-----------------------ITVVLKNTTIKDGTII 526 (526)
Q Consensus 486 ~~~i~~~~~v~~~~~~~~~~~I~~g-----------------------~~~i~~~~~i~~gt~i 526 (526)
++.+.++ .+.++.++++++.+..+ .++|++++.||++++|
T Consensus 82 ~~~i~~s-iIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i 144 (163)
T cd05636 82 LNYVGDS-VLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSL 144 (163)
T ss_pred CCEEecC-EECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEE
Confidence 8888654 46677777777766321 1466777777777653
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-09 Score=102.16 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=59.8
Q ss_pred eeEECCCCEEcc-eeee----ceEECCCcEECCCCEEeceEE----------ECCcccchhHHHHHHhhCCCcceEECCC
Q 043870 405 DSIISHGCFLRE-CSVE----HSIVGIRSRLEYGVELKDTMM----------MGADYYQTEAEIAALLAEGKVPVGIGRD 469 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v~----~s~ig~~~~I~~~~~i~~~v~----------~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 469 (526)
++.||++|+|++ +.+. .++||++|.|+++|.|.+++. +|++ +.|+.+
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~------------------~~i~~~ 78 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSN------------------NVFEVG 78 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCC------------------CEECCC
Confidence 355666666653 3342 368899999999998887654 3332 444555
Q ss_pred CEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 470 TKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 470 ~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
+.|.+++||++|.||.+++|.... .+++++.|+.++++ .+++.|+++++
T Consensus 79 ~~i~~~~IGd~~~Ig~~a~I~~gv------~Ig~~~~IgagsvV-~~~~~i~~~~v 127 (164)
T cd04646 79 CKCEALKIGNNNVFESKSFVGKNV------IITDGCIIGAGCKL-PSSEILPENTV 127 (164)
T ss_pred cEEEeeEECCCCEEeCCCEECCCC------EECCCCEEeCCeEE-CCCcEECCCeE
Confidence 666677778888888877776543 45555555555332 55555555544
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.3e-10 Score=105.20 Aligned_cols=96 Identities=13% Similarity=0.321 Sum_probs=66.3
Q ss_pred eeEECCCCEEcc-eeee----ceEECCCcEECCCCEEec----eEEECCcccchhHHHHHHhhCCCcceEECCCCEEece
Q 043870 405 DSIISHGCFLRE-CSVE----HSIVGIRSRLEYGVELKD----TMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNC 475 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v~----~s~ig~~~~I~~~~~i~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ 475 (526)
++.||++|.|+. |.|. .++||++|.|+++|.|+. .++++++ +.||+++.|.+|
T Consensus 26 ~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~------------------~~Ig~~a~I~~s 87 (192)
T TIGR02287 26 DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN------------------GHVGHGAILHGC 87 (192)
T ss_pred eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC------------------CEECCCCEEcCC
Confidence 466677777763 4443 478899999999999942 2334443 789999999999
Q ss_pred EECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 476 IIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 476 iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
+|+++|.||.++++.+.. ++++++.|+.|+. |.++..|+++++
T Consensus 88 iIg~~~~IG~ga~I~~g~------~IG~~s~Vgags~-V~~~~~ip~~~l 130 (192)
T TIGR02287 88 IVGRNALVGMNAVVMDGA------VIGENSIVAASAF-VKAGAEMPAQYL 130 (192)
T ss_pred EECCCCEECCCcccCCCe------EECCCCEEcCCCE-ECCCCEECCCeE
Confidence 999999999998886653 4556666665543 355556655543
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.6e-10 Score=120.78 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=30.6
Q ss_pred eEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEEC
Q 043870 406 SIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIG 484 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig 484 (526)
+.||++|.|+. +.|.+++||++|+|+++|.|...+.+|++ +.||+++.|.+++|++++.|+
T Consensus 287 ~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~------------------~~Ig~~~~i~~~~i~~~~~i~ 348 (446)
T PRK14353 287 VTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEG------------------AKVGNFVEVKNAKLGEGAKVN 348 (446)
T ss_pred CEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCC------------------eEEcCceEEeceEECCCCEEC
Confidence 34444444432 33444555555555555555433333333 445555555555555555444
Q ss_pred CCcEEc
Q 043870 485 KNVIIA 490 (526)
Q Consensus 485 ~~~~i~ 490 (526)
.++.+.
T Consensus 349 ~~~~i~ 354 (446)
T PRK14353 349 HLTYIG 354 (446)
T ss_pred CeeEEc
Confidence 444443
|
|
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.3e-10 Score=111.25 Aligned_cols=126 Identities=14% Similarity=0.230 Sum_probs=70.7
Q ss_pred cCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee-eceEECCCcEECCCCEEec------------eEEECC
Q 043870 379 FYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKD------------TMMMGA 444 (526)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~------------~v~~~~ 444 (526)
.++|.+.+...+.++|.+.|.+ ++.||++|.|+. +.| .++.||+++.|++++.|+. .+.+|+
T Consensus 7 ~I~~~a~Ig~~v~Igp~~~I~~----~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~ 82 (255)
T PRK12461 7 VIDPSAKLGSGVEIGPFAVIGA----NVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGD 82 (255)
T ss_pred EECCCCEECCCCEECCCCEECC----CCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECC
Confidence 3344444444444444444422 466777777764 333 2455555555555555543 233333
Q ss_pred cccchhHHHHHHhhCCCcceEECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCc-----EEECCCC
Q 043870 445 DYYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGI-----TVVLKNT 518 (526)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~-----~~i~~~~ 518 (526)
+ +.|++++.|.. +.++.+++||+++.|.+...+...+.+++++.|+.++ ++|++++
T Consensus 83 ~------------------~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a 144 (255)
T PRK12461 83 R------------------NVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRA 144 (255)
T ss_pred c------------------eEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCe
Confidence 2 34444444432 3334567777777777666677777778888877554 3677888
Q ss_pred EECCCccC
Q 043870 519 TIKDGTII 526 (526)
Q Consensus 519 ~i~~gt~i 526 (526)
.|+++++|
T Consensus 145 ~Ig~~a~V 152 (255)
T PRK12461 145 IISGNCLV 152 (255)
T ss_pred EEeCCCEE
Confidence 87777653
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-10 Score=116.70 Aligned_cols=125 Identities=14% Similarity=0.258 Sum_probs=94.9
Q ss_pred cCCCCCc-ccCCCCCCCCeee-cCeeEee-eEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHH
Q 043870 379 FYDPQKP-IFTSPRFLPPSKI-EKCRVQD-SIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIA 454 (526)
Q Consensus 379 ~~~~~~~-i~~~~~~~~~~~i-~~~~i~~-s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~ 454 (526)
++||... |.....+++.+.| .++.+.+ +.||++|+|++ |.|++|.||+++.|...+.|.++.+-.+
T Consensus 257 l~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~---------- 326 (460)
T COG1207 257 LIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG---------- 326 (460)
T ss_pred EeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC----------
Confidence 4677644 5677788888888 5677765 89999999985 6779999999999998899988877655
Q ss_pred HHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 455 ALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 455 ~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
+.||..++|| ++.++.+++||..|.+.++ .+.+.+..+.-+|||+ ..||+++.||+||+
T Consensus 327 ---------~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a-~ig~gsKa~HLtYlGD--A~iG~~~NiGAGtI 386 (460)
T COG1207 327 ---------ATVGPFARLRPGAVLGADVHIGNFVEVKKA-TIGKGSKAGHLTYLGD--AEIGENVNIGAGTI 386 (460)
T ss_pred ---------cccCCccccCCcCcccCCCeEeeeEEEecc-cccCCccccceeeecc--ceecCCceeccceE
Confidence 7899999999 6999999999999999876 4565555555556554 34455555555553
|
|
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.4e-10 Score=110.34 Aligned_cols=112 Identities=13% Similarity=0.120 Sum_probs=59.4
Q ss_pred CCCCcccCCCCCCCCeee-cCeeEeeeEECCCCEEcc-eee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHh
Q 043870 381 DPQKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALL 457 (526)
Q Consensus 381 ~~~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~ 457 (526)
++...+.+.+.+.++++| +++.|..+.|+.|+.|++ +.| .++.||.++.||++|.|..++.+++.. .
T Consensus 101 ~~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~----------~ 170 (272)
T PRK11830 101 EAGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVL----------E 170 (272)
T ss_pred cCCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCc----------c
Confidence 334444444445555555 344444444444444443 222 245666666666666666665555421 0
Q ss_pred hCCCcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccC
Q 043870 458 AEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPS 502 (526)
Q Consensus 458 ~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~ 502 (526)
-....|+.||++|.|. +|.|..+++||++++|+....+....++.
T Consensus 171 ~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~ 216 (272)
T PRK11830 171 PLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIY 216 (272)
T ss_pred ccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEEC
Confidence 1122357777777776 46777777777777776665555544444
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=89.35 Aligned_cols=64 Identities=23% Similarity=0.485 Sum_probs=33.9
Q ss_pred ECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCC
Q 043870 408 ISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKN 486 (526)
Q Consensus 408 Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 486 (526)
||++|.|++ +.+.++.||+++.|+.+|+|++++++.+ +.||+++.|.+|+|++++.||++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 344444432 3334555555555555555555554443 45555555555555555555555
Q ss_pred cEEc
Q 043870 487 VIIA 490 (526)
Q Consensus 487 ~~i~ 490 (526)
+.+.
T Consensus 63 ~~v~ 66 (81)
T cd04652 63 CKLK 66 (81)
T ss_pred CEEc
Confidence 5554
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.8e-10 Score=89.79 Aligned_cols=77 Identities=17% Similarity=0.404 Sum_probs=67.3
Q ss_pred CCCCeee-cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCC
Q 043870 392 FLPPSKI-EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRD 469 (526)
Q Consensus 392 ~~~~~~i-~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 469 (526)
+++.+.| +++.+.++.|+++|.|+. +.|++++|++++.|+++|.|.+++++.+ +.||++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCC
Confidence 4556666 466677899999999974 7889999999999999999999888877 899999
Q ss_pred CEEeceEECCCCEECCCc
Q 043870 470 TKIKNCIIDKNAKIGKNV 487 (526)
Q Consensus 470 ~~i~~~iI~~~~~Ig~~~ 487 (526)
+.+.+|+|+++++|++++
T Consensus 63 ~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 63 CKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred CEEccCEECCCcEeCCCC
Confidence 999999999999999875
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-09 Score=104.97 Aligned_cols=95 Identities=19% Similarity=0.318 Sum_probs=63.0
Q ss_pred eeEECCCCEEcc-eeee----ceEECCCcEECCCCEEece----EEECCcccchhHHHHHHhhCCCcceEECCCCEEece
Q 043870 405 DSIISHGCFLRE-CSVE----HSIVGIRSRLEYGVELKDT----MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNC 475 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v~----~s~ig~~~~I~~~~~i~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ 475 (526)
++.||++|.|+. +.|. .++||.+|.|+++|.|+.. ++++++ +.||.++.|.+|
T Consensus 28 ~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~------------------~~Ig~~a~i~g~ 89 (196)
T PRK13627 28 DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGEN------------------GHIGHGAILHGC 89 (196)
T ss_pred ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCC------------------CEECCCcEEeeE
Confidence 345555555553 3332 2578888888888888654 234443 788888888899
Q ss_pred EECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCc
Q 043870 476 IIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGT 524 (526)
Q Consensus 476 iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt 524 (526)
+|+++|.||.++++.+.. ++++++.|+.|++| .++..+++++
T Consensus 90 vIG~~v~IG~ga~V~~g~------~IG~~s~Vgags~V-~~~~~ip~~~ 131 (196)
T PRK13627 90 VIGRDALVGMNSVIMDGA------VIGEESIVAAMSFV-KAGFQGEKRQ 131 (196)
T ss_pred EECCCCEECcCCccCCCc------EECCCCEEcCCCEE-eCCcCcCCCc
Confidence 999999999998887654 45556666666444 4555555544
|
|
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=107.76 Aligned_cols=111 Identities=15% Similarity=0.262 Sum_probs=70.9
Q ss_pred ccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee----eceEECCCcEECCCCEEec----------eEEECCcccchh
Q 043870 386 IFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV----EHSIVGIRSRLEYGVELKD----------TMMMGADYYQTE 450 (526)
Q Consensus 386 i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v----~~s~ig~~~~I~~~~~i~~----------~v~~~~~~~~~~ 450 (526)
+...+.+.|++.+.+ ++.||++|.|.. +.| ...+||.++.|+++|.|+. .+++|++
T Consensus 62 i~~~~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~----- 132 (246)
T PLN02472 62 VAVDAYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRY----- 132 (246)
T ss_pred cCCCCEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCC-----
Confidence 444455555555532 244444444442 222 2368999999999999952 3556654
Q ss_pred HHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 451 AEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 451 ~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
+.||++|.|.+|+|+++|.||.+++|.+.. .+++++.|+.|++ +..+..|++|++
T Consensus 133 -------------v~IG~~s~L~~~~Igd~v~IG~~svI~~ga------vIg~~~~Ig~gsv-V~~g~~Ip~g~~ 187 (246)
T PLN02472 133 -------------VTIGAYSLLRSCTIEPECIIGQHSILMEGS------LVETHSILEAGSV-LPPGRRIPTGEL 187 (246)
T ss_pred -------------CEECCCcEECCeEEcCCCEECCCCEECCCC------EECCCCEECCCCE-ECCCCEeCCCCE
Confidence 889999999999999999999999887654 4455555555532 245555555543
|
|
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-09 Score=112.95 Aligned_cols=153 Identities=17% Similarity=0.185 Sum_probs=107.1
Q ss_pred eeeecCChhhHHH-hchhhcCCCCCcccCCCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eee-eceEECCC
Q 043870 353 YWEDIGTIKSFFD-ANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSV-EHSIVGIR 427 (526)
Q Consensus 353 ~w~dIgt~~d~~~-An~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v-~~s~ig~~ 427 (526)
.+.-+++|..-+. +...+.........++|++.+.+++.+++.+.| +.+.|. ++.||++|.|+. +.| .+++||++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 3566778875443 333332222223457777777777777777777 445443 366777777763 444 57888888
Q ss_pred cEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe---------------------ceEECCCCEECCC
Q 043870 428 SRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK---------------------NCIIDKNAKIGKN 486 (526)
Q Consensus 428 ~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~---------------------~~iI~~~~~Ig~~ 486 (526)
|.|+++|+|.+.+++|++ +.|+++|.|. +++|++++.||++
T Consensus 146 ~~I~~~~~I~~~~~IG~~------------------~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~ 207 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKN------------------VIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGAN 207 (324)
T ss_pred ceECCCcEECCCCEECCC------------------CEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCC
Confidence 888888888877777775 7777777773 4889999999999
Q ss_pred cEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 487 VIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 487 ~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
++|.... .+.+++++++.|...+ .|++|+.||++++|
T Consensus 208 ~~I~r~~--~~~t~Ig~~~~I~n~v-~I~~~v~IG~~~~I 244 (324)
T TIGR01853 208 TTIDRGA--FDDTIIGEGTKIDNLV-QIAHNCRIGENCII 244 (324)
T ss_pred CEEecCC--cCcceecCCcEEccCc-EECCCCEECCCcEE
Confidence 9997653 4678899999998875 56888888888764
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.2e-10 Score=118.87 Aligned_cols=118 Identities=14% Similarity=0.214 Sum_probs=74.9
Q ss_pred CCCCCCCCeee-cCeeEee-eEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcce
Q 043870 388 TSPRFLPPSKI-EKCRVQD-SIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPV 464 (526)
Q Consensus 388 ~~~~~~~~~~i-~~~~i~~-s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 464 (526)
+.+.+++.+.| +++.|.+ +.||++|.|++ |.|.+++||++|+|+++|.|.++++..+ +
T Consensus 260 ~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~-------------------~ 320 (451)
T TIGR01173 260 GTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEG-------------------C 320 (451)
T ss_pred CccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCC-------------------c
Confidence 33445555666 4555553 78888888874 6678899999999998888877655444 6
Q ss_pred EECCCCEEe-ceEECCCCEECCCcEEccCCCcC-----------CccccCCCeEEccCc------------EEECCCCEE
Q 043870 465 GIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVE-----------EAERPSDGFYIRSGI------------TVVLKNTTI 520 (526)
Q Consensus 465 ~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~-----------~~~~~~~~~~I~~g~------------~~i~~~~~i 520 (526)
.||+++.|. +++|+++|+||+++.+.++ .+. ....+++++.|+.++ ++||+++.|
T Consensus 321 ~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~-~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~i 399 (451)
T TIGR01173 321 DVGPFARLRPGSVLGAGVHIGNFVETKNA-RIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFI 399 (451)
T ss_pred EECCeeEECCCCEECCCcEEccceeecCc-EECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEE
Confidence 777777776 3666666666665554422 111 124455555555443 456777777
Q ss_pred CCCcc
Q 043870 521 KDGTI 525 (526)
Q Consensus 521 ~~gt~ 525 (526)
|.|++
T Consensus 400 g~~~~ 404 (451)
T TIGR01173 400 GSNTQ 404 (451)
T ss_pred CCCCE
Confidence 77664
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=118.61 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=96.9
Q ss_pred eeecCChhhHHHhchhh-cCCC---CCccc-----------CCCCCc-ccCCCCCCCCeee-cCeeEee-eEECCCCEEc
Q 043870 354 WEDIGTIKSFFDANLSL-TDKP---PKFHF-----------YDPQKP-IFTSPRFLPPSKI-EKCRVQD-SIISHGCFLR 415 (526)
Q Consensus 354 w~dIgt~~d~~~An~~l-l~~~---~~~~~-----------~~~~~~-i~~~~~~~~~~~i-~~~~i~~-s~Ig~~~~i~ 415 (526)
-+.+.++++|..+|..+ +... ..... .+|.+. +.+.+.+++++.| +++.|.. +.||++|.|+
T Consensus 219 ~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~ 298 (481)
T PRK14358 219 AFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIG 298 (481)
T ss_pred EEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEEC
Confidence 34567788888888655 2211 11111 123222 2445556666767 4566654 7789999998
Q ss_pred c-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEccCC
Q 043870 416 E-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKD 493 (526)
Q Consensus 416 ~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~ 493 (526)
. |.|++|+||++|.|++++.|.+++ +|.+ +.||.++.|+ +++|+++++|++++.|.++.
T Consensus 299 ~~~~i~~svI~~~~~I~~~~~i~~~~-ig~~------------------~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~ 359 (481)
T PRK14358 299 AYSVVTDSVLHEGAVIKPHSVLEGAE-VGAG------------------SDVGPFARLRPGTVLGEGVHIGNFVETKNAR 359 (481)
T ss_pred CCCEEeeeEECCCCEEeecceecCCe-EeCc------------------eEECCccEEcCCcEECCCCEECCCEEECCce
Confidence 4 778999999999999999997754 5544 6788887776 57778888888766654321
Q ss_pred -----Cc-----CCccccCCCeEEccCc------------EEECCCCEECCCccC
Q 043870 494 -----GV-----EEAERPSDGFYIRSGI------------TVVLKNTTIKDGTII 526 (526)
Q Consensus 494 -----~v-----~~~~~~~~~~~I~~g~------------~~i~~~~~i~~gt~i 526 (526)
.+ .+..++++++.|+.++ ++||+++.||++++|
T Consensus 360 i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i 414 (481)
T PRK14358 360 LDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTL 414 (481)
T ss_pred ecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEE
Confidence 11 1234445555555443 366777777777653
|
|
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=106.94 Aligned_cols=83 Identities=13% Similarity=0.154 Sum_probs=45.9
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEEC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIG 484 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig 484 (526)
+.||+||.|.. +++||.++.||++|.|..++.++... +. -...|+.||++|.|. +|.|..+++||
T Consensus 130 a~IGeGt~I~~----~a~IG~~v~IG~nv~I~~g~~IgG~~-ep---------~~~~~ViIgDnv~IGa~a~I~~GV~IG 195 (269)
T TIGR00965 130 AYVDEGTMVDT----WATVGSCAQIGKNVHLSGGVGIGGVL-EP---------LQANPTIIEDNCFIGARSEIVEGVIVE 195 (269)
T ss_pred cEECCCCEECC----CcEECCCCEECCCCEEcCCcccCCCc-cc---------CCCCCeEECCCCEECCCCEEcCCCEEC
Confidence 44555555544 46666666666666666655554310 00 011346777777766 46666666666
Q ss_pred CCcEEccCCCcCCccccC
Q 043870 485 KNVIIANKDGVEEAERPS 502 (526)
Q Consensus 485 ~~~~i~~~~~v~~~~~~~ 502 (526)
++++|+..+.+....++.
T Consensus 196 ~gavIGaGavI~~~~~I~ 213 (269)
T TIGR00965 196 EGSVISMGVFIGQSTKIY 213 (269)
T ss_pred CCCEEeCCCEECCCCEEe
Confidence 666666655555444443
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.7e-10 Score=119.02 Aligned_cols=118 Identities=17% Similarity=0.322 Sum_probs=81.5
Q ss_pred CCCCCCCCeeec-CeeEe-eeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcce
Q 043870 388 TSPRFLPPSKIE-KCRVQ-DSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPV 464 (526)
Q Consensus 388 ~~~~~~~~~~i~-~~~i~-~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 464 (526)
+.+.+.+++.|. .+.+. ++.||++|.|+. |.|++++||++|+|+++|.|.++++..+ +
T Consensus 268 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~-------------------~ 328 (456)
T PRK14356 268 PRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDG-------------------C 328 (456)
T ss_pred CCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecc-------------------c
Confidence 344555555552 34443 388999999984 7789999999999999999977766655 7
Q ss_pred EECCCCEEe-ceEECCCCEECCCcEEccCCCcCC-----------ccccCCCeEEccCc------------EEECCCCEE
Q 043870 465 GIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEE-----------AERPSDGFYIRSGI------------TVVLKNTTI 520 (526)
Q Consensus 465 ~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~-----------~~~~~~~~~I~~g~------------~~i~~~~~i 520 (526)
.||+++.|. +++|+++|+||.++.+.++. +.. +..+++++.|+.++ ++||+++.|
T Consensus 329 ~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~-i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~i 407 (456)
T PRK14356 329 SVGPYARLRPGAVLEEGARVGNFVEMKKAV-LGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFI 407 (456)
T ss_pred EECCceEECCCCEECCCCEecCCceeeeeE-ecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEE
Confidence 899999997 68999999999888775532 222 23445555555442 245666666
Q ss_pred CCCcc
Q 043870 521 KDGTI 525 (526)
Q Consensus 521 ~~gt~ 525 (526)
|.+++
T Consensus 408 g~~~~ 412 (456)
T PRK14356 408 GSNTA 412 (456)
T ss_pred cCCCE
Confidence 65554
|
|
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-09 Score=87.05 Aligned_cols=65 Identities=31% Similarity=0.553 Sum_probs=50.7
Q ss_pred ECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCC
Q 043870 408 ISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKN 486 (526)
Q Consensus 408 Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 486 (526)
||++|.|+ .+.+.+++||++++|++++.|.+++++.. +.||+++.|.+++|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence 56666665 35566688888888888888888877766 78888888888888888888888
Q ss_pred cEEcc
Q 043870 487 VIIAN 491 (526)
Q Consensus 487 ~~i~~ 491 (526)
+.+.+
T Consensus 63 ~~i~~ 67 (79)
T cd03356 63 VRVVN 67 (79)
T ss_pred CEEcC
Confidence 88765
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-09 Score=99.82 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=39.2
Q ss_pred eEECCCcEECCCCEEec----eEEECCcccchhHHHHHHhhCCCcceEECCCCEEec-eEECCCCEECCCcEEccCCCcC
Q 043870 422 SIVGIRSRLEYGVELKD----TMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVE 496 (526)
Q Consensus 422 s~ig~~~~I~~~~~i~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~ 496 (526)
+.||+++.|++++.|.. .+.+|++ +.|+.++.|.. ++|+++|.||.++.|.+
T Consensus 43 v~IG~~~~I~~~~~i~~~~~~~v~Ig~~------------------~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~----- 99 (167)
T cd00710 43 IIIGANVNIQDGVVIHALEGYSVWIGKN------------------VSIAHGAIVHGPAYIGDNCFIGFRSVVFN----- 99 (167)
T ss_pred EEECCCCEECCCeEEEecCCCCEEECCC------------------ceECCCCEEeCCEEECCCCEECCCCEEEC-----
Confidence 55666666666666632 2333433 44555555543 56666666666665542
Q ss_pred CccccCCCeEEccCcE----EECCCCEECCCcc
Q 043870 497 EAERPSDGFYIRSGIT----VVLKNTTIKDGTI 525 (526)
Q Consensus 497 ~~~~~~~~~~I~~g~~----~i~~~~~i~~gt~ 525 (526)
..++++++|+.++. .|++++.|+++++
T Consensus 100 --~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~~~~ 130 (167)
T cd00710 100 --AKVGDNCVIGHNAVVDGVEIPPGRYVPAGAV 130 (167)
T ss_pred --CEECCCCEEcCCCEEeCCEeCCCCEECCCCE
Confidence 23444444444332 3345555555443
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=102.98 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=22.3
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
+.||++|.|. +|+|+.++.||++|.|+....+....++++++.|+.++++
T Consensus 133 ~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v 183 (197)
T cd03360 133 CVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVV 183 (197)
T ss_pred CEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence 3444444442 3444444444444444433333333445555555555443
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-09 Score=110.96 Aligned_cols=169 Identities=18% Similarity=0.171 Sum_probs=76.1
Q ss_pred cCChhh-HHHhchhhcCCC--CCcccCCCCCcccCCCCCCCCeee-cCeeEee-eEECCCCEEcc-eee-eceEECCCcE
Q 043870 357 IGTIKS-FFDANLSLTDKP--PKFHFYDPQKPIFTSPRFLPPSKI-EKCRVQD-SIISHGCFLRE-CSV-EHSIVGIRSR 429 (526)
Q Consensus 357 Igt~~d-~~~An~~ll~~~--~~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~-s~Ig~~~~i~~-~~v-~~s~ig~~~~ 429 (526)
+++|.. |.++...+..+. .....++|.+.+.+++.+++++.| +++.|.. +.||++|.|+. +.| .++.||++|.
T Consensus 77 ~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~ 156 (343)
T PRK00892 77 VKNPYLAFARLAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCR 156 (343)
T ss_pred eCCHHHHHHHHHHHhccccccccCCcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCE
Confidence 455543 444444443222 223456677766666666666666 3344432 45555555542 333 3455555555
Q ss_pred ECCCCEEeceEEECCcc-cchhHHHHH-----HhhCCC-------cceEECCCCEEe-ceEEC----CCCEECCCcEEcc
Q 043870 430 LEYGVELKDTMMMGADY-YQTEAEIAA-----LLAEGK-------VPVGIGRDTKIK-NCIID----KNAKIGKNVIIAN 491 (526)
Q Consensus 430 I~~~~~i~~~v~~~~~~-~~~~~~~~~-----~~~~~~-------~~~~Ig~~~~i~-~~iI~----~~~~Ig~~~~i~~ 491 (526)
|+++|+|.+++.+|++. +..++.+.. .-..|. ..+.||+++.|. +|.|+ .+++||+++.|.|
T Consensus 157 I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~ 236 (343)
T PRK00892 157 LHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDN 236 (343)
T ss_pred eCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEeC
Confidence 55555554444443330 000000000 000000 014445554444 23333 2344445555555
Q ss_pred CCCcCCccccCCCeEEccCc-----EEECCCCEECCCcc
Q 043870 492 KDGVEEAERPSDGFYIRSGI-----TVVLKNTTIKDGTI 525 (526)
Q Consensus 492 ~~~v~~~~~~~~~~~I~~g~-----~~i~~~~~i~~gt~ 525 (526)
...+..++++++++.|.+++ ++||+++.|+.++.
T Consensus 237 ~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~ 275 (343)
T PRK00892 237 LVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVG 275 (343)
T ss_pred CeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCE
Confidence 55555555666666665433 35566666666554
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=94.06 Aligned_cols=95 Identities=22% Similarity=0.372 Sum_probs=65.2
Q ss_pred eeEECCCCEEcc-eeee----ceEECCCcEECCCCEEece----EEECCcccchhHHHHHHhhCCCcceEECCCCEEece
Q 043870 405 DSIISHGCFLRE-CSVE----HSIVGIRSRLEYGVELKDT----MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNC 475 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v~----~s~ig~~~~I~~~~~i~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ 475 (526)
+..||++|.|++ +.|. .++||+++.|+++|+|.++ ++++++ +.|+.+|.|.++
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 78 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN------------------VTVGHGAVLHGC 78 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC------------------cEECCCcEEeee
Confidence 356677777764 4343 3689999999999999875 566665 788888888888
Q ss_pred EECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCc
Q 043870 476 IIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGT 524 (526)
Q Consensus 476 iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt 524 (526)
+|+.++.||.++.+.... +++++++|+.++++ .++..|++++
T Consensus 79 ~Ig~~~~Ig~~~~v~~~~------~ig~~~~ig~~~~v-~~~~~i~~~~ 120 (153)
T cd04645 79 TIGDNCLIGMGAIILDGA------VIGKGSIVAAGSLV-PPGKVIPPGS 120 (153)
T ss_pred EECCCCEECCCCEEcCCC------EECCCCEECCCCEE-CCCCEeCCCC
Confidence 888888888888886443 45555666555432 4555555444
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-08 Score=94.44 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=55.2
Q ss_pred eEECCCCEEcc-eeeec----eEECCCcEECCCCEEece----EEECCcccchhHHHHHHhhCCCcceEECCCCEEeceE
Q 043870 406 SIISHGCFLRE-CSVEH----SIVGIRSRLEYGVELKDT----MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCI 476 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v~~----s~ig~~~~I~~~~~i~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~i 476 (526)
+.||++|.|++ +.|.. ++||+++.|+++|.|... ++++++ +.|++++.|.+++
T Consensus 19 v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~~ 80 (154)
T cd04650 19 VVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY------------------VTIGHNAVVHGAK 80 (154)
T ss_pred EEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC------------------CEECCCcEEECcE
Confidence 55566666653 33433 588888888888888763 556654 7888888888888
Q ss_pred ECCCCEECCCcEEccCCCcCCccccCCCeEEccC
Q 043870 477 IDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSG 510 (526)
Q Consensus 477 I~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g 510 (526)
|+++|.||.++++.+.. +++++++|+.+
T Consensus 81 Ig~~~~Ig~~~~i~~~~------~Ig~~~~vg~~ 108 (154)
T cd04650 81 VGNYVIVGMGAILLNGA------KIGDHVIIGAG 108 (154)
T ss_pred ECCCCEEcCCCEEeCCC------EECCCCEECCC
Confidence 88888888888886554 34444444444
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-09 Score=105.09 Aligned_cols=101 Identities=21% Similarity=0.239 Sum_probs=65.0
Q ss_pred CCCCCCCeeecCeeEeeeEECCCCEEcceee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEEC
Q 043870 389 SPRFLPPSKIEKCRVQDSIISHGCFLRECSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIG 467 (526)
Q Consensus 389 ~~~~~~~~~i~~~~i~~s~Ig~~~~i~~~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig 467 (526)
..|+.|++.+.. ++.||++|+|..+.| .++.||+++.|+.+++|+.++++|++ +.|+
T Consensus 100 ~~rv~p~a~i~~----ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~n------------------v~I~ 157 (269)
T TIGR00965 100 GFRVVPGAAVRQ----GAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VHLS 157 (269)
T ss_pred CEEECCCcEECC----CcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCC------------------CEEc
Confidence 455666665533 467777777765444 34667777777777777777777665 6666
Q ss_pred CCCEEe---------ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCc
Q 043870 468 RDTKIK---------NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGI 511 (526)
Q Consensus 468 ~~~~i~---------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~ 511 (526)
.++.|. +++|++||.||.+++|.....+.+.+.++.|++|+.++
T Consensus 158 ~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~ 210 (269)
T TIGR00965 158 GGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQST 210 (269)
T ss_pred CCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCC
Confidence 666663 46778888888887777665555555555555554443
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-09 Score=115.97 Aligned_cols=119 Identities=14% Similarity=0.219 Sum_probs=76.5
Q ss_pred cCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcc
Q 043870 387 FTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVP 463 (526)
Q Consensus 387 ~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~ 463 (526)
.+.+.+++.+.| +.+.|. ++.||++|.|+. +.|.+|+||++|+|. ++.+.++++.++
T Consensus 253 ~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~------------------- 312 (448)
T PRK14357 253 HYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDD------------------- 312 (448)
T ss_pred ccceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCC-------------------
Confidence 334444445544 344444 478888888874 667778888888885 457777777666
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccC-----CCcC-----CccccCCCeEEccCc------------EEECCCCEE
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANK-----DGVE-----EAERPSDGFYIRSGI------------TVVLKNTTI 520 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~-----~~v~-----~~~~~~~~~~I~~g~------------~~i~~~~~i 520 (526)
+.||+++.|+ +++|+++++||+++.+.++ ..+. +...+++++.|+.|+ ++||+++.|
T Consensus 313 ~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~i 392 (448)
T PRK14357 313 VSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFI 392 (448)
T ss_pred cEECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEE
Confidence 6788888886 4888888888887765432 1111 234566677776543 356777777
Q ss_pred CCCcc
Q 043870 521 KDGTI 525 (526)
Q Consensus 521 ~~gt~ 525 (526)
|.+++
T Consensus 393 g~~~~ 397 (448)
T PRK14357 393 GSNSS 397 (448)
T ss_pred CCCCE
Confidence 76654
|
|
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5e-09 Score=96.69 Aligned_cols=95 Identities=26% Similarity=0.435 Sum_probs=55.9
Q ss_pred eeEECCCCEEccee-----eeceEECCCcEECCCCEEec----eEEECCcccchhHHHHHHhhCCCcceEECCCCEEece
Q 043870 405 DSIISHGCFLRECS-----VEHSIVGIRSRLEYGVELKD----TMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNC 475 (526)
Q Consensus 405 ~s~Ig~~~~i~~~~-----v~~s~ig~~~~I~~~~~i~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ 475 (526)
|..||+++.|.... .+...||.++.|.+||.|+. .+.+|++ +.||.++.|..|
T Consensus 29 dV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~------------------vtIGH~aivHGc 90 (176)
T COG0663 29 DVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDD------------------VTIGHGAVVHGC 90 (176)
T ss_pred eEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCC------------------cEEcCccEEEEe
Confidence 34444444444322 25567777777777777754 3455554 566666666677
Q ss_pred EECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCc
Q 043870 476 IIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGT 524 (526)
Q Consensus 476 iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt 524 (526)
.|+++|.||-|++|.|.+ ++|++++|+.|+.+ -++-.+++++
T Consensus 91 ~Ig~~~lIGmgA~vldga------~IG~~~iVgAgalV-~~~k~~p~~~ 132 (176)
T COG0663 91 TIGDNVLIGMGATVLDGA------VIGDGSIVGAGALV-TPGKEIPGGS 132 (176)
T ss_pred EECCCcEEecCceEeCCc------EECCCcEEccCCcc-cCCcCCCCCe
Confidence 777777777777777653 45556666655443 4444444443
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-09 Score=116.92 Aligned_cols=110 Identities=14% Similarity=0.113 Sum_probs=56.1
Q ss_pred eEeeeEECCCCEEcc-eee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCC--cceEECCCCEEe-ceE
Q 043870 402 RVQDSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGK--VPVGIGRDTKIK-NCI 476 (526)
Q Consensus 402 ~i~~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~Ig~~~~i~-~~i 476 (526)
.+.+++|+++|.|+. +.+ .+++||.++.|+.+++++++++..+.. +..+. ..+.||++|.|. +|+
T Consensus 319 ~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~----------i~~~~~i~~~~Ig~~~~IG~~~~ 388 (482)
T PRK14352 319 HGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTK----------VPHLTYVGDADIGEHSNIGASSV 388 (482)
T ss_pred eeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcE----------EccCceecccEECCCcEECCCcE
Confidence 344567777777764 445 367777777777777666655544321 11110 123455555554 233
Q ss_pred ECCCCE-ECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECC
Q 043870 477 IDKNAK-IGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKD 522 (526)
Q Consensus 477 I~~~~~-Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~ 522 (526)
+..... -+.+++|++...+.....+..++.|++++ +|+.+++|-.
T Consensus 389 i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~-~igags~v~~ 434 (482)
T PRK14352 389 FVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGA-YTGAGTVIRE 434 (482)
T ss_pred EeccccccCCCCeECCCcEECCCCEEeCCCEECCCc-EECCCCEEcC
Confidence 321000 00123333333333445677777888774 4477766543
|
|
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.3e-08 Score=100.80 Aligned_cols=217 Identities=18% Similarity=0.240 Sum_probs=129.7
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeC---CcchhHHHHHHHHHhcC-----------CcEEEEEec-cChhHHHH
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIG---GCYRLIDVPMSNCINSG-----------IKKIYILTQ-FNSQSLNR 155 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~---g~~pLI~~~l~~l~~~g-----------i~~I~Iv~~-~~~~~l~~ 155 (526)
.++.+||||||.||||. ...||+|+||+ |+ |++++.++++...+ .-.++|+++ +..+.+.+
T Consensus 14 ~~va~viLaGG~GTRLg---~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~ 89 (323)
T cd04193 14 GKVAVLLLAGGQGTRLG---FDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRK 89 (323)
T ss_pred CCEEEEEECCCcccccC---CCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHH
Confidence 36899999999999994 77899999998 68 99999999998742 124567777 77888999
Q ss_pred HhhhcccCCCC---cc-cCCCeEEEEeccccc----CcCCCccccChHHHHHHHHH--HhhhhccCCCCeEEEEcCCe-e
Q 043870 156 HISRTYNLGDG---MN-FGDGFVEVLAATQRQ----GESGKKWFQGTADAVRQFIW--MFEDAKHRNIENILILSGDH-L 224 (526)
Q Consensus 156 ~l~~~~~~~~~---~~-~~~~~v~vl~~~~~~----~~~~~~~~~Gt~~al~~~~~--~i~~~~~~~~e~~lil~gD~-l 224 (526)
++.+...|+-. +. |....+..+...... ...-...|.|.++-...... .+++...+..+.+.+.+.|. +
T Consensus 90 ~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L 169 (323)
T cd04193 90 FFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNIL 169 (323)
T ss_pred HHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccc
Confidence 99864334321 11 111112222110000 00001224677665554432 34444457889999999999 4
Q ss_pred cccCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEE-cCCCCeeeeeccCCccccccccccccccccchhhhcCCCc
Q 043870 225 YRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKI-DETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPY 303 (526)
Q Consensus 225 ~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~-d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~ 303 (526)
...--..++-.+.++++++.+-+.+..... ..-|.+.. |..-++.++.|-|..... ...-+..+ ..+
T Consensus 170 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-ekvG~l~~~~g~~~vvEysel~~~~~~-~~~~~g~l----------~f~ 237 (323)
T cd04193 170 VKVADPVFIGFCISKGADVGAKVVRKRYPT-EKVGVVVLVDGKPQVVEYSEISDELAE-KRDADGEL----------QYN 237 (323)
T ss_pred ccccCHHHhHHHHHcCCceEEEEEECCCCC-CceeEEEEECCeEEEEEeecCCHHHHh-ccCcCCcE----------ecc
Confidence 444445667777888999888776654322 23454443 433456777776554211 00000000 123
Q ss_pred eeeeeEEEEcHHHHHHHHHh
Q 043870 304 IASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 304 l~~~Giyif~~~~l~~ll~~ 323 (526)
..++.+.+|+-++|.++++.
T Consensus 238 ~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 238 AGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred cchHhhheeCHHHHHHHHhh
Confidence 34556778888888776543
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.5e-08 Score=97.01 Aligned_cols=213 Identities=15% Similarity=0.174 Sum_probs=128.6
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeC---CcchhHHHHHHHHHh--------cCCcEEEEEeccChhHHHHHhhhccc
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIG---GCYRLIDVPMSNCIN--------SGIKKIYILTQFNSQSLNRHISRTYN 162 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~---g~~pLI~~~l~~l~~--------~gi~~I~Iv~~~~~~~l~~~l~~~~~ 162 (526)
.+||||||.||||+ .+.||+|+||+ |+ |+|++.++++.. .+|..+++...+..+.+.+++.+..
T Consensus 2 a~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~- 76 (266)
T cd04180 2 AVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN- 76 (266)
T ss_pred EEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC-
Confidence 58999999999996 78899999999 99 999999999986 3477777778888888999998533
Q ss_pred CCCC--cccCCCeEEEEecccc--cCcCC--CccccChHHHHHHHH--HHhhhhccCCCCeEEEEcCCe-eccc-CHHHH
Q 043870 163 LGDG--MNFGDGFVEVLAATQR--QGESG--KKWFQGTADAVRQFI--WMFEDAKHRNIENILILSGDH-LYRM-DYMDF 232 (526)
Q Consensus 163 ~~~~--~~~~~~~v~vl~~~~~--~~~~~--~~~~~Gt~~al~~~~--~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~l 232 (526)
+..+ ..|..+.+..+..... ..+.. ...+-|.++.+.... ..++..+.+..+.+.+.+.|. +... |. .+
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP-~~ 155 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADP-LF 155 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCH-HH
Confidence 2111 1111111111111100 00001 122457766655433 234444446788999999999 4455 43 35
Q ss_pred HHHHHHcCCcEEEEEEEccCCcCCCceEEEEcCCCC--eeeeeccCCcccccc---cc-ccccccccchhhhcCCCceee
Q 043870 233 VQHHINSGGDISVCCLPVDESRASDFGLMKIDETGR--IRQFLEKPKGENLRS---MQ-IDTTALGLSAQEARNFPYIAS 306 (526)
Q Consensus 233 l~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d~~g~--V~~~~eKp~~~~~~~---~~-~~~~~l~~s~~~~~~~~~l~~ 306 (526)
+-.+...++++.+-+.+....+ ..=|++...++|+ +.++.+-|....... .. -+.+. ......+
T Consensus 156 lG~~~~~~~~~~~kvv~K~~~d-~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~---------~~~~~~n 225 (266)
T cd04180 156 IGIAIQNRKAINQKVVPKTRNE-ESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDIDD---------APFFLFN 225 (266)
T ss_pred HHHHHHcCCCEEEEEEECCCCC-CeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCCc---------eeeccce
Confidence 5566677788777666554422 2335555432354 677766554321000 00 00111 1456789
Q ss_pred eeEEEEcHHHHHHHHH
Q 043870 307 MGIYLFKTEVLLKVLR 322 (526)
Q Consensus 307 ~Giyif~~~~l~~ll~ 322 (526)
+...+|+-+.+.+.++
T Consensus 226 ~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 226 TNNLINFLVEFKDRVD 241 (266)
T ss_pred EEEEEEEHHHHHHHHH
Confidence 9999999998877664
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=98.95 E-value=6e-09 Score=96.01 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=28.2
Q ss_pred CCCCCcccCCCCCCCCeee-cCeeEee----eEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECC
Q 043870 380 YDPQKPIFTSPRFLPPSKI-EKCRVQD----SIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGA 444 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i-~~~~i~~----s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~ 444 (526)
+++.+.+...+.+++.+.| +++.+.. +.||++|.|++ |.| +...+.++.|+++|.|...+.+.+
T Consensus 9 i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I-~~~~~~~~~Ig~~~~Ig~~~~i~~ 78 (155)
T cd04745 9 VHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVI-HGFPGQDTVLEENGHIGHGAILHG 78 (155)
T ss_pred ECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEE-eecCCCCeEEcCCCEECCCcEEEC
Confidence 3444444444444444444 3344432 44555555543 222 222234455555555555444443
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-09 Score=113.89 Aligned_cols=70 Identities=14% Similarity=0.265 Sum_probs=50.1
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGK 485 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~ 485 (526)
+.|+++|.|++ +++||++|.|+++|.|.++++..+ +.|+.++.|.+|+|++++.||+
T Consensus 275 ~~I~~~~~I~~----~~~Ig~~~~I~~~~~I~~~~Ig~~-------------------~~I~~~~~i~~~~i~~~~~ig~ 331 (459)
T PRK14355 275 TTIYPGVCISG----DTRIGEGCTIEQGVVIKGCRIGDD-------------------VTVKAGSVLEDSVVGDDVAIGP 331 (459)
T ss_pred CEEeCCcEEeC----CCEECCCCEECCCCEEeCCEEcCC-------------------CEECCCeEEeCCEECCCCEECC
Confidence 45555555543 789999999999999988665555 7888888888888888877776
Q ss_pred CcEEccCCCcCCc
Q 043870 486 NVIIANKDGVEEA 498 (526)
Q Consensus 486 ~~~i~~~~~v~~~ 498 (526)
++++.....+.++
T Consensus 332 ~~~i~~~~~i~~~ 344 (459)
T PRK14355 332 MAHLRPGTELSAH 344 (459)
T ss_pred CCEECCCCEeCCC
Confidence 6666544333333
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-09 Score=115.71 Aligned_cols=94 Identities=14% Similarity=0.293 Sum_probs=80.4
Q ss_pred CCcccCCCCCCCCeee-cCeeEeeeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCC
Q 043870 383 QKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEG 460 (526)
Q Consensus 383 ~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~ 460 (526)
++.+..+..++.+++| .+++|.+|.||.||.|+ ++.|++|.||.+|+||+||+|.++++.++
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~---------------- 390 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD---------------- 390 (673)
T ss_pred hccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC----------------
Confidence 4445556667777777 57899999999999999 58889999999999999999999998887
Q ss_pred CcceEECCCCEEe-ceEECCCCEECCCcEEccCCCc
Q 043870 461 KVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGV 495 (526)
Q Consensus 461 ~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v 495 (526)
+.|++||.+. .|+|+-++.+|++-++.....+
T Consensus 391 ---v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 391 ---VKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred ---cEeCCCcccCCCcEEeeeeEeCCCccccccccc
Confidence 8999999996 5999999999999888766544
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.3e-09 Score=114.56 Aligned_cols=119 Identities=13% Similarity=0.213 Sum_probs=80.8
Q ss_pred CCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcce
Q 043870 388 TSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPV 464 (526)
Q Consensus 388 ~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 464 (526)
....+++++.| .+|.|. ++.||++|.|++ |.|.+|+||++|.|+++|.|.++++..+ +
T Consensus 264 ~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~-------------------~ 324 (456)
T PRK09451 264 GTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAA-------------------C 324 (456)
T ss_pred CcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCC-------------------c
Confidence 33445666777 456665 488999999984 7778999999999999999987654333 6
Q ss_pred EECCCCEEe-ceEECCCCEECCCcEEccC-----------CCcCCccccCCCeEEccCc------------EEECCCCEE
Q 043870 465 GIGRDTKIK-NCIIDKNAKIGKNVIIANK-----------DGVEEAERPSDGFYIRSGI------------TVVLKNTTI 520 (526)
Q Consensus 465 ~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~-----------~~v~~~~~~~~~~~I~~g~------------~~i~~~~~i 520 (526)
.||+++.|. ++.|+.+++||+++.|.++ ..+ +++.+|+++.|++++ ++||+++.|
T Consensus 325 ~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~i 403 (456)
T PRK09451 325 TIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYL-GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFV 403 (456)
T ss_pred EecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccc-cccEECCCCEEcCCeEEecccCcccCCCEECCCcEE
Confidence 777777776 5666666666666554322 111 344666777777664 357788888
Q ss_pred CCCccC
Q 043870 521 KDGTII 526 (526)
Q Consensus 521 ~~gt~i 526 (526)
|.+++|
T Consensus 404 g~~~~i 409 (456)
T PRK09451 404 GSDTQL 409 (456)
T ss_pred CCCCEE
Confidence 777653
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.7e-09 Score=98.84 Aligned_cols=146 Identities=18% Similarity=0.179 Sum_probs=70.5
Q ss_pred CCCCCcccCCCCCCCCeee-cCeeEee-eEECCCCEEcc-eee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHH
Q 043870 380 YDPQKPIFTSPRFLPPSKI-EKCRVQD-SIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAA 455 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i-~~~~i~~-s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~ 455 (526)
+++.+.+.+.+.+.+++.| +++.|.. +.|++++.|++ |.| .++.|+.++.|+++|.|...+.++.+..+... ...
T Consensus 4 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~-~~~ 82 (205)
T cd03352 4 IGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAP-DGG 82 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEe-cCC
Confidence 4455666666666666666 3444433 55556666653 344 45666666666666666665555532111000 000
Q ss_pred HhhC--CCcceEECCCCEEe-ceEEC----CCCEECCCcEEccCCCcCCccccCCCeEEccCc-----EEECCCCEECCC
Q 043870 456 LLAE--GKVPVGIGRDTKIK-NCIID----KNAKIGKNVIIANKDGVEEAERPSDGFYIRSGI-----TVVLKNTTIKDG 523 (526)
Q Consensus 456 ~~~~--~~~~~~Ig~~~~i~-~~iI~----~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~-----~~i~~~~~i~~g 523 (526)
...+ -...+.||+++.|. +|+|. .++.||+++.|.+...+....+++++++|..++ +.|++++.|+++
T Consensus 83 ~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~ 162 (205)
T cd03352 83 GWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQ 162 (205)
T ss_pred cEEEcCCcceEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCC
Confidence 0000 00125555555554 23332 233444444444443344444555555554332 356777777777
Q ss_pred ccC
Q 043870 524 TII 526 (526)
Q Consensus 524 t~i 526 (526)
++|
T Consensus 163 ~~v 165 (205)
T cd03352 163 VGI 165 (205)
T ss_pred CEE
Confidence 654
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.8e-09 Score=98.87 Aligned_cols=96 Identities=15% Similarity=0.222 Sum_probs=54.9
Q ss_pred EECCCCEEcceeeeceEECCCcEECCCCEEece---EEECCcccchhHHHHHHhhCCCcceEECCCCEEe-----ceEEC
Q 043870 407 IISHGCFLRECSVEHSIVGIRSRLEYGVELKDT---MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-----NCIID 478 (526)
Q Consensus 407 ~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~iI~ 478 (526)
.|++++.|.. +++||++|.|+++|.|.++ ++++.+ +.||++|.|. +|+|+
T Consensus 18 ~I~~~a~I~g----~V~IG~~~~I~~~avIrgd~~~i~Ig~~------------------~~Ig~~~~I~~~~~~~siIg 75 (196)
T PRK13627 18 FVHPSAVLIG----DVIVGAGVYIGPLASLRGDYGRLIVQAG------------------ANLQDGCIMHGYCDTDTIVG 75 (196)
T ss_pred EECCCCEEEC----ceEECCCCEECCCCEEecCCccEEECCC------------------CEECCCCEEeCCCCCCCEEC
Confidence 3444444433 5666777777777766553 455554 6667777664 35666
Q ss_pred CCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 479 KNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 479 ~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
+++.||.++++.++ .+.+...+|.++.|..|+ +||+++.|++|++|
T Consensus 76 ~~~~Ig~~a~i~g~-vIG~~v~IG~ga~V~~g~-~IG~~s~Vgags~V 121 (196)
T PRK13627 76 ENGHIGHGAILHGC-VIGRDALVGMNSVIMDGA-VIGEESIVAAMSFV 121 (196)
T ss_pred CCCEECCCcEEeeE-EECCCCEECcCCccCCCc-EECCCCEEcCCCEE
Confidence 66666666666543 244444444444444442 45666666666653
|
|
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.7e-09 Score=83.50 Aligned_cols=75 Identities=17% Similarity=0.316 Sum_probs=64.3
Q ss_pred CCCCeee-cCeeEeeeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCC
Q 043870 392 FLPPSKI-EKCRVQDSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRD 469 (526)
Q Consensus 392 ~~~~~~i-~~~~i~~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 469 (526)
+++.+.| +++.+.++.|+++|.|+ .+.+++++|++++.|+++|.|.+++++.+ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCC
Confidence 4566677 46777789999999997 47889999999999999999999887766 799999
Q ss_pred CEEec-eEECCCCEECC
Q 043870 470 TKIKN-CIIDKNAKIGK 485 (526)
Q Consensus 470 ~~i~~-~iI~~~~~Ig~ 485 (526)
+.|.+ ++|+++++|++
T Consensus 63 ~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 63 VRVVNLCIIGDDVVVED 79 (79)
T ss_pred CEEcCCeEECCCeEECc
Confidence 99988 89888888874
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=92.50 Aligned_cols=115 Identities=19% Similarity=0.243 Sum_probs=60.2
Q ss_pred CCCCcccCCCCCCCCeeec-CeeEe-eeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhh
Q 043870 381 DPQKPIFTSPRFLPPSKIE-KCRVQ-DSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLA 458 (526)
Q Consensus 381 ~~~~~i~~~~~~~~~~~i~-~~~i~-~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~ 458 (526)
+|.+.+...+.+++.+.|. .+.+. ++.|+++|+|.. ++.|+.+++|+++|.|...+.++.....
T Consensus 5 ~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~----~~~I~~~~~IG~~~~I~~~~~igg~~~~---------- 70 (139)
T cd03350 5 PPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDS----WATVGSCAQIGKNVHLSAGAVIGGVLEP---------- 70 (139)
T ss_pred CCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcC----CCEECCCCEECCCCEECCCCEECCcccc----------
Confidence 3444444444455544442 22222 355666666654 3444444444444444444444321100
Q ss_pred CCCcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE
Q 043870 459 EGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT 512 (526)
Q Consensus 459 ~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~ 512 (526)
.-..++.||+++.|. +++|..+++||++++|+....+.+..+++++ +.|.+
T Consensus 71 ~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~ 122 (139)
T cd03350 71 LQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEI 122 (139)
T ss_pred cccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc---CcccE
Confidence 001236777777776 4777777777777777766666666666665 55544
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=91.74 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=36.8
Q ss_pred ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe---------ceEECCCCEECCCcEEcc
Q 043870 421 HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK---------NCIIDKNAKIGKNVIIAN 491 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~---------~~iI~~~~~Ig~~~~i~~ 491 (526)
++.||+++.|+.++.|.+.+.+|++ +.|+.++.|. +++|+++|.||.+++|..
T Consensus 31 ~~~IG~~~~I~~~~~I~~~~~IG~~------------------~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~ 92 (139)
T cd03350 31 GAYVDEGTMVDSWATVGSCAQIGKN------------------VHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVE 92 (139)
T ss_pred CCEECCCeEEcCCCEECCCCEECCC------------------CEECCCCEECCcccccccCCeEECCCCEECCCCEECC
Confidence 4556666666666665555555554 5566666554 256666666666666654
Q ss_pred CCCcCCccccCCCeEE
Q 043870 492 KDGVEEAERPSDGFYI 507 (526)
Q Consensus 492 ~~~v~~~~~~~~~~~I 507 (526)
...+.+...++.++.|
T Consensus 93 gv~Ig~~~~Ig~g~~V 108 (139)
T cd03350 93 GVIVGKGAVLAAGVVL 108 (139)
T ss_pred CCEECCCCEEcCCCEE
Confidence 4433333333333333
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.7e-09 Score=83.59 Aligned_cols=66 Identities=23% Similarity=0.410 Sum_probs=50.5
Q ss_pred ECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCC
Q 043870 408 ISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKN 486 (526)
Q Consensus 408 Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 486 (526)
||++|.|++ +.+.+++||+++.|+++++|.++++..+ +.||+++.|.+++|+++++|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCC
Confidence 455555553 4456788888888888888888777665 78888888888888888888888
Q ss_pred cEEccC
Q 043870 487 VIIANK 492 (526)
Q Consensus 487 ~~i~~~ 492 (526)
+.+...
T Consensus 63 ~~i~~~ 68 (79)
T cd05787 63 CTIPPG 68 (79)
T ss_pred CEECCC
Confidence 777643
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-08 Score=94.65 Aligned_cols=96 Identities=14% Similarity=0.245 Sum_probs=77.3
Q ss_pred ccCCCCCcccCCCCCCCCeee-cCeeEee-----eEECCCCEEcc-eeee-----ceEECCCcEECCCCEEeceEEECCc
Q 043870 378 HFYDPQKPIFTSPRFLPPSKI-EKCRVQD-----SIISHGCFLRE-CSVE-----HSIVGIRSRLEYGVELKDTMMMGAD 445 (526)
Q Consensus 378 ~~~~~~~~i~~~~~~~~~~~i-~~~~i~~-----s~Ig~~~~i~~-~~v~-----~s~ig~~~~I~~~~~i~~~v~~~~~ 445 (526)
.+++|.+.+....++++.+.| +++.+.. +.||++|.|++ +.+. .+.||+++.|+.++.|.+.+++|++
T Consensus 9 ~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~ 88 (167)
T cd00710 9 AYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN 88 (167)
T ss_pred eEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC
Confidence 456667777666677777777 4555543 67999999985 4452 5889999999999999988888887
Q ss_pred ccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEcc
Q 043870 446 YYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIAN 491 (526)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 491 (526)
+.||.++.|.++.|+++|.||.++.|.+
T Consensus 89 ------------------~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~ 116 (167)
T cd00710 89 ------------------CFIGFRSVVFNAKVGDNCVIGHNAVVDG 116 (167)
T ss_pred ------------------CEECCCCEEECCEECCCCEEcCCCEEeC
Confidence 8999999999999999999999999953
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-08 Score=82.45 Aligned_cols=63 Identities=16% Similarity=0.315 Sum_probs=53.2
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGK 485 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~ 485 (526)
+.|++++.|++ +++||++|+|+++|.|++++++.+ +.|++++.|.+|++++++.|++
T Consensus 6 ~~I~~~~~i~~----~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 6 AKIGKTAKIGP----NVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred CEECCCCEECC----CCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 45666666655 789999999999999999888877 7999999999999999999999
Q ss_pred CcEEcc
Q 043870 486 NVIIAN 491 (526)
Q Consensus 486 ~~~i~~ 491 (526)
++.+.+
T Consensus 63 ~~~~~~ 68 (80)
T cd05824 63 WTRLEN 68 (80)
T ss_pred CcEEec
Confidence 988855
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-08 Score=92.06 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=13.2
Q ss_pred cccCCCeEEccCcE---EECCCCEECCCcc
Q 043870 499 ERPSDGFYIRSGIT---VVLKNTTIKDGTI 525 (526)
Q Consensus 499 ~~~~~~~~I~~g~~---~i~~~~~i~~gt~ 525 (526)
.+++++++|+.+++ .||++++||+|++
T Consensus 74 V~IG~~~~IG~ga~Igv~IG~~~vIGaGsv 103 (147)
T cd04649 74 ISIGKRCLLGANSGIGISLGDNCIVEAGLY 103 (147)
T ss_pred EEECCCCEECCCCEEeEEECCCCEECCCCE
Confidence 33444444443333 4566666666654
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=94.38 Aligned_cols=97 Identities=15% Similarity=0.234 Sum_probs=64.8
Q ss_pred cccCCCCCcccCCCCCCCCeee-cCeeEe----eeEECCCCEEcc-eeeec-----------eEECCCcEECCCCEEece
Q 043870 377 FHFYDPQKPIFTSPRFLPPSKI-EKCRVQ----DSIISHGCFLRE-CSVEH-----------SIVGIRSRLEYGVELKDT 439 (526)
Q Consensus 377 ~~~~~~~~~i~~~~~~~~~~~i-~~~~i~----~s~Ig~~~~i~~-~~v~~-----------s~ig~~~~I~~~~~i~~~ 439 (526)
..++++.+.+.+...+++++.| +++.+. .+.||++|.|++ +.|.+ +.||+++.|..++.|.+
T Consensus 5 ~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~- 83 (164)
T cd04646 5 GAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEA- 83 (164)
T ss_pred CcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEe-
Confidence 3456677777777778888877 566663 268899999975 55644 35777777777777766
Q ss_pred EEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEccC
Q 043870 440 MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 440 v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 492 (526)
+++|++ +.||.++.|. +++|+++|.||++++|...
T Consensus 84 ~~IGd~------------------~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~ 119 (164)
T cd04646 84 LKIGNN------------------NVFESKSFVGKNVIITDGCIIGAGCKLPSS 119 (164)
T ss_pred eEECCC------------------CEEeCCCEECCCCEECCCCEEeCCeEECCC
Confidence 445544 6677766664 4666666666666666543
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.2e-09 Score=111.65 Aligned_cols=153 Identities=15% Similarity=0.222 Sum_probs=89.1
Q ss_pred eeeecCChhhHHHhchhhc----CCC--CCcc--cCCCCCcc-cCC-------CCCCCCeee-cCeeEe-eeEECCCCEE
Q 043870 353 YWEDIGTIKSFFDANLSLT----DKP--PKFH--FYDPQKPI-FTS-------PRFLPPSKI-EKCRVQ-DSIISHGCFL 414 (526)
Q Consensus 353 ~w~dIgt~~d~~~An~~ll----~~~--~~~~--~~~~~~~i-~~~-------~~~~~~~~i-~~~~i~-~s~Ig~~~~i 414 (526)
+|+++++.+.+..++.... +.. .... +.++..++ .+. +.+++++.| .++.|. ++.||++|.|
T Consensus 210 ~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I 289 (450)
T PRK14360 210 MAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRI 289 (450)
T ss_pred eEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCCEE
Confidence 5666666666655543221 111 1122 34665553 222 223333444 234444 3777888888
Q ss_pred c-ceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEccC
Q 043870 415 R-ECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 415 ~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 492 (526)
+ .+.|.+++||++|+|+ ++++.++++..+ +.||.++.|+ +|+|+++|+||+++.|.++
T Consensus 290 ~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~-------------------~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~ 349 (450)
T PRK14360 290 GPGSLIENSQIGENVTVL-YSVVSDSQIGDG-------------------VKIGPYAHLRPEAQIGSNCRIGNFVEIKKS 349 (450)
T ss_pred CCCcEEEEEEEcCCCEEe-eeEEeeccccCC-------------------cEECCCCEECCCCEEeCceEECCCEEEecc
Confidence 6 4667778888888885 456665554443 7888888887 5888888888888877543
Q ss_pred CCcC-----------CccccCCCeEEccCc------------EEECCCCEECCCccC
Q 043870 493 DGVE-----------EAERPSDGFYIRSGI------------TVVLKNTTIKDGTII 526 (526)
Q Consensus 493 ~~v~-----------~~~~~~~~~~I~~g~------------~~i~~~~~i~~gt~i 526 (526)
.+. ++..+++++.|+.++ ++||+++.||++++|
T Consensus 350 -~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i 405 (450)
T PRK14360 350 -QLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVL 405 (450)
T ss_pred -ccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEE
Confidence 121 233455666665543 356777777776653
|
|
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=9e-07 Score=94.44 Aligned_cols=352 Identities=13% Similarity=0.172 Sum_probs=194.5
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeC-CcchhHHHHHHHHHhc----CCc-EEEEEeccC-hhHHHHHhhhccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIG-GCYRLIDVPMSNCINS----GIK-KIYILTQFN-SQSLNRHISRTYN 162 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~-g~~pLI~~~l~~l~~~----gi~-~I~Iv~~~~-~~~l~~~l~~~~~ 162 (526)
..++.+|.||||.||||+ ...||.++|+. |+ +++|..++++... |.. ..+|.+.++ .+...++|.+ |+
T Consensus 77 L~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~-sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k-~~ 151 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEK-YT 151 (469)
T ss_pred HhcEEEEEecCCcccccC---CCCCceeEEcCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHH-cC
Confidence 356889999999999999 67899999995 55 8999998888653 432 457777754 4467788874 43
Q ss_pred C-CCCcc-cCCCeEEEEec-ccc----cC-cCCCcc-ccChHHHHHHHH--HHhhhhccCCCCeEEEEcCCeecccCHHH
Q 043870 163 L-GDGMN-FGDGFVEVLAA-TQR----QG-ESGKKW-FQGTADAVRQFI--WMFEDAKHRNIENILILSGDHLYRMDYMD 231 (526)
Q Consensus 163 ~-~~~~~-~~~~~v~vl~~-~~~----~~-~~~~~~-~~Gt~~al~~~~--~~i~~~~~~~~e~~lil~gD~l~~~dl~~ 231 (526)
+ ...+. |....+.-+.. ... .+ .....| |.|.++-..... -.+++...+..+.+++.+.|.+...-=..
T Consensus 152 ~~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~ 231 (469)
T PLN02474 152 NSNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLK 231 (469)
T ss_pred CCccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHH
Confidence 2 11111 11111111111 000 00 011224 356655444332 22444444678999999999975443345
Q ss_pred HHHHHHHcCCcEEEEEEEccCCcCCCceEEE-EcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEE
Q 043870 232 FVQHHINSGGDISVCCLPVDESRASDFGLMK-IDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIY 310 (526)
Q Consensus 232 ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~-~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giy 310 (526)
++..|..+++++++=+.+...... +=|.+. .|..=+|.++.+-|...... .+ + ...-.+.+++.+
T Consensus 232 ~lg~~~~~~~e~~~ev~~Kt~~d~-kgG~l~~~dgk~~lvEysqvp~e~~~~-f~---~---------~~kf~~fNtnn~ 297 (469)
T PLN02474 232 ILNHLIQNKNEYCMEVTPKTLADV-KGGTLISYEGKVQLLEIAQVPDEHVNE-FK---S---------IEKFKIFNTNNL 297 (469)
T ss_pred HHHHHHhcCCceEEEEeecCCCCC-CccEEEEECCEEEEEEEecCCHHHHHh-hc---c---------cccceeeeeeeE
Confidence 777788889998887665443222 235444 23333578888877643110 00 0 013457899999
Q ss_pred EEcHHHHHHHHHhhCC--------CC-CC--hh--hchHhhhhcC-CcEEEEEe-cceeeecCChhhHHHhchhhcCCCC
Q 043870 311 LFKTEVLLKVLRWHYP--------EA-ND--FG--SEVIPMATKD-FNVQAYLF-NDYWEDIGTIKSFFDANLSLTDKPP 375 (526)
Q Consensus 311 if~~~~l~~ll~~~~~--------~~-~d--~~--~dil~~li~~-~~V~~~~~-~~~w~dIgt~~d~~~An~~ll~~~~ 375 (526)
+|+-+.+.++++.... .. +. +. +.++-++++- .+..++.. ...+..+.+..|+.-+...+.....
T Consensus 298 w~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~ 377 (469)
T PLN02474 298 WVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVD 377 (469)
T ss_pred EEEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhcc
Confidence 9999999877653110 00 00 00 0111122221 12222222 2347788888888877766544332
Q ss_pred CcccCCCCCcccCCC--CCCCCee-ec--CeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchh
Q 043870 376 KFHFYDPQKPIFTSP--RFLPPSK-IE--KCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTE 450 (526)
Q Consensus 376 ~~~~~~~~~~i~~~~--~~~~~~~-i~--~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~ 450 (526)
......+.....+.+ .++|..+ +. ..++. +--+.++ ..+-.|-..+..|.++++++.|++-+.
T Consensus 378 ~~l~~~~~~~~~~~p~IeL~~~f~~v~~f~~rf~----~iPsl~~---~d~LtV~Gdv~fG~~v~l~G~v~i~~~----- 445 (469)
T PLN02474 378 GFVIRNKARTNPSNPSIELGPEFKKVANFLSRFK----SIPSIVE---LDSLKVSGDVWFGSGIVLKGKVTITAK----- 445 (469)
T ss_pred CeEEecCcccCCCCCcEEECcccccHHhHHHhcC----CCCCccc---CCeEEEeeeeEECCCcEEEEEEEEEcC-----
Confidence 221111111111111 2222211 10 01111 0111111 246677778899999999999998873
Q ss_pred HHHHHHhhCCCcceEECCCCEEeceEECCCC
Q 043870 451 AEIAALLAEGKVPVGIGRDTKIKNCIIDKNA 481 (526)
Q Consensus 451 ~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~ 481 (526)
+..|..|-+|+.+.|++|..+.
T Consensus 446 ---------~~~~~~ip~g~~l~~~~~~~~~ 467 (469)
T PLN02474 446 ---------SGVKLEIPDGAVLENKDINGPE 467 (469)
T ss_pred ---------CCCeeecCCCcEecceeecccC
Confidence 4466889999999998887664
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=7e-09 Score=112.01 Aligned_cols=105 Identities=16% Similarity=0.298 Sum_probs=63.9
Q ss_pred CeeEe-eeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceE
Q 043870 400 KCRVQ-DSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCI 476 (526)
Q Consensus 400 ~~~i~-~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~i 476 (526)
++.|. ++.||++|.|++ +.|.+++||++|+|+ ++.+.++++..+ +.||+++.|. +++
T Consensus 277 ~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~-------------------~~Ig~~~~i~~~~~ 336 (458)
T PRK14354 277 GVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDN-------------------VTVGPFAHLRPGSV 336 (458)
T ss_pred CeEEecceEECCCCEECCCcEEeccEECCCCEEE-EEEEeCCEECCC-------------------cEECCceEecCCCE
Confidence 34443 377788888864 667778888888877 355655555444 6777777776 577
Q ss_pred ECCCCEECCCcEEccCCCcC-----------CccccCCCeEEccCc------------EEECCCCEECCCcc
Q 043870 477 IDKNAKIGKNVIIANKDGVE-----------EAERPSDGFYIRSGI------------TVVLKNTTIKDGTI 525 (526)
Q Consensus 477 I~~~~~Ig~~~~i~~~~~v~-----------~~~~~~~~~~I~~g~------------~~i~~~~~i~~gt~ 525 (526)
||.+|+||.++.|.++ .+. +..++++++.|+.++ ++|++++.||.+++
T Consensus 337 Ig~~~~i~~~~~i~~~-~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~ 407 (458)
T PRK14354 337 IGEEVKIGNFVEIKKS-TIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSN 407 (458)
T ss_pred EeCCcEECCceEEeee-EECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCE
Confidence 7777777766665432 121 233455555555442 34566666666654
|
|
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-08 Score=99.46 Aligned_cols=97 Identities=13% Similarity=0.218 Sum_probs=70.4
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEece---EEECCcccchhHHHHHHhhCCCcceEECCCCEEe---------
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDT---MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK--------- 473 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~--------- 473 (526)
+.|.+++.|.+ ++.||+++.|.++++|.+. +.+|.+ +.||+||.|.
T Consensus 66 ~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~------------------t~Ig~~~vI~~~~~~~~~i 123 (246)
T PLN02472 66 AYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFC------------------SNVQERCVLHAAWNSPTGL 123 (246)
T ss_pred CEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCC------------------CEECCCCEEeecCccccCC
Confidence 55566666654 6888888888888888764 777775 7888888884
Q ss_pred --ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 474 --NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 474 --~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
+++|+++|.||.+++|.++ .+....++|.++.|..|+ +|+++++|++|++|
T Consensus 124 ~~~tvIG~~v~IG~~s~L~~~-~Igd~v~IG~~svI~~ga-vIg~~~~Ig~gsvV 176 (246)
T PLN02472 124 PAETLIDRYVTIGAYSLLRSC-TIEPECIIGQHSILMEGS-LVETHSILEAGSVL 176 (246)
T ss_pred CCCcEECCCCEECCCcEECCe-EEcCCCEECCCCEECCCC-EECCCCEECCCCEE
Confidence 5888888888888888654 566666666666666653 45777777777653
|
|
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-08 Score=91.97 Aligned_cols=93 Identities=25% Similarity=0.324 Sum_probs=58.5
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceE------------EECCcccchhHHHHHHhhCCCcceEECCCCEEe
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTM------------MMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK 473 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v------------~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~ 473 (526)
+.|+++|+|.. .+..+.||++|.|+++|.|..+. ++|++ +.||+++.+.
T Consensus 28 ~~I~~~~~I~g-~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~------------------~~Ig~~~~i~ 88 (161)
T cd03359 28 TIIQSDVIIRG-DLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDY------------------VFIGENCVVN 88 (161)
T ss_pred eEEcCCCEEeC-CCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCc------------------cEECCCCEEE
Confidence 55555555532 12246888888888888888653 44443 6677777777
Q ss_pred ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCc
Q 043870 474 NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGT 524 (526)
Q Consensus 474 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt 524 (526)
+++|++++.||++++|+... ++++++.|++|+ +|.+++.|++.+
T Consensus 89 ~~~Ig~~v~Ig~~~~Ig~~~------~I~~~~~i~~g~-~V~~~~~i~~~~ 132 (161)
T cd03359 89 AAQIGSYVHIGKNCVIGRRC------IIKDCVKILDGT-VVPPDTVIPPYS 132 (161)
T ss_pred eeEEcCCcEECCCCEEcCCC------EECCCcEECCCC-EECCCCEeCCCC
Confidence 88888888888888887654 444445555443 224444444444
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-08 Score=101.59 Aligned_cols=86 Identities=24% Similarity=0.404 Sum_probs=52.7
Q ss_pred ceEECCCcEECCCCEEece---EEECCcccchhHHHHHHhhCCCcceEECCCCEEe-----------ceEECCCCEECCC
Q 043870 421 HSIVGIRSRLEYGVELKDT---MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-----------NCIIDKNAKIGKN 486 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----------~~iI~~~~~Ig~~ 486 (526)
++.||.+|.|.++|.|... +.+|++ +.|++||.|. +|+||++|.||.+
T Consensus 70 ~V~IG~~~~I~~gavI~g~~~~I~IG~~------------------~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~ 131 (269)
T PLN02296 70 DVQVGRGSSIWYGCVLRGDVNSISVGSG------------------TNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHS 131 (269)
T ss_pred ceEECCCCEECCCCEEEcCCCceEECCC------------------CEECCCCEEEeCCCcccCCCCCcEeCCCCEECCC
Confidence 5667777777777776644 366665 6677777663 4677777777777
Q ss_pred cEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 487 VIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 487 ~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
++|.++ .+.+++.++.++.|..| ++|+++++|++|++|
T Consensus 132 avI~g~-~Igd~v~IG~ga~I~~g-v~Ig~~a~IgagSvV 169 (269)
T PLN02296 132 AVLHGC-TVEDEAFVGMGATLLDG-VVVEKHAMVAAGALV 169 (269)
T ss_pred ceecCC-EECCCcEECCCcEECCC-eEECCCCEECCCCEE
Confidence 766443 34445555555555444 244666777666653
|
|
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-08 Score=96.15 Aligned_cols=97 Identities=9% Similarity=0.246 Sum_probs=66.6
Q ss_pred cccCCCCCcccCCCCCCCCeee-cCeeEee----eEECCCCEEcc-eee-----eceEECCCcEECCCCEEeceEEECCc
Q 043870 377 FHFYDPQKPIFTSPRFLPPSKI-EKCRVQD----SIISHGCFLRE-CSV-----EHSIVGIRSRLEYGVELKDTMMMGAD 445 (526)
Q Consensus 377 ~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~----s~Ig~~~~i~~-~~v-----~~s~ig~~~~I~~~~~i~~~v~~~~~ 445 (526)
..++++.+.+...+.+++.+.| .++.|.. ..||++|.|++ |.| .+|+||+++.|+++|.|.++++..+
T Consensus 14 ~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~- 92 (192)
T TIGR02287 14 EAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRN- 92 (192)
T ss_pred CcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCC-
Confidence 3466666666666667777777 4666642 46667777763 444 5688899999998888887665444
Q ss_pred ccchhHHHHHHhhCCCcceEECCCCEEec-eEECCCCEECCCcEEccC
Q 043870 446 YYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~ 492 (526)
+.||.++.|.+ ++|+++|.|++++.+...
T Consensus 93 ------------------~~IG~ga~I~~g~~IG~~s~Vgags~V~~~ 122 (192)
T TIGR02287 93 ------------------ALVGMNAVVMDGAVIGENSIVAASAFVKAG 122 (192)
T ss_pred ------------------CEECCCcccCCCeEECCCCEEcCCCEECCC
Confidence 67777777754 777777777777766543
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-08 Score=86.80 Aligned_cols=75 Identities=20% Similarity=0.364 Sum_probs=58.3
Q ss_pred EECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCC
Q 043870 407 IISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKN 486 (526)
Q Consensus 407 ~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 486 (526)
.|+++|.| ++++||.+|+|+ ++.|.+++++.+ +.||+++.|.+|+|+++++||++
T Consensus 3 ~i~~~~~i-----~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~~ 57 (104)
T cd04651 3 YIGRRGEV-----KNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGRN 57 (104)
T ss_pred eecCCCEE-----EeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECCC
Confidence 45555555 589999999999 999999998887 89999999999999999999999
Q ss_pred cEEccCCCcCCccccCCCeEE
Q 043870 487 VIIANKDGVEEAERPSDGFYI 507 (526)
Q Consensus 487 ~~i~~~~~v~~~~~~~~~~~I 507 (526)
+.+.++ .+.+..++++++.|
T Consensus 58 ~~i~~s-iig~~~~Ig~~~~v 77 (104)
T cd04651 58 AVIRRA-IIDKNVVIPDGVVI 77 (104)
T ss_pred CEEEeE-EECCCCEECCCCEE
Confidence 999753 23333333333333
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-08 Score=99.56 Aligned_cols=101 Identities=18% Similarity=0.206 Sum_probs=54.0
Q ss_pred ccCCCCCCCCeeecCeeEeeeEECCCCEEcceee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcce
Q 043870 386 IFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPV 464 (526)
Q Consensus 386 i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 464 (526)
....+++.|++++.. ++.|++|++|.++.+ .++.||++++|+.++.|++++.+|.+ +
T Consensus 100 ~~~~~rI~p~a~V~~----ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~n------------------v 157 (272)
T PRK11830 100 KEAGVRVVPGAVVRR----GAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------V 157 (272)
T ss_pred ccCCcEEcCCeEECC----CCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCC------------------c
Confidence 344555555555533 455666666654333 34556666666666666655555554 5
Q ss_pred EECCCCEEe---------ceEECCCCEECCCcEEccCCCcCCccccCCCeEEc
Q 043870 465 GIGRDTKIK---------NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIR 508 (526)
Q Consensus 465 ~Ig~~~~i~---------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~ 508 (526)
.|+.++.|. +++|++||.||.+++|.....+.+...++.+++|.
T Consensus 158 ~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~ 210 (272)
T PRK11830 158 HLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLG 210 (272)
T ss_pred EECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEc
Confidence 555555554 25666666666666665444344443333333333
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-08 Score=96.38 Aligned_cols=59 Identities=12% Similarity=0.275 Sum_probs=40.5
Q ss_pred cCCCCCcccCCCCCCCCeee-cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEec
Q 043870 379 FYDPQKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKD 438 (526)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~ 438 (526)
.+++++.+.. +.+++++.| .+|.+.++.||++|.|+. |.+.+++||.+|.|++++.|..
T Consensus 10 ~I~~~a~i~~-~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 10 TLHPTAELTE-SKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred eECCCcEEec-cEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 5566666643 567777777 457777777777777763 6667777777777777777754
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.2e-08 Score=92.70 Aligned_cols=19 Identities=21% Similarity=-0.094 Sum_probs=9.8
Q ss_pred eeeecCChhhHHHhchhhc
Q 043870 353 YWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 353 ~w~dIgt~~d~~~An~~ll 371 (526)
++..++.++...+....+.
T Consensus 62 ~iiai~~~~~~~~i~~~l~ 80 (201)
T TIGR03570 62 LVVAIGDNKLRRRLFEKLK 80 (201)
T ss_pred EEEEcCCHHHHHHHHHHHH
Confidence 4555665555555544443
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-08 Score=95.30 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=5.8
Q ss_pred eEECCCCEECCCcEE
Q 043870 475 CIIDKNAKIGKNVII 489 (526)
Q Consensus 475 ~iI~~~~~Ig~~~~i 489 (526)
|.|+++|+||.++++
T Consensus 154 ~~ig~~~~ig~~~~v 168 (201)
T TIGR03570 154 VVIGEGVFIGAGATI 168 (201)
T ss_pred cEECCCCEECCCCEE
Confidence 333333333333333
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-07 Score=89.41 Aligned_cols=219 Identities=20% Similarity=0.203 Sum_probs=138.3
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
++..|||+|-|.+.|.. .|-+.+++|+ |||.|+|+++.+++ |++|+|-+. ++.+.+.- ..|
T Consensus 2 ~~~iAiIpAR~gSKgI~------~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSsD--s~~Il~~A-~~y-------- 63 (228)
T COG1083 2 MKNIAIIPARGGSKGIK------NKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISSD--SEEILEEA-KKY-------- 63 (228)
T ss_pred cceEEEEeccCCCCcCC------ccchHHhCCc-chHHHHHHHHhcCCccceEEEcCC--cHHHHHHH-HHh--------
Confidence 45689999999999998 7999999999 99999999999998 577776654 33333332 233
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~~ 247 (526)
|.. +.++...... ++ ...|.+++.++...+. ...+.++++.+-. +...++.+.++.+.+.+.+-.+.+
T Consensus 64 gak-~~~~Rp~~LA----~D-~ast~~~~lh~le~~~----~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa 133 (228)
T COG1083 64 GAK-VFLKRPKELA----SD-RASTIDAALHALESFN----IDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSA 133 (228)
T ss_pred Ccc-ccccCChhhc----cC-chhHHHHHHHHHHHhc----cccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEE
Confidence 111 2122221111 00 0123345555555543 3445578888777 455579999999999888888888
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
.+.+... |.... +.+|.+..+.+.|..... .+. ....|..+..+|+++++.|.+ .
T Consensus 134 ~e~e~~p---~k~f~-~~~~~~~~~~~~~~~~~r-------------rQ~-Lpk~Y~~NgaiYi~~~~~l~e---~---- 188 (228)
T COG1083 134 VECEHHP---YKAFS-LNNGEVKPVNEDPDFETR-------------RQD-LPKAYRENGAIYINKKDALLE---N---- 188 (228)
T ss_pred eecccch---HHHHH-hcCCceeecccCCccccc-------------ccc-chhhhhhcCcEEEehHHHHhh---c----
Confidence 8776422 21111 234778877776642210 000 014577889999999998852 1
Q ss_pred CCChhhchHhhhhcCCcEEEEEec-ceeeecCChhhHHHhchhhcC
Q 043870 328 ANDFGSEVIPMATKDFNVQAYLFN-DYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 328 ~~d~~~dil~~li~~~~V~~~~~~-~~w~dIgt~~d~~~An~~ll~ 372 (526)
...|+ .+...|..+ ....||++..||..|+..+..
T Consensus 189 ~~~f~----------~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 189 DCFFI----------PNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred Cceec----------CCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 12221 223334443 457799999999999987643
|
|
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-08 Score=91.87 Aligned_cols=97 Identities=14% Similarity=0.233 Sum_probs=68.1
Q ss_pred cccCCCCCcccCCCCCCCCeee-cCeeEee----eEECCCCEEcceeee------ceEECCCcEECCCCEEeceEEECCc
Q 043870 377 FHFYDPQKPIFTSPRFLPPSKI-EKCRVQD----SIISHGCFLRECSVE------HSIVGIRSRLEYGVELKDTMMMGAD 445 (526)
Q Consensus 377 ~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~----s~Ig~~~~i~~~~v~------~s~ig~~~~I~~~~~i~~~v~~~~~ 445 (526)
..|++|++.+...+++++.+.| .++.+.. -.||++|.|.+.+|- .+.||+++.||.+|.|+.|. +|++
T Consensus 17 ~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~-Ig~~ 95 (176)
T COG0663 17 TAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCT-IGDN 95 (176)
T ss_pred ceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeE-ECCC
Confidence 4588888888888888888888 5666543 678999999865542 36778888888888777733 3333
Q ss_pred ccchhHHHHHHhhCCCcceEECCCCEEec-eEECCCCEECCCcEEccC
Q 043870 446 YYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~ 492 (526)
+.||-|+.|-| |.||++|.||+++.+...
T Consensus 96 ------------------~lIGmgA~vldga~IG~~~iVgAgalV~~~ 125 (176)
T COG0663 96 ------------------VLIGMGATVLDGAVIGDGSIVGAGALVTPG 125 (176)
T ss_pred ------------------cEEecCceEeCCcEECCCcEEccCCcccCC
Confidence 66666666665 666666666666666554
|
|
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-08 Score=96.52 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=79.2
Q ss_pred CCCCCcccCCCCCCCCeeec-CeeEe-eeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHh
Q 043870 380 YDPQKPIFTSPRFLPPSKIE-KCRVQ-DSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALL 457 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i~-~~~i~-~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~ 457 (526)
++|.+-+.+.+.++++++|. -|.|. ++.|++|+.|+. |++|-..+.||.+++|-...++|.. +..-..
T Consensus 6 IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~s----hvvv~G~T~IG~~n~I~~~A~iG~~------pQdlKy 75 (260)
T COG1043 6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKS----HVVVEGHTTIGRNNRIFPFASIGED------PQDLKY 75 (260)
T ss_pred cCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcc----cEEEeCCeEECCCCEEecccccCCC------Cccccc
Confidence 44444444444444444442 11111 355555555554 5555555566666666555555542 112223
Q ss_pred hCCCcceEECCCCEEec-eEECC-------CCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCc
Q 043870 458 AEGKVPVGIGRDTKIKN-CIIDK-------NAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGT 524 (526)
Q Consensus 458 ~~~~~~~~Ig~~~~i~~-~iI~~-------~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt 524 (526)
+.+..-+.||+|+.|+. +.|-. -++||++.-+.....+.-.+++|++|.+..+++ .|++.+.||..|
T Consensus 76 kge~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~s 155 (260)
T COG1043 76 KGEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLS 155 (260)
T ss_pred CCCceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcc
Confidence 33344488999999984 55522 346777777777777777888888888875544 677777777765
Q ss_pred c
Q 043870 525 I 525 (526)
Q Consensus 525 ~ 525 (526)
-
T Consensus 156 a 156 (260)
T COG1043 156 A 156 (260)
T ss_pred e
Confidence 3
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-08 Score=102.93 Aligned_cols=90 Identities=21% Similarity=0.304 Sum_probs=79.0
Q ss_pred CcccCCCCCCCCeee-cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCC
Q 043870 384 KPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGK 461 (526)
Q Consensus 384 ~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~ 461 (526)
+-...++.+++.+.| ++..|+.|+||.+|.|++ +.|.+|+|-+++.||+||.|.+|++...
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~g----------------- 391 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMG----------------- 391 (433)
T ss_pred eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceeccc-----------------
Confidence 345667788999999 588899999999999995 8899999999999999999999988776
Q ss_pred cceEECCCCEEeceEECCCCEECCCcEEccC
Q 043870 462 VPVGIGRDTKIKNCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 462 ~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~ 492 (526)
+.||++++++||+||.+-++.+..+..+.
T Consensus 392 --A~Ig~gs~L~nC~Ig~~yvVeak~~~~~e 420 (433)
T KOG1462|consen 392 --AQIGSGSKLKNCIIGPGYVVEAKGKHGGE 420 (433)
T ss_pred --ceecCCCeeeeeEecCCcEEccccccccc
Confidence 89999999999999999999976655543
|
|
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.7e-08 Score=97.62 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=12.7
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccC
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 492 (526)
+.||++|.|. +|+|.++++||++++|+..
T Consensus 161 v~IGd~v~IG~gsvI~~g~~Ig~~~~Igag 190 (231)
T TIGR03532 161 VVIEDNVLIGANAVILEGVRVGKGAVVAAG 190 (231)
T ss_pred eEECCCcEECCCCEEcCCCEECCCCEECCC
Confidence 4444444444 2444444444444444433
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=98.78 E-value=9e-08 Score=88.16 Aligned_cols=97 Identities=11% Similarity=0.154 Sum_probs=71.3
Q ss_pred CcccCCCCCcccCCCCCCCCeee-cCeeEee----eEECCCCEEcc-eeeec-----eEECCCcEECCCCEEeceEEECC
Q 043870 376 KFHFYDPQKPIFTSPRFLPPSKI-EKCRVQD----SIISHGCFLRE-CSVEH-----SIVGIRSRLEYGVELKDTMMMGA 444 (526)
Q Consensus 376 ~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~----s~Ig~~~~i~~-~~v~~-----s~ig~~~~I~~~~~i~~~v~~~~ 444 (526)
+..++++.+.+.+.+.+++.+.| +++.|.. ..||++|.|++ |.|.+ ++||+++.|+.++.+.++ ++|+
T Consensus 5 ~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~-~Ig~ 83 (154)
T cd04650 5 PKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGA-KVGN 83 (154)
T ss_pred CCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECc-EECC
Confidence 44577788888777888888888 5777765 48999999975 56643 789999999999998765 4554
Q ss_pred cccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEcc
Q 043870 445 DYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIAN 491 (526)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 491 (526)
+ +.||.++.+. +++|++++.|+.++.+..
T Consensus 84 ~------------------~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~ 113 (154)
T cd04650 84 Y------------------VIVGMGAILLNGAKIGDHVIIGAGAVVTP 113 (154)
T ss_pred C------------------CEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence 4 6777777775 467777777776666654
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.4e-07 Score=97.53 Aligned_cols=216 Identities=17% Similarity=0.180 Sum_probs=127.2
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeC---CcchhHHHHHHHHHhc--------------CCcEEEEEeccChhHH
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIG---GCYRLIDVPMSNCINS--------------GIKKIYILTQFNSQSL 153 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~---g~~pLI~~~l~~l~~~--------------gi~~I~Iv~~~~~~~l 153 (526)
.++.+||||||.||||+ ...||+|+||+ |+ ||++++++++... .+.-+++...+..+.+
T Consensus 105 gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 45899999999999997 67899999994 88 9999999999874 2444444455888888
Q ss_pred HHHhhhcccCCCC---cc-cCCCeEEEEecc-c----ccCcCCCccccChHHHHHHHHH--HhhhhccCCCCeEEEEcCC
Q 043870 154 NRHISRTYNLGDG---MN-FGDGFVEVLAAT-Q----RQGESGKKWFQGTADAVRQFIW--MFEDAKHRNIENILILSGD 222 (526)
Q Consensus 154 ~~~l~~~~~~~~~---~~-~~~~~v~vl~~~-~----~~~~~~~~~~~Gt~~al~~~~~--~i~~~~~~~~e~~lil~gD 222 (526)
.+++.+...|+-. +. |..+.+..+... . .+...-...|.|+++-...... .+++...+..+.+.+.+.|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 8998754323311 11 111222222110 0 0000001124577655544321 2444445788999999999
Q ss_pred ee-cccCHHHHHHHHHHcCC-cEEEEEEEccCCcCCCceEEEE-cCCCCeeeeeccCCccccccccccccccccchhhhc
Q 043870 223 HL-YRMDYMDFVQHHINSGG-DISVCCLPVDESRASDFGLMKI-DETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEAR 299 (526)
Q Consensus 223 ~l-~~~dl~~ll~~h~~~~a-d~ti~~~~~~~~~~~~~g~v~~-d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~ 299 (526)
.+ ...---.++-.+...++ ++.-.+.+... ...-|++.. |..-.|+.+.|-+...... ..-+++.+
T Consensus 261 N~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~~-~~~~~g~l-------- 329 (482)
T PTZ00339 261 NILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILNN-DELLTGEL-------- 329 (482)
T ss_pred cccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhhc-ccccCCee--------
Confidence 96 44444456666677777 65544443332 233466654 3333678888755432110 00001111
Q ss_pred CCCceeeeeEEEEcHHHHHHHHH
Q 043870 300 NFPYIASMGIYLFKTEVLLKVLR 322 (526)
Q Consensus 300 ~~~~l~~~Giyif~~~~l~~ll~ 322 (526)
.-...++..++|+-++|.++++
T Consensus 330 -~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 330 -AFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred -cccccceEEEEEEHHHHHHHhh
Confidence 2356788999999999987654
|
|
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.76 E-value=4e-08 Score=85.87 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=41.6
Q ss_pred eeEECCCCEEcc-eee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCE
Q 043870 405 DSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAK 482 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~ 482 (526)
++.||++|.|+. +.+ .+++||++|.|++++.+.+....+. .+.+++.+.+++|+++|.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~--------------------~~~~~~~~~~~~Ig~~~~ 75 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRS--------------------KIYRKWELKGTTVKRGAS 75 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCcc--------------------ccccccccCCcEECCCcE
Confidence 466777777764 333 3566666666666666655444332 234456667777777777
Q ss_pred ECCCcEEccC
Q 043870 483 IGKNVIIANK 492 (526)
Q Consensus 483 Ig~~~~i~~~ 492 (526)
||.++++.+.
T Consensus 76 Ig~~~~v~~~ 85 (119)
T cd03358 76 IGANATILPG 85 (119)
T ss_pred ECcCCEEeCC
Confidence 7777777544
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.5e-08 Score=106.82 Aligned_cols=111 Identities=22% Similarity=0.282 Sum_probs=69.2
Q ss_pred CCCCCCCeeecCeeEeeeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEEC
Q 043870 389 SPRFLPPSKIEKCRVQDSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIG 467 (526)
Q Consensus 389 ~~~~~~~~~i~~~~i~~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig 467 (526)
.+.++++|.|+++.+.++.||++|.|+ .+.|++|+||+++.|+.+ .| +.+.+|+..+=.+ +.||
T Consensus 282 ~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~-~~-~~~~i~~~~~i~d-------------~~Ig 346 (430)
T PRK14359 282 NSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNA-KL-NGVKAGHLSYLGD-------------CEID 346 (430)
T ss_pred eeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEccc-Ee-ccccccccccccC-------------CEEC
Confidence 345566677766777788999999998 466778888888866643 23 2333333211111 5667
Q ss_pred CCCEEec-eEECC-------CCEECCCcEEccCCCcCCccccCCCeEEccCcEEE
Q 043870 468 RDTKIKN-CIIDK-------NAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVV 514 (526)
Q Consensus 468 ~~~~i~~-~iI~~-------~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i 514 (526)
++|.|.. ++++. .+.||++|.|+....+....+++++++|++|+++.
T Consensus 347 ~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~ 401 (430)
T PRK14359 347 EGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVT 401 (430)
T ss_pred CCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEc
Confidence 7666663 33332 25555555555555555667888889998887763
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.4e-08 Score=91.65 Aligned_cols=6 Identities=33% Similarity=0.313 Sum_probs=2.7
Q ss_pred eecCCh
Q 043870 355 EDIGTI 360 (526)
Q Consensus 355 ~dIgt~ 360 (526)
.-++++
T Consensus 61 iai~~~ 66 (197)
T cd03360 61 VAIGDN 66 (197)
T ss_pred EecCCH
Confidence 344444
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.6e-08 Score=79.64 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=60.1
Q ss_pred EECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCccccC
Q 043870 423 IVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPS 502 (526)
Q Consensus 423 ~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~ 502 (526)
+||+++.|+++|.|.++++..+ +.||++++|.+|+|+++++|++++.|.++ .+.+..+++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~-------------------~~ig~~~~i~~s~i~~~~~i~~~~~i~~~-~i~~~~~i~ 60 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRN-------------------CKIGKNVVIDNSYIWDDVTIEDGCTIHHS-IVADGAVIG 60 (79)
T ss_pred CccCCCEECCCCEEeccEECCC-------------------CEECCCCEEeCcEEeCCCEECCCCEEeCc-EEcCCCEEC
Confidence 4789999999999987655444 89999999999999999999999999743 455666666
Q ss_pred CCeEEccCcEEECCCCEECC
Q 043870 503 DGFYIRSGITVVLKNTTIKD 522 (526)
Q Consensus 503 ~~~~I~~g~~~i~~~~~i~~ 522 (526)
.+++|+.+++ |++++.||+
T Consensus 61 ~~~~i~~~~~-v~~~~~ig~ 79 (79)
T cd05787 61 KGCTIPPGSL-ISFGVVIGD 79 (79)
T ss_pred CCCEECCCCE-EeCCcEeCc
Confidence 6666665533 366665553
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.3e-08 Score=88.97 Aligned_cols=15 Identities=7% Similarity=0.129 Sum_probs=7.0
Q ss_pred cEECCCCEEeceEEE
Q 043870 428 SRLEYGVELKDTMMM 442 (526)
Q Consensus 428 ~~I~~~~~i~~~v~~ 442 (526)
+.|+++|.|...+.+
T Consensus 61 ~~Ig~~~~I~~~~~i 75 (153)
T cd04645 61 TIIGDNVTVGHGAVL 75 (153)
T ss_pred eEEcCCcEECCCcEE
Confidence 445555555444443
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.3e-08 Score=82.69 Aligned_cols=66 Identities=12% Similarity=0.231 Sum_probs=48.0
Q ss_pred eEECCCCEEcc-eee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEE
Q 043870 406 SIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKI 483 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~I 483 (526)
++|+++|.|++ +.| .+++||.+|+|+. +|.++++++. +.|++++.|.+++|+.+++|
T Consensus 30 v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~i 88 (101)
T cd05635 30 VYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCNL 88 (101)
T ss_pred CEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCEE
Confidence 45555555543 333 2577777777763 5777777776 67888888888999999999
Q ss_pred CCCcEEccC
Q 043870 484 GKNVIIANK 492 (526)
Q Consensus 484 g~~~~i~~~ 492 (526)
|+++.+.|-
T Consensus 89 g~~~~~~~~ 97 (101)
T cd05635 89 GAGTNNSDL 97 (101)
T ss_pred CCCceeccc
Confidence 999888764
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.6e-08 Score=97.80 Aligned_cols=6 Identities=33% Similarity=1.044 Sum_probs=3.0
Q ss_pred eeeecC
Q 043870 353 YWEDIG 358 (526)
Q Consensus 353 ~w~dIg 358 (526)
-|..-|
T Consensus 133 aWtn~g 138 (341)
T TIGR03536 133 AWTNQG 138 (341)
T ss_pred eeecCC
Confidence 455544
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-07 Score=75.52 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=52.5
Q ss_pred eeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEec-eEECCCCE
Q 043870 405 DSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAK 482 (526)
Q Consensus 405 ~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~ 482 (526)
++.|+++|.|+ .+.|.+++|++++.|++++.|.++++..+ +.||+++.+.+ ++|+++++
T Consensus 17 ~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~~~~~~~~~ig~~~~ 77 (80)
T cd05824 17 NVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRWTRLENVTVLGDDVT 77 (80)
T ss_pred CCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCCcEEecCEEECCceE
Confidence 57788888886 47778999999999999999999887776 79999999987 78888877
Q ss_pred ECC
Q 043870 483 IGK 485 (526)
Q Consensus 483 Ig~ 485 (526)
||+
T Consensus 78 i~~ 80 (80)
T cd05824 78 IKD 80 (80)
T ss_pred ECC
Confidence 764
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-07 Score=81.66 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=43.6
Q ss_pred ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEEC----------CCCEECCCcEEc
Q 043870 421 HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIID----------KNAKIGKNVIIA 490 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~----------~~~~Ig~~~~i~ 490 (526)
+++||+++.|+.++.|.+.+.+|.+ +.|++++.+.++.+. .++.||+++.|+
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig 77 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDD------------------VFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIG 77 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCC------------------cEEcCCeEEecCCCCccccccccccCCcEECCCcEEC
Confidence 5677777777777777655555554 566666666543332 345566666666
Q ss_pred cCCCcCCccccCCCeEEccCcE
Q 043870 491 NKDGVEEAERPSDGFYIRSGIT 512 (526)
Q Consensus 491 ~~~~v~~~~~~~~~~~I~~g~~ 512 (526)
+...+.+..++++++.|+++.+
T Consensus 78 ~~~~v~~~~~ig~~~~i~~~~~ 99 (119)
T cd03358 78 ANATILPGVTIGEYALVGAGAV 99 (119)
T ss_pred cCCEEeCCcEECCCCEEccCCE
Confidence 6655555555555555555544
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-07 Score=82.14 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=29.4
Q ss_pred CcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcceee-eceEECCCcEECCCCEEe
Q 043870 384 KPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRECSV-EHSIVGIRSRLEYGVELK 437 (526)
Q Consensus 384 ~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~~~v-~~s~ig~~~~I~~~~~i~ 437 (526)
..+..++.+++++.| .++.+. ++.||++|.|.. .+ .+++||.+|.|+++|.|.
T Consensus 8 ~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~~a~Ighd~~IG~~~~I~ 63 (147)
T cd04649 8 DRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISSGVIVGKGSDVGGGASIM 63 (147)
T ss_pred CEECCCCEECCCcEECCCCEEccCCEECCCeEECC-cccCCEEECCCCEECCCCEEE
Confidence 334444555555555 223222 466666666641 22 356777777777777776
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-07 Score=92.02 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=46.2
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEEC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIG 484 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig 484 (526)
+.||+|++|... ...+||.+++||++|.|...+.+|+... ..|.....||+||.|. +|.|..+++||
T Consensus 148 a~IG~g~~I~h~--~givIG~~a~IGdnv~I~~~VtiGg~~~----------~~~~~~p~IGd~V~IGaga~Ilggv~IG 215 (273)
T PRK11132 148 AKIGRGIMLDHA--TGIVIGETAVIENDVSILQSVTLGGTGK----------TSGDRHPKIREGVMIGAGAKILGNIEVG 215 (273)
T ss_pred ceECCCeEEcCC--CCeEECCCCEECCCCEEcCCcEEecCcc----------cCCCcCCEECCCcEEcCCCEEcCCCEEC
Confidence 456666666531 1357777777777777777776664210 1122234666666665 46666666666
Q ss_pred CCcEEccCCCcCC
Q 043870 485 KNVIIANKDGVEE 497 (526)
Q Consensus 485 ~~~~i~~~~~v~~ 497 (526)
++++|+....|..
T Consensus 216 ~~a~IGAgSvV~~ 228 (273)
T PRK11132 216 RGAKIGAGSVVLQ 228 (273)
T ss_pred CCCEECCCCEECc
Confidence 6666666555443
|
|
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-07 Score=92.70 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=40.0
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEEC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIG 484 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig 484 (526)
+.||+|++|... ..++||++++||++|.|..++++|+.. -..+.+.+.||++|.|. +|.|..|++||
T Consensus 167 A~IG~gv~Idh~--tGVVIGe~a~IGdnv~I~~~VtLGg~g----------~~~~~r~piIGd~V~IGagA~Ilggi~IG 234 (294)
T PLN02694 167 AKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTG----------KACGDRHPKIGDGVLIGAGATILGNVKIG 234 (294)
T ss_pred ceecCCEEEeCC--CCeEECCCcEECCCCEEeecceeCCcc----------cccCCCccEECCCeEECCeeEECCCCEEC
Confidence 344444444321 146777777777777777777776520 01122334555555554 34444444444
Q ss_pred CCcEEccCCCcC
Q 043870 485 KNVIIANKDGVE 496 (526)
Q Consensus 485 ~~~~i~~~~~v~ 496 (526)
++++|+....|.
T Consensus 235 d~a~IGAgSVV~ 246 (294)
T PLN02694 235 EGAKIGAGSVVL 246 (294)
T ss_pred CCCEECCCCEEC
Confidence 444444444333
|
|
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.9e-07 Score=83.33 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=25.4
Q ss_pred eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCc
Q 043870 475 CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGT 524 (526)
Q Consensus 475 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt 524 (526)
++|++++.|++++++.++ .+....++++++.|+.+++ |++++.|++|+
T Consensus 73 v~Ig~~~~Ig~~~~i~~~-~Ig~~v~Ig~~~~Ig~~~~-I~~~~~i~~g~ 120 (161)
T cd03359 73 LHIGDYVFIGENCVVNAA-QIGSYVHIGKNCVIGRRCI-IKDCVKILDGT 120 (161)
T ss_pred eEECCccEECCCCEEEee-EEcCCcEECCCCEEcCCCE-ECCCcEECCCC
Confidence 467777777777776543 3444445555555554432 24444444443
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-07 Score=97.31 Aligned_cols=92 Identities=16% Similarity=0.273 Sum_probs=74.2
Q ss_pred ccCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHH
Q 043870 378 HFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAAL 456 (526)
Q Consensus 378 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~ 456 (526)
.++.+.+.+ ..+.++++|.|.+ .+.+|+||++|.|+. |.|++|+|+++|+|+++|.|.++++..+
T Consensus 283 ~~i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~------------ 348 (380)
T PRK05293 283 QYIAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN------------ 348 (380)
T ss_pred CEECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC------------
Confidence 345566655 3445777777743 466799999999984 7889999999999999999999777665
Q ss_pred hhCCCcceEECCCCEEec-----eEECCCCEECCCcEEc
Q 043870 457 LAEGKVPVGIGRDTKIKN-----CIIDKNAKIGKNVIIA 490 (526)
Q Consensus 457 ~~~~~~~~~Ig~~~~i~~-----~iI~~~~~Ig~~~~i~ 490 (526)
+.||+++.|.+ .+||++++|+++++|+
T Consensus 349 -------~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 349 -------AVIGDGVIIGGGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred -------CEECCCCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence 89999999987 8889999998888774
|
|
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.7e-07 Score=89.68 Aligned_cols=26 Identities=4% Similarity=0.081 Sum_probs=11.4
Q ss_pred ccCCCeEEccCcE---EECCCCEECCCcc
Q 043870 500 RPSDGFYIRSGIT---VVLKNTTIKDGTI 525 (526)
Q Consensus 500 ~~~~~~~I~~g~~---~i~~~~~i~~gt~ 525 (526)
.+|++++||.|+. .||++|+||+|++
T Consensus 227 ~IGe~~~IGagA~IGI~IGd~~VVGAGaV 255 (319)
T TIGR03535 227 SIGERCLLGANSGLGISLGDDCVVEAGLY 255 (319)
T ss_pred EECCCcEECCCCEECeEECCCCEECCCCE
Confidence 3344444443333 3455555555543
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.9e-07 Score=84.19 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=23.9
Q ss_pred eEECCCCEEcc-eee---eceEECCCcEECCCCEEec--eEEECCc
Q 043870 406 SIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKD--TMMMGAD 445 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~--~v~~~~~ 445 (526)
+.||++|.|.+ +.+ .+..||+++.|+++|.|.+ .+.+|++
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~ 97 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAH 97 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCC
Confidence 44555555543 233 2477888888888888763 3445543
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-06 Score=83.58 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=52.3
Q ss_pred eEECCCCEEcc-eee---eceEECCCcEECCCCEEeceEE----ECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceE
Q 043870 406 SIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKDTMM----MGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCI 476 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~~v~----~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~i 476 (526)
..||++|.|++ +.+ ..++||++|.|++++.|.+... -..+|-..+...... ..-..|+.||+++.|. +++
T Consensus 66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~-~~~~~~v~Ig~~~~ig~~~~ 144 (192)
T PRK09677 66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMR-TLESSAVVIGQRVWIGENVT 144 (192)
T ss_pred EEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhc-ccccCCeEEcCCcEECCCCE
Confidence 66788888864 444 3578888888888888865321 000000000000000 0012357888888885 577
Q ss_pred ECCCCEECCCcEEccCCCcCC
Q 043870 477 IDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 477 I~~~~~Ig~~~~i~~~~~v~~ 497 (526)
|..+++||++|+|+..+.+..
T Consensus 145 i~~g~~Ig~~~~Iga~s~v~~ 165 (192)
T PRK09677 145 ILPGVSIGNGCIVGANSVVTK 165 (192)
T ss_pred EcCCCEECCCCEECCCCEECc
Confidence 777777777777777665554
|
|
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.6e-06 Score=74.04 Aligned_cols=50 Identities=18% Similarity=0.379 Sum_probs=26.0
Q ss_pred ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEc
Q 043870 421 HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIA 490 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~ 490 (526)
.+.||+++.|+++|.|.+.+.+|++ +.||. .|.+|+|..++.|+.++.|.
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~------------------~~Ig~--~i~~svi~~~~~i~~~~~lg 78 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPT------------------CKIGG--EVEDSIIEGYSNKQHDGFLG 78 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCC------------------CEECC--EECccEEcCCCEecCcCEEe
Confidence 4556666666666655554444443 44442 34455555555555555543
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=83.57 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=64.1
Q ss_pred ccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee---eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCC
Q 043870 386 IFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGK 461 (526)
Q Consensus 386 i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~ 461 (526)
+..++.+.||+.+... .+..||++|+|+. |.+ .++.||++|.|+++|.|... +.... ......-..-.
T Consensus 58 ig~~~~I~~~~~~~~g--~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~---~h~~~---~~~r~~g~~~~ 129 (203)
T PRK09527 58 VGENAWVEPPVYFSYG--SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT---GHPVH---HELRKNGEMYS 129 (203)
T ss_pred cCCCcEEcCCEEEeeC--CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeC---CCCCC---hhhcccccccc
Confidence 3445566777766310 2466777777763 444 34788888888888888632 11100 00000000012
Q ss_pred cceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCC
Q 043870 462 VPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 462 ~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~ 497 (526)
.|+.||++|.|. +|+|..+++||++++|+..+.+..
T Consensus 130 ~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~k 166 (203)
T PRK09527 130 FPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTK 166 (203)
T ss_pred CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 468999999997 588888888888888888776655
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-06 Score=69.51 Aligned_cols=70 Identities=21% Similarity=0.347 Sum_probs=39.2
Q ss_pred EECCCCEEcc-eeee-ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEec-eEECCCCEE
Q 043870 407 IISHGCFLRE-CSVE-HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKI 483 (526)
Q Consensus 407 ~Ig~~~~i~~-~~v~-~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~I 483 (526)
.|+++|.|++ +.|. +++||+++.|+++|.|.++.... ...|+.||+++.|.. |+|..+++|
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~----------------~~~~~~ig~~~~v~~~~~i~~~~~i 65 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN----------------EKNPTIIGDNVEIGANAVIHGGVKI 65 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC----------------ccCCcEECCCcEECCCCEEeCCCEE
Confidence 3555555553 3332 47777777777777776653221 112356666666653 666666666
Q ss_pred CCCcEEccC
Q 043870 484 GKNVIIANK 492 (526)
Q Consensus 484 g~~~~i~~~ 492 (526)
|++++|+..
T Consensus 66 g~~~~i~~~ 74 (78)
T cd00208 66 GDNAVIGAG 74 (78)
T ss_pred CCCCEECcC
Confidence 666666543
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.4e-07 Score=82.10 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=11.3
Q ss_pred eEECCCcEECCCCEEeceEEECC
Q 043870 422 SIVGIRSRLEYGVELKDTMMMGA 444 (526)
Q Consensus 422 s~ig~~~~I~~~~~i~~~v~~~~ 444 (526)
++||+++.||++|.|..++.++.
T Consensus 82 ~~Ig~~~~IG~~~~I~~~v~ig~ 104 (162)
T TIGR01172 82 VVIGETAVIGDDVTIYHGVTLGG 104 (162)
T ss_pred EEECCCCEECCCCEEcCCCEECC
Confidence 44445555555555544444443
|
Cysteine biosynthesis |
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-06 Score=86.20 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=8.1
Q ss_pred ceEECCCcEECCCCEE
Q 043870 421 HSIVGIRSRLEYGVEL 436 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i 436 (526)
.++||.+|.||.+|.|
T Consensus 224 GavIGhds~IG~gasI 239 (341)
T TIGR03536 224 GVMVGKGSDLGGGCST 239 (341)
T ss_pred CCEECCCCEECCCCEE
Confidence 3445555555555555
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=87.88 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=49.6
Q ss_pred ccCCCCCCCCeeecCeeEeeeEECCCCEEcceeeeceEECCCcEEC---CCCEEeceEEECCcccchhHHHHHHhhCCCc
Q 043870 386 IFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLE---YGVELKDTMMMGADYYQTEAEIAALLAEGKV 462 (526)
Q Consensus 386 i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~---~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~ 462 (526)
|.+.++|+++++|+.. .++.||++|.|++ ++.|+.++.+| .++.. ...++|++
T Consensus 163 I~p~A~IG~gv~Idh~--tGVVIGe~a~IGd----nv~I~~~VtLGg~g~~~~~-r~piIGd~----------------- 218 (294)
T PLN02694 163 IHPAAKIGKGILFDHA--TGVVIGETAVIGN----NVSILHHVTLGGTGKACGD-RHPKIGDG----------------- 218 (294)
T ss_pred eCCcceecCCEEEeCC--CCeEECCCcEECC----CCEEeecceeCCcccccCC-CccEECCC-----------------
Confidence 4555556666555331 1355555555554 33333333332 11222 23556665
Q ss_pred ceEECCCCEE-eceEECCCCEECCCcEEccC
Q 043870 463 PVGIGRDTKI-KNCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 463 ~~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~~ 492 (526)
+.||.|++| .++.||++|+||+++++...
T Consensus 219 -V~IGagA~Ilggi~IGd~a~IGAgSVV~kd 248 (294)
T PLN02694 219 -VLIGAGATILGNVKIGEGAKIGAGSVVLID 248 (294)
T ss_pred -eEECCeeEECCCCEECCCCEECCCCEECCc
Confidence 899999999 57999999999999999864
|
|
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-06 Score=81.09 Aligned_cols=100 Identities=13% Similarity=0.193 Sum_probs=56.8
Q ss_pred cCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee---eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCc
Q 043870 387 FTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKV 462 (526)
Q Consensus 387 ~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~ 462 (526)
...+.+.+++.|..- .+..||++|.|++ +.+ ..++||++|.|+.+|.|.... .++.... ...-..
T Consensus 55 G~~~~I~~~a~i~~~--~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~---h~~~~~~------~~~~~~ 123 (182)
T PRK10502 55 GKGVVIRPSVRITYP--WKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGS---HDYSDPH------FDLNTA 123 (182)
T ss_pred CCCcEEcCCEEEecC--CeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCC---CCCcCCC------cccccC
Confidence 334444455444210 1245666666654 223 357788888888777775321 1110000 000124
Q ss_pred ceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCC
Q 043870 463 PVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 463 ~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~ 497 (526)
|+.||++|.|. +|+|..+++||++++|+....+.+
T Consensus 124 ~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~ 159 (182)
T PRK10502 124 PIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFK 159 (182)
T ss_pred CEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEec
Confidence 58889998887 588888888888888876655443
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=9e-07 Score=87.19 Aligned_cols=61 Identities=23% Similarity=0.388 Sum_probs=49.1
Q ss_pred cCCCCCcccCCCCCCCCeee-------cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEece
Q 043870 379 FYDPQKPIFTSPRFLPPSKI-------EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDT 439 (526)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~i-------~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~ 439 (526)
+++|++++.+++.++|++.| +++|+.+|+|-++|.|.+ +.|-||+||++|.||.+++++..
T Consensus 290 yIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~ 358 (407)
T KOG1460|consen 290 YIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGI 358 (407)
T ss_pred EEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeeccc
Confidence 55666666666666666655 478889999999999985 77899999999999999999764
|
|
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.7e-07 Score=82.01 Aligned_cols=28 Identities=36% Similarity=0.525 Sum_probs=16.7
Q ss_pred eEECCCCEEec-eEECCCCEECCCcEEcc
Q 043870 464 VGIGRDTKIKN-CIIDKNAKIGKNVIIAN 491 (526)
Q Consensus 464 ~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~ 491 (526)
+.||.+++|.. ++||++|.||+++++..
T Consensus 120 v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~ 148 (162)
T TIGR01172 120 VMIGAGAKVLGNIEVGENAKIGANSVVLK 148 (162)
T ss_pred cEEcCCCEEECCcEECCCCEECCCCEECC
Confidence 55666665543 56666666666666654
|
Cysteine biosynthesis |
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-06 Score=93.62 Aligned_cols=96 Identities=11% Similarity=0.153 Sum_probs=66.6
Q ss_pred CCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECC----------
Q 043870 410 HGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDK---------- 479 (526)
Q Consensus 410 ~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~---------- 479 (526)
+.+.+..+.+++|.||++|.| ++|.|+++++.++ +.||++|.|.+|+|..
T Consensus 297 ~~a~~~~~~~~~~~ig~~~~i-~~~~i~~svi~~~-------------------~~Ig~~~~i~~svi~~~~~~p~~~~~ 356 (429)
T PRK02862 297 PPSKLLDATITESIIAEGCII-KNCSIHHSVLGIR-------------------SRIESGCTIEDTLVMGADFYESSEER 356 (429)
T ss_pred CCccccccEEEeCEECCCCEE-CCcEEEEEEEeCC-------------------cEECCCCEEEeeEEecCccccccccc
Confidence 334444556667888888888 7888888766655 7888888888888854
Q ss_pred ---------CCEECCCcEEccCCCcCCccccCCCeEEccCc-----------EEECCC-CEECCCccC
Q 043870 480 ---------NAKIGKNVIIANKDGVEEAERPSDGFYIRSGI-----------TVVLKN-TTIKDGTII 526 (526)
Q Consensus 480 ---------~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~-----------~~i~~~-~~i~~gt~i 526 (526)
++.||++|+|.++ .+....++++++.|..+. .+|+.+ ++|+.|+++
T Consensus 357 ~~~~~~~~~~~~Ig~~~~i~~~-ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (429)
T PRK02862 357 EELRKEGKPPLGIGEGTTIKRA-IIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVI 423 (429)
T ss_pred ccccccCCcccEECCCCEEEEE-EECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCC
Confidence 6888888888765 466677777777775333 144555 556665543
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-06 Score=88.13 Aligned_cols=27 Identities=41% Similarity=0.491 Sum_probs=13.5
Q ss_pred eEECCCCEE-eceEECCCCEECCCcEEc
Q 043870 464 VGIGRDTKI-KNCIIDKNAKIGKNVIIA 490 (526)
Q Consensus 464 ~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 490 (526)
+.||.|++| .++.||++|.||+++++.
T Consensus 285 V~IGagA~IlggV~IGdga~IGAgSVV~ 312 (360)
T PLN02357 285 VLIGAGTCILGNITIGEGAKIGAGSVVL 312 (360)
T ss_pred eEECCceEEECCeEECCCCEECCCCEEC
Confidence 444444444 245555555555555554
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-06 Score=67.97 Aligned_cols=51 Identities=25% Similarity=0.481 Sum_probs=35.7
Q ss_pred eEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEec---------eEECCCCEECCCcEEc
Q 043870 422 SIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN---------CIIDKNAKIGKNVIIA 490 (526)
Q Consensus 422 s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~---------~iI~~~~~Ig~~~~i~ 490 (526)
+.||+++.|++++.|.+.+.+|++ +.|++++.|.+ ++|+++|.|+.++++.
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~ 60 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDN------------------VNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCC------------------CEECCCCEEEeccCCCccCCcEECCCcEECCCCEEe
Confidence 467888888888888776777765 77888887775 4556666666555554
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-06 Score=93.80 Aligned_cols=24 Identities=8% Similarity=0.299 Sum_probs=10.5
Q ss_pred CCCCeeecCeeEeeeEECCCCEEc
Q 043870 392 FLPPSKIEKCRVQDSIISHGCFLR 415 (526)
Q Consensus 392 ~~~~~~i~~~~i~~s~Ig~~~~i~ 415 (526)
+.++|.|.++.|.+|+|+++|.|+
T Consensus 318 I~~~~~I~~~~I~~svI~~~~~Ig 341 (436)
T PLN02241 318 ISHGCFLRECKIEHSVVGLRSRIG 341 (436)
T ss_pred EcCCcEEcCeEEEeeEEcCCCEEC
Confidence 444444443444444444444444
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-06 Score=89.73 Aligned_cols=34 Identities=6% Similarity=0.123 Sum_probs=20.0
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGA 444 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~ 444 (526)
+.|+++|.|. +++|+..+.||++|+|+++++.++
T Consensus 255 ~~i~~~~~i~-----~~~i~~~~~Ig~~~~I~~~~i~~~ 288 (353)
T TIGR01208 255 VVVGEGAKIV-----NSVIRGPAVIGEDCIIENSYIGPY 288 (353)
T ss_pred EEECCCCEEe-----CCEEECCcEECCCCEEcCcEECCC
Confidence 5555555552 555656666666666666655544
|
Alternate name: dTDP-D-glucose synthase |
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=81.17 Aligned_cols=52 Identities=19% Similarity=0.371 Sum_probs=29.9
Q ss_pred eEECCCCEECCCcEEccCCCcC--CccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 475 CIIDKNAKIGKNVIIANKDGVE--EAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 475 ~iI~~~~~Ig~~~~i~~~~~v~--~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
++||+||.|-.+|+|++...-. .+.+++++++|++|+. .||+|+.||+|+||
T Consensus 94 a~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVV 152 (194)
T COG1045 94 AVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVV 152 (194)
T ss_pred eEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEECCCceE
Confidence 3444555555555555443322 3556666677766654 56777777777764
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.6e-06 Score=87.01 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=15.8
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccCCCc
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGV 495 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v 495 (526)
+.||+||.|. ++.|..+++||++++|+....|
T Consensus 258 p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV 290 (355)
T PLN02739 258 PKIGDGALLGACVTILGNISIGAGAMVAAGSLV 290 (355)
T ss_pred cEECCCCEEcCCCEEeCCeEECCCCEECCCCEE
Confidence 4555555554 3444444555555555444433
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.2e-06 Score=79.82 Aligned_cols=69 Identities=23% Similarity=0.330 Sum_probs=40.4
Q ss_pred ceEECCCcEECCCCEEec--eEEECCcccchhHHHHHHhhCCCcceEECCCCEEec-------------------eEECC
Q 043870 421 HSIVGIRSRLEYGVELKD--TMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-------------------CIIDK 479 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-------------------~iI~~ 479 (526)
++.||+++.|+.+|.|.+ .+.+|++ +.||.+|.|.. ++||+
T Consensus 75 ni~IG~~v~In~~~~I~d~~~I~IGd~------------------v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd 136 (203)
T PRK09527 75 NIHIGRNFYANFNLTIVDDYTVTIGDN------------------VLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGN 136 (203)
T ss_pred CcEEcCCcEECCCcEEecCCCEEECCC------------------CEECCCCEEEeCCCCCChhhccccccccCCeEECC
Confidence 566777777777777644 3667765 67777777741 34455
Q ss_pred CCEECCCcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 480 NAKIGKNVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 480 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
+|.||.+++|. ...++++++.|+.|+++
T Consensus 137 ~v~IG~~~~I~------~gv~IG~~~vIgagsvV 164 (203)
T PRK09527 137 NVWIGSHVVIN------PGVTIGDNSVIGAGSVV 164 (203)
T ss_pred CcEECCCCEEc------CCCEECCCCEECCCCEE
Confidence 55555554444 33455555555555544
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.7e-06 Score=77.36 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=46.8
Q ss_pred eEECCCCEEcc-eee---eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCC
Q 043870 406 SIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKN 480 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~ 480 (526)
..||++|+|+. +.+ ...+||+++.|+++|.|..+. ......+. ..- ..-..|+.||++|.|. +|+|.++
T Consensus 63 i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~---h~~~~~~~--~~~-~~~~~~v~IG~~~~Ig~~a~I~~g 136 (169)
T cd03357 63 IHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAG---HPLDPEER--NRG-LEYAKPITIGDNVWIGGGVIILPG 136 (169)
T ss_pred CEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCC---CCCChhHc--ccc-ceecCCcEeCCCEEECCCCEEeCC
Confidence 45666666653 333 256788888888888885431 00000000 000 0001247777777775 5777777
Q ss_pred CEECCCcEEccCCCcCC
Q 043870 481 AKIGKNVIIANKDGVEE 497 (526)
Q Consensus 481 ~~Ig~~~~i~~~~~v~~ 497 (526)
++||++++|+..+.+..
T Consensus 137 v~Ig~~~~VgagavV~~ 153 (169)
T cd03357 137 VTIGDNSVIGAGSVVTK 153 (169)
T ss_pred CEECCCCEECCCCEEcc
Confidence 77777777766655443
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.9e-06 Score=88.68 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=56.5
Q ss_pred EECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECC
Q 043870 407 IISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGK 485 (526)
Q Consensus 407 ~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~ 485 (526)
.||.|++|... ..++||++++||++|.|..++++|.... ..|.+.+.||+|+.|. +|.|-.|++||+
T Consensus 234 ~IG~Gv~Idh~--~giVIGe~avIGdnV~I~~gVtIGg~g~----------~~g~~~piIGd~V~IGagA~IlggV~IGd 301 (360)
T PLN02357 234 KIGQGILLDHA--TGVVIGETAVVGNNVSILHNVTLGGTGK----------QSGDRHPKIGDGVLIGAGTCILGNITIGE 301 (360)
T ss_pred EECCCeEECCC--CceEECCCCEECCCCEEeCCceecCccc----------cCCccCceeCCCeEECCceEEECCeEECC
Confidence 34555555421 1367777777777777777777765210 1222346778887776 567767778888
Q ss_pred CcEEccCCCcCCccccCCCeEEccCcEEEC
Q 043870 486 NVIIANKDGVEEAERPSDGFYIRSGITVVL 515 (526)
Q Consensus 486 ~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~ 515 (526)
+++|+....|.. +.+...+++|.=+.+|+
T Consensus 302 ga~IGAgSVV~~-dVP~~~~v~G~PArvv~ 330 (360)
T PLN02357 302 GAKIGAGSVVLK-DVPPRTTAVGNPARLIG 330 (360)
T ss_pred CCEECCCCEECc-ccCCCcEEECCCeEEEc
Confidence 888877766554 34444444444334444
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.5e-06 Score=84.26 Aligned_cols=29 Identities=34% Similarity=0.487 Sum_probs=23.9
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccC
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 492 (526)
|.||.|++|. ++.||+||.||+++++...
T Consensus 200 V~IGaga~Ilggv~IG~~a~IGAgSvV~~d 229 (273)
T PRK11132 200 VMIGAGAKILGNIEVGRGAKIGAGSVVLQP 229 (273)
T ss_pred cEEcCCCEEcCCCEECCCCEECCCCEECcc
Confidence 7888888886 5888888888888888753
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.1e-06 Score=75.17 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=16.5
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccCCCc
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGV 495 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v 495 (526)
+.||++|.|. +|.|..+++||++++|+..+.+
T Consensus 93 ~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V 125 (146)
T PRK10191 93 PHIGNGVELGANVIILGDITIGNNVTVGAGSVV 125 (146)
T ss_pred CEECCCcEEcCCCEEeCCCEECCCCEECCCCEE
Confidence 3555555555 3555555555555555544433
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.7e-06 Score=78.65 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=38.5
Q ss_pred ceEECCCcEECCCCEEe--ceEEECCcccchhHHHHHHhhCCCcceEECCCCEEec-------------eEECCCCEECC
Q 043870 421 HSIVGIRSRLEYGVELK--DTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-------------CIIDKNAKIGK 485 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-------------~iI~~~~~Ig~ 485 (526)
+..||+++.|+.++.|. ..+.+|++ +.|+++|.|.. ..+++.+.||+
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~------------------v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~ 123 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDN------------------VLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGD 123 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCC------------------CEECCCCEEEeCCCCCChhHccccceecCCcEeCC
Confidence 45566666666666554 34556654 56666666631 12233344444
Q ss_pred CcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 486 NVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 486 ~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
+|.|+..+.+....+++++++|+.|+++
T Consensus 124 ~~~Ig~~a~I~~gv~Ig~~~~VgagavV 151 (169)
T cd03357 124 NVWIGGGVIILPGVTIGDNSVIGAGSVV 151 (169)
T ss_pred CEEECCCCEEeCCCEECCCCEECCCCEE
Confidence 4444433333344556666666666554
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.4e-06 Score=81.74 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=54.4
Q ss_pred CCcccCCCCCCCCeeecC-eeEe-eeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCC
Q 043870 383 QKPIFTSPRFLPPSKIEK-CRVQ-DSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEG 460 (526)
Q Consensus 383 ~~~i~~~~~~~~~~~i~~-~~i~-~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~ 460 (526)
.+.+...+.+++++.+-. ..|. ++.++.+|.|.. +.++|.++.||+||.|+.+..++.-. | -.+
T Consensus 114 ~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~----~as~G~~a~VGkn~higgGa~I~GVL-e---------p~~ 179 (271)
T COG2171 114 GAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDG----RASVGSCAQVGKNSHIGGGASIGGVL-E---------PLQ 179 (271)
T ss_pred ccEEeeccEECCCcEEcccceEEECcccCcceEEee----eeeeeccEEECCCcccCCcceEeEEe-c---------CCC
Confidence 333444444444444421 2221 356666666653 34444444444444444444333310 0 013
Q ss_pred CcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCcc
Q 043870 461 KVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAE 499 (526)
Q Consensus 461 ~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~ 499 (526)
..|+.||+||.|. |+.+..++.+|++|+|+....+.+.+
T Consensus 180 a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~t 219 (271)
T COG2171 180 ANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDT 219 (271)
T ss_pred CCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCc
Confidence 5789999999887 67677777777777776664444333
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=3e-06 Score=88.76 Aligned_cols=65 Identities=14% Similarity=0.204 Sum_probs=44.1
Q ss_pred ccCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEEC
Q 043870 378 HFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMG 443 (526)
Q Consensus 378 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~ 443 (526)
.++++.+.+ ..+.++++|.|.++++.+++|+++|.|+ .|.|.+|+|++++.|+.+|.|.++++..
T Consensus 284 ~~i~~~~~i-~~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~ 349 (361)
T TIGR02091 284 KFVDSDAQV-VDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDK 349 (361)
T ss_pred eEecCCCEE-ECCEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECC
Confidence 344555432 3456777777765577778888888887 4777888888888888888876555433
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-06 Score=92.72 Aligned_cols=71 Identities=10% Similarity=0.225 Sum_probs=54.1
Q ss_pred eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcC
Q 043870 417 CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVE 496 (526)
Q Consensus 417 ~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~ 496 (526)
+.+.+|+||++|.| ++|.|++|+++.+ |.||++|+|.+|+|+.+|+||+++.|.++ .+.
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~~-ii~ 381 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRRC-VID 381 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEeeE-EEC
Confidence 45678999999999 7899998777666 89999999999999999999999999764 233
Q ss_pred CccccCCCeEEc
Q 043870 497 EAERPSDGFYIR 508 (526)
Q Consensus 497 ~~~~~~~~~~I~ 508 (526)
+.+++++++.|+
T Consensus 382 ~~~~i~~~~~i~ 393 (425)
T PRK00725 382 RGCVIPEGMVIG 393 (425)
T ss_pred CCCEECCCCEEC
Confidence 333444433333
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.6e-06 Score=89.58 Aligned_cols=63 Identities=19% Similarity=0.347 Sum_probs=37.0
Q ss_pred CCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEECC
Q 043870 380 YDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMGA 444 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~ 444 (526)
+.+++.+ +.+.++++|.|. +.+.+|+|+++|.|+ +|.|++|+|+++|.|++++.|.++++..+
T Consensus 281 i~~~~~i-~~~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~ 344 (369)
T TIGR02092 281 YAENSKV-ENSLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKD 344 (369)
T ss_pred EcCCCEE-EEeEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCC
Confidence 3344444 334455666664 345566677777776 36666777777777777777766554433
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.1e-06 Score=71.26 Aligned_cols=19 Identities=26% Similarity=0.287 Sum_probs=9.7
Q ss_pred EeceEECCCCEECCCcEEc
Q 043870 472 IKNCIIDKNAKIGKNVIIA 490 (526)
Q Consensus 472 i~~~iI~~~~~Ig~~~~i~ 490 (526)
+..++|+++|.|+.++.+.
T Consensus 52 ~~~~~Ig~~~~Ig~~~~i~ 70 (101)
T cd03354 52 KRHPTIGDNVVIGAGAKIL 70 (101)
T ss_pred CCCCEECCCcEEcCCCEEE
Confidence 3445555555555555554
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.6e-06 Score=89.70 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=46.8
Q ss_pred CCCCCCCCeeecCeeEeeeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEECC
Q 043870 388 TSPRFLPPSKIEKCRVQDSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMGA 444 (526)
Q Consensus 388 ~~~~~~~~~~i~~~~i~~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~ 444 (526)
..+.++++|.|.++.|.+|+||++|.|+ .|.|++|+|+++|+|+++|.|.++++..+
T Consensus 314 ~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~ 371 (407)
T PRK00844 314 QDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKN 371 (407)
T ss_pred EeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCC
Confidence 3466788888877888889999999997 47888999999999999999988766554
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=7e-06 Score=78.44 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=31.8
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEe--ceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELK--DTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK 473 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~ 473 (526)
+.++.+|.+.........||+++.|++++.|. ..+.+|++ +.||+++.|.
T Consensus 50 v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~------------------v~Ig~~v~I~ 101 (192)
T PRK09677 50 FTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRD------------------TLIASKVFIT 101 (192)
T ss_pred eEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCC------------------CEECCCeEEE
Confidence 55555555521112357788888888888876 45667765 6677776665
|
|
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=7e-06 Score=77.77 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=50.0
Q ss_pred eeEECCCCEEcc-eeee---ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECC
Q 043870 405 DSIISHGCFLRE-CSVE---HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDK 479 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v~---~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~ 479 (526)
+..||++++|+. |.+- ...||++|.|+++|.|....-..+ . .++..- .+=..|+.||++|.|. +|+|..
T Consensus 73 ~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~---~--~~~~~~-~~~~~~v~IGd~v~IG~~a~I~~ 146 (183)
T PRK10092 73 NIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLD---P--VARNSG-AELGKPVTIGNNVWIGGRAVINP 146 (183)
T ss_pred CcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCC---h--HHcccc-ceecCCeEECCCcEECCCCEECC
Confidence 455666666653 3331 237788888888877753211000 0 000000 0001358888888885 688888
Q ss_pred CCEECCCcEEccCCCcCC
Q 043870 480 NAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 480 ~~~Ig~~~~i~~~~~v~~ 497 (526)
+++||++++|+....+..
T Consensus 147 gv~IG~~~vIgagsvV~~ 164 (183)
T PRK10092 147 GVTIGDNVVVASGAVVTK 164 (183)
T ss_pred CCEECCCCEECCCCEEcc
Confidence 888888888877765543
|
|
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.3e-05 Score=86.16 Aligned_cols=215 Identities=19% Similarity=0.227 Sum_probs=136.9
Q ss_pred eEEEEcCCeecccC--HHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEEcCC--CCeeeeeccCCccccccccccccc
Q 043870 215 NILILSGDHLYRMD--YMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDET--GRIRQFLEKPKGENLRSMQIDTTA 290 (526)
Q Consensus 215 ~~lil~gD~l~~~d--l~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d~~--g~V~~~~eKp~~~~~~~~~~~~~~ 290 (526)
.+||.+||.+..++ +.+ -.++|++......+.+-.+..|+...|.+ +++..|..||.-++..++.
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~----- 222 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLS----- 222 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhh-----
Confidence 58999999866554 221 23466666666666666788999999887 6889999999876542221
Q ss_pred cccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC------CCChhhchHhhhh----------cCCcEEEEEec-ce
Q 043870 291 LGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE------ANDFGSEVIPMAT----------KDFNVQAYLFN-DY 353 (526)
Q Consensus 291 l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~------~~d~~~dil~~li----------~~~~V~~~~~~-~~ 353 (526)
.....+.++|+|+|+.+....+++..+.+ .-|+.+|++..+- +..++...... +.
T Consensus 223 --------~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 223 --------KTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred --------cCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 12456899999999999887777654322 1234455555532 23456666665 56
Q ss_pred eeecCChhhHHHhchhhcCCCCC-cccCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcce--eeeceEECCCcEE
Q 043870 354 WEDIGTIKSFFDANLSLTDKPPK-FHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLREC--SVEHSIVGIRSRL 430 (526)
Q Consensus 354 w~dIgt~~d~~~An~~ll~~~~~-~~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~~--~v~~s~ig~~~~I 430 (526)
++.+||-.+|+.....+-..... ...+..+. .+. ..+.+.+|.++.++.+++. -|++|.||.+++|
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~~~~~~i~~~~~--------~~~---~~~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~i 363 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLVTDQRRIMHRKV--------KPH---PAMFVQNAVLSGKLTAENATLWIENSHVGEGWKL 363 (974)
T ss_pred eEEecCcHHHhcCchhHHHHhhhhhhhhcccc--------CCC---CceEEEeeEecCCcccCCCeEEEEeeEecCCeEE
Confidence 99999999999755443221100 00111111 110 1234567889999999864 3588999999999
Q ss_pred CCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEE
Q 043870 431 EYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCII 477 (526)
Q Consensus 431 ~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI 477 (526)
|++|+|.+.-..+-+ ..|-+++.|...=+
T Consensus 364 g~~~Iisgv~~~~~~------------------~~vP~~~ci~~vpl 392 (974)
T PRK13412 364 ASRSIITGVPENSWN------------------LDLPEGVCIDVVPV 392 (974)
T ss_pred cCCcEEecccccccc------------------eecCCCcEEEEEEc
Confidence 999999776433322 56777777765433
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.3e-06 Score=76.17 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=20.8
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccC
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 492 (526)
+.||.++.|. ++.|+++|.||+++++...
T Consensus 99 ~~Ig~~~~I~~~v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 99 VELGANVIILGDITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred cEEcCCCEEeCCCEECCCCEECCCCEECCc
Confidence 6777777776 4777777777777777765
|
|
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.5e-06 Score=87.23 Aligned_cols=97 Identities=20% Similarity=0.393 Sum_probs=63.8
Q ss_pred CeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEEcCCC---------CeeeeeccCCccccccc
Q 043870 214 ENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETG---------RIRQFLEKPKGENLRSM 284 (526)
Q Consensus 214 e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d~~g---------~V~~~~eKp~~~~~~~~ 284 (526)
.-++|.++|+++...-...+. + .+++++++..+.+..-++..|+.++|+++ .+..|..||.......
T Consensus 54 pGv~V~s~D~vl~~~~~~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~- 129 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDDPLID-W--DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRA- 129 (414)
T ss_pred cceEEEecccccccCccccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHh-
Confidence 358999999543332112221 2 23677888888877777889999999988 8999999998764311
Q ss_pred cccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHh
Q 043870 285 QIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 285 ~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
...+ ........++|++.|+.+....++..
T Consensus 130 --~~av-------~~~~~~~ldsG~~~~s~~~~e~L~~~ 159 (414)
T PF07959_consen 130 --SGAV-------LPDGNVLLDSGIVFFSSKAVESLLYL 159 (414)
T ss_pred --CCcc-------cCCCcccccccceeccHHHHHHHHHh
Confidence 1100 01134466899999999877766543
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.2e-06 Score=86.40 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=34.5
Q ss_pred ceEECCCcEECCCCEEece--------EEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEcc
Q 043870 421 HSIVGIRSRLEYGVELKDT--------MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIAN 491 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~--------v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 491 (526)
+++||++|.|..+++|+++ ..+|++ |.||.|++|. ++.||+||.||+|+++..
T Consensus 231 ~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~------------------V~IGagA~IlG~V~IGd~aiIGAGSVV~k 292 (355)
T PLN02739 231 TAVIGDRVSILHGVTLGGTGKETGDRHPKIGDG------------------ALLGACVTILGNISIGAGAMVAAGSLVLK 292 (355)
T ss_pred CCEECCCCEEcCCceeCCcCCcCCCCCcEECCC------------------CEEcCCCEEeCCeEECCCCEECCCCEECC
Confidence 6666666666666666532 445544 6777777764 477777777777777764
Q ss_pred C
Q 043870 492 K 492 (526)
Q Consensus 492 ~ 492 (526)
.
T Consensus 293 D 293 (355)
T PLN02739 293 D 293 (355)
T ss_pred C
Confidence 3
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.8e-06 Score=77.01 Aligned_cols=79 Identities=24% Similarity=0.369 Sum_probs=46.2
Q ss_pred ECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCC
Q 043870 408 ISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKN 486 (526)
Q Consensus 408 Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~ 486 (526)
||+|.+|..+ ...+||+.++||++|.|..++.+|..--+.+ -.+-.+.+| |.||.|++|- |-.||+|++||+|
T Consensus 76 IG~g~fIdHg--~GvVIgeta~IGddv~I~~gVTLGgtg~~~g-~RhPtIg~~---V~IGagAkILG~I~IGd~akIGA~ 149 (194)
T COG1045 76 IGRGLFIDHG--TGVVIGETAVIGDDVTIYHGVTLGGTGKESG-KRHPTIGNG---VYIGAGAKILGNIEIGDNAKIGAG 149 (194)
T ss_pred ECCceEEcCC--ceEEEcceeEECCCeEEEcceEecCCCCcCC-CCCCccCCC---eEECCCCEEEcceEECCCCEECCC
Confidence 4444444321 1346666666666666666666665211111 111122222 7888888875 6889999999999
Q ss_pred cEEccC
Q 043870 487 VIIANK 492 (526)
Q Consensus 487 ~~i~~~ 492 (526)
+++...
T Consensus 150 sVVlkd 155 (194)
T COG1045 150 SVVLKD 155 (194)
T ss_pred ceEccC
Confidence 998765
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.5e-06 Score=83.42 Aligned_cols=100 Identities=20% Similarity=0.253 Sum_probs=73.2
Q ss_pred CCCCCCeeecCeeEeeeEECCCCEEcc-eee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEEC
Q 043870 390 PRFLPPSKIEKCRVQDSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIG 467 (526)
Q Consensus 390 ~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig 467 (526)
+|+.|++.+-. .+.|++|++|-. +.| -++.++.++.|+-+++++.|+.+|.+ +.||
T Consensus 109 ~RI~p~a~VR~----ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn------------------~hig 166 (271)
T COG2171 109 VRIVPGAIVRL----GAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKN------------------SHIG 166 (271)
T ss_pred eeecCccEEee----ccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCC------------------cccC
Confidence 56666666532 478888888865 556 67889999999999999988888886 7888
Q ss_pred CCCEEe--------c-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCc
Q 043870 468 RDTKIK--------N-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGI 511 (526)
Q Consensus 468 ~~~~i~--------~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~ 511 (526)
-++.|. + ++|++||.||+|+++.-...+.+.+.++-|+||..++
T Consensus 167 gGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~t 219 (271)
T COG2171 167 GGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDT 219 (271)
T ss_pred CcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCc
Confidence 888886 3 7899999999998665554455555555555555443
|
|
| >PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.2e-05 Score=71.90 Aligned_cols=97 Identities=12% Similarity=0.175 Sum_probs=63.7
Q ss_pred CCccceeeCC--cchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCcc
Q 043870 113 RAKPAVPIGG--CYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKW 190 (526)
Q Consensus 113 ~pK~LlpV~g--~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~ 190 (526)
.+|+|+++.| + |||+++++.+. ..+++|+|+++... . +. .+ + +.++.+...
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~~-~----~~-~~--------~---~~~i~d~~~-------- 55 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPGQ-P----LP-EL--------P---APVLRDELR-------- 55 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCCc-c----cc-cC--------C---CCEeccCCC--------
Confidence 5899999999 9 99999999866 46899999998642 1 11 00 1 223332221
Q ss_pred ccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHc
Q 043870 191 FQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINS 239 (526)
Q Consensus 191 ~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~ 239 (526)
..|...++..++..... ...+.+++++||+ ++..+ +..+++.+...
T Consensus 56 g~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~ 103 (178)
T PRK00576 56 GLGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAAQT 103 (178)
T ss_pred CCCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhhcC
Confidence 15777777766654421 2348899999999 66666 56666654433
|
|
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00016 Score=73.42 Aligned_cols=214 Identities=11% Similarity=0.186 Sum_probs=126.4
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc----CC-cEEEEEecc-ChhHHHHHhhhcccCCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS----GI-KKIYILTQF-NSQSLNRHISRTYNLGD 165 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~----gi-~~I~Iv~~~-~~~~l~~~l~~~~~~~~ 165 (526)
++.+|+||||.||||+ ...||.|+||....+++|..++++... |. =..+|.+++ ..+...++|.+ ++...
T Consensus 3 kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~-~~~~~ 78 (300)
T cd00897 3 KLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKK-YAGVN 78 (300)
T ss_pred cEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHH-cCCCc
Confidence 5788999999999998 678999999954448999999998752 32 246666664 45577888875 32211
Q ss_pred -Cc-ccCCCeEEEEec------ccccCcCCCcc-ccChHHHHHHHH--HHhhhhccCCCCeEEEEcCCeecccCHHHHHH
Q 043870 166 -GM-NFGDGFVEVLAA------TQRQGESGKKW-FQGTADAVRQFI--WMFEDAKHRNIENILILSGDHLYRMDYMDFVQ 234 (526)
Q Consensus 166 -~~-~~~~~~v~vl~~------~~~~~~~~~~~-~~Gt~~al~~~~--~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~ 234 (526)
.+ .|..+.+.-+.. ..........| |.|.++-..... ..+++.+.+..+.+.+.+.|.+...-=..++-
T Consensus 79 ~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg 158 (300)
T cd00897 79 VDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILN 158 (300)
T ss_pred cCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHH
Confidence 11 011111110000 00000011122 356655443332 22444444678999999999976543345777
Q ss_pred HHHHcCCcEEEEEEEccCCcCCCceEEEE-cCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEc
Q 043870 235 HHINSGGDISVCCLPVDESRASDFGLMKI-DETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFK 313 (526)
Q Consensus 235 ~h~~~~ad~ti~~~~~~~~~~~~~g~v~~-d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~ 313 (526)
.|.++++++++=+.+...+. .+=|.+.. |..=+|.++.+-|..... ..+ + ...-.+.+++.++|+
T Consensus 159 ~~~~~~~~~~~evv~Kt~~d-ek~G~l~~~~g~~~vvEyse~p~e~~~-~~~-~-----------~~~~~~~nt~n~~~~ 224 (300)
T cd00897 159 HMVDNKAEYIMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVD-EFK-S-----------IKKFKIFNTNNLWVN 224 (300)
T ss_pred HHHhcCCceEEEEeecCCCC-CcccEEEEECCEEEEEEeccCCHHHHH-hhc-C-----------cccceEEEEeEEEEE
Confidence 78889999887665544322 23454443 433357888887764310 000 0 002347899999999
Q ss_pred HHHHHHHHHh
Q 043870 314 TEVLLKVLRW 323 (526)
Q Consensus 314 ~~~l~~ll~~ 323 (526)
-+.|.++++.
T Consensus 225 l~~L~~~~~~ 234 (300)
T cd00897 225 LKAVKRVVEE 234 (300)
T ss_pred HHHHHHHHHh
Confidence 9988877653
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.6e-06 Score=85.01 Aligned_cols=70 Identities=20% Similarity=0.404 Sum_probs=55.7
Q ss_pred eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcC
Q 043870 417 CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVE 496 (526)
Q Consensus 417 ~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~ 496 (526)
+.|++|.|+.+|.|. | +|.+|++..+ +.|+++|.|.+|+|-.+|.||+||+|.++ -+.
T Consensus 292 s~v~nSLv~~GciI~-G-~V~nSVL~~~-------------------v~I~~gs~i~~svim~~~~IG~~~~l~~a-IID 349 (393)
T COG0448 292 SEVSNSLVAGGCIIS-G-TVENSVLFRG-------------------VRIGKGSVIENSVIMPDVEIGEGAVLRRA-IID 349 (393)
T ss_pred ceEeeeeeeCCeEEE-e-EEEeeEEecC-------------------eEECCCCEEEeeEEeCCcEECCCCEEEEE-EeC
Confidence 345789999999997 4 9999999887 89999999999999999999999999875 233
Q ss_pred CccccCCCeEEc
Q 043870 497 EAERPSDGFYIR 508 (526)
Q Consensus 497 ~~~~~~~~~~I~ 508 (526)
++.++++|+.|+
T Consensus 350 k~v~I~~g~~i~ 361 (393)
T COG0448 350 KNVVIGEGVVIG 361 (393)
T ss_pred CCcEeCCCcEEc
Confidence 343334444333
|
|
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00044 Score=66.79 Aligned_cols=176 Identities=24% Similarity=0.273 Sum_probs=101.6
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
.|||+|-|.++|+. -|.|.+++|+ |||+|+++++.+++ +++|+|.|... ++.+.+. .| + .
T Consensus 1 iaiIpAR~gS~rlp------~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaTd~~--~i~~~~~-~~--------g-~ 61 (217)
T PF02348_consen 1 IAIIPARGGSKRLP------GKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVATDDE--EIDDIAE-EY--------G-A 61 (217)
T ss_dssp EEEEEE-SSSSSST------TGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEESSH--HHHHHHH-HT--------T-S
T ss_pred CEEEecCCCCCCCC------cchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeCCCH--HHHHHHH-Hc--------C-C
Confidence 38999999999998 7999999999 99999999999985 79988888653 3344443 33 1 1
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCc-EEEEEEE
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGD-ISVCCLP 249 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad-~ti~~~~ 249 (526)
.+.+.... . ..++ .....+...+.. ...+.++.+.||. +.+.. +.++++.+.+..++ +.-.+.+
T Consensus 62 ~v~~~~~~-~--------~~~~-~r~~~~~~~~~~---~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~ 128 (217)
T PF02348_consen 62 KVIFRRGS-L--------ADDT-DRFIEAIKHFLA---DDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDP 128 (217)
T ss_dssp EEEE--TT-S--------SSHH-HHHHHHHHHHTC---STTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEE
T ss_pred eeEEcChh-h--------cCCc-ccHHHHHHHhhh---hHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhcccccc
Confidence 13222211 1 1233 333333333321 1234788999999 66554 88999998888776 3222332
Q ss_pred ccC----CcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcC-CCceeeeeEEEEcHH
Q 043870 250 VDE----SRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARN-FPYIASMGIYLFKTE 315 (526)
Q Consensus 250 ~~~----~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~-~~~l~~~Giyif~~~ 315 (526)
... ...... ....+.++....+.+.+..... .+.... ..++...++|.+++.
T Consensus 129 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 185 (217)
T PF02348_consen 129 VGSSVEIFNFNPL-KVLFDDDGLELYFSEHVIPYIR-------------RNPEEFKYFYIRQVGIYAFRKE 185 (217)
T ss_dssp ECSHHHHTSTTST-EEEECTTSBEEEEESSESSECH-------------HHHCSSSSTEEEEEEEEEEEHH
T ss_pred ccchhhcccccce-EEEeccccchhhcccCCCcccc-------------cccccccccccccccccccccc
Confidence 221 111111 2233444555555554443211 000000 135778999999997
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00065 Score=75.32 Aligned_cols=222 Identities=14% Similarity=0.136 Sum_probs=127.8
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceee---CCcchhHHHHHHHHHhc--------C----CcEEEEEecc-ChhHHH
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPI---GGCYRLIDVPMSNCINS--------G----IKKIYILTQF-NSQSLN 154 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV---~g~~pLI~~~l~~l~~~--------g----i~~I~Iv~~~-~~~~l~ 154 (526)
.++.+|+||||.||||+ ...||.++|+ .|+ ++++..++++... + .-.++|.+.+ ..+...
T Consensus 127 ~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 127 GNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred CcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 56889999999999999 6789999998 377 9999999997653 1 1246777774 445777
Q ss_pred HHhhhcccCCCC---cc-cCCCeEEEEecc-ccc-----CcCCC-ccccChHHHHHHHH--HHhhhhccCCCCeEEEEcC
Q 043870 155 RHISRTYNLGDG---MN-FGDGFVEVLAAT-QRQ-----GESGK-KWFQGTADAVRQFI--WMFEDAKHRNIENILILSG 221 (526)
Q Consensus 155 ~~l~~~~~~~~~---~~-~~~~~v~vl~~~-~~~-----~~~~~-~~~~Gt~~al~~~~--~~i~~~~~~~~e~~lil~g 221 (526)
++|.+.-.|+.. +. |....+..+... ... +...- ..|.|.++-..... ..++++..+..+.+.+.+.
T Consensus 203 ~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~v 282 (615)
T PLN02830 203 KLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQD 282 (615)
T ss_pred HHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence 888754323321 11 111222222211 000 00001 12456654433332 3355555578899999999
Q ss_pred Ce-ecccCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEE--cCCCC----eeeeeccCCccccccccccccccccc
Q 043870 222 DH-LYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKI--DETGR----IRQFLEKPKGENLRSMQIDTTALGLS 294 (526)
Q Consensus 222 D~-l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~--d~~g~----V~~~~eKp~~~~~~~~~~~~~~l~~s 294 (526)
|. +.......++-.+...++++.+-+.+... ...-|++.. ..+|+ +++|.|.+..- +..+.+..-+.-
T Consensus 283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll--~~a~~p~g~l~~- 357 (615)
T PLN02830 283 TNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLL--RATGHPDGDVND- 357 (615)
T ss_pred cchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHH--HhccCCCccccc-
Confidence 99 44444578888888899998887776533 234566554 23344 34555554321 001111000000
Q ss_pred hhhhcCCCceeeeeEEEEcHHHHHHHHHh
Q 043870 295 AQEARNFPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 295 ~~~~~~~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
.+. .+.+..|+...+++-..+.+.|+.
T Consensus 358 ~~~--~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 358 ETG--YSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred ccc--cccCCCCceeeEeeHHHHHHHHHh
Confidence 000 133345888899998887777764
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.1e-05 Score=69.61 Aligned_cols=81 Identities=17% Similarity=0.314 Sum_probs=46.7
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEEC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIG 484 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig 484 (526)
+.|+++|.|.. .....||++|.|++++.|.... .++.... ...-..|+.||++|.|. +|+|..+++||
T Consensus 10 ~~I~~~~~i~~--~~~i~IG~~~~I~~~~~I~~~~---h~~~~~~------~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig 78 (107)
T cd05825 10 SWIGEGVWIYN--LAPVTIGSDACISQGAYLCTGS---HDYRSPA------FPLITAPIVIGDGAWVAAEAFVGPGVTIG 78 (107)
T ss_pred CEECCCCEEee--CCceEECCCCEECCCeEeecCC---CCCCcCc------cceecCCEEECCCCEECCCCEECCCCEEC
Confidence 44444444431 1246778888888777775321 1110000 00012358888888887 58888888888
Q ss_pred CCcEEccCCCcCC
Q 043870 485 KNVIIANKDGVEE 497 (526)
Q Consensus 485 ~~~~i~~~~~v~~ 497 (526)
++++|+....+.+
T Consensus 79 ~~~~i~~gs~v~~ 91 (107)
T cd05825 79 EGAVVGARSVVVR 91 (107)
T ss_pred CCCEECCCCEEeC
Confidence 8888877765554
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.7e-06 Score=85.66 Aligned_cols=87 Identities=22% Similarity=0.224 Sum_probs=65.7
Q ss_pred CcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCC
Q 043870 384 KPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEG 460 (526)
Q Consensus 384 ~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~ 460 (526)
+.+.+.+.+++.+.| .++.|. ++.||++|.|++ +.|.+|+|.++|+|++++.|.++++..+
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~---------------- 319 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGEN---------------- 319 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCC----------------
Confidence 445556666666666 334444 499999999985 6789999999999999999999998887
Q ss_pred CcceEECCCCEEeceEECCCCEECCCcEEccCCCc
Q 043870 461 KVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGV 495 (526)
Q Consensus 461 ~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v 495 (526)
+.||.++ .|++ +.+|.++.+.....+
T Consensus 320 ---~~ig~~~-----~i~d-~~~g~~~~i~~g~~~ 345 (358)
T COG1208 320 ---CKIGASL-----IIGD-VVIGINSEILPGVVV 345 (358)
T ss_pred ---cEECCce-----eecc-eEecCceEEcCceEe
Confidence 7888822 2777 777777777665433
|
|
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00015 Score=77.15 Aligned_cols=217 Identities=19% Similarity=0.268 Sum_probs=125.0
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHh----cCC-cEEEEEec-cChhHHHHHhhhcccC
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCIN----SGI-KKIYILTQ-FNSQSLNRHISRTYNL 163 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~----~gi-~~I~Iv~~-~~~~~l~~~l~~~~~~ 163 (526)
..++.+|+||||.||||+ ...||.++||.....+++..++++.. .|. -..+|.+. ...+++.+++.+.+++
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~ 130 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGL 130 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGS
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCC
Confidence 456899999999999998 67899999996554899988888775 232 24566666 5566888899872222
Q ss_pred CCCcc-cCCCeEEEEecccccC-c-CC------Ccc-ccChHHHHHHHH--HHhhhhccCCCCeEEEEcCCeecccCHHH
Q 043870 164 GDGMN-FGDGFVEVLAATQRQG-E-SG------KKW-FQGTADAVRQFI--WMFEDAKHRNIENILILSGDHLYRMDYMD 231 (526)
Q Consensus 164 ~~~~~-~~~~~v~vl~~~~~~~-~-~~------~~~-~~Gt~~al~~~~--~~i~~~~~~~~e~~lil~gD~l~~~dl~~ 231 (526)
...+. |....+..+....... + .. ..| |.|.++-..... ..+++...+..+.+.+.+.|.+...-=..
T Consensus 131 ~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~ 210 (420)
T PF01704_consen 131 DVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPV 210 (420)
T ss_dssp SCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HH
T ss_pred CcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHH
Confidence 21111 1112222221111000 0 00 123 446665443332 24444445788999999999976554456
Q ss_pred HHHHHHHcCCcEEEEEEEccCCcCCCceEEEE-cCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEE
Q 043870 232 FVQHHINSGGDISVCCLPVDESRASDFGLMKI-DETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIY 310 (526)
Q Consensus 232 ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~-d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giy 310 (526)
++-.+.+.++++.+-+.+..... ..-|++.. +..-+|.++.+-|..... .+. ......+.++|-.
T Consensus 211 ~lG~~~~~~~~~~~evv~Kt~~d-ek~Gvl~~~~G~~~vvEysqip~~~~~-~~~------------~~~~~~~FntnNi 276 (420)
T PF01704_consen 211 FLGYMIEKNADFGMEVVPKTSPD-EKGGVLCRYDGKLQVVEYSQIPKEHMA-EFK------------DIKGFLLFNTNNI 276 (420)
T ss_dssp HHHHHHHTT-SEEEEEEE-CSTT-TSSEEEEEETTEEEEEEGGGS-HHGHH-HHT------------STTTSBEEEEEEE
T ss_pred HHHHHHhccchhheeeeecCCCC-CceeEEEEeCCccEEEEeccCCHHHHH-hhh------------ccccceEEEecee
Confidence 77888888999988777754322 23455543 322346677666554210 000 0012356788888
Q ss_pred EEcHHHHHHHHHh
Q 043870 311 LFKTEVLLKVLRW 323 (526)
Q Consensus 311 if~~~~l~~ll~~ 323 (526)
+|+-+.+.++++.
T Consensus 277 ~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 277 WFSLDFLKRLLER 289 (420)
T ss_dssp EEEHHHHHHHHHT
T ss_pred eEEHHHHHHHHHh
Confidence 9999999888765
|
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A .... |
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.4e-05 Score=68.46 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=23.0
Q ss_pred EECCCCEEcc-eee---eceEECCCcEECCCCEEece
Q 043870 407 IISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKDT 439 (526)
Q Consensus 407 ~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~~ 439 (526)
.||++|+|++ +.+ ..+.||++|.|+++|.|.++
T Consensus 3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 3 SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred EECCCcEECCCCEEecCCceEECCCCEECCCCEEECC
Confidence 4555555553 333 26889999999999998876
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.1e-05 Score=66.65 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=6.9
Q ss_pred eEECCCCEECCCcEEc
Q 043870 475 CIIDKNAKIGKNVIIA 490 (526)
Q Consensus 475 ~iI~~~~~Ig~~~~i~ 490 (526)
++|+++|.||.++.|.
T Consensus 57 v~Ig~~~~ig~~~~i~ 72 (107)
T cd05825 57 IVIGDGAWVAAEAFVG 72 (107)
T ss_pred EEECCCCEECCCCEEC
Confidence 3444444444444443
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.6e-05 Score=76.24 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=6.9
Q ss_pred CcceEECCCCEEe
Q 043870 461 KVPVGIGRDTKIK 473 (526)
Q Consensus 461 ~~~~~Ig~~~~i~ 473 (526)
+.|+.||++|.|.
T Consensus 223 ~~pV~IGe~~~IG 235 (319)
T TIGR03535 223 KEVISIGERCLLG 235 (319)
T ss_pred cccEEECCCcEEC
Confidence 4455555555554
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.6e-05 Score=65.43 Aligned_cols=27 Identities=41% Similarity=0.583 Sum_probs=12.7
Q ss_pred eEECCCCEEec-eEECCCCEECCCcEEc
Q 043870 464 VGIGRDTKIKN-CIIDKNAKIGKNVIIA 490 (526)
Q Consensus 464 ~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~ 490 (526)
+.|+.++.+.. +.|+++|.|+++++|.
T Consensus 61 ~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 61 VVIGAGAKILGNITIGDNVKIGANAVVT 88 (101)
T ss_pred cEEcCCCEEECcCEECCCCEECCCCEEC
Confidence 34444444433 4455555555555544
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.6e-05 Score=65.17 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=14.5
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccC
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 492 (526)
+.||++|.|. +++|..+++||+++.++..
T Consensus 59 ~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~ 88 (109)
T cd04647 59 IVIGDDVWIGANVVILPGVTIGDGAVVGAG 88 (109)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEECCC
Confidence 4555555552 3455555555555555443
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.3e-05 Score=74.23 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=15.0
Q ss_pred CEECCCcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 481 AKIGKNVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 481 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
+.||++|.|+..+.+....++|+++.|+.|+++
T Consensus 130 v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV 162 (183)
T PRK10092 130 VTIGNNVWIGGRAVINPGVTIGDNVVVASGAVV 162 (183)
T ss_pred eEECCCcEECCCCEECCCCEECCCCEECCCCEE
Confidence 333333333333333334455555666555443
|
|
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00029 Score=75.90 Aligned_cols=216 Identities=19% Similarity=0.246 Sum_probs=125.8
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeC---CcchhHHHHHHHHHhc--------------CC-cEEEEEec-cChh
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIG---GCYRLIDVPMSNCINS--------------GI-KKIYILTQ-FNSQ 151 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~---g~~pLI~~~l~~l~~~--------------gi-~~I~Iv~~-~~~~ 151 (526)
.++.+|+||||.||||+ ...||.|++|+ ++ ++++...+++... +. =..+|.+. ...+
T Consensus 115 gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~ 190 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDE 190 (493)
T ss_pred CCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhH
Confidence 56788999999999999 77899999884 77 8999998886431 11 14577777 4555
Q ss_pred HHHHHhhhcccCCCC---cc-cCCCeEEEEeccc-----ccCcCCCccccChHHHHHHHHH--HhhhhccCCCCeEEEEc
Q 043870 152 SLNRHISRTYNLGDG---MN-FGDGFVEVLAATQ-----RQGESGKKWFQGTADAVRQFIW--MFEDAKHRNIENILILS 220 (526)
Q Consensus 152 ~l~~~l~~~~~~~~~---~~-~~~~~v~vl~~~~-----~~~~~~~~~~~Gt~~al~~~~~--~i~~~~~~~~e~~lil~ 220 (526)
.+.++|.+.-.|+-. +. |..+.+..+.... .+. .-...|.|+++-...... .+++.+.+..+.+.+.+
T Consensus 191 ~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~-~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~ 269 (493)
T PLN02435 191 ATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPF-KVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYG 269 (493)
T ss_pred HHHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCc-ccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEe
Confidence 788888754324321 11 1111111111000 000 001224677655443332 35555557889999999
Q ss_pred CCe-ecccCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEE-cCCCC--eeeeeccCCccccccccccccccccchh
Q 043870 221 GDH-LYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKI-DETGR--IRQFLEKPKGENLRSMQIDTTALGLSAQ 296 (526)
Q Consensus 221 gD~-l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~-d~~g~--V~~~~eKp~~~~~~~~~~~~~~l~~s~~ 296 (526)
.|. +...---.++-.+...++++.+-+.+...+. ..-|++.. +.+|+ |++|.|-+....... .-+++.|
T Consensus 270 vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~-EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~-~~~~g~L----- 342 (493)
T PLN02435 270 VDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQ-EKVGVFVRRGKGGPLTVVEYSELDQAMASAI-NQQTGRL----- 342 (493)
T ss_pred cccccccccCHHHHHHHHhcCCceEEEeeecCCCC-CceeEEEEecCCCCEEEEEeccCCHHHHhcc-Ccccccc-----
Confidence 999 4545445667777888999887665543221 23466654 34554 666666543210000 0011111
Q ss_pred hhcCCCceeeeeEEEEcHHHHHHHHH
Q 043870 297 EARNFPYIASMGIYLFKTEVLLKVLR 322 (526)
Q Consensus 297 ~~~~~~~l~~~Giyif~~~~l~~ll~ 322 (526)
.-+..+++.++|+-++|..+.+
T Consensus 343 ----~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 343 ----RYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred ----ccchhhHHHhhccHHHHHHHHH
Confidence 2356788889999999987653
|
|
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00069 Score=64.80 Aligned_cols=116 Identities=23% Similarity=0.391 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChh--HHHHHhhhcccCCCCccc
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQ--SLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~--~l~~~l~~~~~~~~~~~~ 169 (526)
+.+||-|-=.+|||. -|.|+|++|+ |||+++|+++..+. +++++|.|....+ .+.++.. .+
T Consensus 4 I~~IiQARmgStRLp------gKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~-~~-------- 67 (241)
T COG1861 4 ILVIIQARMGSTRLP------GKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCR-SH-------- 67 (241)
T ss_pred EEEEeeecccCccCC------cchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHH-Hc--------
Confidence 444444444567887 7999999999 99999999999885 6899999986655 3444443 21
Q ss_pred CCCeEEEEecccccCcCCCccccChH-HHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTA-DAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDIS 244 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~-~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~t 244 (526)
+ +.+. .|.. +.|..+...++. ...+.++=+.||. +.+.. +...++.|-++++|.+
T Consensus 68 --G-~~vf--------------rGs~~dVL~Rf~~a~~a---~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~ 125 (241)
T COG1861 68 --G-FYVF--------------RGSEEDVLQRFIIAIKA---YSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYV 125 (241)
T ss_pred --C-eeEe--------------cCCHHHHHHHHHHHHHh---cCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccc
Confidence 1 2221 3433 445555555542 3457888899999 77777 5778899999998754
|
|
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00023 Score=72.67 Aligned_cols=219 Identities=11% Similarity=0.084 Sum_probs=125.6
Q ss_pred EEEEEcCCCCccccCccCCCCccceee---CCcchhHHHHHHHHHhcC---------CcEEEEEec-cChhHHHHHhhhc
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPI---GGCYRLIDVPMSNCINSG---------IKKIYILTQ-FNSQSLNRHISRT 160 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV---~g~~pLI~~~l~~l~~~g---------i~~I~Iv~~-~~~~~l~~~l~~~ 160 (526)
.+|+||||.||||+ ...||.++|| .|+ ++++..++++.... .-.++|.+. ...+++.+++.+.
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 57899999999999 7889999999 578 99999999987532 125677777 4555778888754
Q ss_pred ccCCCC---cc-cCCCeEEEEecccccC-------cCCCccccChHHHHHHHH--HHhhhhccCCCCeEEEEcCCe-ecc
Q 043870 161 YNLGDG---MN-FGDGFVEVLAATQRQG-------ESGKKWFQGTADAVRQFI--WMFEDAKHRNIENILILSGDH-LYR 226 (526)
Q Consensus 161 ~~~~~~---~~-~~~~~v~vl~~~~~~~-------~~~~~~~~Gt~~al~~~~--~~i~~~~~~~~e~~lil~gD~-l~~ 226 (526)
-.|+.. +. |....+..+...+..- ..-...|.|.++-..... ..+++...+..+.+.+..-|. +..
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 224321 11 1222233332110000 000112567665444332 234444457788999999998 555
Q ss_pred cCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEE--cCCCC--e--eeeeccCCccccccccccccccccchhhhcC
Q 043870 227 MDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKI--DETGR--I--RQFLEKPKGENLRSMQIDTTALGLSAQEARN 300 (526)
Q Consensus 227 ~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~--d~~g~--V--~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~ 300 (526)
...-.++-.+...++++...+.+..+ ...-|++.. ..+|+ | ++|.|-+..-. ....+..- .++ ..-.
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~--~~~~~~g~--~~~-~~~~ 230 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGKSMTINVEYNQLDPLLR--ASGKDDGD--VDD-KTGF 230 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCceEEEEEEeecCCHHHH--hcCCCCCC--ccc-cccc
Confidence 44555666667788888776665333 235676653 23343 3 66666443110 00000000 000 0001
Q ss_pred CCceeeeeEEEEcHHHHHHHHHh
Q 043870 301 FPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 301 ~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
+.+..+++.++|+-+.+.+.++.
T Consensus 231 s~f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 231 SPFPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred ccCCCeeeeEEEeHHHHHHHHhh
Confidence 34578999999998888777764
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f |
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0001 Score=67.12 Aligned_cols=75 Identities=20% Similarity=0.078 Sum_probs=39.3
Q ss_pred ceEECCCcEECCCCEEeceEEECCccc-chhHHH-----------HHHhhCCCcceEECCCCEEe-ceEECCCCEECCCc
Q 043870 421 HSIVGIRSRLEYGVELKDTMMMGADYY-QTEAEI-----------AALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNV 487 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~v~~~~~~~-~~~~~~-----------~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~ 487 (526)
.+.||++|.|++++.|... -...+. .+..+. ......-..++.||++|.|. +|+|..+++||+++
T Consensus 21 ~i~IG~~~~I~~~v~i~~~--~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~ 98 (145)
T cd03349 21 KLSIGKFCSIAPGVKIGLG--GNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDVWIGHGATILPGVTIGDGA 98 (145)
T ss_pred CeEECCCCEECCCCEECCC--CCCCCCCccccceEeeccccccccccccccccCCcEECCCCEECCCCEEeCCCEECCCC
Confidence 6788888888888888655 111110 000000 00000112346777777776 46666666666666
Q ss_pred EEccCCCcCC
Q 043870 488 IIANKDGVEE 497 (526)
Q Consensus 488 ~i~~~~~v~~ 497 (526)
+|+....+..
T Consensus 99 vIgags~V~~ 108 (145)
T cd03349 99 VIAAGAVVTK 108 (145)
T ss_pred EECCCCEEcc
Confidence 6666554443
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.2e-05 Score=68.34 Aligned_cols=86 Identities=19% Similarity=0.301 Sum_probs=51.6
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceE------------EECCcccchhHHHHHHhhCCCcceEECCCCEEe
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTM------------MMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK 473 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v------------~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~ 473 (526)
+++-+||.|+ +.+-++-+|.+|.+++++.|+..+ ++|+. +.|+++|.+.
T Consensus 40 tIv~~g~iIR-GDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdh------------------VFieE~cVVn 100 (184)
T KOG3121|consen 40 TIVEEGVIIR-GDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDH------------------VFIEEECVVN 100 (184)
T ss_pred EEEeeCcEEe-cccccceEcceEEeccccccCCchHHhcCCceeeeeeecce------------------EEEecceEee
Confidence 7788888885 345567777777777777776543 45543 6667777666
Q ss_pred ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccC
Q 043870 474 NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSG 510 (526)
Q Consensus 474 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g 510 (526)
.+.||.-+++|+|++|++.-.+.+-+++.+++.+...
T Consensus 101 AAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpe 137 (184)
T KOG3121|consen 101 AAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPE 137 (184)
T ss_pred hhhheeeeEeccceeEcCceEhhhheeccCCcccCcc
Confidence 4555555555555555544333344455555555443
|
|
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00081 Score=71.18 Aligned_cols=183 Identities=19% Similarity=0.271 Sum_probs=111.0
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeC-CcchhHHHHHHHHHhc----CC-cEEEEEeccChhHHHHHhh-hccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIG-GCYRLIDVPMSNCINS----GI-KKIYILTQFNSQSLNRHIS-RTYN 162 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~-g~~pLI~~~l~~l~~~----gi-~~I~Iv~~~~~~~l~~~l~-~~~~ 162 (526)
..++.+|+||||.||||+ ..-||.+++|. |+ ++++.+.+++..+ ++ -..+|.+..+.++...++. ..|
T Consensus 103 ~~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y- 177 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDY- 177 (472)
T ss_pred cCceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhh-
Confidence 456889999999999999 67799999999 77 9999998887653 33 2567777787755455443 344
Q ss_pred CCC-C--ccc-CCCeEE-EEecccccCc--CC--Ccc-ccChHHHHHHHHH--HhhhhccCCCCeEEEEcCCeecccCHH
Q 043870 163 LGD-G--MNF-GDGFVE-VLAATQRQGE--SG--KKW-FQGTADAVRQFIW--MFEDAKHRNIENILILSGDHLYRMDYM 230 (526)
Q Consensus 163 ~~~-~--~~~-~~~~v~-vl~~~~~~~~--~~--~~~-~~Gt~~al~~~~~--~i~~~~~~~~e~~lil~gD~l~~~dl~ 230 (526)
++. . +.| ...... ++.....+-. ++ ..| |.|+++-...... .+++...++.+.+.|.+.|.+...-=.
T Consensus 178 ~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~ 257 (472)
T COG4284 178 FGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL 257 (472)
T ss_pred cCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH
Confidence 221 1 111 111111 2111111000 11 234 4566543332222 445444578899999999995433223
Q ss_pred HHHHHHHHcCCcEEEEEEEccCCcCCCceEEE-EcCCCCeeeeeccCCc
Q 043870 231 DFVQHHINSGGDISVCCLPVDESRASDFGLMK-IDETGRIRQFLEKPKG 278 (526)
Q Consensus 231 ~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~-~d~~g~V~~~~eKp~~ 278 (526)
.++.++...+.+.++=....... ..+-|++. .|..-||+.+.+-|..
T Consensus 258 ~~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g~~rllEysev~~~ 305 (472)
T COG4284 258 KFLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDGKLRLLEYSEVPNE 305 (472)
T ss_pred HHHHHHHhcCcceeEEEeecccc-cccceEEEEeCCceEEEEEecCChh
Confidence 56777788888877755443221 23456655 6777889999887764
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=8.3e-05 Score=70.76 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=36.2
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEec-eEECCCCEEC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKIG 484 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~Ig 484 (526)
+.||.|-.+..+ ...+||+-+.||.++.|-..+.+|...-+.+. .-| .||+|+.|.- +.|-.|+.||
T Consensus 155 a~ig~gilldha--tgvvigeTAvvg~~vSilH~Vtlggtgk~~gd---------rhP-~Igd~vliGaGvtILgnV~IG 222 (269)
T KOG4750|consen 155 AKIGKGILLDHA--TGVVIGETAVVGDNVSILHPVTLGGTGKGSGD---------RHP-KIGDNVLIGAGVTILGNVTIG 222 (269)
T ss_pred hhcccceeeccc--cceeecceeEeccceeeecceeeccccccccc---------cCC-cccCCeEEccccEEeCCeeEC
Confidence 345555555321 24566666666666666666666653222111 123 5555555542 3344444444
Q ss_pred CCcEEccC
Q 043870 485 KNVIIANK 492 (526)
Q Consensus 485 ~~~~i~~~ 492 (526)
+|++|+.+
T Consensus 223 egavIaAG 230 (269)
T KOG4750|consen 223 EGAVIAAG 230 (269)
T ss_pred CCcEEecc
Confidence 44444443
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00027 Score=66.93 Aligned_cols=102 Identities=23% Similarity=0.275 Sum_probs=64.8
Q ss_pred eeEECCCCEEcc-eee---eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHh-hCCCcceEECCCCEEe-ceEEC
Q 043870 405 DSIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALL-AEGKVPVGIGRDTKIK-NCIID 478 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~Ig~~~~i~-~~iI~ 478 (526)
...+|.+|+++. +.+ .+..||.++.++++|.|......... .+ .... .++..|+.||+++.|. +++|.
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~-~~-----~~~~~~~~~~~v~IG~~vwIG~~a~Il 140 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDF-VT-----ANIGALVGAGPVTIGEDVWIGAGAVIL 140 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCCh-hh-----cccCCceecCCeEECCCeEEcCccEEC
Confidence 356777777763 332 55678888888888888764222210 00 0111 3446789999999998 68999
Q ss_pred CCCEECCCcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 479 KNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 479 ~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
++++||++++|+..+.+.. +++...+..|..+.+
T Consensus 141 pGV~IG~gavigagsVVtk-dvp~~~iv~G~Pa~v 174 (190)
T COG0110 141 PGVTIGEGAVIGAGSVVTK-DVPPYGIVAGNPARV 174 (190)
T ss_pred CCEEECCCcEEeeCCEEeC-ccCCCeEEeCCcceE
Confidence 9999999999988876665 344444444444433
|
|
| >KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0087 Score=62.06 Aligned_cols=350 Identities=17% Similarity=0.190 Sum_probs=175.9
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc----CCc-EEEEEeccChh-HHHHHhhhcccCC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS----GIK-KIYILTQFNSQ-SLNRHISRTYNLG 164 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~----gi~-~I~Iv~~~~~~-~l~~~l~~~~~~~ 164 (526)
.+...+=|-||.||-|+ ...||.+++|.+.+.++|-++.+.... +++ -.++...++-+ +....+.+.+...
T Consensus 102 ~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~k 178 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGSK 178 (498)
T ss_pred hheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCCc
Confidence 34567779999999999 677999999987668888777766543 333 34555555544 4445554332111
Q ss_pred ------CCcccCCCeEE-EEeccc-ccCcCCCccc-cChHHHHHHH--HHHhhhhccCCCCeEEEEcCCeeccc-CHHHH
Q 043870 165 ------DGMNFGDGFVE-VLAATQ-RQGESGKKWF-QGTADAVRQF--IWMFEDAKHRNIENILILSGDHLYRM-DYMDF 232 (526)
Q Consensus 165 ------~~~~~~~~~v~-vl~~~~-~~~~~~~~~~-~Gt~~al~~~--~~~i~~~~~~~~e~~lil~gD~l~~~-dl~~l 232 (526)
+..+|..-..+ .++... .....-+.|+ -|.++-.... .-.++....+..|.++|.+.|.+-.. |+ .+
T Consensus 179 v~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL-~I 257 (498)
T KOG2638|consen 179 VDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL-NI 257 (498)
T ss_pred eeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH-HH
Confidence 11122211111 122111 1111234675 3443322211 12333333467799999999997644 43 34
Q ss_pred HHHHHHcCCcEEEEEEEccCCcCCCceEEEEcCCCC--eeeeeccCCccccccccccccccccchhhhcCCCceeeeeEE
Q 043870 233 VQHHINSGGDISVCCLPVDESRASDFGLMKIDETGR--IRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIY 310 (526)
Q Consensus 233 l~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d~~g~--V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giy 310 (526)
++...+.+....|=+++... +---|-..++-+|+ +.++..-|.....+ + .|. +.-.+.+|.-.
T Consensus 258 Ln~~i~~~~ey~MEvTdKT~--aDvKgGtLi~y~G~lrlLEiaQVP~ehv~e-F--------kS~----kkFkifNTNNl 322 (498)
T KOG2638|consen 258 LNHVINNNIEYLMEVTDKTR--ADVKGGTLIQYEGKLRLLEIAQVPKEHVDE-F--------KSI----KKFKIFNTNNL 322 (498)
T ss_pred HHHHhcCCCceEEEecccch--hhcccceEEeecCEEEEEEeccCChhHhhh-h--------ccc----eeEEEeccCCe
Confidence 55555667776666654432 21122222223343 44444444431100 0 000 01134555555
Q ss_pred EEcHHHHHHHHHhhCCCCCChhhchHh-------------------hhhc--CCcEEEEEecceeeecCChhhHHHhchh
Q 043870 311 LFKTEVLLKVLRWHYPEANDFGSEVIP-------------------MATK--DFNVQAYLFNDYWEDIGTIKSFFDANLS 369 (526)
Q Consensus 311 if~~~~l~~ll~~~~~~~~d~~~dil~-------------------~li~--~~~V~~~~~~~~w~dIgt~~d~~~An~~ 369 (526)
++.-..++.+++.. .+..+|++ ++++ ...+.+..-...+..+.|-.|++...-.
T Consensus 323 WinLkavKrlve~~-----~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~ 397 (498)
T KOG2638|consen 323 WINLKAVKKLVEEN-----ALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSN 397 (498)
T ss_pred EEehHHHHHHhhcC-----cccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecc
Confidence 66666676676652 12222322 2222 1122222234567788888887766544
Q ss_pred hcCCCCCcccCCCCCcccCCCC--CCCC-eeec--CeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECC
Q 043870 370 LTDKPPKFHFYDPQKPIFTSPR--FLPP-SKIE--KCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGA 444 (526)
Q Consensus 370 ll~~~~~~~~~~~~~~i~~~~~--~~~~-~~i~--~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~ 444 (526)
+.......--.+|+....+.+. +++. .+++ .+++.+ --.. -.+.|-.|-.++..|.+++++++|++-+
T Consensus 398 Ly~ld~Gsl~l~~~r~~~t~P~vkLg~~F~kv~~f~~rfp~----iP~i---leLdhLtVsGdV~FGknV~LkGtViIia 470 (498)
T KOG2638|consen 398 LYDLDNGSLTLSPSRFGPTPPLVKLGSEFKKVEDFLGRFPG----IPDI---LELDHLTVSGDVWFGKNVSLKGTVIIIA 470 (498)
T ss_pred eeeccCCeEEechhhcCCCCCeeecchhhhHHHHHHhcCCC----CCcc---ceeceEEEeccEEeccceEEeeEEEEEe
Confidence 4332221111122211111111 1111 0010 111110 0000 1124667777889999999999998866
Q ss_pred cccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECC
Q 043870 445 DYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGK 485 (526)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~ 485 (526)
+ ...++.|-+|+.+.||+|..|++|-+
T Consensus 471 ~--------------~~~~i~IP~gsVLEn~~v~gn~~ile 497 (498)
T KOG2638|consen 471 N--------------EGDRIDIPDGSVLENKIVSGNLRILE 497 (498)
T ss_pred c--------------CCCeeecCCCCeeecceEeccccccc
Confidence 3 23347899999999999999998854
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00038 Score=79.07 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=60.9
Q ss_pred eeEECCCCEEcceee---eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCC
Q 043870 405 DSIISHGCFLRECSV---EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKN 480 (526)
Q Consensus 405 ~s~Ig~~~~i~~~~v---~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~ 480 (526)
++.||+||.|+...+ ....||++|.|+++|.|.+....+. .... .|+.||+||.|. +|+|.++
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~-~l~~------------g~i~IG~~~~IG~~s~I~~g 178 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERG-RLHT------------GPVTLGRDAFIGTRSTLDID 178 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCC-ceee------------cCcEECCCcEECCCCEEcCC
Confidence 456777777765332 3466888888888888765433221 1111 237888888887 5888888
Q ss_pred CEECCCcEEccCCCcCCccccCCC-eEEccCcEEECC
Q 043870 481 AKIGKNVIIANKDGVEEAERPSDG-FYIRSGITVVLK 516 (526)
Q Consensus 481 ~~Ig~~~~i~~~~~v~~~~~~~~~-~~I~~g~~~i~~ 516 (526)
++||++++|+....+.....+.++ .+.++-...+++
T Consensus 179 ~~Igd~a~vgagS~V~~g~~v~~~~~~~G~PA~~~~~ 215 (695)
T TIGR02353 179 TSIGDGAQLGHGSALQGGQSIPDGERWHGSPAQKTGA 215 (695)
T ss_pred CEECCCCEECCCCEecCCcccCCCCEEEeeCCEEecc
Confidence 888888888877666553333333 333433344333
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00036 Score=79.24 Aligned_cols=76 Identities=14% Similarity=0.280 Sum_probs=45.6
Q ss_pred eeEECCCCEEcceee---eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCC
Q 043870 405 DSIISHGCFLRECSV---EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKN 480 (526)
Q Consensus 405 ~s~Ig~~~~i~~~~v---~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~ 480 (526)
++.||++|.|+...+ ..+.||++|.|+++|.|.....-+.. .. ..++.||++|.|. +|+|.++
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~~~-~~------------~~~v~IG~~~~IG~~a~V~~g 663 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRV-MK------------SDTVTIGDGATLGPGAIVLYG 663 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEeccccccc-cc------------cCCeEECCCCEECCCCEECCC
Confidence 466777777765332 23688888888888888653221111 00 0126677776666 3666666
Q ss_pred CEECCCcEEccCC
Q 043870 481 AKIGKNVIIANKD 493 (526)
Q Consensus 481 ~~Ig~~~~i~~~~ 493 (526)
++||++++|+...
T Consensus 664 ~~IGd~a~Ig~~S 676 (695)
T TIGR02353 664 VVMGEGSVLGPDS 676 (695)
T ss_pred CEECCCCEECCCC
Confidence 6666666666543
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00033 Score=70.50 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=46.4
Q ss_pred eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCcc
Q 043870 420 EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAE 499 (526)
Q Consensus 420 ~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~ 499 (526)
++|.||+++.||.+|+|.++|.+-+...= .+ ..++.++.|..++++.+++||.|++|.+.+.++++.
T Consensus 275 ~~C~Ig~~vvIG~r~~i~~gV~l~~s~il----------~~---~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV 341 (371)
T KOG1322|consen 275 ENCSIGPNVVIGPRVRIEDGVRLQDSTIL----------GA---DYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNV 341 (371)
T ss_pred CccEECCCceECCCcEecCceEEEeeEEE----------cc---ceechhHHHHhhhccccccccCceEEecccEeccce
Confidence 46777777777777777777777763111 11 234555556677777777777777777665444444
Q ss_pred ccCCCeEEcc
Q 043870 500 RPSDGFYIRS 509 (526)
Q Consensus 500 ~~~~~~~I~~ 509 (526)
.+.+.-++.+
T Consensus 342 ~V~d~~~vn~ 351 (371)
T KOG1322|consen 342 IVADEDYVNE 351 (371)
T ss_pred EEeccccccc
Confidence 4444444433
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00081 Score=63.63 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=8.8
Q ss_pred ceEECCCcEECCCCEE
Q 043870 421 HSIVGIRSRLEYGVEL 436 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i 436 (526)
+..+|.++.++.++.+
T Consensus 67 ~~~iG~~~~i~~~~~~ 82 (190)
T COG0110 67 NLTIGDLCFIGVNVVI 82 (190)
T ss_pred ceEECCeeEEcCCcEE
Confidence 4455555555555554
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.003 Score=57.53 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=13.1
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEc
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIA 490 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 490 (526)
+.||.++.|. ++.|+++|.||+++++.
T Consensus 80 ~~Ig~~~~i~~gv~Ig~~~vIgags~V~ 107 (145)
T cd03349 80 VWIGHGATILPGVTIGDGAVIAAGAVVT 107 (145)
T ss_pred CEECCCCEEeCCCEECCCCEECCCCEEc
Confidence 4445555543 34555555555555444
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0013 Score=58.77 Aligned_cols=111 Identities=14% Similarity=0.289 Sum_probs=59.3
Q ss_pred CCCCCCCeee-cCeeEe-eeEECCCCEEcceee-----eceEECCCcEECCCCEEec-------------eEEECCcc-c
Q 043870 389 SPRFLPPSKI-EKCRVQ-DSIISHGCFLRECSV-----EHSIVGIRSRLEYGVELKD-------------TMMMGADY-Y 447 (526)
Q Consensus 389 ~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~~~v-----~~s~ig~~~~I~~~~~i~~-------------~v~~~~~~-~ 447 (526)
+..+.|.+.+ ..+.|. |..|++||++.+..+ ---+||+++.|++.+.|.+ -+++|... .
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvF 87 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVF 87 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceE
Confidence 3455555555 333343 588899999986332 3467888888888777765 23333211 1
Q ss_pred chhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEE
Q 043870 448 QTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYI 507 (526)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I 507 (526)
|-++...+ ..+|++..|. .|.+|++|.+..+|+++.+..+-.+-++.+++.+
T Consensus 88 eVgc~s~A--------~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~v 140 (190)
T KOG4042|consen 88 EVGCKSSA--------KKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSV 140 (190)
T ss_pred Eeechhhh--------hhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceE
Confidence 11110000 2345555555 3666666666666666555555555555444444
|
|
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0017 Score=58.03 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=52.6
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEec-eEECC-----
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDK----- 479 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~----- 479 (526)
..|.+++++- ..|.|-..+.|++||.++....+-++ +.|+.||+|+.|.. ++|-+
T Consensus 9 vkIap~AvVC----vEs~irGdvti~~gcVvHP~a~~iA~---------------aGPI~iGEnniiEEyA~i~n~~~~~ 69 (190)
T KOG4042|consen 9 VKIAPSAVVC----VESDIRGDVTIKEGCVVHPFAVFIAT---------------AGPIYIGENNIIEEYAVIRNRLEPG 69 (190)
T ss_pred eeecCceEEE----EecccccceEecCCcEecceEEEEcc---------------cCCEEEccCchhhhHHHHHhhcCCC
Confidence 3455555553 23445555666666666666555542 45677887777652 22221
Q ss_pred --------CCEECCCcEEcc-----CCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 480 --------NAKIGKNVIIAN-----KDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 480 --------~~~Ig~~~~i~~-----~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
--.||.|-+..- ...++....++..+|++.|+.+ -+++.||+++.
T Consensus 70 ~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~NVieskayvg~gv~v-ssgC~vGA~c~ 127 (190)
T KOG4042|consen 70 AVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDRNVIESKAYVGDGVSV-SSGCSVGAKCT 127 (190)
T ss_pred CccCCCCCeEEEeccceEEeechhhhhhhcCcceEeeeeEecCCcEE-cCCceeccceE
Confidence 123444444321 1234445555556666666554 66666666654
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0028 Score=56.34 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=24.5
Q ss_pred ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCcc
Q 043870 474 NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTI 525 (526)
Q Consensus 474 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~ 525 (526)
+.+||+++.|+++|++. .+.+.....+|.++.||.+.+ +|.+++++++.|+
T Consensus 84 p~hiGdhVFieE~cVVn-AAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~ 139 (184)
T KOG3121|consen 84 PVHIGDHVFIEEECVVN-AAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETL 139 (184)
T ss_pred eeeecceEEEecceEee-hhhheeeeEeccceeEcCceEhhhheeccCCcccCcccc
Confidence 45667777777766653 223333333333333332222 3355555555443
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0019 Score=61.63 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=12.3
Q ss_pred ccCCCeEEccCcE-----EECCCCEECCCcc
Q 043870 500 RPSDGFYIRSGIT-----VVLKNTTIKDGTI 525 (526)
Q Consensus 500 ~~~~~~~I~~g~~-----~i~~~~~i~~gt~ 525 (526)
.+++|++|+.|++ .||+|++|++|++
T Consensus 202 ~Igd~vliGaGvtILgnV~IGegavIaAGsv 232 (269)
T KOG4750|consen 202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSV 232 (269)
T ss_pred cccCCeEEccccEEeCCeeECCCcEEeccce
Confidence 4455555554443 3344444444443
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.006 Score=58.59 Aligned_cols=78 Identities=22% Similarity=0.229 Sum_probs=36.1
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEEC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIG 484 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig 484 (526)
.+||.++.+. -.++|+...+|+++.|.+.+.-++ +.|+..|++. |.++.+++.||
T Consensus 23 ViIG~nS~l~-----~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayiG 78 (277)
T COG4801 23 VIIGKNSMLK-----YGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYIG 78 (277)
T ss_pred EEEcccceee-----eeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEEe
Confidence 5566655554 234444444444444444444332 4555555554 34445555555
Q ss_pred CCcEEccCCCcCCccccCCCeEE
Q 043870 485 KNVIIANKDGVEEAERPSDGFYI 507 (526)
Q Consensus 485 ~~~~i~~~~~v~~~~~~~~~~~I 507 (526)
.++.|...-.+...-.++..+.|
T Consensus 79 E~~sI~gkl~v~gdLdig~dV~I 101 (277)
T COG4801 79 EFSSIKGKLTVIGDLDIGADVII 101 (277)
T ss_pred ccceeeeeEEEecccccccceEE
Confidence 55554444333333333333333
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0042 Score=59.66 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=50.4
Q ss_pred eEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEec-eEECCCCEE
Q 043870 406 SIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKI 483 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~I 483 (526)
.++++...+++ .+|...+++.+++|+.+|.+...++.+++ +.||+.+.|.. .++..+-.|
T Consensus 34 ~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~gdLdi 95 (277)
T COG4801 34 GVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVIGDLDI 95 (277)
T ss_pred eeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEeccccc
Confidence 34444444443 44456778888888888888888888877 78888888875 677778888
Q ss_pred CCCcEEccC
Q 043870 484 GKNVIIANK 492 (526)
Q Consensus 484 g~~~~i~~~ 492 (526)
|++|.|.++
T Consensus 96 g~dV~Iegg 104 (277)
T COG4801 96 GADVIIEGG 104 (277)
T ss_pred ccceEEecC
Confidence 888888765
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.009 Score=40.44 Aligned_cols=9 Identities=11% Similarity=0.412 Sum_probs=3.6
Q ss_pred EECCCCEEc
Q 043870 407 IISHGCFLR 415 (526)
Q Consensus 407 ~Ig~~~~i~ 415 (526)
.|+++|+|+
T Consensus 3 ~Ig~~~~i~ 11 (36)
T PF00132_consen 3 VIGDNVIIG 11 (36)
T ss_dssp EEETTEEEE
T ss_pred EEcCCCEEC
Confidence 334444443
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.37 Score=41.72 Aligned_cols=99 Identities=14% Similarity=0.101 Sum_probs=67.0
Q ss_pred ceeeCCcchhHHHHHHHHHhcC--CcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccCh
Q 043870 117 AVPIGGCYRLIDVPMSNCINSG--IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGT 194 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt 194 (526)
++|..|+.+++.++++.+.+.+ ..+++|+.+...+...+.+.+.... ... +....... ..|.
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~---------~~g~ 65 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPR-VIRVINEE---------NQGL 65 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCC-eEEEEecC---------CCCh
Confidence 3566666689999999999987 7899999998777767766544311 001 22222111 2578
Q ss_pred HHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCH-HHHHHHHH
Q 043870 195 ADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDY-MDFVQHHI 237 (526)
Q Consensus 195 ~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl-~~ll~~h~ 237 (526)
+.++..+...... +.++++.+|..+..+. ..++..+.
T Consensus 66 ~~~~~~~~~~~~~------d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 66 AAARNAGLKAARG------EYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHHHHHHhcC------CEEEEECCCCccCccHHHHHHHHHh
Confidence 8888888777643 8899999999988884 44434433
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.17 Score=47.90 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChHHHHHHHHHH
Q 043870 125 RLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWM 204 (526)
Q Consensus 125 pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~ 204 (526)
|||+|+++.+..+++.+++|+++. +.+.+++. .+ + +.++.. .. .|...+++.+...
T Consensus 31 ~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~-~~--------~---v~~i~~--~~--------~G~~~si~~al~~ 86 (195)
T TIGR03552 31 AMLRDVITALRGAGAGAVLVVSPD--PALLEAAR-NL--------G---APVLRD--PG--------PGLNNALNAALAE 86 (195)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHH-hc--------C---CEEEec--CC--------CCHHHHHHHHHHH
Confidence 899999999999988888888874 33334332 11 1 333332 11 2889999999877
Q ss_pred hhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHH
Q 043870 205 FEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHI 237 (526)
Q Consensus 205 i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~ 237 (526)
+.. ..+.++++.||+ +... .+.++++.+.
T Consensus 87 ~~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 87 ARE----PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred hhc----cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 642 235799999999 4444 5778887653
|
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.058 Score=36.36 Aligned_cols=6 Identities=33% Similarity=1.248 Sum_probs=1.8
Q ss_pred CCCCEE
Q 043870 409 SHGCFL 414 (526)
Q Consensus 409 g~~~~i 414 (526)
|++|+|
T Consensus 5 G~~~~i 10 (34)
T PF14602_consen 5 GDNCFI 10 (34)
T ss_dssp -TTEEE
T ss_pred CCCEEE
Confidence 333333
|
... |
| >KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.36 Score=51.52 Aligned_cols=128 Identities=23% Similarity=0.251 Sum_probs=70.7
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcc--hhHHHHHHHHHhc----------C--CcEEEEEeccChhHHHH
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCY--RLIDVPMSNCINS----------G--IKKIYILTQFNSQSLNR 155 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~--pLI~~~l~~l~~~----------g--i~~I~Iv~~~~~~~l~~ 155 (526)
..+..++++|||.|||++ ...||.+.|++-.. .++++..+.+... | |.=++.+.....+...+
T Consensus 95 ~~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~ 171 (477)
T KOG2388|consen 95 EGKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLE 171 (477)
T ss_pred cCcceEEEeccCceeeec---cCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHh
Confidence 456789999999999999 77899999998530 4777776664421 1 22333444466667778
Q ss_pred HhhhcccCCCC---ccc-CCCeEEEEecccccCc-------CCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe
Q 043870 156 HISRTYNLGDG---MNF-GDGFVEVLAATQRQGE-------SGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH 223 (526)
Q Consensus 156 ~l~~~~~~~~~---~~~-~~~~v~vl~~~~~~~~-------~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~ 223 (526)
|+...-.|+.. +.| ..+.+. ..+..+- .-..-+.|+++..+.+...+++...++...+-+.+-|.
T Consensus 172 ~f~~~~~FGl~~~qv~~f~Q~~l~---c~~~~gk~~le~k~~~a~ap~gngg~y~ai~~~l~dm~~rgi~~~hiy~Vdn 247 (477)
T KOG2388|consen 172 YFESHKYFGLKPEQVTFFQQGKLP---CLDLDGKFILEQKNSLAAAPDGNGGLYRAIKDQLEDMAARGIFYDHIYCVDN 247 (477)
T ss_pred HHhhcCCCCCChhHeeeeeccccc---ccccCCceeccCccchhcCCCCCcHHHHHHHhhhhHHHhhcccEEEEEEecc
Confidence 88754334432 111 111111 1111100 00012367766666665666543334555555555565
|
|
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=93.37 E-value=1.5 Score=38.90 Aligned_cols=109 Identities=13% Similarity=0.152 Sum_probs=70.7
Q ss_pred ceeeCCcchhHHHHHHHHHhc--CCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccCh
Q 043870 117 AVPIGGCYRLIDVPMSNCINS--GIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGT 194 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~--gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt 194 (526)
++|..++...|..+|+.+.+. ...+|+|+-+.......+.+.+... ....+.++...+. .|.
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-------~~~~i~~i~~~~n---------~g~ 66 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-------SDPNIRYIRNPEN---------LGF 66 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-------CSTTEEEEEHCCC---------SHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-------ccccccccccccc---------ccc
Confidence 356666656888999988876 4567877776554444444443221 0112666665443 477
Q ss_pred HHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEEEE
Q 043870 195 ADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 195 ~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti~~ 247 (526)
+.++..+...... +.++++..|.++..+ +..+++.+.+.+.++.+..
T Consensus 67 ~~~~n~~~~~a~~------~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 67 SAARNRGIKHAKG------EYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp HHHHHHHHHH--S------SEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cccccccccccce------eEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 8888888777764 799999999988888 7888888888677655443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=88.94 E-value=1.7 Score=46.49 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=48.1
Q ss_pred hcCCcEEEEEec-ceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCCCeee-cCeeEeeeEECCCCEEcc-
Q 043870 340 TKDFNVQAYLFN-DYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLRE- 416 (526)
Q Consensus 340 i~~~~V~~~~~~-~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~- 416 (526)
+++..+.+.... +.++-+||..+|++--..- .. +. +. ...+...... .+..+ .++.|.+|++..++.+++
T Consensus 224 Lr~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~-~~---l~-~~-~~~~~~~~~~-~~~~~~~~~~VinSil~~~~~vg~~ 296 (414)
T PF07959_consen 224 LRGTPLNVVPLPNGKFYHFGTSREYLEHLTSD-SE---LG-IM-RRKFSHSPAT-TPSDSEASSCVINSILEGGVSVGPG 296 (414)
T ss_pred hhhccccccccCCceEEEecCCHHHHHhhccC-cc---cc-cc-eeeeeccccc-cccccCCCeeEEEeEecCCceECCC
Confidence 445566665554 6788889888766543222 10 00 00 0001111111 11112 344555666666666664
Q ss_pred eeeeceEECCCcEECCCCEEeceEEE
Q 043870 417 CSVEHSIVGIRSRLEYGVELKDTMMM 442 (526)
Q Consensus 417 ~~v~~s~ig~~~~I~~~~~i~~~v~~ 442 (526)
+.|++|.|+.++.||++|.|.+.-+.
T Consensus 297 svIe~s~l~~~~~IG~~cIisGv~~~ 322 (414)
T PF07959_consen 297 SVIEHSHLGGPWSIGSNCIISGVDIN 322 (414)
T ss_pred CEEEeeecCCCCEECCCCEEECCccc
Confidence 34467777777777777777664433
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=88.54 E-value=8.4 Score=34.09 Aligned_cols=99 Identities=7% Similarity=0.084 Sum_probs=65.2
Q ss_pred ceeeCCcchhHHHHHHHHHhcC--CcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccCh
Q 043870 117 AVPIGGCYRLIDVPMSNCINSG--IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGT 194 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt 194 (526)
++|.-++..++..+++.+.+.- ..+++|+.........+.+.+.+. .+.++..... .|.
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----------~~~~~~~~~~---------~g~ 62 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----------EVRLIRNGEN---------LGF 62 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----------CeEEEecCCC---------cCh
Confidence 3566666578899999998763 567888777655555555543321 1444432222 578
Q ss_pred HHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcC
Q 043870 195 ADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSG 240 (526)
Q Consensus 195 ~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ 240 (526)
+.++..++...+ .+.++++..|.++..+ +..+++.+.+..
T Consensus 63 ~~a~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 63 GAGNNQGIREAK------GDYVLLLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred HHHhhHHHhhCC------CCEEEEECCCcEECccHHHHHHHHHHhCC
Confidence 888888877664 3889999999988777 666666555443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd06423 CESA_like CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=85.26 E-value=12 Score=32.79 Aligned_cols=100 Identities=13% Similarity=0.110 Sum_probs=61.1
Q ss_pred eeeCCcchhHHHHHHHHHhcC--CcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChH
Q 043870 118 VPIGGCYRLIDVPMSNCINSG--IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTA 195 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~ 195 (526)
+|.-++...|..+|+.+.+.. ..+++|+-+.......+.+.+.... . . ..+.++..... .|.+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~-~----~-~~~~~~~~~~~---------~g~~ 67 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAAL-Y----I-RRVLVVRDKEN---------GGKA 67 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhcc-c----c-ceEEEEEeccc---------CCch
Confidence 566666468888899988764 4578777665554444444432100 0 0 11333332222 5777
Q ss_pred HHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHH
Q 043870 196 DAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHIN 238 (526)
Q Consensus 196 ~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~ 238 (526)
.++..++.... .+.++++.+|.+...+ +..++..+.+
T Consensus 68 ~~~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~ 105 (180)
T cd06423 68 GALNAGLRHAK------GDIVVVLDADTILEPDALKRLVVPFFA 105 (180)
T ss_pred HHHHHHHHhcC------CCEEEEECCCCCcChHHHHHHHHHhcc
Confidence 88887776664 3889999999988887 5566455544
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the |
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Probab=84.31 E-value=12 Score=34.06 Aligned_cols=107 Identities=11% Similarity=0.089 Sum_probs=64.6
Q ss_pred eeeCCcchhHHHHHHHHHhc----CCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccC
Q 043870 118 VPIGGCYRLIDVPMSNCINS----GIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQG 193 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~----gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~G 193 (526)
+|..+....|..+|+.+.+. ...+|+|+-+...+...+.+.+.. . ++. .+.++..... .|
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~-~----~~~--~~~~~~~~~n---------~G 66 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELA-A----RVP--RVRVIRLSRN---------FG 66 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHH-H----hCC--CeEEEEccCC---------CC
Confidence 44555535667777777766 367788887655444444443211 0 111 1334443333 57
Q ss_pred hHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEEE
Q 043870 194 TADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISVC 246 (526)
Q Consensus 194 t~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti~ 246 (526)
-+.++..+...... +.++++.+|.....+ +..++......+.++.+.
T Consensus 67 ~~~a~n~g~~~a~g------d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 67 KGAAVRAGFKAARG------DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred ccHHHHHHHHHhcC------CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 77888777766542 889999999977777 677887655666665443
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex |
| >cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan | Back alignment and domain information |
|---|
Probab=83.87 E-value=16 Score=34.81 Aligned_cols=97 Identities=12% Similarity=0.186 Sum_probs=63.5
Q ss_pred ceeeCCcc-hhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChH
Q 043870 117 AVPIGGCY-RLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTA 195 (526)
Q Consensus 117 LlpV~g~~-pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~ 195 (526)
++|.-+.. ..|..+|+.+.+....+|+||.....+...+.+...... ..+.++... . .|-.
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~--------~~~~v~~~~-~---------~g~~ 66 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKY--------GGIFVITVP-H---------PGKR 66 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccC--------CcEEEEecC-C---------CChH
Confidence 35666665 688889999887666788888877666655555322210 113444321 1 4667
Q ss_pred HHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHH
Q 043870 196 DAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHI 237 (526)
Q Consensus 196 ~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~ 237 (526)
.++..++...+ .+.++++.+|..+..+ +..+++.+.
T Consensus 67 ~a~n~g~~~a~------~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 67 RALAEGIRHVT------TDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHHHhC------CCEEEEECCCceeChhHHHHHHHhcc
Confidence 77777665543 3889999999999888 666776654
|
Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate. |
| >cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation | Back alignment and domain information |
|---|
Probab=82.17 E-value=16 Score=34.45 Aligned_cols=109 Identities=14% Similarity=0.156 Sum_probs=63.5
Q ss_pred eeeCCcchhHHHHHHHHHhc------CCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccc
Q 043870 118 VPIGGCYRLIDVPMSNCINS------GIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWF 191 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~------gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~ 191 (526)
+|.-+....|..+++.+.+. ..-+|+||-+...+...+.+.+ +.- .++. .+.++.....
T Consensus 3 ip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~-~~~----~~~~-~i~~i~~~~n--------- 67 (211)
T cd04188 3 IPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARK-LAR----KNPA-LIRVLTLPKN--------- 67 (211)
T ss_pred EcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHH-HHH----hCCC-cEEEEEcccC---------
Confidence 45555435666667776654 2347777755444333333332 100 0011 1344433222
Q ss_pred cChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEEEE
Q 043870 192 QGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 192 ~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti~~ 247 (526)
.|-+.++..+...... +.++++.+|..+..+ +..+++...+.+.++++..
T Consensus 68 ~G~~~a~~~g~~~a~g------d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 68 RGKGGAVRAGMLAARG------DYILFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred CCcHHHHHHHHHHhcC------CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 5888888888776653 889999999988776 7777777556666655543
|
UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. |
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
Probab=81.85 E-value=14 Score=35.43 Aligned_cols=106 Identities=11% Similarity=0.160 Sum_probs=64.4
Q ss_pred ceeeCCcchhHHHHHHHHHhcCC----cEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCcccc
Q 043870 117 AVPIGGCYRLIDVPMSNCINSGI----KKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQ 192 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~gi----~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~ 192 (526)
++|..++.+.+..+++.+.+... -+|+|+-+...+...+.+.... .. ...+.++... . .
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~---~~----~~~v~~i~~~-~---------~ 67 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYA---AK----DPRIRLIDNP-K---------R 67 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHH---hc----CCeEEEEeCC-C---------C
Confidence 34555654678888888887644 3788887665555455544221 00 1114444321 1 3
Q ss_pred ChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEE
Q 043870 193 GTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISV 245 (526)
Q Consensus 193 Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti 245 (526)
|-+.++..+++... .+.++++.+|.....+ +.++++.+.+.+.++..
T Consensus 68 ~~~~a~N~g~~~a~------~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~ 115 (249)
T cd02525 68 IQSAGLNIGIRNSR------GDIIIRVDAHAVYPKDYILELVEALKRTGADNVG 115 (249)
T ss_pred CchHHHHHHHHHhC------CCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEe
Confidence 45566777766554 3889999999988777 67788766655555443
|
Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. |
| >cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily | Back alignment and domain information |
|---|
Probab=80.98 E-value=27 Score=33.70 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=60.0
Q ss_pred cceeeCCcchhHHHHHHHHHhcCC----cEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccc
Q 043870 116 PAVPIGGCYRLIDVPMSNCINSGI----KKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWF 191 (526)
Q Consensus 116 ~LlpV~g~~pLI~~~l~~l~~~gi----~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~ 191 (526)
-++|..|....|..+|+.+.+... -+++|+.....+...+.+. .+. . ..+.++.....
T Consensus 33 Vvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~~--~------~~v~~i~~~~~--------- 94 (251)
T cd06439 33 IIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAR-EYA--D------KGVKLLRFPER--------- 94 (251)
T ss_pred EEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHH-HHh--h------CcEEEEEcCCC---------
Confidence 445555554567777777765432 2677777655544444443 221 0 01444443222
Q ss_pred cChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHH
Q 043870 192 QGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHIN 238 (526)
Q Consensus 192 ~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~ 238 (526)
.|-+.++..+...... +.++++.+|.+...+ +.++++...+
T Consensus 95 ~g~~~a~n~gi~~a~~------d~i~~lD~D~~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 95 RGKAAALNRALALATG------EIVVFTDANALLDPDALRLLVRHFAD 136 (251)
T ss_pred CChHHHHHHHHHHcCC------CEEEEEccccCcCHHHHHHHHHHhcC
Confidence 4777888877766543 889999999988877 6777766543
|
This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 526 | ||||
| 1yp2_A | 451 | Crystal Structure Of Potato Tuber Adp-Glucose Pyrop | 1e-143 | ||
| 3brk_X | 420 | Crystal Structure Of Adp-Glucose Pyrophosphorylase | 3e-52 | ||
| 1lvw_A | 295 | Crystal Structure Of Glucose-1-phosphate Thymidylyl | 1e-04 | ||
| 3hl3_A | 269 | 2.76 Angstrom Crystal Structure Of A Putative Gluco | 2e-04 | ||
| 1mp3_A | 292 | L89t Variant Of S. Enterica Rmla Length = 292 | 7e-04 |
| >pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose Pyrophosphorylase Length = 451 | Back alignment and structure |
|
| >pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From Agrobacterium Tumefaciens Length = 420 | Back alignment and structure |
|
| >pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295 | Back alignment and structure |
|
| >pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative Glucose-1-Phosphate Thymidylyltransferase From Bacillus Anthracis In Complex With A Sucrose. Length = 269 | Back alignment and structure |
|
| >pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 526 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 0.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 0.0 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 4e-20 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 3e-19 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 5e-17 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 6e-08 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 3e-06 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 6e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 6e-05 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 6e-05 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 7e-05 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 8e-05 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 2e-04 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 5e-04 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 5e-04 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 | Back alignment and structure |
|---|
Score = 712 bits (1839), Expect = 0.0
Identities = 253/456 (55%), Positives = 325/456 (71%), Gaps = 10/456 (2%)
Query: 76 MTFQAPVFEKPEADPKA---VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMS 132
M + DP A V IILGGGAGTRL+PLT +RAKPAVP+G YRLID+P+S
Sbjct: 1 MAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVS 60
Query: 133 NCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQ 192
NC+NS I KIY+LTQFNS SLNRH+SR Y G +GFVEVLAA Q WFQ
Sbjct: 61 NCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS--PENPDWFQ 118
Query: 193 GTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDE 252
GTADAVRQ++W+FE+ + LIL+GDHLYRMDY F+Q H + DI+V LP+DE
Sbjct: 119 GTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDE 175
Query: 253 SRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLF 312
RA+ FGLMKIDE GRI +F EKP+GE L++M++DTT LGL + A+ P+IASMGIY+
Sbjct: 176 KRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVI 235
Query: 313 KTEVLLKVLRWHYPEANDFGSEVIPMATK-DFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371
+V+L +LR +P ANDFGSEVIP AT VQAYL++ YWEDIGTI++F++ANL +T
Sbjct: 236 SKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 295
Query: 372 DKP-PKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRL 430
KP P F FYD PI+T PR+LPPSK+ V DS+I GC ++ C + HS+VG+RS +
Sbjct: 296 KKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCI 355
Query: 431 EYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIA 490
G ++D+++MGADYY+T+A+ L A+G VP+GIG++ IK IIDKNA+IG NV I
Sbjct: 356 SEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKII 415
Query: 491 NKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526
NKD V+EA R +DG++I+SGI V+K+ I G II
Sbjct: 416 NKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 575 bits (1484), Expect = 0.0
Identities = 138/456 (30%), Positives = 226/456 (49%), Gaps = 66/456 (14%)
Query: 87 EADPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILT 146
+ + + +L GG G+RL LT RRAKPAV GG R+ID +SN +NSGI++I + T
Sbjct: 7 QPLARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVAT 66
Query: 147 QFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFE 206
Q+ + SL RH+ R ++ + ++L A+QR E+ W++GTADAV Q I + E
Sbjct: 67 QYKAHSLIRHLQRGWDF--FRPERNESFDILPASQRVSETQ--WYEGTADAVYQNIDIIE 122
Query: 207 DAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDET 266
E ++IL+GDH+Y+MDY +Q H++SG D+++ CL V A+ FG+M ++E
Sbjct: 123 PY---APEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEK 179
Query: 267 GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP 326
I F+EKP + + +ASMGIY+F T+ L++ +R
Sbjct: 180 DEIIDFIEKPADP--PGIPGNEG------------FALASMGIYVFHTKFLMEAVRRDAA 225
Query: 327 E---ANDFGSEVIPMATKDFNVQAYLFND-----------YWEDIGTIKSFFDANLSLTD 372
+ + DFG ++IP + A+ F D YW D+GTI +++ AN+ LTD
Sbjct: 226 DPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTD 285
Query: 373 KPPKFHFYDPQKPIFTSPRFLPPSKI------EKCRVQDSIISHGCFLRECSVEHSIVGI 426
P YD PI+T PP+K + S++S C + ++ S++
Sbjct: 286 VVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFT 345
Query: 427 RSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKN 486
R L++ +++ + V IGR ++ N +ID I +
Sbjct: 346 GVRANSYSRLENAVVLPS-------------------VKIGRHAQLSNVVIDHGVVIPEG 386
Query: 487 VIIANKDGVEEAERPSDGFYI-RSGITVVLKNTTIK 521
+I+ +D +A+R F SGI ++ ++ K
Sbjct: 387 LIV-GEDPELDAKR----FRRTESGICLITQSMIDK 417
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 4e-20
Identities = 41/283 (14%), Positives = 87/283 (30%), Gaps = 79/283 (27%)
Query: 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMS----NCINSGIKKIYILT 146
KAV IL G GTRL + KP V +GG + ++ + + I+
Sbjct: 20 KAV---ILAAGLGTRLGGVP----KPLVRVGG------CEIILRTMKLLSPHVSEFIIVA 66
Query: 147 QFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFE 206
+ ++ D + E G ++
Sbjct: 67 SRYADDIDAF------------LKDKGFNYKIVRHDRPEKG------NGYSLLV------ 102
Query: 207 DAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDET 266
AK+ + ++ GDH+Y F++ + G I+ + +++++
Sbjct: 103 -AKNHVEDRFILTMGDHVYSQQ---FIEKAVRGEGVIAD--REPRFVDIGEATKIRVED- 155
Query: 267 GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHY- 325
GR+ + + + + +DT G ++ + +
Sbjct: 156 GRVAKIGKDLREFDC----VDT-------------------GFFVLDDSIF------EHA 186
Query: 326 PEANDFGSEVIPMATKDFNVQA-YLFNDYWEDIGTIKSFFDAN 367
+ D + K + Y+ + W D+ T + AN
Sbjct: 187 EKLRDREEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRAN 229
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 3e-19
Identities = 84/452 (18%), Positives = 151/452 (33%), Gaps = 111/452 (24%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPM-----SNCINSGIKKIYILTQFNS 150
IL G+G RL P+T R K VPI P+ GI+ I ++ +
Sbjct: 4 FILAAGSGERLEPITHTRPKAFVPILS------KPLIEYQIEYLRKCGIRDITVIVSSKN 57
Query: 151 QSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKH 210
+ F E+ TQ+ +GT A+ AK
Sbjct: 58 KEY---------------FEKKLKEISIVTQKDD------IKGTGAAILS-------AKF 89
Query: 211 RNIENILILSGDHLY--RMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGR 268
+ LI+ GD + + + + + ++ + V D+G++ +D
Sbjct: 90 N--DEALIIYGDLFFSNEKEICNIITLK-----ENAIIGVKVSN--PKDYGVLVLDNQNN 140
Query: 269 IRQFLEKPKG--ENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP 326
+ + +EKP+ NL + GIY ++ + L
Sbjct: 141 LSKIIEKPEIPPSNL-----------------------INAGIYKLNSD-IFTYL----D 172
Query: 327 EANDFGS------EVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFY 380
+ + + I + KD V+ + YW DIG + D N F
Sbjct: 173 KISISERGELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVN---KWALDNLVFS 229
Query: 381 DPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSV--EHSIVGIRSRLEYGVELKD 438
+ + + IE+ D+ I G ++ + S +G S L L +
Sbjct: 230 QNLGNVEDNVKIKGKVIIEE----DAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVE 285
Query: 439 TMMMGADYYQTEAEI-AALLAEG-KVPVGIGRDTKIKNCIIDKNAKIGKNVIIAN-KDGV 495
+GA E+ +++ EG K+P + + + +I ++ G +IAN +
Sbjct: 286 KNKIGAS-----VEVKESVIMEGSKIPHL----SYVGDSVIAEDVNFGAGTLIANLRFDE 336
Query: 496 EEAERPSDGFYIRSGITVVLKN-TTIKDGTII 526
+E + G I SG K I
Sbjct: 337 KEVKVNVKGKRISSG---RRKLGAFIGGHVRT 365
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 5e-17
Identities = 31/285 (10%), Positives = 76/285 (26%), Gaps = 67/285 (23%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
IIL G GTRL PLT K V + LI+ + GI I I+ + + +
Sbjct: 29 IILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQFDY 87
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ +G V ++ K +
Sbjct: 88 LKEK---------YGVRLVFNDKYADY----------NNFYSLYL-------VKEELANS 121
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEK 275
+I + ++L++ + + + V ++ + + +++ +
Sbjct: 122 YVIDADNYLFKNMFRNDLTRSTYFS---------VYREDCTNEWFLVYGDDYKVQDIIVD 172
Query: 276 PKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVL------LKVLRWHYPEAN 329
K G+ + + +
Sbjct: 173 SKAGR------------------------ILSGVSFWDAPTAEKIVSFIDKAYVSGEFVD 208
Query: 330 DFGSEVIPMATKDFNVQAYLFND-YWEDIGTIKSFFDANLSLTDK 373
+ ++ K+ +V +I +++ + L ++
Sbjct: 209 LYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILKNE 253
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 6e-08
Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 31/153 (20%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
+I+ GG GTR+ + KP + + G LID +S + S + I+I T N+
Sbjct: 4 LIMAGGKGTRMGGVE----KPLIKLCG-RCLIDYVVSPLLKSKVNNIFIATSPNTPKTKE 58
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ + + +G + + + E
Sbjct: 59 Y------------INSAYKDYKNIVVIDTS-----GKGYIEDLNE-------CIGYFSEP 94
Query: 216 ILILSGD--HLYRMDYMDFVQHHINSGGDISVC 246
L++S D +L V +
Sbjct: 95 FLVVSSDLINLKSKIINSIVDYFYCIKAKTPDV 127
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Length = 303 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 3e-06
Identities = 45/302 (14%), Positives = 87/302 (28%), Gaps = 54/302 (17%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYR-LIDVPMSNCINSGIKKIYILTQFNSQSLN 154
+L G G+R K IG ++D + + I +G ++ + + + +
Sbjct: 9 FVLAAGMGSRY-----GSLKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSFEKEF 63
Query: 155 RHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQ------GTADAVRQFIWMFEDA 208
R + G VE++ + G + GT AV
Sbjct: 64 REK-----ILTKYE-GRIPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLM-------G 110
Query: 209 KHRNIENILILSGDHLY----RMDYMDFVQHHINSGGDISVCCLPVD----ESRASDFGL 260
+ E +++ D Y + G+ + V ES G+
Sbjct: 111 RDAIREPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGV 170
Query: 261 MKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKV 320
++DE + +E+ E G A + P SM ++ F +
Sbjct: 171 CQVDEKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAP--VSMNMWGFTPDY-FDY 227
Query: 321 LRWHYP-----EANDFGSE-VIPMATKDF------NVQAYLFNDYW------EDIGTIKS 362
+ + SE IP D +V+ W +D + +
Sbjct: 228 SEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVA 287
Query: 363 FF 364
Sbjct: 288 KL 289
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 6e-06
Identities = 46/204 (22%), Positives = 69/204 (33%), Gaps = 33/204 (16%)
Query: 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVP-----MSNCINSGIKKIYIL 145
KAV IL GG GTRL T + KP V IGG P M GIK I
Sbjct: 4 KAV---ILAGGLGTRLSEETIVKPKPMVEIGG------KPILWHIMKMYSVHGIKDFIIC 54
Query: 146 TQFNSQSLNRHIS--RTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQ--- 200
+ + + + + + + +EV + + W D
Sbjct: 55 CGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVH------HKRVEPWNVTLVDTGDSSMT 108
Query: 201 --FIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDF 258
+ + + E L GD + +D + H G ++ F
Sbjct: 109 GGRLKRVAEYVKDD-EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATF----PPGRF 163
Query: 259 GLMKIDETGRIRQFLEKPKGENLR 282
G + I G++R F EKPKG+
Sbjct: 164 GALDIQA-GQVRSFQEKPKGDGAM 186
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 2e-05
Identities = 56/373 (15%), Positives = 92/373 (24%), Gaps = 136/373 (36%)
Query: 123 CYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQR 182
C + D+P S I I + +S T L L
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKD--------AVSGTLRL----------FWTL---LS 73
Query: 183 QGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSG-----DHLYRMDYMDFVQHHI 237
+ E + F + ++ K + ++ D LY D F ++++
Sbjct: 74 KQEEMVQKFVEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNV 131
Query: 238 NSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQE 297
+ R++ +L+ LR AL E
Sbjct: 132 S-----------------------------RLQPYLK------LR------QAL----LE 146
Query: 298 ARNFPYIA--SM---GIYLFKTEVLLKVLRWHYPEANDFGSEVIPMATKDFNVQAYL-FN 351
R + + G KT V L V + VQ + F
Sbjct: 147 LRPAKNVLIDGVLGSG----KTWVALDVCL-------------------SYKVQCKMDFK 183
Query: 352 DYWEDIGTIKSFFD-----ANLSLTDKPPKFHFYDPQKPIFTSP--------RFLPPSKI 398
+W ++ S L P D I R L
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 399 EKC-----RVQDS-II---SHGC-FL---RECSVEHSIVGIRSRLEYGVELKDTMMMGAD 445
E C VQ++ + C L R V + + T+
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL----- 298
Query: 446 YYQTEAEIAALLA 458
T E+ +LL
Sbjct: 299 ---TPDEVKSLLL 308
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* Length = 269 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 28/86 (32%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPM-----SNCINSGIKKIYILT---- 146
IIL GG G+RL+P+T K +P+ PM I I I+T
Sbjct: 28 IILAGGTGSRLYPITKVTNKHLLPV---G---RYPMIYHAVYKLKQCDITDIMIITGKEH 81
Query: 147 --QFNSQSLNRHISRTYNLGDGMNFG 170
S LG G FG
Sbjct: 82 MGDV--VSF---------LGSGQEFG 96
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 Length = 296 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 6e-05
Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 28/86 (32%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPM-----SNCINSGIKKIYILT---- 146
IIL GG+GTRL P+T +K +PI Y D PM S + +GI++I I+T
Sbjct: 7 IILAGGSGTRLHPITRGVSKQLLPI---Y---DKPMIYYPLSVLMLAGIREILIITTPED 60
Query: 147 --QFNSQSLNRHISRTYNLGDGMNFG 170
F Q L LGDG FG
Sbjct: 61 KGYF--QRL---------LGDGSEFG 75
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... Length = 293 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 7e-05
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 28/86 (32%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPM-----SNCINSGIKKIYILT---- 146
IIL GG+GTRL P T +K +P+ Y D PM S + +GI++I I++
Sbjct: 6 IILAGGSGTRLHPATLAISKQLLPV---Y---DKPMIYYPLSTLMLAGIREILIISTPQD 59
Query: 147 --QFNSQSLNRHISRTYNLGDGMNFG 170
+F Q L LGDG N+G
Sbjct: 60 TPRF--QQL---------LGDGSNWG 74
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 Length = 295 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 8e-05
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 28/86 (32%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPM-----SNCINSGIKKIYILT---- 146
I+L GG+GTRL+P+T +K +PI Y D PM S + +GI+ I I++
Sbjct: 7 IVLAGGSGTRLYPITRAVSKQLLPI---Y---DKPMIYYPLSVLMLAGIRDILIISTPRD 60
Query: 147 --QFNSQSLNRHISRTYNLGDGMNFG 170
+ + L LGDG FG
Sbjct: 61 LPLY--RDL---------LGDGSQFG 75
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255 | Back alignment and structure |
|---|
Score = 41.9 bits (97), Expect = 2e-04
Identities = 21/191 (10%), Positives = 49/191 (25%), Gaps = 19/191 (9%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
+I G +R F + K + G L + +++ ++ N
Sbjct: 3 VIPMAGMSSRFFKAGYTQPKYMLEAHGQT-LFEHSVNSFAAYFASTPFLFIVRNVYDTAV 61
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ F + +G A+ V + +
Sbjct: 62 FVREKATQLGIKQFYIAELH-------------TETRGQAETVTLGLEELAKQGVDYQGS 108
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEK 275
I + + D + H + ++ F + + ++ Q EK
Sbjct: 109 ITVFNIDTFRPNFVFPDISQHSDGYLEVFQGGGDNW-----SFAKPEHAGSTKVIQTAEK 163
Query: 276 PKGENLRSMQI 286
+L S +
Sbjct: 164 NPISDLCSTGL 174
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 464 VGIGRDTKI-KNCIIDKNAKIGKNVIIANKDGVEEAERPS--DGFYIRSGITVVLKNTTI 520
I + I K I + +G+ ++ D + + + IR+ V+ +T I
Sbjct: 33 CIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTE-NVIYGDTII 91
Query: 521 KDGTII 526
D
Sbjct: 92 GDNFQT 97
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 13/54 (24%)
Query: 473 KNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526
K+ II + IG+NV I + YI G ++ N IK G+ I
Sbjct: 7 KSAIIKEGVIIGENVTIED------------NVYIDYG-CIIRDNVHIKKGSFI 47
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 526 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 100.0 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 100.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 100.0 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 100.0 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 100.0 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 100.0 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 100.0 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 100.0 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 100.0 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 99.98 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 99.97 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 99.97 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 99.97 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 99.97 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 99.97 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 99.97 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.96 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.95 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.95 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.94 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.94 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.91 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.91 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.9 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.89 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 99.89 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.88 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.87 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.83 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 99.83 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 99.83 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.83 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.82 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.81 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 99.81 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 99.8 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 99.78 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 99.78 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.76 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 99.75 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 99.74 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 99.73 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 99.72 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.7 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.69 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 99.68 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 99.63 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 99.62 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 99.6 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 99.58 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.58 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 99.51 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.51 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 99.49 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.45 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.44 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.43 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.43 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.43 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.42 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.42 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.42 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.42 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.41 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 99.4 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.38 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.38 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 99.37 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.34 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.33 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.33 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.32 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.31 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.3 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.29 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.29 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.28 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.27 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.27 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.27 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.24 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.23 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.23 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.23 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.22 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.22 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.21 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.21 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.2 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.18 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.17 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 99.17 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.16 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 99.16 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.16 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.16 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.16 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.12 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.1 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.1 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 99.1 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 99.1 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.09 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.09 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.07 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.06 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.06 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 99.04 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.02 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.02 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.01 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.0 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.98 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 98.97 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.96 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 98.95 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.93 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.93 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.91 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.83 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.83 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.79 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 98.78 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.77 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.76 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.75 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.71 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 98.71 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.69 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.69 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.69 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.68 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.68 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.67 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.67 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 98.66 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.65 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.64 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.64 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.63 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.63 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.63 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.62 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.59 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.57 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.57 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.53 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.53 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.52 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 98.51 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.5 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 98.49 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.47 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.47 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.46 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.45 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.39 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.37 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.33 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.19 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.17 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.12 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.0 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.0 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 97.85 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 97.83 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 97.8 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 97.67 | |
| 2i5e_A | 211 | Hypothetical protein MM_2497; APC86122, methanosar | 96.75 | |
| 1qg8_A | 255 | Protein (spore coat polysaccharide biosynthesis P | 85.01 | |
| 3cgx_A | 242 | Putative nucleotide-diphospho-sugar transferase; Y | 84.58 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 82.98 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-60 Score=510.48 Aligned_cols=429 Identities=58% Similarity=1.057 Sum_probs=361.9
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcc--cCCCCc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTY--NLGDGM 167 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~--~~~~~~ 167 (526)
+++|+|||||||.|+||+|||..+||+|+|++|+||||+|++++|.++|+++|+|++++..+++.+|+.+.| ++.
T Consensus 18 ~~~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~--- 94 (451)
T 1yp2_A 18 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMG--- 94 (451)
T ss_dssp HHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC-------
T ss_pred ccceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhhhhhcccc---
Confidence 456999999999999999999999999999999889999999999999999999999999889999987654 111
Q ss_pred cc-CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEE
Q 043870 168 NF-GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVC 246 (526)
Q Consensus 168 ~~-~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~ 246 (526)
++ ..+.+.++...+.+ ..+.|..||+++|+.+++++++ ...++|++++||+++..++.++++.|.++++++|++
T Consensus 95 ~~~~~~~v~i~~~~~~~--~~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~ 169 (451)
T 1yp2_A 95 GYKNEGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVA 169 (451)
T ss_dssp ----CCEEEEEESCSST--TSCCCCCSHHHHHHHTHHHHTT---SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEE
T ss_pred cccccCcEEEecccccc--cccccccCcHHHHHHHHHHHHh---cCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEE
Confidence 01 12235666544432 2346778999999999988852 234889999999999999999999999989999998
Q ss_pred EEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC
Q 043870 247 CLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP 326 (526)
Q Consensus 247 ~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~ 326 (526)
+.+.+...+.+||++.+|++++|..|.|||..+..+.++++.+++.-.+......++++++|+|+|++++|.++++..++
T Consensus 170 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~ 249 (451)
T 1yp2_A 170 ALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFP 249 (451)
T ss_dssp EEEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCT
T ss_pred EEEcChhhcccCCEEEECCCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcc
Confidence 88775334668999999989999999999986554555566666544333222356899999999999998778877655
Q ss_pred CCCChhhchHhhhhcC-CcEEEEEecceeeecCChhhHHHhchhhcCCC-CCcccCCCCCcccCCCCCCCCeeecCeeEe
Q 043870 327 EANDFGSEVIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDANLSLTDKP-PKFHFYDPQKPIFTSPRFLPPSKIEKCRVQ 404 (526)
Q Consensus 327 ~~~d~~~dil~~li~~-~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~-~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~ 404 (526)
...+|.+++|+.++++ .++++|.++++|.|+||+++|.+|++.++++. +...++++.+++++.+.++|+++|.+++|.
T Consensus 250 ~~~~~~~~~l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~ 329 (451)
T 1yp2_A 250 GANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVT 329 (451)
T ss_dssp TCCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEEEEEEEE
T ss_pred cccchHhhHHHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEEcceEEe
Confidence 5667778999998886 89999999999999999999999999998876 667789999999999999999999889998
Q ss_pred eeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEEC
Q 043870 405 DSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIG 484 (526)
Q Consensus 405 ~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig 484 (526)
++.||++|+|+.+.+.+++||++|.|+++|.|.+++++++++++....+......|...+.||+||+|.+|+||+||.||
T Consensus 330 ~~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG 409 (451)
T 1yp2_A 330 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIG 409 (451)
T ss_dssp EEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEEC
T ss_pred CeEECCCCEEcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEEC
Confidence 99999999998878899999999999999999999999998888887778888888866899999999999999999999
Q ss_pred CCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 485 KNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 485 ~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
++++|.+.+++.++.++|++++|++|+++||++|+||+||+|
T Consensus 410 ~~~~i~~~~~~~~~~~ig~~~~ig~~~v~Ig~~a~i~agsvv 451 (451)
T 1yp2_A 410 DNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451 (451)
T ss_dssp TTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred CCCEEeCCcccccCceeCCCEEEcCCEEEECCCcEECCCccC
Confidence 999999999998888999999999999999999999999986
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=430.25 Aligned_cols=384 Identities=35% Similarity=0.616 Sum_probs=305.8
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+++|+|||||||.|+||+|||..+||+|+|++|+||||+|++++|.++|+++|+|++++..+++.+|+.+.|++.. .+
T Consensus 10 m~~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~--~~ 87 (420)
T 3brk_X 10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWDFFR--PE 87 (420)
T ss_dssp GGGEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHSCCCC--GG
T ss_pred hhceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhhhcccc--cc
Confidence 3468999999999999999999999999999999789999999999999999999999998899999876442210 01
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
....+.++...+.. ....|+.|++++|+.+++++++ ...++|++++||+++..++.++++.|.++++++|+++.+
T Consensus 88 ~~~~v~i~~~~~~~--~~~~~~~Gt~~al~~a~~~l~~---~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~ 162 (420)
T 3brk_X 88 RNESFDILPASQRV--SETQWYEGTADAVYQNIDIIEP---YAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLE 162 (420)
T ss_dssp GTCEEEEECCC---------CCCCHHHHHHTTHHHHHH---HCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEE
T ss_pred ccCCEEEeCccccc--cCCccccCCHHHHHHHHHHHHh---cCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEee
Confidence 11235555433320 0124668999999999988863 124789999999999999999999999989999999888
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC--
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-- 327 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-- 327 (526)
.+...+..||++..|++++|..|.|||..+... + ....++++++|+|+|++++|.++++...+.
T Consensus 163 ~~~~~~~~~g~v~~d~~g~v~~~~ekp~~~~~~--~------------~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 228 (420)
T 3brk_X 163 VPRMEATGFGVMHVNEKDEIIDFIEKPADPPGI--P------------GNEGFALASMGIYVFHTKFLMEAVRRDAADPT 228 (420)
T ss_dssp EETTGGGGSEEEEECTTSBEEEEEESCSSCCCB--T------------TBTTEEEEEEEEEEEEHHHHHHHHTSSCCC--
T ss_pred cCccccCcccEEEECCCCcEEEeEeCCCccccc--c------------ccccceEEeeeeEEEeHHHHHHHHHHhcccCC
Confidence 755456789999999899999999998643210 0 001357999999999999987777654331
Q ss_pred -CCChhhchHhhhhcCCcEEEEEe-----------cceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCCC
Q 043870 328 -ANDFGSEVIPMATKDFNVQAYLF-----------NDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPP 395 (526)
Q Consensus 328 -~~d~~~dil~~li~~~~V~~~~~-----------~~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~~ 395 (526)
..+|..++++.++++.++++|.+ +++|.||||++||.+||+.++++.+...++.+..++++.+.+.|+
T Consensus 229 ~~~~~~~d~l~~li~~g~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~ 308 (420)
T 3brk_X 229 SSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPP 308 (420)
T ss_dssp --------CTTHHHHHSCEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCCCCCCCCCC
T ss_pred ccccchHHHHHHHhhhCcEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCceeeccccCCC
Confidence 23566789999888779999999 889999999999999999999888777778888899999999999
Q ss_pred eeec------CeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCC
Q 043870 396 SKIE------KCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRD 469 (526)
Q Consensus 396 ~~i~------~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 469 (526)
+++. ++.+.++.||++|+|..+.|.+|+||++|.|+++|.|.+++++.+ +.||+|
T Consensus 309 ~~i~~~~~~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~-------------------~~i~~~ 369 (420)
T 3brk_X 309 AKFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPS-------------------VKIGRH 369 (420)
T ss_dssp CEEECBCSSCBCEEESCEECSSCEEESCEEESCEECTTCEECTTCEEEEEEECTT-------------------CEECTT
T ss_pred cEEecccccCCcEecCCEECCCCEEcCCEEeCcEEcCCCEECCCCEEcceEEcCC-------------------CEECCC
Confidence 9994 578889999999999667889999999999999999998776665 899999
Q ss_pred CEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEE-ccCcEEECCCC
Q 043870 470 TKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYI-RSGITVVLKNT 518 (526)
Q Consensus 470 ~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I-~~g~~~i~~~~ 518 (526)
|.|.+|+||++|.||++++|..... .+.++++| .+|+++|.+++
T Consensus 370 ~~i~~~~ig~~~~i~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~ 414 (420)
T 3brk_X 370 AQLSNVVIDHGVVIPEGLIVGEDPE-----LDAKRFRRTESGICLITQSM 414 (420)
T ss_dssp CEEEEEEECTTCEECTTCEESSCHH-----HHHHHSEECTTSCEEECHHH
T ss_pred CEEeceEECCCCEECCCCEEeCCCC-----CCCceEEEecCceEEEecch
Confidence 9999999999999999999985422 22224677 57776666543
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=392.90 Aligned_cols=389 Identities=17% Similarity=0.233 Sum_probs=263.8
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+..+.+||||||.||||+|+| ||||+||+|+ |||+|+|++|.++|+++|+|+++|..+++.+|+.+... .|
T Consensus 10 ~~~~~vvILAaG~GtRm~~~~---pK~l~pv~gk-p~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~~-----~~ 80 (501)
T 3st8_A 10 PGDTAVLVLAAGPGTRMRSDT---PKVLHTLAGR-SMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELAD-----TL 80 (501)
T ss_dssp --CEEEEEEECSCCGGGCCSS---CGGGCEETTE-EHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHHH-----HH
T ss_pred CCCceEEEECCcCcccCCCCC---CHHHeEECCh-hHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHHH-----hc
Confidence 456899999999999999986 9999999999 99999999999999999999999999999999975210 11
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti~~ 247 (526)
+. .+.++. |. +++||++||+++++++.+ ...+++++++||. ++.. .+.++++.|+..++++|+++
T Consensus 81 ~~-~i~~~~--q~-------~~lGTa~Av~~a~~~l~~---~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~ 147 (501)
T 3st8_A 81 GR-TIDVAL--QD-------RPLGTGHAVLCGLSALPD---DYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLT 147 (501)
T ss_dssp TS-CCEEEE--CS-------SCCCHHHHHHHHHTTSCT---TCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CC-cEEEEE--cC-------CCCCcHHHHHHHHHHhcc---ccccceeeecCcceeecHHHHHHHHHHHhhccccceEee
Confidence 11 144433 32 358999999999988864 3457899999998 4444 48999999999999999999
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
.++++ +..||.+..|++|+|..|.|||+.+. ++ ...+++++|+|+|+++.|..+++....+
T Consensus 148 ~~~~d--p~~yG~i~~~~~g~v~~ivEk~~~~~---------------~~--~~i~~in~Giy~f~~~~l~~~l~~l~~~ 208 (501)
T 3st8_A 148 TTLDD--PFGYGRILRTQDHEVMAIVEQTDATP---------------SQ--REIREVNAGVYAFDIAALRSALSRLSSN 208 (501)
T ss_dssp EECSC--CTTSCEEEECTTCCEEEEECGGGCCH---------------HH--HHCCEEEEEEEEEEHHHHHHHHTTCCCC
T ss_pred eccCC--chhccccccccceeEEeeccccCCCh---------------hh--ccceeeeceeeeecchhHHHhhhhhccc
Confidence 98876 67899999999999999999987642 11 1467899999999999998887764332
Q ss_pred ---CCChhhchHhhhhc-CCcEEEEEecceeeecC--ChhhHHHhchhhc---------CC----CCCcccCCCCCcccC
Q 043870 328 ---ANDFGSEVIPMATK-DFNVQAYLFNDYWEDIG--TIKSFFDANLSLT---------DK----PPKFHFYDPQKPIFT 388 (526)
Q Consensus 328 ---~~d~~~dil~~li~-~~~V~~~~~~~~w~dIg--t~~d~~~An~~ll---------~~----~~~~~~~~~~~~i~~ 388 (526)
...+..+++..+.. +..+.++...+.|...+ +...+.++...+. .. .+...++++...+..
T Consensus 209 n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~ 288 (501)
T 3st8_A 209 NAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGR 288 (501)
T ss_dssp STTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECT
T ss_pred ccccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECC
Confidence 22344566666554 56778887777766544 4444443332221 11 122223344444444
Q ss_pred CCCCCCCeeec-------------CeeEeeeEECCCCEEcceeee------ceEECCCcEECCCCEEeceEEECCcccch
Q 043870 389 SPRFLPPSKIE-------------KCRVQDSIISHGCFLRECSVE------HSIVGIRSRLEYGVELKDTMMMGADYYQT 449 (526)
Q Consensus 389 ~~~~~~~~~i~-------------~~~i~~s~Ig~~~~i~~~~v~------~s~ig~~~~I~~~~~i~~~v~~~~~~~~~ 449 (526)
.+.+.+++.+. .+.+.++.++.++.+..+.+. ++.+|++++|++++.|.+.+.+|+ +++.
T Consensus 289 dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~-~v~i 367 (501)
T 3st8_A 289 DTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGA-FVEV 367 (501)
T ss_dssp TCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEE-TEEE
T ss_pred cceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCC-eEEE
Confidence 44444444442 223333333333333222221 222333333333333333333332 2222
Q ss_pred hHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCc-cccCCCeEEccCcE-----EECCCCEECCC
Q 043870 450 EAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEA-ERPSDGFYIRSGIT-----VVLKNTTIKDG 523 (526)
Q Consensus 450 ~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~-~~~~~~~~I~~g~~-----~i~~~~~i~~g 523 (526)
+. +.+.+| +.|++.+.|.+|+||+||.||+++++.|.+++..+ +.+|++++||+++. .||++|+||+|
T Consensus 368 k~---s~Ig~g---skI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ag 441 (501)
T 3st8_A 368 KN---STIGTG---TKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAG 441 (501)
T ss_dssp ES---CEECTT---CEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEEECTTCEECTT
T ss_pred cc---ceecCC---cEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcEECCCCEECCC
Confidence 21 000011 34444455567999999999999999999998876 88899999997765 78999999999
Q ss_pred ccC
Q 043870 524 TII 526 (526)
Q Consensus 524 t~i 526 (526)
|+|
T Consensus 442 s~v 444 (501)
T 3st8_A 442 TVV 444 (501)
T ss_dssp CEE
T ss_pred CEE
Confidence 986
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-43 Score=374.47 Aligned_cols=378 Identities=19% Similarity=0.266 Sum_probs=274.5
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
.-+|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+++.+ +
T Consensus 11 ~~~~vIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~~~------~----- 75 (468)
T 1hm9_A 11 SNFAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG------Q----- 75 (468)
T ss_dssp CEEEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSSS------S-----
T ss_pred CCcEEEEcCCCCccCCC---CCCcEeeEECCc-cHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHhCC------C-----
Confidence 35899999999999984 689999999999 99999999999999999999999987777766542 1
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
+.++... +..|++++++.++..+++ ..+.|++++||+ +...++.++++.|.+.++++++++.+
T Consensus 76 --i~~v~~~---------~~~G~~~sl~~a~~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~ 140 (468)
T 1hm9_A 76 --TEFVTQS---------EQLGTGHAVMMTEPILEG----LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAE 140 (468)
T ss_dssp --SEEEECS---------SCCCHHHHHHTTHHHHTT----CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred --cEEEeCC---------ccCChHHHHHHHHHHhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEec
Confidence 3333321 247999999999988852 247899999999 55667999999999888899988887
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC--
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-- 327 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-- 327 (526)
.++ +..||++..|++|+|..|.|||..... ....+++++|+|+|+++.|.++++...+.
T Consensus 141 ~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~ 201 (468)
T 1hm9_A 141 TDN--PFGYGRIVRNDNAEVLRIVEQKDATDF-----------------EKQIKEINTGTYVFDNERLFEALKNINTNNA 201 (468)
T ss_dssp CSC--CTTSCEEEECTTCCEEEEECTTTCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHTTCCSCST
T ss_pred cCC--CCceeEEEECCCCCEEEEEECCCCChH-----------------HhcCeEEEEEEEEEEHHHHHHHHHhhccccC
Confidence 755 557999999989999999999753210 01357899999999999776677654332
Q ss_pred -CCChhhchHhhhhc-CCcEEEEEecceeee--cCChhhHHHhchhhcCC-------------CCCcccCC---------
Q 043870 328 -ANDFGSEVIPMATK-DFNVQAYLFNDYWED--IGTIKSFFDANLSLTDK-------------PPKFHFYD--------- 381 (526)
Q Consensus 328 -~~d~~~dil~~li~-~~~V~~~~~~~~w~d--Igt~~d~~~An~~ll~~-------------~~~~~~~~--------- 381 (526)
...+..++++.+++ +.++++|.++++|.+ |+|++||.+|+..+..+ .|...+++
T Consensus 202 ~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ 281 (468)
T 1hm9_A 202 QGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEV 281 (468)
T ss_dssp TCSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEECTTC
T ss_pred CCeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEECCCC
Confidence 12345788888887 468999999999977 55999999998765321 11111222
Q ss_pred ---CCCcccCCCCCCCCeee-cCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCccc-chhHHHHHH
Q 043870 382 ---PQKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYY-QTEAEIAAL 456 (526)
Q Consensus 382 ---~~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~-~~~~~~~~~ 456 (526)
+.+.+.+.+.++++|.| .++.|.++.||++|.|+.+.+.+++||+++.|+++|.|...+++|++.. ....++
T Consensus 282 ~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i--- 358 (468)
T 1hm9_A 282 QIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEV--- 358 (468)
T ss_dssp EECSSCEEESSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEE---
T ss_pred EECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECCccEECCCcEE---
Confidence 23333334444455555 3566666778888888766677788888888888888875555554310 000000
Q ss_pred hhCCCcceEECCCCEEe------ceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEECCCc
Q 043870 457 LAEGKVPVGIGRDTKIK------NCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIKDGT 524 (526)
Q Consensus 457 ~~~~~~~~~Ig~~~~i~------~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~~gt 524 (526)
..+.||++++|. +++||+||.||.++++.+.+++.. ..++|++++|+.+++ .||++++|++|+
T Consensus 359 -----~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i~~~s 433 (468)
T 1hm9_A 359 -----KGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGS 433 (468)
T ss_dssp -----ESCEECTTCEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTTCEECTTC
T ss_pred -----eeeEEcCCcEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCCCEECCCC
Confidence 013455666553 467888888899988888666554 477888888888775 578888888888
Q ss_pred cC
Q 043870 525 II 526 (526)
Q Consensus 525 ~i 526 (526)
+|
T Consensus 434 ~v 435 (468)
T 1hm9_A 434 TI 435 (468)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=365.79 Aligned_cols=355 Identities=19% Similarity=0.300 Sum_probs=271.6
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|+|||||||.|+||+|||...||+|+|++|+ |||+|++++|.++|+++|+|++++. +.+++.+.+.
T Consensus 1 m~aiIlA~G~g~R~~plt~~~~K~ll~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~~---------- 66 (401)
T 2ggo_A 1 MKAFILAAGSGERLEPITHTRPKAFVPILSK-PLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKLK---------- 66 (401)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHCT----------
T ss_pred CeEEEEcCcCccccCcccCCCCcceeeECCE-eHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccCC----------
Confidence 6899999999999999999999999999999 9999999999999999999999986 5677654320
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecc--cCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYR--MDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~--~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
.+.++.... |+.|++++++.+.+ .+++++++||+.+. .++.++++ .++.++++.+.
T Consensus 67 ~i~~~~~~~--------~~~g~~~~l~~~~~---------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~ 124 (401)
T 2ggo_A 67 EISIVTQKD--------DIKGTGAAILSAKF---------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKV 124 (401)
T ss_dssp TCEEEECCT--------TCCBSTTTGGGCCC---------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEEC
T ss_pred cEEEEeCCC--------CCCChHHHHHHhcc---------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEc
Confidence 144443221 24688888866532 37899999999876 45777765 35678888877
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-CC
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-AN 329 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-~~ 329 (526)
.+ +..|+++..+++|++..|.|||..+ .++++++|+|+|++++|. .++...+. ..
T Consensus 125 ~~--~~~~~~v~~~~~g~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~~~-~l~~~~~~~~~ 180 (401)
T 2ggo_A 125 SN--PKDYGVLVLDNQNNLSKIIEKPEIP---------------------PSNLINAGIYKLNSDIFT-YLDKISISERG 180 (401)
T ss_dssp SC--CSSSCEEEECTTSSEEEEECSCSSC---------------------SCSEEEEEEEEEETHHHH-HHHHSCCCSSS
T ss_pred CC--CcceeEEEECCCCeEEEEEECCCCC---------------------CCcEEEEEEEEEcHHHHH-HhhhcCcCCCC
Confidence 54 4578999998889999999998643 467899999999999885 55554321 12
Q ss_pred Ch-hhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCCC---CcccCCCCCcccCCCCCCCCeee-cCeeEe
Q 043870 330 DF-GSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPP---KFHFYDPQKPIFTSPRFLPPSKI-EKCRVQ 404 (526)
Q Consensus 330 d~-~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~---~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~ 404 (526)
++ ..++++.+..+.++.++..+++|.||+||+||.+|+..++.+.. ....+++.+.+.+.+.+++++.| .++.|.
T Consensus 181 ~~~~~~~~~~~~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~ 260 (401)
T 2ggo_A 181 ELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIE 260 (401)
T ss_dssp CBCHHHHHHHHHHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEE
T ss_pred ceEHHHHHHHHHCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEe
Confidence 22 35777777224689999999999999999999999998876532 12345566666666677777777 566665
Q ss_pred e-eEECCCCEEcc-eee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCC
Q 043870 405 D-SIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNA 481 (526)
Q Consensus 405 ~-s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~ 481 (526)
. +.||++|.|++ +.| .+++||++|.|+++|.|.++++..+ +.||+++.|.+|+||++|
T Consensus 261 ~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~Ig~~~ 321 (401)
T 2ggo_A 261 GPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEG-------------------SKIPHLSYVGDSVIAEDV 321 (401)
T ss_dssp SSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTT-------------------CEEEESCEEESCEECTTC
T ss_pred CCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCC-------------------cEECCCceEcceEECCCc
Confidence 3 88899999974 556 4799999999999999977666555 899999999999999999
Q ss_pred EECCCcEEccCCC------------------cCCccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 482 KIGKNVIIANKDG------------------VEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 482 ~Ig~~~~i~~~~~------------------v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
.||++++|.+... .....++|++++|+.+++ .||++++|++|++|
T Consensus 322 ~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv 389 (401)
T 2ggo_A 322 NFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVV 389 (401)
T ss_dssp EECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred EECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCCcEECCCcEECCCCeE
Confidence 9999999984211 113567778888877764 56777777777764
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=367.64 Aligned_cols=376 Identities=16% Similarity=0.224 Sum_probs=259.2
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
++|.|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+.+.+++.+. +
T Consensus 7 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~~---------~ 73 (459)
T 4fce_A 7 SSMSVVILAAGKGTRMYS---DLPKVLHPLAGK-PMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLADP---------S 73 (459)
T ss_dssp CCEEEEEEECCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-------------
T ss_pred CcceEEEECCCCCccCCC---CCCcccCeeCCe-eHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhccC---------C
Confidence 569999999999999996 689999999999 999999999999999999999999988887777531 1
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~~~ 248 (526)
+.++.. . +..|++++++.++..++ ..+.|++++||+ +...++.++++.|.+ .++++++.
T Consensus 74 ---~~~v~~--~-------~~~g~~~~i~~~~~~~~-----~~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~ 134 (459)
T 4fce_A 74 ---LNWVLQ--A-------EQLGTGHAMQQAAPHFA-----DDEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTV 134 (459)
T ss_dssp ----CEEEC--S-------SCCCHHHHHHHHGGGSC-----TTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEE
T ss_pred ---cEEEeC--C-------CCCCcHHHHHHHHHhcC-----CCCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEE
Confidence 333332 1 23799999999987774 237899999999 455568999988754 56777777
Q ss_pred EccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC--
Q 043870 249 PVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP-- 326 (526)
Q Consensus 249 ~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~-- 326 (526)
+..+ +..|+++..| +|+|..|.|||..... +..++++++|+|+|+++.|.++++...+
T Consensus 135 ~~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 194 (459)
T 4fce_A 135 KLDN--PSGYGRIVRE-NGDVVGIVEHKDASDA-----------------QREINEINTGILVANGRDLKRWLSLLDNNN 194 (459)
T ss_dssp ECSC--CTTSCEEEEE-TTEEEEEECGGGCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHHTCCCCS
T ss_pred ecCC--CCcccEEEeC-CCcEEEEEECCCCChH-----------------HhhccEEEEEEEEEEHHHHHHHHHHhCccc
Confidence 7654 5679998887 7999999998753211 1145789999999999988778776432
Q ss_pred -CCCChhhchHhhhhc-CCcEEEEEeccee--eecCChhhHHHhchhhcCCC-------------CCcccCCCCCcccCC
Q 043870 327 -EANDFGSEVIPMATK-DFNVQAYLFNDYW--EDIGTIKSFFDANLSLTDKP-------------PKFHFYDPQKPIFTS 389 (526)
Q Consensus 327 -~~~d~~~dil~~li~-~~~V~~~~~~~~w--~dIgt~~d~~~An~~ll~~~-------------~~~~~~~~~~~i~~~ 389 (526)
....+..++++.+++ +.++.++..+++| ++|+|++||..|+..+..+. |...++++.+.+...
T Consensus 195 ~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~ 274 (459)
T 4fce_A 195 AQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRD 274 (459)
T ss_dssp TTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSS
T ss_pred cCCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCC
Confidence 122345778887776 4789999999766 67999999999987654221 111122223333333
Q ss_pred CCCCCCeee-------------cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCccc-chhHHHH
Q 043870 390 PRFLPPSKI-------------EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYY-QTEAEIA 454 (526)
Q Consensus 390 ~~~~~~~~i-------------~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~-~~~~~~~ 454 (526)
+.+.|.+.| .++.|.++.||++|.|+. +.+.+++||+++.|+++|.|...+.+|++.. ....++
T Consensus 275 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i- 353 (459)
T 4fce_A 275 ITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEI- 353 (459)
T ss_dssp CEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEE-
T ss_pred cEECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEE-
Confidence 333333333 244455566666666653 4555566666666666555554443433200 000000
Q ss_pred HHhhCCCcceEECCCCE------EeceEECCCCEECCCcEEccCCCcCCc-cccCCCeEEccCcE-----EECCCCEECC
Q 043870 455 ALLAEGKVPVGIGRDTK------IKNCIIDKNAKIGKNVIIANKDGVEEA-ERPSDGFYIRSGIT-----VVLKNTTIKD 522 (526)
Q Consensus 455 ~~~~~~~~~~~Ig~~~~------i~~~iI~~~~~Ig~~~~i~~~~~v~~~-~~~~~~~~I~~g~~-----~i~~~~~i~~ 522 (526)
..+.|+++++ |.+|+||+||.||+++++.+.+++.++ .++|++++|+.+++ .||++++||+
T Consensus 354 -------~~~~i~~~~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~iga 426 (459)
T 4fce_A 354 -------KKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGA 426 (459)
T ss_dssp -------EEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECTTCEECT
T ss_pred -------eeeEEcCCCEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECCCCEECC
Confidence 0022333333 335688999999999999988877774 78899999998876 6788888888
Q ss_pred CccC
Q 043870 523 GTII 526 (526)
Q Consensus 523 gt~i 526 (526)
|++|
T Consensus 427 gsvV 430 (459)
T 4fce_A 427 GTTV 430 (459)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8764
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=356.51 Aligned_cols=377 Identities=20% Similarity=0.288 Sum_probs=250.5
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
.+++.|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+++.+. +
T Consensus 3 ~~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-----~--- 70 (456)
T 2v0h_A 3 KKALSAVILAAGKGTRMYS---DLPKVLHTIAGK-PMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANE-----Q--- 70 (456)
T ss_dssp -CCEEEEEECCCCCGGGCS---SSCGGGSEETTE-EHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTTC-----C---
T ss_pred CCcceEEEECCCCCcccCC---CCCccccEECCc-cHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhcC-----C---
Confidence 4568999999999999984 689999999999 999999999999999999999999877777776531 1
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~~ 247 (526)
++++... +..|++++++.+++.++ ..+.+++++||+ +...++.++++.|.+ +++++++
T Consensus 71 ----~~~v~~~---------~~~g~~~~~~~~~~~~~-----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~ 130 (456)
T 2v0h_A 71 ----VNWVLQT---------EQLGTAHAVQQAAPFFK-----DNENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLT 130 (456)
T ss_dssp ----CEEEECS---------CCCCHHHHHHHHGGGCC-----TTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEE
T ss_pred ----cEEEeCC---------CCCCcHHHHHHHHHhcC-----CCCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEE
Confidence 3333321 23799999999987764 137899999999 445678999988765 5778877
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
.+.++ +..|+.+..| ++++..|.|||.... . +...+++++|+|+|+++.|.++++...+.
T Consensus 131 ~~~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~---------------~--~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 190 (456)
T 2v0h_A 131 VNLDN--PTGYGRIIRE-NGNVVAIVEQKDANA---------------E--QLNIKEVNTGVMVSDGASFKKWLARVGNN 190 (456)
T ss_dssp EECSS--CTTSCEEEEE-TTEEEEEECTTTCCH---------------H--HHTCCEEEEEEEEEEHHHHHHHHTTCCCC
T ss_pred eecCC--CCccceEEEc-CCcEEEEEECCCCCh---------------h--HhcCcEEEEEEEEEEHHHHHHHHHHhccc
Confidence 77654 4578988887 889999999876321 0 01457899999999999877777653322
Q ss_pred ---CCChhhchHhhhhcC-CcEEEEEecce--eeecCChhhHHHhchhhcCCC------CCcccCCC-CCcccCCCCCCC
Q 043870 328 ---ANDFGSEVIPMATKD-FNVQAYLFNDY--WEDIGTIKSFFDANLSLTDKP------PKFHFYDP-QKPIFTSPRFLP 394 (526)
Q Consensus 328 ---~~d~~~dil~~li~~-~~V~~~~~~~~--w~dIgt~~d~~~An~~ll~~~------~~~~~~~~-~~~i~~~~~~~~ 394 (526)
...+..++++.++.. .++.++..+++ |++|+||+||.+|+..+..+. ....+++| .+.+.+.+.+++
T Consensus 191 ~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~ 270 (456)
T 2v0h_A 191 NAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGK 270 (456)
T ss_dssp STTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEEEEECS
T ss_pred cccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCceEECC
Confidence 123347788877764 68999998765 579999999999988664321 11112232 222333344444
Q ss_pred Ceee-cCeeEe-eeEECCCCEEcc-eeeeceEECCCcEECCCCEEece-----------------EEECCcccch-hHHH
Q 043870 395 PSKI-EKCRVQ-DSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDT-----------------MMMGADYYQT-EAEI 453 (526)
Q Consensus 395 ~~~i-~~~~i~-~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~-----------------v~~~~~~~~~-~~~~ 453 (526)
++.| +++.|. ++.||++|.|+. +.|++++||++|.|+++|.|.++ +.+|++..=+ ..++
T Consensus 271 ~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i 350 (456)
T 2v0h_A 271 DVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEI 350 (456)
T ss_dssp SCEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEE
T ss_pred CCEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEE
Confidence 4444 233332 355555555552 44455555555555555554332 2222210000 0000
Q ss_pred HHHhhCCCcceEECCCCEEe------ceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEEC
Q 043870 454 AALLAEGKVPVGIGRDTKIK------NCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIK 521 (526)
Q Consensus 454 ~~~~~~~~~~~~Ig~~~~i~------~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~ 521 (526)
.++.||+++++. +++||+||.||+++++.+.++... ..++|++++|+.+++ .||++++|+
T Consensus 351 --------~~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig 422 (456)
T 2v0h_A 351 --------KKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIG 422 (456)
T ss_dssp --------ESCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEEC
T ss_pred --------eccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEEC
Confidence 001223333332 257888888888888887655544 567888888887765 578888888
Q ss_pred CCccC
Q 043870 522 DGTII 526 (526)
Q Consensus 522 ~gt~i 526 (526)
+|++|
T Consensus 423 ~~s~v 427 (456)
T 2v0h_A 423 AGTTI 427 (456)
T ss_dssp TTCEE
T ss_pred CCCEE
Confidence 88764
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=294.66 Aligned_cols=246 Identities=19% Similarity=0.272 Sum_probs=196.6
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
.|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.+.+.....-..
T Consensus 2 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~ 80 (281)
T 3juk_A 2 IKKCLFPAAGYGTRFLPITKTIPKEMLPIVDK-PLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTN 80 (281)
T ss_dssp CCEEEEECCSCCGGGTTGGGTSCGGGCBSSSS-BHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------CC
T ss_pred ceEEEEECCcCCcccCccccCCCcccceECCE-EHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhccc
Confidence 47999999999999999999999999999999 99999999999999999999999999999999876543321110000
Q ss_pred ------------CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-----HHHHHH
Q 043870 172 ------------GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-----YMDFVQ 234 (526)
Q Consensus 172 ------------~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-----l~~ll~ 234 (526)
..+.+....+. ++.||+++|+.++..+++ ++|+|++||++++.+ +.++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~-------~~~Gt~~al~~a~~~l~~------~~~lv~~~D~~~~~~~~~~~l~~l~~ 147 (281)
T 3juk_A 81 KENALKSIRNIIEKCCFSYVRQK-------QMKGLGHAILTGEALIGN------EPFAVILADDLCISHDHPSVLKQMTS 147 (281)
T ss_dssp HHHHHHHHHHHHHHCEEEEEECS-------SCCCHHHHHHHTHHHHCS------SCEEEECTTEEEECTTSCCHHHHHHH
T ss_pred chhhhhhhhccccCccEEEEecC-------CCCCcHHHHHHHHHHcCC------CCEEEEeCCeeccCccchHHHHHHHH
Confidence 00222222222 347999999999988854 789999999999998 999999
Q ss_pred HHHHcCCcEEEEEEEccCCcCCCceEEEEcC--CC--CeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEE
Q 043870 235 HHINSGGDISVCCLPVDESRASDFGLMKIDE--TG--RIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIY 310 (526)
Q Consensus 235 ~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d~--~g--~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giy 310 (526)
.|.+.++ .++++..++...+..||++..|+ +| +|..|.|||..... .++++++|+|
T Consensus 148 ~~~~~~~-~~v~~~~~~~~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~~~-------------------~~~~~~~GiY 207 (281)
T 3juk_A 148 LYQKYQC-SIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQEDA-------------------PSNLAVIGRY 207 (281)
T ss_dssp HHHHHCS-CEEEEEECCTTTGGGSEEEEEEEEETTEEEEEEEEESCCTTTC-------------------SCSEEEEEEE
T ss_pred HHHHcCC-CEEEEEEechhhcccCCEEEeccCCCCceEEeEEEECcCCCCC-------------------CcceeEEEEE
Confidence 9988877 67777777656678899999986 78 99999999974211 4678999999
Q ss_pred EEcHHHHHHHHHhhCCC--CCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 311 LFKTEVLLKVLRWHYPE--ANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 311 if~~~~l~~ll~~~~~~--~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
+|++++|. .++...+. ......++++.++++.++.+|.++++|.|||||++|.+|+..++.
T Consensus 208 i~~~~~l~-~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~ 270 (281)
T 3juk_A 208 ILTPDIFE-ILSETKPGKNNEIQITDALRTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYK 270 (281)
T ss_dssp EECTTHHH-HHHTCCCCGGGSCCHHHHHHHHHHHSCCEEEECCSEEEETTSHHHHHHHHHHHHH
T ss_pred EECHHHHH-HHHhcCCCCCCceeHHHHHHHHHhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHh
Confidence 99999985 56653221 111237889988887799999999999999999999999998865
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=278.50 Aligned_cols=237 Identities=24% Similarity=0.355 Sum_probs=193.8
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccC-hhHHHHHhhhcccCCCCcc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFN-SQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~-~~~l~~~l~~~~~~~~~~~ 168 (526)
.+.|+|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|+|++++. .+++.+++.... .
T Consensus 22 ~~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~~~------~ 94 (269)
T 4ecm_A 22 SNAMKGIILAGGTGSRLYPITKVTNKHLLPVGRY-PMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGSGQ------E 94 (269)
T ss_dssp --CEEEEEECCSCCGGGTTTTSSSCGGGSEETTE-EHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSG------G
T ss_pred ccCcEEEEECCCCccccccccCCCCceecEECCE-EHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHhhcc------c
Confidence 4568999999999999999999999999999999 9999999999999999999999975 467777776422 2
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~ 248 (526)
|+.. +.+.. +. +..|++++++.++..+++ ++|++++||+++..++.++++.|.++++++++++.
T Consensus 95 ~~~~-i~~~~--~~-------~~~G~~~al~~a~~~~~~------~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~ 158 (269)
T 4ecm_A 95 FGVS-FTYRV--QD-------KAGGIAQALGLCEDFVGN------DRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQ 158 (269)
T ss_dssp GTCE-EEEEE--CS-------SCCCHHHHHHTTHHHHTT------SEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEE
T ss_pred cCce-EEEee--CC-------ccCcHHHHHHHHHHhcCC------CcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEE
Confidence 2211 33322 22 237999999999888853 88999999999999999999999998899999998
Q ss_pred EccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-
Q 043870 249 PVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE- 327 (526)
Q Consensus 249 ~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~- 327 (526)
+.++ +..||++..| +|+|..|.|||..+ .++++++|+|+|++++|. .++...+.
T Consensus 159 ~~~~--~~~~g~v~~d-~g~v~~~~ekp~~~---------------------~~~~~~~Giy~~~~~~l~-~l~~~~~~~ 213 (269)
T 4ecm_A 159 SVDD--PERFGVANIQ-NRKIIEIEEKPKEP---------------------KSSYAVTGIYLYDSKVFS-YIKELKPSA 213 (269)
T ss_dssp ECSC--GGGSEEEEEE-TTEEEEEEESCSSC---------------------SCSEEEEEEEEECTTHHH-HHTSCCBCT
T ss_pred ECCC--CCCceEEEEc-CCEEEEEEECCCCC---------------------CCcEEEEEEEEECHHHHH-hhhhcCCCC
Confidence 8765 5679999987 49999999998643 457899999999999884 55543222
Q ss_pred CCCh-hhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCC
Q 043870 328 ANDF-GSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKP 374 (526)
Q Consensus 328 ~~d~-~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~ 374 (526)
..++ ..++++.++++.++.++..+++|.|||||+||.+|+..+.+..
T Consensus 214 ~ge~~l~d~l~~l~~~g~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~~ 261 (269)
T 4ecm_A 214 RGELEITDINNWYLKRGVLTYNEMSGWWTDAGTHVSLQRANALARDIN 261 (269)
T ss_dssp TSCBCHHHHHHHHHHTTCEEEEECCSCEEECSSHHHHHHHHHHTTTCC
T ss_pred CCeeeHHHHHHHHHHcCCEEEEEeCCEEEeCCCHHHHHHHHHHHHhcc
Confidence 2233 4788999988889999999999999999999999999887654
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=275.02 Aligned_cols=243 Identities=21% Similarity=0.305 Sum_probs=188.9
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCC-----
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGD----- 165 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~----- 165 (526)
+.|+|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|+|++++..+++.+|+.+.+.+..
T Consensus 7 ~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~ 85 (302)
T 2e3d_A 7 KVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKR 85 (302)
T ss_dssp SCCEEEEECCSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHHHHHC--
T ss_pred cccEEEEECCcCcccCCccccCCCceeeEECCe-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhhhhhhhhc
Confidence 358999999999999999999999999999999 99999999999999999999999998899999875321100
Q ss_pred C-c----------ccCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeeccc-------
Q 043870 166 G-M----------NFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRM------- 227 (526)
Q Consensus 166 ~-~----------~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~------- 227 (526)
+ . .++ ..+.++. +. +..||+++++.++..+.+ ++|++++||++++.
T Consensus 86 ~~~~~l~~~~~~~~~~-~~i~~~~--~~-------~~~Gt~~al~~a~~~~~~------~~~lv~~~D~~~~~~~~~~~~ 149 (302)
T 2e3d_A 86 VKRQLLDEVQSICPPH-VTIMQVR--QG-------LAKGLGHAVLCAHPVVGD------EPVAVILPDVILDEYESDLSQ 149 (302)
T ss_dssp --CHHHHHHHHTSCTT-CEEEEEE--CS-------SCCCHHHHHHHTHHHHCS------SCEEEECTTEEECTTSSCTTT
T ss_pred cchhhhhhhhhccccC-cceEEee--CC-------ccCCHHHHHHHHHHHcCC------CcEEEEcCCccccCccccchH
Confidence 0 0 001 1133332 21 247999999999988853 78999999998872
Q ss_pred -CHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEEc----CCC---CeeeeeccCCccccccccccccccccchhhhc
Q 043870 228 -DYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKID----ETG---RIRQFLEKPKGENLRSMQIDTTALGLSAQEAR 299 (526)
Q Consensus 228 -dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d----~~g---~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~ 299 (526)
++.++++.|.+.++ .++++.+.+ .+..||++..+ ++| +|..|.|||.....
T Consensus 150 ~~l~~l~~~~~~~~~-~~i~~~~~~--~~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~~~------------------ 208 (302)
T 2e3d_A 150 DNLAEMIRRFDETGH-SQIMVEPVA--DVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA------------------ 208 (302)
T ss_dssp STHHHHHHHHHHHCC-EEEEEEECS--CGGGSEEEECTTCCCCTTCEEEECEEEESCCTTTC------------------
T ss_pred HHHHHHHHHHHhcCC-cEEEEEEcc--CCCCccEEEecccccCCCCceeEEEEEECCCCCcc------------------
Confidence 79999999988776 677777763 35679999874 567 89999999864211
Q ss_pred CCCceeeeeEEEEcHHHHHHHHHhhCCC--CCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCC
Q 043870 300 NFPYIASMGIYLFKTEVLLKVLRWHYPE--ANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDK 373 (526)
Q Consensus 300 ~~~~l~~~Giyif~~~~l~~ll~~~~~~--~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~ 373 (526)
.++++++|+|+|++++|. .++...+. ...+..++++.+++..++.+|.++++|.||||+++|.+|+..++..
T Consensus 209 -~~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~~~~ 282 (302)
T 2e3d_A 209 -PSNLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIR 282 (302)
T ss_dssp -SCSEEEEEEEEECTTHHH-HHTCCCC----CCCHHHHHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHHHHH
T ss_pred -ccceEEEEEEEECHHHHH-HHHhhCCCCCCceehHHHHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 457899999999999884 55553332 1122467888888766999999999999999999999999666543
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=276.09 Aligned_cols=248 Identities=20% Similarity=0.289 Sum_probs=174.0
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCC-----
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLG----- 164 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~----- 164 (526)
.+.|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.+.+.
T Consensus 12 ~~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~ 90 (297)
T 2ux8_A 12 KPLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDR-PLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAA 90 (297)
T ss_dssp CCCCEEEEEECCCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHT
T ss_pred cCccEEEEECCCCccccCccccCCCceeeeECCe-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhh
Confidence 4558999999999999999999999999999999 9999999999999999999999999888888886432100
Q ss_pred CC---------cccCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecc---cCHHHH
Q 043870 165 DG---------MNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYR---MDYMDF 232 (526)
Q Consensus 165 ~~---------~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~---~dl~~l 232 (526)
.+ ..++ ..+.++.. . +..||+++++.++..+++ ++|++++||++++ .++.++
T Consensus 91 ~~~~~~~~~~~~~~g-~~i~~~~~--~-------~~~Gt~~al~~a~~~~~~------~~~lv~~~D~~~~~~~~~l~~l 154 (297)
T 2ux8_A 91 RGKSLDVLDGTRLKP-GNIAYVRQ--Q-------EPMGLGHAVWCARDIVGD------EPFAVLLPDDFMFGQPGCLKQM 154 (297)
T ss_dssp TTCCGGGGTTSCCST-TSEEEEEC--C-------SCCCHHHHHHTTHHHHCS------SCEEEECTTEEEESSSCHHHHH
T ss_pred ccchhhhhhhcccCC-CceEEEeC--C-------CCCChHHHHHHHHHHcCC------CcEEEEeCCeecCCChHHHHHH
Confidence 00 0011 11444332 1 247999999999888753 7899999999887 469999
Q ss_pred HHHHHHcCCcEEEEEEEccCCcCCCceEEEEcC--CC--CeeeeeccCCccccccccccccccccchhhhcCCCceeeee
Q 043870 233 VQHHINSGGDISVCCLPVDESRASDFGLMKIDE--TG--RIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMG 308 (526)
Q Consensus 233 l~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d~--~g--~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~G 308 (526)
++.|.+.++ .++++.+.+...+..||++..|+ ++ +|..|.|||..... .++++++|
T Consensus 155 ~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~-------------------~~~~~~~G 214 (297)
T 2ux8_A 155 VDAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTA-------------------PSNLSVIG 214 (297)
T ss_dssp HHHHHHHCS-EEEEEC-----------CCCCCCBCSSEEEC---------------------------------CCCEEE
T ss_pred HHHHHhcCC-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCCC-------------------CccEEEEE
Confidence 999988775 56666655434456799887663 55 89999999863211 35789999
Q ss_pred EEEEcHHHHHHHHHhhCCC-CCCh-hhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCCC
Q 043870 309 IYLFKTEVLLKVLRWHYPE-ANDF-GSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPP 375 (526)
Q Consensus 309 iyif~~~~l~~ll~~~~~~-~~d~-~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~ 375 (526)
+|+|++++|. .++...++ ...+ ..++++.++++.++.++.++++|.||||++||.+|+..++...+
T Consensus 215 iyi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~~~ 282 (297)
T 2ux8_A 215 RYILQPEVMR-ILENQGKGAGGEIQLTDAMQRMIGDQPFHGVTFQGTRYDCGDKAGFIQANLAVALSRP 282 (297)
T ss_dssp EEEECTHHHH-HHHHTC--------CCTTGGGGTTTSCEEEEECSSEEEETTSHHHHHHHHHHHHHHCT
T ss_pred EEEECHHHHH-HHHhhCCCCCCeeEHHHHHHHHHhcCCEEEEEecceEEeCCCHHHHHHHHHHHHhcCh
Confidence 9999999774 55654332 1122 36788888887899999999999999999999999987765443
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-31 Score=264.84 Aligned_cols=246 Identities=20% Similarity=0.296 Sum_probs=179.1
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc--
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF-- 169 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~-- 169 (526)
.|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+.+.+|+.+.+.+..+..+
T Consensus 2 ~~~avIlAaG~gtRl~~lt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~ 80 (259)
T 1tzf_A 2 ASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHM 80 (259)
T ss_dssp CCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEG
T ss_pred CcEEEEECCCCcccCCCccCCCCccccEECCE-EHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhcccccccccccc
Confidence 47999999999999999999999999999999 999999999999999999999999988888898753200000100
Q ss_pred CCCeEEEEecccccCc---CCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEE
Q 043870 170 GDGFVEVLAATQRQGE---SGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVC 246 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~---~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~ 246 (526)
....+.++.....+.+ ..+....||+++++.++..++ ..++|++++||+++..++.++++.|.+.++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~-----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~ 155 (259)
T 1tzf_A 81 AENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK-----DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLT 155 (259)
T ss_dssp GGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT-----TSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEE
T ss_pred cccceeeeeccccccceeeeecccccCcHHHHHHHHHhcC-----CCCcEEEEECCEecccCHHHHHHHHHHhCCeEEEE
Confidence 0001111110000000 000113799999999887773 13789999999999999999999998888887765
Q ss_pred EEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC
Q 043870 247 CLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP 326 (526)
Q Consensus 247 ~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~ 326 (526)
.. .+ +..||++..| +|+|..|.|||... .+++++|+|+|++++|. .++.
T Consensus 156 ~~--~~--~~~~g~v~~~-~g~v~~~~ekp~~~----------------------~~~~~~Giy~~~~~~l~-~l~~--- 204 (259)
T 1tzf_A 156 AT--FP--PGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVID-LIDN--- 204 (259)
T ss_dssp EE--CC--CCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGGG-GCCS---
T ss_pred Ee--cC--CCCccEEEEc-CCEEEEEEecCCCC----------------------CceEEEEEEEeCHHHHH-hhcc---
Confidence 43 22 4579999888 89999999998642 35899999999999884 3321
Q ss_pred CCCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCC
Q 043870 327 EANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKP 374 (526)
Q Consensus 327 ~~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~ 374 (526)
...+|..++++.++++.++.+|.++++|.||||++||.+|+..+....
T Consensus 205 ~~~~~~~~~i~~~~~~~~v~~~~~~~~~~dI~t~~d~~~a~~~~~~~~ 252 (259)
T 1tzf_A 205 DATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGK 252 (259)
T ss_dssp TTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHcCCEEEEEeCcEEEeCCCHHHHHHHHHHHhcCC
Confidence 223466788888887779999999999999999999999999887644
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=271.64 Aligned_cols=249 Identities=20% Similarity=0.303 Sum_probs=189.4
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCC-----
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGD----- 165 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~----- 165 (526)
+.|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+...+.|..
T Consensus 11 ~~~~aVIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~ 89 (323)
T 2pa4_A 11 AVKTVVVPAAGLGTRFLPATKTVPKELLPVVDT-PGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMER 89 (323)
T ss_dssp -CCEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHT
T ss_pred cceEEEEECCCCccccCccccCCCceeeeECCE-EHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhcc
Confidence 458999999999999999999999999999999 99999999999999999999999998888888764321100
Q ss_pred ----------CcccCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecc--cCHHHHH
Q 043870 166 ----------GMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYR--MDYMDFV 233 (526)
Q Consensus 166 ----------~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~--~dl~~ll 233 (526)
...++ ..+.++. +. +..||+++++.++..+.+ ..+.|+|++||++++ .++.+++
T Consensus 90 ~~~~~~~~~~~~~~g-~~i~~~~--~~-------~~~Gt~~al~~a~~~l~~----~~d~~lv~~~D~~~~~~~~l~~l~ 155 (323)
T 2pa4_A 90 GKTDQVEIIRRAADL-IKAVPVT--QD-------KPLGLGHAVGLAESVLDD----DEDVVAVMLPDDLVLPTGVMERMA 155 (323)
T ss_dssp TCHHHHHHTTHHHHH-CEEEEEE--CS-------SCCCHHHHHHTTGGGSCS----SCCEEEEECTTEEEESSCHHHHHH
T ss_pred chhhhhhhhhccccC-cceEEEe--CC-------ccCCcHHHHHHHHHHhcC----CCCeEEEEeCCcccCchHHHHHHH
Confidence 00001 1133332 22 247999999998876642 123399999999886 5699999
Q ss_pred HHHHHcCCcEEEEEEEccCCcCCCceEEEEc----CCC--CeeeeeccCCccccccccccccccccchhhhcCCCceeee
Q 043870 234 QHHINSGGDISVCCLPVDESRASDFGLMKID----ETG--RIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASM 307 (526)
Q Consensus 234 ~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d----~~g--~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~ 307 (526)
+.|.+.++ .++++.+++...+..||++..| +++ +|..|.|||..... .++++++
T Consensus 156 ~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~~~-------------------~~~~~~~ 215 (323)
T 2pa4_A 156 QVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDA-------------------PSRLAAT 215 (323)
T ss_dssp HHHHTTCS-EEEEEEECCGGGGGGSEEEEEEECCSSTTEEEEEEEEESCCTTTC-------------------SCSEEEE
T ss_pred HHHHhcCC-cEEEEEEecccccCCccEEEeCCcccCCCceeEEEEEECCCCccc-------------------cccEEEE
Confidence 99987765 5677767654456689999887 554 99999999864211 4578999
Q ss_pred eEEEEcHHHHHHHHHhhCCCC-CCh-hhchHhhhhcC-CcEEEEEecceeeecCChhhHHHhchhhcCCCC
Q 043870 308 GIYLFKTEVLLKVLRWHYPEA-NDF-GSEVIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPP 375 (526)
Q Consensus 308 Giyif~~~~l~~ll~~~~~~~-~d~-~~dil~~li~~-~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~ 375 (526)
|+|+|++++|. .++...++. ..+ ..++++.+++. .++.+|.++++|.||||++||.+|+..++...+
T Consensus 216 GiY~~~~~~~~-~l~~~~~~~~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~~~~ 285 (323)
T 2pa4_A 216 GRYLLDRKIFD-ALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSHP 285 (323)
T ss_dssp EEEEEETHHHH-HHHHCCCCGGGCCCHHHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHHHTCT
T ss_pred EEEEECHHHHH-HHHhhCCCCCCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhhcCh
Confidence 99999999885 555543321 122 36888888876 899999999999999999999999987765443
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=262.74 Aligned_cols=233 Identities=23% Similarity=0.363 Sum_probs=185.8
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEec-cChhHHHHHhhhcccCCCCcccC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQ-FNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~-~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
+|+|||||||.||||+|+|..+||+|+||+|+ |||+|++++|..+|+++|+|+++ +..+.+.+++.+.. +|+
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~g~------~~g 74 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGS------NWG 74 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSG------GGT
T ss_pred CceEEEECCCCCCcCccccCCCCceeCeECCE-eHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHhccc------ccC
Confidence 48999999999999999999999999999999 99999999999999999998884 56667778876422 222
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCee-cccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHL-YRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l-~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
.. +.+.. +.. +.|++++++.+.+.+.+ ++++++.||++ +..++.++++.|.+.+.++++++.+
T Consensus 75 ~~-i~~~~--~~~-------~~G~~~al~~a~~~i~~------~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~ 138 (293)
T 1fxo_A 75 LD-LQYAV--QPS-------PDGLAQAFLIGESFIGN------DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYH 138 (293)
T ss_dssp CE-EEEEE--CSS-------CCCGGGHHHHTHHHHTT------SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEE
T ss_pred ce-EEEee--CCC-------CCCHHHHHHHHHHHhCC------CCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEE
Confidence 11 33332 221 37999999999888863 78999999995 4678999999998777778888877
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-C
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-A 328 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-~ 328 (526)
+.+ +..||++.+|++|+|..|.|||..+ .++++++|+|+|+++++. .++...+. .
T Consensus 139 v~d--p~~~g~v~~d~~g~v~~~~ekp~~~---------------------~s~~~~~Giy~~~~~~l~-~~~~~~~~~~ 194 (293)
T 1fxo_A 139 VLD--PERYGVVEFDQGGKAISLEEKPLEP---------------------KSNYAVTGLYFYDQQVVD-IARDLKPSPR 194 (293)
T ss_dssp CSC--GGGSEEEEECTTSCEEEEEESCSSC---------------------SSSEEEEEEEEECTTHHH-HHHHCCCCTT
T ss_pred CCC--cccCcEEEECCCCcEEEEEECCCCC---------------------CCCeEEEEEEEEcHHHHH-HHHhcCcccC
Confidence 765 5579999999999999999998643 356899999999999985 44543332 2
Q ss_pred CCh-hhchHhhhhcCCcEEEEEec-ce-eeecCChhhHHHhchhhc
Q 043870 329 NDF-GSEVIPMATKDFNVQAYLFN-DY-WEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 329 ~d~-~~dil~~li~~~~V~~~~~~-~~-w~dIgt~~d~~~An~~ll 371 (526)
.++ ..++++.+++..++.++... ++ |.||||++||.+|+..+.
T Consensus 195 ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 240 (293)
T 1fxo_A 195 GELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 240 (293)
T ss_dssp SSCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHhcCCeEEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence 223 36788888887788888775 75 999999999999988764
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=260.80 Aligned_cols=233 Identities=22% Similarity=0.364 Sum_probs=185.1
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEec-cChhHHHHHhhhcccCCCCcccC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQ-FNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~-~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
+|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++.|..+|+++|+|+++ +..+.+.+++.+.. +|+
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~~g~------~~g 75 (295)
T 1lvw_A 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGS------QFG 75 (295)
T ss_dssp SCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSG------GGT
T ss_pred ceEEEEECCCCCCccccccCCCCceecEECCe-eHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhhhcc------ccC
Confidence 37999999999999999999999999999999 99999999999999999999886 66677778876422 222
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCee-cccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHL-YRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l-~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
.. +.++. +.. +.|++++++.+...+.+ ++++++.||++ +..++.++++.|.+.+.++++++.+
T Consensus 76 ~~-i~~~~--~~~-------~~G~~~al~~a~~~i~~------~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~ 139 (295)
T 1lvw_A 76 VR-FSYRV--QEE-------PRGIADAFIVGKDFIGD------SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYY 139 (295)
T ss_dssp SE-EEEEE--CSS-------CCCGGGHHHHTHHHHTT------SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEE
T ss_pred ce-EEEee--CCC-------CCChHHHHHHHHHHhCC------CcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEE
Confidence 11 33332 221 37999999999888853 67888889994 4678999999998777778888877
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-C
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-A 328 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-~ 328 (526)
+.+ +..||++.+|++|+|..|.|||..+ .++++++|+|+|+++++. .++...+. .
T Consensus 140 v~d--p~~~g~v~~d~~g~v~~~~ekp~~~---------------------~s~~~~~Giy~f~~~~l~-~~~~~~~~~~ 195 (295)
T 1lvw_A 140 VRD--PRPFGVVEFDSEGRVISIEEKPSRP---------------------KSNYVVPGLYFYDNQVVE-IARRIEPSDR 195 (295)
T ss_dssp CSC--CTTSEEEEECTTSBEEEEEESCSSC---------------------SCSEECCSEEEECTTHHH-HHHHCCCCTT
T ss_pred CCC--cccCCEEEECCCCcEEEEEECCCCC---------------------CCCEEEEEeEEEcHHHHH-HHHhcCCccc
Confidence 765 4579999999999999999998643 356899999999999985 44443332 2
Q ss_pred CCh-hhchHhhhhcCCcEEEEEec-ce-eeecCChhhHHHhchhhc
Q 043870 329 NDF-GSEVIPMATKDFNVQAYLFN-DY-WEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 329 ~d~-~~dil~~li~~~~V~~~~~~-~~-w~dIgt~~d~~~An~~ll 371 (526)
.++ ..++++.+++..++.++... ++ |.||||++||.+|+..+.
T Consensus 196 ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (295)
T 1lvw_A 196 GELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp SCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHHcCCcEEEEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence 222 36778888877778777775 75 999999999999998764
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=265.44 Aligned_cols=255 Identities=16% Similarity=0.179 Sum_probs=188.4
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceee--CCcchhHHHHHHHHHhcCCcEEEEEeccCh-hHHHHHhhhcccCCCC
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPI--GGCYRLIDVPMSNCINSGIKKIYILTQFNS-QSLNRHISRTYNLGDG 166 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV--~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~-~~l~~~l~~~~~~~~~ 166 (526)
+++|.|||||||.|+||+| ||+|+|| +|+ |||+|+++++.++|+++|+|++++.. +.+.+|+.+.+.++.
T Consensus 3 ~m~~~~vIlAaG~g~R~~~-----~K~l~~ig~~g~-pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~- 75 (303)
T 3pnn_A 3 AMKPTLFVLAAGMGSRYGS-----LKQLDGIGPGGD-TIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKYEGRI- 75 (303)
T ss_dssp CCCCEEEEECTTCBCTTSS-----BCCCCCCSTTSC-CHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHHHTTTS-
T ss_pred CCceEEEEECCCCcccCCC-----CceEeEcCCCCe-eHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHHhccCC-
Confidence 5568999999999999997 7999999 599 99999999999999999999999984 788899876543221
Q ss_pred cccCCCeEEEEecccc---cC---cCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHH-
Q 043870 167 MNFGDGFVEVLAATQR---QG---ESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHIN- 238 (526)
Q Consensus 167 ~~~~~~~v~vl~~~~~---~~---~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~- 238 (526)
.+.++..... .+ .....++.||+++|++++++++ ++|+|++||++++.+ +.++++.|.+
T Consensus 76 ------~i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i~-------~~~lV~~gD~l~~~~~~~~l~~~~~~~ 142 (303)
T 3pnn_A 76 ------PVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIR-------EPFAVINADDFYGRNGFEVLARKLMTL 142 (303)
T ss_dssp ------CEEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTCC-------SCEEEEESSCBCCHHHHHHHHHHHHTT
T ss_pred ------cEEEEecccccccccccccccccccCCcHHHHHHHHHhcC-------CCEEEEECCeecCHHHHHHHHHHHHHh
Confidence 1333332200 00 0001235899999999987773 789999999999887 8999999976
Q ss_pred --cCCcEEEEEEEccCCcCCCc-----eEEEEcCCCCeeeeeccCCcccccc---c-cccccccccchhhhcCCCceeee
Q 043870 239 --SGGDISVCCLPVDESRASDF-----GLMKIDETGRIRQFLEKPKGENLRS---M-QIDTTALGLSAQEARNFPYIASM 307 (526)
Q Consensus 239 --~~ad~ti~~~~~~~~~~~~~-----g~v~~d~~g~V~~~~eKp~~~~~~~---~-~~~~~~l~~s~~~~~~~~~l~~~ 307 (526)
+++++++++.+++++ .++| |++.+|++|+|+.|.|||....... . ......+. ...++++++
T Consensus 143 ~~~~~~~~v~~~~~~~~-~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~------~~~~~~i~~ 215 (303)
T 3pnn_A 143 EGKQGEYCMVGYRVGNT-LSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDETGKICT------LAEDAPVSM 215 (303)
T ss_dssp TTCSSEEEEEEEEGGGS-CBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEECTTSCEEE------ECTTCEEEE
T ss_pred ccccCceEEEEEECCCc-cCccCceeeeeEeeCCCCcEEEEEECCCCcccccccccccccccccc------CCCCCEEEE
Confidence 578899999888653 1445 6888998999999999997531000 0 00000000 014679999
Q ss_pred eEEEEcHHHHHHHHHh--------hCC--CCCChhhchHhhhhcCC--cEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 308 GIYLFKTEVLLKVLRW--------HYP--EANDFGSEVIPMATKDF--NVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 308 Giyif~~~~l~~ll~~--------~~~--~~~d~~~dil~~li~~~--~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
|+|+|++++|.. ++. ..+ ....+..++++.++++. +|.+|.++++|.||||+++|.+|+..+.+
T Consensus 216 GiY~f~~~~~~~-l~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~ 291 (303)
T 3pnn_A 216 NMWGFTPDYFDY-SEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRE 291 (303)
T ss_dssp EEEEECTHHHHH-HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHH
T ss_pred EEEEECHHHHHH-HHHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHH
Confidence 999999999864 432 111 12234578888888765 79999999999999999999999988754
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=262.61 Aligned_cols=233 Identities=25% Similarity=0.360 Sum_probs=185.2
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEec-cChhHHHHHhhhcccCCCCcccC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQ-FNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~-~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
.|++||||||.||||+|+|..+||+|+||+|+ |||+|++++|..+|+++|+|+++ ++.+.+.+++.+.. +|+
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~g~------~~g 75 (296)
T 1mc3_A 3 HMKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGS------EFG 75 (296)
T ss_dssp CCEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSG------GGT
T ss_pred ccEEEEECCCCCCcCCcccCCCCceeeEECCe-eHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHhccc------ccC
Confidence 37999999999999999999999999999999 99999999999999999999986 66677778876422 222
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCee-cccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHL-YRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l-~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
.. +.++. +. .+.|++++++.+...+.+ ++++++.||++ +..++.++++.|.+.+.++++++.+
T Consensus 76 ~~-i~~~~--~~-------~~~G~~~al~~a~~~i~~------~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~ 139 (296)
T 1mc3_A 76 IQ-LEYAE--QP-------SPDGLAQAFIIGETFLNG------EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQ 139 (296)
T ss_dssp CE-EEEEE--CS-------SCCCSTHHHHHTHHHHTT------SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEE
T ss_pred ce-EEEec--cC-------CCCCHHHHHHHHHHHhCC------CCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEE
Confidence 11 33332 22 137999999999988863 67888889984 4678999999997766778888877
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-C
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-A 328 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-~ 328 (526)
+.+ +..||++.+|++|+|..|.|||..+ .++++++|+|+|+++++. .++...+. .
T Consensus 140 v~d--p~~yg~v~~d~~g~v~~~~ekp~~~---------------------~s~~~~~Giy~~~~~~l~-~~~~~~~~~~ 195 (296)
T 1mc3_A 140 VMD--PERFGVVEFDDNFRAISLEEKPKQP---------------------KSNWAVTGLYFYDSKVVE-YAKQVKPSER 195 (296)
T ss_dssp CSC--CSSSBBCEEETTEEEEECCBSCSSC---------------------SCSEEEEEEEECCTHHHH-HHHSCCCCSS
T ss_pred CCC--cccCCEEEECCCCcEEEEEECCCCC---------------------CCCEEEEEEEEEcHHHHH-HHHhcCcccc
Confidence 765 4579999999999999999998643 356899999999999985 55544332 2
Q ss_pred CCh-hhchHhhhhcCCcEEEEEec-ce-eeecCChhhHHHhchhhc
Q 043870 329 NDF-GSEVIPMATKDFNVQAYLFN-DY-WEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 329 ~d~-~~dil~~li~~~~V~~~~~~-~~-w~dIgt~~d~~~An~~ll 371 (526)
.++ ..++++.+++..++.++... ++ |.||||++||.+|+..+.
T Consensus 196 ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (296)
T 1mc3_A 196 GELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQ 241 (296)
T ss_dssp SSCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHhcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 222 36788888877778888775 75 999999999999998764
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=258.12 Aligned_cols=230 Identities=13% Similarity=0.115 Sum_probs=171.2
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHh-cCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCe
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCIN-SGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGF 173 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 173 (526)
+||||||.||||+|+|..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+ +.+++.+... +++...
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~gk-pli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~-----~~~~~~ 74 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQ-TLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKAT-----QLGIKQ 74 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEETTE-EHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHH-----HHTCSS
T ss_pred EEEEcCCCCcccccCCCCCCccccEECCe-EHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHH-----HcCCCC
Confidence 79999999999999999999999999999 999999999999 799999999998876 5555543320 011111
Q ss_pred EEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeec-ccCHHHHHHHHHHcCCcEEEEEEEccC
Q 043870 174 VEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLY-RMDYMDFVQHHINSGGDISVCCLPVDE 252 (526)
Q Consensus 174 v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~-~~dl~~ll~~h~~~~ad~ti~~~~~~~ 252 (526)
+.+... +. +..||++|+++++..+.+......++|+|++||+++ +.++.++ ..+++.++++.++++
T Consensus 75 ~~~~~~-~~-------~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~~ 141 (255)
T 4evw_A 75 FYIAEL-HT-------ETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGGG 141 (255)
T ss_dssp EEEEEE-SS-------CCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECCS
T ss_pred ceEEEe-CC-------CCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecCC
Confidence 221111 11 247999999999998831000123789999999988 4556543 246778998888765
Q ss_pred CcCCCceEEEEcCCC--CeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHH-HHHHHHHh----hC
Q 043870 253 SRASDFGLMKIDETG--RIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTE-VLLKVLRW----HY 325 (526)
Q Consensus 253 ~~~~~~g~v~~d~~g--~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~-~l~~ll~~----~~ 325 (526)
+ .||++..|++| +|.+|.||+. .++++++|+|+|++. .|.+.+.. ..
T Consensus 142 --p-~yG~v~~d~~g~~~V~~i~EK~~-----------------------~s~~~~~GiY~f~~~~~~~~~l~~~i~~~~ 195 (255)
T 4evw_A 142 --D-NWSFAKPEHAGSTKVIQTAEKNP-----------------------ISDLCSTGLYHFNRKEDYLEAYREYVARPS 195 (255)
T ss_dssp --S-CSCEEEESSTTCCBEEEEESSSC-----------------------SSSEEEEEEEEESCHHHHHHHHHHHHTSCG
T ss_pred --C-ceeEEEECCCCCeEEEEEEeccC-----------------------ccCcEEEeEEEECcHHHHHHHHHHHHhccc
Confidence 3 79999999888 9999999943 356899999999985 34333332 11
Q ss_pred C---CCCChhhchHhhhhc-CCcEEEEEec-ceeeecCChhhHHHhchhh
Q 043870 326 P---EANDFGSEVIPMATK-DFNVQAYLFN-DYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 326 ~---~~~d~~~dil~~li~-~~~V~~~~~~-~~w~dIgt~~d~~~An~~l 370 (526)
+ ....+..++++.+++ +.++.++.++ ++|.|+|||++|.+|+..-
T Consensus 196 ~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~~ 245 (255)
T 4evw_A 196 QEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQP 245 (255)
T ss_dssp GGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC-
T ss_pred ccccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhcC
Confidence 1 223345789999877 4679999986 9999999999999997643
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=256.29 Aligned_cols=240 Identities=18% Similarity=0.339 Sum_probs=155.4
Q ss_pred ceEEEEEcCCCCccccCccC-CCCccceee-CCcchhHHHHHHHHHhcCCcEEEEEeccCh-hHHHHHhhhcccCCCCcc
Q 043870 92 AVASIILGGGAGTRLFPLTG-RRAKPAVPI-GGCYRLIDVPMSNCINSGIKKIYILTQFNS-QSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~-~~pK~LlpV-~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~-~~l~~~l~~~~~~~~~~~ 168 (526)
+|+|||||||.|+||+|||. .+||+|+|| +|+ |||+|+++++.++ +++|+|++++.. +.+.+++.+.+
T Consensus 4 ~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~-pli~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~~~~------- 74 (308)
T 2qh5_A 4 KIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHK-SLFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNEI------- 74 (308)
T ss_dssp CEEEEEECC-------------CCGGGCTTBTTB-CHHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTTTTC-------
T ss_pred ccEEEEEcCCCCccCCccCCCCCCCEEEECCCCC-CHHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHHHhh-------
Confidence 48999999999999999996 799999999 588 9999999999999 999999999875 46667775322
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeec-ccC-HHHHHHH---HHHcCCcE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLY-RMD-YMDFVQH---HINSGGDI 243 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~-~~d-l~~ll~~---h~~~~ad~ 243 (526)
+...+.++.. . ++.||+++++.+...+.. .+.|++++||+++ +.+ +.++++. |.+.++++
T Consensus 75 -~~~~~~~i~~--~-------~~~gt~~al~~a~~~l~~-----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (308)
T 2qh5_A 75 -KNKSVGFLLE--S-------LSKNTANAIALSALMSDK-----EDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLV 139 (308)
T ss_dssp -SSCEEEEEEE--S-------SCCCHHHHHHHHHHTSCT-----TSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred -CCCccEEEeC--C-------CCCChHHHHHHHHHHhCC-----CCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEE
Confidence 1111333332 1 137999999999877741 2459999999987 666 8999987 77777888
Q ss_pred EEEEEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHh
Q 043870 244 SVCCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 244 ti~~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
|+.+.+.++ +..||++..|++++|..|.|||.......+ ....++++++|+|+|++++|.+.++.
T Consensus 140 t~~~~~~~~--~~~~g~i~~d~~~~V~~~~Ekp~~~~~~~~-------------~~~g~~~~n~Giy~~~~~~ll~~l~~ 204 (308)
T 2qh5_A 140 TFGVSIDKP--NTEFGYIESPNGLDVKRFIEKPSLDKAIEF-------------QKSGGFYFNSGMFVFQAGVFLDELKK 204 (308)
T ss_dssp EEEEECSSC--CTTSEEEECSSSSBCSEEEESCCHHHHHHH-------------HHHCCEEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEecCCC--CCCceEEEECCCCEEEEEEECCChHHHHHH-------------hhcCCeEEEeEEEEEEHHHHHHHHHH
Confidence 888877644 457999988878999999999875321000 00125789999999999987556554
Q ss_pred hCCC------------C------CChh---hchHh--------h-hhc-CCcEEEEEecceeeecCChhhHHHhchhh
Q 043870 324 HYPE------------A------NDFG---SEVIP--------M-ATK-DFNVQAYLFNDYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 324 ~~~~------------~------~d~~---~dil~--------~-li~-~~~V~~~~~~~~w~dIgt~~d~~~An~~l 370 (526)
..|. . .++. .++++ . +++ +.++.++.++++|.||||+++|.+|+...
T Consensus 205 ~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~ 282 (308)
T 2qh5_A 205 HAPTILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANE 282 (308)
T ss_dssp HCHHHHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC--------------
T ss_pred hChHHHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcC
Confidence 3221 0 1111 24443 2 454 47899999999999999999999998754
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=245.37 Aligned_cols=233 Identities=18% Similarity=0.299 Sum_probs=170.8
Q ss_pred eEEEEEcCCCCccccCcc-CCCCccceeeCC-cchhHHHHHHHHHhc-CCcEEEEEeccCh-hHHHHHhhhcccCCCCcc
Q 043870 93 VASIILGGGAGTRLFPLT-GRRAKPAVPIGG-CYRLIDVPMSNCINS-GIKKIYILTQFNS-QSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt-~~~pK~LlpV~g-~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~-~~l~~~l~~~~~~~~~~~ 168 (526)
|.+||||||.||||+||| ..+||+|+|++| + |||+|+++++.++ |+++|+|++++.. +.+.+++.+.. .
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~-pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~------~ 74 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNK-SLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELP------D 74 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTB-CHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSC------G
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECCCCC-cHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhccc------c
Confidence 789999999999999999 779999999999 7 9999999999997 8999999999874 45666765311 0
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeeccc--CH----HHHHHHHHHcCCc
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRM--DY----MDFVQHHINSGGD 242 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~--dl----~~ll~~h~~~~ad 242 (526)
+ .+ ++. + +..||++++..+...+. ..+.+++++||+++.. ++ ..+++.|.+.++.
T Consensus 75 ~---~i-i~e---~-------~~~gta~ai~~a~~~~~-----~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~ 135 (336)
T 2x65_A 75 E---NI-IAE---P-------MKKNTAPACFIGTKLAD-----DDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGL 135 (336)
T ss_dssp G---GE-EEE---S-------SCCCHHHHHHHHHTTSC-----TTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSE
T ss_pred c---eE-EeC---C-------CCCCcHHHHHHHHHhhC-----CCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCe
Confidence 1 12 221 1 13699999998875442 2367999999997754 44 4445557665777
Q ss_pred EEEEEEEccCCcCCCceEEEEcCC-----CCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHH
Q 043870 243 ISVCCLPVDESRASDFGLMKIDET-----GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVL 317 (526)
Q Consensus 243 ~ti~~~~~~~~~~~~~g~v~~d~~-----g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l 317 (526)
+|+.+.+..+ .+.||++..+++ ++|..|.|||.....+.+ .....+++++|+|+|++++|
T Consensus 136 vt~~i~p~~~--~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~-------------~~~g~y~~n~Giy~~~~~~l 200 (336)
T 2x65_A 136 FTFGIVPTRP--ETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKF-------------VESGRFLWNSGMFLWKAREF 200 (336)
T ss_dssp EEEEECCCSC--CSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHH-------------HHHTCEEEEEEEEEEEHHHH
T ss_pred EEEEeecccC--CCCceEEEECCccCCCccEEEEEEECCChHHHHHH-------------HhcCCeEEEeeeEEEEHHHH
Confidence 7877766543 357999998765 799999999975421100 01134799999999999988
Q ss_pred HHHHHhhCCCC----------C-ChhhchHhh---------hhc-CCcEEEEEecceeeecCChhhHHHh
Q 043870 318 LKVLRWHYPEA----------N-DFGSEVIPM---------ATK-DFNVQAYLFNDYWEDIGTIKSFFDA 366 (526)
Q Consensus 318 ~~ll~~~~~~~----------~-d~~~dil~~---------li~-~~~V~~~~~~~~w~dIgt~~d~~~A 366 (526)
.+.++...|+. . +|..++++. +++ ..++++++++++|.||||+++|.++
T Consensus 201 l~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 201 IEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp HHHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 65655543320 1 333455654 344 4789999999999999999999999
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=234.60 Aligned_cols=222 Identities=16% Similarity=0.235 Sum_probs=161.9
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
++|.|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+++ +.+ +
T Consensus 24 ~~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~-~~~--------~ 93 (254)
T 1jyk_A 24 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLK-EKY--------G 93 (254)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHH-HHH--------C
T ss_pred cCceEEEECCCCcccCCcccCCCCCEEeeECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHH-HhC--------C
Confidence 458999999999999999999999999999999 999999999999999999999998877664333 332 1
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
+.++...+. ...|++++++.++..++ ++++++||+++..++ ++.+.+.++.+++ ..
T Consensus 94 ---~~iv~~~~~-------~~~g~~~al~~a~~~~~--------~~lv~~~D~~~~~~~---~~~~~~~~~~~t~---~~ 149 (254)
T 1jyk_A 94 ---VRLVFNDKY-------ADYNNFYSLYLVKEELA--------NSYVIDADNYLFKNM---FRNDLTRSTYFSV---YR 149 (254)
T ss_dssp ---CEEEECTTT-------TTSCTHHHHHTTGGGCT--------TEEEEETTEEESSCC---CCSCCCSEEEEEC---EE
T ss_pred ---cEEEECCCc-------cCCCcHHHHHHHHHHCC--------CEEEEeCCcccCHHH---HHHHHhCCceEEE---Ec
Confidence 344443221 12689999988765553 489999999776563 2222222222232 22
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHH---HHHHHhhCCC
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVL---LKVLRWHYPE 327 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l---~~ll~~~~~~ 327 (526)
.++ ...|+++ .|++|+|..|.||+. ..++++|+|+|+++.+ ..+++.....
T Consensus 150 ~~~-~~~~~v~-~d~~g~v~~~~e~~~------------------------~~~~~~Giy~~~~~~~~~l~~~l~~~~~~ 203 (254)
T 1jyk_A 150 EDC-TNEWFLV-YGDDYKVQDIIVDSK------------------------AGRILSGVSFWDAPTAEKIVSFIDKAYVS 203 (254)
T ss_dssp SSC-SSCCEEE-ECTTCBEEEEECCCS------------------------SEEBCCSEEEECHHHHHHHHHHHHHHHTT
T ss_pred ccC-CCCeEEE-ECCCCeEEEEEECCC------------------------CCcEEEEEEEEcHHHHHHHHHHHHHHHhc
Confidence 221 1257755 788899999999753 2478999999998743 3344443221
Q ss_pred ---CCChhhchHhhhhcCCcEEEEEec-ceeeecCChhhHHHhchhhcC
Q 043870 328 ---ANDFGSEVIPMATKDFNVQAYLFN-DYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 328 ---~~d~~~dil~~li~~~~V~~~~~~-~~w~dIgt~~d~~~An~~ll~ 372 (526)
...+.+++++.++++.++.++.++ ++|.+|||++||.+|+..+..
T Consensus 204 ~~~~e~~~~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~~ 252 (254)
T 1jyk_A 204 GEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILKN 252 (254)
T ss_dssp TCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC-
T ss_pred CCccccCHHHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHHHHHHHhhh
Confidence 233456788888888899999988 799999999999999987754
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=237.37 Aligned_cols=233 Identities=19% Similarity=0.280 Sum_probs=166.4
Q ss_pred ceEEEEEcCCCCccccCcc-CCCCccceeeCC-cchhHHHHHHHHHhc-CCcEEEEEeccChh-HHHHHhhhcccCCCCc
Q 043870 92 AVASIILGGGAGTRLFPLT-GRRAKPAVPIGG-CYRLIDVPMSNCINS-GIKKIYILTQFNSQ-SLNRHISRTYNLGDGM 167 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt-~~~pK~LlpV~g-~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~-~l~~~l~~~~~~~~~~ 167 (526)
.|.+||||||.||||+||| ..+||+|+|++| + |||+|+++++.++ |+++|+|++++... .+.+++..
T Consensus 2 ~m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~-pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~-------- 72 (337)
T 2cu2_A 2 KTYALVMAGGRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG-------- 72 (337)
T ss_dssp CEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGC-BHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS--------
T ss_pred CeEEEEEcCCCcccCCccCCCCCCceEEEcCCCC-hHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc--------
Confidence 4899999999999999999 689999999999 7 9999999999998 89999999998642 33333321
Q ss_pred ccCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeeccc--CHHHHHH----HHHHcCC
Q 043870 168 NFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRM--DYMDFVQ----HHINSGG 241 (526)
Q Consensus 168 ~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~--dl~~ll~----~h~~~~a 241 (526)
..+ ++. + +..||+.++..+.. +... ...+.+++++||+++.. .+.++++ .|.+ ++
T Consensus 73 ----~~~-i~e---~-------~~~gta~ai~~a~~-l~~~--~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~ 133 (337)
T 2cu2_A 73 ----IRL-LLE---P-------LGRDTAGAVLLGVA-EALK--EGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GF 133 (337)
T ss_dssp ----SEE-EEE---S-------SCCHHHHHHHHHHH-HHHH--HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TC
T ss_pred ----Cce-Eec---C-------CCCCcHHHHHHHHH-Hhcc--CCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CC
Confidence 112 222 1 13689999998887 5310 12478999999997653 3544444 3433 66
Q ss_pred cEEEEEEEccCCcCCCceEEEEcCC----CCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHH
Q 043870 242 DISVCCLPVDESRASDFGLMKIDET----GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVL 317 (526)
Q Consensus 242 d~ti~~~~~~~~~~~~~g~v~~d~~----g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l 317 (526)
.+|+.+.+..+ ...||++..+++ ++|..|.|||.....+. ... ..+++++|+|+|++++|
T Consensus 134 ~vt~~i~p~~~--~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~-------------~~~-~g~~~n~Giy~f~~~~l 197 (337)
T 2cu2_A 134 VVALGLRPTRP--ETEYGYIRLGPREGAWYRGEGFVEKPSYAEALE-------------YIR-KGYVWNGGVFAFAPATM 197 (337)
T ss_dssp EEEEEECCSSC--CSSSCEEEEEEEETTEEEEEEEECCCCHHHHHH-------------HHH-TTCEEEEEEEEECHHHH
T ss_pred eEEEeeccCCC--CCCceEEEECCcccccCeEEEEEeCCChHHHHH-------------Hhh-cCCEEEEEEEEEeHHHH
Confidence 77777766543 457999998766 89999999997532110 000 12799999999999988
Q ss_pred HHHHHhhCCCCC-Ch--------hhchHhh---------hhc-CCcEEEEEecceeeecCChhhHHHhch
Q 043870 318 LKVLRWHYPEAN-DF--------GSEVIPM---------ATK-DFNVQAYLFNDYWEDIGTIKSFFDANL 368 (526)
Q Consensus 318 ~~ll~~~~~~~~-d~--------~~dil~~---------li~-~~~V~~~~~~~~w~dIgt~~d~~~An~ 368 (526)
.+.++...|+.. .+ ..+.++. +++ ..++++++++++|.||||+++|.++..
T Consensus 198 l~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~~ 267 (337)
T 2cu2_A 198 AELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVFS 267 (337)
T ss_dssp HHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHHT
T ss_pred HHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHhh
Confidence 666665433210 01 1233443 343 578999999999999999999999864
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=220.58 Aligned_cols=239 Identities=14% Similarity=0.203 Sum_probs=172.5
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
++.|||||||.||||. ||+|+||+|+ |||+|+++++.++|+++|+|+++ .+.+.+++.+ + +
T Consensus 2 ~~~aiIlA~G~stRlp------~K~L~~i~Gk-Pli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~~-~--------g- 62 (252)
T 3oam_A 2 SFTVVIPARYQSTRLP------GKPLADIGGK-PMIQWVYEQAMQAGADRVIIATD--DERVEQAVQA-F--------G- 62 (252)
T ss_dssp CEEEEEECCCCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH-T--------T-
T ss_pred ceEEEEecCcCCCCCC------CcceeeECCE-EHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHHH-c--------C-
Confidence 5799999999999993 8999999999 99999999999999999999995 4677777753 2 1
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ec-ccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LY-RMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~-~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
+.+....+. ++.||++ +..+...+.. ...+.|++++||. ++ ..++.++++.|.+.++++++++.+
T Consensus 63 --~~v~~~~~~-------~~~Gt~~-~~~~~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~ 129 (252)
T 3oam_A 63 --GVVCMTSPN-------HQSGTER-LAEVVAKMAI---PADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVE 129 (252)
T ss_dssp --CEEEECCTT-------CCSHHHH-HHHHHHHTTC---CTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEE
T ss_pred --CEEEEcCCC-------CCCcHHH-HHHHHHhcCc---CCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeee
Confidence 333332222 2468887 5555555520 1247899999999 44 456999999998888899999988
Q ss_pred ccCCcCCCc-----eEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhh
Q 043870 250 VDESRASDF-----GLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWH 324 (526)
Q Consensus 250 ~~~~~~~~~-----g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~ 324 (526)
+++ +.+| |.+..|++|+++.|.+||........... ......+++.++|+|+|++++|..+....
T Consensus 130 v~~--~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~~~--------~~~~~~~~~~n~GiY~~~~~~l~~~~~~~ 199 (252)
T 3oam_A 130 IED--EAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKA--------DKAIVQPLLRHIGIYAYRAGFINTYLDWQ 199 (252)
T ss_dssp ECC--HHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHHSS--------SCCCCSCEEEEEEEEEEETTHHHHHHHSC
T ss_pred cCC--HHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCccccc--------cccccccceEEEEEEEcCHHHHHHHHcCC
Confidence 876 3345 88999999999999999865321100000 00001468999999999999998776542
Q ss_pred CCCCCChhh--chHhhhhcCCcEEEEEec-ceeeecCChhhHHHhchhhcCC
Q 043870 325 YPEANDFGS--EVIPMATKDFNVQAYLFN-DYWEDIGTIKSFFDANLSLTDK 373 (526)
Q Consensus 325 ~~~~~d~~~--dil~~li~~~~V~~~~~~-~~w~dIgt~~d~~~An~~ll~~ 373 (526)
+...+..+ +.+..+-.+.+|.++..+ .+|.|||||+||.+|+..+.++
T Consensus 200 -~~~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 200 -PSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp -CCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred -CCcccccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 22111111 234444457899998765 4689999999999999877543
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=206.49 Aligned_cols=236 Identities=17% Similarity=0.171 Sum_probs=163.2
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
+++.|||||||.||||. ||+|+||+|+ |||+|+++++.++|+++|+|+++ .+.+.+++.+ + +
T Consensus 8 M~~~aIIlA~G~stRl~------~K~L~~i~Gk-Pli~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~~-~--------g 69 (256)
T 3tqd_A 8 MEFRVIIPARFDSTRLP------GKALVDIAGK-PMIQHVYESAIKSGAEEVVIATD--DKRIRQVAED-F--------G 69 (256)
T ss_dssp -CCEEEEECCCC---CT------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH-T--------T
T ss_pred CCceEEEEcCCCCCCCC------CCCeeeECCc-hHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH-c--------C
Confidence 46899999999999995 8999999999 99999999999999999999986 4666666652 2 1
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecc-cCHHHHHHHHHHc-CCcEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYR-MDYMDFVQHHINS-GGDISVCC 247 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~-~dl~~ll~~h~~~-~ad~ti~~ 247 (526)
+.++...+ .++.|+.. +..+...+.. ...+.++++.||. ++. ..+.++++.|.+. ++++++++
T Consensus 70 ---~~v~~~~~-------~~~~Gt~~-i~~a~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~ 135 (256)
T 3tqd_A 70 ---AVVCMTSS-------DHQSGTER-IAEAAVALGF---EDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLC 135 (256)
T ss_dssp ---CEEEECCT-------TCCSHHHH-HHHHHHHTTC---CTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEE
T ss_pred ---CeEEEeCC-------CCCCcHHH-HHHHHHHhCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEe
Confidence 33333222 23467765 7777766631 1348899999999 554 4589999998774 56788888
Q ss_pred EEccCC----cCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHh
Q 043870 248 LPVDES----RASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 248 ~~~~~~----~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
.++.+. ++..++ +.+|++|+++.|.+||.+.....+.. ........+++...|+|.|++++|..+...
T Consensus 136 ~~v~~~~~~~~p~~vk-vv~d~~g~~l~fsr~pip~~r~~~~~-------~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l 207 (256)
T 3tqd_A 136 TPITEVDELFNPHSTK-VVLNRRNYALYFSHAPIPWGRDTFSD-------KENLQLNGSHYRHVGIYAYRVGFLEEYLSW 207 (256)
T ss_dssp EECCCHHHHTCTTSCE-EEECTTSBEEEEESSCSSCCTTTTTC-------GGGCCCSSCCEEEEEEEEEEHHHHHHHHHS
T ss_pred eEcCCHHHhhCCCccE-EEECCCCEEeEEecCCCCCCCccccc-------ccccccCCcceEEEEEEEcCHHHHHHHHhC
Confidence 877542 233333 56889999999999987532111000 000001146899999999999999876543
Q ss_pred hCCCCCChh----hchHhhhhcCCcEEEEEecce-eeecCChhhHHHhchh
Q 043870 324 HYPEANDFG----SEVIPMATKDFNVQAYLFNDY-WEDIGTIKSFFDANLS 369 (526)
Q Consensus 324 ~~~~~~d~~----~dil~~li~~~~V~~~~~~~~-w~dIgt~~d~~~An~~ 369 (526)
.+. .++ -+.++.+-.+++++++..+++ |.|||||+||.+|+..
T Consensus 208 -~~s--~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~~ 255 (256)
T 3tqd_A 208 -DAC--PAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAY 255 (256)
T ss_dssp -CCC--HHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHTT
T ss_pred -CCC--cccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHHh
Confidence 232 122 133444556889999999875 8999999999999864
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=207.63 Aligned_cols=238 Identities=16% Similarity=0.190 Sum_probs=167.3
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
.+++.|||||||.||||. +|+|+|++|+ |||+|+++++.++|+++|+|+++ .+.+.+++.+ +
T Consensus 16 ~M~~~aIIlA~G~stRlp------~K~L~~i~Gk-Pmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~~-~-------- 77 (264)
T 3k8d_A 16 HMSFVVIIPARYASTRLP------GKPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVEA-A-------- 77 (264)
T ss_dssp --CCEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH-T--------
T ss_pred CCceEEEEEcCCCCCCCC------CcceeeECCe-EHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH-c--------
Confidence 456899999999999993 5999999999 99999999999999999999995 4666666652 2
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ec-ccCHHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LY-RMDYMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~-~~dl~~ll~~h~~~~ad~ti~~ 247 (526)
+ +.++...+ .++.|+.. +..+...++. ...+.++++.||. ++ ...+.++++.|.+.++++++++
T Consensus 78 g---~~v~~~~~-------~~~~Gt~~-i~~~~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~ 143 (264)
T 3k8d_A 78 G---GEVCMTRA-------DHQSGTER-LAEVVEKCAF---SDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLA 143 (264)
T ss_dssp T---CEEEECCT-------TCCSHHHH-HHHHHHHHTC---CTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEE
T ss_pred C---CEEEEecC-------CCCCCHHH-HHHHHHHhcc---CCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEE
Confidence 1 33332222 23467765 7777766631 1348899999999 44 4568999999988888999999
Q ss_pred EEccCCc-CCCce--EEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhh
Q 043870 248 LPVDESR-ASDFG--LMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWH 324 (526)
Q Consensus 248 ~~~~~~~-~~~~g--~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~ 324 (526)
.++.+.. ..+.+ .+..|++|+++.|.+||.......+.. .+.....+++.++|+|.|++++|..+...
T Consensus 144 ~~v~d~~~~~~p~~vkVv~d~~g~~l~fsr~~ip~~r~~~~~--------~~~~~~~~~~~~~GiY~y~~~~l~~~~~~- 214 (264)
T 3k8d_A 144 VPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAE--------GLETVGDNFLRHLGIYGYRAGFIRRYVNW- 214 (264)
T ss_dssp EECCSHHHHTCTTSCEEEECTTSBEEEEESSCCSCCHHHHHH--------CSSCCCSCCEEECSEEEEEHHHHHHHHHS-
T ss_pred EEcCCHHHccCCCceEEEECCCCeEEEEecCCCCCCCccccc--------cccccCCcceEEEEEEEECHHHHHHHHhC-
Confidence 9887521 11122 245789999999999986421100000 00000135789999999999999877653
Q ss_pred CCCCCChh----hchHhhhhcCCcEEEEEec-ceeeecCChhhHHHhchhh
Q 043870 325 YPEANDFG----SEVIPMATKDFNVQAYLFN-DYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 325 ~~~~~d~~----~dil~~li~~~~V~~~~~~-~~w~dIgt~~d~~~An~~l 370 (526)
.+. .++ -+.++.+-.+++|+++... .+|.+||||+||.+|+..+
T Consensus 215 ~~~--~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l 263 (264)
T 3k8d_A 215 QPS--PLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 263 (264)
T ss_dssp CCC--HHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC
T ss_pred CCC--hhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHh
Confidence 122 222 1234445557899998664 4689999999999998754
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=197.71 Aligned_cols=225 Identities=16% Similarity=0.212 Sum_probs=154.4
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
++.|||||||.|+||+ ||+|+|++|+ |||+|+++++.++ +++|+|++++ +++.+++.+ +
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~i~g~-pli~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~~-~---------- 60 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK------EKPLKNLLGK-PLIRWVVEGLVKT-GERVILATDS--ERVKEVVED-L---------- 60 (234)
T ss_dssp CEEEEEECCSCCTTTT------TGGGCEETTE-EHHHHHHHHHHTT-TSCEEEEESC--HHHHHHHTT-T----------
T ss_pred ceEEEEEcCCCCCCCC------CCcceeECCE-EHHHHHHHHHHHh-CCEEEEECCh--HHHHHHHHh-c----------
Confidence 4789999999999997 9999999999 9999999999999 9999999987 566677642 1
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecc-cCHHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYR-MDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~-~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
+.++...+. +..|+++++ .++..+ ..+.+++++||+ +++ .++.++++.|.+.++.+++....
T Consensus 61 --~~~~~~~~~-------~~~g~~~~~-~~~~~~------~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~ 124 (234)
T 2y6p_A 61 --CEVFLTPSD-------LPSGSDRVL-YVVRDL------DVDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKD 124 (234)
T ss_dssp --SEEEECCTT-------CCSHHHHHH-HHHTTC------CCSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred --eEEEECCcc-------cccchHHHH-HHHHhC------CCCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCC
Confidence 122221111 125677765 333322 237899999999 887 56999999998776434444331
Q ss_pred ccC-CcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCC
Q 043870 250 VDE-SRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA 328 (526)
Q Consensus 250 ~~~-~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~ 328 (526)
... ..+..++ +..+++|+|..|.+||...... + . ..+.++++|+|+|+++.|..+.+. .+..
T Consensus 125 ~~~~~~~~~~~-~~~~~~g~v~~~~e~~~~~~~~-------------~-~-~~~~~~~~giy~~~~~~l~~~~~~-~~~~ 187 (234)
T 2y6p_A 125 KEAYERPEDVK-VVLDREGYALYFSRSPIPYFRK-------------N-D-TFYPLKHVGIYGFRKETLMEFGAM-PPSK 187 (234)
T ss_dssp SGGGGCTTSCE-EEECTTSBEEEEESSCCSCCSS-------------C-C-SSCCEEEEEEEEEEHHHHHHHHHS-CCCH
T ss_pred HHHhcCCCceE-EEEcCCCCEeeeecCCCCcccc-------------c-c-cceeeEEEEEEEcCHHHHHHHHhC-CCCc
Confidence 111 1122344 3457789999999987531000 0 0 013578999999999998766542 1211
Q ss_pred CChhhc--hHhhhhcCCcEEEEEecceeeecCChhhHHHhchhh
Q 043870 329 NDFGSE--VIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 329 ~d~~~d--il~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~l 370 (526)
.+..+. .++.+.++.++.++..+++|.||||++||..|+..+
T Consensus 188 ~~~~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~ 231 (234)
T 2y6p_A 188 LEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKL 231 (234)
T ss_dssp HHHHHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHC
T ss_pred cchhhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHH
Confidence 111111 223344578999999999999999999999998765
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-22 Score=194.04 Aligned_cols=227 Identities=15% Similarity=0.238 Sum_probs=157.8
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCC-cEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGI-KKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi-~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
++.|||||||.|+|| | ||+|+|++|+ |||+|+++.+.++|+ ++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~~aiIlA~G~~~R~-~-----~K~l~~i~g~-pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~-~--------~ 63 (245)
T 1h7e_A 2 KAVIVIPARYGSSRL-P-----GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQA-F--------G 63 (245)
T ss_dssp CEEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHH-T--------T
T ss_pred CeEEEEEcCCcCCCC-C-----CCcccccCCc-hHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHH-c--------C
Confidence 489999999999999 5 9999999999 999999999999996 999999986 566666653 2 1
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ec-ccCHHHHHHHHHHc-CCcEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LY-RMDYMDFVQHHINS-GGDISVCC 247 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~-~~dl~~ll~~h~~~-~ad~ti~~ 247 (526)
+.++...+. +..|+++++ .+...++ .+.+++++||+ +. ..++.++++.|.+. ++++++++
T Consensus 64 ---~~~~~~~~~-------~~~g~~~~~-~~~~~~~------~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~ 126 (245)
T 1h7e_A 64 ---GKAIMTRND-------HESGTDRLV-EVMHKVE------ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLC 126 (245)
T ss_dssp ---CEEEECCSC-------CSSHHHHHH-HHHHHSC------CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred ---CeEEeCCCc-------cCCcHHHHH-HHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEe
Confidence 334332111 235675544 4443333 37899999999 43 44589999999887 78888877
Q ss_pred EEccCCcCCCceE--EEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhC
Q 043870 248 LPVDESRASDFGL--MKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHY 325 (526)
Q Consensus 248 ~~~~~~~~~~~g~--v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~ 325 (526)
.+.+.....+++. +..+++|++..|.+++...... + ...+.+.++|+|+|+++.|..++ . .
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~r~-------------~--~~~~~~~~~g~y~~~~~~l~~~~-~-~ 189 (245)
T 1h7e_A 127 HAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRN-------------A--EKARYLKHVGIYAYRRDVLQNYS-Q-L 189 (245)
T ss_dssp EEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTT-------------G--GGCCEEEEEEEEEEEHHHHHHGG-G-S
T ss_pred ecCCHHHhcCCCCcEEEECCCCcEEEeecCCCCCCcc-------------c--ccCceeEEEEEEEcCHHHHHHHH-h-C
Confidence 7762111011222 2336789999999875431100 0 00235779999999999886655 2 1
Q ss_pred CCCCCh-hhchHhhh---hcCCcEEEEEecceeeecCChhhHHHhchhhc
Q 043870 326 PEANDF-GSEVIPMA---TKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 326 ~~~~d~-~~dil~~l---i~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll 371 (526)
+ ...+ ..+.++.+ ..+.++.++..+++|.|||||+||..|+..+.
T Consensus 190 ~-~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~ 238 (245)
T 1h7e_A 190 P-ESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMA 238 (245)
T ss_dssp C-CCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHH
T ss_pred C-CCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 2 2222 23444443 24779999999999999999999999987664
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=197.51 Aligned_cols=214 Identities=15% Similarity=0.220 Sum_probs=136.2
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+++|.|||||||.|+||+|+ ||+|+|++|+ |||+|+++++.++ +++|+|++ +..+++.+++.+.++.
T Consensus 16 m~~~~~iIlA~G~g~R~~~~----~K~l~~i~g~-pli~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~~~~~------ 82 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV----PKPLVRVGGC-EIILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLKDKGF------ 82 (232)
T ss_dssp CCCEEEEEEECC------CC----CGGGCEETTE-EHHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHTTSCC------
T ss_pred cccceEEEECCcCcCcCCCC----CcEEeEECCE-EHHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHHhcCC------
Confidence 55689999999999999986 9999999999 9999999999999 99999999 7777777876443311
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCH-HHHHHHHHHcCCcEEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDY-MDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl-~~ll~~h~~~~ad~ti~~~ 248 (526)
.+.++.... +..|++++++.++..++ +++++++||+.++.++ ..+++. . . +++..
T Consensus 83 ---~~~~v~~~~--------~~~g~~~~i~~a~~~~~-------~~~lv~~~D~p~~~~~~~~l~~~----~-~-~~~~~ 138 (232)
T 2xme_A 83 ---NYKIVRHDR--------PEKGNGYSLLVAKNHVE-------DRFILTMGDHVYSQQFIEKAVRG----E-G-VIADR 138 (232)
T ss_dssp ---CEEEEECSC--------GGGCHHHHHHTTGGGCC-------SSEEEEETTEEECHHHHHHHTTC----C-E-EEEES
T ss_pred ---cEEEEECCC--------CCCCcHHHHHHHHHHCC-------CCEEEEcCCcccCHHHHHHHHhC----C-C-cEEEc
Confidence 145544322 22689999998876553 5799999999875553 444431 1 1 22111
Q ss_pred EccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCC
Q 043870 249 PVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA 328 (526)
Q Consensus 249 ~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~ 328 (526)
........+++.+..+ +|++..|.+++. ..+.+++|+|+|++++|. .++....+
T Consensus 139 ~~~~~~~~~~~~v~~~-~g~v~~~~~~~~-----------------------~~~~~~~g~~~~~~~~~~-~l~~~~~~- 192 (232)
T 2xme_A 139 EPRFVDIGEATKIRVE-DGRVAKIGKDLR-----------------------EFDCVDTGFFVLDDSIFE-HAEKLRDR- 192 (232)
T ss_dssp SCSSSCTTTSCEEEEE-TTEEEEEETTCS-----------------------SCSEEEEEEEEECTTHHH-HHGGGTTS-
T ss_pred cccccCCCcceEEEEc-CCEEEEeecCCC-----------------------CcceEEEEEEEECHHHHH-HHHHHHhc-
Confidence 1111123456777665 789999998764 235678999999999986 55543221
Q ss_pred CChhhchHhhhhcCCcEEEEEec-ceeeecCChhhHHHhchh
Q 043870 329 NDFGSEVIPMATKDFNVQAYLFN-DYWEDIGTIKSFFDANLS 369 (526)
Q Consensus 329 ~d~~~dil~~li~~~~V~~~~~~-~~w~dIgt~~d~~~An~~ 369 (526)
.++ -++.+++...+.++.++ ++|.|||||+||.+|+..
T Consensus 193 g~~---~l~~ll~~~~v~~~~~~~~~~~dI~tpeDl~~a~~~ 231 (232)
T 2xme_A 193 EEI---PLSEIVKLARLPVTYVDGELWMDVDTKEDVRRANRA 231 (232)
T ss_dssp SCC---CHHHHHHHHTCBEEECCSCCEEEEECC---------
T ss_pred Chh---HHHHHHHcCCEEEEEECCCCEEeCCCHHHHHHHHhh
Confidence 111 13344444456666665 689999999999998764
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-21 Score=190.41 Aligned_cols=237 Identities=14% Similarity=0.163 Sum_probs=164.5
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHH-HHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPM-SNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l-~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
+.|||||+|.|+||. +|+|+|++|+ |||+|++ +.+.++++++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~aiIlA~G~stR~~------~K~L~~i~Gk-Pli~~~i~~~~~~~~~~~vvVvt~~--~~i~~~~~~-~--------g- 62 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP------GKPLLLIHDR-PMILRVVDQAKKVEGFDDLCVATDD--ERIAEICRA-E--------G- 62 (253)
T ss_dssp EEEEEECCSCCTTST------TGGGSEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHT-T--------T-
T ss_pred eEEEEEeCCCCCCCC------CCceeeECCe-EhHHHHHHHHHHhcCCCEEEEECCH--HHHHHHHHH-c--------C-
Confidence 579999999999997 5999999999 9999999 99999999999999974 566666642 2 1
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHc-CCcEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINS-GGDISVCCL 248 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~-~ad~ti~~~ 248 (526)
+.++...+. +..|+ +++..++..+.. ...+.++++.||. +... .+.++++.|.+. ++++..++.
T Consensus 63 --~~v~~~~~~-------~~~Gt-~~i~~a~~~~~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~ 129 (253)
T 4fcu_A 63 --VDVVLTSAD-------HPSGT-DRLSEVARIKGW---DADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCE 129 (253)
T ss_dssp --CCEEECCTT-------CCCHH-HHHHHHHHHHTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEE
T ss_pred --CeEEEeCCC-------CCChH-HHHHHHHHhcCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeE
Confidence 222222111 22466 578888777741 1347899999999 5554 589999999876 344544455
Q ss_pred EccC----CcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhh
Q 043870 249 PVDE----SRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWH 324 (526)
Q Consensus 249 ~~~~----~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~ 324 (526)
+..+ .++..+ .+..|++|+++.|.++|..........+ +......++.++|+|.|++++|..+...
T Consensus 130 ~~~~~~~~~~p~~~-kvv~d~~g~~l~fsr~~ip~~r~~~~~~--------~~~~~~~~~~~~GiY~f~~~~l~~~~~~- 199 (253)
T 4fcu_A 130 PIHALDEFQRDSIV-KVVMSKQNEALYFSRATIPYDRDGAKRD--------EPTLHTQAFRHLGLYAYRVSLLQEYVTW- 199 (253)
T ss_dssp ECCCHHHHHCTTSC-EEEECTTSBEEEEESSCCSCCTTTSSSS--------SCCCCSCCEEEEEEEEEEHHHHHHHTTS-
T ss_pred EcCCHHHccCCCcc-EEEECCCCeEEEecCCCCCCCCCccccc--------ccccccceeEEEEEEEeCHHHHHHHHhC-
Confidence 5422 223344 4567889999999998865321110000 0000135788999999999999877532
Q ss_pred CCCCCChh-h---chHhhhhcCCcEEEEEecce-eeecCChhhHHHhchhhcCC
Q 043870 325 YPEANDFG-S---EVIPMATKDFNVQAYLFNDY-WEDIGTIKSFFDANLSLTDK 373 (526)
Q Consensus 325 ~~~~~d~~-~---dil~~li~~~~V~~~~~~~~-w~dIgt~~d~~~An~~ll~~ 373 (526)
+ ...+. . +.++.+-.+++|+++..+++ |.+||||+||.+|+..+.++
T Consensus 200 -~-~~~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r 251 (253)
T 4fcu_A 200 -E-MGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES 251 (253)
T ss_dssp -C-CCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred -C-CCcccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 1 12232 2 23343445889999999999 99999999999999877553
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-21 Score=189.58 Aligned_cols=244 Identities=16% Similarity=0.204 Sum_probs=162.6
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
++.|||||||.|+||. +|+|+|++|+ |||+|+++++.++++++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~~~gk-pli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~-~--------~- 62 (262)
T 1vic_A 2 SFTVIIPARFASSRLP------GKPLADIKGK-PMIQHVFEKALQSGASRVIIATDN--ENVADVAKS-F--------G- 62 (262)
T ss_dssp CCEEEEECCCCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHH-T--------T-
T ss_pred CcEEEEEcCCCCCCCC------CCccccCCCe-EHHHHHHHHHHhCCCceEEEECCc--HHHHHHHHh-c--------C-
Confidence 4789999999999996 4999999999 999999999999999999999985 456666642 2 1
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ec-ccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LY-RMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~-~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
+.++...+ .+..|++ .+..+...+.. ...+.+++++||+ +. ..++.++++.|.+.++++++++.+
T Consensus 63 --~~~~~~~~-------~~~~g~~-~~~~~~~~l~~---~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~ 129 (262)
T 1vic_A 63 --AEVCMTSV-------NHNSGTE-RLAEVVEKLAI---PDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVK 129 (262)
T ss_dssp --CEEEECCC-------SSCCHHH-HHHHHHHHTTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred --CEEEECCc-------cccCChH-HHHHHHHHhcc---CCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 33332211 1224665 45555555531 1347899999999 44 456899999998888888888887
Q ss_pred ccCCc---CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcC-CCceeeeeEEEEcHHHHHHHHHhhC
Q 043870 250 VDESR---ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARN-FPYIASMGIYLFKTEVLLKVLRWHY 325 (526)
Q Consensus 250 ~~~~~---~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~-~~~l~~~Giyif~~~~l~~ll~~~~ 325 (526)
..+.. ...+..+..+++|++..|.+++......... ... .....+. ..+..++|+|+|++++|..+... .
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~~~---~~~--~~~~~~~p~~~~~~~giy~~~~~~l~~~~~~-~ 203 (262)
T 1vic_A 130 IHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFM---NLQ--DVQKVQLSDAYLRHIGIYAYRAGFIKQYVQW-A 203 (262)
T ss_dssp CCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHT---TCS--CGGGCCCCTTCEEEEEEEEEEHHHHHHHHHS-C
T ss_pred cCCHHHhcCCCceEEEECCCCCEeeeecCCCCcCCcccc---ccc--cccccccccceEEEEEEEEeeHHHHHHHHhC-C
Confidence 76520 1234455557889999998876421100000 000 0000000 23689999999999988765432 1
Q ss_pred CCCCChhhchHh--hhh-cCCcEEEEEec-ceeeecCChhhHHHhchhhcCCC
Q 043870 326 PEANDFGSEVIP--MAT-KDFNVQAYLFN-DYWEDIGTIKSFFDANLSLTDKP 374 (526)
Q Consensus 326 ~~~~d~~~dil~--~li-~~~~V~~~~~~-~~w~dIgt~~d~~~An~~ll~~~ 374 (526)
+...+. .++++ .++ .+.++.++..+ ++|.|||||+||..|+..+....
T Consensus 204 ~~~~~~-~e~~~~~~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~~~ 255 (262)
T 1vic_A 204 PTQLEN-LEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAANG 255 (262)
T ss_dssp CCHHHH-HHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHTC
T ss_pred CCchhh-hhhHHHHHHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 111111 12222 233 47799999998 79999999999999998876543
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-21 Score=204.16 Aligned_cols=258 Identities=14% Similarity=0.145 Sum_probs=147.1
Q ss_pred EEEEcCCeeccc--CHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEEcC--CCCeeeeeccCCcccccccccccccc
Q 043870 216 ILILSGDHLYRM--DYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDE--TGRIRQFLEKPKGENLRSMQIDTTAL 291 (526)
Q Consensus 216 ~lil~gD~l~~~--dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d~--~g~V~~~~eKp~~~~~~~~~~~~~~l 291 (526)
=|+--+|++|++ +|.++++.|. + ++.. .+++..||+..+++ +++| .|.|||+...
T Consensus 13 ~~~~~~dhiy~m~~~l~~i~~~h~---~--tl~g----~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~----------- 71 (374)
T 2iu8_A 13 GLVPRGSHMSQSTYSLEQLADFLK---V--EFQG----NGATLLSGVEEIEEAKTAHI-TFLDNEKYAK----------- 71 (374)
T ss_dssp --------CCSCCEEHHHHHHHTT---C--EEES----CTTCEECEECCTTTCCTTEE-EECCSSSTHH-----------
T ss_pred CcccCccccccCcCcHHHHHHhhC---C--EEEC----CCcceEEEEeccccCCCCeE-EEEeCchhhh-----------
Confidence 477789999998 8999999885 2 5543 33456788888874 4677 9999998531
Q ss_pred ccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCChhhchHhhhhcCCcEEEEEecceeeec--CChhhHHHhchh
Q 043870 292 GLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDI--GTIKSFFDANLS 369 (526)
Q Consensus 292 ~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d~~~dil~~li~~~~V~~~~~~~~w~dI--gt~~d~~~An~~ 369 (526)
...+.++|+|+|+++++..+. +| .+++| ++.+...++|.+..+|+|. .++.
T Consensus 72 ---------~~~~~~aGiyI~~~~~l~~~~--------~~-~~~~p-l~~~~~~~a~~~~~~~~~~~i~~~~-------- 124 (374)
T 2iu8_A 72 ---------HLKSSEAGAIIISRTQFQKYR--------DL-NKNFL-ITSESPSLVFQKCLELFITPVDSGF-------- 124 (374)
T ss_dssp ---------HHHTCCCSEEEEEHHHHHTST--------TS-CSCEE-EESSCHHHHHHHHHTTTSCCCCCSC--------
T ss_pred ---------hhhcCCcEEEEeChhHhhhcc--------cc-ccceE-EEeCCHHHHHHHHHHHhcccccccc--------
Confidence 124679999999998774221 13 45667 6665555555555566654 2221
Q ss_pred hcCCCCCcccCCCCCcccCCCCCCCCeeec-CeeE------e-------eeEECCCCEEc-ceee-eceEECCCcEECCC
Q 043870 370 LTDKPPKFHFYDPQKPIFTSPRFLPPSKIE-KCRV------Q-------DSIISHGCFLR-ECSV-EHSIVGIRSRLEYG 433 (526)
Q Consensus 370 ll~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i------~-------~s~Ig~~~~i~-~~~v-~~s~ig~~~~I~~~ 433 (526)
...++..++++.+.+...+.++|++.|. +++| . ++.||++|.|+ .+.| .+++||++|.|+++
T Consensus 125 --~~i~~~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~ 202 (374)
T 2iu8_A 125 --PGIHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPG 202 (374)
T ss_dssp --CSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEECTT
T ss_pred --CccCCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEECCC
Confidence 1112234555666666555555555552 3222 1 13333333333 2333 34445555555555
Q ss_pred CEEece--------------------EEECCcccchhHHHHHHhhCC-CcceEECCCCEEec-eEECCCCEECCCcEEcc
Q 043870 434 VELKDT--------------------MMMGADYYQTEAEIAALLAEG-KVPVGIGRDTKIKN-CIIDKNAKIGKNVIIAN 491 (526)
Q Consensus 434 ~~i~~~--------------------v~~~~~~~~~~~~~~~~~~~~-~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~ 491 (526)
+.|... +++|++. +-+. .+.+..| ..++.||++++|.+ ++|++||+||++++|.+
T Consensus 203 ~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v-~IG~--~~~I~~~~~~~t~ig~~~~i~~~v~I~~~v~IG~~~~i~~ 279 (374)
T 2iu8_A 203 AVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDV-EIGA--NTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIVA 279 (374)
T ss_dssp CEEEEECSCEEEETTTEEEECCCCCCEEECTTC-EECT--TCEEEECSSSCEEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred CEECcCCcccccccCCceeEeeeeccEEECCCC-EECC--CcEEccCcccceeECCCcEECCccccCCccEECCCCEEcc
Confidence 555322 4444330 0000 0000000 01133344444443 67889999999999999
Q ss_pred CCCcCCccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 492 KDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 492 ~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
...+..+.++|++++|+.++. .||++|+|+++++|
T Consensus 280 ~~~v~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V 319 (374)
T 2iu8_A 280 QAGIAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGV 319 (374)
T ss_dssp TCEECTTCEECSSCEECTTCEECSSCEECTTEEECTTCEE
T ss_pred CcccCCCcEECCCeEEecCcEECCCcccCCCcEEccCcee
Confidence 999999999999999998764 67888888888764
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-20 Score=179.21 Aligned_cols=230 Identities=13% Similarity=0.103 Sum_probs=153.1
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+++.|||||||.|+||++ ..+||+|+|++|+ |||+|+++++.+++ +++|+|++++......+.+.+.|.+.
T Consensus 2 ~~~~aIIlAaG~g~Rm~~--~~~pK~l~~l~Gk-pll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~----- 73 (246)
T 3f1c_A 2 SLIYAQILAGGKGTRMGN--VSMPKQFLPLNGK-PIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISD----- 73 (246)
T ss_dssp CCEEEEEECC-----C-C--SSCCGGGSEETTE-EHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCC-----
T ss_pred CccEEEEECCccccccCC--CCCCCeEEEECCe-eHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCC-----
Confidence 457999999999999996 4689999999999 99999999999997 99999999977654333333333211
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhcc-CCCCeEEEEcCCe-ec-ccCHHHHHHHHHHcCCcEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKH-RNIENILILSGDH-LY-RMDYMDFVQHHINSGGDISVC 246 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~-~~~e~~lil~gD~-l~-~~dl~~ll~~h~~~~ad~ti~ 246 (526)
..+.++.. + .+..++++.++..+.+... ...+.+++++||. +. ...+.++++.|.+.++ .+.
T Consensus 74 --~~~~~~~~-~----------~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a--~i~ 138 (246)
T 3f1c_A 74 --DRIVVIEG-G----------EDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGA--VDT 138 (246)
T ss_dssp --TTEEEEEC-C----------SSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSE--EEE
T ss_pred --CCEEEECC-C----------CchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCC--EEE
Confidence 11444321 1 3678899999988863100 1247899999998 44 4458999999988765 344
Q ss_pred EEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC
Q 043870 247 CLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP 326 (526)
Q Consensus 247 ~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~ 326 (526)
+.++.+ .++..++++.+..+.+|+.-. ..-..++|+.+.|...++....
T Consensus 139 ~~~~~d------~i~~~~~~~~v~~~~~r~~l~-------------------------~~qtpq~f~~~~L~~a~~~~~~ 187 (246)
T 3f1c_A 139 VIEALD------TIVESSNHEVITDIPVRDHMY-------------------------QGQTPQSFNMKKVFNHYQNLTP 187 (246)
T ss_dssp EEECSS------CEEECSSSSBCCBCCCGGGEE-------------------------EEEEEEEEEHHHHHHHHHTSCH
T ss_pred EEeccc------eEEEecCCCeEEEecChHHhh-------------------------hhcCCceeEHHHHHHHHHHHHH
Confidence 555543 344445566777776665421 1113469999988777765311
Q ss_pred CCCChhhchHhhhhc-CCcEEEEEecceeeecCChhhHHHhchhhcCCC
Q 043870 327 EANDFGSEVIPMATK-DFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKP 374 (526)
Q Consensus 327 ~~~d~~~dil~~li~-~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~ 374 (526)
....+..|.+..+.. +.+|..+..+.+|++|+||+||..|+..+..+.
T Consensus 188 ~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~ 236 (246)
T 3f1c_A 188 EKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERI 236 (246)
T ss_dssp HHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC
T ss_pred cCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhccc
Confidence 111122344444333 678999999999999999999999998876543
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.1e-20 Score=178.11 Aligned_cols=223 Identities=11% Similarity=0.066 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccCh-hHHHHHhhhcccCCCCcccC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNS-QSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~-~~l~~~l~~~~~~~~~~~~~ 170 (526)
|.|||||||.|+||++ ..+||+|+|++|+ |||+|+++++.++ ++++|+|++++.. +.+.+++. .++ ..+.
T Consensus 3 ~~~iIlA~G~g~R~~~--~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~-~~~----~~~~ 74 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGI--SNLPKQFLELGDR-PILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVD-KYL----PLYK 74 (236)
T ss_dssp EEEEEEEC-------------CGGGSEETTE-EHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHH-HHC----GGGG
T ss_pred eEEEEeCCccccccCC--CCCCCeeeeeCCc-cHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHH-hcc----cccc
Confidence 7899999999999997 6789999999999 9999999999998 5999999999887 44555543 332 0110
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccC--CCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHR--NIENILILSGDH-LYRM-DYMDFVQHHINSGGDISVC 246 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~--~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti~ 246 (526)
..+.+.. .. .|+.++++.++..+... .. ..+.+++++||+ ++.. ++.++++.|.+.++ .++
T Consensus 75 -~~~~~~~--~~---------~~~~~~i~~~l~~~~~~-~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~ 139 (236)
T 2vsh_A 75 -ERIIITK--GG---------ADRNTSIKNIIEAIDAY-RPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDT 139 (236)
T ss_dssp -GGEEEEE--CC---------SSHHHHHHHHHHHHHHH-SCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEE
T ss_pred -CceEEEC--CC---------CchHHHHHHHHHHHHhh-ccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEE
Confidence 0122211 00 47889999998877420 01 126789999999 5544 68999999887654 344
Q ss_pred EEEccCCcCCCceEEEEcCCC-CeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhC
Q 043870 247 CLPVDESRASDFGLMKIDETG-RIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHY 325 (526)
Q Consensus 247 ~~~~~~~~~~~~g~v~~d~~g-~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~ 325 (526)
+.+..+ + +..+++| ++..+.+++.. ......|+|+++.|..+++...
T Consensus 140 ~~~~~~--~-----~~~~~~g~~~~~~~~~~~~-------------------------~~~~~p~~f~~~~l~~~~~~~~ 187 (236)
T 2vsh_A 140 VVEAVD--T-----IVESTNGQFITDIPNRAHL-------------------------YQGQTPQTFRCKDFMDLYGSLS 187 (236)
T ss_dssp EEECCS--C-----EEECSSSSBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTCC
T ss_pred EEeccc--c-----EEEeCCCCeeeeecChHHh-------------------------eeecCCcEecHHHHHHHHHHHH
Confidence 555533 1 2334677 88878776431 1112378999998876665421
Q ss_pred CCCCCh-hhchHhhhhc-CCcEEEEEecceeeecCChhhHHHhchhhc
Q 043870 326 PEANDF-GSEVIPMATK-DFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 326 ~~~~d~-~~dil~~li~-~~~V~~~~~~~~w~dIgt~~d~~~An~~ll 371 (526)
.. ..+ ..+.+..+.. +.++..+..+++|.||+||+||..|+..+.
T Consensus 188 ~~-g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~~ 234 (236)
T 2vsh_A 188 DE-EKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIE 234 (236)
T ss_dssp HH-HHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHTC
T ss_pred hc-CCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHhh
Confidence 10 001 1222233222 568888888889999999999999987653
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=173.81 Aligned_cols=217 Identities=15% Similarity=0.120 Sum_probs=147.5
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
++.|||||||.|+||+ ||+|+|++|+ |||+|+++++.+++ +++|+|++++ +.+.+++.+ + +
T Consensus 4 ~~~aiIlA~G~g~R~~------~K~l~~i~gk-pll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~~-~--------~ 65 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAKN-F--------G 65 (228)
T ss_dssp EEEEEEECCSSCSSST------TTTTCEETTE-EHHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHHH-T--------T
T ss_pred ceEEEEecCCCCCCCC------CcccceeCCc-CHHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHHH-c--------C
Confidence 4779999999999998 8999999999 99999999999998 7999999974 445555532 2 1
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecc-cCHHHHHHHHHHcCCcEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYR-MDYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~-~dl~~ll~~h~~~~ad~ti~~~ 248 (526)
+.++.....- ..+..|+.++++.++..+. ...+.+++++||+ +.. .++.++++.|.+.++++++.+.
T Consensus 66 ---~~~~~~~~~~----~~~~~g~~~sv~~~l~~~~----~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~ 134 (228)
T 1ezi_A 66 ---VEVVLRPAEL----ASDTASSISGVIHALETIG----SNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSAC 134 (228)
T ss_dssp ---CEEEECCC----------CHHHHHHHHHHHHHT----CCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEE
T ss_pred ---CEEEeCchHH----cCCCCChHHHHHHHHHHhC----CCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEE
Confidence 2222111100 0012578999999998874 1347899999999 444 4688999888777777888877
Q ss_pred EccCCcCCCceEEEEcCCCCeeeeeccCCc-cccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 249 PVDESRASDFGLMKIDETGRIRQFLEKPKG-ENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 249 ~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~-~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
+..+. + ++....|++|++..|.++... .. .+. ....+..++|+|++++..|...+
T Consensus 135 ~~~~~-p--~~~~~~~~~g~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~giy~~~~~~l~~~~------ 190 (228)
T 1ezi_A 135 PMEHH-P--LKTLLQINNGEYAPMRHLSDLEQP--------------RQQ-LPQAFRPNGAIYINDTASLIANN------ 190 (228)
T ss_dssp ECSSC-T--TSCEEECC--CEEESSCHHHHTCC--------------GGG-SCCEEEEEEEEEEEEHHHHHHHT------
T ss_pred ecCCC-c--ceeeEEcCCCcEeeccccccccCC--------------ccc-CchhheeeeEEEEEeHHHHhhCC------
Confidence 76542 2 333334778899988762210 00 000 00234567899999998775421
Q ss_pred CCChhhchHhhhhcCCcEEEEEec-ceeeecCChhhHHHhchhhcC
Q 043870 328 ANDFGSEVIPMATKDFNVQAYLFN-DYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 328 ~~d~~~dil~~li~~~~V~~~~~~-~~w~dIgt~~d~~~An~~ll~ 372 (526)
.+ .+.++.++..+ .+|.||+||+||..|+..+..
T Consensus 191 --~~---------~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~~ 225 (228)
T 1ezi_A 191 --CF---------FIAPTKLYIMSHQDSIDIDTELDLQQAENILNH 225 (228)
T ss_dssp --SS---------CCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC-
T ss_pred --cc---------cCCceEEEEeCcccccCCCCHHHHHHHHHHHHh
Confidence 00 14667777776 589999999999999876643
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=171.20 Aligned_cols=214 Identities=18% Similarity=0.127 Sum_probs=149.0
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhH-HHHHhhhcccCCCCccc
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQS-LNRHISRTYNLGDGMNF 169 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~-l~~~l~~~~~~~~~~~~ 169 (526)
+|.|||||||.|+||+ ...||+|+|++|+ |||+|+++++.+++ +++|+|++++.... +.+++. .
T Consensus 2 ~~~~vIlA~G~g~R~~---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~-~--------- 67 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLR---AGRPKAFVTLGGT-PLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFG-G--------- 67 (223)
T ss_dssp CEEEEEECCCCCGGGT---SSSCGGGSEETTE-EHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTC-B---------
T ss_pred ceEEEEECCccCcccC---CCCCCeeeEECCe-EHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhc-c---------
Confidence 4899999999999998 4689999999999 99999999999998 99999999987643 333331 0
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti~~ 247 (526)
. .+.++.. . .+.+++++.++..++ ..+.+++++||+ +... ++.++++.|. .+.+.++.+
T Consensus 68 -~-~v~~~~~--~---------~~~~~~i~~al~~~~-----~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~ 128 (223)
T 2xwl_A 68 -E-DSVIVSG--G---------VDRTESVALALEAAG-----DAEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPG 128 (223)
T ss_dssp -T-TEEEEEC--C---------SSHHHHHHHHHTTCT-----TCSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEE
T ss_pred -C-CeEEEcC--C---------CCHHHHHHHHHHhcC-----CCCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEE
Confidence 0 1444321 1 357888998876662 236789999999 5554 5899998883 344667766
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
.+..+ + ..+ .|++|++..+.|++.. ......|+|+++.+..+++...
T Consensus 129 ~~~~d--~--~~~--~~~~g~~~~~~e~~~l-------------------------~~~~~p~~f~~~~l~~~~~~~~-- 175 (223)
T 2xwl_A 129 LAPAD--T--IKA--VDANGAVLGTPERAGL-------------------------RAVQTPQGFHADVLRRAYARAT-- 175 (223)
T ss_dssp ECCSS--C--EEE--ECTTSBEEECCCGGGE-------------------------EEECSCEEEEHHHHHHHHTTCC--
T ss_pred Eeccc--c--eEE--EcCCCcEEeecChHHh-------------------------eeeeCCcccCHHHHHHHHHHhh--
Confidence 66543 2 122 3678899888876531 0112358899888776654321
Q ss_pred CCChhhchHhhhhc-CCcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 328 ANDFGSEVIPMATK-DFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 328 ~~d~~~dil~~li~-~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
.++..+....+.. +.++..+..+++|.|||||+||..|+..+..
T Consensus 176 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~ 220 (223)
T 2xwl_A 176 -AGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAH 220 (223)
T ss_dssp -SCCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHH
T ss_pred -CCCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhh
Confidence 1222233333222 4678888888899999999999999877644
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=172.63 Aligned_cols=220 Identities=15% Similarity=0.133 Sum_probs=141.5
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+++.|||||||.|+||+ ...||+|+|++|+ |||+|+++++.++ ++++|+|++++..+.+.+++...+
T Consensus 3 ~~~~aiIlAaG~g~R~~---~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~-------- 70 (228)
T 2yc3_A 3 KSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESI-------- 70 (228)
T ss_dssp TCEEEEEECCCCC----------CGGGSEETTE-EHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTTTS--------
T ss_pred cceEEEEECCccccccC---CCCCccEeEECCE-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHHhC--------
Confidence 35899999999999998 4579999999999 9999999999998 899999999998776666664332
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti~~ 247 (526)
+. .+.++. .. .|..++++.++..+++ ..+.++++.||. ++.. ++.++++.|.+.++ ++++
T Consensus 71 ~~-~v~~~~--~~---------~~~~~sv~~al~~~~~----~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~--~i~~ 132 (228)
T 2yc3_A 71 DV-DLSFAI--PG---------KERQDSVYSGLQEIDV----NSELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLG 132 (228)
T ss_dssp SS-EEEEEC--CC---------SSHHHHHHHHHTTSCT----TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEE
T ss_pred CC-cEEEEC--CC---------CCHHHHHHHHHHhhcc----CCCEEEEecCCCccCCHHHHHHHHHHHHhcCc--eEEE
Confidence 11 143332 11 4788999999877642 246788999997 5544 58999998877654 4555
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
.+..+ .+..+++++.+..+.+++. .+...+ .|+|+++.|...++.....
T Consensus 133 ~~~~~------~~~~~~~~~~v~~~~~~~~------------------------~~~~~~-~~~f~~~~l~~~~~~~~~~ 181 (228)
T 2yc3_A 133 VPAKA------TIKEVNSDSLVVKTLDRKT------------------------LWEMQT-PQVIKPELLKKGFELVKSE 181 (228)
T ss_dssp EECCS------CCCCBCTTSCBCCCCSCCC------------------------CEEEEE-EEEECHHHHHHHHHHHHHH
T ss_pred Eeccc------eEEEEcCCCceEEecCccc------------------------eEEEeC-CcEEEHHHHHHHHHHHHhc
Confidence 55432 1222344555554432211 122333 8999988776665432111
Q ss_pred CCChhhchHhhhhc-CCcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 328 ANDFGSEVIPMATK-DFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 328 ~~d~~~dil~~li~-~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
. .+..+.+..+.+ +.++..+.....|.||+||+||..|+..+..
T Consensus 182 ~-~~~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~ 226 (228)
T 2yc3_A 182 G-LEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSE 226 (228)
T ss_dssp T-CCCCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHTC
T ss_pred C-CCcccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHhh
Confidence 1 112233333332 5567655556689999999999999876643
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=167.05 Aligned_cols=220 Identities=13% Similarity=0.122 Sum_probs=134.6
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
++|.|||||||.|+||++ ..||+|+|++|+ |||+|+++++.+++ +++|+|++++..+.+.+ +.+ +..
T Consensus 5 ~~~~aiIlA~G~g~R~~~---~~~K~l~~~~gk-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~-~~~------ 72 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGA---DKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQT-AFP------ 72 (231)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHH-HCT------
T ss_pred CceEEEEEcccccccCCC---CCCceEeEECCe-EHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHh-cCC------
Confidence 458999999999999996 579999999999 99999999999985 99999999987766555 432 211
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhc-cCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAK-HRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISVC 246 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~-~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti~ 246 (526)
..+.++. . ..|++++++.++..+.... ....+.+++++||+ +... .+.++++.|.+.+.. .++
T Consensus 73 --~~i~~~~---~--------~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~-~~~ 138 (231)
T 1vgw_A 73 --QVRVWKN---G--------GQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEG-GIL 138 (231)
T ss_dssp --TSEEECC---C--------CSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTC-EEE
T ss_pred --CceEEEc---C--------CCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCe-EEE
Confidence 1143321 1 1589999999988774100 00237899999998 5544 488999888655422 344
Q ss_pred EEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC
Q 043870 247 CLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP 326 (526)
Q Consensus 247 ~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~ 326 (526)
+.+..+. ++.+++|++....++. ........|+|+++.|..+++....
T Consensus 139 ~~~~~~~-------~~~~~~g~i~~~~~~~-------------------------~~~~~~~p~~f~~~~l~~~~~~~~~ 186 (231)
T 1vgw_A 139 AVPVADT-------LKRAESGQISATVDRS-------------------------GLWQAQTPQLFQAGLLHRALAAENL 186 (231)
T ss_dssp EEECCSC-------EEEESSSBEEEEECCT-------------------------TEEEEEEEEEEEHHHHHHHHHC---
T ss_pred Eeecccc-------eEEeCCCceEecCChH-------------------------HheeeeCCcEecHHHHHHHHHHHhh
Confidence 4554321 1112455554332211 1112224899999988776654221
Q ss_pred CCCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhh
Q 043870 327 EANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 327 ~~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~l 370 (526)
........++... +.++..+..++.|.|||||+||..|+..+
T Consensus 187 ~g~~~~~~~~~~~--~~~v~~v~~~~~~~dIdtpeDl~~a~~~l 228 (231)
T 1vgw_A 187 GGITDEASAVEKL--GVRPLLIQGDARNLKLTQPQDAYIVRLLL 228 (231)
T ss_dssp -CCCSHHHHHHTT--TCCCEEEECCTTCCCCCSHHHHHHHHHHC
T ss_pred cCCCcHHHHHHHc--CCCEEEEECCccccCcCCHHHHHHHHHHH
Confidence 1100011223222 46788787778999999999999998755
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-19 Score=175.00 Aligned_cols=200 Identities=15% Similarity=0.170 Sum_probs=138.8
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
+|.+||||||. |||.+.+...||+|+|++|+ |||+|+++++.++++ +|+|++.. +.+.+++
T Consensus 2 ~~~~vIlAaG~-tRl~~r~~~~~K~l~~i~g~-pll~~~l~~l~~~~~-~ivvv~~~--~~i~~~~-------------- 62 (232)
T 2dpw_A 2 RPSAIVLAGGK-EAWAERFGVGSKALVPYRGR-PMVEWVLEALYAAGL-SPVYVGEN--PGLVPAP-------------- 62 (232)
T ss_dssp CCEEEEECCCB-CSGGGTTTCSBGGGSEETTE-ETHHHHHHHHHHTTC-EEEEESCC--SSCSSCC--------------
T ss_pred ceeEEEECCCC-CccccccCCCCceeeEECCE-EHHHHHHHHHHhcCC-EEEEEeCh--HHHhhhc--------------
Confidence 47999999999 77776665689999999999 999999999999998 88887543 2221111
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
+ +.+ . . ..|++++++.++..++ +.+++++||+ +...++.++++ | ..++++++.+.+
T Consensus 63 ~-~~~---~-~--------~~g~~~~i~~a~~~~~-------~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~ 120 (232)
T 2dpw_A 63 A-LTL---P-D--------RGGLLENLEQALEHVE-------GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVP 120 (232)
T ss_dssp S-EEE---C-C--------CSSHHHHHHHHHHTCC-------SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEE
T ss_pred C-eEe---c-C--------CCCHHHHHHHHHHHcC-------CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEee
Confidence 1 333 1 1 2699999999976653 7899999999 44556888888 6 666778877766
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhh-----
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWH----- 324 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~----- 324 (526)
.++.. ..|+.+ .++|..+.||| .+++|+|+|+++++..+.+..
T Consensus 121 ~~~~~-~~~~~~----~~~v~~~~ek~---------------------------~~~~g~~~~~~~~l~~~~~~~~~~~~ 168 (232)
T 2dpw_A 121 KEAVE-ARFPRT----KRTYARLREGT---------------------------FTGGNLLLLDKSLFRKALPLARRVVA 168 (232)
T ss_dssp HHHHH-HHCTTC----CCCCEEETTEE---------------------------EEECSEEEEEHHHHTTTHHHHHHHHH
T ss_pred ccchh-hhCCCc----ceeEEEEecCc---------------------------eeeeeEEEEcHHHHHHHHHHHHHHHH
Confidence 43210 123322 24577777654 268999999999876543311
Q ss_pred CCC-------------------CCChhhchHhhhhc--CCcEEEEEec--ceeeecCChhhHH
Q 043870 325 YPE-------------------ANDFGSEVIPMATK--DFNVQAYLFN--DYWEDIGTIKSFF 364 (526)
Q Consensus 325 ~~~-------------------~~d~~~dil~~li~--~~~V~~~~~~--~~w~dIgt~~d~~ 364 (526)
.+. ......++++.++. +.++..+..+ +.|.|||||+||.
T Consensus 169 ~~~~P~~~~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 169 LRKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp TTTCHHHHHHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred hccCHHHHHHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence 010 11223566655543 4788888884 5799999999984
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-17 Score=174.61 Aligned_cols=351 Identities=13% Similarity=0.113 Sum_probs=204.6
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeC-CcchhHHHHHHHHHhc----CCc-EEEEEec-cChhHHHHHhhhccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIG-GCYRLIDVPMSNCINS----GIK-KIYILTQ-FNSQSLNRHISRTYN 162 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~-g~~pLI~~~l~~l~~~----gi~-~I~Iv~~-~~~~~l~~~l~~~~~ 162 (526)
..++.+||||||.||||+ ...||+|+||. |+ |||+++++++... |.. .++|+++ +..+.+.+++.+...
T Consensus 90 ~~k~avViLAGG~GTRmg---s~~PK~l~~V~~gk-~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~ 165 (488)
T 2i5k_A 90 LSKLAVLKLNGGLGTSMG---CVGPKSVIEVREGN-TFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSA 165 (488)
T ss_dssp GGGEEEEEECCCBSGGGT---CCSBSTTSCCBTTB-CHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCS
T ss_pred cCCceEEEEcCCCcccCC---CCCCccccccCCCC-cHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhccc
Confidence 456889999999999998 67899999999 99 9999999999877 533 3666666 888889999976322
Q ss_pred CCCCccc-CCCeEEEEeccc-----ccC--cCCCccccChHHHHHHHHH--HhhhhccCCCCeEEEEcCCeeccc-CHHH
Q 043870 163 LGDGMNF-GDGFVEVLAATQ-----RQG--ESGKKWFQGTADAVRQFIW--MFEDAKHRNIENILILSGDHLYRM-DYMD 231 (526)
Q Consensus 163 ~~~~~~~-~~~~v~vl~~~~-----~~~--~~~~~~~~Gt~~al~~~~~--~i~~~~~~~~e~~lil~gD~l~~~-dl~~ 231 (526)
|+..+.| ....+..+.... ... ..-...+.||++++..... .++.......++++|++||.+... |+.
T Consensus 166 fg~~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL~~~~d~~- 244 (488)
T 2i5k_A 166 NRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLK- 244 (488)
T ss_dssp SSCEEEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBSSCCCCHH-
T ss_pred cCceEEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcCCCcccHH-
Confidence 3211110 001011111000 000 0011245799999984321 122211145689999999998764 675
Q ss_pred HHHHHHHcCCcEEEEEEEccCCcCCCceEEEEcCCCC--eeeeeccCCccccccccccccccccchhhhcCCCceeeeeE
Q 043870 232 FVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGR--IRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGI 309 (526)
Q Consensus 232 ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d~~g~--V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Gi 309 (526)
++..|.++++++++.+.+..++ ...||.+..+ +|+ |+++.+.+...... . + . .......|+|+
T Consensus 245 ~L~~~~~~~a~~t~~v~~~~~p-~~~yG~Iv~~-dG~~~iVE~~e~~~e~~~~-~--~---------~-~~~~~~~Ntgi 309 (488)
T 2i5k_A 245 ILNHMIETGAEYIMELTDKTRA-DVKGGTLISY-DGQVRLLEVAQVPKEHIDE-F--K---------N-IRKFTNFNTNN 309 (488)
T ss_dssp HHHHHHHSCCSEEEEEEECCGG-GSSSCEEEEE-TTEEEEECGGGSCTTSHHH-H--T---------C-TTTCCEEEEEE
T ss_pred HHHHHHhcCCcEEEEEEEecCC-CCceeEEEEE-CCcEEEEEeccCCHHHHhh-c--c---------c-ccccCEEEEEE
Confidence 6688889999999988876542 1249987764 454 55555555532100 0 0 0 01234679999
Q ss_pred EEEcHHHHHHHHHhhCCCC---------------------CChhhchHhhhhcCCcEEEEEe-cceeeecCChhhHHHhc
Q 043870 310 YLFKTEVLLKVLRWHYPEA---------------------NDFGSEVIPMATKDFNVQAYLF-NDYWEDIGTIKSFFDAN 367 (526)
Q Consensus 310 yif~~~~l~~ll~~~~~~~---------------------~d~~~dil~~li~~~~V~~~~~-~~~w~dIgt~~d~~~An 367 (526)
|+|+.+.|...++...... .-|..++++.+ +. ..++.. ...+..+.+..++..+.
T Consensus 310 ~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~~~~~~~~~qlE~~~~d~~~~~-~~--~~~~~V~R~~F~PvKn~~~ll~~~ 386 (488)
T 2i5k_A 310 LWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHF-DG--AHGVVVPRSRFLPVKTCSDLLLVK 386 (488)
T ss_dssp EEEEHHHHHHHHHTTCCCCCCBCCEECCCC-----CEECCBCCGGGGGGGS-SS--CEEEEECGGGCCBCCSHHHHHHHT
T ss_pred EEEeHHHHHHHHhhccCCCcceecCccccCCCCCCceEEeeehhhhHHhhc-cC--ceEEEecccccccccCCccHHHHH
Confidence 9999999988887521110 01112233222 11 222222 23577888887776665
Q ss_pred hhhcCCCCCcccCCCCCcccCCCCCCCCeeecCe--eEee--eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEEC
Q 043870 368 LSLTDKPPKFHFYDPQKPIFTSPRFLPPSKIEKC--RVQD--SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMG 443 (526)
Q Consensus 368 ~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~--~i~~--s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~ 443 (526)
..+..........++.. +.+.|-+.+.+- ++.+ ..+.....|-+ ..+-+|-..+..|.++++++++++-
T Consensus 387 ~~~~~~~~g~~~~~~~~-----~e~~P~v~~~~~~~~~~~~~~rf~~~p~i~~--~~~l~v~Gdv~fg~~v~l~G~v~i~ 459 (488)
T 2i5k_A 387 SDLFRLEHGSLKLDPSR-----FGPNPLIKLGSHFKKVSGFNARIPHIPKIVE--LDHLTITGNVFLGKDVTLRGTVIIV 459 (488)
T ss_dssp STTEEEETTEEEECTTC-----CSSCCEEEECGGGSSHHHHHHHCSSCCBCTT--EEEEEEESSEEECTTCEEEEEEEEE
T ss_pred HHHHHHhcCcEeecCCc-----CCCCCeEEECCcccchhhHHhhcCCCccccc--cceEEEEeeeEEcCCcEEEEEEEEE
Confidence 54322111111112211 222333333210 1111 11111111211 1356677788899999999999887
Q ss_pred CcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEEC
Q 043870 444 ADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIG 484 (526)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig 484 (526)
+. ...|+.|.+|+.+.|++|..|.+|-
T Consensus 460 a~--------------~~~~~~ip~g~~l~n~~~~~~~~~~ 486 (488)
T 2i5k_A 460 CS--------------DGHKIDIPNGSILENVVVTGNLQIL 486 (488)
T ss_dssp CC--------------TTCCEEECTTCEEEEEEEEEEEEEE
T ss_pred cC--------------CCCeEEeCCCCEEecceeecccccc
Confidence 63 2346899999999999888887763
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=162.03 Aligned_cols=216 Identities=13% Similarity=0.169 Sum_probs=136.9
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
++.|||||||.|+||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++.+ + +
T Consensus 3 ~~~aiIlA~G~s~R~~------~K~l~~i~Gk-pli~~~i~~~~~~~~~~~ivv~~~--~~~i~~~~~~-~--------g 64 (229)
T 1qwj_A 3 HLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAKQ-F--------G 64 (229)
T ss_dssp CEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHH-T--------T
T ss_pred cEEEEEEcCCCCCCCC------CcccceECCE-EHHHHHHHHHHhCCCcCEEEEECC--hHHHHHHHHH-c--------C
Confidence 5789999999999996 5999999999 99999999999998 699999994 4556666642 2 1
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecc-cCHHHHHHHHHHcCCcEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYR-MDYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~-~dl~~ll~~h~~~~ad~ti~~~ 248 (526)
+.++...... ... ..+..++++.++..+. ..+.+++++||. +.. .++.++++.|.+.+++.++.+.
T Consensus 65 ---~~~~~~~~~~---~~~-~~~~~~~v~~al~~~~-----~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~ 132 (229)
T 1qwj_A 65 ---AQVHRRSSET---SKD-SSTSLDAIVEFLNYHN-----EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVV 132 (229)
T ss_dssp ---CEEEECCGGG---SST-TCCHHHHHHHHHTTCT-----TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEE
T ss_pred ---CEEEeChhhh---cCC-CCcHHHHHHHHHHhcC-----CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 3332221100 000 1344588888876652 237899999999 444 4689999999888777666555
Q ss_pred EccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCC
Q 043870 249 PVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA 328 (526)
Q Consensus 249 ~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~ 328 (526)
+..+ +..+++ .| + +..|.+++......+ | ..+. ....+..++|+|+|+++.| +
T Consensus 133 ~~~~--p~~~~v--~~--~-~~~~~~~~~~~~~~~---~------~~~~-~~~~~~~n~giY~~~~~~l---~------- 185 (229)
T 1qwj_A 133 RRHQ--FRWSEI--QK--G-VREVTEPLNLNPAKR---P------RRQD-WDGELYENGSFYFAKRHLI---E------- 185 (229)
T ss_dssp EECC--CEECCC--CS--S-TTCCCCBSSSBTTBC---C------CTTT-SCCEEEEEEEEEEEEHHHH---H-------
T ss_pred eccC--hhHhhc--cc--c-ccccccccccccccc---c------CCCC-CCceEEEeeEEEEEEHHHh---c-------
Confidence 4332 223322 22 2 222332111000000 0 0000 0023578999999999887 1
Q ss_pred CChhhchHhhhhcCCcEEEEEec-ceeeecCChhhHHHhchhhcC
Q 043870 329 NDFGSEVIPMATKDFNVQAYLFN-DYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 329 ~d~~~dil~~li~~~~V~~~~~~-~~w~dIgt~~d~~~An~~ll~ 372 (526)
+.+..+..+..+..+ ++|.||||++||..|+..+..
T Consensus 186 --------~~~~~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~~ 222 (229)
T 1qwj_A 186 --------MGYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (229)
T ss_dssp --------TTCSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred --------cccccCCeEEEEECCcccccCCCCHHHHHHHHHHHHH
Confidence 112234455432554 689999999999999987644
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=99.75 E-value=9.8e-18 Score=157.93 Aligned_cols=187 Identities=13% Similarity=0.182 Sum_probs=126.9
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
+++.+||||||.|+||. .||+|+|++|+ |||+|+++++.++++++|+|++++..+.+.+++.+ + +
T Consensus 4 ~~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~-~--------~ 68 (197)
T 2wee_A 4 TQITGVVLAAGRSNRLG-----TPKQLLPYRDT-TVLGATLDVARQAGFDQLILTLGGAASAVRAAMAL-D--------G 68 (197)
T ss_dssp SEEEEEEEECCCCTTTS-----SCGGGSEETTE-EHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSCC-T--------T
T ss_pred CceEEEEECCCCcccCC-----CCeEcCeeCCc-cHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhcc-C--------C
Confidence 45899999999999995 79999999999 99999999999999999999999887776666542 1 1
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti~~~ 248 (526)
+.++.... +..|++++++.++..+. ...+.+++++||+ +.+. .+.++++. +.++++++...
T Consensus 69 ---~~~~~~~~--------~~~g~~~~i~~al~~~~----~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i~~~~~ 131 (197)
T 2wee_A 69 ---TDVVVVED--------VERGCAASLRVALARVH----PRATGIVLMLGDQPQVAPATLRRIIDV--GPATEIMVCRY 131 (197)
T ss_dssp ---SEEEECC------------CCHHHHHHHHTTSC----TTEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSEEEEEE
T ss_pred ---CEEEECCC--------cccCHHHHHHHHHHHhc----ccCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCEEEEec
Confidence 33433211 23689999999987663 1237899999999 5444 57888876 44444432210
Q ss_pred EccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCC
Q 043870 249 PVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA 328 (526)
Q Consensus 249 ~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~ 328 (526)
+| ++..+ ++|+++.|..+. .. .
T Consensus 132 -----------------~g-------~~~~P------------------------------~~~~~~~l~~l~-~~-~-- 153 (197)
T 2wee_A 132 -----------------AD-------GVGHP------------------------------FWFSRTVFGELA-RL-H-- 153 (197)
T ss_dssp -----------------TT-------EEEEE------------------------------EEEEGGGHHHHH-TC-C--
T ss_pred -----------------CC-------CcCCC------------------------------EEECHHHHHHHH-hC-C--
Confidence 11 11111 377888776554 21 1
Q ss_pred CChhhchHhhhhcC--CcEEEEEe-cceeeecCChhhHHHhchhh
Q 043870 329 NDFGSEVIPMATKD--FNVQAYLF-NDYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 329 ~d~~~dil~~li~~--~~V~~~~~-~~~w~dIgt~~d~~~An~~l 370 (526)
.+. -+..+++. .++..+.. .++|.||+||+||.+++..+
T Consensus 154 ~~~---~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~~~~~ 195 (197)
T 2wee_A 154 GDK---GVWKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRLLESV 195 (197)
T ss_dssp STT---HHHHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHHHTC-
T ss_pred CCh---hHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHh
Confidence 111 22334443 45777776 46899999999999987644
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-17 Score=155.31 Aligned_cols=187 Identities=14% Similarity=0.207 Sum_probs=129.5
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
+++.+||||||.|+||+ .||+|+|++|+ |||+|+++++.++++++|+|++++..+.+.+++.+ + +
T Consensus 4 ~~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~-~--------~ 68 (199)
T 2waw_A 4 SRVTGVVLAAGYSRRLG-----TPKQLLPLGDT-TLLGATLAMARRCPFDQLIVTLGGAADEVLEKVEL-D--------G 68 (199)
T ss_dssp CCEEEEEEESSCCTTTT-----SCGGGCEETTE-EHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSCC-T--------T
T ss_pred CceEEEEECCCCCCCCC-----CCEEeCEeCcc-CHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc-C--------C
Confidence 45899999999999997 69999999999 99999999999999999999999887776666542 1 1
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeec--ccCHHHHHHHHHHcCCcEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLY--RMDYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~--~~dl~~ll~~h~~~~ad~ti~~~ 248 (526)
+.++.... +..|++++++.++..+. ...+.+++++||+.+ ...+.++++. +.++++++...
T Consensus 69 ---~~~~~~~~--------~~~g~~~~i~~al~~~~----~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~ 131 (199)
T 2waw_A 69 ---LDIVLVDD--------AGLGCSSSLKSALTWVD----PTAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY 131 (199)
T ss_dssp ---SEEEECCC--------CCTTCCCHHHHHHHTSC----TTCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE
T ss_pred ---CEEEECCC--------cccCHHHHHHHHHHhhh----ccCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec
Confidence 33333211 23688999999987773 124789999999943 4457888876 44555443221
Q ss_pred EccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCC
Q 043870 249 PVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA 328 (526)
Q Consensus 249 ~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~ 328 (526)
+++ +.. -++|+++.+..+.+ . .
T Consensus 132 -----------------~g~-------~~~------------------------------P~~~~~~~l~~~~~-~-~-- 153 (199)
T 2waw_A 132 -----------------ANG-------IGH------------------------------PFWVSRGVFGDLAE-L-H-- 153 (199)
T ss_dssp -----------------TTE-------EEE------------------------------EEEEEGGGHHHHHT-C-S--
T ss_pred -----------------CCc-------ccC------------------------------CEEEcHHHHHHHHh-c-C--
Confidence 110 000 14778887765542 1 1
Q ss_pred CChhhchHhhhhcC--CcEEEEEe-cceeeecCChhhHHHhchhh
Q 043870 329 NDFGSEVIPMATKD--FNVQAYLF-NDYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 329 ~d~~~dil~~li~~--~~V~~~~~-~~~w~dIgt~~d~~~An~~l 370 (526)
.+.. +..+++. .++..+.. .++|.|||||+||..|+..+
T Consensus 154 ~~~~---~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~ 195 (199)
T 2waw_A 154 GDKG---VWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASV 195 (199)
T ss_dssp STTC---HHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHH
T ss_pred CCHH---HHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHH
Confidence 1111 2233332 46777776 45899999999999998765
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=99.73 E-value=9.8e-17 Score=156.00 Aligned_cols=219 Identities=13% Similarity=0.152 Sum_probs=141.0
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
+++|.|||||||.|+||+ ...||+|+|++|+ |||+|+++++.+++ +++|+|++++..+.+.+ +. .+
T Consensus 5 ~~~~~~iIlA~G~g~R~~---~~~~K~l~~i~g~-pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~-~~------- 71 (236)
T 1i52_A 5 HLDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LP-LA------- 71 (236)
T ss_dssp CCCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SG-GG-------
T ss_pred CCceeEEEECCcCccccC---CCCCcceeeECCE-EHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HH-hc-------
Confidence 456899999999999998 4579999999999 99999999999987 89999999986554433 22 11
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISVC 246 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti~ 246 (526)
+...+.++. .. .|..++++.++..+. ..+.+++++||+ +... .+.++++.+.+.++.. +.
T Consensus 72 -~~~~v~~~~--~~---------~g~~~~i~~al~~~~-----~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~-~~ 133 (236)
T 1i52_A 72 -NHPQITVVD--GG---------DERADSVLAGLKAAG-----DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-IL 133 (236)
T ss_dssp -GCTTEEEEE--CC---------SSHHHHHHHHHHTST-----TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-EE
T ss_pred -CCCCEEEEC--CC---------CCHHHHHHHHHHhcC-----CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-EE
Confidence 111144332 11 478899999887663 137899999999 5555 4788888776554232 43
Q ss_pred EEEccCCcCCCceEEEEcCC-CCeeeeeccCCccccccccccccccccchhhhcCCCceee-eeEEEEcHHHHHHHHHhh
Q 043870 247 CLPVDESRASDFGLMKIDET-GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIAS-MGIYLFKTEVLLKVLRWH 324 (526)
Q Consensus 247 ~~~~~~~~~~~~g~v~~d~~-g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~-~Giyif~~~~l~~ll~~~ 324 (526)
+.+..+ ++...+++ |++....+. ..++. -+.++|+.+.+..+++..
T Consensus 134 ~~~~~~------~~~~~~~~~~~i~~~~~~--------------------------~~i~~~~~p~~f~~~~l~~~~~~~ 181 (236)
T 1i52_A 134 AAPVRD------TMKRAEPGKNAIAHTVDR--------------------------NGLWHALTPQFFPRELLHDCLTRA 181 (236)
T ss_dssp EEECCS------CEEEECTTSSSEEEEECC--------------------------TTCEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEeccc------cEEEEcCCCCceeeccCh--------------------------HhheeeeCCceecHHHHHHHHHHH
Confidence 444322 11122434 454432211 11121 256788887776666542
Q ss_pred CCCCCChh--hchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCC
Q 043870 325 YPEANDFG--SEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDK 373 (526)
Q Consensus 325 ~~~~~d~~--~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~ 373 (526)
......+. ..++... +.++..+..++.|.||+||+||..|+..+..+
T Consensus 182 ~~~g~~~td~~~~~~~~--~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~ 230 (236)
T 1i52_A 182 LNEGATITDEASALEYC--GFHPQLVEGRADNIKVTRPEDLALAEFYLTRT 230 (236)
T ss_dssp HHTTCCCCSHHHHHHHT--TCCCEEEECCTTCCCCCSHHHHHHHHHHHCC-
T ss_pred HhcCCCcccHHHHHHHc--CCCEEEEecCccccccCCHHHHHHHHHHHHHh
Confidence 11111111 1223221 46777787778899999999999999877543
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=156.51 Aligned_cols=130 Identities=23% Similarity=0.306 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|+|||||||.|+||+| .||+|+|++|+ |||+|+++++.++++++|+|++++..+.+.+++.+.|.+..
T Consensus 1 m~aiIlA~G~s~R~~~----~~K~l~~~~g~-pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~~~~~~------- 68 (196)
T 3rsb_A 1 MDALIMAGGKGTRMGG----VEKPLIKLCGR-CLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSAYKDYK------- 68 (196)
T ss_dssp CEEEEEC----CGGGG----SCGGGCEETTE-EHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHHTTTTT-------
T ss_pred CEEEEECCCCCCcCCC----CCccEEEECCE-EHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhhccCCC-------
Confidence 6899999999999997 79999999999 99999999999999999999999988888888876553211
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-e-cccCHHHHHHHHHH-----cCCcEEE
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-L-YRMDYMDFVQHHIN-----SGGDISV 245 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l-~~~dl~~ll~~h~~-----~~ad~ti 245 (526)
.+.++... ..|++++++.++..+ .+.++++.||+ + ....+.++++.|.+ .+.+..+
T Consensus 69 ~~~~~~~~----------~~g~~~si~~al~~~-------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~ 131 (196)
T 3rsb_A 69 NIVVIDTS----------GKGYIEDLNECIGYF-------SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALA 131 (196)
T ss_dssp EEEE------------------CCCCCTTTTTC-------SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEE
T ss_pred CEEEEECC----------CCCcHHHHHHHHHhC-------CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEE
Confidence 14443221 157777787776554 28899999999 3 44568999999987 5666666
Q ss_pred EEEEcc
Q 043870 246 CCLPVD 251 (526)
Q Consensus 246 ~~~~~~ 251 (526)
.+.+..
T Consensus 132 ~~~p~~ 137 (196)
T 3rsb_A 132 VMIPKE 137 (196)
T ss_dssp EEEETT
T ss_pred EEEEcc
Confidence 666653
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.70 E-value=9.1e-16 Score=148.72 Aligned_cols=215 Identities=15% Similarity=0.222 Sum_probs=138.1
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHH-HHHhhhcccCCCCc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSL-NRHISRTYNLGDGM 167 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l-~~~l~~~~~~~~~~ 167 (526)
...|.|||||||.|+||+ ...||+|+|++|+ |||+|+++++.+++ +++|+|++++..... .+++.
T Consensus 11 ~~~~~aiILAaG~s~Rm~---~~~~K~l~~i~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~--------- 77 (234)
T 1vpa_A 11 HHMNVAILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVF--------- 77 (234)
T ss_dssp CCCEEEEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCC---------
T ss_pred cccCeEEEEcCcchhhcC---CCCCceEEEECCe-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhc---------
Confidence 446899999999999998 3569999999999 99999999999998 899999999876432 22211
Q ss_pred ccCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEE
Q 043870 168 NFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISV 245 (526)
Q Consensus 168 ~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti 245 (526)
+.. .+... ..+ .+..++++.++..+++ ...+.+++++||+ +... .+.++++.+.+.++ .+
T Consensus 78 -~~~-~~~~~----~gg-------~~~~~sv~~al~~~~~---~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~--~i 139 (234)
T 1vpa_A 78 -HEK-VLGIV----EGG-------DTRSQSVRSALEFLEK---FSPSYVLVHDSARPFLRKKHVSEVLRRARETGA--AT 139 (234)
T ss_dssp -CTT-EEEEE----ECC-------SSHHHHHHHHHHHHGG---GCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EE
T ss_pred -cCC-ceEEe----CCC-------CcHHHHHHHHHHHhhh---cCCCEEEEecCcccCCCHHHHHHHHHHHHhcCC--EE
Confidence 111 12211 100 2377889998887742 1236788888999 5555 58889888776543 34
Q ss_pred EEEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhC
Q 043870 246 CCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHY 325 (526)
Q Consensus 246 ~~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~ 325 (526)
.+.+..+ ++...+++| + .+.++..- +..-..++|+++.+..+++...
T Consensus 140 ~~~~~~~------~~~~~~~~g-v-~~~~r~~~-------------------------~~~~~p~~f~~~~l~~~~~~~~ 186 (234)
T 1vpa_A 140 LALKNSD------ALVRVENDR-I-EYIPRKGV-------------------------YRILTPQAFSYEILKKAHENGG 186 (234)
T ss_dssp EEEECCS------EEEEEETTE-E-EEECCTTE-------------------------EEEEEEEEEEHHHHHHHHTTCC
T ss_pred EEEecCC------cEEEECCCC-c-ccCChhHe-------------------------eeecCCccccHHHHHHHHHhcC
Confidence 4444432 122335566 6 55443210 1111235889888876664310
Q ss_pred CCCCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 326 PEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 326 ~~~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
...+ ...++.. .+.++..+..++.|.|||||+||..|+..+..
T Consensus 187 -~~~~-~~~~~~~--~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 229 (234)
T 1vpa_A 187 -EWAD-DTEPVQK--LGVKIALVEGDPLCFKVTFKEDLELARIIARE 229 (234)
T ss_dssp -CCSS-SHHHHHT--TTCCCEEEECCGGGCCCCSTTHHHHHHHHHHH
T ss_pred -CCCc-HHHHHHH--cCCcEEEEECCchhcCCCCHHHHHHHHHHHhc
Confidence 0011 1122322 14567777767789999999999999876643
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=153.10 Aligned_cols=205 Identities=13% Similarity=0.093 Sum_probs=127.2
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
++.|||||||.|+||++ . ||+|+|++|+ |||+|+++. ..++++|+|++++ . +.+ +..
T Consensus 25 ~~~aiILAgG~s~Rm~~---~-~K~l~~i~gk-pli~~~l~~--~~~~~~ivvv~~~-~--~~~-~~~------------ 81 (236)
T 2px7_A 25 EVSVLIPAAGNGLRLGR---G-PKAFLQVGGR-TLLEWTLAA--FRDAAEVLVALPP-G--AEP-PKG------------ 81 (236)
T ss_dssp CCEEEEECCC----------C-CGGGCBCSSS-BHHHHHHHH--TTTCSEEEEEECT-T--CCC-CTT------------
T ss_pred ceEEEEEcCCCCccCCC---C-CCeEEEECCE-EHHHHHHHh--cCCCCeEEEEeCH-H--HHH-hhc------------
Confidence 46799999999999984 3 9999999999 999999999 6789999999986 1 111 110
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
..+.++.. . .|..++++.++..++ .+.+++++||+ ++.. .+..+++.+.+.++ .+.+.+
T Consensus 82 ~~v~~~~~--~---------~~~~~~i~~al~~~~------~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~i~~~~ 142 (236)
T 2px7_A 82 LGAVFLEG--G---------ATRQASVARLLEAAS------LPLVLVHDVARPFVSRGLVARVLEAAQRSGA--AVPVLP 142 (236)
T ss_dssp CSCEEEEC--C---------SSHHHHHHHHHHHCC------SSEEEECCTTCCCCCHHHHHHHHHHHHHHSE--EEEEEE
T ss_pred CCcEEEeC--C---------CchHHHHHHHHHHcC------CCeEEEecCccccCCHHHHHHHHHHHHhcCC--eEEEEe
Confidence 01333321 1 367889998887664 27799999998 5555 48888888766543 444444
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCC
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAN 329 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~ 329 (526)
..+ . ....+ +|++..+.++.. .+... ..++|+++.|..+++.......
T Consensus 143 ~~~--~----~~~~~-~G~v~~~~~~~~------------------------~~~~~-~~~~f~~~~l~~~~~~~~~~g~ 190 (236)
T 2px7_A 143 VPD--T----LMAPE-GEAYGRVVPREA------------------------FRLVQ-TPQGFFTALLREAHAYARRKGL 190 (236)
T ss_dssp CCS--E----EEEEC-SSSCEEEECGGG------------------------CEEEC-SCEEEEHHHHHHHHHHHHHHTC
T ss_pred cCC--c----EEEec-CCeEEecCChHh------------------------hcccc-CCeEEcHHHHHHHHHHHHhcCC
Confidence 432 1 11124 677776654321 01122 2467888877666543211001
Q ss_pred Ch--hhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 330 DF--GSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 330 d~--~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
.+ ...++.. .+.++..+..++.|.|||||+||..|+..+..
T Consensus 191 ~~~d~~~ll~~--~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 233 (236)
T 2px7_A 191 EASDDAQLVQA--LGYPVALVEGEATAFKITHPQDLVLAEALARV 233 (236)
T ss_dssp CCSSHHHHHHH--TTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC
T ss_pred CchhHHHHHHH--cCCcEEEEECCccccCCCCHHHHHHHHHHHHh
Confidence 11 1123322 24578888888899999999999999887654
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-15 Score=146.70 Aligned_cols=217 Identities=16% Similarity=0.167 Sum_probs=148.6
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccCh-hHHHHHhhhcccCCCCccc
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNS-QSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~-~~l~~~l~~~~~~~~~~~~ 169 (526)
++.|||||||.|+||+ ...||+|++++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+++..
T Consensus 7 ~~~aIIlAaG~g~Rmg---~~~~K~l~~l~Gk-pll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~---------- 72 (231)
T 3q80_A 7 EVVAIVPAAGSGERLA---VGVPKAFYQLDGQ-TLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH---------- 72 (231)
T ss_dssp CEEEEEECCCCCTTTC---SSSCGGGCEETTE-EHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG----------
T ss_pred ceEEEEECCCCCccCC---CCCCceEEEECCe-EHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC----------
Confidence 4899999999999998 4679999999999 99999999999885 999999999876 344444431
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~ 247 (526)
.+.++... .+..++++.++..+.+. ...+.++++.||. +...+ +..+++.+.+ +.+..+.+
T Consensus 73 ---~v~~v~gg-----------~~r~~sv~~gl~~~~~~--~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~ 135 (231)
T 3q80_A 73 ---RAMIVAGG-----------SNRTDTVNLALTVLSGT--AEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPV 135 (231)
T ss_dssp ---GCEEEECC-----------SSHHHHHHHHHGGGC-----CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEE
T ss_pred ---CeEEEcCC-----------CchHHHHHHHHHHhhhc--CCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEE
Confidence 03333211 23568899998777520 1247899999999 66555 7888888765 34566777
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
.++.+. +...+++|+|....++.. -+.+.+ -+.|+.+.|.+.++....+
T Consensus 136 ~p~~dt------~~~~~~~g~v~~~~~r~~------------------------l~~~qT-Pq~F~~~~L~~a~~~~~~~ 184 (231)
T 3q80_A 136 LPLSDT------IKAVDANGVVLGTPERAG------------------------LRAVQT-PQGFTTDLLLRSYQRGSLD 184 (231)
T ss_dssp ECCSSC------EEEECTTSBEEECCCGGG------------------------EEEECS-CEEEEHHHHHHHHHHHTC-
T ss_pred EeccCC------EEEEcCCCcEEEecchhh------------------------eEEEcC-CcEEEHHHHHHHHHHHHhh
Confidence 776552 122467788776654321 123344 4899999888877764332
Q ss_pred -CCChhhchHhhhh-cCCcEEEEEecceeeecCChhhHHHhchhh
Q 043870 328 -ANDFGSEVIPMAT-KDFNVQAYLFNDYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 328 -~~d~~~dil~~li-~~~~V~~~~~~~~w~dIgt~~d~~~An~~l 370 (526)
......|....+. .+.+|..+..+..++.|+||+|+..|+..+
T Consensus 185 n~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l 229 (231)
T 3q80_A 185 LPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV 229 (231)
T ss_dssp ----CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHh
Confidence 1111233332222 367788777777799999999999998765
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-16 Score=146.08 Aligned_cols=179 Identities=13% Similarity=0.102 Sum_probs=112.4
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
+++.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++|+|++++... +++. +
T Consensus 13 ~~~~~iILA~G~g~Rmg-----~~K~ll~i~g~-pll~~~l~~l~~~-~~~i~vv~~~~~~---~~~~-------~---- 71 (201)
T 2e8b_A 13 KVNTCYVLAGGKSKRFG-----EDKLLYEIKGK-KVIERVYETAKSV-FKEVYIVAKDREK---FSFL-------N---- 71 (201)
T ss_dssp SCCEEEEEEESSCCCCS-----TTHHHHHHHHH-HHHHHHHHHHHTT-CSEEEEEESCSGG---GGGG-------T----
T ss_pred cCceEEEECCCCCccCC-----CCcccceECce-EHHHHHHHHHHHh-CCEEEEEeCcHHH---hhcC-------C----
Confidence 34799999999999998 79999999999 9999999999988 9999999998654 2221 1
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHH-HHHHHHHcCCcEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMD-FVQHHINSGGDISVCC 247 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~-ll~~h~~~~ad~ti~~ 247 (526)
+.++.... +..|++++++.++..++. +.+++++||+ +.+.+ +.. ++ +.++++.
T Consensus 72 ---~~~v~~~~--------~~~g~~~~i~~al~~~~~------~~~lv~~~D~P~i~~~~i~~~l~------~~~~~v~- 127 (201)
T 2e8b_A 72 ---APVVLDEF--------EESASIIGLYTALKHAKE------ENVFVLSGDLPLMKKETVLYVLE------NFKEPVS- 127 (201)
T ss_dssp ---CCEEECCC--------SSCCHHHHHHHHHHHCSS------SEEEEEETTCTTCCHHHHHHHHH------TCCSSEE-
T ss_pred ---ceEEecCC--------CCCCcHHHHHHHHHHcCC------CCEEEEeCCcCcCCHHHHHHHHh------cCCEEEE-
Confidence 23333221 236999999999877743 7899999999 44554 555 54 1222211
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
. + +|+ .....|+| |+++++..+.+.....
T Consensus 128 --------------~-~-~g~----------------------------------~~p~~giy-~~~~~~~~l~~~~~~g 156 (201)
T 2e8b_A 128 --------------V-A-KTE----------------------------------KLHTLVGV-YSKKLLEKIEERIKKG 156 (201)
T ss_dssp --------------E-E-ESS----------------------------------SEEEEEEE-EEGGGHHHHHHHHHTT
T ss_pred --------------e-c-CCc----------------------------------eeeEEEEE-eChhHHHHHHHHHHcC
Confidence 0 0 111 12467999 9999775443211111
Q ss_pred CCChhhchHhhhhcCCcEEEEEec--ceee--ecCChhhHHHhchhh
Q 043870 328 ANDFGSEVIPMATKDFNVQAYLFN--DYWE--DIGTIKSFFDANLSL 370 (526)
Q Consensus 328 ~~d~~~dil~~li~~~~V~~~~~~--~~w~--dIgt~~d~~~An~~l 370 (526)
.....++++. .++..+.+. +.|. |||||+||.+++..+
T Consensus 157 -~~~~~~~l~~----~~~~~~~~~~~~~~~~~dintpedl~~~~~~~ 198 (201)
T 2e8b_A 157 -DYRIWALLKD----VGYNEVEIPEELRYTLLNMNTKEDLKRILAIE 198 (201)
T ss_dssp -CCCHHHHHHH----HCCEEEECCGGGGGGGCCSCCC----------
T ss_pred -CchHHHHHHH----CCeEEeccccccchhhcCCCCHHHHHHHHHHh
Confidence 1112344443 345566664 5799 999999999887644
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=143.34 Aligned_cols=186 Identities=12% Similarity=0.149 Sum_probs=113.5
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
++.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++||+++..+.+.+++. .
T Consensus 2 ~~~~iIlAgG~g~Rmg-----~~K~l~~i~g~-pll~~~l~~l~~~---~ivvv~~~~~~~~~~~~~----------~-- 60 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFG-----GDKLLAKIDNT-PIIMRTIRIYGDL---EKIIIVGKYVNEMLPLLM----------D-- 60 (197)
T ss_dssp CEEEEEECSCCTTCCC-----SSGGGSBSSSS-BHHHHHHHHTTTS---BCCEEECTTHHHHGGGCT----------T--
T ss_pred ceEEEEECCcCcccCC-----CCeeeCEeCce-EHHHHHHHHHHhC---CEEEEECCCHHHHHHHhc----------C--
Confidence 4799999999999998 49999999999 9999999999887 899999987544433322 0
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~~~ 249 (526)
+ + ++... .|..|++++++.++..+.+ .+.+++++||+ ++..+ +.++++.+ +.++++++...
T Consensus 61 ~-~-~v~~~--------~~~~G~~~si~~al~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~~- 123 (197)
T 3d5n_A 61 Q-I-VIYNP--------FWNEGISTSLKLGLRFFKD-----YDAVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPTH- 123 (197)
T ss_dssp S-C-EEECT--------TGGGCHHHHHHHHHHHTTT-----SSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEEE-
T ss_pred C-E-EEECC--------CCCCCHHHHHHHHHHhhcc-----CCcEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEEe-
Confidence 1 3 33321 1236999999999887742 36899999999 55554 77888776 44555433221
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCC
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAN 329 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~ 329 (526)
+| ++.. + .+|+++.+..+. .. ....
T Consensus 124 ----------------~g-------~~~~-----------------------P-------~~~~~~~l~~l~-~l-~g~~ 148 (197)
T 3d5n_A 124 ----------------KG-------ERGN-----------------------P-------VLISKSLFNEIE-KL-RGDV 148 (197)
T ss_dssp ----------------TT-------EECS-----------------------C-------EEEEHHHHHHHH-HC-CTTC
T ss_pred ----------------CC-------cccC-----------------------C-------EEECHHHHHHHH-cc-CCCc
Confidence 01 0111 1 378888887554 32 2111
Q ss_pred ChhhchHhhhhcCCcEEEEEec--ceeeecCChhhHHHhchhhcCC
Q 043870 330 DFGSEVIPMATKDFNVQAYLFN--DYWEDIGTIKSFFDANLSLTDK 373 (526)
Q Consensus 330 d~~~dil~~li~~~~V~~~~~~--~~w~dIgt~~d~~~An~~ll~~ 373 (526)
+. ..++... ..++..+..+ +.|.||+||+||..++..+...
T Consensus 149 ~~-~~~l~~~--~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~~~~ 191 (197)
T 3d5n_A 149 GA-RVILNKI--KIEELCFIECSEGVLIDIDKKEDLMRLRDFHPLE 191 (197)
T ss_dssp CT-HHHHTTS--CGGGEEEEECCGGGTCCTTTC-------------
T ss_pred cH-HHHHHhC--ccCeEEEEcCCCCcccCCCCHHHHHHHHHhhccc
Confidence 11 2222221 2346666654 5789999999999998766443
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-14 Score=153.37 Aligned_cols=212 Identities=17% Similarity=0.197 Sum_probs=143.4
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceee---CCcchhHHHHHHHHHh--------cC----CcEEEEEeccChhHHHH
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPI---GGCYRLIDVPMSNCIN--------SG----IKKIYILTQFNSQSLNR 155 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV---~g~~pLI~~~l~~l~~--------~g----i~~I~Iv~~~~~~~l~~ 155 (526)
.+|.+||||||.||||+ ...||+|+|| .|+ |+|+++++++.+ .| +..+++...+..+.+.+
T Consensus 101 ~kvavViLAGG~GTRLg---~~~PK~l~pv~~~~gk-~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~ 176 (505)
T 1jv1_A 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (505)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CceEEEEEcCCccccCC---CCCCCccceeecCCCC-cHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHH
Confidence 56999999999999997 5789999999 799 999999999876 36 77777777788889999
Q ss_pred HhhhcccCCCCcccCCCeEEEEecc-----cccC-------cCCCccccChHHHHHHHHH--HhhhhccCCCCeEEEEcC
Q 043870 156 HISRTYNLGDGMNFGDGFVEVLAAT-----QRQG-------ESGKKWFQGTADAVRQFIW--MFEDAKHRNIENILILSG 221 (526)
Q Consensus 156 ~l~~~~~~~~~~~~~~~~v~vl~~~-----~~~~-------~~~~~~~~Gt~~al~~~~~--~i~~~~~~~~e~~lil~g 221 (526)
|+.+...|+-. ...|.+.... ...+ ..-...+.||++.+..+.. .+++......+.++|+++
T Consensus 177 ~f~~~~~fGl~----~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~ 252 (505)
T 1jv1_A 177 FFTKHKYFGLK----KENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCV 252 (505)
T ss_dssp HHHHTGGGGSC----GGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEET
T ss_pred HHHhhhhcCCC----cCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEEC
Confidence 99753223211 0012221100 0000 0001235799998876643 222222245689999999
Q ss_pred Cee-cccCHHHHHHHHHHcCCcEEEEEEE-ccCCcCCCceEEEEcC-CCCeeeeeccCCccccccccccccccccchhhh
Q 043870 222 DHL-YRMDYMDFVQHHINSGGDISVCCLP-VDESRASDFGLMKIDE-TGRIRQFLEKPKGENLRSMQIDTTALGLSAQEA 298 (526)
Q Consensus 222 D~l-~~~dl~~ll~~h~~~~ad~ti~~~~-~~~~~~~~~g~v~~d~-~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~ 298 (526)
|++ +..+...++..|..+++++++.+.+ ..+ ...+|++..++ ..++++|.|+|..... ..+ +. -
T Consensus 253 Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~--~e~~Gvl~~~dg~~~vvEy~E~p~~~~~---~~~-------~~-g 319 (505)
T 1jv1_A 253 DNILVKVADPRFIGFCIQKGADCGAKVVEKTNP--TEPVGVVCRVDGVYQVVEYSEISLATAQ---KRS-------SD-G 319 (505)
T ss_dssp TBTTCCTTCHHHHHHHHHTTCSEEEEEEECCST--TCSCCEEEEETTEEEEECGGGSCHHHHH---CBC-------TT-S
T ss_pred CccccccchHHHHHHHHHcCCCEEEEEEEccCC--ccCcceEEEECCeEEEEEEeeCCHHHhh---hcc-------cc-c
Confidence 995 7777788999999999999998886 333 45789888752 2346777777763210 000 00 0
Q ss_pred cCCCceeeeeEEEEcHHHHHHHHHh
Q 043870 299 RNFPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 299 ~~~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
....+..|+|+|+|+.++|..+.+.
T Consensus 320 ~~~~~~~N~~~~~f~l~~L~~i~~~ 344 (505)
T 1jv1_A 320 RLLFNAGNIANHFFTVPFLRDVVNV 344 (505)
T ss_dssp SBSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred ccccceeeEEEEEecHHHHHHHHHh
Confidence 0134689999999999999877653
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-14 Score=150.66 Aligned_cols=352 Identities=15% Similarity=0.130 Sum_probs=201.2
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeC-CcchhHHHHHHHHHhcCCc-----EEEEE-eccChhHHHHHhh-hccc
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIG-GCYRLIDVPMSNCINSGIK-----KIYIL-TQFNSQSLNRHIS-RTYN 162 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~-g~~pLI~~~l~~l~~~gi~-----~I~Iv-~~~~~~~l~~~l~-~~~~ 162 (526)
+++.+||||||.||||+ ...||+|+||+ |+ |+|+++++++...+.. .++|. +.+..+.+.+||. +...
T Consensus 74 ~k~avViLAGGlGTRLg---~~~PK~llpV~~gk-~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~~~ 149 (505)
T 2oeg_A 74 QSTVVLKLNGGLGTGMG---LCDAKTLLEVKDGK-TFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPW 149 (505)
T ss_dssp HTEEEEEEECCCCGGGT---CCSCGGGSEEETTE-EHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHCHH
T ss_pred hcceEEEEcCCcccccC---CCCCCcccccCCCC-cHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhhhc
Confidence 36899999999999999 67899999999 99 9999999999987633 45444 4566888889997 4321
Q ss_pred CCC---Ccc-cCCCeEEEEeccc------ccCcCCCccccChHHHHHHHHH--HhhhhccCCCCeEEEEcCCeecc-cCH
Q 043870 163 LGD---GMN-FGDGFVEVLAATQ------RQGESGKKWFQGTADAVRQFIW--MFEDAKHRNIENILILSGDHLYR-MDY 229 (526)
Q Consensus 163 ~~~---~~~-~~~~~v~vl~~~~------~~~~~~~~~~~Gt~~al~~~~~--~i~~~~~~~~e~~lil~gD~l~~-~dl 229 (526)
|+- .+. |....+..+.... .....-...|.|+++.+..... .+++...+..+.++|.++|.+.. .|+
T Consensus 150 fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~ 229 (505)
T 2oeg_A 150 LYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK 229 (505)
T ss_dssp HHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH
T ss_pred cCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH
Confidence 221 111 2222222222110 0000011235799999875510 12211124568999999999874 467
Q ss_pred HHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEEc------CCCC---------eeeeeccCCccccccccccccccccc
Q 043870 230 MDFVQHHINSGGDISVCCLPVDESRASDFGLMKID------ETGR---------IRQFLEKPKGENLRSMQIDTTALGLS 294 (526)
Q Consensus 230 ~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d------~~g~---------V~~~~eKp~~~~~~~~~~~~~~l~~s 294 (526)
.++..|.++++++++.+.+.... ...+|++..+ .+|+ +.++.+-|...... . +
T Consensus 230 -~llg~~~~~~ad~~~~v~~k~~~-d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~-~---~------ 297 (505)
T 2oeg_A 230 -RVLAYMEKEKIDFLMEVCRRTES-DKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMES-F---Q------ 297 (505)
T ss_dssp -HHHHHHHHHTCSEEEEEEECCTT-CCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHH-H---H------
T ss_pred -HHHHHHHhcCCcEEEEEEEecCC-ccceeEEEEecccccccCCccccccCceeEEEeccCChhhhhc-c---c------
Confidence 89999999999999999887652 2368888773 4677 55555555432100 0 0
Q ss_pred hhhhcCCCceeeeeEEEEcHHHHHHHHHhh-----CCC-----CCC-----h-----hhchHhhhhc-CCcEEEEEec-c
Q 043870 295 AQEARNFPYIASMGIYLFKTEVLLKVLRWH-----YPE-----AND-----F-----GSEVIPMATK-DFNVQAYLFN-D 352 (526)
Q Consensus 295 ~~~~~~~~~l~~~Giyif~~~~l~~ll~~~-----~~~-----~~d-----~-----~~dil~~li~-~~~V~~~~~~-~ 352 (526)
-...-.+.++...+|+-+.+.++++.. .|. .-+ . .+-++.++++ -.+..++... .
T Consensus 298 ---g~~~f~~~Ninn~~~~l~~l~~~~~~~~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~~~~~~~~V~R~ 374 (505)
T 2oeg_A 298 ---DINKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMFESASAIVVPRS 374 (505)
T ss_dssp ---CTTTTCEEEEEEEEEEHHHHHHHHHHTTSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSCTTCEEEECCGG
T ss_pred ---CccccCeeEEEEEEEEHHHHHHHHhhhcCccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhcCcceEEEeccc
Confidence 001233589999999999998887762 110 000 0 0111222222 0123333332 2
Q ss_pred eeeecCChhhHHHhchhhcCCCCCcccC-CCCCcccCCCCCCCCeeec---CeeEee--eEECCCC-EEcceeeeceEEC
Q 043870 353 YWEDIGTIKSFFDANLSLTDKPPKFHFY-DPQKPIFTSPRFLPPSKIE---KCRVQD--SIISHGC-FLRECSVEHSIVG 425 (526)
Q Consensus 353 ~w~dIgt~~d~~~An~~ll~~~~~~~~~-~~~~~i~~~~~~~~~~~i~---~~~i~~--s~Ig~~~-~i~~~~v~~s~ig 425 (526)
.+..+.+..|+..+...+........+. ++. .. ...|.+.+. ...+.+ ..+..|. .|.++ .+-+|-
T Consensus 375 ~FsPvKn~~dl~~~~sdly~~~~~~~~~~~~~-~~----~~~p~i~l~p~~~~~~~~~~~r~~~g~psi~~~--~~L~v~ 447 (505)
T 2oeg_A 375 RFAPVKTCADLLALRSDAYVVTDDFRLVLDDR-CH----GHPPVVDLDSAHYKMMNGFEKLVQHGVPSLVEC--KRVTVK 447 (505)
T ss_dssp GCCCCSSHHHHHHHHSTTEEECTTCCEEECGG-GT----TCCCEEEECHHHHSSHHHHHHHSTTCCCBCTTE--EEEEEE
T ss_pred eeecccCCCCHHHHHHHHHhhcCCceEEEccc-cc----CcCCeEEEChhHcCcHHHHHHhcCCCCCccccC--cEEEEE
Confidence 5777888888888777665432200111 110 00 112222221 111111 2233331 22221 244566
Q ss_pred CCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCC
Q 043870 426 IRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNA 481 (526)
Q Consensus 426 ~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~ 481 (526)
..+..+.++.|++++++.+.. ...++.|.+|+.++|..|...-
T Consensus 448 G~~~f~~~v~l~G~v~i~a~~-------------~~~~~~ip~g~~l~n~~~~~~~ 490 (505)
T 2oeg_A 448 GLVQFGAGNVLTGTVTIENTD-------------SASAFVIPDGAKLNDTTASPQQ 490 (505)
T ss_dssp SSEECCTTCEEEEEEEEECCS-------------CSSCEECCTTCEEESCEECC--
T ss_pred cceEEccCcEEEEEEEEEecC-------------CCCcEEeCCCCEEeCceechhh
Confidence 667788888898888887620 1235788888888888776654
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=136.86 Aligned_cols=117 Identities=12% Similarity=0.194 Sum_probs=86.4
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
++++.+||||||.|+||+ ..||+|+|++|+ |||+|+++++.. ++++|+|++++..+.+ . .+
T Consensus 4 mm~~~~iILAgG~s~Rmg----~~~K~ll~i~G~-pli~~~l~~l~~-~~~~ivvv~~~~~~~~----~-~~-------- 64 (201)
T 1e5k_A 4 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMT-QLSHVVVNANRHQEIY----Q-AS-------- 64 (201)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHH-HCSCEEEECSSSHHHH----H-TT--------
T ss_pred CCcceEEEEcCCCCCcCC----CCCCceeeECce-eHHHHHHHHHHh-hCCEEEEEcCCcHHHH----h-hc--------
Confidence 456899999999999997 379999999999 999999999985 5999999999875332 1 11
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDI 243 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ 243 (526)
+ +.++...... ..|++++++.++..++. +.+++++||+ ++..+ +..+++. ..++++
T Consensus 65 ~---~~~v~~~~~~-------~~G~~~si~~~l~~~~~------~~vlv~~~D~P~i~~~~i~~l~~~--~~~~~~ 122 (201)
T 1e5k_A 65 G---LKVIEDSLAD-------YPGPLAGMLSVMQQEAG------EWFLFCPCDTPYIPPDLAARLNHQ--RKDAPV 122 (201)
T ss_dssp S---CCEECCCTTC-------CCSHHHHHHHHHHHCCS------SEEEEEETTCTTCCTTHHHHHHHT--CTTCSE
T ss_pred C---CeEEecCCCC-------CCCHHHHHHHHHHhCCC------CcEEEEeCCcCcCCHHHHHHHHhh--cCCCCE
Confidence 1 2233221110 15899999999887753 7899999999 66665 6777764 334443
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-13 Score=129.50 Aligned_cols=115 Identities=16% Similarity=0.246 Sum_probs=85.6
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|.|||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +|+|++++ .+. .+.+.+.++
T Consensus 1 m~aiILAgG~s~Rmg-----~~K~ll~~~G~-pli~~~~~~l~~~---~vvvv~~~-~~~-~~~~~~~~~---------- 59 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGK-KLIEWVLEKYSPF---QTVFVCRD-EKQ-AEKLSSRYE---------- 59 (208)
T ss_dssp CEEEEECCCCCTTTT-----SCGGGCEETTE-EHHHHHHHHHTTS---EEEEECSS-HHH-HHHHHTTSC----------
T ss_pred CEEEEECCCchhhCC-----CCCcccEECCe-eHHHHHHHHhcCC---CEEEEECC-HHH-HHHHHHhcC----------
Confidence 689999999999998 69999999999 9999999999887 89999975 233 333433221
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEE
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISV 245 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti 245 (526)
+.++.+... ..|..++++.++..+ . +.+ +++||+ +...+ +..+++.+.+.++++++
T Consensus 60 -~~~v~d~~~--------~~G~~~si~~gl~~~-~------~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~ 117 (208)
T 3ngw_A 60 -AEFIWDLHK--------GVGSIAGIHAALRHF-G------SCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALI 117 (208)
T ss_dssp -SCEECCTTC--------CCSHHHHHHHHHHHH-S------SEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred -CeEEecCCC--------CCChHHHHHHHHHHc-C------CCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEE
Confidence 233332221 158889999998777 4 678 999999 66665 78888877665666543
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.8e-15 Score=144.33 Aligned_cols=28 Identities=18% Similarity=0.289 Sum_probs=19.6
Q ss_pred cCCcEEEEEecce----eeecCChhhHHHhchhhc
Q 043870 341 KDFNVQAYLFNDY----WEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 341 ~~~~V~~~~~~~~----w~dIgt~~d~~~An~~ll 371 (526)
...++++|...++ |.|+++ |+++|..++
T Consensus 37 ~~~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l 68 (240)
T 3r8y_A 37 ETVQAFVNKKSGVLFGEWSEIKT---ILDENSKYI 68 (240)
T ss_dssp TTSEEEECSSEEEEEEEHHHHHH---HHHHTTTTE
T ss_pred CcceEEEcCCCeEEEccHHHHHH---HHHhcccee
Confidence 4456777766666 888888 777777654
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=143.23 Aligned_cols=197 Identities=16% Similarity=0.138 Sum_probs=126.2
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHh-cCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCIN-SGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+++.+||||||.|+||+ ...||+|+|++|+ |||+|+++++.+ .++++|+|+++ ..+.+.+++.
T Consensus 2 mki~aIILAaG~ssRmg---~~~pK~ll~l~Gk-PLi~~~l~~l~~~~~~~~IvVvt~-~~~~i~~~~~----------- 65 (371)
T 1w55_A 2 SEMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSS-NITYMKKFTK----------- 65 (371)
T ss_dssp CCEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEES-CHHHHHTTCS-----------
T ss_pred CccEEEEECCCCCccCC---CCCCcceEEECCe-EHHHHHHHHHHccCCCCeEEEEcC-CHHHHHHHhC-----------
Confidence 45899999999999998 3579999999999 999999999998 58999999998 4433332221
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti~~ 247 (526)
. +.++. .. .|..++++.++..++ .+.+++++||+ +... .+.++++.+.+. +.++.+
T Consensus 66 --~-v~~v~--~g---------~g~~~sv~~aL~~l~------~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~a~i~~ 123 (371)
T 1w55_A 66 --N-YEFIE--GG---------DTRAESLKKALELID------SEFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPA 123 (371)
T ss_dssp --S-SEEEE--CC---------SSHHHHHHHHHTTCC------SSEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEE
T ss_pred --C-CEEEe--CC---------CChHHHHHHHHHhcC------CCeEEEEeCCcccCCHHHHHHHHHHHHhc--CCEEEE
Confidence 0 23331 11 468899999876653 37899999999 5555 478888877654 344545
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceee-eeEEEEcHHHHHHHHHhhCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIAS-MGIYLFKTEVLLKVLRWHYP 326 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~-~Giyif~~~~l~~ll~~~~~ 326 (526)
.+..+. ++. + .+.+... .+.. -.-+.|+.+.+..+++...
T Consensus 124 ~~~~d~-------vk~-----v---~~t~~r~-----------------------~l~~~~~P~~f~~~~l~~~~~~~~- 164 (371)
T 1w55_A 124 LKVADT-------TLF-----D---NEALQRE-----------------------KIKLIQTPQISKTKLLKKALDQNL- 164 (371)
T ss_dssp ECCCSC-------EEE-----T---TEEECGG-----------------------GCCEECSCEEEEHHHHHHHTSSCC-
T ss_pred EEeecC-------eee-----e---eeecCcc-----------------------ceeecCCcceecHHHHHHHHHhcc-
Confidence 444321 000 0 0111100 0000 0125688887766543311
Q ss_pred CCCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhc
Q 043870 327 EANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDAN 367 (526)
Q Consensus 327 ~~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An 367 (526)
...+ ...++.. .+.++..+..+..|.||+||+||..|+
T Consensus 165 ~~td-~~~ll~~--~g~~V~~v~~~~~~~dIdTpeDL~~Ae 202 (371)
T 1w55_A 165 EFTD-DSTAIAA--MGGKIWFVEGEENARKLTFKEDLKKLD 202 (371)
T ss_dssp CCSS-HHHHHHT--TTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred cccC-HHHHHHh--CCCcEEEEECCccccCCCCHHHHHHHH
Confidence 0011 0122222 246788888778899999999999998
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-13 Score=135.51 Aligned_cols=143 Identities=17% Similarity=0.202 Sum_probs=88.9
Q ss_pred CCCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eeee-ceEECCCcEECCCCEEe------------ceEEEC
Q 043870 380 YDPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSVE-HSIVGIRSRLEYGVELK------------DTMMMG 443 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v~-~s~ig~~~~I~~~~~i~------------~~v~~~ 443 (526)
++|.+.+.+.+.+++++.| +.|.|. ++.||++|+|++ +.|. ++.||++|.|+++|.|. ..+.+|
T Consensus 4 I~p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG 83 (270)
T 1j2z_A 4 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG 83 (270)
T ss_dssp BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEEC
Confidence 3444444444444444444 334443 466666666653 4443 66777777776666663 223333
Q ss_pred Ccc-cchhHHHHHHhhCC----CcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----
Q 043870 444 ADY-YQTEAEIAALLAEG----KVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT----- 512 (526)
Q Consensus 444 ~~~-~~~~~~~~~~~~~~----~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~----- 512 (526)
++. +.... .+..+ ..++.||+++.|. +++|+++|.||++++|.+...+..+.+++++++|+.+++
T Consensus 84 ~~~~I~~~~----~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v 159 (270)
T 1j2z_A 84 EDNLIREFC----MINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFV 159 (270)
T ss_dssp SSCEECTTC----EECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTC
T ss_pred CCCEECCCe----EEcCCeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCCc
Confidence 221 00000 01111 1247889998887 588999999999999999988889999999999998876
Q ss_pred EECCCCEECCCccC
Q 043870 513 VVLKNTTIKDGTII 526 (526)
Q Consensus 513 ~i~~~~~i~~gt~i 526 (526)
.||++++|++|++|
T Consensus 160 ~IG~~a~Ig~~s~V 173 (270)
T 1j2z_A 160 RIAKGCMIAGKSAL 173 (270)
T ss_dssp EECTTCEECTTCEE
T ss_pred EeCCceEEecCcEe
Confidence 46777777777653
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.8e-13 Score=130.67 Aligned_cols=142 Identities=17% Similarity=0.226 Sum_probs=88.2
Q ss_pred ccCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eeee-ceEECCCcEECCCCEE-------------eceEEE
Q 043870 378 HFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVE-HSIVGIRSRLEYGVEL-------------KDTMMM 442 (526)
Q Consensus 378 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~-~s~ig~~~~I~~~~~i-------------~~~v~~ 442 (526)
.++++.+.+...+.++|.+.|.. ++.||++|+|++ +.|. ++.||+++.|+++|.| ...+.+
T Consensus 7 a~I~~~a~ig~~v~I~~~~~I~~----~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~I 82 (259)
T 3hsq_A 7 AIIDPKAELHESVEVGPYSIIEG----NVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVI 82 (259)
T ss_dssp CEECTTCEECTTCEECTTCEECS----SCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEE
T ss_pred cEECCCCEECCCCEECCCCEECC----CCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEE
Confidence 44555666666666666666532 355555555553 3342 4666777666666666 444555
Q ss_pred CCcccchhHHHHHHhhCC---CcceEECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----E
Q 043870 443 GADYYQTEAEIAALLAEG---KVPVGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----V 513 (526)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~---~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~ 513 (526)
|++..=.+. ..+..+ ..++.||+++.|.. ++|+++|.||+++.|++...+..+.+++++++|+.+++ .
T Consensus 83 G~~~~Ig~~---~~I~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~ 159 (259)
T 3hsq_A 83 GDHNIFREY---SNIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCF 159 (259)
T ss_dssp CSSCEECTT---CEEECCSBTTBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTTCE
T ss_pred CCCcEECCC---CEECCCccCCCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCCCE
Confidence 543111000 001101 11367777777764 88888999999999999988888999999999998866 4
Q ss_pred ECCCCEECCCccC
Q 043870 514 VLKNTTIKDGTII 526 (526)
Q Consensus 514 i~~~~~i~~gt~i 526 (526)
||++++|++|++|
T Consensus 160 Ig~~~~Vg~~s~V 172 (259)
T 3hsq_A 160 VGDYSMVAGLAKV 172 (259)
T ss_dssp ECTTCEECSSEEE
T ss_pred ECCCCEECCCCEE
Confidence 5666666666653
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.1e-13 Score=131.96 Aligned_cols=146 Identities=12% Similarity=0.169 Sum_probs=91.8
Q ss_pred cccCCCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eeee-ceEECCCcEECCCCEEec------------eE
Q 043870 377 FHFYDPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSVE-HSIVGIRSRLEYGVELKD------------TM 440 (526)
Q Consensus 377 ~~~~~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v~-~s~ig~~~~I~~~~~i~~------------~v 440 (526)
...++|.+.+.+.+.+++++.| +.|.|. ++.||++|.|+. +.|. ++.||++|.|+++|.|.. .+
T Consensus 22 ~~~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v 101 (283)
T 4eqy_A 22 MSRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRL 101 (283)
T ss_dssp -CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEE
T ss_pred CcccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceE
Confidence 3456777777666666666666 455554 377777777763 4553 577777777777777731 33
Q ss_pred EECCcccchhHHHHHHhhCC----CcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE---
Q 043870 441 MMGADYYQTEAEIAALLAEG----KVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT--- 512 (526)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~----~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~--- 512 (526)
++|++..=.+. ..+..| ..++.||++|.|. +++|+++|.||++|.|++...+.++.+++++++|+.+++
T Consensus 102 ~IG~~~~Ig~~---~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~ 178 (283)
T 4eqy_A 102 VIGDRNTIREF---TTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQ 178 (283)
T ss_dssp EECSSCEECTT---EEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred EECCCcccCcc---eeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcC
Confidence 44432100000 001111 1126677777776 477888888888888888888888889999999988866
Q ss_pred --EECCCCEECCCcc
Q 043870 513 --VVLKNTTIKDGTI 525 (526)
Q Consensus 513 --~i~~~~~i~~gt~ 525 (526)
.||++++|++|++
T Consensus 179 ~v~Ig~~~vvg~~s~ 193 (283)
T 4eqy_A 179 YVRIGAHSMLGGASA 193 (283)
T ss_dssp TCEECTTCEECTTCE
T ss_pred CeEECCCcEECCCCe
Confidence 4566666666665
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-14 Score=151.75 Aligned_cols=114 Identities=11% Similarity=0.164 Sum_probs=85.0
Q ss_pred CCCCCeee-cCeeEe-eeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEEC
Q 043870 391 RFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIG 467 (526)
Q Consensus 391 ~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig 467 (526)
.+.+++.| ..+.+. ++.||++|+|++ +.|.+++||++|.|+++|.|.++++..+ +.||
T Consensus 275 ~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~-------------------~~Ig 335 (496)
T 3c8v_A 275 GSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERN-------------------CVTA 335 (496)
T ss_dssp -CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEES-------------------CEEC
T ss_pred ccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCC-------------------CEEC
Confidence 34444444 233333 578888888874 6778899999999999999997666655 8999
Q ss_pred CCCEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEE-CCCCEECCCcc
Q 043870 468 RDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVV-LKNTTIKDGTI 525 (526)
Q Consensus 468 ~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i-~~~~~i~~gt~ 525 (526)
+++.|.+|+||++|.||.+++|.++. ....++++++.|+.|+++. ..++.|+++++
T Consensus 336 ~~a~I~gv~IGd~v~IG~~a~I~~~~--~~~v~IG~~a~IGagsvV~~~~~~~I~~~s~ 392 (496)
T 3c8v_A 336 HGGKIINAHLGDMIFTGFNSFLQGSE--SSPLKIGDGCVVMPHTIIDLEEPLEIPAGHL 392 (496)
T ss_dssp TTCEEESEEEEETCEECTTCEEECCS--SSCEEECTTCEECTTCEEECSSCEEECSSEE
T ss_pred CCcEEcCceECCCcEECCCCEEeCCC--CcceEECCCCEECCCCEEecCCCcEeCCCCE
Confidence 99999999999999999999998762 2346778888887776552 15667777665
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6.5e-13 Score=130.39 Aligned_cols=135 Identities=14% Similarity=0.255 Sum_probs=95.9
Q ss_pred HHHhchhhcCCCCC--cccCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eeee-----ceEECCCcEECCCC
Q 043870 363 FFDANLSLTDKPPK--FHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVE-----HSIVGIRSRLEYGV 434 (526)
Q Consensus 363 ~~~An~~ll~~~~~--~~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~-----~s~ig~~~~I~~~~ 434 (526)
..++|+.++...|. +.+++....+.+.+.+.|++.|.+ ++.||++|+|++ |.|. +++||++|.|+++|
T Consensus 37 ~~~~~~~~~~~~p~~~~~~~~~~~~I~~~~~I~~~a~I~g----~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~ 112 (247)
T 1qre_A 37 ITVDEFSNIRENPVTPWNPEPSAPVIDPTAYIDPQASVIG----EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGV 112 (247)
T ss_dssp -CCCCCCSEECCCCBTTBSSCCCCEECTTCEECTTCEEEE----SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTC
T ss_pred chhhhhhhccCCCCccccccCCCcEECCCcEECCCCEEeC----CcEECCCCEECCCcEEecCCCCCEEECCCCEECCCe
Confidence 44567776555443 556666777777778888777732 455666666653 3332 45999999999999
Q ss_pred EEece-----------------------EEECCcccchhHHHHHHhhCCCcceEECCCCEEec-eEECCCCEECCCcEEc
Q 043870 435 ELKDT-----------------------MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKIGKNVIIA 490 (526)
Q Consensus 435 ~i~~~-----------------------v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~ 490 (526)
.|... +++|++ +.||++|.|.+ |+||++|.||.+++|.
T Consensus 113 ~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~------------------v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~ 174 (247)
T 1qre_A 113 VLHALETINEEGEPIEDNIVEVDGKEYAVYIGNN------------------VSLAHQSQVHGPAAVGDDTFIGMQAFVF 174 (247)
T ss_dssp EEEECCSBCTTSCBCGGGCEEETTEEESEEECTT------------------CEECTTCEEEEEEEECTTCEECTTCEEE
T ss_pred EEEecccccccCcccccceeeccCccCceEECCC------------------CEECCCCEEcCCcEECCCCEECCCCEEe
Confidence 99753 677776 78888888887 9999999999999987
Q ss_pred cCCCcCCccccCCCeEEccCcEE----ECCCCEECCCccC
Q 043870 491 NKDGVEEAERPSDGFYIRSGITV----VLKNTTIKDGTII 526 (526)
Q Consensus 491 ~~~~v~~~~~~~~~~~I~~g~~~----i~~~~~i~~gt~i 526 (526)
+ .+++++++|+.|+++ |+++++|++|++|
T Consensus 175 ~-------v~Ig~~~~IgagsvV~~~~I~~~~~v~~g~vv 207 (247)
T 1qre_A 175 K-------SKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVV 207 (247)
T ss_dssp E-------EEECTTCEECTTCEEESCEECTTBEECTTCEE
T ss_pred c-------eEECCCCEECCCCEECCeEeCCCCEECCCCEE
Confidence 5 356667777766665 5667777776653
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=132.21 Aligned_cols=64 Identities=22% Similarity=0.259 Sum_probs=54.6
Q ss_pred ceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 463 PVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 463 ~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
++.||+++.|. +++|+++|+||++|++++...+..+.+++++++|+.+++ .||++++|++|++|
T Consensus 132 ~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~V 201 (305)
T 3t57_A 132 KTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVV 201 (305)
T ss_dssp CEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred ccEEccCccccceEEEeCceEeCCceEECCCcccCCCCEECCceEEcCCCEEcCCeEECCCCEEcCCCeE
Confidence 47778888886 589999999999999999999999999999999998875 57888888888764
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-12 Score=132.80 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=39.4
Q ss_pred ECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCcc
Q 043870 466 IGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTI 525 (526)
Q Consensus 466 Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~ 525 (526)
||++++|.+ +.|++|++||++|.|+....+.+..++|++++|+.+++ .|+++++|+++++
T Consensus 225 Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~ 290 (341)
T 3eh0_A 225 IGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGM 290 (341)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECSSEEECTTCE
T ss_pred eccceEECCCCEEeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEECCCCEEeeCCE
Confidence 333333432 55667777777777777777778888888888887765 3455555555554
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=129.01 Aligned_cols=142 Identities=16% Similarity=0.187 Sum_probs=86.9
Q ss_pred ccCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eeee-ceEECCCcEECCCCEEe-------------ceEEE
Q 043870 378 HFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVE-HSIVGIRSRLEYGVELK-------------DTMMM 442 (526)
Q Consensus 378 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~-~s~ig~~~~I~~~~~i~-------------~~v~~ 442 (526)
.++++.+.+...+.++|+++|.. ++.||++|+|+. +.|. ++.||++|+|++++.|. ..+.+
T Consensus 11 a~I~~~a~Ig~~v~I~~~~~I~~----~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~I 86 (266)
T 3r0s_A 11 AVIEEGAQLGDDVVIEAYAYVSK----DAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVI 86 (266)
T ss_dssp CEECTTCEECTTCEECTTCEECT----TCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEE
T ss_pred CEECCCCEECCCCEECCCCEECC----CCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEE
Confidence 34556666666666666665532 355555555553 3332 56777777777666664 34444
Q ss_pred CCcccchhHHHHHHhhCC----CcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----
Q 043870 443 GADYYQTEAEIAALLAEG----KVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT----- 512 (526)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~----~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~----- 512 (526)
|++..=.+. ..+..| ..++.||++|.|. +++|+++|+||++|.|++...+..+.+++++++|+.+++
T Consensus 87 G~~~~Ig~~---~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v 163 (266)
T 3r0s_A 87 GKNATIREF---ATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV 163 (266)
T ss_dssp CTTCEECTT---CEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred CCCCEECCc---eEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCCc
Confidence 443110000 001111 1236777777776 477888888888888888888888889999999998876
Q ss_pred EECCCCEECCCccC
Q 043870 513 VVLKNTTIKDGTII 526 (526)
Q Consensus 513 ~i~~~~~i~~gt~i 526 (526)
.||++++|++|+++
T Consensus 164 ~Ig~~a~Vg~~s~V 177 (266)
T 3r0s_A 164 KVGEGCMIAGASAL 177 (266)
T ss_dssp EECTTCEECSSCBB
T ss_pred EECCCCEEccCCeE
Confidence 45667777776654
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=133.71 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=39.7
Q ss_pred eEECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCcc
Q 043870 464 VGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTI 525 (526)
Q Consensus 464 ~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~ 525 (526)
+.||++++|.+ +.|++|++||++|.|.+...+....++|++++|+.+++ .|+++++|+++++
T Consensus 228 t~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~ 295 (357)
T 4e79_A 228 TILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIADNVTLTGMSM 295 (357)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSEEECTTCE
T ss_pred ccccCCcccCCCcccCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEECCCCEEeecCE
Confidence 33444444443 56667777777777777777777788888888887755 3455555555443
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-12 Score=127.75 Aligned_cols=145 Identities=18% Similarity=0.209 Sum_probs=85.2
Q ss_pred cCCCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eee-eceEECCCcEECCCCEEe------------ceEEE
Q 043870 379 FYDPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELK------------DTMMM 442 (526)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~------------~~v~~ 442 (526)
+++|.+.+.+.+.+++.+.| +.+.|. ++.||++|+|++ +.| .++.||++|+|+++|.|. ..+.+
T Consensus 9 ~I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~I 88 (265)
T 4e6u_A 9 LIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEI 88 (265)
T ss_dssp CBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEE
T ss_pred eECCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEE
Confidence 34444444444444444444 233332 366666666663 444 257777777777777773 24455
Q ss_pred CCcccchhHHHHHHhhCC----CcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----
Q 043870 443 GADYYQTEAEIAALLAEG----KVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT----- 512 (526)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~----~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~----- 512 (526)
|++..=.+. ..+..| ..++.||+++.|. ++.|++++.||++|.|.+...+..+.+++++++|+.+++
T Consensus 89 G~~~~Ig~~---~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v 165 (265)
T 4e6u_A 89 GNNNLIREH---CSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFC 165 (265)
T ss_dssp CSSCEECTT---CEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTC
T ss_pred CCCeEECCc---eEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCc
Confidence 543110000 001111 0125666666665 477778888888888888888888888899999988866
Q ss_pred EECCCCEECCCccC
Q 043870 513 VVLKNTTIKDGTII 526 (526)
Q Consensus 513 ~i~~~~~i~~gt~i 526 (526)
.|+++++|++|++|
T Consensus 166 ~Ig~~~~i~~~svV 179 (265)
T 4e6u_A 166 KIDSYSMIGGASLI 179 (265)
T ss_dssp EECTTCEECTTCEE
T ss_pred EECCCCEEcCCCEE
Confidence 45666667666653
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.6e-12 Score=136.29 Aligned_cols=218 Identities=16% Similarity=0.200 Sum_probs=143.2
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeC---CcchhHHHHHHHHHhc--------C------CcEEEEEeccChhHH
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIG---GCYRLIDVPMSNCINS--------G------IKKIYILTQFNSQSL 153 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~---g~~pLI~~~l~~l~~~--------g------i~~I~Iv~~~~~~~l 153 (526)
.++.+||||||.||||+ ...||+|+||+ |+ |+|+++++++... | +..+++.+++..+.+
T Consensus 102 gkvavvlLaGG~GTRLg---~~~PK~l~~v~l~~gk-~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t 177 (486)
T 2yqc_A 102 GEVAVLLMAGGQGTRLG---SSAPKGCFNIELPSQK-SLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNAT 177 (486)
T ss_dssp TCEEEEEEEESBCGGGT---CSSBGGGCBCCCTTCC-BHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHH
T ss_pred CCeEEEEEcCCccccCC---CCCCCccceecCCCCC-cHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHH
Confidence 36899999999999995 67899999999 99 9999999999986 6 888889999999999
Q ss_pred HHHhhhcccCCCCcc----cCCCeEEEEeccc-----ccCcCCCccccChHHHHHHHHH--HhhhhccCCCCeEEEEcCC
Q 043870 154 NRHISRTYNLGDGMN----FGDGFVEVLAATQ-----RQGESGKKWFQGTADAVRQFIW--MFEDAKHRNIENILILSGD 222 (526)
Q Consensus 154 ~~~l~~~~~~~~~~~----~~~~~v~vl~~~~-----~~~~~~~~~~~Gt~~al~~~~~--~i~~~~~~~~e~~lil~gD 222 (526)
.+|+.+...|+-... |....+..+.... .....-...|.|+++.+..... .+++...+..+.+.+.+.|
T Consensus 178 ~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vD 257 (486)
T 2yqc_A 178 ESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVD 257 (486)
T ss_dssp HHHHHHTGGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETT
T ss_pred HHHHhhccccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCC
Confidence 999976422332111 1111111111100 0000001125799888765532 2333333577899999999
Q ss_pred eecc--cCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEEcC-CC--CeeeeeccCCccccccccccccccccchhh
Q 043870 223 HLYR--MDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDE-TG--RIRQFLEKPKGENLRSMQIDTTALGLSAQE 297 (526)
Q Consensus 223 ~l~~--~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d~-~g--~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~ 297 (526)
.+.- .| ..++..|..+++++++.+.+.... ....|++.... +| +|++|.|+|..... ..+.. .+
T Consensus 258 N~l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~~-~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~---~~~~~----~~-- 326 (486)
T 2yqc_A 258 NCLVKVAD-PIFIGFAIAKKFDLATKVVRKRDA-NESVGLIVLDQDNQKPCVIEYSEISQELAN---KKDPQ----DS-- 326 (486)
T ss_dssp BTTCCTTC-HHHHHHHHHHTCSEEEEEEECCST-TCCCCEEEEETTTTEEEEECGGGSCHHHHH---CEETT----EE--
T ss_pred CceeeccC-HHHHHHHHHcCCCEEEEEEEcCCC-CCceeEEEEEecCCCEEEEEEecCCHHHhh---ccccc----cc--
Confidence 8443 34 457888999999999988776432 24578877532 45 58999998864210 00000 00
Q ss_pred hcCCCceeeeeEEEEcHHHHHHHHHh
Q 043870 298 ARNFPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 298 ~~~~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
-....+..|+|+|+|+.++|...++.
T Consensus 327 ~~~~~~~~Ni~~~~~~l~~L~~~l~~ 352 (486)
T 2yqc_A 327 SKLFLRAANIVNHYYSVEFLNKMIPK 352 (486)
T ss_dssp EEESSCEEEEEEEEEEHHHHHHHHHH
T ss_pred ccccccceeEEEEEEeHHHHHHHHHh
Confidence 00134688999999999999875654
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.8e-12 Score=130.88 Aligned_cols=62 Identities=21% Similarity=0.366 Sum_probs=43.6
Q ss_pred eEECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEE-----ECCCCEECCCcc
Q 043870 464 VGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITV-----VLKNTTIKDGTI 525 (526)
Q Consensus 464 ~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~-----i~~~~~i~~gt~ 525 (526)
+.||++++|.+ +.|+++++||++|.|.+...+....++|++++|+.++.+ ||++++|+++++
T Consensus 245 t~IG~~~~I~~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~ 312 (372)
T 3pmo_A 245 TLIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTM 312 (372)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECSSEEECTTCE
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEECCCCEEeeCCE
Confidence 34444445543 666777888888888888888888899999999877663 555666655554
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4.3e-12 Score=125.44 Aligned_cols=144 Identities=16% Similarity=0.210 Sum_probs=86.9
Q ss_pred CCCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eee-eceEECCCcEECCCCEEec------------eEEEC
Q 043870 380 YDPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKD------------TMMMG 443 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~------------~v~~~ 443 (526)
++|.+.+.+.+.+++.+.| +.+.|. ++.||++|+|++ +.| .++.||++|.|+++|.|.. .+.+|
T Consensus 8 I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG 87 (262)
T 2qia_A 8 VHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIG 87 (262)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEEC
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEEC
Confidence 3344444444444444444 233333 366667776653 444 3677777777777777753 34444
Q ss_pred CcccchhHHHHHHhhCC----CcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----E
Q 043870 444 ADYYQTEAEIAALLAEG----KVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----V 513 (526)
Q Consensus 444 ~~~~~~~~~~~~~~~~~----~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~ 513 (526)
++..=.+. ..+..+ ..++.||+++.|. +++|.+++.||++++|.+...+..+.+++++++|+.+++ .
T Consensus 88 ~~~~Ig~~---~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v~ 164 (262)
T 2qia_A 88 DRNRIRES---VTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCI 164 (262)
T ss_dssp SSCEECTT---CEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred CCceeCCC---CEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCCCE
Confidence 43100000 000011 1236777777776 477778888888888888888888888899999987765 5
Q ss_pred ECCCCEECCCccC
Q 043870 514 VLKNTTIKDGTII 526 (526)
Q Consensus 514 i~~~~~i~~gt~i 526 (526)
||++++|++|++|
T Consensus 165 Ig~~~~ig~~s~V 177 (262)
T 2qia_A 165 IGAHVMVGGCSGV 177 (262)
T ss_dssp ECTTCEECSSCEE
T ss_pred ECCCCEEccCCEE
Confidence 6777777777753
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-11 Score=125.64 Aligned_cols=210 Identities=12% Similarity=0.083 Sum_probs=145.3
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceee---CCcchhHHHHHHHHHh-------------cCCcEEEEEeccChhHHH
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPI---GGCYRLIDVPMSNCIN-------------SGIKKIYILTQFNSQSLN 154 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV---~g~~pLI~~~l~~l~~-------------~gi~~I~Iv~~~~~~~l~ 154 (526)
.++.+|+||||.||||+ ...||+|+|| .|+ |+++++++++.+ .++.-+++...+..+.+.
T Consensus 34 gkvavvlLAGG~GTRLG---~~~PK~~~~Vgl~~gk-s~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~ 109 (405)
T 3oc9_A 34 GKTALITPAGGQGSRLG---FEHPKGMFVLPFEIPK-SIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEIN 109 (405)
T ss_dssp TCEEEEEECCSBCTTTT---CCSBGGGCEECSSSCE-EHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHH
T ss_pred CceEEEEecCCCccccc---CCCCCccccccCCCCC-cHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHH
Confidence 46899999999999996 5789999999 899 999999998864 578877788888888999
Q ss_pred HHhhhcccCCCCcccCCCeEEEEec-----ccccC-------cCCCccccChHHHHHHHH--HHhhhhccCCCCeEEEEc
Q 043870 155 RHISRTYNLGDGMNFGDGFVEVLAA-----TQRQG-------ESGKKWFQGTADAVRQFI--WMFEDAKHRNIENILILS 220 (526)
Q Consensus 155 ~~l~~~~~~~~~~~~~~~~v~vl~~-----~~~~~-------~~~~~~~~Gt~~al~~~~--~~i~~~~~~~~e~~lil~ 220 (526)
+++.+...|+-.. ..|.+... ....+ ..-...|.|+++...... ..+++...+..+.+++.+
T Consensus 110 ~~f~~~~~fGl~~----~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~n 185 (405)
T 3oc9_A 110 NYFKEHQYFGLSS----EQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHN 185 (405)
T ss_dssp HHHHHTGGGGSCT----TSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEC
T ss_pred HHHHhCcccCCCc----cceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEe
Confidence 9998643233210 01221110 00000 000122468887776543 224433335678999999
Q ss_pred CCe-ecccCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEE-cCCCCeeeeeccCCccccccccccccccccchhhh
Q 043870 221 GDH-LYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKI-DETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEA 298 (526)
Q Consensus 221 gD~-l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~-d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~ 298 (526)
.|. +.......++..|.++++++++-+.+...+ ....|++.. |...+|++|.|.|.....+ ..+..
T Consensus 186 vDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~-dek~Gvl~~~dg~~~vvEysei~~e~e~~--~~~g~--------- 253 (405)
T 3oc9_A 186 VDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFK-EEKVGVLVKEQERIKVVEYTELTDELNKQ--LSNGE--------- 253 (405)
T ss_dssp TTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCST-TCSCCEEEEETTEEEEECGGGCCTTTTCB--CTTSC---------
T ss_pred CCCcccccCCHHHHHHHHHcCCCEEEEEEECCCC-CCccceEEEECCeeEEEEEeeCCHHHhhc--CCCCc---------
Confidence 999 888888999999999999999988887542 146788774 5555899999987751110 01110
Q ss_pred cCCCceeeeeEEEEcHHHHHHHH
Q 043870 299 RNFPYIASMGIYLFKTEVLLKVL 321 (526)
Q Consensus 299 ~~~~~l~~~Giyif~~~~l~~ll 321 (526)
...+..|+++++|+.++|.+++
T Consensus 254 -l~fn~~Ni~~h~fs~~fL~~i~ 275 (405)
T 3oc9_A 254 -FIYNCGHISINGYSTSFLEKAA 275 (405)
T ss_dssp -BSSCEEEEEEEEEEHHHHHHHT
T ss_pred -eeeccceeEeeecCHHHHHHhh
Confidence 1345788999999999998765
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.1e-12 Score=129.88 Aligned_cols=168 Identities=20% Similarity=0.260 Sum_probs=86.0
Q ss_pred eecCChhhHHHhchh-hcCCCCCcccCCCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eee-eceEECCCcE
Q 043870 355 EDIGTIKSFFDANLS-LTDKPPKFHFYDPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSV-EHSIVGIRSR 429 (526)
Q Consensus 355 ~dIgt~~d~~~An~~-ll~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v-~~s~ig~~~~ 429 (526)
+-+.+|...+..... +.........++|++.+.+++.+++++.| +++.|. ++.||++|+|+. +.| .++.||++|.
T Consensus 74 ~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~ 153 (341)
T 3eh0_A 74 LVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSR 153 (341)
T ss_dssp EECSCHHHHHHHHHHHHCCCCCSCCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred EEeCCHHHHHHHHHHHhcccCCccCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcE
Confidence 345666654433333 33333344567777777777777777776 345554 256666666653 344 4555555555
Q ss_pred ECCCCEEeceEEECCccc-chhHHHHHHh-hC--------C-------CcceEECCCCEEe-ceEEC----CCCEECCCc
Q 043870 430 LEYGVELKDTMMMGADYY-QTEAEIAALL-AE--------G-------KVPVGIGRDTKIK-NCIID----KNAKIGKNV 487 (526)
Q Consensus 430 I~~~~~i~~~v~~~~~~~-~~~~~~~~~~-~~--------~-------~~~~~Ig~~~~i~-~~iI~----~~~~Ig~~~ 487 (526)
|+++++|.+.+.+|++.. ..++ .+ +. | ..++.||+++.|. +|.|+ +++.||+++
T Consensus 154 I~~~~~I~~~~~IG~~~~I~~g~----~I~~~~fg~~~~~~~~~~i~~~g~v~IGd~v~Ig~~~~I~~~~~~~~~Ig~~~ 229 (341)
T 3eh0_A 154 LWANVTIYHEIQIGQNCLIQSGT----VVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTIIGNGV 229 (341)
T ss_dssp ECSSCEECTTCEECSSCEECTTC----EEEECCSCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTC
T ss_pred ECCCcEECCCCEECCccEEcCCc----EECCccccccccCCccccccccCcEEECCCcEECCccEeeccccCceEeccce
Confidence 555554433333333200 0000 00 00 0 0124455555554 34443 344455555
Q ss_pred EEccCCCcCCccccCCCeEEccCc-----EEECCCCEECCCccC
Q 043870 488 IIANKDGVEEAERPSDGFYIRSGI-----TVVLKNTTIKDGTII 526 (526)
Q Consensus 488 ~i~~~~~v~~~~~~~~~~~I~~g~-----~~i~~~~~i~~gt~i 526 (526)
.|.+...+..+.++++++.|+.++ +.||+++.||++++|
T Consensus 230 ~I~~~v~I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V 273 (341)
T 3eh0_A 230 IIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVI 273 (341)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEE
T ss_pred EECCCCEEeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEE
Confidence 555555555566666666666443 467888888888764
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.33 E-value=6.2e-12 Score=129.99 Aligned_cols=170 Identities=16% Similarity=0.179 Sum_probs=86.0
Q ss_pred eeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCCCeee-cCeeEee-eEECCCCEEcc-eee-eceEECCCc
Q 043870 353 YWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKI-EKCRVQD-SIISHGCFLRE-CSV-EHSIVGIRS 428 (526)
Q Consensus 353 ~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~-s~Ig~~~~i~~-~~v-~~s~ig~~~ 428 (526)
.|.-+.+|...+.....+....+....++|.+.+.+++.+++++.| +.+.|.+ +.||++|+|+. |.| .++.||++|
T Consensus 78 ~~i~~~~p~~~~~~~~~~~~~~~~~~~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~ 157 (357)
T 4e79_A 78 NFIIVDNPYLAFAILTHVFDKKISSTGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDC 157 (357)
T ss_dssp EEEECSCHHHHHHHHHTTSSCCCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSC
T ss_pred cEEEECCHHHHHHHHHHHhccccccCeeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence 3555677775443333333322222556666666666665555555 2333322 44444444432 222 234444444
Q ss_pred EECCCCEEeceEEECCccc-chhHHHHHHhh---------CC-------CcceEECCCCEEe-ceEEC----CCCEECCC
Q 043870 429 RLEYGVELKDTMMMGADYY-QTEAEIAALLA---------EG-------KVPVGIGRDTKIK-NCIID----KNAKIGKN 486 (526)
Q Consensus 429 ~I~~~~~i~~~v~~~~~~~-~~~~~~~~~~~---------~~-------~~~~~Ig~~~~i~-~~iI~----~~~~Ig~~ 486 (526)
.|+++|+|.+.+.+|++.. ..++ .+. .| ...+.||++|.|. +|+|+ +++.||++
T Consensus 158 ~I~~~~~I~~~~~IG~~~~I~~g~----~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IG~~~~I~~g~~~~t~Ig~~ 233 (357)
T 4e79_A 158 FIDSYVTITGSSKLRDRVRIHSST----VIGGEGFGFAPYQGKWHRIAQLGSVLIGNDVRIGSNCSIDRGALDNTILEDG 233 (357)
T ss_dssp EECTTCEECTTCEECSSCEECTTC----EESCCCCCEEEETTEEEECCCCCCEEECTTCEECTTCEECCCSSSCEEECTT
T ss_pred EECCCcEEecccEEEeEeeccCCe----EECcccCcccccCCceeeccccCcEEEcCCcEEccccEEeccccCCccccCC
Confidence 4444444433333322200 0000 000 00 0126667777775 46665 56666677
Q ss_pred cEEccCCCcCCccccCCCeEEccCc-----EEECCCCEECCCccC
Q 043870 487 VIIANKDGVEEAERPSDGFYIRSGI-----TVVLKNTTIKDGTII 526 (526)
Q Consensus 487 ~~i~~~~~v~~~~~~~~~~~I~~g~-----~~i~~~~~i~~gt~i 526 (526)
+.|.+...+..+.++++++.|+.++ +.||+++.||++++|
T Consensus 234 ~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V 278 (357)
T 4e79_A 234 VIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGV 278 (357)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred cccCCCcccCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEE
Confidence 7777666666777777777777554 367888888887764
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.2e-12 Score=130.18 Aligned_cols=173 Identities=18% Similarity=0.224 Sum_probs=82.5
Q ss_pred eeecCChhhHHHhchhhcCC-CCCcccCCCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eee-eceEECCCc
Q 043870 354 WEDIGTIKSFFDANLSLTDK-PPKFHFYDPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSV-EHSIVGIRS 428 (526)
Q Consensus 354 w~dIgt~~d~~~An~~ll~~-~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v-~~s~ig~~~ 428 (526)
++-+.+|...+.....+... +.....++|.+.+.+++.+++++.| ..+.|. ++.||++|+|+. +.| .++.||++|
T Consensus 95 ~l~~~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~ 174 (372)
T 3pmo_A 95 ALVVANPYLAYASLSHLFDRKPKAAAGIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGG 174 (372)
T ss_dssp EEECSCHHHHHHHHHGGGCCCCCCCSEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred EEEECCHHHHHHHHHHHhccccccccccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCc
Confidence 34456666554333333332 2233456666666666666666666 344443 345555555532 333 244444444
Q ss_pred EECCCCEEeceEEECCcccch-hHHHHH-----HhhCC-------CcceEECCCCEEe-ceEEC----CCCEECCCcEEc
Q 043870 429 RLEYGVELKDTMMMGADYYQT-EAEIAA-----LLAEG-------KVPVGIGRDTKIK-NCIID----KNAKIGKNVIIA 490 (526)
Q Consensus 429 ~I~~~~~i~~~v~~~~~~~~~-~~~~~~-----~~~~~-------~~~~~Ig~~~~i~-~~iI~----~~~~Ig~~~~i~ 490 (526)
.|+++++|.+.+.+|++..=. ++.|.+ .-..| ..++.||+++.|. +|.|+ .+++||+++.|.
T Consensus 175 ~I~~~~~I~~~~~IG~~v~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~ 254 (372)
T 3pmo_A 175 WLAPRVTLYHDVTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDTLIGNGVKLD 254 (372)
T ss_dssp EECTTCEECTTEEECTTCEECTTCEEEECCCCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEEC
T ss_pred ccCCCcEEEeeeEECceeeccCCcEEecCcccccccCCcceeccccCCeEECCCCEECCCcEEccCcccceEECCCCEEC
Confidence 444444444444444320000 000000 00000 0125555555554 34444 445555555555
Q ss_pred cCCCcCCccccCCCeEEccCc-----EEECCCCEECCCccC
Q 043870 491 NKDGVEEAERPSDGFYIRSGI-----TVVLKNTTIKDGTII 526 (526)
Q Consensus 491 ~~~~v~~~~~~~~~~~I~~g~-----~~i~~~~~i~~gt~i 526 (526)
+...+..+.+++++++|..++ +.||+++.||++++|
T Consensus 255 ~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V 295 (372)
T 3pmo_A 255 NQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGL 295 (372)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEE
Confidence 555555666667777666443 366777777777654
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=115.80 Aligned_cols=119 Identities=15% Similarity=0.271 Sum_probs=88.2
Q ss_pred ccCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eeee----ceEECCCcEECCCCEEec-----eEEECCccc
Q 043870 378 HFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVE----HSIVGIRSRLEYGVELKD-----TMMMGADYY 447 (526)
Q Consensus 378 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~----~s~ig~~~~I~~~~~i~~-----~v~~~~~~~ 447 (526)
.++++...+...+.+.|++.|.+ ++.||++|.|++ +.|. .++||++|.|+++|.|.. .+++|++
T Consensus 28 ~~~~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~-- 101 (191)
T 3ixc_A 28 PYAGVSPSVDSTAFIAGNARIIG----DVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKF-- 101 (191)
T ss_dssp CBTTBCCEECTTSEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTT--
T ss_pred cccCCCCEECCCCEECCCCEEeC----CcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCC--
Confidence 35556666677777777776643 466777777764 4443 459999999999999973 5566665
Q ss_pred chhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 448 QTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
+.||+++.|.+|+||++|.||++++|.+. .+++++++|++|+++ .++..|+++++
T Consensus 102 ----------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~------~~Ig~~~~Ig~gsvV-~~~~~i~~~~~ 156 (191)
T 3ixc_A 102 ----------------VTIGHSCILHACTLGNNAFVGMGSIVMDR------AVMEEGSMLAAGSLL-TRGKIVKSGEL 156 (191)
T ss_dssp ----------------CEECTTCEECSCEECTTCEECTTCEECTT------CEECTTCEECTTCEE-CTTCEECTTEE
T ss_pred ----------------CEECCCCEEECCEECCCCEECCCCEEeCC------eEECCCCEECCCCEE-CCCcCcCCCeE
Confidence 88999999999999999999999998764 466777777777544 66677777765
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=122.40 Aligned_cols=29 Identities=7% Similarity=0.014 Sum_probs=20.2
Q ss_pred ccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 498 AERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 498 ~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
..+++++++|+.+++ .||++++|++|++|
T Consensus 170 ~v~Ig~~~~IG~~~~I~~g~~IG~~~~IgagsvV 203 (273)
T 3fs8_A 170 GVTIELFAVIAARSVVLPGIHINEDALVGAGAVV 203 (273)
T ss_dssp CCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CcEECCCeEEcCCCEEcCCCEECCCCEECCCCEE
Confidence 356777788877665 56777777777764
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-11 Score=112.58 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=84.5
Q ss_pred CCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eeee----ceEECCCcEECCCCEEece----EEECCcccchhH
Q 043870 381 DPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVE----HSIVGIRSRLEYGVELKDT----MMMGADYYQTEA 451 (526)
Q Consensus 381 ~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~----~s~ig~~~~I~~~~~i~~~----v~~~~~~~~~~~ 451 (526)
+....+.+++.+.|++.+.+ ++.||++|.|++ +.+. .++||+++.|+++|.|... +++|++
T Consensus 8 ~~~~~i~~~~~I~~~a~i~g----~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~------ 77 (173)
T 1v3w_A 8 GKKPRIHPSAFVDENAVVIG----DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEY------ 77 (173)
T ss_dssp TBCCEECTTCEECTTSEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSS------
T ss_pred CCCCEECCCCEECCCCEEeC----CEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCC------
Confidence 34445566666666666643 567777777764 4553 3899999999999999853 777776
Q ss_pred HHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 452 EIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 452 ~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
+.|++++.|.+|+|+++|.||.+++|.+. .+++++++|+.++++ .++..|+++++
T Consensus 78 ------------~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~------~~Ig~~~~Ig~~s~V-~~~~~i~~~~~ 132 (173)
T 1v3w_A 78 ------------VTIGHNAMVHGAKVGNYVIIGISSVILDG------AKIGDHVIIGAGAVV-PPNKEIPDYSL 132 (173)
T ss_dssp ------------CEECTTCEEESCEECSSEEECTTCEECTT------CEECSSEEECTTCEE-CTTCEECTTEE
T ss_pred ------------CEECCCCEECCCEECCCCEECCCCEEeCC------CEECCCCEECCCCEE-CCCcEeCCCcE
Confidence 89999999999999999999999998765 456667777766544 45555665554
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-11 Score=111.89 Aligned_cols=117 Identities=21% Similarity=0.331 Sum_probs=85.4
Q ss_pred CCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eeeec----eEECCCcEECCCCEEec----eEEECCcccchh
Q 043870 380 YDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVEH----SIVGIRSRLEYGVELKD----TMMMGADYYQTE 450 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~~----s~ig~~~~I~~~~~i~~----~v~~~~~~~~~~ 450 (526)
+.+...+.+.+.+.|++.+.+ ++.||++|.|+. +.+.. ++||+++.|+++|.|.. .+++|++
T Consensus 9 ~~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~----- 79 (173)
T 1xhd_A 9 KEKKPKIASSAFIADYVTITG----DVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDD----- 79 (173)
T ss_dssp TTBCCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTT-----
T ss_pred CCCCCEECCCcEECCCCEEEC----CEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCC-----
Confidence 344445555666666665532 577888888874 55543 89999999999999983 4666665
Q ss_pred HHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 451 AEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 451 ~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
+.||.++.|.+|+|+++|.||.+++|... .+++++++|+.++++ .++..|+++++
T Consensus 80 -------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~------~~Ig~~~~Ig~~s~V-~~~~~i~~~~v 134 (173)
T 1xhd_A 80 -------------VTVGHQVILHSCHIKKDALIGMGSIILDG------AEIGEGAFIGAGSLV-SQGKKIPPNTL 134 (173)
T ss_dssp -------------CEECTTCEEESCEECTTCEECTTCEECTT------CEECTTCEECTTCEE-CTTCEECTTEE
T ss_pred -------------CEECCCCEEeCCEECCCCEEcCCCEEcCC------CEECCCCEECCCCEE-CCCcEeCCCCE
Confidence 89999999999999999999999998754 466777777777554 55566666654
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-11 Score=120.97 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=34.3
Q ss_pred CCCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eeee-c--------------eEECCCcEECCCCEEeceEE
Q 043870 380 YDPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSVE-H--------------SIVGIRSRLEYGVELKDTMM 441 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v~-~--------------s~ig~~~~I~~~~~i~~~v~ 441 (526)
++|.+.+.+.+.+++++.| +++.|. ++.||++|.|++ |.|. . ++||+++.|+++|.|...+.
T Consensus 11 I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~ 90 (273)
T 3fs8_A 11 IKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGDTI 90 (273)
T ss_dssp ECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESSCE
T ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCCCE
Confidence 3444444444444444444 234443 255556666653 3332 2 66777777776666655555
Q ss_pred ECCc
Q 043870 442 MGAD 445 (526)
Q Consensus 442 ~~~~ 445 (526)
+|++
T Consensus 91 Ig~~ 94 (273)
T 3fs8_A 91 IGDN 94 (273)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 5543
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-11 Score=112.98 Aligned_cols=116 Identities=21% Similarity=0.328 Sum_probs=86.2
Q ss_pred CCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee----eceEECCCcEECCCCEEec-----------eEEECC
Q 043870 381 DPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV----EHSIVGIRSRLEYGVELKD-----------TMMMGA 444 (526)
Q Consensus 381 ~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v----~~s~ig~~~~I~~~~~i~~-----------~v~~~~ 444 (526)
.....+...+.+.|++.+.+ ++.||++|.|++ +.| ..+.||++|.|+++|.|.. .+++|+
T Consensus 17 ~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~ 92 (189)
T 3r1w_A 17 GISPKLGERVFVDRSSVIIG----DVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGD 92 (189)
T ss_dssp TBCCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECS
T ss_pred CcCCEECCCcEECCCCEEee----eeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECC
Confidence 34445666667777776643 567777777764 444 3469999999999999977 467777
Q ss_pred cccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCc
Q 043870 445 DYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGT 524 (526)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt 524 (526)
+ +.||+++.|.+|+||++|.||.+++|... .+++++++|+.++++ .++..|++++
T Consensus 93 ~------------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~------v~Ig~~~~Ig~~s~V-~~g~~i~~~~ 147 (189)
T 3r1w_A 93 D------------------VTIGHQAMLHGCTIGNRVLIGMKSMIMDG------AIVEDEVIVAAGATV-SPGKVLESGF 147 (189)
T ss_dssp S------------------EEECTTCEEESCEECSSEEECTTCEECTT------CEECSSCEECTTCEE-CTTCEECTTE
T ss_pred C------------------CEECCCCEEeCcEECCCcEECCCCEEcCC------CEECCCCEEccCCEE-CCCCEeCCCC
Confidence 6 89999999999999999999999988754 466777777777554 6666777766
Q ss_pred c
Q 043870 525 I 525 (526)
Q Consensus 525 ~ 525 (526)
+
T Consensus 148 v 148 (189)
T 3r1w_A 148 V 148 (189)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.27 E-value=4.1e-11 Score=112.12 Aligned_cols=118 Identities=17% Similarity=0.292 Sum_probs=88.0
Q ss_pred cCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eeee----ceEECCCcEECCCCEE-----------eceEEE
Q 043870 379 FYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVE----HSIVGIRSRLEYGVEL-----------KDTMMM 442 (526)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~----~s~ig~~~~I~~~~~i-----------~~~v~~ 442 (526)
+.+....+...+.+.|++.+.+ ++.||++|+|++ +.|. .+.||++|.|+++|.| ...+++
T Consensus 11 ~~~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~I 86 (187)
T 3r3r_A 11 YKNLFPGIGQRVMIDTSSVVIG----DVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLII 86 (187)
T ss_dssp BTTBCCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEE
T ss_pred hcccCcccCCCeEECCCCEEEC----ceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEE
Confidence 3444556666777777777643 567777777764 4443 3599999999999999 356777
Q ss_pred CCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECC
Q 043870 443 GADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKD 522 (526)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~ 522 (526)
|++ +.||.++.|.+|+||++|.||.+++|... .+++++++|++++++ .++..|++
T Consensus 87 g~~------------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~------~~Ig~~~~Ig~~s~V-~~~~~i~~ 141 (187)
T 3r3r_A 87 GED------------------VTVGHKVMLHGCTIGNRVLVGMGSIVLDG------AIIEDDVMIGAGSLV-PQHKRLES 141 (187)
T ss_dssp CSS------------------CEECTTCEEESCEECSSEEECTTCEECTT------CEECSSEEECTTCEE-CTTCEECT
T ss_pred CCC------------------CEECCCCEEeCcEECCCCEECCCCEECCC------CEECCCCEECCCCEE-CCCcCcCC
Confidence 776 88999999999999999999999998654 467777888877554 66677777
Q ss_pred Ccc
Q 043870 523 GTI 525 (526)
Q Consensus 523 gt~ 525 (526)
+++
T Consensus 142 ~~v 144 (187)
T 3r3r_A 142 GYL 144 (187)
T ss_dssp TEE
T ss_pred CcE
Confidence 765
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.27 E-value=4.7e-12 Score=119.61 Aligned_cols=86 Identities=21% Similarity=0.335 Sum_probs=50.0
Q ss_pred eEEC--CCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCE
Q 043870 406 SIIS--HGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAK 482 (526)
Q Consensus 406 s~Ig--~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~ 482 (526)
+.|| ++|+|.+ +++|+.+++||++|.|...++++++ +.||++|.|. +|+|..+++
T Consensus 88 ~~Ig~~~g~~I~~----~~~I~~~~~IG~~~~I~~~~~i~~~------------------~~Ig~~~~I~~~~~i~~~~~ 145 (194)
T 3bfp_A 88 AIVEENAGILIMP----YVVINAKAKIEKGVILNTSSVIEHE------------------CVIGEFSHVSVGAKCAGNVK 145 (194)
T ss_dssp CEECTTSCCEECT----TCEECTTCEECTTCEECTTCEECTT------------------CEECTTCEECTTCEECTTCE
T ss_pred ceeCCCCCcEEcC----CCEECCCCEECCCCEECCCCEEcCC------------------CEECCCCEECCCCEECCCcE
Confidence 4566 6666654 4555555555555555555555543 5666666665 366666666
Q ss_pred ECCCcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 483 IGKNVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 483 Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
||++|.|+....+....++++++.|+.|+++
T Consensus 146 Ig~~~~Ig~~~~i~~~~~Ig~~~~Igagsvv 176 (194)
T 3bfp_A 146 IGKNCFLGINSCVLPNLSLADDSILGGGATL 176 (194)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred ECCCCEEcCCCEECCCCEECCCCEECCCCEE
Confidence 6666666655444445556666666665444
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-11 Score=114.19 Aligned_cols=125 Identities=14% Similarity=0.116 Sum_probs=71.1
Q ss_pred CCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee----eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHh
Q 043870 383 QKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV----EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALL 457 (526)
Q Consensus 383 ~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v----~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~ 457 (526)
+..|.+++.+.+.+.|.+ ++.||++|+|+. +.+ .+++||++|.|+++|.|............ -
T Consensus 12 ~v~I~~~a~I~~~a~I~g----~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~--------~ 79 (194)
T 3tv0_A 12 SVKIAPGAVVCVESEIRG----DVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDT--------E 79 (194)
T ss_dssp CEEECTTCEECTTSEEES----SEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC-------------
T ss_pred CCEECCCCEEcCCCEEeC----CCEECCCCEECCCCEEccCCCCeEECCCccccCCccccccccccccccc--------c
Confidence 344445555555555533 467777777764 444 24789999999999998654322211000 0
Q ss_pred hCCCcceEECCCCEEe------ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 458 AEGKVPVGIGRDTKIK------NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 458 ~~~~~~~~Ig~~~~i~------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
..-..++.||+++.|. ++.|+++|.||.+++|. ...++|++++|++|+++ .+++.|+++|+|
T Consensus 80 ~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~------~gv~IG~~~~IgagsvV-~~~~~Ip~~svv 147 (194)
T 3tv0_A 80 DPEPKPMIIGTNNVFEVGCYSQAMKMGDNNVIESKAYVG------RNVILTSGCIIGACCNL-NTFEVIPENTVI 147 (194)
T ss_dssp ----CCEEECSSCEECTTCEECCSEECSSCEECTTCEEC------TTEEECSSCEECTTCEE-CCCEEECTTEEE
T ss_pred cCcCCceEECCcceEecceeEeeeeecccceecceeeEC------CeEEECCCCEECCCCEE-CCCcEECCCCEE
Confidence 0011234555555554 45555555555555554 45677888888888554 677777777654
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-11 Score=114.03 Aligned_cols=27 Identities=15% Similarity=0.382 Sum_probs=12.7
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEc
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIA 490 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 490 (526)
+.|++++.|. +++|++++.||.++++.
T Consensus 58 ~~I~~~~~I~~~~~Ig~~~~ig~~~~~~ 85 (192)
T 3mqg_A 58 VKIQNNVSVYDNVFLEDDVFCGPSMVFT 85 (192)
T ss_dssp CEECTTCEECTTEEECTTCEECTTCBCC
T ss_pred cEEcCCcEEeCCCEECCCCEECCceEEe
Confidence 4444444443 34445555555444444
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-11 Score=118.93 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=21.6
Q ss_pred ECCCcEEccCCCcCCccccCCCeEEccCc-----EEECCCCEECCCccC
Q 043870 483 IGKNVIIANKDGVEEAERPSDGFYIRSGI-----TVVLKNTTIKDGTII 526 (526)
Q Consensus 483 Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~-----~~i~~~~~i~~gt~i 526 (526)
||+++.|.....+.....++++++|+.++ +.||+++.||++++|
T Consensus 111 IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V 159 (266)
T 3r0s_A 111 IGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPI 159 (266)
T ss_dssp ECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred ECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEE
Confidence 33333333333333444555555555443 255677777766654
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.8e-12 Score=128.25 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=13.8
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccCC
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANKD 493 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~ 493 (526)
+.||++|.|. +|+|.++++||++|+|+...
T Consensus 219 v~IGd~v~IG~~a~I~~gv~IG~g~vIgags 249 (316)
T 3tk8_A 219 VIIEDNCFIGARSEVVEGVIVEENSVISMGV 249 (316)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred cEECCCCEECCCCEEcCCCEECCCCEEcCCC
Confidence 4445544443 34444444444444444443
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.23 E-value=7.3e-11 Score=112.95 Aligned_cols=97 Identities=20% Similarity=0.310 Sum_probs=67.9
Q ss_pred eeEECCCCEEcc-eeee-----ceEECCCcEECCCCEEec--------------eEEECCcccchhHHHHHHhhCCCcce
Q 043870 405 DSIISHGCFLRE-CSVE-----HSIVGIRSRLEYGVELKD--------------TMMMGADYYQTEAEIAALLAEGKVPV 464 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v~-----~s~ig~~~~I~~~~~i~~--------------~v~~~~~~~~~~~~~~~~~~~~~~~~ 464 (526)
++.||++|.|++ +.|. .++||++|.|+++|.|.. .+.+|++ +
T Consensus 57 ~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~------------------v 118 (213)
T 3kwd_A 57 DVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDN------------------V 118 (213)
T ss_dssp SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTT------------------C
T ss_pred ceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCC------------------c
Confidence 366777777764 4442 478899999999998875 2555554 6
Q ss_pred EECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEE----ECCCCEECCCccC
Q 043870 465 GIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITV----VLKNTTIKDGTII 526 (526)
Q Consensus 465 ~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~----i~~~~~i~~gt~i 526 (526)
.||.++.|.. ++||++|.||++++|.+ .+++++++|++++++ |++++.|++|+++
T Consensus 119 ~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~-------~~Ig~~~~Igags~V~~~~i~~~~~v~~~~vv 178 (213)
T 3kwd_A 119 SITHMALIHGPAYIGDGCFIGFRSTVFN-------ARVGAGCVVMMHVLIQDVEIPPGKYVPSGMVI 178 (213)
T ss_dssp EECTTCEEEEEEEECTTCEECTTCEEEE-------EEECTTCEECSSCEEESCEECTTBEECTTCEE
T ss_pred EECCCcEEcCCCEECCCCEECCCCEEeC-------cEECCCCEEcCCCEECCcEeCCCCEECCCcEE
Confidence 7777777765 88888888888888864 356666666666554 5777777777754
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.7e-11 Score=118.31 Aligned_cols=56 Identities=11% Similarity=0.223 Sum_probs=28.4
Q ss_pred CCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCc
Q 043870 382 PQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGAD 445 (526)
Q Consensus 382 ~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~ 445 (526)
+...|.+++.+.|+++|.. ++.|+++|+|+. ++.||+++.|+++|.|.+.+.+|++
T Consensus 21 ~~~~I~p~a~I~~~a~ig~----~v~Ig~~~~I~~----~v~IG~~~~I~~~~~I~~~~~IG~~ 76 (283)
T 4eqy_A 21 SMSRIHPTAIIEPGAQLHE----TVEVGPYAIVGS----NVTIGARTTIGSHSVIEGHTTIGED 76 (283)
T ss_dssp --CCBCTTCEECTTCEECT----TCEECTTCEECT----TEEECTTCEECTTCEECSEEEECSS
T ss_pred CCcccCCCCEECCCCEECC----CCEECCCCEECC----CCEECCCCEECCCCEECCCcEECCC
Confidence 3344555555555555522 355555555554 5555555555555555555555543
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.1e-11 Score=117.61 Aligned_cols=13 Identities=8% Similarity=-0.189 Sum_probs=6.2
Q ss_pred EECCCCEECCCcc
Q 043870 513 VVLKNTTIKDGTI 525 (526)
Q Consensus 513 ~i~~~~~i~~gt~ 525 (526)
.||+++.||++++
T Consensus 141 ~Igd~~~Ig~~a~ 153 (259)
T 3hsq_A 141 TLGNFAFISGLVA 153 (259)
T ss_dssp EECSSCEECSSEE
T ss_pred EECCCcEEeCCCE
Confidence 3455555554443
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.21 E-value=9.7e-11 Score=115.64 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=33.5
Q ss_pred CCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCc
Q 043870 380 YDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGAD 445 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~ 445 (526)
+++.+.+.+++.+.++++|.. ++.|+++|+|+. ++.||++|.|+++|.|.+.+.+|++
T Consensus 2 I~~~~~I~p~a~I~~~a~Ig~----~v~I~~~~~I~~----~v~IG~~~~I~~~~~I~~~~~IG~~ 59 (262)
T 2qia_A 2 IDKSAFVHPTAIVEEGASIGA----NAHIGPFCIVGP----HVEIGEGTVLKSHVVVNGHTKIGRD 59 (262)
T ss_dssp BCTTCEECTTCEECTTCEECT----TCEECTTCEECT----TEEECTTCEECSSCEECSEEEECSS
T ss_pred cCCCCeECCCCEECCCCEECC----CCEECCCCEECC----CCEECCCcEECCCCEECCCcEECCC
Confidence 455566666666666655532 455566666654 5666666666666666655555554
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.8e-11 Score=111.58 Aligned_cols=110 Identities=19% Similarity=0.299 Sum_probs=61.9
Q ss_pred cCCCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eee-eceEECCCcEECCCCEEeceEEECCcccchhHHHH
Q 043870 379 FYDPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIA 454 (526)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~ 454 (526)
+++|.+.+.+.+.+++++.| +.+.|. ++.||++|.|+. +.| .+++||++|.|++++.|.+.+.++++
T Consensus 5 ~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~--------- 75 (192)
T 3mqg_A 5 TIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDD--------- 75 (192)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTT---------
T ss_pred EECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCC---------
Confidence 44555555555555555555 334443 366666666653 334 23666666666666666555555554
Q ss_pred HHhhCCCcceEECCCCEEe----------------ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE
Q 043870 455 ALLAEGKVPVGIGRDTKIK----------------NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT 512 (526)
Q Consensus 455 ~~~~~~~~~~~Ig~~~~i~----------------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~ 512 (526)
+.||.++.+. .++|+++|.||.+++|.... ++++++.|++|++
T Consensus 76 ---------~~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~------~Ig~~~~Igagsv 134 (192)
T 3mqg_A 76 ---------VFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGA------TIGRYAFVGAGAV 134 (192)
T ss_dssp ---------CEECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTTC------EECTTCEECTTCE
T ss_pred ---------CEECCceEEecccCCccccccccccCCcEECCCcEECCCCEECCCC------EECCCCEEcCCCE
Confidence 5555555553 36777777777777776542 4444455544443
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=121.50 Aligned_cols=130 Identities=18% Similarity=0.172 Sum_probs=83.3
Q ss_pred ccCCCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eee-eceEECCCcEECCCCEEeceEEECCcccchhHHH
Q 043870 378 HFYDPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEI 453 (526)
Q Consensus 378 ~~~~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~ 453 (526)
..++|.+.+.+.+.+++++.| ..+.|. ++.||++|.|+. +.| .+++||++|.|+++|.|.+.+.+|++
T Consensus 125 ~~i~~~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~-------- 196 (374)
T 2iu8_A 125 PGIHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKR-------- 196 (374)
T ss_dssp CSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTT--------
T ss_pred CccCCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCC--------
Confidence 456777777888888888888 567776 588888888874 556 56777777777777777666777765
Q ss_pred HHHhhCCCcceEECCCCEEe---------------------ceEECCCCEECCCcEEcc----------------CCCcC
Q 043870 454 AALLAEGKVPVGIGRDTKIK---------------------NCIIDKNAKIGKNVIIAN----------------KDGVE 496 (526)
Q Consensus 454 ~~~~~~~~~~~~Ig~~~~i~---------------------~~iI~~~~~Ig~~~~i~~----------------~~~v~ 496 (526)
+.|+.++.|. .++||++|.||++++|.. ...+.
T Consensus 197 ----------~~I~~~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~I~~~~~~~t~ig~~~~i~~~v~I~ 266 (374)
T 2iu8_A 197 ----------VIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIA 266 (374)
T ss_dssp ----------CEECTTCEEEEECSCEEEETTTEEEECCCCCCEEECTTCEECTTCEEEECSSSCEEECTTCEECTTCEEC
T ss_pred ----------CEECCCCEECcCCcccccccCCceeEeeeeccEEECCCCEECCCcEEccCcccceeECCCcEECCccccC
Confidence 5666666653 266666666666666542 23333
Q ss_pred CccccCCCeEEccCc-----EEECCCCEECCCcc
Q 043870 497 EAERPSDGFYIRSGI-----TVVLKNTTIKDGTI 525 (526)
Q Consensus 497 ~~~~~~~~~~I~~g~-----~~i~~~~~i~~gt~ 525 (526)
...++|++++|.+++ +.||+++.|+.++.
T Consensus 267 ~~v~IG~~~~i~~~~~v~~~~~Ig~~~~Ig~~~~ 300 (374)
T 2iu8_A 267 HQVEVGQHSMIVAQAGIAGSTKIGNHVIIGGQAG 300 (374)
T ss_dssp TTCEECTTCEECTTCEECTTCEECSSCEECTTCE
T ss_pred CccEECCCCEEccCcccCCCcEECCCeEEecCcE
Confidence 444555555554332 24555555555543
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-11 Score=123.79 Aligned_cols=35 Identities=6% Similarity=0.013 Sum_probs=17.2
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCc
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEA 498 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~ 498 (526)
+.||++|.|. +|+|.++++||++|+|+....+...
T Consensus 178 v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~ 213 (276)
T 3gos_A 178 TIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQS 213 (276)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCCEECCC
Confidence 5555555554 3555555555555555444433333
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.8e-11 Score=113.42 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=9.0
Q ss_pred ceEECCCcEECCCCEE
Q 043870 421 HSIVGIRSRLEYGVEL 436 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i 436 (526)
+++||++|.|+++|.|
T Consensus 70 ~v~IG~~~~I~~~~~I 85 (205)
T 3vbi_A 70 KVTIGSYSHIAAYTAL 85 (205)
T ss_dssp EEEECSSEEECTTCEE
T ss_pred ceEECCCCEECCCeEE
Confidence 4555555555555555
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.6e-11 Score=126.82 Aligned_cols=52 Identities=23% Similarity=0.322 Sum_probs=36.0
Q ss_pred eEECCCCEEe-ceEECC-------CCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECC
Q 043870 464 VGIGRDTKIK-NCIIDK-------NAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKD 522 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~-------~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~ 522 (526)
+.||+||.|. +|+|.. +++||++|.|+. ...+..++.|++++++ +.+++|..
T Consensus 370 ~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~------~~~i~~~v~Ig~~~~i-g~~s~v~~ 429 (456)
T 2v0h_A 370 SEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGS------DTQLVAPVKVANGATI-GAGTTITR 429 (456)
T ss_dssp EEECTTCEECTTCEEEECSSSSCCCEEECSSCEECT------TCEEEESEEECTTCEE-CTTCEECS
T ss_pred cEECCCcEECCceEEeccccccCCCcEECCCCEECC------CCEEcCCcEECCCCEE-CCCCEECC
Confidence 5777777776 465543 566666666654 4577889999999665 88887643
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-10 Score=113.70 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=23.9
Q ss_pred CEECCCcEEccCCCcCCccccCCCeEEccCc-----EEECCCCEECCCccC
Q 043870 481 AKIGKNVIIANKDGVEEAERPSDGFYIRSGI-----TVVLKNTTIKDGTII 526 (526)
Q Consensus 481 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~-----~~i~~~~~i~~gt~i 526 (526)
++||+++.|.....+.....++++++|+.++ ++||+++.||++++|
T Consensus 111 ~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V 161 (265)
T 4e6u_A 111 TKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGI 161 (265)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred eEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEE
Confidence 3333333333333344445555555555443 356777777777654
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=8.4e-11 Score=125.38 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=51.7
Q ss_pred cCeeEeeeEECCCCEEcc-eeee-ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCC--cceEECCCCEEe-
Q 043870 399 EKCRVQDSIISHGCFLRE-CSVE-HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGK--VPVGIGRDTKIK- 473 (526)
Q Consensus 399 ~~~~i~~s~Ig~~~~i~~-~~v~-~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~Ig~~~~i~- 473 (526)
.++.+.++.||++|.|+. +.|. +++||.++.|+++|+|.++++..+.. +.... .++.||+||.|.
T Consensus 319 ~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~Ig~~~~----------i~~~~~i~~~~Ig~~~~Ig~ 388 (468)
T 1hm9_A 319 TNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTK----------AGHLTYIGNCEVGSNVNFGA 388 (468)
T ss_dssp CSCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCEECTTCE----------EEEEEEEESEEECTTCEECT
T ss_pred EEEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeeeEEcCCcE----------eCCceEEccccccCCcEECC
Confidence 333444566666666664 4443 56666666666666665443322200 00000 012345555544
Q ss_pred ceEECC-------CCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEEC
Q 043870 474 NCIIDK-------NAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIK 521 (526)
Q Consensus 474 ~~iI~~-------~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~ 521 (526)
+|++.. .++||++|.|+ ..+.+..++.|+++++ |+.+++|.
T Consensus 389 ~~~i~~~~~~~~~~~~Ig~~~~Ig------~~~~i~~~v~Ig~~~~-i~~~s~v~ 436 (468)
T 1hm9_A 389 GTITVNYDGKNKYKTVIGDNVFVG------SNSTIIAPVELGDNSL-VGAGSTIT 436 (468)
T ss_dssp TCEEECBCSSCBCCEEECTTCEEC------TTCEEESSCEECTTCE-ECTTCEEC
T ss_pred CcEEecCcCccCCCcEECCCeEEC------CCCEEeCCcEECCCCE-ECCCCEEC
Confidence 233322 34444444443 4456677777777755 36666654
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.1e-11 Score=121.87 Aligned_cols=35 Identities=9% Similarity=0.063 Sum_probs=17.9
Q ss_pred ceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCC
Q 043870 463 PVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 463 ~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~ 497 (526)
|+.||++|.|. +|+|.++++||++|+|+....+..
T Consensus 202 ~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~ 237 (304)
T 3eg4_A 202 PTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGK 237 (304)
T ss_dssp CCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred CeEEcCCCEECCCCEEcCCcEECCCcEECCCCEEcC
Confidence 35555555554 355555555555555554444333
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-10 Score=113.73 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=31.8
Q ss_pred CCCCeeec-CeeEe-eeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCc
Q 043870 392 FLPPSKIE-KCRVQ-DSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGAD 445 (526)
Q Consensus 392 ~~~~~~i~-~~~i~-~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~ 445 (526)
+.|++.|+ +++|. ++.|+++|+|+. ++.||++|.|+++|.|.+.+.+|++
T Consensus 4 I~p~a~I~~~a~Ig~~~~Ig~~~~I~~----~v~IG~~~~I~~~~~I~g~~~IG~~ 55 (270)
T 1j2z_A 4 IAKTAIISPKAEINKGVEIGEFCVIGD----GVKLDEGVKLHNNVTLQGHTFVGKN 55 (270)
T ss_dssp BCTTCEECTTSEECTTCEECTTCEECT----TCEECTTCEECTTCEECSEEEECTT
T ss_pred cCCCCEECCCCEECCCCEECCCCEECC----CCEECCCCEEcCCcEEeCCeEEcCC
Confidence 44555553 33332 466666666664 7778888888888877766777765
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-10 Score=107.90 Aligned_cols=100 Identities=16% Similarity=0.323 Sum_probs=71.8
Q ss_pred EECCCCEEcc-eee-eceEECCCcEECCCCEEece---EEECCcccchhHHHHHHhhCCCcceEECCCCEEe------ce
Q 043870 407 IISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDT---MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK------NC 475 (526)
Q Consensus 407 ~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~------~~ 475 (526)
.|+++|+|.+ +.+ .++.||+++.|+++|.|..+ +.+|++ +.|+++|.|. ++
T Consensus 35 ~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~g~~ 96 (191)
T 3ixc_A 35 SVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEG------------------TNIQDNTVVHTDSMHGDT 96 (191)
T ss_dssp EECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEECC----CCE
T ss_pred EECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCC------------------CEECCCCEEeecCCcCCe
Confidence 3444444442 222 37889999999999999854 478876 8999999998 89
Q ss_pred EECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 476 IIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 476 iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
+|+++|.||.+++|.+. .+.++..++.++.|..++ +|+++++|++|++|
T Consensus 97 ~Ig~~~~Ig~~~~i~~~-~Ig~~~~Ig~~~~I~~~~-~Ig~~~~Ig~gsvV 145 (191)
T 3ixc_A 97 VIGKFVTIGHSCILHAC-TLGNNAFVGMGSIVMDRA-VMEEGSMLAAGSLL 145 (191)
T ss_dssp EECTTCEECTTCEECSC-EECTTCEECTTCEECTTC-EECTTCEECTTCEE
T ss_pred EECCCCEECCCCEEECC-EECCCCEECCCCEEeCCe-EECCCCEECCCCEE
Confidence 99999999999988763 455555555555555553 45888888887764
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.12 E-value=4.7e-10 Score=103.75 Aligned_cols=97 Identities=15% Similarity=0.306 Sum_probs=69.8
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEece---EEECCcccchhHHHHHHhhCCCcceEECCCCEEe-----ceEE
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDT---MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-----NCII 477 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~iI 477 (526)
+.|+++|.|. .++.||+++.|+++|.|... +.+|++ +.|+++|.|. +++|
T Consensus 19 ~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~v~IG~~------------------~~I~~~~~I~~~~~~~~~I 76 (173)
T 1xhd_A 19 AFIADYVTIT----GDVYVGEESSIWFNTVIRGDVSPTIIGDR------------------VNVQDQCTLHQSPQYPLIL 76 (173)
T ss_dssp CEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECCTTCCEEE
T ss_pred cEECCCCEEE----CCEEECCCcEEcCCcEEecCCCeEEECCC------------------CEECCCCEEEeCCCCCeEE
Confidence 3444444443 37889999999999999775 778876 8899999997 7899
Q ss_pred CCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 478 DKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 478 ~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
+++|.||.++.|.+. .+.+...++.++.|..++ +||+++.|++|++|
T Consensus 77 g~~~~Ig~~~~i~~~-~Ig~~~~Ig~~~~i~~~~-~Ig~~~~Ig~~s~V 123 (173)
T 1xhd_A 77 EDDVTVGHQVILHSC-HIKKDALIGMGSIILDGA-EIGEGAFIGAGSLV 123 (173)
T ss_dssp CTTCEECTTCEEESC-EECTTCEECTTCEECTTC-EECTTCEECTTCEE
T ss_pred CCCCEECCCCEEeCC-EECCCCEEcCCCEEcCCC-EECCCCEECCCCEE
Confidence 999999999888653 344555555555554443 45888888887764
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-10 Score=123.73 Aligned_cols=213 Identities=13% Similarity=0.053 Sum_probs=136.1
Q ss_pred EEEEc----CCeecccCHHHHHHHHHHc--CC---------cEEEEEEEccCCcCCCceEEEEcCCCCeeeeeccCCccc
Q 043870 216 ILILS----GDHLYRMDYMDFVQHHINS--GG---------DISVCCLPVDESRASDFGLMKIDETGRIRQFLEKPKGEN 280 (526)
Q Consensus 216 ~lil~----gD~l~~~dl~~ll~~h~~~--~a---------d~ti~~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~ 280 (526)
++|+. +|.....++.+++..|.+. ++ ..++.+..+.+.-...|+.+. .|++..+.++|...-
T Consensus 140 t~V~~~~~kpd~~~~~~l~~l~~~h~~~~~g~~~~~~~ig~~~ti~L~~l~d~li~~~~~~~---~g~i~~~~~~pg~~~ 216 (496)
T 3c8v_A 140 TLVHSNSHDPESPEEFTIRNTVAMPYANIHGSLTEGSFIGSFATVDLSTIHNSVVRYFSYVQ---TGELVGKCVEPGQIW 216 (496)
T ss_dssp CEEESCCCCTTCTTEEEEESCEECTTCEEESCCEESCEECTTCEEESCEEESCEECTTCEEE---SSEEESCEECTTEEE
T ss_pred eEEeccccCCCCccccchHHHHHHHHHhhcCCcccceEecccceeeHHHHHHHHHHHHhhhc---CCceEEeeecCCcee
Confidence 37788 5777666666666666642 21 233433334332123566652 467777777775310
Q ss_pred cccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCChhhchHhhhhcCCcEEEEEecceeeec--C
Q 043870 281 LRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDI--G 358 (526)
Q Consensus 281 ~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d~~~dil~~li~~~~V~~~~~~~~w~dI--g 358 (526)
. .+......+|.|.++.|..++.+. . ..+ ..+.|.|+ .
T Consensus 217 i-------------------~~~~~lnf~Y~f~~~~L~~~l~~~-~---------------~~n-----~~g~~~Dll~~ 256 (496)
T 3c8v_A 217 I-------------------KSGDELEFHYSFDKAILDKYISQE-A---------------GSC-----PTGVLMEFVEV 256 (496)
T ss_dssp E-------------------ECTTSEEEEEECCHHHHTTTCBCC-T---------------TSC-----CBSHHHHHHHT
T ss_pred c-------------------ccccccceEEEcCHHHHHHHHhhc-c---------------Ccc-----ccceeeehhcc
Confidence 0 122334569999998876443221 0 000 12233333 3
Q ss_pred ChhhHHHhchhh----cCCCCCcccCCCCCcccCCCCCCCCeee-cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECC
Q 043870 359 TIKSFFDANLSL----TDKPPKFHFYDPQKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEY 432 (526)
Q Consensus 359 t~~d~~~An~~l----l~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~ 432 (526)
.++++.++.... .....+-.++++.+.+.+.+.++++|.| .++.|.++.||++|.|++ |.|.+++||++|.|+.
T Consensus 257 ~~~d~~~i~~~~~~~~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~ 336 (496)
T 3c8v_A 257 RQEDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAH 336 (496)
T ss_dssp TTHHHHHHHHC--------CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEESCEECT
T ss_pred chHHHHHHhhccccccCcccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCCCEECC
Confidence 445554432211 1111223466777777777788888888 578888899999999984 7889999999999999
Q ss_pred CCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEece-----EECCCCEECCCcEEc
Q 043870 433 GVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNC-----IIDKNAKIGKNVIIA 490 (526)
Q Consensus 433 ~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~-----iI~~~~~Ig~~~~i~ 490 (526)
+|.|.+ +++|++ +.||.++.|..+ +||++|.||.++++.
T Consensus 337 ~a~I~g-v~IGd~------------------v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~ 380 (496)
T 3c8v_A 337 GGKIIN-AHLGDM------------------IFTGFNSFLQGSESSPLKIGDGCVVMPHTIID 380 (496)
T ss_dssp TCEEES-EEEEET------------------CEECTTCEEECCSSSCEEECTTCEECTTCEEE
T ss_pred CcEEcC-ceECCC------------------cEECCCCEEeCCCCcceEECCCCEECCCCEEe
Confidence 999988 555554 899999999855 899999999999987
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.8e-10 Score=114.08 Aligned_cols=68 Identities=16% Similarity=0.299 Sum_probs=49.3
Q ss_pred ccCCCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eee-eceEECCCcEECCCCEEec----eEEECCc
Q 043870 378 HFYDPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKD----TMMMGAD 445 (526)
Q Consensus 378 ~~~~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~----~v~~~~~ 445 (526)
.+++|.+.+.+++.+++++.| +.+.|. ++.||++|.|+. +.| .++.||++|.|++++.|.. .+.+|++
T Consensus 8 ~~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~ 83 (305)
T 3t57_A 8 VLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCN 83 (305)
T ss_dssp -CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSS
T ss_pred CeECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCc
Confidence 456777777777777777777 456665 588888888874 555 3788888888888888864 4556654
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-10 Score=122.35 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=25.3
Q ss_pred EECCCCEEe-ceEECC-------CCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEE
Q 043870 465 GIGRDTKIK-NCIIDK-------NAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTI 520 (526)
Q Consensus 465 ~Ig~~~~i~-~~iI~~-------~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i 520 (526)
.||++|.|. ++++.. +++||++|.|+. ...+..++.|++|+++ |.+++|
T Consensus 374 ~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~------~~~I~~gv~Ig~~~~i-gagsvV 430 (459)
T 4fce_A 374 EIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGS------DTQLVAPVTVANGATI-GAGTTV 430 (459)
T ss_dssp EECTTCEECTTCEEECBCSSCBCCEEECTTCEECT------TCEEESSEEECTTCEE-CTTCEE
T ss_pred EECCCCEECCCCEEeccccccCCCCEECCCeEEcC------CCEEcCCcEECCCCEE-CCCCEE
Confidence 455555554 243322 344444444443 3456667777777443 666655
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-10 Score=118.96 Aligned_cols=124 Identities=18% Similarity=0.134 Sum_probs=85.9
Q ss_pred CCCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHH
Q 043870 380 YDPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAAL 456 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~ 456 (526)
+.+.+.+...+.+++++.| .++.|. ++.||++|.|+. +.|.+++||+++.|+.++.|+++++ |++
T Consensus 253 I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~I-g~~----------- 320 (401)
T 2ggo_A 253 IKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVI-AED----------- 320 (401)
T ss_dssp ECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEE-CTT-----------
T ss_pred ECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEE-CCC-----------
Confidence 3444445555556666666 556665 588999999985 7788999999999999999987554 444
Q ss_pred hhCCCcceEECCCCEEec---------eEEC----------CCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCC
Q 043870 457 LAEGKVPVGIGRDTKIKN---------CIID----------KNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKN 517 (526)
Q Consensus 457 ~~~~~~~~~Ig~~~~i~~---------~iI~----------~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~ 517 (526)
+.||.++.|.+ +.++ .+++||++|.|+..+.+.+..++++++.|+.|+++ .++
T Consensus 321 -------~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv-~~~ 392 (401)
T 2ggo_A 321 -------VNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVV-NRD 392 (401)
T ss_dssp -------CEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEE-CSC
T ss_pred -------cEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCCcEECCCcEECCCCeE-ccc
Confidence 88999999862 2222 25556666666555555566788888888888666 443
Q ss_pred CEECCCcc
Q 043870 518 TTIKDGTI 525 (526)
Q Consensus 518 ~~i~~gt~ 525 (526)
|+++++
T Consensus 393 --vp~~~~ 398 (401)
T 2ggo_A 393 --VGYGEF 398 (401)
T ss_dssp --BCTTCE
T ss_pred --cCCCcE
Confidence 566654
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.2e-10 Score=104.93 Aligned_cols=97 Identities=11% Similarity=0.144 Sum_probs=67.6
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEe---ceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe---------
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELK---DTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK--------- 473 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~--------- 473 (526)
++|+++|.|++ ++.||++|.|+++|.|. +.+.+|++ +.|++++.|.
T Consensus 19 a~I~~~a~I~g----~V~IG~~~~I~~~~~I~~~~g~i~IG~~------------------~~I~~~~~I~~~~~~~~~~ 76 (194)
T 3tv0_A 19 AVVCVESEIRG----DVTIGPRTVIHPKARIIAEAGPIVIGEG------------------NLIEEQALIINAYPDNITP 76 (194)
T ss_dssp CEECTTSEEES----SEEECTTCEECTTCEEEESSSCEEECTT------------------CEECTTCEEEECCCSCC--
T ss_pred CEEcCCCEEeC----CCEECCCCEECCCCEEccCCCCeEECCC------------------ccccCCccccccccccccc
Confidence 55566666654 78888888888888885 34677775 7788888774
Q ss_pred --------ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 474 --------NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 474 --------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
+++|++++.|+.++++.+. .+.+...++.++.|..| +.||++++||+|++|
T Consensus 77 ~~~~~~~~~~~Ig~~~~i~~~~~i~~~-~Ig~~~~Ig~~~~I~~g-v~IG~~~~IgagsvV 135 (194)
T 3tv0_A 77 DTEDPEPKPMIIGTNNVFEVGCYSQAM-KMGDNNVIESKAYVGRN-VILTSGCIIGACCNL 135 (194)
T ss_dssp -------CCEEECSSCEECTTCEECCS-EECSSCEECTTCEECTT-EEECSSCEECTTCEE
T ss_pred ccccCcCCceEECCcceEecceeEeee-eecccceecceeeECCe-EEECCCCEECCCCEE
Confidence 3567777777777777643 45556666666666665 355888888888764
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.9e-10 Score=115.09 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=57.0
Q ss_pred CCCCCCeee-cCeeEeeeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEEC
Q 043870 390 PRFLPPSKI-EKCRVQDSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIG 467 (526)
Q Consensus 390 ~~~~~~~~i-~~~~i~~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig 467 (526)
+.+++.|.| +++.|.++.|++++.|+ .+.|++++|+.+|+|+.++++.+...+..+ . .+-..-+..+.|+
T Consensus 84 ~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~-----~---~~~~~~~~g~~I~ 155 (334)
T 2pig_A 84 CTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAI-----Q---GLTHEHAQILQIY 155 (334)
T ss_dssp CEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC----------------CCCEEEC
T ss_pred eeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeec-----c---eeecccCCCeEEC
Confidence 333333333 34444445555555554 344455555555555555544433333221 0 0111111226788
Q ss_pred CCCEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccC
Q 043870 468 RDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSG 510 (526)
Q Consensus 468 ~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g 510 (526)
++++|.+++|+++|+|+.+++|. ...+.....+++++.+..+
T Consensus 156 ~~a~I~~s~I~~g~~I~~~a~I~-~svI~~~a~I~~~a~V~~~ 197 (334)
T 2pig_A 156 DRATVNHSRIVHQVQLYGNATIT-HAFIEHRAEVFDFALIEGD 197 (334)
T ss_dssp TTCEEESCEEETTCEECTTCEEE-SEEECTTCEECTTCEEECC
T ss_pred CCCEEeccEEcCCCEEcCCeEEe-CcEEcCCCEECCCcEECCc
Confidence 88888888888888888887776 3445555555555555433
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.07 E-value=6.1e-10 Score=106.49 Aligned_cols=97 Identities=11% Similarity=0.057 Sum_probs=70.1
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEec----eEEECCcccchhHHHHHHhhCCCcceEECCCCEEec-------
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKD----TMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN------- 474 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~------- 474 (526)
+.|+++|.|.. ++.||++|.|+++|.|.+ .+.+|++ +.||++|.|..
T Consensus 46 ~~I~~~a~i~~----~v~IG~~~~I~~~~~I~~~~~~~v~IG~~------------------~~Ig~~~~I~~~~~~~~i 103 (213)
T 3kwd_A 46 AYVHSFSNLIG----DVRIKDYVHIAPGTSIRADEGTPFHIGSR------------------TNIQDGVVIHGLQQGRVI 103 (213)
T ss_dssp CEECTTSEEEE----SEEECTTCEECTTCEEEESSSCCEEECTT------------------CEECTTCEEEECSSCCEE
T ss_pred CEECCCCEEeC----ceEECCCCEEcCCcEEecCCCCceEECCC------------------CEECCCCEEEecCCCcee
Confidence 45556666654 789999999999999976 3788876 89999999974
Q ss_pred --------eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 475 --------CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 475 --------~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
++||++|.||.++.|.+...+.+...++.++.|.. ++||+++.||+|++|
T Consensus 104 g~~~~~~~~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~--~~Ig~~~~Igags~V 161 (213)
T 3kwd_A 104 GDDGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFN--ARVGAGCVVMMHVLI 161 (213)
T ss_dssp CTTSCEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE--EEECTTCEECSSCEE
T ss_pred ccCCcccceEECCCcEECCCcEEcCCCEECCCCEECCCCEEeC--cEECCCCEEcCCCEE
Confidence 77777787877777765444444444444444432 468999999998875
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-09 Score=102.51 Aligned_cols=100 Identities=14% Similarity=0.225 Sum_probs=73.5
Q ss_pred EECCCCEEcc-eee-eceEECCCcEECCCCEEeceE---EECCcccchhHHHHHHhhCCCcceEECCCCEE---------
Q 043870 407 IISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDTM---MMGADYYQTEAEIAALLAEGKVPVGIGRDTKI--------- 472 (526)
Q Consensus 407 ~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~v---~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i--------- 472 (526)
.|+++++|.+ +.+ .++.||+++.|+++|.|.... .+|++ +.|++++.|
T Consensus 17 ~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~~~~ 78 (187)
T 3r3r_A 17 GIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGAR------------------TNIQDGSVLHVTHKSSSN 78 (187)
T ss_dssp EECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECBCCBTTB
T ss_pred ccCCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCC------------------CEECCCCEEecCCccccC
Confidence 4455555543 333 479999999999999998754 88886 899999999
Q ss_pred ---eceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 473 ---KNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 473 ---~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
.+++||++|.||.+++|.+. .+.++..++.++.|..++ +||++++|++|++|
T Consensus 79 ~~~~~~~Ig~~~~Ig~~~~i~~~-~Ig~~~~Ig~~~~I~~~~-~Ig~~~~Ig~~s~V 133 (187)
T 3r3r_A 79 PHGNPLIIGEDVTVGHKVMLHGC-TIGNRVLVGMGSIVLDGA-IIEDDVMIGAGSLV 133 (187)
T ss_dssp C-CBCEEECSSCEECTTCEEESC-EECSSEEECTTCEECTTC-EECSSEEECTTCEE
T ss_pred CCCCCeEECCCCEECCCCEEeCc-EECCCCEECCCCEECCCC-EECCCCEECCCCEE
Confidence 57999999999999999763 444555555555554442 55888888888764
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=9.5e-10 Score=104.41 Aligned_cols=101 Identities=13% Similarity=0.064 Sum_probs=70.2
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe----ceEECCCC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK----NCIIDKNA 481 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~----~~iI~~~~ 481 (526)
+.|++++.|... .++.||+++.|+++|.|...+.+|++ +.|+.++.|. +++||++|
T Consensus 39 ~~I~~~~~i~~~--~~v~IG~~~~I~~~~~I~~~v~IG~~------------------~~I~~~~~I~~~~~~~~IG~~~ 98 (205)
T 3vbi_A 39 VLISKKASIYNP--GVISIGNNVRIDDFCILSGKVTIGSY------------------SHIAAYTALYGGEVGIEMYDFA 98 (205)
T ss_dssp EEEBTTSEEESG--GGEEECSSEEECTTCEEEEEEEECSS------------------EEECTTCEEEEEEEEEEECTTC
T ss_pred CEECCCeEEccC--CeeEECCCCEECCCCEEccceEECCC------------------CEECCCeEEEcCCccEEECCCC
Confidence 444455544310 26899999999999999988999987 8999999994 48999999
Q ss_pred EECCCcEEccCCC-------------------cCCccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 482 KIGKNVIIANKDG-------------------VEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 482 ~Ig~~~~i~~~~~-------------------v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
.||++|+|.+... .....++|++++|+.+++ .||++++|++|++|
T Consensus 99 ~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV 167 (205)
T 3vbi_A 99 NISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMV 167 (205)
T ss_dssp EECTTCEEESEECCCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEE
T ss_pred EECCCcEEEeCCCCcccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEE
Confidence 9999999942110 023445566666665544 45777777777664
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.4e-10 Score=108.45 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=56.1
Q ss_pred eEECCCCEEcc-eee-----eceEECCCcEECCCCEEe--ceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe----
Q 043870 406 SIISHGCFLRE-CSV-----EHSIVGIRSRLEYGVELK--DTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK---- 473 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v-----~~s~ig~~~~I~~~~~i~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~---- 473 (526)
+.|++++.|+. +.+ ..+.||+++.|++++.|. ..+.+|++ +.||.++.|.
T Consensus 64 v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~~v~IG~~------------------~~Ig~~~~I~~~~~ 125 (252)
T 3jqy_B 64 LIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGSKVIIGRR------------------TTIGAGFEVVTDKC 125 (252)
T ss_dssp EEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSCEEEECTT------------------CEECTTCEEECSSS
T ss_pred EEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCCEEEECCC------------------CEECCCcEEEeCCC
Confidence 55666666553 222 234555555555555553 24555554 5666666666
Q ss_pred ceEECCCCEECCCcEEccCC-------------CcCCccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 474 NCIIDKNAKIGKNVIIANKD-------------GVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 474 ~~iI~~~~~Ig~~~~i~~~~-------------~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+++||++|.||++|+|.+.+ .......++++++|+++++ +||++++||+|++|
T Consensus 126 ~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV 196 (252)
T 3jqy_B 126 NVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIV 196 (252)
T ss_dssp EEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECTTCEE
T ss_pred CeEECCCCEEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEECCCCEECCCCEE
Confidence 66777777777777776652 1223344555555554442 45666666666553
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=102.26 Aligned_cols=97 Identities=11% Similarity=0.177 Sum_probs=71.2
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEec---eEEECCcccchhHHHHHHhhCCCcceEECCCCEEece-------
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKD---TMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNC------- 475 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~------- 475 (526)
+.|++++.|. .++.||+++.|+++|.|.. .+.+|++ +.|++++.|..+
T Consensus 26 ~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~~~~~ 83 (189)
T 3r1w_A 26 VFVDRSSVII----GDVELGDDCSVWPLAVIRGDMHHIRIGAR------------------TSVQDGSVLHITHASDYNP 83 (189)
T ss_dssp CEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECBCCSSSST
T ss_pred cEECCCCEEe----eeeEECCCCEECCCCEEecCCCceEECCC------------------CEECCCCEEecCCcccCCC
Confidence 3444444443 3899999999999999984 4588887 899999999754
Q ss_pred -----EECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 476 -----IIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 476 -----iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
+||++|.||.++.|.+ ..+.++..++.++.|..++ .||++++|++|++|
T Consensus 84 ~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~v-~Ig~~~~Ig~~s~V 137 (189)
T 3r1w_A 84 GGYPLIIGDDVTIGHQAMLHG-CTIGNRVLIGMKSMIMDGA-IVEDEVIVAAGATV 137 (189)
T ss_dssp TCBCEEECSSEEECTTCEEES-CEECSSEEECTTCEECTTC-EECSSCEECTTCEE
T ss_pred CCCCeEECCCCEECCCCEEeC-cEECCCcEECCCCEEcCCC-EECCCCEEccCCEE
Confidence 9999999999999976 3444555555555554442 45888888888764
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=111.68 Aligned_cols=117 Identities=9% Similarity=0.102 Sum_probs=78.3
Q ss_pred CCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCC
Q 043870 383 QKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGK 461 (526)
Q Consensus 383 ~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~ 461 (526)
.+.+.+.+.+.+++.|.+ .+.|+++|.|++ |.|.+|+||++++|+++++|.++++.++
T Consensus 65 ~a~I~~~a~I~~~~~I~g----~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~----------------- 123 (334)
T 2pig_A 65 NAMAFAGTEITGNARITQ----PCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREE----------------- 123 (334)
T ss_dssp TCEEETTCEECTTCEEES----SCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESS-----------------
T ss_pred CeEEcCCcEECCCcEEee----eeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCC-----------------
Confidence 344444444444444432 377777777774 6677899999999999999999987776
Q ss_pred cceEECCCCEEe-ceEECC----------CCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 462 VPVGIGRDTKIK-NCIIDK----------NAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 462 ~~~~Ig~~~~i~-~~iI~~----------~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
+.|+.++.+. +|.|.. ++.|++++.|..+ .+.+.++++.++.|+ + .+|++++.|+++++
T Consensus 124 --~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~I~~~a~I~~s-~I~~g~~I~~~a~I~-~-svI~~~a~I~~~a~ 193 (334)
T 2pig_A 124 --CAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHS-RIVHQVQLYGNATIT-H-AFIEHRAEVFDFAL 193 (334)
T ss_dssp --EEECTTCEEESSCEEEC--------CCCEEECTTCEEESC-EEETTCEECTTCEEE-S-EEECTTCEECTTCE
T ss_pred --eEEecCCEEeCCEEEeecceeecccCCCeEECCCCEEecc-EEcCCCEEcCCeEEe-C-cEEcCCCEECCCcE
Confidence 6777777665 466643 4777777777653 455566666666665 3 44567777776665
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-09 Score=105.52 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=15.9
Q ss_pred CCCCcccCCCCCCCCeee-cCeeE-eeeEECCCCEEc
Q 043870 381 DPQKPIFTSPRFLPPSKI-EKCRV-QDSIISHGCFLR 415 (526)
Q Consensus 381 ~~~~~i~~~~~~~~~~~i-~~~~i-~~s~Ig~~~~i~ 415 (526)
+|.+.+.+.+.+++++.| .++.| .++.||++|.|+
T Consensus 95 ~~~a~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~ 131 (240)
T 3r8y_A 95 EPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMID 131 (240)
T ss_dssp CTTCEEBSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CCCCEECCCcEECCCCEECCCCEECCCCEECCCCEEC
Confidence 344444444444444444 33343 235555555554
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-09 Score=98.79 Aligned_cols=52 Identities=13% Similarity=0.258 Sum_probs=27.6
Q ss_pred ceEECCCcEECCCCEEece---EEECCcccchhHHHHHHhhCCCcceEECCCCEEe-----ceEECCCCEECCCcEEc
Q 043870 421 HSIVGIRSRLEYGVELKDT---MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-----NCIIDKNAKIGKNVIIA 490 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~iI~~~~~Ig~~~~i~ 490 (526)
++.||+++.|++++.|... +.+|++ +.|++++.|. +++||+++.|+.++.|.
T Consensus 28 ~v~IG~~~~I~~~~~i~~~~~~~~IG~~------------------~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~ 87 (173)
T 1v3w_A 28 DVVLEEKTSVWPSAVLRGDIEQIYVGKY------------------SNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVH 87 (173)
T ss_dssp EEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECBTTBCEEECSSCEECTTCEEE
T ss_pred CEEECCCCEECCCeEEecCCceEEECCC------------------CEECCCcEEEecCCCCeEECCCCEECCCCEEC
Confidence 4555555555555555543 444443 4555555554 35555555555555553
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-09 Score=103.73 Aligned_cols=89 Identities=16% Similarity=0.149 Sum_probs=38.9
Q ss_pred ecCChhhHHHhchhhcCCC-CCcccCCCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eee-eceEECCCcEE
Q 043870 356 DIGTIKSFFDANLSLTDKP-PKFHFYDPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSV-EHSIVGIRSRL 430 (526)
Q Consensus 356 dIgt~~d~~~An~~ll~~~-~~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v-~~s~ig~~~~I 430 (526)
=|++++...+....+.... ....++++.+.+...+.+++++.| .++.|. ++.||++|.|+. +.| ++++||++|.|
T Consensus 77 AIg~~~~R~~i~~~l~~~g~~~~~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i 156 (220)
T 4ea9_A 77 AIGDNRLRQKLGRKARDHGFSLVNAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHL 156 (220)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEECCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred ecCCHHHHHHHHHHHHhcCCCcCCcCCCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence 3555554444444443322 112344555555555555555544 233332 245555555542 333 23444444444
Q ss_pred CCCCEEeceEEECC
Q 043870 431 EYGVELKDTMMMGA 444 (526)
Q Consensus 431 ~~~~~i~~~v~~~~ 444 (526)
++++.|.+.+.+|+
T Consensus 157 ~~~~~i~~~v~Ig~ 170 (220)
T 4ea9_A 157 GPASALAGGVSVGE 170 (220)
T ss_dssp CTTCEECSSCEECT
T ss_pred CCCCEEcCCCEECC
Confidence 44444444333333
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.4e-09 Score=104.83 Aligned_cols=97 Identities=8% Similarity=0.126 Sum_probs=73.6
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEece----EEECCcccchhHHHHHHhhCCCcceEECCCCEEe--------
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDT----MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-------- 473 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-------- 473 (526)
+.|+++|.|. .++.||+++.|+++|.|.+. +.+|++ +.||++|.|.
T Consensus 66 ~~I~~~a~I~----g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~------------------~~Ig~~~~I~~~~~~~~~ 123 (247)
T 1qre_A 66 AYIDPQASVI----GEVTIGANVMVSPMASIRSDEGMPIFVGDR------------------SNVQDGVVLHALETINEE 123 (247)
T ss_dssp CEECTTCEEE----ESEEECTTCEECTTCEEEESSSCCEEECTT------------------CEECTTCEEEECCSBCTT
T ss_pred cEECCCCEEe----CCcEECCCCEECCCcEEecCCCCCEEECCC------------------CEECCCeEEEeccccccc
Confidence 4455555553 37899999999999999874 478876 8999999986
Q ss_pred ----------------ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 474 ----------------NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 474 ----------------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
+++||++|.||.+++|.+...+.+++.++.++.|.. ++||+++.|++|++|
T Consensus 124 g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~--v~Ig~~~~IgagsvV 190 (247)
T 1qre_A 124 GEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK--SKVGNNCVLEPRSAA 190 (247)
T ss_dssp SCBCGGGCEEETTEEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE--EEECTTCEECTTCEE
T ss_pred CcccccceeeccCccCceEECCCCEECCCCEEcCCcEECCCCEECCCCEEec--eEECCCCEECCCCEE
Confidence 288999999999999886545555555566665544 578999999998875
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-09 Score=102.58 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=22.9
Q ss_pred eEECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 464 VGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 464 ~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
+.||++|.|.. |.|+.+++||++|.|+..+.+....++++++.|++|+++
T Consensus 148 ~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~Ig~~~~igagsvv 198 (220)
T 4ea9_A 148 CRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVV 198 (220)
T ss_dssp CEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEE
Confidence 44444444442 444444444444444433333334455555555555443
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-09 Score=100.02 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=63.2
Q ss_pred eeecCChhhHHHhchhhcCCC-CCcccCCCCCcccCCCCCC--CCeee-cCeeEe-eeEECCCCEEcc-eee-eceEECC
Q 043870 354 WEDIGTIKSFFDANLSLTDKP-PKFHFYDPQKPIFTSPRFL--PPSKI-EKCRVQ-DSIISHGCFLRE-CSV-EHSIVGI 426 (526)
Q Consensus 354 w~dIgt~~d~~~An~~ll~~~-~~~~~~~~~~~i~~~~~~~--~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v-~~s~ig~ 426 (526)
..-++++...++....+.+.. ....+++|.+.+.+++.++ +++.| +++.|. ++.||++|.|+. +.| +++.||+
T Consensus 51 ~iaig~~~~r~~~~~~l~~~~~~~~~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~ 130 (194)
T 3bfp_A 51 FIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGE 130 (194)
T ss_dssp EECCCCHHHHHHHHHHHHTTTCCBCCEECTTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred EEEeCCHHHHHHHHHHHHHcCCccccccCCeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECC
Confidence 344555554444443333321 1224566666666666666 66666 444443 366666666653 344 3556666
Q ss_pred CcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEc
Q 043870 427 RSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIA 490 (526)
Q Consensus 427 ~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 490 (526)
++.|+++|.|.+.+.+|++ +.||.++.|. ++.|+++|.||+++++.
T Consensus 131 ~~~I~~~~~i~~~~~Ig~~------------------~~Ig~~~~i~~~~~Ig~~~~Igagsvv~ 177 (194)
T 3bfp_A 131 FSHVSVGAKCAGNVKIGKN------------------CFLGINSCVLPNLSLADDSILGGGATLV 177 (194)
T ss_dssp TCEECTTCEECTTCEECTT------------------CEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CCEECCCCEECCCcEECCC------------------CEEcCCCEECCCCEECCCCEECCCCEEc
Confidence 6666666666554544443 4555555554 35555555555555553
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.6e-09 Score=107.75 Aligned_cols=96 Identities=17% Similarity=0.323 Sum_probs=45.8
Q ss_pred CCcccCCCCCCCCeeecCeeEe-eeEECCCCEEcc-eee-eceEECCCcEECCCCEEec--------eEEECCcccchhH
Q 043870 383 QKPIFTSPRFLPPSKIEKCRVQ-DSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKD--------TMMMGADYYQTEA 451 (526)
Q Consensus 383 ~~~i~~~~~~~~~~~i~~~~i~-~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~--------~v~~~~~~~~~~~ 451 (526)
.+.+...+.+++++.|....|. ++.||++|.|.. +.| .++.||++|.|+.++.|.+ .+++|++
T Consensus 135 ~a~I~~~v~Ig~g~~I~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~------ 208 (304)
T 3eg4_A 135 NCIVRHSAYIAPNAILMPSFVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDN------ 208 (304)
T ss_dssp TCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTT------
T ss_pred CEEECCCcEECCCCEEeCCEECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCC------
Confidence 3334444444444444322221 245555555543 333 2345555555555555544 3444443
Q ss_pred HHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcC
Q 043870 452 EIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVE 496 (526)
Q Consensus 452 ~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~ 496 (526)
+.||.+|.|. +|+||++|.||++++|.....+.
T Consensus 209 ------------v~IG~~a~I~~gv~IG~~avIgagsvV~~g~~Ig 242 (304)
T 3eg4_A 209 ------------CFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIV 242 (304)
T ss_dssp ------------CEECTTCEECTTCEECTTCEECTTCEECTTCCEE
T ss_pred ------------CEECCCCEEcCCcEECCCcEECCCCEEcCCeEEC
Confidence 5566666554 45566666666665555444333
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.9e-09 Score=106.09 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=6.9
Q ss_pred eEECCCCEECCCcEEc
Q 043870 475 CIIDKNAKIGKNVIIA 490 (526)
Q Consensus 475 ~iI~~~~~Ig~~~~i~ 490 (526)
++||+||.||.+++|.
T Consensus 178 v~IGd~v~IG~~a~I~ 193 (276)
T 3gos_A 178 TIIEDNCFVGARSEVV 193 (276)
T ss_dssp CEECTTCEECTTCEEC
T ss_pred eEECCCCEECCCCEEC
Confidence 4444444444444443
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.7e-09 Score=107.02 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=11.6
Q ss_pred CCCCCCCeeecCeeEeeeEECCCCEEcc
Q 043870 389 SPRFLPPSKIEKCRVQDSIISHGCFLRE 416 (526)
Q Consensus 389 ~~~~~~~~~i~~~~i~~s~Ig~~~~i~~ 416 (526)
..++.|++.|.. ++.||++|+|..
T Consensus 145 ~~~I~p~a~I~~----~~~IG~g~~I~~ 168 (316)
T 3tk8_A 145 GFRVVPPAIARR----GSFIAKNVVLMP 168 (316)
T ss_dssp CCEECTTCEEBT----TCEECTTCEECS
T ss_pred CcEEeCCeEEeC----CcEEcCCCEECC
Confidence 344445544432 345555555554
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-08 Score=102.95 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=24.2
Q ss_pred eEECCCCEEec---------eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCE
Q 043870 464 VGIGRDTKIKN---------CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTT 519 (526)
Q Consensus 464 ~~Ig~~~~i~~---------~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~ 519 (526)
+.||.++.|.. ++||+||.||.|++| . .++|++++|+.|+++ .+++.
T Consensus 237 v~IgpGa~IgG~~~~~~~~~V~IGdnv~IGAnAtI--G------VtIGd~~iIGAGSVV-tkdt~ 292 (347)
T 3r5d_A 237 SDLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGI--G------IPLGDRNIVEAGLYI-TAGTK 292 (347)
T ss_dssp EEECTTCEECC------CCCCEECTTCEECTTCEE--C------SCBCTTCEECTTCEE-CTTCE
T ss_pred CEECCCCEEccccCCCCccceEECCCCEECCCCEE--e------eEECCCCEECCCCEE-CCCCE
Confidence 55555555542 566666666666666 1 244555555544333 44443
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-08 Score=96.57 Aligned_cols=27 Identities=7% Similarity=0.065 Sum_probs=13.2
Q ss_pred eEECCCCEEcc-eeeec----eEECCCcEECC
Q 043870 406 SIISHGCFLRE-CSVEH----SIVGIRSRLEY 432 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v~~----s~ig~~~~I~~ 432 (526)
+.||++|.|+. +.+.. +.||++|.|++
T Consensus 59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~ 90 (215)
T 2wlg_A 59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGN 90 (215)
T ss_dssp EEECTTCEEESEEEEECTTCEEEECTTCEECS
T ss_pred EEECCCCEECCCeEEEcCCceEEEcCCCEECC
Confidence 45555555554 33321 55555555554
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-08 Score=104.89 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=19.4
Q ss_pred EEEecceeeecCC--hhhHHHhchhhc
Q 043870 347 AYLFNDYWEDIGT--IKSFFDANLSLT 371 (526)
Q Consensus 347 ~~~~~~~w~dIgt--~~d~~~An~~ll 371 (526)
++....+|.|.|+ |++|......+.
T Consensus 165 g~l~~~~Wt~~G~~~~~~f~~~~~~l~ 191 (387)
T 2rij_A 165 GLLSNVAWSDDKPIELEYLRANEMRLK 191 (387)
T ss_dssp HHSCCEEEETTEEECHHHHHHHHHHHH
T ss_pred ccCceeeeccCcccCHHHHHHHHHHHH
Confidence 3345668999998 788988888776
|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-07 Score=100.03 Aligned_cols=356 Identities=13% Similarity=0.102 Sum_probs=186.0
Q ss_pred CCCceEEEEEcCCCCccccCccCCCCccceeeC-CcchhHHHHHHHHHhc----CC-cEEEEEec-cChhHHHHHhhhcc
Q 043870 89 DPKAVASIILGGGAGTRLFPLTGRRAKPAVPIG-GCYRLIDVPMSNCINS----GI-KKIYILTQ-FNSQSLNRHISRTY 161 (526)
Q Consensus 89 ~~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~-g~~pLI~~~l~~l~~~----gi-~~I~Iv~~-~~~~~l~~~l~~~~ 161 (526)
...++.+|+||||.||||+ ...||.++||. |+ ++++..++++... |. -..+|.+. ...+.+.++|.+..
T Consensus 124 ~l~kvavvlLaGGlGTRLG---~~~PK~~i~V~sgk-tflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~~ 199 (528)
T 3r3i_A 124 VLNKLVVVKLNGGLGTSMG---CKGPKSLIGVRNEN-TFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYN 199 (528)
T ss_dssp TCTTEEEEEECCCBCTTTT---CSSBGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGGT
T ss_pred hcCceEEEEeCCCCccccC---CCCCccceecCCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhcC
Confidence 3567899999999999997 67899999997 77 9999999998864 42 23455555 56667777877543
Q ss_pred cCCCCcc-cCCCeEEEEecccc-cC--------cCCCcc-ccChHHHHH--HHHHHhhhhccCCCCeEEEEcCCeec-cc
Q 043870 162 NLGDGMN-FGDGFVEVLAATQR-QG--------ESGKKW-FQGTADAVR--QFIWMFEDAKHRNIENILILSGDHLY-RM 227 (526)
Q Consensus 162 ~~~~~~~-~~~~~v~vl~~~~~-~~--------~~~~~~-~~Gt~~al~--~~~~~i~~~~~~~~e~~lil~gD~l~-~~ 227 (526)
.++..+. |....+..+..... .- .....| |.|.++-.. .....+++...+..+.+.+.+.|.+. ..
T Consensus 200 ~fg~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~v 279 (528)
T 3r3i_A 200 HCRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATV 279 (528)
T ss_dssp TSSCCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCC
T ss_pred ccCCCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCccccc
Confidence 3332111 11111111111000 00 001122 345543222 22234555445788999999999954 34
Q ss_pred CHHHHHHHHHHc----CCcEEEEEEEccCCcCCCceEEEEcCCC--CeeeeeccCCccccccccccccccccchhhhcCC
Q 043870 228 DYMDFVQHHINS----GGDISVCCLPVDESRASDFGLMKIDETG--RIRQFLEKPKGENLRSMQIDTTALGLSAQEARNF 301 (526)
Q Consensus 228 dl~~ll~~h~~~----~ad~ti~~~~~~~~~~~~~g~v~~d~~g--~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~ 301 (526)
|. .++..+..+ ++++.+-+.+...+. ..-|++.. .+| +++++.+-|...... .++ ...
T Consensus 280 Dp-~~Lg~~~~~~~~~~~d~~~kVv~Kt~~d-ek~Gvl~~-~dGk~~vvEyseip~e~~~~----~~g---------~~~ 343 (528)
T 3r3i_A 280 DL-YILNHLMNPPNGKRCEFVMEVTNKTRAD-VKGGTLTQ-YEGKLRLVEIAQVPKAHVDE----FKS---------VSK 343 (528)
T ss_dssp CH-HHHHHHSSCSSSCCCSEEEEECCCCTTC-CSSCEEEC-SSSSCEEECTTSSCGGGTTT----SSC---------SSS
T ss_pred CH-HHHHHHHhcccccCCcEEEEEeEccccC-CcccEEEE-ECCeEEEEEecCCChhHhhc----cCC---------ccc
Confidence 43 355555555 788777665443321 22355443 344 456666655432110 000 012
Q ss_pred CceeeeeEEEEcHHHHHHHHHhhCCCC-------------CChh-hchHhhhhcC-CcEEEEEe-cceeeecCChhhHHH
Q 043870 302 PYIASMGIYLFKTEVLLKVLRWHYPEA-------------NDFG-SEVIPMATKD-FNVQAYLF-NDYWEDIGTIKSFFD 365 (526)
Q Consensus 302 ~~l~~~Giyif~~~~l~~ll~~~~~~~-------------~d~~-~dil~~li~~-~~V~~~~~-~~~w~dIgt~~d~~~ 365 (526)
-.+.|+...+|+-+.+.++++...... +-+. +..+-++++. .+..++.. ...+..+.+..|++.
T Consensus 344 f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~~~viqlEt~igd~i~~f~~~~~i~VpR~rF~PvKn~sdLll 423 (528)
T 3r3i_A 344 FKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSFENSLGINVPRSRFLPVKTTSDLLL 423 (528)
T ss_dssp CCCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSSSCEEEEEBCSTTCSTTSSSCCCEECCGGGCCBCCSHHHHHH
T ss_pred CCeEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccCCCCCEEEeHHHHHHHHHhccCcEEEEEehHHcccccchHHHHH
Confidence 346899999999999998887631110 0010 1111222221 11222222 234888999999876
Q ss_pred hchhhcCCCCCcccCCCCCccc--CCCCCCCCeeecCeeEee--eEECCCCEEcceeeeceEECCCcEECCCCEEeceEE
Q 043870 366 ANLSLTDKPPKFHFYDPQKPIF--TSPRFLPPSKIEKCRVQD--SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMM 441 (526)
Q Consensus 366 An~~ll~~~~~~~~~~~~~~i~--~~~~~~~~~~i~~~~i~~--s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~ 441 (526)
..-.+-......-...|...+. +...+++. +. +|.+ ..+.+---|. ...+-+|-.++..|.+++++++|+
T Consensus 424 ~~Sdly~l~~g~l~~~~~r~~~~~P~v~L~~~--~~--~v~~f~~rf~~iP~l~--~~~~LtV~Gdv~fg~~v~l~G~v~ 497 (528)
T 3r3i_A 424 VMSNLYSLNAGSLTMSEKREFPTVPLVKLGSS--FT--KVQDYLRRFESIPDML--ELDHLTVSGDVTFGKNVSLKGTVI 497 (528)
T ss_dssp HHSTTSEEETTEEECCSSCSSCCCCEEEECTT--SC--SHHHHHHHCSSCCEEE--EEEEEEEESEEECCTTCEEEEEEE
T ss_pred HhcceeEeeCCeEEecccccCCCCCEEEeCcc--cC--cHHHHHHhCCCCCCcc--cCCEEEEecceEECCCcEEEEEEE
Confidence 5543321111111112211111 11122222 10 0111 1111111111 124567777888899999999999
Q ss_pred ECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEEC
Q 043870 442 MGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIG 484 (526)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig 484 (526)
+-++ ...|+.|-+|+.+.|++|-.|.+|-
T Consensus 498 i~~~--------------~g~~~~ip~g~~len~~v~g~~~~~ 526 (528)
T 3r3i_A 498 IIAN--------------HGDRIDIPPGAVLENKIVSGNLRIL 526 (528)
T ss_dssp EECC--------------TTCEEECCTTCEEEEEEEC------
T ss_pred EEcC--------------CCCceecCCCCEEeccEEecccccc
Confidence 8653 2356899999999999998887763
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.1e-08 Score=97.84 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=6.3
Q ss_pred eEECCCCEECCCcEE
Q 043870 475 CIIDKNAKIGKNVII 489 (526)
Q Consensus 475 ~iI~~~~~Ig~~~~i 489 (526)
++||+||.||.|++|
T Consensus 234 V~IGDnv~IGanAtI 248 (332)
T 3fsy_A 234 ISIGKRCLLGANSGL 248 (332)
T ss_dssp CEECTTCEECTTCEE
T ss_pred eEECCCCEECCCCEE
Confidence 344444444444444
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=7.3e-09 Score=103.25 Aligned_cols=29 Identities=14% Similarity=0.353 Sum_probs=13.5
Q ss_pred cceEECCCCEEe-ceEECCCCEECCCcEEccC
Q 043870 462 VPVGIGRDTKIK-NCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 462 ~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 492 (526)
.|+.||++|.|. ||+| +++||++|+|+..
T Consensus 232 ~~V~IGDnv~IGanAtI--gVtIGd~~iIGAG 261 (332)
T 3fsy_A 232 HVISIGKRCLLGANSGL--GISLGDDCVVEAG 261 (332)
T ss_dssp CBCEECTTCEECTTCEE--CSCBCSSCEECTT
T ss_pred cceEECCCCEECCCCEE--eeEECCCCEECCC
Confidence 344455544444 3444 4444444444443
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-08 Score=97.86 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=23.1
Q ss_pred eEECCCCEEcc-eee---eceEECCCcEECCCCEEec---eEEECCc
Q 043870 406 SIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKD---TMMMGAD 445 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~---~v~~~~~ 445 (526)
+.||++|.|.+ +.+ .+++||+++.|+++|.|.. .+.+|++
T Consensus 86 v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~ 132 (252)
T 3jqy_B 86 VRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHD 132 (252)
T ss_dssp EEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTT
T ss_pred EEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCC
Confidence 45666666653 333 2466666666666666654 4555554
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-07 Score=89.33 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=52.9
Q ss_pred eeEECCCCEEcc-eee---eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCC---CcceEECCCCEEe-ceE
Q 043870 405 DSIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEG---KVPVGIGRDTKIK-NCI 476 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~Ig~~~~i~-~~i 476 (526)
++.||++|+|+. |.+ ..++||++|.|+++|.|.......+. .. ...+ ..|+.||++|.|. +|+
T Consensus 76 ~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~-~~--------~~~~~~~~~~v~IG~~v~IG~~~~ 146 (195)
T 3nz2_A 76 TIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDY-RR--------RQAWETICKPIVIEDDVWIGGNVV 146 (195)
T ss_dssp TEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSSG-GG--------TTTCCCEECCEEECTTCEECTTCE
T ss_pred CeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCccc-cc--------ccccceecCCeEECCCCEEcCCCE
Confidence 355666666663 444 23589999999999998776533321 00 0011 1247778887776 577
Q ss_pred ECCCCEECCCcEEccCCCcCC
Q 043870 477 IDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 477 I~~~~~Ig~~~~i~~~~~v~~ 497 (526)
|.++++||++++|+....|..
T Consensus 147 I~~gv~IG~~~vIgagsvV~~ 167 (195)
T 3nz2_A 147 INQGVTIGARSVVAANSVVNQ 167 (195)
T ss_dssp ECTTCEECTTCEECTTCEECS
T ss_pred ECCCCEECCCCEECCCCEEcc
Confidence 777777777777776665543
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.4e-08 Score=106.44 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=67.7
Q ss_pred CCCcccCCCCCCCCeeecC-----------eeEeeeEECCCCEEcc-eee-eceEECCCcEECCCCEEeceEEECCcccc
Q 043870 382 PQKPIFTSPRFLPPSKIEK-----------CRVQDSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQ 448 (526)
Q Consensus 382 ~~~~i~~~~~~~~~~~i~~-----------~~i~~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~ 448 (526)
....+...+.+++++.+.+ ..+.++.++.+|.+++ +.+ .+++|+++++||.+|+++++++..+.-+.
T Consensus 300 g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik~s~Ig~gskI~ 379 (501)
T 3st8_A 300 GRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVP 379 (501)
T ss_dssp TTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEEESCEECTTCEEE
T ss_pred CccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCCeEEEccceecCCcEEe
Confidence 3444555666666665532 2334455666666664 333 35666666666555555554442211000
Q ss_pred hhHHHHHHhhCCCcceEECCCCEEe-ceEEC-------CCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEE
Q 043870 449 TEAEIAALLAEGKVPVGIGRDTKIK-NCIID-------KNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTI 520 (526)
Q Consensus 449 ~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~-------~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i 520 (526)
-.+ .- .-+.||+||.|. +|++. +.+.||++|.|+. .+.+-.++.|++++.+ +.+++|
T Consensus 380 ~~~-----~i---~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~------~~~l~~~v~Ig~~~~i-~ags~v 444 (501)
T 3st8_A 380 HLT-----YV---GDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGS------DTMFVAPVTIGDGAYT-GAGTVV 444 (501)
T ss_dssp ESC-----EE---ESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECT------TCEEESSEEECTTCEE-CTTCEE
T ss_pred ccc-----ee---cCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECC------CCEEcCCcEECCCCEE-CCCCEE
Confidence 000 00 005677777776 35552 2466677777653 3456789999999664 888876
Q ss_pred C
Q 043870 521 K 521 (526)
Q Consensus 521 ~ 521 (526)
-
T Consensus 445 ~ 445 (501)
T 3st8_A 445 R 445 (501)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1e-07 Score=91.15 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=64.0
Q ss_pred CCCCCCeee-cCeeEee----eEECCCCEEcceee-----eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhC
Q 043870 390 PRFLPPSKI-EKCRVQD----SIISHGCFLRECSV-----EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAE 459 (526)
Q Consensus 390 ~~~~~~~~i-~~~~i~~----s~Ig~~~~i~~~~v-----~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~ 459 (526)
+.+++.+.| .++.+.. +.||++|.|+++++ .+++||++|.|+++|.|.++- +..++.... .. ...
T Consensus 59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~--~h~~~~~~~--~~-~~~ 133 (215)
T 2wlg_A 59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTD--MHPIYSLEN--GE-RIN 133 (215)
T ss_dssp EEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCC--SSCEEETTT--CB-BCC
T ss_pred EEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCC--Ccccccccc--cc-ccc
Confidence 456666666 3455543 89999999998666 578999999999999998641 000000000 00 000
Q ss_pred CCcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCC
Q 043870 460 GKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 460 ~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~ 497 (526)
-..|+.||++|.|. +|+|.++++||++++|+....+..
T Consensus 134 ~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~ 172 (215)
T 2wlg_A 134 HGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYK 172 (215)
T ss_dssp CCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEECS
T ss_pred CCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEcC
Confidence 11247777777776 477777777777777766655543
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.69 E-value=4.1e-08 Score=92.88 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=59.2
Q ss_pred CCCCCCCeeecCeeEeeeEECCCCEEcc-eee---eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCC---C
Q 043870 389 SPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEG---K 461 (526)
Q Consensus 389 ~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~---~ 461 (526)
.+.+.+|+.+.-. .++.||++|+|+. |.| ..++||++|.|+++|.|..+....+. .....+ .
T Consensus 60 ~~~i~~~~~~~~g--~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~---------~~~~~~~~~~ 128 (199)
T 3ftt_A 60 NVSISIPFDTDYG--WNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNF---------HHRNEGFEKA 128 (199)
T ss_dssp SEEECSSEEESSS--TTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSSH---------HHHHTTEEEE
T ss_pred CeEEeCCEEEEec--CCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCcc---------ccccccceec
Confidence 4455556555210 1355666666653 444 23699999999999999665422210 001111 1
Q ss_pred cceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCC
Q 043870 462 VPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 462 ~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~ 497 (526)
.|+.||++|.|. +|+|.++++||++++|+....|..
T Consensus 129 ~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~ 165 (199)
T 3ftt_A 129 GPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTK 165 (199)
T ss_dssp CCEEECSSEEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred CCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEECc
Confidence 347788888885 577777777777777777665554
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2e-08 Score=101.24 Aligned_cols=19 Identities=5% Similarity=-0.022 Sum_probs=10.2
Q ss_pred cceeeecCChhhHHHhchhhcCC
Q 043870 351 NDYWEDIGTIKSFFDANLSLTDK 373 (526)
Q Consensus 351 ~~~w~dIgt~~d~~~An~~ll~~ 373 (526)
.|+|. ...|..|+..+...
T Consensus 128 pG~~a----l~~yRlah~L~~~~ 146 (313)
T 3q1x_A 128 PGFQA----VIVYRIAHVLYECG 146 (313)
T ss_dssp HHHHH----HHHHHHHHHHHHTT
T ss_pred cCHHH----HHHHHHHHHHHHcC
Confidence 45554 55555666555443
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.7e-08 Score=91.60 Aligned_cols=100 Identities=20% Similarity=0.194 Sum_probs=60.0
Q ss_pred cCCCCCCCCeeecCeeEeeeEECCCCEEcc-eeee---ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCC--
Q 043870 387 FTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVE---HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEG-- 460 (526)
Q Consensus 387 ~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~---~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~-- 460 (526)
...+.+.|++.++-. .++.||++|+|+. |.+. ...||++|.|+++|.|......... .....+
T Consensus 60 g~~~~I~~~~~~~~g--~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~---------~~~~~~~~ 128 (188)
T 3srt_A 60 GKQINVEQNIRCDYG--YNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDA---------QLRNSGIE 128 (188)
T ss_dssp CSCEEECSCEEESSS--TTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSH---------HHHHTTEE
T ss_pred CCCCEEcCCEEEEeC--CCeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCch---------hhccccce
Confidence 344556666665210 2466777777763 4443 3589999999999999654322110 011111
Q ss_pred -CcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCC
Q 043870 461 -KVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 461 -~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~ 497 (526)
..|+.||++|.|. +|+|.++++||++|+|+....+..
T Consensus 129 ~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~ 167 (188)
T 3srt_A 129 YGSPVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTK 167 (188)
T ss_dssp EECCEEECSSCEECTTCEECTTCEECSSEEECTTCEECS
T ss_pred ECCCcEECCCcEEcCCCEECCCcEECCCCEECCCCEECc
Confidence 1357788887776 577777777777777776655543
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-07 Score=89.46 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=12.4
Q ss_pred ceEECCCcEECCCCEEece--EEECCc
Q 043870 421 HSIVGIRSRLEYGVELKDT--MMMGAD 445 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~--v~~~~~ 445 (526)
++.||+++.|+.+|.|.++ +.+|++
T Consensus 74 ~~~IG~~~~I~~~~~i~~~~~v~IG~~ 100 (199)
T 3ftt_A 74 NVKLGKNVYVNTNCYFMDGGQITIGDN 100 (199)
T ss_dssp TEEECSSEEECTTEEEECSSCEEECSS
T ss_pred CcEECCCeEECCCeEEecCCEEEECCC
Confidence 4455555555555555333 455554
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-07 Score=88.25 Aligned_cols=100 Identities=19% Similarity=0.214 Sum_probs=62.5
Q ss_pred cCCCCCCCCeeecCeeEeeeEECCCCEEcc-eeee---ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCC--
Q 043870 387 FTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVE---HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEG-- 460 (526)
Q Consensus 387 ~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~---~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~-- 460 (526)
...+.+.||+.+.- -.++.||++|+|+. |.+. .++||++|.|+++|.|.......+. .....|
T Consensus 59 g~~~~I~~~~~~~~--g~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~---------~~~~~~~~ 127 (203)
T 1krr_A 59 GENAWVEPPVYFSY--GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHH---------ELRKNGEM 127 (203)
T ss_dssp CSSCEECSCEEESC--STTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSST---------TTCTTCCB
T ss_pred CCCcEEcCCeEEEe--CCCeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccch---------hhcccCce
Confidence 34555666654421 02467888888874 5553 3789999999999998754321100 000111
Q ss_pred -CcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCC
Q 043870 461 -KVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 461 -~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~ 497 (526)
..|+.||++|.|. +|+|.++++||++++|+..+.|..
T Consensus 128 ~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~ 166 (203)
T 1krr_A 128 YSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTK 166 (203)
T ss_dssp EECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred eCCCcEECCCeEECCCCEEeCCeEECCCCEECCCCEECC
Confidence 1357888888887 578888888888888877665554
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.6e-07 Score=88.00 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=57.4
Q ss_pred CCCCCCCeeecCeeEeeeEECCCCEEcc-eeee---ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCC---C
Q 043870 389 SPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVE---HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEG---K 461 (526)
Q Consensus 389 ~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~---~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~---~ 461 (526)
.+.+.||+.+.-. .++.||++|+|+. |.+. .+.||++|.|+++|.|......++. .....+ .
T Consensus 64 ~~~I~~~~~~~~g--~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~---------~~~~~~~~~~ 132 (190)
T 3hjj_A 64 KAQINPDFRCDYG--YNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHP---------VERNSGKEYG 132 (190)
T ss_dssp CCEECSSCEESSS--TTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSH---------HHHTSSEEEE
T ss_pred CcEECCCEEEEeC--CceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCch---------hhcccccccc
Confidence 3445555554100 1355566666653 3342 5689999999999999766543321 011111 1
Q ss_pred cceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCC
Q 043870 462 VPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 462 ~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~ 497 (526)
.|+.||++|.|. +|+|.++++||++|+|+....+..
T Consensus 133 ~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~ 169 (190)
T 3hjj_A 133 KPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTK 169 (190)
T ss_dssp CCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred CCeEECCCCEECCCCEECCCCEECCCCEECCCCEECc
Confidence 347777777776 577777777777777766655543
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.5e-06 Score=88.18 Aligned_cols=348 Identities=12% Similarity=0.099 Sum_probs=193.6
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceee-CCcchhHHHHHHHHHhc----CC-cEEEEEec-cChhHHHHHhhhcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPI-GGCYRLIDVPMSNCINS----GI-KKIYILTQ-FNSQSLNRHISRTYNL 163 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV-~g~~pLI~~~l~~l~~~----gi-~~I~Iv~~-~~~~~l~~~l~~~~~~ 163 (526)
+++.+|+||||.||||+ ...||.++|| .|+ ++++..++++... +. -..+|.+. ...+.+.++|.+.-.|
T Consensus 75 ~kvavvlLaGGlGTRLG---~~~pKg~~~v~sgk-sflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~~~F 150 (484)
T 3gue_A 75 RQAVVLKLNGGLGTGMG---LNGPKSLLQVKNGQ-TFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYPTL 150 (484)
T ss_dssp TTEEEEEEECCCCGGGT---CSSCGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGCHHH
T ss_pred hhcEEEEEcCCcccccC---CCCCceeeecCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhCccc
Confidence 46899999999999998 6789999999 666 9999999988753 32 24666666 4555778888754223
Q ss_pred CC---C-cccCCCeEEEEecccc-----cCcCCCcc-ccChHHHHHHH--HHHhhhhccCCCCeEEEEcCCeecccCHHH
Q 043870 164 GD---G-MNFGDGFVEVLAATQR-----QGESGKKW-FQGTADAVRQF--IWMFEDAKHRNIENILILSGDHLYRMDYMD 231 (526)
Q Consensus 164 ~~---~-~~~~~~~v~vl~~~~~-----~~~~~~~~-~~Gt~~al~~~--~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ 231 (526)
+. . .-|....+..+..... +......| |.|.++-.... ...+++...+..+.+.+.+.|.+...-=..
T Consensus 151 gl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~ 230 (484)
T 3gue_A 151 YEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVR 230 (484)
T ss_dssp HTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHH
T ss_pred CCCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHH
Confidence 21 1 1222333333322111 00001123 35665433332 234555445788999999999976554356
Q ss_pred HHHHHHHcCCcEEEEEEEccCCcCCCceEEEEc---------CCC--CeeeeeccCCccccccccccccccccchhhhcC
Q 043870 232 FVQHHINSGGDISVCCLPVDESRASDFGLMKID---------ETG--RIRQFLEKPKGENLRSMQIDTTALGLSAQEARN 300 (526)
Q Consensus 232 ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d---------~~g--~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~ 300 (526)
++-.+.++++++.+-+.+....+. .=|++... .+| +|.++.+-|..... .+ ... .
T Consensus 231 ~lG~~~~~~~d~~~kvv~Kt~~de-kgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~-~f-----------~~~-~ 296 (484)
T 3gue_A 231 LLDYMHEKQLGFLMEVCRRTESDK-KGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDED-SF-----------QNI-A 296 (484)
T ss_dssp HHHHHHHTTCSEEEEEEECCTTCC-SSEEEEEEC--------CCCEEEEEEGGGSCGGGHH-HH-----------TCT-T
T ss_pred HHHHHHhcCCCEEEEEEECCCCCC-ceeEEEEEccccccccCCCCCEEEEEeccCCHHHHh-hh-----------cCC-C
Confidence 777888899999888777654322 34544332 245 36666665553210 00 000 0
Q ss_pred CCceeeeeEEEEcHHHHHHHHHhhC--CCCC-------------Ch-----hhchHhhhhc-CCcEEEEEec-ceeeecC
Q 043870 301 FPYIASMGIYLFKTEVLLKVLRWHY--PEAN-------------DF-----GSEVIPMATK-DFNVQAYLFN-DYWEDIG 358 (526)
Q Consensus 301 ~~~l~~~Giyif~~~~l~~ll~~~~--~~~~-------------d~-----~~dil~~li~-~~~V~~~~~~-~~w~dIg 358 (526)
...+.+++-.++.-..+.++++... .... +. .+.++-++++ -.+..++... ..+..+.
T Consensus 297 g~~~FNtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~~~~~~ieV~R~rF~PvK 376 (484)
T 3gue_A 297 KHCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLFDRSEAVVVPRERFAPVK 376 (484)
T ss_dssp TSCEEEEEEEEEEHHHHHHHHHHTTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTSSSEEEEECCGGGCCCCS
T ss_pred CceEeEeeeEEEEHHHHHHHHHhccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhCCccEEEEEChhhccccc
Confidence 2235588999999888878887631 1000 00 0112222222 1234444433 5678888
Q ss_pred ChhhHHHhchhhcCCCCCcccC-CCCCcccCCCCCCCCeeecC---eeEee--eEECCCC-EEcceeeeceEECCCcEEC
Q 043870 359 TIKSFFDANLSLTDKPPKFHFY-DPQKPIFTSPRFLPPSKIEK---CRVQD--SIISHGC-FLRECSVEHSIVGIRSRLE 431 (526)
Q Consensus 359 t~~d~~~An~~ll~~~~~~~~~-~~~~~i~~~~~~~~~~~i~~---~~i~~--s~Ig~~~-~i~~~~v~~s~ig~~~~I~ 431 (526)
+..|++...-.+........+. +|.. .. ..|-+.++. .+|.+ ..+.+|. -|.+ ..+-+|-..+..|
T Consensus 377 n~sdLl~~~Sdly~l~~~~~l~~~~~~-~~----~~P~v~L~~~~~~~v~~f~~rf~~giPsl~~--~~~L~V~Gdv~fg 449 (484)
T 3gue_A 377 TCSDLLALRSDAYQVTEDQRLVLCEER-NG----KPPAIDLDGEHYKMIDGFEKLVKGGVPSLRQ--CTSLTVRGLVEFG 449 (484)
T ss_dssp SHHHHHHHHSTTEEECTTSCEEECGGG-TT----CCCEEEECTTTSSSHHHHHHHHTTCCCBCTT--EEEEEEESSEEEC
T ss_pred cchHHHHHhhhceeccCCceEEecccc-CC----CCCeEEECchhcCcHHHHHHhcCCCCCChhh--CCEEEEecceEEC
Confidence 8888887765553322111111 1111 00 112222311 11111 2222221 1111 2356777788889
Q ss_pred CCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEE
Q 043870 432 YGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCII 477 (526)
Q Consensus 432 ~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI 477 (526)
.++++++++++.+. ...|+.|.+|+.+.|++|
T Consensus 450 ~~v~l~G~v~i~~~--------------~g~~~~ip~g~~l~~~~~ 481 (484)
T 3gue_A 450 ADVSVRGNVVIKNL--------------KEEPLIIGSGRVLDNEVV 481 (484)
T ss_dssp TTCEEEEEEEEEEC--------------SSSCEEECTTCEEESCEE
T ss_pred CCcEEEEEEEEEcC--------------CCCeeecCCCCEecceec
Confidence 99999999988752 235688999999988766
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.1e-07 Score=87.14 Aligned_cols=69 Identities=26% Similarity=0.307 Sum_probs=42.6
Q ss_pred ceEECCCcEECCCCEEec--eEEECCcccchhHHHHHHhhCCCcceEECCCCEE-------------------eceEECC
Q 043870 421 HSIVGIRSRLEYGVELKD--TMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKI-------------------KNCIIDK 479 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-------------------~~~iI~~ 479 (526)
++.||+++.|+.+|.|.+ .+.+|++ +.||.+|.| ..++||+
T Consensus 76 ~~~IG~~~~i~~~~~i~~~~~i~IG~~------------------~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~ 137 (188)
T 3srt_A 76 NIHVGENFFANYDCIFLDVCKIEIGDN------------------VMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGD 137 (188)
T ss_dssp TEEECTTEEECTTEEEECSSCEEECSS------------------CEECTTCEEECEECCSSHHHHHTTEEEECCEEECS
T ss_pred CeEECCcccccCceEEecCCceEECCe------------------eEECCCcEEeeCCccCchhhccccceECCCcEECC
Confidence 567777777777777755 4566765 778888877 2355555
Q ss_pred CCEECCCcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 480 NAKIGKNVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 480 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
||.||.+++|... .++|+++.|++|+++
T Consensus 138 ~v~IG~~~~I~~g------v~IG~~~vIgagsvV 165 (188)
T 3srt_A 138 NVWIGGGVIITPG------ITIGDNVVIGAGSVV 165 (188)
T ss_dssp SCEECTTCEECTT------CEECSSEEECTTCEE
T ss_pred CcEEcCCCEECCC------cEECCCCEECCCCEE
Confidence 5555555555433 355555555555443
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.64 E-value=9.4e-08 Score=95.04 Aligned_cols=78 Identities=22% Similarity=0.247 Sum_probs=36.2
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEEC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIG 484 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig 484 (526)
+.||++|+|+.. ..++||++++||++|.|..++.+++.. ...+++++.||+||.|. +|+|..+++||
T Consensus 171 a~IG~~v~I~hg--~gvvIG~~~~IGd~v~I~~gvtIg~~~----------~~~~~r~~~IGd~v~IGaga~Il~gv~IG 238 (287)
T 3mc4_A 171 ARLGSGLFLDHA--TGLVVGETAVVEDNVSILHGVTLGGTG----------KSSGDRHPKIRQGVLIGAGAKILGNIQVG 238 (287)
T ss_dssp CEECSSCEEESC--TTCEECTTCEECSSCEEETTCEEEC---------------CCCSCEECTTCEECTTCEEESSCEEC
T ss_pred CEECCCeEEccC--CCeEECCCeEECCCCEEcCCCEEcCCc----------ccCCCcCCEECCCCEECCCCEECCCcEEC
Confidence 344555555410 134555555555555555544444321 11334455666666665 35555555555
Q ss_pred CCcEEccCCCc
Q 043870 485 KNVIIANKDGV 495 (526)
Q Consensus 485 ~~~~i~~~~~v 495 (526)
++|+|+....|
T Consensus 239 ~~a~IGagsvV 249 (287)
T 3mc4_A 239 QCSKIAAGSVV 249 (287)
T ss_dssp TTCEECTTCEE
T ss_pred CCCEECCCCEE
Confidence 55555444433
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.64 E-value=6.2e-08 Score=97.25 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=55.1
Q ss_pred CCCcccCCCCCCCCeeec-CeeEe-eeEECCCCEEcceeeeceEECCCcEECCCCEEece--------EEECCcccchhH
Q 043870 382 PQKPIFTSPRFLPPSKIE-KCRVQ-DSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDT--------MMMGADYYQTEA 451 (526)
Q Consensus 382 ~~~~i~~~~~~~~~~~i~-~~~i~-~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~--------v~~~~~~~~~~~ 451 (526)
|.+.+...+.+++++.|. .+.|. ++.||++|.|.......++||++|.|++||.|... +.+|++
T Consensus 189 P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~igv~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdn------ 262 (347)
T 3r5d_A 189 DTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSGGGNIVISVGEG------ 262 (347)
T ss_dssp SGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTTCEECTTEEECTTCEECC------CCCCEECTT------
T ss_pred CcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEeEEECCCCEECCCCEEccccCCCCccceEECCC------
Confidence 333344444444444442 22222 35566666665422234778888888888888664 555554
Q ss_pred HHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcC
Q 043870 452 EIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVE 496 (526)
Q Consensus 452 ~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~ 496 (526)
+.||.|+.| ++.||++|.||++++|.....++
T Consensus 263 ------------v~IGAnAtI-GVtIGd~~iIGAGSVVtkdt~I~ 294 (347)
T 3r5d_A 263 ------------CLIGANAGI-GIPLGDRNIVEAGLYITAGTKVA 294 (347)
T ss_dssp ------------CEECTTCEE-CSCBCTTCEECTTCEECTTCEEE
T ss_pred ------------CEECCCCEE-eeEECCCCEECCCCEECCCCEEE
Confidence 666666666 66677777777777776655443
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.2e-08 Score=94.24 Aligned_cols=33 Identities=36% Similarity=0.462 Sum_probs=19.3
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccCCCcC
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVE 496 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~ 496 (526)
+.||++|.|. +|+|.++++||++|+|+..+.|.
T Consensus 120 v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~ 153 (220)
T 4hur_A 120 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVT 153 (220)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred eEECCCcEECCCCEEeCCCEECCCCEEcCCCEEc
Confidence 5666666665 46666666666666665554444
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.6e-08 Score=96.47 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=8.3
Q ss_pred ceEECCCcEECCCCEEece
Q 043870 421 HSIVGIRSRLEYGVELKDT 439 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~ 439 (526)
+++||++|.|+.+|+|.+.
T Consensus 216 ~~~IG~~v~I~~gvtIg~~ 234 (310)
T 3f1x_A 216 TSIIGNNVKLYQGVTLGAK 234 (310)
T ss_dssp TCEECSSCEEETTCEEECC
T ss_pred ceEEcCCCEECCCCEECCC
Confidence 3444444444444444433
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.6e-08 Score=92.24 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=11.9
Q ss_pred ceEECCCcEECCCCEEe--ceEEECCc
Q 043870 421 HSIVGIRSRLEYGVELK--DTMMMGAD 445 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~--~~v~~~~~ 445 (526)
++.||+++.|+.+|.|. ..+.+|++
T Consensus 76 ~v~IG~~~~I~~~~~i~~~~~i~IG~~ 102 (195)
T 3nz2_A 76 TIRIGDHTFINMNVVMLDGAPITIGDH 102 (195)
T ss_dssp TEEECTTCEECTTEEEECSSCEEECTT
T ss_pred CeEECCCcEECcCCEEecCceEEECCC
Confidence 44555555555555553 22445544
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-07 Score=89.95 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=19.1
Q ss_pred ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 474 NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 474 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
+++||++|.||.+++|.+. .++|++++|++|+++
T Consensus 119 ~v~IG~~v~IG~~a~I~~g------v~IG~gavIgagsvV 152 (220)
T 4hur_A 119 DIEIGNDVWIGRDVTIMPG------VKIGDGAIIAAEAVV 152 (220)
T ss_dssp CEEECSSCEECTTCEECTT------CEECTTCEECTTCEE
T ss_pred CeEECCCcEECCCCEEeCC------CEECCCCEEcCCCEE
Confidence 4666666666666666544 344555555555443
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-07 Score=87.57 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=23.3
Q ss_pred ceEECCCcEECCCCEEec--eEEECCcccchhHHHHHHhhCCCcceEECCCCEE
Q 043870 421 HSIVGIRSRLEYGVELKD--TMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKI 472 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i 472 (526)
++.||+++.|+++|.|.+ .+.+|++ +.||.+|.|
T Consensus 78 ~v~IG~~~~I~~~~~i~~~~~v~IG~~------------------~~Ig~~~~I 113 (190)
T 3hjj_A 78 NIHVGKSFFANFNCVILDVCEVRIGDH------------------CMFAPGVHI 113 (190)
T ss_dssp TEEECTTCEECTTCEEECSSCEEECTT------------------CEECTTCEE
T ss_pred ceEECCceeeCCCeEEEeCCCeEECCc------------------eEEcCCcEE
Confidence 567777777777777764 5566665 667777776
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.2e-07 Score=85.71 Aligned_cols=84 Identities=20% Similarity=0.259 Sum_probs=50.8
Q ss_pred eeEECCCCEEcc-eee---eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCC---CcceEECCCCEEe-ceE
Q 043870 405 DSIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEG---KVPVGIGRDTKIK-NCI 476 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~Ig~~~~i~-~~i 476 (526)
++.||++|+|+. |.+ .++.||++|.|+++|.|........ ... ...+ ..|+.||++|.|. +|+
T Consensus 74 ~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~----~~~-----~~~~~~~~~~v~IGd~v~IG~~~~ 144 (185)
T 2p2o_A 74 NIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLD----PHE-----RNSGLEYGKPVVIGHNVWIGGRAV 144 (185)
T ss_dssp TEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSS----HHH-----HHTCCBEECCEEECSSCEECTTCE
T ss_pred CEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCC----hhh-----cccCccccCCeEEcCCeEECCCCE
Confidence 355666666653 444 4689999999999999965431110 000 0111 1247777777776 477
Q ss_pred ECCCCEECCCcEEccCCCcCC
Q 043870 477 IDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 477 I~~~~~Ig~~~~i~~~~~v~~ 497 (526)
|.++++||++++|+..+.+..
T Consensus 145 I~~gv~IG~~~vIgagsvV~~ 165 (185)
T 2p2o_A 145 INPGVTIGDNAVIASGAVVTK 165 (185)
T ss_dssp ECTTCEECTTCEECTTCEECS
T ss_pred ECCCCEECCCCEECCCCEECC
Confidence 777777777777766655443
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-07 Score=90.96 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=24.0
Q ss_pred CeEE--EEcCCeecccCHHHHHHHHHHcC
Q 043870 214 ENIL--ILSGDHLYRMDYMDFVQHHINSG 240 (526)
Q Consensus 214 e~~l--il~gD~l~~~dl~~ll~~h~~~~ 240 (526)
|++| ++++|++...++.+++..|...+
T Consensus 20 EP~L~~~l~~~IL~~~~l~~aLa~~la~k 48 (267)
T 1ssq_A 20 EPMLASFFHSTILKHQNLGGALSYLLANK 48 (267)
T ss_dssp CHHHHHHHHHHTTTSSSHHHHHHHHHHHH
T ss_pred CCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 8899 99999999999999999987654
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.53 E-value=9.9e-08 Score=98.30 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=19.2
Q ss_pred eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEE
Q 043870 475 CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTI 520 (526)
Q Consensus 475 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i 520 (526)
++||++|.||.+++ ...++|+++.|++|+++ .+++.+
T Consensus 291 VvIGdnv~IGagAv--------~GV~IGdgavIGAGsVV-t~dv~i 327 (387)
T 2rij_A 291 ISVGKACLLGANSV--------TGIPLGDNCIVDAGIAV-LEGTKF 327 (387)
T ss_dssp CEECTTCEECTTCE--------ECSCBCTTCEECTTCEE-CTTCEE
T ss_pred eEEeCCCEECCCCc--------CCcEECCCCEECCCCEE-CCCcee
Confidence 55666666666655 22345555555555433 444443
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-07 Score=88.26 Aligned_cols=25 Identities=12% Similarity=0.333 Sum_probs=13.4
Q ss_pred ceEECCCcEECCCCEEece--EEECCc
Q 043870 421 HSIVGIRSRLEYGVELKDT--MMMGAD 445 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~--v~~~~~ 445 (526)
++.||+++.|+.+|.|.+. +.+|++
T Consensus 75 ~i~IG~~~~I~~~~~i~~~~~i~IG~~ 101 (203)
T 1krr_A 75 NIHIGRNFYANFNLTIVDDYTVTIGDN 101 (203)
T ss_dssp TEEECSSCEECSCEEEECSSCEEECSS
T ss_pred CeEECCeeEECCccEEecccceEECCC
Confidence 4555555555555555442 455554
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.52 E-value=5.1e-07 Score=84.12 Aligned_cols=84 Identities=24% Similarity=0.331 Sum_probs=50.9
Q ss_pred eeEECCCCEEcc-eee---eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCC---CcceEECCCCEEe-ceE
Q 043870 405 DSIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEG---KVPVGIGRDTKIK-NCI 476 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~Ig~~~~i~-~~i 476 (526)
+..||++|+|+. +.+ ..+.||++|.|+++|.|.....- +. .+. -..+ ..|+.||++|.|. +|+
T Consensus 72 ~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~---~~-~~~-----~~~~~~~~~~v~IG~~v~Ig~~a~ 142 (182)
T 1ocx_A 72 NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHP---ID-PVA-----RNSGAELGKPVTIGNNVWIGGRAV 142 (182)
T ss_dssp TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECC---SS-HHH-----HTTTCBEECCEEECTTCEECTTCE
T ss_pred CEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeCCCc---cC-hhh-----cccCccccCCeEEeCCeEECCCCE
Confidence 355666666653 444 35789999999999999653210 00 000 0111 1357788888876 577
Q ss_pred ECCCCEECCCcEEccCCCcCC
Q 043870 477 IDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 477 I~~~~~Ig~~~~i~~~~~v~~ 497 (526)
|.++++||++++|+..+.+..
T Consensus 143 I~~gv~IG~~~vIgagsvV~~ 163 (182)
T 1ocx_A 143 INPGVTIGDNVVVASGAVVTK 163 (182)
T ss_dssp ECTTCEECTTCEECTTCEECS
T ss_pred ECCCcEECCCCEECCCCEECC
Confidence 777777777777776655443
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-07 Score=98.19 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=37.7
Q ss_pred eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEcc
Q 043870 417 CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIAN 491 (526)
Q Consensus 417 ~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 491 (526)
+.+.++.||++|.| .++.|.++++ |++ +.||++|.|.+|+|+++|.||.+++|.+
T Consensus 320 ~~i~~~~ig~~~~I-~~~~i~~~~i-g~~------------------~~I~~~~~i~~~~i~~~~~i~~~~~i~~ 374 (420)
T 3brk_X 320 GSAVSSVVSGDCII-SGAALNRSLL-FTG------------------VRANSYSRLENAVVLPSVKIGRHAQLSN 374 (420)
T ss_dssp CEEESCEECSSCEE-ESCEEESCEE-CTT------------------CEECTTCEEEEEEECTTCEECTTCEEEE
T ss_pred cEecCCEECCCCEE-cCCEEeCcEE-cCC------------------CEECCCCEEcceEEcCCCEECCCCEEec
Confidence 33456777777777 6777766444 333 6777777777777777777777777764
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-07 Score=93.08 Aligned_cols=78 Identities=21% Similarity=0.298 Sum_probs=54.6
Q ss_pred CCCCCCCeeecCeeEeeeEEC--CCCEEcceeeeceEECCCcEECCCCEEece--------EEECCcccchhHHHHHHhh
Q 043870 389 SPRFLPPSKIEKCRVQDSIIS--HGCFLRECSVEHSIVGIRSRLEYGVELKDT--------MMMGADYYQTEAEIAALLA 458 (526)
Q Consensus 389 ~~~~~~~~~i~~~~i~~s~Ig--~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~--------v~~~~~~~~~~~~~~~~~~ 458 (526)
...++|.++|.. ++.|+ .+++|++ +++||++|.|+.+++|+++ +++|++
T Consensus 164 gi~I~p~a~IG~----~v~I~hg~gvvIG~----~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~------------- 222 (287)
T 3mc4_A 164 QTDIHPAARLGS----GLFLDHATGLVVGE----TAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQG------------- 222 (287)
T ss_dssp CCEECTTCEECS----SCEEESCTTCEECT----TCEECSSCEEETTCEEEC-----CCCSCEECTT-------------
T ss_pred CeEECCCCEECC----CeEEccCCCeEECC----CeEECCCCEEcCCCEEcCCcccCCCcCCEECCC-------------
Confidence 344555555532 23333 4555655 5666777777777777664 677776
Q ss_pred CCCcceEECCCCEEe-ceEECCCCEECCCcEEccC
Q 043870 459 EGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 459 ~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 492 (526)
|.||.|++|. +++||+||+||+++++...
T Consensus 223 -----v~IGaga~Il~gv~IG~~a~IGagsvV~kd 252 (287)
T 3mc4_A 223 -----VLIGAGAKILGNIQVGQCSKIAAGSVVLKS 252 (287)
T ss_dssp -----CEECTTCEEESSCEECTTCEECTTCEECSC
T ss_pred -----CEECCCCEECCCcEECCCCEECCCCEEccc
Confidence 8999999998 5999999999999999875
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-07 Score=100.28 Aligned_cols=100 Identities=18% Similarity=0.242 Sum_probs=75.4
Q ss_pred CCCCCCCeeecCeeEeeeEECCCCEEcc-eeeeceEECCC-------------------cEECCCCEEeceEEECCcccc
Q 043870 389 SPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVEHSIVGIR-------------------SRLEYGVELKDTMMMGADYYQ 448 (526)
Q Consensus 389 ~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~-------------------~~I~~~~~i~~~v~~~~~~~~ 448 (526)
.+.++++|.|..+.+.++.||++|.|++ +.|.++++..+ +.||++|.|.++ ++|++
T Consensus 330 ~~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~-~Ig~~--- 405 (451)
T 1yp2_A 330 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRA-IIDKN--- 405 (451)
T ss_dssp EEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESE-EECTT---
T ss_pred CeEECCCCEEcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEecc-EeCCC---
Confidence 4667888888667788899999999985 77877777666 999999999874 45544
Q ss_pred hhHHHHHHhhCCCcceEECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE
Q 043870 449 TEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT 512 (526)
Q Consensus 449 ~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~ 512 (526)
+.||+|+.|.+ +.+.++.+||++|.|+... .++|++++|++|++
T Consensus 406 ---------------~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~-----v~Ig~~a~i~agsv 450 (451)
T 1yp2_A 406 ---------------ARIGDNVKIINKDNVQEAARETDGYFIKSGI-----VTVIKDALIPSGII 450 (451)
T ss_dssp ---------------CEECTTCEECCSSCCSCEEEGGGTEEEETTE-----EEECTTCEECTTCB
T ss_pred ---------------cEECCCCEEeCCcccccCceeCCCEEEcCCE-----EEECCCcEECCCcc
Confidence 89999999986 4665555788888886543 56677777766654
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.47 E-value=6.7e-07 Score=89.02 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=24.2
Q ss_pred CeEE--EEcCCeecccCHHHHHHHHHHcC
Q 043870 214 ENIL--ILSGDHLYRMDYMDFVQHHINSG 240 (526)
Q Consensus 214 e~~l--il~gD~l~~~dl~~ll~~h~~~~ 240 (526)
|++| ++++|++...++.+++..|...+
T Consensus 40 EP~L~~~l~~~IL~~~~l~~aLa~~La~k 68 (289)
T 1t3d_A 40 EPMLASFYHATLLKHENLGSALSYMLANK 68 (289)
T ss_dssp CGGGHHHHHHHTTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 8999 99999999999999999987654
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.4e-07 Score=95.05 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=6.2
Q ss_pred eEECCCCEECCCcEE
Q 043870 475 CIIDKNAKIGKNVII 489 (526)
Q Consensus 475 ~iI~~~~~Ig~~~~i 489 (526)
++||+||.||+|+++
T Consensus 242 v~IG~~a~IGagsvV 256 (313)
T 3q1x_A 242 IIVGSHVRIGANCWI 256 (313)
T ss_dssp CEECSSEEECTTCEE
T ss_pred cEECCCCEECCCCEE
Confidence 444444444444444
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.46 E-value=3.1e-07 Score=85.80 Aligned_cols=69 Identities=23% Similarity=0.254 Sum_probs=38.1
Q ss_pred ceEECCCcEECCCCEEe--ceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-------------------ceEECC
Q 043870 421 HSIVGIRSRLEYGVELK--DTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-------------------NCIIDK 479 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-------------------~~iI~~ 479 (526)
++.||+++.|+.+|.|. ..+.+|++ +.||.+|.|. .++||+
T Consensus 74 ~v~IG~~~~i~~~~~i~~~~~i~IG~~------------------v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd 135 (185)
T 2p2o_A 74 NIHVGENFFMNFDGVILDVCEVRIGDH------------------CFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGH 135 (185)
T ss_dssp TEEECTTEEECSSEEEECSSCEEECTT------------------CEECTTCEEECEECCSSHHHHHTCCBEECCEEECS
T ss_pred CEEECCeeEEcCCeEEEeccceEECCC------------------cEEeCCCEEEcCCCcCChhhcccCccccCCeEEcC
Confidence 45556666666666654 34555554 6666666663 244555
Q ss_pred CCEECCCcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 480 NAKIGKNVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 480 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
||.||.+|+|. ...++|++++|++|+++
T Consensus 136 ~v~IG~~~~I~------~gv~IG~~~vIgagsvV 163 (185)
T 2p2o_A 136 NVWIGGRAVIN------PGVTIGDNAVIASGAVV 163 (185)
T ss_dssp SCEECTTCEEC------TTCEECTTCEECTTCEE
T ss_pred CeEECCCCEEC------CCCEECCCCEECCCCEE
Confidence 55555555544 33456666666666554
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.4e-07 Score=92.13 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=16.0
Q ss_pred ceEECCCcEECCCCEEeceEEECCc
Q 043870 421 HSIVGIRSRLEYGVELKDTMMMGAD 445 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~v~~~~~ 445 (526)
+++||+++.||++|.|...+.+|+.
T Consensus 210 gvvIG~~~~IG~~v~I~~gvtIg~~ 234 (310)
T 3f1x_A 210 GVVIGATSIIGNNVKLYQGVTLGAK 234 (310)
T ss_dssp TCEECTTCEECSSCEEETTCEEECC
T ss_pred CeEECCceEEcCCCEECCCCEECCC
Confidence 5666666666666666666666553
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.39 E-value=4.9e-07 Score=84.28 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=39.1
Q ss_pred ceEECCCcEECCCCEEe--ceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-------------------ceEECC
Q 043870 421 HSIVGIRSRLEYGVELK--DTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-------------------NCIIDK 479 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-------------------~~iI~~ 479 (526)
++.||+++.|+.+|.|. ..+.+|++ +.||.+|.|. +++||+
T Consensus 72 ~v~IG~~~~I~~~~~i~~~~~i~IG~~------------------v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~ 133 (182)
T 1ocx_A 72 NIFLGNNFFANFDCVMLDVCPIRIGDN------------------CMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGN 133 (182)
T ss_dssp TEEECSSEEECSSEEEECSSCEEECTT------------------CEECTTCEEECEECCSSHHHHTTTCBEECCEEECT
T ss_pred CEEECCCcEEeCCeEEEeccceEEcCC------------------cEEeCCcEEEeCCCccChhhcccCccccCCeEEeC
Confidence 45666666666666664 34566654 6666666663 244444
Q ss_pred CCEECCCcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 480 NAKIGKNVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 480 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
+|.||.+++|. ...++|++++|++|+++
T Consensus 134 ~v~Ig~~a~I~------~gv~IG~~~vIgagsvV 161 (182)
T 1ocx_A 134 NVWIGGRAVIN------PGVTIGDNVVVASGAVV 161 (182)
T ss_dssp TCEECTTCEEC------TTCEECTTCEECTTCEE
T ss_pred CeEECCCCEEC------CCcEECCCCEECCCCEE
Confidence 44444444443 33456666666666554
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=8.1e-07 Score=87.60 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=10.6
Q ss_pred ceEECCCcEECCCCEEece
Q 043870 421 HSIVGIRSRLEYGVELKDT 439 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~ 439 (526)
+++||++|.|+.+++|+++
T Consensus 163 ~~~IG~~v~I~~gvtig~~ 181 (267)
T 1ssq_A 163 TSVIENDVSILQGVTLGGT 181 (267)
T ss_dssp TCEECTTCEECTTCEEECC
T ss_pred eeEECCCCEEcCCcEECCC
Confidence 4555555555555555543
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-06 Score=87.40 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=9.7
Q ss_pred ceEECCCcEECCCCEEec
Q 043870 421 HSIVGIRSRLEYGVELKD 438 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~ 438 (526)
+++||++|.|+.+|+|++
T Consensus 183 ~~~IG~~v~I~~gvtLg~ 200 (289)
T 1t3d_A 183 TAVIENDVSILQSVTLGG 200 (289)
T ss_dssp TCEECSSCEECTTCEEEC
T ss_pred CcEECCCCEEcCCcEECC
Confidence 455555555555555544
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.19 E-value=2e-06 Score=82.50 Aligned_cols=34 Identities=35% Similarity=0.441 Sum_probs=18.4
Q ss_pred ceEECCCCEEe-ceEECCCCEECCCcEEccCCCcC
Q 043870 463 PVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVE 496 (526)
Q Consensus 463 ~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~ 496 (526)
++.||++|.|. +|+|..+++||++++|+....+.
T Consensus 118 ~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~ 152 (219)
T 4e8l_A 118 DIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVT 152 (219)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CcEECCCeEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 35566655555 35555555555555555544443
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.17 E-value=9.1e-06 Score=77.33 Aligned_cols=34 Identities=35% Similarity=0.435 Sum_probs=21.9
Q ss_pred ceEECCCCEEe-ceEECCCCEECCCcEEccCCCcC
Q 043870 463 PVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVE 496 (526)
Q Consensus 463 ~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~ 496 (526)
++.||++|.|. +|+|.++++||++|+|+..+.|.
T Consensus 111 ~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~ 145 (212)
T 3eev_A 111 DTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVT 145 (212)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CeEECCCCEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 36677777766 46666666666666666665554
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.8e-06 Score=80.92 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=22.2
Q ss_pred ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 474 NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 474 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
+++||++|.||.+++|... .++|+++.|++|++|
T Consensus 111 ~v~IG~~v~IG~~a~I~~g------v~IG~~~iIgagsvV 144 (212)
T 3eev_A 111 DTIIGHDVWIGTEAMIMPG------VKIGHGAIIASRSVV 144 (212)
T ss_dssp CEEECSSCEECTTCEECTT------CEECTTCEECTTCEE
T ss_pred CeEECCCCEECCCCEEcCC------CEECCCCEECCCCEE
Confidence 4677777777777776644 456666777766554
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=8.5e-06 Score=77.53 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=12.5
Q ss_pred ceEECCCcEECCCCEE
Q 043870 421 HSIVGIRSRLEYGVEL 436 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i 436 (526)
.++||++|.|+++|+|
T Consensus 60 ~v~IG~~~~Ig~gv~I 75 (209)
T 1mr7_A 60 KLKIGKFCSIGPGVTI 75 (209)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred CEEECCCCEEcCCCEE
Confidence 5778888888888876
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.5e-05 Score=76.37 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=24.1
Q ss_pred eceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 473 KNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 473 ~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
.+++||++|.||.+++|... .++|+++.|++|+++
T Consensus 117 g~v~Igd~v~IG~~a~I~~g------v~IG~~~~IgagsvV 151 (219)
T 4e8l_A 117 GDIEIGNDVWIGRDVTIMPG------VKIGDGAIIAAEAVV 151 (219)
T ss_dssp CCEEECSSCEECTTCEECTT------CEECTTCEECTTCEE
T ss_pred CCcEECCCeEECCCCEEcCC------CEECCCCEECCCCEE
Confidence 35778888888888877654 356666777766554
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=1.3e-05 Score=76.22 Aligned_cols=21 Identities=5% Similarity=0.072 Sum_probs=13.4
Q ss_pred eEECCCcEECCCCEEeceEEE
Q 043870 422 SIVGIRSRLEYGVELKDTMMM 442 (526)
Q Consensus 422 s~ig~~~~I~~~~~i~~~v~~ 442 (526)
+.+++.+.||++|.|...+.+
T Consensus 55 ~~i~~~v~IG~~~~Ig~gv~I 75 (209)
T 1mr7_A 55 PILNDKLKIGKFCSIGPGVTI 75 (209)
T ss_dssp GGGCCCEEECSSCEECTTCEE
T ss_pred cccCCCEEECCCCEEcCCCEE
Confidence 344566777777777766643
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=7e-05 Score=71.30 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=22.5
Q ss_pred ceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCC
Q 043870 463 PVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 463 ~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~ 497 (526)
|+.||++|.|. +|+|.++++||++++|+....+..
T Consensus 110 ~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~ 145 (212)
T 1xat_A 110 DTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTG 145 (212)
T ss_dssp CEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred CeEECCCCEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 56777777776 466666666666666666655543
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00042 Score=75.12 Aligned_cols=222 Identities=15% Similarity=0.155 Sum_probs=125.9
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeC---CcchhHHHHHHHHHhc-CC-cEEEEEec-cChhHHHHHhhhcccCC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIG---GCYRLIDVPMSNCINS-GI-KKIYILTQ-FNSQSLNRHISRTYNLG 164 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~---g~~pLI~~~l~~l~~~-gi-~~I~Iv~~-~~~~~l~~~l~~~~~~~ 164 (526)
+++..|+||||.||||+ ...||.++|++ |+ +++++.++++.+. |. -.++|.+. ...+.+.++|.+ |++.
T Consensus 113 ~kvavvllaGGlGTRLG---~~~pK~~lpv~~~s~k-s~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~-fgl~ 187 (630)
T 3ogz_A 113 CKTVFVLVAGGLGERLG---YSSIKVSLPVETATNT-TYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRE-LQLE 187 (630)
T ss_dssp GGEEEEEECCCEEGGGT---EEEEGGGSBSCTTTCC-BHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHH-TTCC
T ss_pred hhceEEEecCCcccccC---CCCCcccceecCCCCC-cHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHH-hCCC
Confidence 46899999999999998 66899999997 88 9999999999853 42 24566665 555678888876 5443
Q ss_pred CC-cc-cCCCeEEEEecccc--c-CcC-CCcc-ccChHHHHHHHHH--------------------HhhhhccCCCCeEE
Q 043870 165 DG-MN-FGDGFVEVLAATQR--Q-GES-GKKW-FQGTADAVRQFIW--------------------MFEDAKHRNIENIL 217 (526)
Q Consensus 165 ~~-~~-~~~~~v~vl~~~~~--~-~~~-~~~~-~~Gt~~al~~~~~--------------------~i~~~~~~~~e~~l 217 (526)
.. +. |..+.+..+..... . .+. .-.| |.|.++-...... .+++...+..+.+.
T Consensus 188 ~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~ 267 (630)
T 3ogz_A 188 VPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIV 267 (630)
T ss_dssp CTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEE
T ss_pred cccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEE
Confidence 21 11 11222222210000 0 000 1122 3566554433322 45554457889999
Q ss_pred EEcCCe-ecccCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEE--cCCCCe-----eeeeccCCcccccccccccc
Q 043870 218 ILSGDH-LYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKI--DETGRI-----RQFLEKPKGENLRSMQIDTT 289 (526)
Q Consensus 218 il~gD~-l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~--d~~g~V-----~~~~eKp~~~~~~~~~~~~~ 289 (526)
+.+.|. +...---.++-.+.++++++.+-+.+... ...-|.+.. ..+|+. ++|.|=+....... .-+..
T Consensus 268 v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p--~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~~~-~~~g~ 344 (630)
T 3ogz_A 268 FIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVP--KEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALN-KDGGD 344 (630)
T ss_dssp EECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCCS--SCSSCEEEEEESSTTSCCEEEEECHHHHHHHHHHC-------
T ss_pred EEccCCccccccCHHHhHHHHhcCCCEEEEEEECCC--CcceeeEEEEecCCCceeeeeEEEeccCCHhHhhcc-CCCcc
Confidence 999999 44444445777888899998887776432 234565544 245655 33333221100000 00000
Q ss_pred ccccchhhhcCCCceeeeeEEEEcHHHHHHHHHh
Q 043870 290 ALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 290 ~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
.+ . .....+.+..|+...+|+-+.+.+.++.
T Consensus 345 ~~--~-~~~~~~~f~GNtNnl~~~L~a~~~~l~~ 375 (630)
T 3ogz_A 345 EV--S-DPTGFSPFPGSVNTLVFKLSSYVDRLRE 375 (630)
T ss_dssp ---------CCCSSCEEEEEEEEEHHHHHHHHHH
T ss_pred cc--c-cccccccccccceeeeEEHHHHHHHHHh
Confidence 00 0 0001134456999999999866666654
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=3.4e-05 Score=73.48 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=28.1
Q ss_pred EECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 465 GIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 465 ~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
.+++++.+. .++||++|.||.+++|... .++|+++.|+.|+++
T Consensus 100 ~i~~~~~~~~~v~IG~~v~IG~~a~I~~g------v~Ig~~~~IgagsvV 143 (212)
T 1xat_A 100 GAVNGYQPAGDTLIGHEVWIGTEAMFMPG------VRVGHGAIIGSRALV 143 (212)
T ss_dssp GCCCCCCCCCCEEECTTCEECTTCEECTT------CEECTTCEECTTCEE
T ss_pred ccccCceecCCeEECCCCEECCCCEEeCC------CEECCCCEECCCCEE
Confidence 345566554 4788888888888888755 355666666666554
|
| >2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0019 Score=60.81 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=71.3
Q ss_pred ceEEEEEc--CCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEE-EEEeccChhHHHHHhhhcccCCCCcc
Q 043870 92 AVASIILG--GGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKI-YILTQFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 92 ~~~aIILA--aG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I-~Iv~~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
.|.+||++ +..-|||.|. ..+......++ ||++|+++.+..++++++ ++++++... . .+ +
T Consensus 3 ~~~~vip~k~g~~KtRL~~~---l~~~~~~~l~~-~ll~~vl~~l~~~~~~~v~vvv~~~~~~------~-~~-~----- 65 (211)
T 2i5e_A 3 AMRAVIPYKKAGAKSRLSPV---LSLQEREEFVE-LMLNQVISSLKGAGIEQVDILSPSVYGL------E-EM-T----- 65 (211)
T ss_dssp CCEEEEECCCTTTTGGGTTT---SCHHHHHHHHH-HHHHHHHHHHHHTTCSEEEEEESSCTTC------S-SC-C-----
T ss_pred ceEEEEEeCCCCCccccCcc---CCHHHHHHHHH-HHHHHHHHHHHHcCCceEEEEEcCcHHH------H-hh-c-----
Confidence 47899999 7788888731 12222335678 999999999999999999 898876431 1 11 1
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHH
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQ 234 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~ 234 (526)
+ +.++... .|..++++.+...+. +.++++.||+ +...+ +..+++
T Consensus 66 -~---~~~v~~~-----------~gl~~sl~~a~~~~~-------~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 66 -E---ARVLLDE-----------KDLNEALNRYLKEAE-------EPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp -S---SEEEECC-----------SCHHHHHHHHHHHCC-------SCEEEECSCCTTCCHHHHHHHTT
T ss_pred -C---CEEEECC-----------CCHHHHHHHHHHhcC-------CCEEEEcCCcCCCCHHHHHHHHc
Confidence 1 3343321 378899988875542 6799999999 55554 666665
|
| >1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* | Back alignment and structure |
|---|
Probab=85.01 E-value=15 Score=34.01 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=64.9
Q ss_pred eeeCCcchhHHHHHHHHHhcCC--cEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecc--------cccCcCC
Q 043870 118 VPIGGCYRLIDVPMSNCINSGI--KKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAAT--------QRQGESG 187 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~gi--~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~--------~~~~~~~ 187 (526)
+|.-++...|..+|+.+.+... -+|+||-+...+...+.+. .+.- ...+.++... +.
T Consensus 7 Ip~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~-~~~~-------~~~i~~i~~~~~~~~~~~~n----- 73 (255)
T 1qg8_A 7 MTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIR-PFLN-------DNRVRFYQSDISGVKERTEK----- 73 (255)
T ss_dssp EEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHG-GGGG-------STTEEEEECCCCSHHHHHSS-----
T ss_pred EEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHH-HHhh-------cCCEEEEecccccccccccc-----
Confidence 4555554788899999887543 3677776654444445444 2210 1126665543 22
Q ss_pred CccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHc-CCcE
Q 043870 188 KKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINS-GGDI 243 (526)
Q Consensus 188 ~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~-~ad~ 243 (526)
.|.+.+...++...+ .+.++++.+|.+...+ +..+++.+.+. +.++
T Consensus 74 ----~G~~~a~N~gi~~a~------g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~ 121 (255)
T 1qg8_A 74 ----TRYAALINQAIEMAE------GEYITYATDDNIYMPDRLLKMVRELDTHPEKAV 121 (255)
T ss_dssp ----CHHHHHHHHHHHHCC------CSEEEEEETTEEECTTHHHHHHHHHHHCTTCCE
T ss_pred ----cCHHHHHHHHHHHcC------CCEEEEeCCCCccChHHHHHHHHHHHhCCCceE
Confidence 577777777766554 3889999999988887 67777776654 4443
|
| >3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=84.58 E-value=4.3 Score=38.69 Aligned_cols=87 Identities=5% Similarity=-0.041 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHhcCCcEEEEEeccChhHH---HHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChHHHHHHH
Q 043870 125 RLIDVPMSNCINSGIKKIYILTQFNSQSL---NRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQF 201 (526)
Q Consensus 125 pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l---~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~ 201 (526)
+|+.++++.+.+++...++++++.....+ ...+. .+ +.++. |.. .|.+.+++.+
T Consensus 38 ~ll~~tl~~~~~~~~~~vvvvt~~~~~~~~~~~~~~~------------~~-~~~~~--q~~--------~gLg~rl~~a 94 (242)
T 3cgx_A 38 HFVQDMLQGLARLHADLHICYVPGDADLPEKFKAWLG------------PQ-HMFAA--QQG--------LDLGERMKHA 94 (242)
T ss_dssp HHHHHHHHHHTTSSSEEEEEECCCCTTHHHHHHHHHC------------TT-SEEEE--CCS--------SSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCchhhhhhhhhhcc------------CC-cEEec--CCC--------CCHHHHHHHH
Confidence 79999999999998888888887655443 22221 01 22222 221 5788999998
Q ss_pred HHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHH
Q 043870 202 IWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHI 237 (526)
Q Consensus 202 ~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~ 237 (526)
...+-. ...+.++++.+|+ +...++.++++.+.
T Consensus 95 ~~~~~~---~~~~~vliigaD~P~L~~~~l~~a~~~l~ 129 (242)
T 3cgx_A 95 MQKAFD---DGYDRVVLMGSDIPDYPCELVQKALNDLQ 129 (242)
T ss_dssp HHHHHH---TTCSEEEEECSSCTTCCHHHHHHHHHHTT
T ss_pred HHHHHh---CCCCeEEEEcCCCCCCCHHHHHHHHHHhc
Confidence 876622 2347899999999 55556888887544
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=82.98 E-value=7.5 Score=35.71 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=63.8
Q ss_pred eeeCCcchhHHHHHHHHHhcCC--cEEEEEeccChhHHHHHhh---hcccCCCCcccCCCeEEEEecccccCcCCCcccc
Q 043870 118 VPIGGCYRLIDVPMSNCINSGI--KKIYILTQFNSQSLNRHIS---RTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQ 192 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~gi--~~I~Iv~~~~~~~l~~~l~---~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~ 192 (526)
+|.-++...|..+|+.+.+... -+|+||-+...+...+.+. ..+ ..+.++.. .. .
T Consensus 11 Ip~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~----------~~i~~i~~-~n---------~ 70 (240)
T 3bcv_A 11 VPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQY----------PNIKVIHK-KN---------A 70 (240)
T ss_dssp EEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHC----------SSEEEEEC-CC---------C
T ss_pred EecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhC----------CCEEEEEC-CC---------C
Confidence 3444444688888888887543 3677765433332222222 121 12556642 22 5
Q ss_pred ChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEE
Q 043870 193 GTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISV 245 (526)
Q Consensus 193 Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti 245 (526)
|.+.+.-.++...+. +.++++..|.+...+ +..+++...+.+.++.+
T Consensus 71 G~~~a~N~g~~~a~g------~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~ 118 (240)
T 3bcv_A 71 GLGMACNSGLDVATG------EYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVF 118 (240)
T ss_dssp CHHHHHHHHHHHCCS------SEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEE
T ss_pred ChHHHHHHHHHHcCC------CEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEE
Confidence 888888888766543 889999999988888 67777777665666544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 526 | ||||
| d1yp2a2 | 307 | c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr | 5e-72 | |
| d1yp2a1 | 135 | b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt | 2e-34 | |
| d1fxoa_ | 292 | c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa | 3e-31 | |
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 3e-28 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 6e-28 | |
| d2icya2 | 378 | c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 | 1e-20 | |
| d1tzfa_ | 259 | c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf | 4e-19 | |
| d1g97a2 | 250 | c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate | 2e-11 | |
| d1jyka_ | 229 | c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer | 1e-08 | |
| d2oi6a2 | 248 | c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate | 9e-05 | |
| d2cu2a2 | 268 | c.68.1.20 (A:1-268) Putative mannose-1-phosphate g | 2e-04 | |
| d1fxja1 | 78 | b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha | 2e-04 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 229 bits (585), Expect = 5e-72
Identities = 178/303 (58%), Positives = 223/303 (73%), Gaps = 7/303 (2%)
Query: 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNS 150
++V IILGGGAGTRL+PLT +RAKPAVP+G YRLID+P+SNC+NS I KIY+LTQFNS
Sbjct: 10 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS 69
Query: 151 QSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKH 210
SLNRH+SR Y G +GFVEVLAA Q WFQGTADAVRQ++W+F +
Sbjct: 70 ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPD--WFQGTADAVRQYLWLF---EE 124
Query: 211 RNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIR 270
+ LIL+GDHLYRMDY F+Q H + DI+V LP+DE RA+ FGLMKIDE GRI
Sbjct: 125 HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRII 184
Query: 271 QFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAND 330
+F EKP+GE L++M++DTT LGL + A+ P+IASMGIY+ +V+L +LR +P AND
Sbjct: 185 EFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGAND 244
Query: 331 FGSEVIP-MATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKP-PKFHFYDPQKPIFT 388
FGSEVIP + VQAYL++ YWEDIGTI++F++ANL +T KP P F FYD PI+T
Sbjct: 245 FGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYT 304
Query: 389 SPR 391
PR
Sbjct: 305 QPR 307
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 124 bits (312), Expect = 2e-34
Identities = 68/135 (50%), Positives = 97/135 (71%)
Query: 392 FLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEA 451
+LPPSK+ V DS+I GC ++ C + HS+VG+RS + G ++D+++MGADYY+T+A
Sbjct: 1 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDA 60
Query: 452 EIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGI 511
+ L A+G VP+GIG++ IK IIDKNA+IG NV I NKD V+EA R +DG++I+SGI
Sbjct: 61 DRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI 120
Query: 512 TVVLKNTTIKDGTII 526
V+K+ I G II
Sbjct: 121 VTVIKDALIPSGIII 135
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 120 bits (302), Expect = 3e-31
Identities = 60/276 (21%), Positives = 104/276 (37%), Gaps = 49/276 (17%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
IIL GG+GTRL P T +K +P+ +I P+S + +GI++I I++ +
Sbjct: 5 IILAGGSGTRLHPATLAISKQLLPVYD-KPMIYYPLSTLMLAGIREILIISTPQDTPRFQ 63
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ LGDG N+G +++ A Q G A A N +
Sbjct: 64 QL-----LGDGSNWG---LDLQYAVQ-------PSPDGLAQAFLIGESFI-----GNDLS 103
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEK 275
L+L + Y D+ + + SV V + +G+++ D+ G+ EK
Sbjct: 104 ALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD--PERYGVVEFDQGGKAISLEEK 161
Query: 276 PKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA--NDFGS 333
P +S N+ A G+Y + +V + + R P +
Sbjct: 162 PL--EPKS----------------NY---AVTGLYFYDQQV-VDIARDLKPSPRGELEIT 199
Query: 334 EVIPMATKDFNVQAYLFND--YWEDIGTIKSFFDAN 367
+V + + + W D GT S +A
Sbjct: 200 DVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAG 235
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 111 bits (280), Expect = 3e-28
Identities = 61/279 (21%), Positives = 108/279 (38%), Gaps = 55/279 (19%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
IIL GG+GTRL P+T +K +PI +I P+S + +GI++I I+T + +
Sbjct: 5 IILAGGSGTRLHPITRGVSKQLLPIYD-KPMIYYPLSVLMLAGIREILIITTPEDKGYFQ 63
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAV---RQFIWMFEDAKHRN 212
+ LGDG FG +++ A Q + G A A F+
Sbjct: 64 RL-----LGDGSEFG---IQLEYAEQPSPD-------GLAQAFIIGETFL--------NG 100
Query: 213 IENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQF 272
+ L+L + + + ++H +V V + FG+++ D+ R
Sbjct: 101 EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD--PERFGVVEFDDNFRAISL 158
Query: 273 LEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAN--D 330
EKP + +S A G+Y + ++V ++ + P
Sbjct: 159 EEKP--KQPKS-------------------NWAVTGLYFYDSKV-VEYAKQVKPSERGEL 196
Query: 331 FGSEVIPMATKDFNVQAYLF--NDYWEDIGTIKSFFDAN 367
+ + M + N+ L W D GT S +A+
Sbjct: 197 EITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEAS 235
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 111 bits (278), Expect = 6e-28
Identities = 57/275 (20%), Positives = 102/275 (37%), Gaps = 47/275 (17%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
I+L GG+GTRL+P+T +K +PI +I P+S + +GI+ I I++ L R
Sbjct: 7 IVLAGGSGTRLYPITRAVSKQLLPIYD-KPMIYYPLSVLMLAGIRDILIISTPRDLPLYR 65
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ LGDG FG F + ++ +G ADA D+ +
Sbjct: 66 DL-----LGDGSQFGVRFSYRV----------QEEPRGIADAFIVGKDFIGDS-----KV 105
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEK 275
L+L + Y + + ++ + + V + FG+++ D GR+ EK
Sbjct: 106 ALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRD--PRPFGVVEFDSEGRVISIEEK 163
Query: 276 PKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVL--LKVLRWHYPEANDFGS 333
P +S G+Y + +V+ + + + S
Sbjct: 164 P--SRPKSNY-------------------VVPGLYFYDNQVVEIARRIEPSDRGELEITS 202
Query: 334 EVIP-MATKDFNVQAYLFNDYWEDIGTIKSFFDAN 367
+ V+ W D GT +A+
Sbjct: 203 VNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEAS 237
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 91.1 bits (226), Expect = 1e-20
Identities = 26/282 (9%), Positives = 82/282 (29%), Gaps = 38/282 (13%)
Query: 63 SVRSILADVAKDYMTFQAPVFEKPEADP--KAVASIILGGGAGTRLFPLTGRRAKPAVPI 120
+++ ++ Y + E + + L GG GT + K + +
Sbjct: 43 KIQTPTDEIVVPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTM---GCTGPKSVIEV 99
Query: 121 GGCYRLIDVPMSNCI------NSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF----- 169
+D+ + + + + + ++ + + N ++
Sbjct: 100 RDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDIHTFNQSK 159
Query: 170 -----GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIW--MFEDAKHRNIENILILSGD 222
D FV ++ + + + G D + + + E + + + D
Sbjct: 160 YPRVVADEFV--PWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSD 217
Query: 223 HLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLR 282
+L + + ++H I + + + P + L+ + ++ + + P
Sbjct: 218 NLGAIVDLTILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNE 277
Query: 283 SMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWH 324
I+ F + + + K++
Sbjct: 278 FKSIE------------KFKI-FNTNNLWVNLKAIKKLVEAD 306
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Score = 84.7 bits (208), Expect = 4e-19
Identities = 37/281 (13%), Positives = 79/281 (28%), Gaps = 33/281 (11%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
+IL GG GTRL T + KP V IGG ++ M GIK I + +
Sbjct: 6 VILAGGLGTRLSEETIVKPKPMVEIGG-KPILWHIMKMYSVHGIKDFIICCGYKGYVIKE 64
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ + + A + + + N+
Sbjct: 65 YFANYFL-------------------------HMSDVTFHMAENRMEVHHKRVEPWNV-- 97
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEK 275
L+ +GD + V ++ + G+
Sbjct: 98 TLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT 157
Query: 276 PKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSEV 335
++ I + ++ + + + G ++ V+ + + E
Sbjct: 158 FPPGRFGALDIQAGQVRSFQEKPKGDGAMINGGFFVLNPSVIDLIDNDAT----TWEQEP 213
Query: 336 IPMATKDFNVQAYLFNDYWEDIGTIKSFFDAN-LSLTDKPP 375
+ + + A+ +W+ + T++ L K P
Sbjct: 214 LMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKAP 254
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 61.6 bits (148), Expect = 2e-11
Identities = 35/264 (13%), Positives = 76/264 (28%), Gaps = 45/264 (17%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
IIL G GTR+ K + G +++ + +K + ++ +
Sbjct: 5 IILAAGKGTRMKSDL---PKVLHKVAGIS-MLEHVFRSVGAIQPEKTVTVVGHKAELVEE 60
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
++ + GT AV + E
Sbjct: 61 VLAGQTE----------------------FVTQSEQLGTGHAVMMTEPILEG--LSGHTL 96
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEK 275
++ + + + HIN ++ D +G + ++ + + +E+
Sbjct: 97 VIAGDTPLITGESLKNLIDFHINHKNVATILTAETD--NPFGYGRIVRNDNAEVLRIVEQ 154
Query: 276 PKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSEV 335
K QI G + LK + + + + ++V
Sbjct: 155 -KDATDFEKQIKEINTGTYVFDNERLFEA-------------LKNINTNNAQGEYYITDV 200
Query: 336 IPMATKD-FNVQAYLFNDYWEDIG 358
I + + V AY D+ E +G
Sbjct: 201 IGIFRETGEKVGAYTLKDFDESLG 224
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Score = 53.5 bits (127), Expect = 1e-08
Identities = 29/279 (10%), Positives = 74/279 (26%), Gaps = 67/279 (24%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
IIL G GTRL PLT K V + LI+ + GI I I+ + + +
Sbjct: 7 IILAAGLGTRLRPLTENTPKALVQVNQ-KPLIEYQIEFLKEKGINDIIIIVGYLKEQFDY 65
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ + + + + + D
Sbjct: 66 LKEKYGVRLVFNDK------------YADYNNFYSLYLVKEELANSYVIDAD-------- 105
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEK 275
++L++ + + + V ++ + + +++ +
Sbjct: 106 ------NYLFKNMFRNDLTRS---------TYFSVYREDCTNEWFLVYGDDYKVQDIIVD 150
Query: 276 PKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW---HYPEA---N 329
K G+ + K++ + Y +
Sbjct: 151 SKAGR------------------------ILSGVSFWDAPTAEKIVSFIDKAYVSGEFVD 186
Query: 330 DFGSEVIPMATKDFNVQAYLF-NDYWEDIGTIKSFFDAN 367
+ ++ K+ +V + +I +++ +
Sbjct: 187 LYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE 225
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 42.0 bits (97), Expect = 9e-05
Identities = 29/263 (11%), Positives = 64/263 (24%), Gaps = 46/263 (17%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
+IL G GTR++ K + G ++ + G ++++ L +
Sbjct: 6 VILAAGKGTRMYS---DLPKVLHTLAG-KAMVQHVIDAANELGAAHVHLVYGHGGDLLKQ 61
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ + GT A++Q +
Sbjct: 62 ALKDDN---------------------LNWVLQAEQLGTGHAMQQAA------PFFADDE 94
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEK 275
+++ + + Q ++ + L V + +G + + K
Sbjct: 95 DILMLYGDVPLISVETL-QRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHK 153
Query: 276 PKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSEV 335
+ R + QE IA+ L D +
Sbjct: 154 DATDEQRQI-----------QEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIAL- 201
Query: 336 IPMATKDFNVQAYLFNDYWEDIG 358
+ + A E G
Sbjct: 202 --AYQEGREIVAVHPQRLSEVEG 222
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 37/271 (13%), Positives = 76/271 (28%), Gaps = 13/271 (4%)
Query: 96 IILGGGAGTRLFPL-TGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLN 154
+++ GG G RL+PL R KP +P+ L++ + + + +
Sbjct: 6 LVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERL--APLVPPERTLLAVRRDQE 63
Query: 155 RHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIE 214
+ + G A E+ K+ + ++A +
Sbjct: 64 AVARPYADGIRLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALA 123
Query: 215 NILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLE 274
+L + + + + G I + R F +++
Sbjct: 124 TMLEAAEEG-FVVALGLRPTRPETEYGYIRLGPREGAWYRGEGF----VEKPSYAEALEY 178
Query: 275 KPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSE 334
KG ++ R+ P L L +V Y +
Sbjct: 179 IRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEV----YAGLPKISID 234
Query: 335 VIPMATKDFNVQAYLFNDYWEDIGTIKSFFD 365
M K V+ L W+D+G ++
Sbjct: 235 YGVME-KAERVRVVLGRFPWDDVGNWRALER 264
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 37.9 bits (88), Expect = 2e-04
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 463 PVGIGRDTKI-KNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIK 521
+ GRD +I N II+ N +G V I V + D I V+++ +
Sbjct: 14 TLTHGRDVEIDTNVIIEGNVTLGHRVKIGT-GCVIKNSVIGDDCEISPY--TVVEDANLA 70
Query: 522 DGTII 526
I
Sbjct: 71 AACTI 75
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 526 | |||
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 100.0 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 100.0 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 99.97 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 99.96 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.96 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.94 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.9 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.88 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.7 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.65 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.61 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.6 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.51 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.46 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.44 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.43 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.41 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 99.4 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 99.4 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 99.28 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 99.26 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.21 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.1 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 99.09 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.08 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 99.07 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.06 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 99.03 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.02 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.92 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 98.88 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.85 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.85 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 98.84 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 98.82 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.78 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.78 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.77 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.76 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 98.75 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.68 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.61 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.54 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.51 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.5 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.49 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.41 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.24 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.2 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 98.15 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.11 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.09 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.03 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 97.83 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 97.65 | |
| d1omza_ | 265 | Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga | 83.13 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=2.6e-43 Score=354.43 Aligned_cols=296 Identities=61% Similarity=1.081 Sum_probs=246.1
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
+++.|||||||.||||+|||..+|||||||+|++|||+|+|++|.++||++|+|+++++.+++.+|+.+.+.........
T Consensus 10 ~~~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~~ 89 (307)
T d1yp2a2 10 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 89 (307)
T ss_dssp HHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC--------
T ss_pred CceEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhcccccccccccc
Confidence 45899999999999999999999999999998669999999999999999999999999999999998876432211111
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
.+...++...+.. .+..|..|++++++.+.+.+++ ...++|++++||+++..|+..+++.|+.+++++++.+..+
T Consensus 90 ~~~~~~~~~~~~~--~~~~~~~g~~~ai~~~~~~i~~---~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 164 (307)
T d1yp2a2 90 EGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPM 164 (307)
T ss_dssp CCEEEEEESCSST--TSCCCCCSHHHHHHHTHHHHTT---SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEE
T ss_pred cccceeeceeeec--cccccccchhHHHHHhHHhhhc---cccceEEEecCcceeccchhhhhhhhhhccccceEEEEec
Confidence 2334444444442 3456788999999999999975 4568999999999999999999999999999999888877
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCC
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAND 330 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d 330 (526)
..+++..||++.+|++++|..|.|||.......+.++..++.+.........+++++|+|+|++++|..+++...+...+
T Consensus 165 ~~~~~~~~gvv~~d~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~ 244 (307)
T d1yp2a2 165 DEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGAND 244 (307)
T ss_dssp CHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCC
T ss_pred ccccccccceEEECCCCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccccccc
Confidence 77777889999999999999999999987777777888888887777777888999999999999998888877777788
Q ss_pred hhhchHhhhhc-CCcEEEEEecceeeecCChhhHHHhchhhcCCC-CCcccCCCCCcccCCCC
Q 043870 331 FGSEVIPMATK-DFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKP-PKFHFYDPQKPIFTSPR 391 (526)
Q Consensus 331 ~~~dil~~li~-~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~-~~~~~~~~~~~i~~~~~ 391 (526)
+..++++.+++ +++|++|+++|+|.||||+++|++||+.++... +.+.+|+++.+|||.++
T Consensus 245 ~~~d~i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~~~~~~~~~~~~~~i~~~~~ 307 (307)
T d1yp2a2 245 FGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPR 307 (307)
T ss_dssp TTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCC
T ss_pred hHHHHHHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcCCCchhhccCCCCCccCCCC
Confidence 88999998877 578999999999999999999999999998776 45689999999999764
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=2.9e-38 Score=315.76 Aligned_cols=234 Identities=23% Similarity=0.318 Sum_probs=194.9
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccC-hhHHHHHhhhcccCCCCcccC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFN-SQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~-~~~l~~~l~~~~~~~~~~~~~ 170 (526)
+++|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++++. .+.+.+++.... +|+
T Consensus 1 k~KavILAgG~GtRl~plT~~~pKpllpi~gk-PiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~~~~~------~~g 73 (292)
T d1fxoa_ 1 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGS------NWG 73 (292)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSG------GGT
T ss_pred CcEEEEECCCCCCcCChhhcCCCcccCEECCE-ehHHHHHHHHHHCCCCEEEEEeCcCCHHHHHHHhcccc------ccC
Confidence 36999999999999999999999999999999 9999999999999999999888754 445556665332 333
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
+.+....|. ++.||++|+..+.+++++ .+.|+++++|++++.|+.+++++|.++++.++|++.++
T Consensus 74 ---~~I~y~~q~-------~~~Gta~ai~~a~~~i~~-----~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V 138 (292)
T d1fxoa_ 74 ---LDLQYAVQP-------SPDGLAQAFLIGESFIGN-----DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHV 138 (292)
T ss_dssp ---CEEEEEECS-------SCCCGGGHHHHTHHHHTT-----SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEEC
T ss_pred ---eEEEEccCC-------CCCcHHHHHHhhhhhcCC-----CceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEEC
Confidence 233332333 458999999999999974 34567888889999999999999999999999999998
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCC--
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA-- 328 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~-- 328 (526)
++ +.+||++.+|++|+++.|.|||..+ .++++.+|+|+|+++++. +++...|..
T Consensus 139 ~~--p~~yGV~~~d~~~ki~~~~EKP~~p---------------------~Snla~~G~Y~f~~~~~~-~~~~l~~s~rg 194 (292)
T d1fxoa_ 139 LD--PERYGVVEFDQGGKAISLEEKPLEP---------------------KSNYAVTGLYFYDQQVVD-IARDLKPSPRG 194 (292)
T ss_dssp SC--GGGSEEEEECTTSCEEEEEESCSSC---------------------SSSEEEEEEEEECTTHHH-HHHHCCCCTTS
T ss_pred CC--HHHCeEEEEcCCCCEeEEEECCCCC---------------------CCCcEEEEEEEEChHHHH-HHHhCCCCCCC
Confidence 76 5689999999999999999999876 689999999999999985 677665552
Q ss_pred CChhhchHhhhhcCCcEEEEEec-c-eeeecCChhhHHHhchhhc
Q 043870 329 NDFGSEVIPMATKDFNVQAYLFN-D-YWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 329 ~d~~~dil~~li~~~~V~~~~~~-~-~w~dIgt~~d~~~An~~ll 371 (526)
+....|+++.++++.++.++.+. + +|+|+||+++|.+|+..+.
T Consensus 195 E~eitD~~~~~l~~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~ 239 (292)
T d1fxoa_ 195 ELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 239 (292)
T ss_dssp SCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 23457999999999888887774 3 5999999999999997653
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-37 Score=307.73 Aligned_cols=233 Identities=25% Similarity=0.374 Sum_probs=191.8
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHH-HHHhhhcccCCCCcccC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSL-NRHISRTYNLGDGMNFG 170 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l-~~~l~~~~~~~~~~~~~ 170 (526)
.|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+||++|+|++++..+.. ++++. ++.+|+
T Consensus 1 ~MkaiIlagG~GtRl~p~t~~~pK~llpi~~k-p~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~~~------~g~~~g 73 (291)
T d1mc3a_ 1 HMKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLG------DGSEFG 73 (291)
T ss_dssp CCEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHT------TSGGGT
T ss_pred CccEEEECCcCccccchhhcCCCccccEECCE-ehHHHHHHHHHHcCCCEEEEEeCcccHHHHHHHhC------chHhhC
Confidence 38999999999999999999999999999999 99999999999999999999999887654 44444 333444
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
+.+....|.. +.||++|+..+.+++++ .+.+|++++|+++..++.++++.|.++++++||++.++
T Consensus 74 ---i~I~y~~Q~~-------plGta~Ai~~a~~fi~~-----~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V 138 (291)
T d1mc3a_ 74 ---IQLEYAEQPS-------PDGLAQAFIIGETFLNG-----EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQV 138 (291)
T ss_dssp ---CEEEEEECSS-------CCCSTHHHHHTHHHHTT-----SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEEC
T ss_pred ---cEEEEEECCC-------CCchHHHHHHHHHHhCC-----CCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEEC
Confidence 3333333443 48999999999999974 23456667777899999999999999888999999998
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-CC
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-AN 329 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-~~ 329 (526)
++ +++||++.+|++|+|..|.|||..+ .++++++|+|+|+++++. +++...|. +.
T Consensus 139 ~d--P~~yGVve~d~~g~i~~i~EKP~~p---------------------~Sn~a~~GiY~f~~~v~~-~~~~lk~s~rg 194 (291)
T d1mc3a_ 139 MD--PERFGVVEFDDNFRAISLEEKPKQP---------------------KSNWAVTGLYFYDSKVVE-YAKQVKPSERG 194 (291)
T ss_dssp SC--CSSSBBCEEETTEEEEECCBSCSSC---------------------SCSEEEEEEEECCTHHHH-HHHSCCCCSSS
T ss_pred CC--cccCCCceeccCcceeEEEECCCCC---------------------CCCeEEEEEEEeChHHHH-HHhcCCCCCCC
Confidence 76 6789999999999999999999876 578999999999999995 66665554 23
Q ss_pred Ch-hhchHhhhhcCCcEEEEEec-c-eeeecCChhhHHHhchhh
Q 043870 330 DF-GSEVIPMATKDFNVQAYLFN-D-YWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 330 d~-~~dil~~li~~~~V~~~~~~-~-~w~dIgt~~d~~~An~~l 370 (526)
++ ..++++.++++.++..+.+. + +|+|+||+++|.+|+..+
T Consensus 195 E~EItdl~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v 238 (291)
T d1mc3a_ 195 ELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFV 238 (291)
T ss_dssp SCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 33 36888888888887776654 4 699999999999999754
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=100.00 E-value=2.1e-32 Score=274.47 Aligned_cols=234 Identities=22% Similarity=0.298 Sum_probs=186.5
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHH-HHhhhcccCCCCccc
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLN-RHISRTYNLGDGMNF 169 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~-~~l~~~~~~~~~~~~ 169 (526)
+.|+|||||||.||||+|+|...||||+||+|+ |||+|++++|..+|+++++|++++....+. +++.+.. .+
T Consensus 2 ~~MkavIlagG~GtRl~p~t~~~PK~ll~i~~k-pii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~~~~~------~~ 74 (295)
T d1lvwa_ 2 AHMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGS------QF 74 (295)
T ss_dssp CSCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSG------GG
T ss_pred CCcEEEEECCCCcccCCcccCCCCcccCeECCE-EHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHHhccch------hc
Confidence 468999999999999999999999999999999 999999999999999999999998876544 4443221 12
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
+. .+.++.. + .+.||++|+..+...+++ .+.++++++|+++..++..++..|.+.+.++|+++.+
T Consensus 75 ~~-~i~~v~e--~-------~~~gta~Al~~a~~~l~~-----~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~ 139 (295)
T d1lvwa_ 75 GV-RFSYRVQ--E-------EPRGIADAFIVGKDFIGD-----SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYY 139 (295)
T ss_dssp TS-EEEEEEC--S-------SCCCGGGHHHHTHHHHTT-----SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEE
T ss_pred CC-EEEEEEC--C-------CCCCHHHHHHHHHHHcCC-----CCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEE
Confidence 21 2444432 2 137999999999998863 3457788888899999999999999999999999988
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-C
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-A 328 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-~ 328 (526)
+++ +.+||++.++++++|..|.|||..+ .++++++|+|+|++++|. +++...+. .
T Consensus 140 ~~~--~~~yG~i~~~~~~~v~~~~EKp~~~---------------------~s~~~~~Giy~~n~~if~-~~~~~~~~~~ 195 (295)
T d1lvwa_ 140 VRD--PRPFGVVEFDSEGRVISIEEKPSRP---------------------KSNYVVPGLYFYDNQVVE-IARRIEPSDR 195 (295)
T ss_dssp CSC--CTTSEEEEECTTSBEEEEEESCSSC---------------------SCSEECCSEEEECTTHHH-HHHHCCCCTT
T ss_pred cCC--CccccEEEECCCCcEEEEeecccCc---------------------ccceeecceEEECHHHHH-HHHhcCCCcC
Confidence 766 5689999999999999999999864 467899999999999985 55543322 2
Q ss_pred C-ChhhchHhhhhcCCc--EEEEEecceeeecCChhhHHHhchhh
Q 043870 329 N-DFGSEVIPMATKDFN--VQAYLFNDYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 329 ~-d~~~dil~~li~~~~--V~~~~~~~~w~dIgt~~d~~~An~~l 370 (526)
. ....++++.+++... ++.+..+.+|.|+||+++|.+|+..+
T Consensus 196 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i 240 (295)
T d1lvwa_ 196 GELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFI 240 (295)
T ss_dssp SCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHH
T ss_pred CCeeccchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHHH
Confidence 2 234677777777554 44555567899999999999998765
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=1.3e-30 Score=253.07 Aligned_cols=241 Identities=20% Similarity=0.307 Sum_probs=177.8
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc--
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF-- 169 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~-- 169 (526)
..+|||||||.||||+|+|.+.||||+||+|+ |||+|+|++|.++|+++|+|+++|.++.+.+|+.+.+.+.....+
T Consensus 2 ~~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gk-plI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~~ 80 (259)
T d1tzfa_ 2 ASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHM 80 (259)
T ss_dssp CCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEG
T ss_pred CceEEEECCCccccCChhhCCCCccceEECCE-EHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccchh
Confidence 46899999999999999999999999999999 999999999999999999999999999999998754422111100
Q ss_pred ------------CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHH
Q 043870 170 ------------GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHI 237 (526)
Q Consensus 170 ------------~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~ 237 (526)
....+.++.... ..++.+++..+.+.+. ..++|+++++|.+++.++..++..|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~ 146 (259)
T d1tzfa_ 81 AENRMEVHHKRVEPWNVTLVDTGD---------SSMTGGRLKRVAEYVK-----DDEAFLFTYGDGVADLDIKATIDFHK 146 (259)
T ss_dssp GGTEEEETTCCCCCCEEEEEECCS---------SCCHHHHHHHTGGGTT-----TSSCEEEEETTEEECCCHHHHHHHHH
T ss_pred ccccchhhhccccccceeEEeccc---------cccccchhhhhhhhcc-----CCCceEEeccccccccchhhhhhhhc
Confidence 011133333222 2688888887766553 34779999999999999999999998
Q ss_pred HcCCcEEEEEEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHH
Q 043870 238 NSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVL 317 (526)
Q Consensus 238 ~~~ad~ti~~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l 317 (526)
......++..... .+.++.+... .+++..+.+.+.. .+++.++|+|+++++++
T Consensus 147 ~~~~~~~~~~~~~----~~~~~~~~~~-~~~i~~~~~~~~~----------------------~~~~~~~G~y~~~~~~~ 199 (259)
T d1tzfa_ 147 AHGKKATLTATFP----PGRFGALDIQ-AGQVRSFQEKPKG----------------------DGAMINGGFFVLNPSVI 199 (259)
T ss_dssp HHCCSEEEEEECC----CCCSEEEEEE-TTEEEEEEESCSC----------------------CSCCEECCCEEECGGGG
T ss_pred ccccceeeccccc----cccCCceecc-cceEEeeeecccc----------------------ceeeecceeccccchhh
Confidence 8888777655432 3356655543 4566666655543 45688999999999977
Q ss_pred HHHHHhhCCCCCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCCCCcc
Q 043870 318 LKVLRWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFH 378 (526)
Q Consensus 318 ~~ll~~~~~~~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~~ 378 (526)
. .++ .....+..++++.++++.++.+|.+++||.||||++||..+|..+....++..
T Consensus 200 ~-~i~---~~~~~~~~~~l~~l~~~~~v~~~~~~g~W~didt~~d~~~~~~~~~~~~~~~~ 256 (259)
T d1tzfa_ 200 D-LID---NDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKAPWK 256 (259)
T ss_dssp G-GCC---STTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTTCCTTC
T ss_pred h-hcc---cCcCccHHHHHHHHHhcCCeEEEEeCCEEEECCCHHHHHHHHHHHHcCCCCCC
Confidence 5 322 22445667899999999999999999999999999999999998887655443
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=2.9e-30 Score=255.23 Aligned_cols=235 Identities=20% Similarity=0.314 Sum_probs=168.9
Q ss_pred CceEEEEEcCCCCccccCc-cCCCCccceeeC-CcchhHHHHHHHHHh-cCCcEEEEEeccChhHHHHHhhhcccCCCCc
Q 043870 91 KAVASIILGGGAGTRLFPL-TGRRAKPAVPIG-GCYRLIDVPMSNCIN-SGIKKIYILTQFNSQSLNRHISRTYNLGDGM 167 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Pl-t~~~pK~LlpV~-g~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~ 167 (526)
|++.|||||||.||||+|| |+.+||||+||. |+ |||+++++++.. .++++++|++++..+.+.++... +
T Consensus 1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k-~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~~~------~- 72 (268)
T d2cu2a2 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQEAVARPYAD------G- 72 (268)
T ss_dssp CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGC-BHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCS------S-
T ss_pred CCceEEEecCCCcccCCCcccCCCCceeeecCCCC-CHHHHHHHHhhCcCCccchhhhhhHHHHHHhhhhcc------c-
Confidence 4567999999999999999 677899999985 57 999999999987 47889999999987766554321 1
Q ss_pred ccCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCH--HHHHHHH---HHcCCc
Q 043870 168 NFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDY--MDFVQHH---INSGGD 242 (526)
Q Consensus 168 ~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl--~~ll~~h---~~~~ad 242 (526)
+.++...+ ..||+.++..+...+.. ...+.++|++||+++..++ ...+..+ .+.+..
T Consensus 73 ------~~ii~E~~---------~~~t~~a~~~~~~~~~~---~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~ 134 (268)
T d2cu2a2 73 ------IRLLLEPL---------GRDTAGAVLLGVAEALK---EGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFV 134 (268)
T ss_dssp ------SEEEEESS---------CCHHHHHHHHHHHHHHH---HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCE
T ss_pred ------cceeeeee---------cCCcccchhhHHHHHhc---cCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCe
Confidence 22332222 26899999988766643 3558899999999998874 3444432 234555
Q ss_pred EEEEEEEccCCcCCCceEEEEcCCC----CeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHH
Q 043870 243 ISVCCLPVDESRASDFGLMKIDETG----RIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLL 318 (526)
Q Consensus 243 ~ti~~~~~~~~~~~~~g~v~~d~~g----~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~ 318 (526)
+++...+.. .+..||++..++++ +|..|.|||.....+. .....+++|+|+|+|++++|.
T Consensus 135 ~~~~~~~~~--~~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~~~~--------------~~~~~~~~N~Giy~f~~~~l~ 198 (268)
T d2cu2a2 135 VALGLRPTR--PETEYGYIRLGPREGAWYRGEGFVEKPSYAEALE--------------YIRKGYVWNGGVFAFAPATMA 198 (268)
T ss_dssp EEEEECCSS--CCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHH--------------HHHTTCEEEEEEEEECHHHHH
T ss_pred Eeeeccccc--cccccceEEeccccccchhhheeecccchhhhhh--------------hhccCcccchhhhhcchHHHH
Confidence 566555543 36789999987653 7999999998653211 112458999999999999987
Q ss_pred HHHHhhCCCC---------CChhhchHhhh---------h-cCCcEEEEEecceeeecCChhhHHHhc
Q 043870 319 KVLRWHYPEA---------NDFGSEVIPMA---------T-KDFNVQAYLFNDYWEDIGTIKSFFDAN 367 (526)
Q Consensus 319 ~ll~~~~~~~---------~d~~~dil~~l---------i-~~~~V~~~~~~~~w~dIgt~~d~~~An 367 (526)
+.++...|+. .....+.++.+ + +..++.+++++++|.|+||++++.+..
T Consensus 199 ~~~~~~~p~i~~~~~~~~~~~~~~~~f~~l~~iSiDyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~ 266 (268)
T d2cu2a2 199 ELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (268)
T ss_dssp HHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHhcchHHHHHhhCccccchhhhhcccCCceEEecCCCcCCCcCHHHHHHHh
Confidence 7766654431 11122333321 1 356899999999999999999998764
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.96 E-value=2.2e-28 Score=233.83 Aligned_cols=220 Identities=15% Similarity=0.212 Sum_probs=163.8
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
++|+|||||||.||||+|+|...||||+||+|+ |||+|+++.|..+|+++|+|+++|.++.+ +++.+.|+
T Consensus 2 m~mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gk-pli~~~i~~l~~~g~~~i~iv~g~~~e~i-~~~~~~~~-------- 71 (229)
T d1jyka_ 2 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQF-DYLKEKYG-------- 71 (229)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGG-THHHHHHC--------
T ss_pred CceeEEEECCCCcccCCccccCCCcceeEECCE-EHHHHHHHHHHHhCCcccccccccchhhh-hhhhhhcc--------
Confidence 568999999999999999999999999999999 99999999999999999999999988876 56665552
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
+.++...+.. ..|+++|++.+.+.++ +++++.++|.+++..+.+.+ ....+....+
T Consensus 72 ---i~i~~~~~~~-------~~Gt~~sl~~a~~~l~-------~~~ii~~dd~~~~~~~~~~~-------~~~~~~~~~~ 127 (229)
T d1jyka_ 72 ---VRLVFNDKYA-------DYNNFYSLYLVKEELA-------NSYVIDADNYLFKNMFRNDL-------TRSTYFSVYR 127 (229)
T ss_dssp ---CEEEECTTTT-------TSCTHHHHHTTGGGCT-------TEEEEETTEEESSCCCCSCC-------CSEEEEECEE
T ss_pred ---cccccccccc-------ccccccccccchhhhc-------ccccccccccccccchhhhh-------hccccceeee
Confidence 3334333322 3799999999877664 56777766667665543322 1122333233
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHH---HHhhCC-
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKV---LRWHYP- 326 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~l---l~~~~~- 326 (526)
.+ ...++.+..+++++|..+.++|.. ..+.+|+|+|++..+..+ ++..+.
T Consensus 128 ~~--~~~~~~~~~~~~~~i~~~~~~~~~------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 181 (229)
T d1jyka_ 128 ED--CTNEWFLVYGDDYKVQDIIVDSKA------------------------GRILSGVSFWDAPTAEKIVSFIDKAYVS 181 (229)
T ss_dssp SS--CSSCCEEEECTTCBEEEEECCCSS------------------------EEBCCSEEEECHHHHHHHHHHHHHHHTT
T ss_pred ee--ccccceeEEccCCceeeEEEeccc------------------------ceEEEEEEEEcHHHHHHHHHHHHHhhcc
Confidence 32 456888899999999999998763 356789999998765433 333211
Q ss_pred -C-CCChhhchHhhhhcCCcEEEEEecc-eeeecCChhhHHHhchhh
Q 043870 327 -E-ANDFGSEVIPMATKDFNVQAYLFND-YWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 327 -~-~~d~~~dil~~li~~~~V~~~~~~~-~w~dIgt~~d~~~An~~l 370 (526)
. .+.+.++++...+++..++++...+ .|.+|||++||.+|+..+
T Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a~~~~ 228 (229)
T d1jyka_ 182 GEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEIL 228 (229)
T ss_dssp TCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHhCCceEEEecCCCEEecCCHHHHHHHHHhh
Confidence 1 2234466778888889999988876 599999999999998754
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.94 E-value=2e-25 Score=214.74 Aligned_cols=232 Identities=16% Similarity=0.236 Sum_probs=178.1
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
..|||||||.||||+| ..||||+||+|+ |||+|++++|.++|+++|+|++++..+.+..+....
T Consensus 2 ~~AIIlAaG~GtRl~~---~~PK~L~~i~Gk-pli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~~~------------ 65 (250)
T d1g97a2 2 NFAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQ------------ 65 (250)
T ss_dssp EEEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTTTT------------
T ss_pred cEEEEECCCCCCCCCC---CCCceeeEECCe-eHHHHHHHHHHHcCCCeEEEecccccchhhhhcccc------------
Confidence 3699999999999998 579999999999 999999999999999999999999887766554321
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeec-ccCHHHHHHHHHHcCCcEEEEEEEcc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLY-RMDYMDFVQHHINSGGDISVCCLPVD 251 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~-~~dl~~ll~~h~~~~ad~ti~~~~~~ 251 (526)
+.+..... +.|+.+++..+...+.. ...+.+++..+|.++ ..++.++++.|.+.++..++...+..
T Consensus 66 -~~~~~~~~---------~~g~~~~~~~a~~~l~~---~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 132 (250)
T d1g97a2 66 -TEFVTQSE---------QLGTGHAVMMTEPILEG---LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETD 132 (250)
T ss_dssp -SEEEECSS---------CCCHHHHHHTTHHHHTT---CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS
T ss_pred -cccccccc---------ccccchHHHHHHHhhhc---ccCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceec
Confidence 12222111 26899999999888863 233445555555554 45699999999999998888887765
Q ss_pred CCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC---C
Q 043870 252 ESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE---A 328 (526)
Q Consensus 252 ~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~---~ 328 (526)
. ...|+.+..++++.+..+.+++..... ....+++.+|+|+|+...|...++..... .
T Consensus 133 ~--~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------------~~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~ 193 (250)
T d1g97a2 133 N--PFGYGRIVRNDNAEVLRIVEQKDATDF-----------------EKQIKEINTGTYVFDNERLFEALKNINTNNAQG 193 (250)
T ss_dssp C--CTTSCEEEECTTCCEEEEECGGGCCHH-----------------HHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTC
T ss_pred c--cCCCceEEEeeceEEEEeecccccccc-----------------ccccceeeeeeeecchHHHHHHHHHhccCcchh
Confidence 4 457888888889999999988765321 11457889999999999888777653221 2
Q ss_pred CChhhchHhhhhc-CCcEEEEEecceeee--cCChhhHHHhchhhcC
Q 043870 329 NDFGSEVIPMATK-DFNVQAYLFNDYWED--IGTIKSFFDANLSLTD 372 (526)
Q Consensus 329 ~d~~~dil~~li~-~~~V~~~~~~~~w~d--Igt~~d~~~An~~ll~ 372 (526)
..+..++++.+++ +.+|.++..+++|.+ |+|++|+..|++.+..
T Consensus 194 ~~~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~ 240 (250)
T d1g97a2 194 EYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRR 240 (250)
T ss_dssp SCCGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHH
Confidence 3456778877776 468999999999976 7799999999887643
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=8e-23 Score=196.72 Aligned_cols=229 Identities=16% Similarity=0.234 Sum_probs=158.8
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
.|++||||||.||||+| ++||||+||+|+ |||+|+|+.+.+.|+++|+|++++..+.+.++.....
T Consensus 2 ~MkvIILAAG~GtRm~~---~~PKpli~i~gk-piie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~~~~~---------- 67 (248)
T d2oi6a2 2 AMSVVILAAGKGTRMYS---DLPKVLHTLAGK-AMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDDN---------- 67 (248)
T ss_dssp CEEEEEECCSCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHCCCTT----------
T ss_pred CceEEEECCCCCCCCCC---CCCeeeEEECCh-hHHHHHHHHHHHcCCcEEEeccCcccceeeeeccccc----------
Confidence 48999999999999997 579999999999 9999999999999999999999999887766643211
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEEEEEEc
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti~~~~~ 250 (526)
..+.. +. .+.|+++++..+...+. ...+++++.+|..+... ....+ .+.......+++....
T Consensus 68 --~~~~~--~~-------~~~g~~~~~~~~~~~i~-----~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 130 (248)
T d2oi6a2 68 --LNWVL--QA-------EQLGTGHAMQQAAPFFA-----DDEDILMLYGDVPLISVETLQRL-RDAKPQGGIGLLTVKL 130 (248)
T ss_dssp --EEEEE--CS-------SCCCHHHHHHHHGGGSC-----TTSEEEEEETTCTTCCHHHHHHH-HHHCCTTSEEEEEEEC
T ss_pred --ccccc--cc-------cCcccHHHHHhhhhhhc-----cccceeeecCccccccchhHHHH-HHHhhccccceeEEEe
Confidence 22221 11 13799999999887764 24678888888866443 22222 1223344445555554
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC--C
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE--A 328 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~--~ 328 (526)
.+ +..++.+..+. +....+.+++.... .........+|.|.|+.+.|.+.++..... .
T Consensus 131 ~~--~~~~~~~~~~~-~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 190 (248)
T d2oi6a2 131 DD--PTGYGRITREN-GKVTGIVEHKDATD-----------------EQRQIQEINTGILIANGADMKRWLAKLTNNNAQ 190 (248)
T ss_dssp SC--CTTSCEEEEET-TEEEEEECGGGCCT-----------------TGGGCCEEEEEEEEEEHHHHHHHHTTCCCCSTT
T ss_pred cC--Ccccccccccc-CccceeeeccCCCh-----------------hhhhhhhhhhhhhccchHHHHHHHHHhhccccc
Confidence 44 45677766654 44444444332211 011456788999999999887777654322 1
Q ss_pred CC-hhhchHhhhhc-CCcEEEEEecceee--ecCChhhHHHhchhhc
Q 043870 329 ND-FGSEVIPMATK-DFNVQAYLFNDYWE--DIGTIKSFFDANLSLT 371 (526)
Q Consensus 329 ~d-~~~dil~~li~-~~~V~~~~~~~~w~--dIgt~~d~~~An~~ll 371 (526)
.+ +..++++.+++ +.+|.++..+++|. .|+|++|+..|++.+.
T Consensus 191 ~e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~ 237 (248)
T d2oi6a2 191 GEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQ 237 (248)
T ss_dssp CSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHH
Confidence 22 34678888776 57899998888874 4889999999988664
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.88 E-value=2e-22 Score=178.07 Aligned_cols=135 Identities=50% Similarity=0.935 Sum_probs=128.4
Q ss_pred CCCCeeecCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCE
Q 043870 392 FLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTK 471 (526)
Q Consensus 392 ~~~~~~i~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ 471 (526)
++||+++.++++.+|+|++||+|+++.+++|+||++|+|++++.|++++++++.++....++..-......++.||++|+
T Consensus 1 ~lPp~~i~~~~i~~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~ 80 (135)
T d1yp2a1 1 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCH 80 (135)
T ss_dssp CCCCEEEEEEEEEEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCE
T ss_pred CCCCcccCCCEEEeCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceE
Confidence 57999999999999999999999988999999999999999999999999999999988888777777777899999999
Q ss_pred EeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 472 IKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 472 i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
|.+|+|++||+||++|++.+...+.++++++++++|++|+++|++|++|++||+|
T Consensus 81 I~~~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~vI 135 (135)
T d1yp2a1 81 IKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 135 (135)
T ss_dssp EESEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred eccceecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcCC
Confidence 9999999999999999999999999999999999999999999999999999997
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=1.3e-16 Score=151.40 Aligned_cols=218 Identities=13% Similarity=0.106 Sum_probs=133.6
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
|++.|||||||.||||+ .+.||+|+||+|+ |||+|+++.+.++ ++++|+||+++..+.+.++....+
T Consensus 2 M~i~AIILAaG~gtRm~---~~~pK~L~~i~gk-plI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~~~-------- 69 (225)
T d1i52a_ 2 LDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANH-------- 69 (225)
T ss_dssp CCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGGGC--------
T ss_pred CCEEEEEeCCCcceeCC---CCCCcceeEECCE-EHHHHHHHHHHhCccccccccccchhhhhhhhhhhccc--------
Confidence 56899999999999998 6789999999999 9999999999987 689999999876654333322211
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~ 247 (526)
..+.+.. +. .+..++++.+...+.+ .+.+++..+|. +...+ +..++..... +....+.+
T Consensus 70 --~~v~~~~--~~---------~~~~~sv~~~~~~~~~-----~~~vl~~~~~~p~i~~~~~~~~~~~~~~-~~~~~v~~ 130 (225)
T d1i52a_ 70 --PQITVVD--GG---------DERADSVLAGLKAAGD-----AQWVLVHDAARPCLHQDDLARLLALSET-SRTGGILA 130 (225)
T ss_dssp --TTEEEEE--CC---------SSHHHHHHHHHHTSTT-----CSEEEECCTTCTTCCHHHHHHHHGGGGT-CSSCEEEE
T ss_pred --ccccccc--CC---------cchhHHHHhhhcccCc-----cceeeeeccCCCCCCHHHHHHHHhhhhh-cccccccc
Confidence 1133332 22 3567889888877753 46788888987 44444 5555555443 34445555
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
.+..+. -......++......++. ......+.+.|..+.+...++....+
T Consensus 131 ~~~~d~-----~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~f~~~~l~~~~~~~~~~ 180 (225)
T d1i52a_ 131 APVRDT-----MKRAEPGKNAIAHTVDRN-------------------------GLWHALTPQFFPRELLHDCLTRALNE 180 (225)
T ss_dssp EECCSC-----EEEECTTSSSEEEEECCT-------------------------TCEEEEEEEEEEHHHHHHHHHHHHHT
T ss_pred cceeec-----cchhcccccccccccchH-------------------------HHHHHhhhhhhhhHHHHHHHHHHHhc
Confidence 554331 011112222222222211 11233466778888777666553222
Q ss_pred CCChhhchHhhhh-cCCcEEEEEecceeeecCChhhHHHhchhh
Q 043870 328 ANDFGSEVIPMAT-KDFNVQAYLFNDYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 328 ~~d~~~dil~~li-~~~~V~~~~~~~~w~dIgt~~d~~~An~~l 370 (526)
... ..|....+. .+.++..+..+..-+.|+||+|+..|+..+
T Consensus 181 ~~~-~tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~l 223 (225)
T d1i52a_ 181 GAT-ITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYL 223 (225)
T ss_dssp TCC-CCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred CCC-CCcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHHh
Confidence 212 233333332 256676655332235699999999998765
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.65 E-value=1.5e-15 Score=144.57 Aligned_cols=218 Identities=14% Similarity=0.116 Sum_probs=125.7
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
.+.+||||||.||||+ ...||+|++++|+ |||+|+|+.+.+++ +++|+|+++....++.+.+...+ .
T Consensus 4 ~i~~IIlAaG~GtRm~---~~~pK~l~~l~Gk-pli~~~l~~~~~~~~~~~Iivv~~~~~~~~~~~~~~~~--------~ 71 (226)
T d1w77a1 4 SVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESI--------D 71 (226)
T ss_dssp CEEEEEECCC----------CCCTTTSEETTE-EHHHHHHHHHHTCTTEEEEEEECCGGGTHHHHTTTTSC--------S
T ss_pred ceEEEEeCCccCccCc---CCCCceeeEECCe-eHHHHHHHHHHhhccccceeeccchhhhhhhhcccccc--------c
Confidence 4889999999999998 5789999999999 99999999999884 78899988755444443333222 1
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~~ 248 (526)
..+.+.. .. ..+.++++.++..+. ...+.+++..||. +...+ +..+++.+.+.+.. +...
T Consensus 72 -~~~~~~~--gg---------~~r~~sv~~~l~~~~----~~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~--i~~~ 133 (226)
T d1w77a1 72 -VDLRFAI--PG---------KERQDSVYSGLQEID----VNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAA--VLGV 133 (226)
T ss_dssp -SEEEEEC--CC---------SSHHHHHHHHHHTSC----TTCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEE--EEEE
T ss_pred -ccccccc--cc---------chhhhhhhhhHhhhc----cccccceecccccccccHHHhhhhhhhhhccCce--eecc
Confidence 1133322 11 235788988887765 2457889999999 55554 77788777766543 3333
Q ss_pred EccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCC
Q 043870 249 PVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA 328 (526)
Q Consensus 249 ~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~ 328 (526)
+..+.. .+ ...++.+....+. ......-+-+.|+.+.|...++....+.
T Consensus 134 ~~~d~~--~~----~~~~~~~~~~~~r-------------------------~~~~~~~~p~~f~~~~l~~~~~~~~~~~ 182 (226)
T d1w77a1 134 PAKATI--KE----VNSDSLVVKTLDR-------------------------KTLWEMQTPQVIKPELLKKGFELVKSEG 182 (226)
T ss_dssp ECCSCC--CC----BCTTSCBC-------------------------------CCEEEEEEEEECHHHHHHHHHHHHHSC
T ss_pred ccccce--EE----EccCCceeecccc-------------------------hhhhHHHHHHhHhhHHHHHHHHHHHhcC
Confidence 322211 00 0112222111111 1223445668999888876665432222
Q ss_pred CChhhchHhhh-hcCCcEEEEEecceeeecCChhhHHHhchhhc
Q 043870 329 NDFGSEVIPMA-TKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 329 ~d~~~dil~~l-i~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll 371 (526)
..+ .|....+ ..++++..+..+..=+.|+||+|+..|+..|.
T Consensus 183 ~~~-TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~lL~ 225 (226)
T d1w77a1 183 LEV-TDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILS 225 (226)
T ss_dssp CCC-CC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHHHHH
T ss_pred CCc-CcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHHHhC
Confidence 222 2211111 23667766554333356999999999987663
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=99.61 E-value=1.6e-14 Score=136.70 Aligned_cols=209 Identities=15% Similarity=0.221 Sum_probs=129.0
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCe
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGF 173 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 173 (526)
|||||||.|+||+ ...||+|++|+|+ |||+|+|+.+.++ ++++|+|+++.... +++.... . ....
T Consensus 6 AIILAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~Iivv~~~~~~---~~~~~~~-~------~~~~ 71 (221)
T d1vpaa_ 6 AILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWF---EVVEKRV-F------HEKV 71 (221)
T ss_dssp EEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGH---HHHHTTC-C------CTTE
T ss_pred EEEccCcCcccCC---CCCCcceeEECCE-EHHHHHHHHHHhccccccceEEecchhh---hHHHhhh-c------cccc
Confidence 8999999999997 5789999999999 9999999999987 58999999875543 2332221 0 1122
Q ss_pred EEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEEEEcc
Q 043870 174 VEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCCLPVD 251 (526)
Q Consensus 174 v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~~~~~ 251 (526)
+.+.... .+...++..++..+.. ...+.++++.||. +...+ +..++..+.+... .+...+..
T Consensus 72 ~~~~~~~-----------~~~~~s~~~~~~~~~~---~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~--~~~~~~~~ 135 (221)
T d1vpaa_ 72 LGIVEGG-----------DTRSQSVRSALEFLEK---FSPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLALKNS 135 (221)
T ss_dssp EEEEECC-----------SSHHHHHHHHHHHHGG---GCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEEEECC
T ss_pred ccccccc-----------ccccchHHHHHHHHHh---cCCCcEEEeccccccccHHHHHhhhhhhccccc--cccccccc
Confidence 4333321 2355667776666643 3568899999998 44444 7888887766543 23333222
Q ss_pred CCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCCh
Q 043870 252 ESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDF 331 (526)
Q Consensus 252 ~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d~ 331 (526)
+ .+...+ +++...+ .+ ...+...+-+.|+.+.|....+. ..++
T Consensus 136 d------~~~~~~-~~~~~~~-~~-------------------------~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 178 (221)
T d1vpaa_ 136 D------ALVRVE-NDRIEYI-PR-------------------------KGVYRILTPQAFSYEILKKAHEN----GGEW 178 (221)
T ss_dssp S------EEEEEE-TTEEEEE-CC-------------------------TTEEEEEEEEEEEHHHHHHHHTT----CCCC
T ss_pred c------eeEeec-Cccceec-ch-------------------------HHHHHhhhhhhhhHHHHHHHHHh----CCCC
Confidence 1 122222 2222111 11 12345566788888877655433 1222
Q ss_pred hhchHhhhhc-CCcEEEEEecceeeecCChhhHHHhchhhc
Q 043870 332 GSEVIPMATK-DFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 332 ~~dil~~li~-~~~V~~~~~~~~w~dIgt~~d~~~An~~ll 371 (526)
.|.+..+.. +.+|..+..+...+.|+||+||..|+..+-
T Consensus 179 -tD~~~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae~llk 218 (221)
T d1vpaa_ 179 -ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAR 218 (221)
T ss_dssp -SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHH
T ss_pred -ccHHHHHHHcCCceEEEecChhhcCCCCHHHHHHHHHHHh
Confidence 233333332 566766655444567999999999987653
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.60 E-value=1.2e-14 Score=138.21 Aligned_cols=219 Identities=13% Similarity=0.148 Sum_probs=122.3
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
++..|||||||.|+||+ +..||+|++|+|+ |||+|+++.+.+++ +++|+||+... +.+.+++...+.
T Consensus 2 ~K~iAIIlAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~iivv~~~~-~~~~~~~~~~~~------- 69 (226)
T d1vgwa_ 2 RKNIALIPAAGIGVRFG---ADKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPE-DTFADKVQTAFP------- 69 (226)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTT-CSTHHHHHHHCT-------
T ss_pred CceEEEEeCCCCcccCC---cCCCeeeeEECCE-EHHHHHHHHHHhCCCccccceecchh-hhhhhhhccccc-------
Confidence 34679999999999997 6789999999999 99999999999886 57777776544 344555554431
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhh-ccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDA-KHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVC 246 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~-~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~ 246 (526)
....+... . .....+++.++..+.+. .....+.+++..||. +...+ +..+++.+...+.+.+ .
T Consensus 70 --~~~~~~~g--~---------~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i-~ 135 (226)
T d1vgwa_ 70 --QVRVWKNG--G---------QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGI-L 135 (226)
T ss_dssp --TSEEECCC--C---------SSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEE-E
T ss_pred --ceeecccc--c---------cccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhccccccee-e
Confidence 00211110 0 12445555555444321 113457788889998 55554 7888888877666543 3
Q ss_pred EEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC
Q 043870 247 CLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP 326 (526)
Q Consensus 247 ~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~ 326 (526)
..+..+ .... .+++.+....++.... ....-..|..+.|...+...
T Consensus 136 ~~~~~~------~~~~-~~~~~i~~~~~r~~~~-------------------------~~~~p~~f~~~~l~~~~~~~-- 181 (226)
T d1vgwa_ 136 AVPVAD------TLKR-AESGQISATVDRSGLW-------------------------QAQTPQLFQAGLLHRALAAE-- 181 (226)
T ss_dssp EEECCS------CEEE-ESSSBEEEEECCTTEE-------------------------EEEEEEEEEHHHHHHHHHC---
T ss_pred cccccc------ccee-ccCCeEEeccchHHHH-------------------------HHHhhhcccHHHHHHHHHHh--
Confidence 433322 2222 2466776665544321 11122566767665555432
Q ss_pred CCCChhhchHhhhh-cCCcEEEEEecceeeecCChhhHHHhchhh
Q 043870 327 EANDFGSEVIPMAT-KDFNVQAYLFNDYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 327 ~~~d~~~dil~~li-~~~~V~~~~~~~~w~dIgt~~d~~~An~~l 370 (526)
....+ .|....+. .+.++..+.-+...+.|+||+||..|+..|
T Consensus 182 ~~~~~-tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~ll 225 (226)
T d1vgwa_ 182 NLGGI-TDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLL 225 (226)
T ss_dssp ---CC-CSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHHC
T ss_pred hcCCC-CcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHHHh
Confidence 11222 22222222 366776665554567899999999997654
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.51 E-value=1.7e-14 Score=140.55 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=57.6
Q ss_pred eEECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 464 VGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 464 ~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+.||++++|.+ ++|++||.||+++++.+...+.++.+++++++|+.++. .||++|+|++||+|
T Consensus 109 T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~v~IG~~a~igagS~V 177 (262)
T d2jf2a1 109 TKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGV 177 (262)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEE
T ss_pred eEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCceeccccEeehhceeeccceE
Confidence 78999999985 99999999999999999999999999999999998876 67889999888864
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.46 E-value=2.6e-12 Score=122.71 Aligned_cols=237 Identities=16% Similarity=0.191 Sum_probs=147.4
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
..|||+|.|.++|+. -|+|.+|+|+ |||+|+++++.++++++|+|.|.. +.+.++.. .+ +
T Consensus 2 ~i~iIpAR~gSkrip------~KnL~~i~Gk-pLI~~~i~~a~~s~i~~iiVsTd~--~~i~~~~~-~~--------g-- 61 (246)
T d1vh1a_ 2 FVVIIPARYASTRLP------GKPLVDINGK-PMIVHVLERARESGAERIIVATDH--EDVARAVE-AA--------G-- 61 (246)
T ss_dssp CEEEEECCCCCC--C------CTTTCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHH-HT--------T--
T ss_pred EEEEEecCCCCcCCC------CchhhhcCCc-cHHHHHHHHHHHcCCCcEEEEecC--ccccchhh-cc--------c--
Confidence 468999999999986 4999999999 999999999999999999999964 44445554 22 1
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeec-cc-CHHHHHHHHHHcCCcEEEEEEEc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLY-RM-DYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~-~~-dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
.++....+.. ..|+.... .+...... ...+.++.+.||..+ .. ++..++..+.....+....+.+.
T Consensus 62 -~~v~~~~~~~-------~~~~~~~~-~~~~~~~~---~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~ 129 (246)
T d1vh1a_ 62 -GEVCMTRADH-------QSGTERLA-EVVEKCAF---SDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPI 129 (246)
T ss_dssp -CEEEECC------------CHHHHH-HHHHHTTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEEC
T ss_pred -ccceeecccc-------cccchHHH-HHHHhhcc---cccceeeeeccccccchhhHHHHHhhhhcccccccccccccc
Confidence 1222211111 13444443 33333321 345788999999944 33 47888888888877776666655
Q ss_pred cCCc-C--CCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 251 DESR-A--SDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 251 ~~~~-~--~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
.... . .....+..+.+|++..|.+.+.......... . .......++...|+|+|+++.|...... .+.
T Consensus 130 ~~~~~~~~~~~vk~v~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~giy~~~~~~l~~~~~~-~~s 200 (246)
T d1vh1a_ 130 HNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAE-------G-LETVGDNFLRHLGIYGYRAGFIRRYVNW-QPS 200 (246)
T ss_dssp CCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHSS-------C-CCCCCSCCEEEEEEEEEEHHHHHHHHHS-CCC
T ss_pred cchhcccCCCcceeeecccCcccccccccchhhhhhhhh-------h-hhccchhhheecceeeechhhhhhhccC-CCC
Confidence 4321 1 1122345678899988887665432110000 0 0001145677899999999999755432 222
Q ss_pred CCChh--hchHhhhhcCCcEEEEEecce-eeecCChhhHHHhchhh
Q 043870 328 ANDFG--SEVIPMATKDFNVQAYLFNDY-WEDIGTIKSFFDANLSL 370 (526)
Q Consensus 328 ~~d~~--~dil~~li~~~~V~~~~~~~~-w~dIgt~~d~~~An~~l 370 (526)
..+.. -|.++.+=.+.++.++..+.. ..||||++||..|+..|
T Consensus 201 ~~E~~e~le~lR~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k~m 246 (246)
T d1vh1a_ 201 PLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 246 (246)
T ss_dssp HHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHC
T ss_pred hHHHHHhHHHHHHHHCCCceEEEEecCCCCCCCCCHHHHHHHHhcC
Confidence 11111 123444445788998888764 67999999999998754
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=99.44 E-value=3.3e-12 Score=122.34 Aligned_cols=242 Identities=14% Similarity=0.151 Sum_probs=148.7
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
..|||+|.|.++|+. .|.|.+++|+ |||+|+++++.++++++|+|+|... ++.+.. ..|+. .
T Consensus 2 ~~~iIpAR~gSkRlp------~Knl~~i~Gk-pLI~~~i~~a~~s~i~~IiVsTd~~--~i~~~~-~~~~~--------~ 63 (255)
T d1vica_ 2 FTVIIPARFASSRLP------GKPLADIKGK-PMIQHVFEKALQSGASRVIIATDNE--NVADVA-KSFGA--------E 63 (255)
T ss_dssp CEEEEECCCCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESCH--HHHHHH-HHTTC--------E
T ss_pred EEEEEecCCCCCCCC------CchhhhhCCc-CHHHHHHHHHHHCCCCeEEEEcCCc--ccchhh-hhhcc--------c
Confidence 468999999999986 4999999999 9999999999999999998888643 333333 23311 1
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeec-cc-CHHHHHHHHHHcCCcEEEEEEEc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLY-RM-DYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~-~~-dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
+....... ..|+..+...+..... ...+.++++.||..+ .. .+..+++.+.....+.+......
T Consensus 64 -~~~~~~~~---------~~~~~~~~~~~~~~~~----~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~ 129 (255)
T d1vica_ 64 -VCMTSVNH---------NSGTERLAEVVEKLAI----PDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKI 129 (255)
T ss_dssp -EEECCCSS---------CCHHHHHHHHHHHTTC----CTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred -cceeeecc---------CCcchhhHHHHHHhhc----cCCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeec
Confidence 22222111 1345444443333222 345778889999943 33 37788888888777766665544
Q ss_pred cCC---cCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 251 DES---RASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 251 ~~~---~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
... ..........++++++..+.+.+........... .-.........+....|+|+|++..+..+... .+.
T Consensus 130 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~ 204 (255)
T d1vica_ 130 HDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNL----QDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQW-APT 204 (255)
T ss_dssp CCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTC----SCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHS-CCC
T ss_pred cchhhccCccceeeeeccCCcccccccccccccchhhhhc----cchhhcccccchheeeeeecccHHHHhhhhcc-CCC
Confidence 321 1122334566788888888877654311110000 00001111245677899999999998766432 121
Q ss_pred CCChhh--chHhhhhcCCcEEEEEecc-eeeecCChhhHHHhchhhc
Q 043870 328 ANDFGS--EVIPMATKDFNVQAYLFND-YWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 328 ~~d~~~--dil~~li~~~~V~~~~~~~-~w~dIgt~~d~~~An~~ll 371 (526)
..+..+ +.++.+-.+.++..+..+. .+.||||++||..|+..+.
T Consensus 205 ~le~~e~le~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~ilk 251 (255)
T d1vica_ 205 QLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILA 251 (255)
T ss_dssp HHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHH
T ss_pred hhHHHHhHHHHHHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHHHH
Confidence 111111 2233344577888887765 4789999999999987663
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.43 E-value=4.2e-12 Score=120.99 Aligned_cols=229 Identities=14% Similarity=0.192 Sum_probs=142.2
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
+.-+||+|.|.++|+. .|+|++++|+ |||+|+++++.++ ++++|+|++.... +.+... .+ +
T Consensus 2 k~i~iIpAR~~SkRl~------~Knl~~i~Gk-Pli~~~i~~a~~~~~~d~Iiv~td~~~--i~~~~~-~~--------~ 63 (245)
T d1h7ea_ 2 KAVIVIPARYGSSRLP------GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDDPR--VEQAVQ-AF--------G 63 (245)
T ss_dssp CEEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESCHH--HHHHHH-HT--------T
T ss_pred CEEEEEcCCCCCcCCC------CccccccCCc-cHHHHHHHHHHhCCCCCeEEEeccccc--chhhhh-hc--------C
Confidence 4679999999999986 5999999999 9999999999987 5888888887543 223322 22 1
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeec-cc-CHHHHHHHHHHcCCcEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLY-RM-DYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~-~~-dl~~ll~~h~~~~ad~ti~~~ 248 (526)
.++...... ..++...+..+...+. .+.++++.||..+ .. .+..+++.+............
T Consensus 64 ---~~~~~~~~~--------~~~~~~~~~~~~~~~~------~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~ 126 (245)
T d1h7ea_ 64 ---GKAIMTRND--------HESGTDRLVEVMHKVE------ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLC 126 (245)
T ss_dssp ---CEEEECCSC--------CSSHHHHHHHHHHHSC------CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred ---ceEEEecCc--------cccccHHHHHHHHhcC------CCEEEEecchhhhcccccchhhhhcccccccccccccc
Confidence 222221111 1345566666665554 3778889999944 33 377778777766554333332
Q ss_pred EccC--CcCC-CceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhC
Q 043870 249 PVDE--SRAS-DFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHY 325 (526)
Q Consensus 249 ~~~~--~~~~-~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~ 325 (526)
.... .... ....+.....+.+..+...+..... ......+...+|+|.|+++.|..+... .
T Consensus 127 ~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~g~~~~~~~~l~~~~~~-~ 190 (245)
T d1h7ea_ 127 HAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPR---------------NAEKARYLKHVGIYAYRRDVLQNYSQL-P 190 (245)
T ss_dssp EEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCT---------------TGGGCCEEEEEEEEEEEHHHHHHGGGS-C
T ss_pred cccccccccCCcceeeccchhhhhhhhhhhhhhhhh---------------cccccccceeeeeEEeeeccccccccc-c
Confidence 2221 1111 1222334445566666655543211 011145677889999999988765321 1
Q ss_pred CCCCChhh--chHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhc
Q 043870 326 PEANDFGS--EVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 326 ~~~~d~~~--dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll 371 (526)
+......+ |.++.+-.+.++.++..+..|.+|||++||..|+..+.
T Consensus 191 ~s~~e~~e~ie~lr~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~ 238 (245)
T d1h7ea_ 191 ESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMA 238 (245)
T ss_dssp CCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHH
T ss_pred CChhhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 21111111 23443335789999888888999999999999987664
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.41 E-value=4e-13 Score=130.50 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=90.1
Q ss_pred ccCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee-eceEECCCcEECCCCEEe------------ceEEEC
Q 043870 378 HFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELK------------DTMMMG 443 (526)
Q Consensus 378 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~------------~~v~~~ 443 (526)
..++|++.|...+.++|.|+|.. ++.|+++|.|++ +.| .++.||+++.|.++|.|. ..+.+|
T Consensus 7 AiI~~~a~Ig~~V~IG~~~vIg~----~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig 82 (259)
T d1j2za_ 7 AIISPKAEINKGVEIGEFCVIGD----GVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG 82 (259)
T ss_dssp CEECTTSEECTTCEECTTCEECT----TCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred CEECCCCEECCCCEECCCCEECC----CCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEec
Confidence 34455555555555555555522 355566666653 333 356666666666666653 122333
Q ss_pred Ccccchh-HHHHHHhhCCCcceEECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECC
Q 043870 444 ADYYQTE-AEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLK 516 (526)
Q Consensus 444 ~~~~~~~-~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~ 516 (526)
.+..-.+ ..+...-..+...+.||+++.|.+ ++|++++.||+++++.+...+..+.+++++++|+.+++ .||+
T Consensus 83 ~~~~i~~~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv~IG~ 162 (259)
T d1j2za_ 83 EDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAK 162 (259)
T ss_dssp SSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECT
T ss_pred cccccccccccccccccccccccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeecccEecc
Confidence 2211100 000000001112378999999985 99999999999999999999999999999999998876 6788
Q ss_pred CCEECCCccC
Q 043870 517 NTTIKDGTII 526 (526)
Q Consensus 517 ~~~i~~gt~i 526 (526)
+++||+||+|
T Consensus 163 ~a~IgagSvV 172 (259)
T d1j2za_ 163 GCMIAGKSAL 172 (259)
T ss_dssp TCEECTTCEE
T ss_pred ceeeeeeeee
Confidence 8888888764
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=8.7e-13 Score=120.76 Aligned_cols=109 Identities=12% Similarity=0.183 Sum_probs=75.7
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
..+.|||||||.|+||+ ..||+|++++|+ |||+|+++.+... +.+|+|+++.+.+.. . .++
T Consensus 2 ~~i~~iILAgG~ssRmG----~~~K~ll~~~g~-~ll~~~l~~l~~~-~~~ivv~~~~~~~~~-~----~~~-------- 62 (188)
T d1e5ka_ 2 TTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMTQ-LSHVVVNANRHQEIY-Q----ASG-------- 62 (188)
T ss_dssp CSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHHH-CSCEEEECSSSHHHH-H----TTS--------
T ss_pred CceeEEEEcCCCCcCCC----CCCcccCEECCE-ehhHHHHhhhccc-ccccccccCccHHhh-h----hcC--------
Confidence 45899999999999998 248999999999 9999999998876 677888887664321 1 110
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccCH-HHHHH
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMDY-MDFVQ 234 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~dl-~~ll~ 234 (526)
+.+..+.... ..+...++..+..... .+.+++++||+ +...++ ..+++
T Consensus 63 ---~~v~~d~~~~-------~~~~~~g~~~~~~~~~------~~~vlv~~~D~P~i~~~~i~~L~~ 112 (188)
T d1e5ka_ 63 ---LKVIEDSLAD-------YPGPLAGMLSVMQQEA------GEWFLFCPCDTPYIPPDLAARLNH 112 (188)
T ss_dssp ---CCEECCCTTC-------CCSHHHHHHHHHHHCC------SSEEEEEETTCTTCCTTHHHHHHH
T ss_pred ---CCcccccccc-------ccchhHHHHHHHHhcc------cceEEEeccCCCCCCHHHHHHHHH
Confidence 2222221111 1456677776655443 38899999999 667774 44443
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=99.40 E-value=6.1e-14 Score=133.38 Aligned_cols=120 Identities=14% Similarity=0.150 Sum_probs=89.6
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
|+..|||||||.|+||++++. .||+|+||+|+ |||+|+++++.++|+++|+|++++..... .
T Consensus 1 M~~~avIlA~G~~~r~~r~g~-~~K~L~~i~Gk-pli~~~~~~l~~~~~~~vvv~~~~~~~~~-------~--------- 62 (231)
T d2dpwa1 1 MRPSAIVLAGGKEAWAERFGV-GSKALVPYRGR-PMVEWVLEALYAAGLSPVYVGENPGLVPA-------P--------- 62 (231)
T ss_dssp CCCEEEEECCCBCSGGGTTTC-SBGGGSEETTE-ETHHHHHHHHHHTTCEEEEESCCSSCSSC-------C---------
T ss_pred CCceEEEECCCCCCCCCCCCC-CCceeeEECCe-eHHHHHHHHHHhcCCCeEEeeeeccccce-------e---------
Confidence 356899999999999998873 48999999999 99999999999999999999887653210 0
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~~ 248 (526)
.. .. . +..|..++++.++..++ +++++++||. +++.+ +..+++.+. +.+..+.+.
T Consensus 63 ---~~-~~--~--------~~~~~~~~v~~al~~~~-------~~~lv~~~D~P~i~~~~i~~l~~~~~--~~~~~~~~~ 119 (231)
T d2dpwa1 63 ---AL-TL--P--------DRGGLLENLEQALEHVE-------GRVLVATGDIPHLTEEAVRFVLDKAP--EAALVYPIV 119 (231)
T ss_dssp ---SE-EE--C--------CCSSHHHHHHHHHHTCC-------SEEEEEETTCTTCCHHHHHHHHHHCC--SCSEEEEEE
T ss_pred ---ee-ec--c--------cchHHHHHHHHHHHhhc-------CceEEeeCCCccCCHHHHHHHHHHhh--hcCceEEEE
Confidence 11 11 1 12589999999887764 7899999999 55554 777776543 345555555
Q ss_pred Ecc
Q 043870 249 PVD 251 (526)
Q Consensus 249 ~~~ 251 (526)
+.+
T Consensus 120 ~~~ 122 (231)
T d2dpwa1 120 PKE 122 (231)
T ss_dssp EHH
T ss_pred ecc
Confidence 443
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=99.28 E-value=1.2e-11 Score=115.59 Aligned_cols=121 Identities=16% Similarity=0.219 Sum_probs=84.7
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
+.+||||||.|+||+ .+.||+|++++|+ |||+|+++++.+.. +++|+|+... . +++.. + ...
T Consensus 2 is~IILAaG~g~Rmg---~~~pK~~~~i~gk-pii~~~l~~~~~~~~~~~Ivvv~~~-~----~~~~~-~--~~~----- 64 (205)
T d1w55a1 2 MSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSSN-I----TYMKK-F--TKN----- 64 (205)
T ss_dssp EEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEESC-H----HHHHT-T--CSS-----
T ss_pred eEEEEeCCccCeeCC---cCCCceeEEECCE-EHHHHHHHHHHhhcccccccccccc-c----ccccc-c--ccc-----
Confidence 679999999999998 6789999999999 99999999999875 6777666543 2 22221 1 111
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~~~ 249 (526)
+.++.. . ....+|++.++..++. +.+++..||. +++.+ +.++++.+.+ .++.+.+.+
T Consensus 65 --~~~v~G--g---------~~r~~Sv~~gl~~~~~------~~VlIhd~~rP~i~~~~i~~li~~~~~--~~~~i~~~~ 123 (205)
T d1w55a1 65 --YEFIEG--G---------DTRAESLKKALELIDS------EFVMVSDVARVLVSKNLFDRLIENLDK--ADCITPALK 123 (205)
T ss_dssp --SEEEEC--C---------SSHHHHHHHHHTTCCS------SEEEEEETTCTTCCHHHHHHHHTTGGG--CSEEEEEEC
T ss_pred --cccccc--c---------cchhhhhhhhhhhhhh------cceeeeccCcccCcHHHHHHHHhhhhc--ccccccccc
Confidence 233321 1 2356888888877653 7789999999 66665 6777776544 345666655
Q ss_pred cc
Q 043870 250 VD 251 (526)
Q Consensus 250 ~~ 251 (526)
+.
T Consensus 124 ~~ 125 (205)
T d1w55a1 124 VA 125 (205)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=99.26 E-value=5.9e-11 Score=110.97 Aligned_cols=216 Identities=15% Similarity=0.130 Sum_probs=134.5
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
+.-|||+|.|.++|+. .|+|++++|+ |||+|+++++.+++ +++|+|.+. .+.+.+.+ +.|+.
T Consensus 4 ~~iaiIpar~~S~R~p------~K~l~~i~gk-pLi~~~i~~~~~s~~~~~Iiv~td--~~~i~~i~-~~~~~------- 66 (225)
T d1eyra_ 4 QNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTD--GGLIAEEA-KNFGV------- 66 (225)
T ss_dssp EEEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHH-HHTTC-------
T ss_pred CEEEEEccCCCCcCCC------CccccccCCe-EHHHHHHHHHHHcCCCceEEEeec--cchhhhhh-hhhcc-------
Confidence 3468999999999986 5999999999 99999999999997 588887774 33444433 33311
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti~~~ 248 (526)
. + +....... ....++.+.++.+...+. ...+.++.+.||. +.+. ++.+++..+...+.+..+.+.
T Consensus 67 -~-~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~ 134 (225)
T d1eyra_ 67 -E-V-VLRPAELA-----SDTASSISGVIHALETIG----SNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSAC 134 (225)
T ss_dssp -E-E-EECCHHHH-----STTCCHHHHHHHHHHHHT----CCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEE
T ss_pred -e-e-eeeccccc-----cccccchhhccccccccc----cccceEEEeeccccccccccccccceeeccccccccceee
Confidence 1 1 12211111 011345666766665554 3458899999999 4444 488999888877777666665
Q ss_pred EccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCC
Q 043870 249 PVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA 328 (526)
Q Consensus 249 ~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~ 328 (526)
..... .+..+...+++.+..+........ ........+..+.++|+++++.|... .
T Consensus 135 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~y~~~g~iy~~~~~~l~~~-~------ 190 (225)
T d1eyra_ 135 PMEHH---PLKTLLQINNGEYAPMRHLSDLEQ--------------PRQQLPQAFRPNGAIYINDTASLIAN-N------ 190 (225)
T ss_dssp ECSSC---TTSCEEECSSSCEEESSCGGGGTS--------------CGGGSCCEEEEEEEEEEEEHHHHHHH-T------
T ss_pred ccccc---cccccccccccccccccccccccc--------------ccccCcceeeecceeEEeeHHHHHHc-C------
Confidence 54321 133334445666555443322111 00111145678899999999977532 0
Q ss_pred CChhhchHhhhhcCCcEEEEEecc-eeeecCChhhHHHhchhh
Q 043870 329 NDFGSEVIPMATKDFNVQAYLFND-YWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 329 ~d~~~dil~~li~~~~V~~~~~~~-~w~dIgt~~d~~~An~~l 370 (526)
.+ -..++..+..+. .-+||+|++||..|+..+
T Consensus 191 -~~---------~~~~~~~~~i~~~~~~dIdt~eDl~~ae~i~ 223 (225)
T d1eyra_ 191 -CF---------FIAPTKLYIMSHQDSIDIDTELDLQQAENIL 223 (225)
T ss_dssp -SS---------CCSSCEEEECCTTTTCCCCSHHHHHHHHHHH
T ss_pred -Cc---------cCCCeEEEEcCccceECCCCHHHHHHHHHHh
Confidence 00 112344444432 357999999999998654
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.21 E-value=3.5e-11 Score=112.83 Aligned_cols=112 Identities=15% Similarity=0.300 Sum_probs=69.6
Q ss_pred ccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee-----eceEECCCcEECCCCEEece--------------------
Q 043870 386 IFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV-----EHSIVGIRSRLEYGVELKDT-------------------- 439 (526)
Q Consensus 386 i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v-----~~s~ig~~~~I~~~~~i~~~-------------------- 439 (526)
|.+++.+.|.+.|. .++.||++|+|+. |.+ ....||++|.|+++|.|+..
T Consensus 25 I~~~a~I~p~A~i~----g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~ 100 (210)
T d1qrea_ 25 IDPTAYIDPQASVI----GEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGK 100 (210)
T ss_dssp ECTTCEECTTCEEE----ESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTE
T ss_pred cCCCCEECCCCEEe----cceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCcccccccc
Confidence 44444445544442 2456666666664 333 25788888888888888543
Q ss_pred ---EEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE---
Q 043870 440 ---MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT--- 512 (526)
Q Consensus 440 ---v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~--- 512 (526)
+.+|++ +.||+++.|. +|.||++|.||.+++|.++ +++++++|++++.
T Consensus 101 ~~~~~IG~~------------------v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~-------~IG~~~vIg~~svv~g 155 (210)
T d1qrea_ 101 EYAVYIGNN------------------VSLAHQSQVHGPAAVGDDTFIGMQAFVFKS-------KVGNNCVLEPRSAAIG 155 (210)
T ss_dssp EESEEECTT------------------CEECTTCEEEEEEEECTTCEECTTCEEEEE-------EECTTCEECTTCEEES
T ss_pred ccceeeccc------------------cccccccccccCCcccCCcEeeCCcccccc-------ccccCcEEecCcEecC
Confidence 333333 5556666664 4778888888888777653 4677777765544
Q ss_pred -EECCCCEECCCccC
Q 043870 513 -VVLKNTTIKDGTII 526 (526)
Q Consensus 513 -~i~~~~~i~~gt~i 526 (526)
+|++++.|++|+++
T Consensus 156 ~~i~~g~~I~~g~~v 170 (210)
T d1qrea_ 156 VTIPDGRYIPAGMVV 170 (210)
T ss_dssp CEECTTBEECTTCEE
T ss_pred cEeCCCcEECCCcEE
Confidence 45677777777653
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.10 E-value=2.7e-10 Score=110.13 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=25.3
Q ss_pred eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 475 CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 475 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
++||+++.|+.++.++....+.....+..++.+..+ +.||+++.||.+++|
T Consensus 104 t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~-v~Ig~~v~IG~~s~I 154 (259)
T d1j2za_ 104 TLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGH-IEIGDYVNIGGLTAI 154 (259)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECSSCEECTTCEE
T ss_pred ccccCceEEeccccccceecccceeeeecccccccc-ccccccceecceeee
Confidence 444444444444444444333344344444444332 356777777777654
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=1.1e-09 Score=102.52 Aligned_cols=217 Identities=12% Similarity=0.166 Sum_probs=127.2
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
|+++.|||+|.|.++||. -|+|++++|+ |||+|+++++.+++ +++|+|.+.. +.+.+... .|+
T Consensus 1 ~~ki~aiIpaR~~S~Rlp------~K~l~~i~gk-pLi~~~i~~~~ks~~id~Iivstd~--~~i~~~~~-~~~------ 64 (228)
T d1qwja_ 1 PPHLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVSTDH--DEIENVAK-QFG------ 64 (228)
T ss_dssp CCCEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEESC--HHHHHHHH-HTT------
T ss_pred CCCEEEEeccCCCCCCCC------CcchhhhCCe-eHHHHHHHHHHhcCCcceEEEecch--hhhhhhhh-hcC------
Confidence 357999999999999995 5999999999 99999999999886 6888887753 34444443 331
Q ss_pred cCCCeEEEE-ecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEE
Q 043870 169 FGDGFVEVL-AATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISV 245 (526)
Q Consensus 169 ~~~~~v~vl-~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti 245 (526)
+.+. ......++ .....+.+..+.... ...+.++++.+|. +... ++.+++..+.+.+.+..+
T Consensus 65 -----~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~-----~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~ 129 (228)
T d1qwja_ 65 -----AQVHRRSSETSKD-----SSTSLDAIVEFLNYH-----NEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVF 129 (228)
T ss_dssp -----CEEEECCGGGSST-----TCCHHHHHHHHHTTC-----TTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEE
T ss_pred -----ccccccccccccc-----cchhhhhhhhccccc-----cccceeeeecccccccCchhhhhhhhhhhccCccccc
Confidence 1111 11111110 123555555544322 2357788888998 4333 589999999888888777
Q ss_pred EEEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhC
Q 043870 246 CCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHY 325 (526)
Q Consensus 246 ~~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~ 325 (526)
.+....... +..+.....+........+... ...+. ....+..+.++|+++++++. .
T Consensus 130 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------------~~~qd-~~~~y~~ng~~~~~k~~~~~----~-- 186 (228)
T d1qwja_ 130 SVVRRHQFR---WSEIQKGVREVTEPLNLNPAKR-------------PRRQD-WDGELYENGSFYFAKRHLIE----M-- 186 (228)
T ss_dssp EEEEECCCE---ECCCCSSTTCCCCBSSSBTTBC-------------CCTTT-SCCEEEEEEEEEEEEHHHHH----T--
T ss_pred ccccccccc---chhhhhhccccccchhhhhhhc-------------ccccc-ccceeeeeeEEEEEeHHHHh----h--
Confidence 665543211 1111100011100000000000 00000 01345677888888877664 1
Q ss_pred CCCCChhhchHhhhhcCCcEEEEEecc-eeeecCChhhHHHhchhhcC
Q 043870 326 PEANDFGSEVIPMATKDFNVQAYLFND-YWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 326 ~~~~d~~~dil~~li~~~~V~~~~~~~-~w~dIgt~~d~~~An~~ll~ 372 (526)
. .+ ...++..|..+. .-+||+|++||..|+..+..
T Consensus 187 ~---~~---------~~~k~~~~~i~~~~~idIDt~eD~~~Ae~~l~k 222 (228)
T d1qwja_ 187 G---YL---------QGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (228)
T ss_dssp T---CS---------SCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred C---Cc---------CCCCEEEEEcCccceECCCCHHHHHHHHHHHHH
Confidence 0 11 234566666653 35799999999999887754
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.08 E-value=2.8e-10 Score=110.23 Aligned_cols=63 Identities=16% Similarity=0.246 Sum_probs=38.2
Q ss_pred eEECCCCEEe-ceEECCC-------CEECCCcEEccCCCcCCccccCCCeEEccCc-----EEECCCCEECCCccC
Q 043870 464 VGIGRDTKIK-NCIIDKN-------AKIGKNVIIANKDGVEEAERPSDGFYIRSGI-----TVVLKNTTIKDGTII 526 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~-------~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~-----~~i~~~~~i~~gt~i 526 (526)
+.||+++.|+ +|.|..+ ++||+++.|.+...+..++.+|+++.|.+++ +.||++|.||+++.|
T Consensus 84 v~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i 159 (262)
T d2jf2a1 84 VEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAV 159 (262)
T ss_dssp EEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred EEECCeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCcee
Confidence 5666666665 2444332 4566666666666666666666666665332 366777777777653
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.07 E-value=2e-09 Score=108.97 Aligned_cols=218 Identities=11% Similarity=0.149 Sum_probs=141.4
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHh----cCC-cEEEEEec-cChhHHHHHhhhcccC
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCIN----SGI-KKIYILTQ-FNSQSLNRHISRTYNL 163 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~----~gi-~~I~Iv~~-~~~~~l~~~l~~~~~~ 163 (526)
..++.+|+||||.||||+ ...||+++||++..++++..++++.. .|. -.++|.++ ...+.+.+++.+...+
T Consensus 72 l~kvavv~LaGG~GTRLG---~~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~~~~f 148 (378)
T d2icya2 72 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNS 148 (378)
T ss_dssp HTTEEEEEEECCBSGGGT---CCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGTTS
T ss_pred hCCEEEEEecCCcccccC---CCCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHhccC
Confidence 356899999999999997 67899999997433999999999874 232 24677776 4556788888764433
Q ss_pred CCCccc-CCCeEEEEec------ccccCcCCCcc-ccChHHHHHHHHH--HhhhhccCCCCeEEEEcCCeecccCHHHHH
Q 043870 164 GDGMNF-GDGFVEVLAA------TQRQGESGKKW-FQGTADAVRQFIW--MFEDAKHRNIENILILSGDHLYRMDYMDFV 233 (526)
Q Consensus 164 ~~~~~~-~~~~v~vl~~------~~~~~~~~~~~-~~Gt~~al~~~~~--~i~~~~~~~~e~~lil~gD~l~~~dl~~ll 233 (526)
+..+.+ ....+..+.. ..........| |.|+++....... .+++...+..+.+++.+.|.+....-..++
T Consensus 149 g~~i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~~l 228 (378)
T d2icya2 149 NVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTIL 228 (378)
T ss_dssp SSCEEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHHH
T ss_pred CCceEEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchHHH
Confidence 322111 1111111100 00000011234 5688877765443 244444578899999999998776667788
Q ss_pred HHHHHcCCcEEEEEEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEc
Q 043870 234 QHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFK 313 (526)
Q Consensus 234 ~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~ 313 (526)
-.|.++++++++-+.+...+....-.++..|..-+|+++.|.|....... .....-.+.+++.++|+
T Consensus 229 G~~~~~~~~~~~kvv~Kt~~dek~G~l~~~dg~~~vvEyse~p~e~~~~~-------------~~~~~~~~~N~nn~~~~ 295 (378)
T d2icya2 229 KHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEF-------------KSIEKFKIFNTNNLWVN 295 (378)
T ss_dssp HHHHHHTCSEEEEEEECCTTCCSSCEEEEETTEEEEECGGGSCGGGHHHH-------------HSSSSCCEEEEEEEEEE
T ss_pred HHHHhcCCcceeEEEecCCCCCceeEEEEECCceeeeehhcCChhHHhhh-------------cCCcCcceeeeeeeeee
Confidence 88999999999988877654433334455565567888888886531100 00002235799999999
Q ss_pred HHHHHHHHHh
Q 043870 314 TEVLLKVLRW 323 (526)
Q Consensus 314 ~~~l~~ll~~ 323 (526)
-+.+.++++.
T Consensus 296 l~~l~~~~~~ 305 (378)
T d2icya2 296 LKAIKKLVEA 305 (378)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999888764
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.06 E-value=3.2e-10 Score=103.95 Aligned_cols=56 Identities=25% Similarity=0.379 Sum_probs=36.2
Q ss_pred EEeceEECCCCEECCCcEEccCCC-cCCccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 471 KIKNCIIDKNAKIGKNVIIANKDG-VEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 471 ~i~~~iI~~~~~Ig~~~~i~~~~~-v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
.+.++.++.++.++.+++...... ......++++++|+.+++ .||++++||+|++|
T Consensus 114 ~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~~~I~~gv~IG~~s~IgagsvV 175 (196)
T d1g97a1 114 YIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTI 175 (196)
T ss_dssp EEESEEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSCEECTTCEECTTCEE
T ss_pred EecceeecceeecCCCeEEeecceeeeeeeEEecCCEEeeeeEEcCCcEECCCCEECCCCEE
Confidence 334455555666666665544333 335666788888887765 67888888888864
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=99.03 E-value=1.2e-09 Score=98.77 Aligned_cols=116 Identities=22% Similarity=0.344 Sum_probs=75.3
Q ss_pred CCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee----eceEECCCcEECCCCEEece----EEECCcccchhH
Q 043870 381 DPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV----EHSIVGIRSRLEYGVELKDT----MMMGADYYQTEA 451 (526)
Q Consensus 381 ~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v----~~s~ig~~~~I~~~~~i~~~----v~~~~~~~~~~~ 451 (526)
+....|.+++.+.|.+.|.+ ++.||++|.|++ |.+ ..+.||.++.+++++.+..+ +++|++
T Consensus 10 ~~~~~Ig~~~~I~~~a~I~~----~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~------ 79 (172)
T d1xhda_ 10 EKKPKIASSAFIADYVTITG----DVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDD------ 79 (172)
T ss_dssp TBCCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTT------
T ss_pred CcCCEECCCcEECCCCEEeC----CEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeee------
Confidence 34444555555555555532 467777777764 333 34688888888888887654 444443
Q ss_pred HHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 452 EIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 452 ~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
+.++.++.+.++.|++++.||.+++|... .++|++++|+.|+++ .++..|+++++
T Consensus 80 ------------~~~~~~~~~~~~~i~~~~~ig~~~~i~~g------v~IG~~~~IgagsvV-~~~~~i~~~~v 134 (172)
T d1xhda_ 80 ------------VTVGHQVILHSCHIKKDALIGMGSIILDG------AEIGEGAFIGAGSLV-SQGKKIPPNTL 134 (172)
T ss_dssp ------------CEECTTCEEESCEECTTCEECTTCEECTT------CEECTTCEECTTCEE-CTTCEECTTEE
T ss_pred ------------eeeeeeecccccccccceEEecccEeeCC------cEEcCcccccceEEE-eeCeEECCCeE
Confidence 45566666666777777777777777654 467778888877655 66667777765
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.02 E-value=1.1e-09 Score=102.41 Aligned_cols=97 Identities=10% Similarity=0.156 Sum_probs=75.0
Q ss_pred ccCCCCCcccCCCCCCCCeee-cCeeEe-----eeEECCCCEEcc-eee------------------------eceEECC
Q 043870 378 HFYDPQKPIFTSPRFLPPSKI-EKCRVQ-----DSIISHGCFLRE-CSV------------------------EHSIVGI 426 (526)
Q Consensus 378 ~~~~~~~~i~~~~~~~~~~~i-~~~~i~-----~s~Ig~~~~i~~-~~v------------------------~~s~ig~ 426 (526)
.+++|.+.+...+.++++++| .+|.|. ...||++|.|++ |.+ +.++||+
T Consensus 29 a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~ 108 (210)
T d1qrea_ 29 AYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGN 108 (210)
T ss_dssp CEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECT
T ss_pred CEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccceeecc
Confidence 355555555555567777777 566663 256777777764 333 3588999
Q ss_pred CcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccC
Q 043870 427 RSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 427 ~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~ 492 (526)
++.||.+|.|.+.+.+|++ +.||.++.|.+|.||++|.|+.++++.++
T Consensus 109 ~v~IG~~~~i~g~~~IGd~------------------~~IG~gs~i~~~~IG~~~vIg~~svv~g~ 156 (210)
T d1qrea_ 109 NVSLAHQSQVHGPAAVGDD------------------TFIGMQAFVFKSKVGNNCVLEPRSAAIGV 156 (210)
T ss_dssp TCEECTTCEEEEEEEECTT------------------CEECTTCEEEEEEECTTCEECTTCEEESC
T ss_pred ccccccccccccCCcccCC------------------cEeeCCccccccccccCcEEecCcEecCc
Confidence 9999999999988889987 89999999999999999999999988764
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=6.9e-10 Score=87.07 Aligned_cols=61 Identities=15% Similarity=0.242 Sum_probs=39.1
Q ss_pred eEECCCCEEcc-eeee-ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEE
Q 043870 406 SIISHGCFLRE-CSVE-HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKI 483 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v~-~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~I 483 (526)
+.||++|.|++ +.++ ++.||++|+||++|.|+++.++.+ +.|++++.|.+|+|+++|+|
T Consensus 15 v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~-------------------~~I~~~s~i~~~~Ig~~~~I 75 (78)
T d1fxja1 15 LTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDD-------------------CEISPYTVVEDANLAAACTI 75 (78)
T ss_dssp EEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTT-------------------CEECTTCEEESEEECTTCEE
T ss_pred EEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCC-------------------CEEcCCcEEECCEECCCCEE
Confidence 44555555543 3332 567777777777777776665554 67777777777777777777
Q ss_pred CC
Q 043870 484 GK 485 (526)
Q Consensus 484 g~ 485 (526)
|+
T Consensus 76 GP 77 (78)
T d1fxja1 76 GP 77 (78)
T ss_dssp SC
T ss_pred Cc
Confidence 65
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=98.88 E-value=8.2e-09 Score=93.02 Aligned_cols=100 Identities=16% Similarity=0.356 Sum_probs=67.7
Q ss_pred EECCCCEEcc-eee-eceEECCCcEECCCCEEece---EEECCcccchhHHHHHHhhCCCcceEECCCCEEec-----eE
Q 043870 407 IISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDT---MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-----CI 476 (526)
Q Consensus 407 ~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-----~i 476 (526)
.||++|+|++ +.| .++.||++|.|+++|+|... +.+|++ +.+++++.+.. ++
T Consensus 14 ~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~------------------~~i~~~~~~~~~~~~~~~ 75 (172)
T d1xhda_ 14 KIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDR------------------VNVQDQCTLHQSPQYPLI 75 (172)
T ss_dssp EECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECCTTCCEE
T ss_pred EECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccce------------------eeeeeeceeccCCcCCee
Confidence 4555555553 333 46888888888888888654 456655 66666666652 67
Q ss_pred ECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 477 IDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 477 I~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
|++++.++.++.+.+. .+.+...++.++.|..++ +||+++.|++||+|
T Consensus 76 ig~~~~~~~~~~~~~~-~i~~~~~ig~~~~i~~gv-~IG~~~~IgagsvV 123 (172)
T d1xhda_ 76 LEDDVTVGHQVILHSC-HIKKDALIGMGSIILDGA-EIGEGAFIGAGSLV 123 (172)
T ss_dssp ECTTCEECTTCEEESC-EECTTCEECTTCEECTTC-EECTTCEECTTCEE
T ss_pred eeeeeeeeeeeccccc-ccccceEEecccEeeCCc-EEcCcccccceEEE
Confidence 7777777777777644 466666667777776664 45888888888864
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.85 E-value=4.1e-09 Score=95.10 Aligned_cols=115 Identities=19% Similarity=0.265 Sum_probs=62.9
Q ss_pred CCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee----eceEECCCcEECCCCEEeceE----EECCcccchhHHH
Q 043870 383 QKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV----EHSIVGIRSRLEYGVELKDTM----MMGADYYQTEAEI 453 (526)
Q Consensus 383 ~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v----~~s~ig~~~~I~~~~~i~~~v----~~~~~~~~~~~~~ 453 (526)
+..|.+++.+.|.+.|.+ ++.||++|.|++ +.+ ..+.+++++.++..+.+..+. ..+..
T Consensus 10 ~~~I~~~~~I~~~a~I~g----~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~-------- 77 (173)
T d1v3wa_ 10 KPRIHPSAFVDENAVVIG----DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEY-------- 77 (173)
T ss_dssp CCEECTTCEECTTSEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSS--------
T ss_pred CCEECcCcEECCCCEEeC----ceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcc--------
Confidence 334455555555555432 466777777764 333 345677777777777664321 12211
Q ss_pred HHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 454 AALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 454 ~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
+.+.......++.|+++|.||.+++|.. ..+++++++|+.|+++ .++..|++++++
T Consensus 78 ----------~~~~~~~~~~~~~Ig~~~~ig~~~~i~~------gv~Ig~~~vIgagsvV-~~~~~i~~~~iv 133 (173)
T d1v3wa_ 78 ----------VTIGHNAMVHGAKVGNYVIIGISSVILD------GAKIGDHVIIGAGAVV-PPNKEIPDYSLV 133 (173)
T ss_dssp ----------CEECTTCEEESCEECSSEEECTTCEECT------TCEECSSEEECTTCEE-CTTCEECTTEEE
T ss_pred ----------eeeeeeeeeeeeecCCcccccceeeecC------CEEEcceeEEcCCcEE-eCCeEeCCCCEE
Confidence 2233333333455555555555555543 3467777777777554 677777777653
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=5.2e-09 Score=81.92 Aligned_cols=53 Identities=21% Similarity=0.385 Sum_probs=49.1
Q ss_pred ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEcc
Q 043870 421 HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIAN 491 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 491 (526)
++.||.++.|+++|.|++.+.+|++ +.||.||.|++|+|++|++|+++++|.+
T Consensus 14 ~v~IG~~~~I~~~~~i~g~~~IG~~------------------v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~ 66 (78)
T d1fxja1 14 TLTHGRDVEIDTNVIIEGNVTLGHR------------------VKIGTGCVIKNSVIGDDCEISPYTVVED 66 (78)
T ss_dssp EEEECSSCEECTTEEEEEEEEECTT------------------CEECTTCEEESCEECTTCEECTTCEEES
T ss_pred cEEECCCCEECCccEEeCCcEECCC------------------CEECCCeEEecCEECCCCEEcCCcEEEC
Confidence 6899999999999999999999987 8999999999999999999999999964
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=98.84 E-value=6.3e-09 Score=95.83 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=5.1
Q ss_pred eeecCChhh
Q 043870 354 WEDIGTIKS 362 (526)
Q Consensus 354 w~dIgt~~d 362 (526)
..-|+++..
T Consensus 50 ~iaIG~~~~ 58 (193)
T d3bswa1 50 FIAIGNNEI 58 (193)
T ss_dssp EECCSCHHH
T ss_pred EEEECCcHH
Confidence 345676653
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=98.82 E-value=6.9e-09 Score=95.56 Aligned_cols=11 Identities=18% Similarity=0.066 Sum_probs=4.7
Q ss_pred cCCCCCcccCC
Q 043870 379 FYDPQKPIFTS 389 (526)
Q Consensus 379 ~~~~~~~i~~~ 389 (526)
+++|++.+...
T Consensus 76 ~I~p~a~I~~~ 86 (193)
T d3bswa1 76 LIHKSALISPS 86 (193)
T ss_dssp EECTTCEECTT
T ss_pred ecCCCcEEeee
Confidence 44444444333
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.78 E-value=1.3e-08 Score=96.63 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=49.6
Q ss_pred eeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEE
Q 043870 405 DSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKI 483 (526)
Q Consensus 405 ~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~I 483 (526)
++.||+||+|.. +++||..+.||++|.|..++.+|..+.. -++.|+.|++||.|. +|.|-.++.|
T Consensus 131 gA~ig~~~midt----~a~vgs~aqIG~~vhis~g~~igGvlep----------~~~~p~iIed~~~IGa~s~v~egv~V 196 (274)
T d3tdta_ 131 GAYVDEGTMVDT----WATVGSCAQIGKNVHLSGGVGIGGVLEP----------LQANPTIIEDNCFIGARSEVVEGVIV 196 (274)
T ss_dssp TCEECTTCEECT----TEEECTTCEECTTCEECTTCEECCSBTT----------BCSSCCEECTTCEECTTCEECTTCEE
T ss_pred ccEEcCCcEEcc----cceecceeEECCCeEECCCcEEEecccc----------CCCCCcEEecCcEeccCceEecCEEe
Confidence 477788888875 6777777777777777777766653211 345788888888887 3555444444
Q ss_pred CCCcEEccCCCcC
Q 043870 484 GKNVIIANKDGVE 496 (526)
Q Consensus 484 g~~~~i~~~~~v~ 496 (526)
|++++|+....+.
T Consensus 197 g~~avi~~gv~i~ 209 (274)
T d3tdta_ 197 EEGSVISMGVYLG 209 (274)
T ss_dssp CTTCEECTTCEEC
T ss_pred cCceEeccceEEe
Confidence 4444444443333
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=2.1e-08 Score=92.15 Aligned_cols=63 Identities=29% Similarity=0.400 Sum_probs=44.5
Q ss_pred eEECCCCEEe------ceEECCCCEECCCcEEccCCC-cCCccccCCCeEEccCc-----EEECCCCEECCCccC
Q 043870 464 VGIGRDTKIK------NCIIDKNAKIGKNVIIANKDG-VEEAERPSDGFYIRSGI-----TVVLKNTTIKDGTII 526 (526)
Q Consensus 464 ~~Ig~~~~i~------~~iI~~~~~Ig~~~~i~~~~~-v~~~~~~~~~~~I~~g~-----~~i~~~~~i~~gt~i 526 (526)
+.+|+++++. ++.+++++.++.+++..+..+ ......++++++|+.++ +.||++++|++||+|
T Consensus 102 ~~ig~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV 176 (201)
T d2oi6a1 102 ARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTV 176 (201)
T ss_dssp EEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEE
T ss_pred eeeCCCeEEceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCCcEECCCCEECCCCEE
Confidence 5666666665 466777888888877766554 33456778888887666 377888888888864
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=1.9e-08 Score=92.99 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=68.7
Q ss_pred cccCCCCCCCCeeec-CeeEeeeEECCCCEEcc-eee---eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhC
Q 043870 385 PIFTSPRFLPPSKIE-KCRVQDSIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAE 459 (526)
Q Consensus 385 ~i~~~~~~~~~~~i~-~~~i~~s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~ 459 (526)
.+...+.|.||++++ +. +..||++|+|+. |.+ ..+.||++|.|+++|.|.......+...... -..
T Consensus 56 ~iG~~~~I~p~~~i~~G~---nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~------~~~ 126 (200)
T d1krra_ 56 TVGENAWVEPPVYFSYGS---NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKN------GEM 126 (200)
T ss_dssp BCCSSCEECSCEEESCST---TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTT------CCB
T ss_pred cCCCCCEEcCCEEEecCC---ccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceeccccc------cee
Confidence 355667778888773 21 356777777763 555 4578999999999999977654443211100 001
Q ss_pred CCcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCC
Q 043870 460 GKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 460 ~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~ 497 (526)
...|+.||++|.|. +|+|.++++||++|+|+..+.|..
T Consensus 127 ~~~~v~Igd~v~IG~~~~I~~Gv~IG~~~vIgagSvV~k 165 (200)
T d1krra_ 127 YSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTK 165 (200)
T ss_dssp EECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred ecceEEEccCcccceeeecccccccCCCcEEeCCCEEee
Confidence 11358888888887 588888888888888887766654
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.76 E-value=1.5e-08 Score=92.33 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=21.4
Q ss_pred CCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eeeeceEECCCcEE
Q 043870 380 YDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRL 430 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I 430 (526)
+++++.|.+.+.++|++.|.+ ++.||++|.|+. +.++++.||+++.|
T Consensus 11 I~~~v~Ig~~~~I~~~vvI~~----~v~IG~~~~I~~~~~i~~~~IG~~~~I 58 (196)
T d1g97a1 11 IDIDVEIASEVQIEANVTLKG----QTKIGAETVLTNGTYVVDSTIGAGAVI 58 (196)
T ss_dssp ECTTCEECTTCEECTTCEEES----SCEECTTCEECTTCEEESCEECTTCEE
T ss_pred ECCCcEECCCCEECCCCEECC----CcEECCCceEcCceEeeeeecccCccc
Confidence 344444444444444444422 356666666654 33334444444443
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.75 E-value=4.6e-09 Score=91.03 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=70.6
Q ss_pred CCCCCCCeeecCeeEeeeEECCCCEEcc-eeeeceEECC-------------------CcEECCCCEEeceEEECCcccc
Q 043870 389 SPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVEHSIVGI-------------------RSRLEYGVELKDTMMMGADYYQ 448 (526)
Q Consensus 389 ~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~-------------------~~~I~~~~~i~~~v~~~~~~~~ 448 (526)
.+.++++|.|.++.+.+|.||++|.|++ +.|+++++.. +++||++|.|.++++..+
T Consensus 14 ~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~---- 89 (135)
T d1yp2a1 14 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKN---- 89 (135)
T ss_dssp EEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTT----
T ss_pred eCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCC----
Confidence 3568888888877888899999999984 6666666544 467888888876554433
Q ss_pred hhHHHHHHhhCCCcceEECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE
Q 043870 449 TEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT 512 (526)
Q Consensus 449 ~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~ 512 (526)
+.||+||.|.+ +.+.+.+++++++++.+.. ..+++++.|++|++
T Consensus 90 ---------------~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~-----vvIg~~~~I~~g~v 134 (135)
T d1yp2a1 90 ---------------ARIGDNVKIINKDNVQEAARETDGYFIKSGI-----VTVIKDALIPSGII 134 (135)
T ss_dssp ---------------CEECTTCEECCSSCCSCEEEGGGTEEEETTE-----EEECTTCEECTTCB
T ss_pred ---------------CEECCCcEECCCcccccceeeCCCEEECCCe-----EEECCCCEECcCcC
Confidence 78888888865 6667777777777776542 34566666666543
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.68 E-value=1.6e-08 Score=93.50 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=15.5
Q ss_pred ceEECCCcEECCCCEEe--ceEEECCc
Q 043870 421 HSIVGIRSRLEYGVELK--DTMMMGAD 445 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~--~~v~~~~~ 445 (526)
++.||+++.|+.+|.|. ..+.+|++
T Consensus 74 nv~IG~~~~I~~~~~I~~~~~i~IG~~ 100 (200)
T d1krra_ 74 NIHIGRNFYANFNLTIVDDYTVTIGDN 100 (200)
T ss_dssp TEEECSSCEECSCEEEECSSCEEECSS
T ss_pred ccEECCccEECceEEEecCCCcEeCCC
Confidence 56677777777777663 34555554
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.61 E-value=4.4e-08 Score=92.92 Aligned_cols=100 Identities=21% Similarity=0.276 Sum_probs=78.0
Q ss_pred CCCCCCCeeecCeeEeeeEECCCCEEcceee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEEC
Q 043870 389 SPRFLPPSKIEKCRVQDSIISHGCFLRECSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIG 467 (526)
Q Consensus 389 ~~~~~~~~~i~~~~i~~s~Ig~~~~i~~~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig 467 (526)
..|+.|++.+-. .++|++|+++-++.| ..+.||+++.|+.++.|+.|..+|++ +.|+
T Consensus 102 g~RvvPga~VR~----GayI~~~vVlmps~VNigA~ig~~~midt~a~vgs~aqIG~~------------------vhis 159 (274)
T d3tdta_ 102 GFRVVPPATVRQ----GAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VHLS 159 (274)
T ss_dssp CCEECTTCEEBT----TCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTT------------------CEEC
T ss_pred CEEeCCCceecc----CcEECCCcEEeeeEeccccEEcCCcEEcccceecceeEECCC------------------eEEC
Confidence 457778877744 588999998888777 68999999999999999999888886 8888
Q ss_pred CCCEEe---------ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccC
Q 043870 468 RDTKIK---------NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSG 510 (526)
Q Consensus 468 ~~~~i~---------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g 510 (526)
.|+.|. .++|++||.||+++.+.....+.+...++.|++|...
T Consensus 160 ~g~~igGvlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~~ 211 (274)
T d3tdta_ 160 GGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQS 211 (274)
T ss_dssp TTCEECCSBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred CCcEEEeccccCCCCCcEEecCcEeccCceEecCEEecCceEeccceEEecc
Confidence 888887 3679999999999998877555555555555555443
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=1.1e-07 Score=86.49 Aligned_cols=81 Identities=22% Similarity=0.301 Sum_probs=50.9
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCC---CcceEECCCCEEe-ceEECCCC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEG---KVPVGIGRDTKIK-NCIIDKNA 481 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~Ig~~~~i~-~~iI~~~~ 481 (526)
+.|+++|+|... ....||++|.|+++|.|......++. .....+ ..|+.||++|.|. +|+|.+++
T Consensus 79 ~~I~~~~~I~d~--~~I~IG~~~~Ig~~v~I~~~~~~~~~---------~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv 147 (182)
T d1ocxa_ 79 FFANFDCVMLDV--CPIRIGDNCMLAPGVHIYTATHPIDP---------VARNSGAELGKPVTIGNNVWIGGRAVINPGV 147 (182)
T ss_dssp EEECSSEEEECS--SCEEECTTCEECTTCEEECEECCSSH---------HHHTTTCBEECCEEECTTCEECTTCEECTTC
T ss_pred cEECCCcEEecC--CeEEECCCeEECcCceEeecccccce---------eeeeccceEcceeEECceEeeCceeeccCcE
Confidence 444555544320 14579999999999999887765542 111222 2357777777776 57777777
Q ss_pred EECCCcEEccCCCcCC
Q 043870 482 KIGKNVIIANKDGVEE 497 (526)
Q Consensus 482 ~Ig~~~~i~~~~~v~~ 497 (526)
+||++++|+....|..
T Consensus 148 ~IG~~~vIgagsvV~k 163 (182)
T d1ocxa_ 148 TIGDNVVVASGAVVTK 163 (182)
T ss_dssp EECTTCEECTTCEECS
T ss_pred EECCCCEECCCCEEcc
Confidence 7777777776655543
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.51 E-value=1.8e-07 Score=92.44 Aligned_cols=61 Identities=8% Similarity=0.241 Sum_probs=30.0
Q ss_pred CCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcceee-eceEECCCcEECCCCEEeceEE
Q 043870 381 DPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRECSV-EHSIVGIRSRLEYGVELKDTMM 441 (526)
Q Consensus 381 ~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~~~v-~~s~ig~~~~I~~~~~i~~~v~ 441 (526)
|+.+.+++.+.+..++.| +.+.|. ++.|+++|+|+.+.| .++.|+++++|+.++.+.++.+
T Consensus 61 ~~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~~~i~~~~i 124 (320)
T d2f9ca1 61 DENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAI 124 (320)
T ss_dssp STTCEECSSCEECTTCEECSSCEECSSCEECSSCEESSCEECSSEEECSSCEEESCEECSSEEE
T ss_pred CCCcEECCCCEECCCCEECCCcEECCCcEECCcEEECCcEEEcCcEEeeeeeecCccEEeeeEE
Confidence 445555555555555555 333332 255566555554444 3455555555544444444333
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.50 E-value=1.6e-08 Score=93.82 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=10.9
Q ss_pred ceEECCCcEECCCCEE
Q 043870 421 HSIVGIRSRLEYGVEL 436 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i 436 (526)
++.||++|.|+++|.|
T Consensus 60 ~v~IG~~~~Ig~gv~I 75 (203)
T d1mr7a_ 60 KLKIGKFCSIGPGVTI 75 (203)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred ccEECCCeEECCCCcE
Confidence 4667777777777665
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.49 E-value=4.6e-07 Score=81.19 Aligned_cols=33 Identities=33% Similarity=0.402 Sum_probs=15.1
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccCCCcC
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVE 496 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~ 496 (526)
+.||++|.|. +|+|.++++||++|+|+....+.
T Consensus 89 ~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~ 122 (173)
T d1v3wa_ 89 AKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVP 122 (173)
T ss_dssp CEECSSEEECTTCEECTTCEECSSEEECTTCEEC
T ss_pred eecCCcccccceeeecCCEEEcceeEEcCCcEEe
Confidence 4444444444 34444444444444444443333
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=5.9e-08 Score=88.29 Aligned_cols=35 Identities=9% Similarity=0.033 Sum_probs=15.8
Q ss_pred eEECCCCEEcceeeeceEECC--CcEECCCCEEeceEEECC
Q 043870 406 SIISHGCFLRECSVEHSIVGI--RSRLEYGVELKDTMMMGA 444 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~--~~~I~~~~~i~~~v~~~~ 444 (526)
..||++|+|+. +++|.+ .++||++|.|...+.+..
T Consensus 73 i~IG~~~~I~~----~~~I~d~~~I~IG~~~~Ig~~v~I~~ 109 (182)
T d1ocxa_ 73 IFLGNNFFANF----DCVMLDVCPIRIGDNCMLAPGVHIYT 109 (182)
T ss_dssp EEECSSEEECS----SEEEECSSCEEECTTCEECTTCEEEC
T ss_pred eeECCccEECC----CcEEecCCeEEECCCeEECcCceEee
Confidence 44555555543 444432 224455555444444443
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=9.1e-07 Score=80.78 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=16.6
Q ss_pred ceEECCCcEECCCCEEeceEEECC
Q 043870 421 HSIVGIRSRLEYGVELKDTMMMGA 444 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~v~~~~ 444 (526)
+++||++|+|+++|.|.++.++++
T Consensus 32 ~v~IG~~~~I~~~~~I~~~~~~~~ 55 (201)
T d2oi6a1 32 NVTLGHRVKIGTGCVIKNSVIGDD 55 (201)
T ss_dssp EEEECTTCEECTTCEEESCEECTT
T ss_pred ceEECCCcEECCCEEEeeeccCCc
Confidence 677777777777777776666655
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.20 E-value=1.9e-07 Score=86.28 Aligned_cols=38 Identities=3% Similarity=0.040 Sum_probs=20.8
Q ss_pred eeEECCCCEEcc-e-------ee-eceEECCCcEECCCCEEeceEEE
Q 043870 405 DSIISHGCFLRE-C-------SV-EHSIVGIRSRLEYGVELKDTMMM 442 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~-------~v-~~s~ig~~~~I~~~~~i~~~v~~ 442 (526)
+..||++|+|+. + .+ .+++|+.++.||++|.|...+.+
T Consensus 29 nV~IG~~~~I~~~~~~~~~~~~i~~~~~I~~~v~IG~~~~Ig~gv~I 75 (203)
T d1mr7a_ 29 NVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTI 75 (203)
T ss_dssp TEEECTTCEEECSSSCCGGGGEESCCGGGCCCEEECSSCEECTTCEE
T ss_pred CEEECCCcEEcCCcCcccCceEEeeeCEECCccEECCCeEECCCCcE
Confidence 356666666642 1 11 34555666666666666655443
|
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=98.15 E-value=4e-05 Score=79.38 Aligned_cols=217 Identities=18% Similarity=0.214 Sum_probs=128.6
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceee---CCcchhHHHHHHHHHhc----------CC-cEEEEEec-cChhHHHH
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPI---GGCYRLIDVPMSNCINS----------GI-KKIYILTQ-FNSQSLNR 155 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV---~g~~pLI~~~l~~l~~~----------gi-~~I~Iv~~-~~~~~l~~ 155 (526)
.++.+|+||||.||||+ ...||.++|| .|+ ++++..++++... +. -.++|.+. ...+.+.+
T Consensus 101 gkvavvllaGG~GTRLG---~~~pK~~~~v~~~~~k-sllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~ 176 (501)
T d1jv1a_ 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (501)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CCEEEEEECCCccccCC---CCCCceeeeeccCCCC-cHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHH
Confidence 46899999999999998 6789999998 567 8999988887652 21 24666666 55568888
Q ss_pred HhhhcccCCCCc----ccCCCeEEEEeccccc----CcCCCccccChHHHHHHHHH--HhhhhccCCCCeEEEEcCCeec
Q 043870 156 HISRTYNLGDGM----NFGDGFVEVLAATQRQ----GESGKKWFQGTADAVRQFIW--MFEDAKHRNIENILILSGDHLY 225 (526)
Q Consensus 156 ~l~~~~~~~~~~----~~~~~~v~vl~~~~~~----~~~~~~~~~Gt~~al~~~~~--~i~~~~~~~~e~~lil~gD~l~ 225 (526)
+|.+.-.|+... -|....+..+...... ...-...|.|.++....... .+++...+..+.+.+.+.|.+.
T Consensus 177 ~l~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l 256 (501)
T d1jv1a_ 177 FFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNIL 256 (501)
T ss_dssp HHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTT
T ss_pred HHHhccccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCcc
Confidence 887643343221 0112222222110000 00000124566655544332 3444445788999999999954
Q ss_pred -ccCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEE-cCCCCeeeeeccCCccccccccccccccccchhhhcCCCc
Q 043870 226 -RMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKI-DETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPY 303 (526)
Q Consensus 226 -~~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~-d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~ 303 (526)
..---.++-.+...++++.+-+.+...+. ..-|++.. |..-+|+++.+-|..... ...-+. ...-.
T Consensus 257 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-e~~G~l~~~dg~~~vvEysel~~~~~~-~~~~~g----------~l~f~ 324 (501)
T d1jv1a_ 257 VKVADPRFIGFCIQKGADCGAKVVEKTNPT-EPVGVVCRVDGVYQVVEYSEISLATAQ-KRSSDG----------RLLFN 324 (501)
T ss_dssp CCTTCHHHHHHHHHTTCSEEEEEEECCSTT-CSCCEEEEETTEEEEECGGGSCHHHHH-CBCTTS----------SBSSC
T ss_pred ccccCHHHHHHHHhcccceeEEEEEcCCCC-cccceEEEECCeEEEEEeccCCHHHHh-hccCCC----------ccccc
Confidence 44345677888889999988887754422 23455443 333345666665442110 000000 00123
Q ss_pred eeeeeEEEEcHHHHHHHHHh
Q 043870 304 IASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 304 l~~~Giyif~~~~l~~ll~~ 323 (526)
..+++.++|+-+++.++++.
T Consensus 325 ~~Ni~~~~fsl~fl~~~~~~ 344 (501)
T d1jv1a_ 325 AGNIANHFFTVPFLRDVVNV 344 (501)
T ss_dssp EEEEEEEEEEHHHHHHHHHT
T ss_pred ccceeheeeEHHHHHHHHHh
Confidence 68899999999999888764
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.11 E-value=7.1e-06 Score=77.43 Aligned_cols=94 Identities=19% Similarity=0.196 Sum_probs=46.9
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEEC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIG 484 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig 484 (526)
+.||.|++|... ...+||+.+.||++|.|..++.++... -..++.|+.||+|+.|. ++.|-.+++||
T Consensus 144 ~~Ig~g~~i~h~--~givig~~~~ig~~~~i~~~v~~~~~~----------~~~~~~~~~Ig~~v~IGaga~Ilg~v~IG 211 (241)
T d1ssqa_ 144 AKIGHGIMFDHA--TGIVVGETSVIENDVSILQGVTLGGTG----------KESGDRHPKVREGVMIGAGAKILGNIEVG 211 (241)
T ss_dssp CEECSSCEESSC--TTCEECTTCEECTTCEECTTCEEECCS----------SSCSSCSCEECTTCEECTTCEEESSCEEC
T ss_pred CEEccCcccCcc--ceEEEeccceecCCeeecccccccccc----------cCCCCCCCccCCCeEECCCCEEcCCcEEC
Confidence 334444444320 145555555555555555555554321 11234556666666665 45555555555
Q ss_pred CCcEEccCCCcCCccccCCCeEEccCcEEECCCCE
Q 043870 485 KNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTT 519 (526)
Q Consensus 485 ~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~ 519 (526)
++++|+..+.|.+. +.++.++.|.-|.
T Consensus 212 ~~a~IgAgsvV~kd--------Vp~~~vv~G~PAr 238 (241)
T d1ssqa_ 212 KYAKIGANSVVLNP--------VPEYATAAGVPAR 238 (241)
T ss_dssp TTCEECTTCEECSC--------BCTTCEEETTTTE
T ss_pred CCCEECCCCEECCC--------CCCCCEEEecCcE
Confidence 55555554444332 3445555555544
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.09 E-value=4e-06 Score=79.24 Aligned_cols=13 Identities=23% Similarity=0.187 Sum_probs=6.0
Q ss_pred EECCCCEECCCcc
Q 043870 513 VVLKNTTIKDGTI 525 (526)
Q Consensus 513 ~i~~~~~i~~gt~ 525 (526)
.||++++||+|++
T Consensus 209 ~IG~~a~IgAgsv 221 (241)
T d1ssqa_ 209 EVGKYAKIGANSV 221 (241)
T ss_dssp EECTTCEECTTCE
T ss_pred EECCCCEECCCCE
Confidence 3344444444444
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.03 E-value=8.9e-06 Score=79.94 Aligned_cols=46 Identities=11% Similarity=0.223 Sum_probs=21.3
Q ss_pred EECCCCEEe-ceEECCCCEECCCcEEccC-CCcCCccccCCCeEEccC
Q 043870 465 GIGRDTKIK-NCIIDKNAKIGKNVIIANK-DGVEEAERPSDGFYIRSG 510 (526)
Q Consensus 465 ~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~-~~v~~~~~~~~~~~I~~g 510 (526)
.||+++.|. +|.|++++.||.++.|... ..+.++.++++++.|+.+
T Consensus 231 ~Ig~~a~I~g~~~i~~~v~Ig~~a~i~G~~v~i~~~~~I~~~a~I~g~ 278 (320)
T d2f9ca1 231 QVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGE 278 (320)
T ss_dssp EECSSCEEESSEEECTEEEECSSCEEESSSEEECSEEEECSSCEEESS
T ss_pred ccCcceeeeeeccccCceEECCCeEEeCCeeEECCceEECCCcEEccc
Confidence 344444443 3555555555555555432 234444445555555433
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.83 E-value=4.1e-06 Score=77.37 Aligned_cols=11 Identities=0% Similarity=0.005 Sum_probs=6.6
Q ss_pred eEECCCCEEcc
Q 043870 406 SIISHGCFLRE 416 (526)
Q Consensus 406 s~Ig~~~~i~~ 416 (526)
..||+++++..
T Consensus 21 i~IGd~t~i~~ 31 (208)
T d1xata_ 21 IRVGRYSYYSG 31 (208)
T ss_dssp EEECTTCEECC
T ss_pred cEECCCeeECC
Confidence 45666666643
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.65 E-value=4.8e-05 Score=69.95 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=23.5
Q ss_pred ceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCC
Q 043870 463 PVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 463 ~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~ 497 (526)
++.||++|.|. +|+|.++++||++|+|+....|..
T Consensus 108 ~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtk 143 (208)
T d1xata_ 108 DTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTG 143 (208)
T ss_dssp CEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred CEEEcCCeEECccccccCCeEeCCCCEEeCceEEee
Confidence 46777777775 477777777777777766665553
|
| >d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Exostosin domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.13 E-value=0.27 Score=42.89 Aligned_cols=104 Identities=10% Similarity=0.012 Sum_probs=60.0
Q ss_pred ceeeCCcchhHHHHHHHHHhcCC-cEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChH
Q 043870 117 AVPIGGCYRLIDVPMSNCINSGI-KKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTA 195 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~gi-~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~ 195 (526)
++|.-+++..|..+|+.|.+... ++++||....++...+.+.+.+. .. . ..++...+. .|.+
T Consensus 8 ii~tyn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~~-~~----~---~~~~~~~~~---------~g~~ 70 (265)
T d1omza_ 8 IMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLG-PH----P---IPVIFKPQT---------ANKM 70 (265)
T ss_dssp EEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTC-CC----S---SCEEEEECS---------SCCG
T ss_pred EEEcCCCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHHhc-cc----c---eEEEEecCC---------CCch
Confidence 35566665799999999987754 55666655444332333333220 00 0 111222222 3555
Q ss_pred HHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcE
Q 043870 196 DAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDI 243 (526)
Q Consensus 196 ~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ 243 (526)
.+...++...+ .|-++++.+|.+...+ +..+++.+.+.+.++
T Consensus 71 ~a~n~~~~~a~------ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 113 (265)
T d1omza_ 71 RNRLQVFPEVE------TNAVLMVDDDTLISAQDLVFAFSIWQQFPDQI 113 (265)
T ss_dssp GGGGSCCTTCC------SSEEEEECTTEEECHHHHHHHHHHHTTSTTSE
T ss_pred hhhhhhHHhCC------cCEEEEeCcccCCCHHHHHHHHHHHHhCCCcc
Confidence 55544433333 3889999999998887 777887776655543
|