Citrus Sinensis ID: 043887

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------
Protein Sequence
MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKPR
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEccccccEEEEccccccccEEcccccccc
Secondary Structure Prediction (SSPRO)
HHcccccccccEEEccccEccHHHcccEEEcccccccEEEcccccccc
Coil and Loop (DISEMBL)
mldlafgltetshlgcqivarpeldgiclalpaasrnfavdgyvpkpr
Flexible Loop (DISEMBL)
MLDLAFGltetshlgCQIVARPELDGICLALPaasrnfavdgyvpkpr
Low Complexity Region (SEG)
MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKPR
Disordered region (IsUnstruct)
***LAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGY*****
Disordered Region (DISOPRED)
MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDG******
Disordered Region (DISEMBL)
MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKPR
Disordered Region (DISPRO)
*LDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGY*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKPR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	48	2.2.26 [Sep-21-2011]
Q08C57	195	Adrenodoxin-like protein,	yes	no	0.979	0.241	0.638	3e-10
Q9CPW2	174	Adrenodoxin-like protein,	yes	no	0.979	0.270	0.617	8e-10
Q9AKC4	117	2Fe-2S ferredoxin OS=Rick	yes	no	0.895	0.367	0.627	2e-09
Q6P4F2	183	Adrenodoxin-like protein,	yes	no	0.979	0.256	0.617	5e-09
Q05B51	186	Adrenodoxin-like protein,	yes	no	0.979	0.252	0.617	6e-09
Q9AKH1	112	2Fe-2S ferredoxin OS=Rick	yes	no	0.833	0.357	0.675	2e-08
Q4UKL2	112	2Fe-2S ferredoxin OS=Rick	yes	no	0.833	0.357	0.65	3e-08
Q9ZDW6	112	2Fe-2S ferredoxin OS=Rick	yes	no	0.833	0.357	0.65	3e-08
Q9AKM6	112	2Fe-2S ferredoxin OS=Rick	yes	no	0.833	0.357	0.65	3e-08
Q5FWQ0	193	Adrenodoxin-like protein,	N/A	no	0.979	0.243	0.553	5e-08

>sp|Q08C57|ADXL_DANRE Adrenodoxin-like protein, mitochondrial OS=Danio rerio GN=fdx1l PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 35/47 (74%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
           MLD+A  L E S LGCQI+  PELDG+ L LP  +RNF VDG+VPKP
Sbjct: 148 MLDMAPLLQENSRLGCQIILTPELDGMELTLPKVTRNFYVDGHVPKP 194

Danio rerio (taxid: 7955)

>sp|Q9CPW2|ADXL_MOUSE Adrenodoxin-like protein, mitochondrial OS=Mus musculus GN=Fdx1l PE=2 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 35/47 (74%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
           MLD+A  L E S LGCQIV  PEL+G+  ALP  +RNF VDG++PKP
Sbjct: 127 MLDMAPLLQENSRLGCQIVLTPELEGVEFALPKITRNFYVDGHIPKP 173

Mus musculus (taxid: 10090)

>sp|Q9AKC4|FER2_RICTY 2Fe-2S ferredoxin OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=fdxB PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGY 43
           MLDLAFGLT+TS LGCQI+   ELDGI + LP+A+RN   +G+
Sbjct: 73  MLDLAFGLTDTSRLGCQIILTEELDGIKVRLPSATRNINYNGF 115

Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Rickettsia typhi (strain ATCC VR-144 / Wilmington) (taxid: 257363)

>sp|Q6P4F2|ADXL_HUMAN Adrenodoxin-like protein, mitochondrial OS=Homo sapiens GN=FDX1L PE=1 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 33/47 (70%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
           MLD+A  L E S LGCQIV  PEL+G    LP  +RNF VDG+VPKP
Sbjct: 136 MLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITRNFYVDGHVPKP 182

Homo sapiens (taxid: 9606)

>sp|Q05B51|ADXL_BOVIN Adrenodoxin-like protein, mitochondrial OS=Bos taurus GN=FDX1L PE=2 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 33/47 (70%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
           MLD+A  L E S LGCQIV  PEL+G    LP  +RNF VDG+VPKP
Sbjct: 139 MLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITRNFYVDGHVPKP 185

Bos taurus (taxid: 9913)

>sp|Q9AKH1|FER2_RICRI 2Fe-2S ferredoxin OS=Rickettsia rickettsii GN=fdxB PE=3 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 32/40 (80%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAV 40
           MLDLAFGLT+TS LGCQI+   ELDGI + LPAA+RN  +
Sbjct: 73  MLDLAFGLTDTSRLGCQIILTEELDGIKVHLPAATRNIKL 112

Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Rickettsia rickettsii (taxid: 783)

>sp|Q4UKL2|FER2_RICFE 2Fe-2S ferredoxin OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=fdxB PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAV 40
           MLDLAFGLT+TS LGCQI+   ELDGI + LP+A+RN  +
Sbjct: 73  MLDLAFGLTDTSRLGCQIILTEELDGIKVRLPSATRNIKL 112

Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q9ZDW6|FER2_RICPR 2Fe-2S ferredoxin OS=Rickettsia prowazekii (strain Madrid E) GN=fdxB PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAV 40
           MLDLAFGLT+TS LGCQI+   ELDGI + LP+A+RN  +
Sbjct: 73  MLDLAFGLTDTSRLGCQIILTEELDGIKVRLPSATRNIKL 112

Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

>sp|Q9AKM6|FER2_RICMO 2Fe-2S ferredoxin OS=Rickettsia montana GN=fdxB PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAV 40
           MLDLAFGLT+TS LGCQI+   ELDGI + LP+A+RN  +
Sbjct: 73  MLDLAFGLTDTSRLGCQIILTEELDGIKVRLPSATRNIKL 112

Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Rickettsia montana (taxid: 33991)

>sp|Q5FWQ0|ADXL_XENLA Adrenodoxin-like protein, mitochondrial OS=Xenopus laevis GN=fdx1l PE=2 SV=1

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/47 (55%), Positives = 32/47 (68%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
           MLD+A  L E S LGCQI+   +L+G    LP  +RNF VDG+VPKP
Sbjct: 146 MLDMAPLLQENSRLGCQIILTKQLNGAEFTLPKITRNFYVDGHVPKP 192

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	48
356564716	198	PREDICTED: 2Fe-2S ferredoxin-like [Glyci	0.979	0.237	0.851	2e-17
356547972	199	PREDICTED: 2Fe-2S ferredoxin-like [Glyci	0.979	0.236	0.851	3e-17
255550341	199	adrenodoxin, putative [Ricinus communis]	0.979	0.236	0.851	8e-17
388507328	201	unknown [Lotus japonicus]	0.979	0.233	0.829	1e-16
357124935	180	PREDICTED: 2Fe-2S ferredoxin-like [Brach	0.979	0.261	0.829	1e-16
21553832	197	MFDX2 precursor [Arabidopsis thaliana]	0.979	0.238	0.808	2e-16
294461241	267	unknown [Picea sitchensis]	0.979	0.176	0.829	2e-16
15235586	197	mitochondrial ferredoxin 1 [Arabidopsis	0.979	0.238	0.808	2e-16
356528054	133	PREDICTED: 2Fe-2S ferredoxin-like [Glyci	1.0	0.360	0.833	2e-16
297809749	197	hypothetical protein ARALYDRAFT_490193 [	0.979	0.238	0.808	2e-16

>gi|356564716|ref|XP_003550595.1| PREDICTED: 2Fe-2S ferredoxin-like [Glycine max]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/47 (85%), Positives = 45/47 (95%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
           MLDLAFGLTETS LGCQ++A+PELDGI LA+PAA+RNFAVDGYVPKP
Sbjct: 151 MLDLAFGLTETSRLGCQVIAKPELDGIRLAIPAATRNFAVDGYVPKP 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547972|ref|XP_003542378.1| PREDICTED: 2Fe-2S ferredoxin-like [Glycine max]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/47 (85%), Positives = 45/47 (95%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
           MLDLAFGLTETS LGCQ++A+PELDGI LA+PAA+RNFAVDGYVPKP
Sbjct: 152 MLDLAFGLTETSRLGCQVIAKPELDGIRLAIPAATRNFAVDGYVPKP 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550341|ref|XP_002516221.1| adrenodoxin, putative [Ricinus communis] gi|223544707|gb|EEF46223.1| adrenodoxin, putative [Ricinus communis]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/47 (85%), Positives = 45/47 (95%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
           MLDLAFGLTETS LGCQ++A+PELDGI LA+PAA+RNFAVDGYVPKP
Sbjct: 152 MLDLAFGLTETSRLGCQVIAKPELDGIRLAIPAATRNFAVDGYVPKP 198

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507328|gb|AFK41730.1| unknown [Lotus japonicus]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/47 (82%), Positives = 45/47 (95%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
           MLDLAFGLTETS LGCQ++A+PELDGI LA+PAA+RNFAVDG+VPKP
Sbjct: 154 MLDLAFGLTETSRLGCQVIAKPELDGIRLAIPAATRNFAVDGFVPKP 200

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357124935|ref|XP_003564152.1| PREDICTED: 2Fe-2S ferredoxin-like [Brachypodium distachyon]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/47 (82%), Positives = 45/47 (95%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
           MLDLAFGLTETS LGCQ++A+PELDG+ LALPAA+RNFAVDG+VPKP
Sbjct: 133 MLDLAFGLTETSRLGCQVIAKPELDGVRLALPAATRNFAVDGFVPKP 179

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553832|gb|AAM62925.1| MFDX2 precursor [Arabidopsis thaliana]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 45/47 (95%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
           MLDLAFGLTETS LGCQ++ARPELDG+ LA+P+A+RNFAVDG+VPKP
Sbjct: 150 MLDLAFGLTETSRLGCQVIARPELDGVRLAIPSATRNFAVDGFVPKP 196

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294461241|gb|ADE76183.1| unknown [Picea sitchensis]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/47 (82%), Positives = 45/47 (95%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
           MLDLAFGLTETS LGCQ++A+PELDG+ +ALPAA+RNFAVDGYVPKP
Sbjct: 220 MLDLAFGLTETSRLGCQVIAKPELDGMKVALPAATRNFAVDGYVPKP 266

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235586|ref|NP_192454.1| mitochondrial ferredoxin 1 [Arabidopsis thaliana] gi|7267305|emb|CAB81087.1| putative protein [Arabidopsis thaliana] gi|17481342|dbj|BAB79226.1| MFDX1 [Arabidopsis thaliana] gi|17529092|gb|AAL38756.1| unknown protein [Arabidopsis thaliana] gi|20259095|gb|AAM14263.1| unknown protein [Arabidopsis thaliana] gi|28192431|gb|AAL82813.1| adrenodoxin-like ferredoxin 2 [Arabidopsis thaliana] gi|332657122|gb|AEE82522.1| mitochondrial ferredoxin 1 [Arabidopsis thaliana]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 45/47 (95%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
           MLDLAFGLTETS LGCQ++ARPELDG+ LA+P+A+RNFAVDG+VPKP
Sbjct: 150 MLDLAFGLTETSRLGCQVIARPELDGVRLAIPSATRNFAVDGFVPKP 196

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528054|ref|XP_003532620.1| PREDICTED: 2Fe-2S ferredoxin-like [Glycine max]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/48 (83%), Positives = 45/48 (93%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKPR 48
           MLDLAFGLTETS LGCQ++A+PELDGI LA+PAA+RNFAVDGYVPKP 
Sbjct: 86  MLDLAFGLTETSRLGCQVIAKPELDGIRLAIPAATRNFAVDGYVPKPH 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809749|ref|XP_002872758.1| hypothetical protein ARALYDRAFT_490193 [Arabidopsis lyrata subsp. lyrata] gi|297318595|gb|EFH49017.1| hypothetical protein ARALYDRAFT_490193 [Arabidopsis lyrata subsp. lyrata]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 45/47 (95%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
           MLDLAFGLTETS LGCQ++ARPELDG+ LA+P+A+RNFAVDG+VPKP
Sbjct: 150 MLDLAFGLTETSRLGCQVIARPELDGVRLAIPSATRNFAVDGFVPKP 196

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	48
TAIR|locus:2115939	197	MFDX1 "mitochondrial ferredoxi	0.979	0.238	0.808	3.2e-17
TAIR|locus:2127358	197	MFDX2 "MITOCHONDRIAL FERREDOXI	0.979	0.238	0.765	2.9e-16
ZFIN|ZDB-GENE-060929-1046	195	fdx1l "ferredoxin 1-like" [Dan	0.979	0.241	0.638	9.4e-11
MGI|MGI:1915415	174	Fdx1l "ferredoxin 1-like" [Mus	0.979	0.270	0.617	2e-10
WB|WBGene00013532	169	Y73F8A.27 [Caenorhabditis eleg	0.979	0.278	0.617	2e-10
TIGR_CMR|APH_0679	116	APH_0679 "iron-sulfur cluster-	0.854	0.353	0.658	3.2e-10
RGD|1561264	174	Fdx1l "ferredoxin 1-like" [Rat	0.979	0.270	0.617	5.2e-10
UNIPROTKB|Q05B51	186	FDX1L "Adrenodoxin-like protei	0.979	0.252	0.617	1.1e-09
UNIPROTKB|E2RM76	186	FDX1L "Uncharacterized protein	0.979	0.252	0.617	1.1e-09
UNIPROTKB|K7ESJ8	63	K7ESJ8 "Uncharacterized protei	0.979	0.746	0.617	1.1e-09

TAIR|locus:2115939 MFDX1 "mitochondrial ferredoxin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 38/47 (80%), Positives = 45/47 (95%)

Query:     1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
             MLDLAFGLTETS LGCQ++ARPELDG+ LA+P+A+RNFAVDG+VPKP
Sbjct:   150 MLDLAFGLTETSRLGCQVIARPELDGVRLAIPSATRNFAVDGFVPKP 196

GO:0005739 "mitochondrion" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA;ISS

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0048868 "pollen tube development" evidence=IMP

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TAIR|locus:2127358 MFDX2 "MITOCHONDRIAL FERREDOXIN 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 36/47 (76%), Positives = 44/47 (93%)

Query:     1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
             MLDLAFGLT TS LGCQ++A+PELDG+ LA+P+A+RNFAVDG+VPKP
Sbjct:   150 MLDLAFGLTATSRLGCQVIAKPELDGVRLAIPSATRNFAVDGFVPKP 196

GO:0005739 "mitochondrion" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA;ISS

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

ZFIN|ZDB-GENE-060929-1046 fdx1l "ferredoxin 1-like" [Danio rerio (taxid:7955)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 30/47 (63%), Positives = 35/47 (74%)

Query:     1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
             MLD+A  L E S LGCQI+  PELDG+ L LP  +RNF VDG+VPKP
Sbjct:   148 MLDMAPLLQENSRLGCQIILTPELDGMELTLPKVTRNFYVDGHVPKP 194

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

MGI|MGI:1915415 Fdx1l "ferredoxin 1-like" [Mus musculus (taxid:10090)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 29/47 (61%), Positives = 35/47 (74%)

Query:     1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
             MLD+A  L E S LGCQIV  PEL+G+  ALP  +RNF VDG++PKP
Sbjct:   127 MLDMAPLLQENSRLGCQIVLTPELEGVEFALPKITRNFYVDGHIPKP 173

GO:0005739 "mitochondrion" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009055 "electron carrier activity" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

WB|WBGene00013532 Y73F8A.27 [Caenorhabditis elegans (taxid:6239)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 29/47 (61%), Positives = 34/47 (72%)

Query:     1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
             MLD+A  L + S LGCQIV   ELDGI + LP  +RNF VDG+VPKP
Sbjct:   122 MLDMAPALKDNSRLGCQIVLTKELDGITVTLPTMTRNFYVDGHVPKP 168

GO:0009055 "electron carrier activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

TIGR_CMR|APH_0679 APH_0679 "iron-sulfur cluster-binding protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 27/41 (65%), Positives = 32/41 (78%)

Query:     1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVD 41
             MLDLAFGLTETS LGCQ+V   ELDG+C+ LP  +RN + D
Sbjct:    73 MLDLAFGLTETSRLGCQVVMTKELDGLCVILPGETRNVSFD 113

GO:0009055 "electron carrier activity" evidence=ISS

RGD|1561264 Fdx1l "ferredoxin 1-like" [Rattus norvegicus (taxid:10116)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 29/47 (61%), Positives = 34/47 (72%)

Query:     1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
             MLD+A  L E S LGCQIV  PEL+G   ALP  +RNF VDG++PKP
Sbjct:   127 MLDMAPLLQENSRLGCQIVLTPELEGAEFALPKITRNFYVDGHIPKP 173

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0009055 "electron carrier activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

UNIPROTKB|Q05B51 FDX1L "Adrenodoxin-like protein, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 29/47 (61%), Positives = 33/47 (70%)

Query:     1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
             MLD+A  L E S LGCQIV  PEL+G    LP  +RNF VDG+VPKP
Sbjct:   139 MLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITRNFYVDGHVPKP 185

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|E2RM76 FDX1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 29/47 (61%), Positives = 33/47 (70%)

Query:     1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
             MLD+A  L E S LGCQIV  PEL+G    LP  +RNF VDG+VPKP
Sbjct:   139 MLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITRNFYVDGHVPKP 185

GO:0005739 "mitochondrion" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|K7ESJ8 K7ESJ8 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 29/47 (61%), Positives = 33/47 (70%)

Query:     1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
             MLD+A  L E S LGCQIV  PEL+G    LP  +RNF VDG+VPKP
Sbjct:    16 MLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITRNFYVDGHVPKP 62

GO:0009055 "electron carrier activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	BRADI1G46640.2	annotation not avaliable (180 aa)
		(Brachypodium distachyon)
Predicted Functional Partners:
	BRADI4G28300.1	annotation not avaliable (455 aa)	•			•	•		•		0.829
	BRADI4G07780.1	annotation not avaliable (258 aa)	•		•	•			•		0.804
	BRADI2G16040.1	annotation not avaliable (172 aa)	•			•	•		•		0.561
	BRADI2G45740.1	annotation not avaliable (175 aa)	•			•	•		•		0.557
	BRADI3G39240.1	annotation not avaliable (479 aa)		•					•		0.423
	BRADI2G32530.1	annotation not avaliable (497 aa)					•		•		0.408

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	48
PLN02593	117	PLN02593, PLN02593, adrenodoxin-like ferredoxin pr	3e-28
PTZ00490	143	PTZ00490, PTZ00490, Ferredoxin superfamily; Provis	3e-04

>gnl|CDD|178203 PLN02593, PLN02593, adrenodoxin-like ferredoxin protein

 Score = 95.9 bits (239), Expect = 3e-28
 Identities = 39/47 (82%), Positives = 45/47 (95%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKP 47
           MLDLAFGLTETS LGCQ++A+PELDG+ LALPAA+RNFAVDG+VPKP
Sbjct: 70  MLDLAFGLTETSRLGCQVIAKPELDGMRLALPAATRNFAVDGHVPKP 116

Length = 117

>gnl|CDD|185668 PTZ00490, PTZ00490, Ferredoxin superfamily; Provisional

 Score = 35.2 bits (81), Expect = 3e-04
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRN 37
           +L  A  + ETS L CQ+   PE+DG+ + LP+   N
Sbjct: 105 VLAKALDVKETSRLACQVDLTPEMDGLEVELPSYVTN 141

Length = 143

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	48
KOG3309	159	consensus Ferredoxin [Energy production and conver	99.83
PLN02593	117	adrenodoxin-like ferredoxin protein	99.7
PTZ00490	143	Ferredoxin superfamily; Provisional	99.25
COG0633	102	Fdx Ferredoxin [Energy production and conversion]	98.33
TIGR02007	110	fdx_isc ferredoxin, 2Fe-2S type, ISC system. This	98.17
cd00207	84	fer2 2Fe-2S iron-sulfur cluster binding domain. Ir	93.29
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	93.26
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	92.76
TIGR02008	97	fdx_plant ferredoxin [2Fe-2S]. This model represen	92.67
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	90.4
CHL00134	99	petF ferredoxin; Validated	87.29
PF00111	78	Fer2: 2Fe-2S iron-sulfur cluster binding domain; I	85.3
COG3894	614	Uncharacterized metal-binding protein [General fun	82.95

>KOG3309 consensus Ferredoxin [Energy production and conversion]

Probab=99.83  E-value=2.1e-21  Score=122.43  Aligned_cols=48  Identities=73%  Similarity=1.196  Sum_probs=47.3

Q ss_pred             CcccCCCCCCCCccccceEeeCCCCCeEEEcCCcchheeecCCccCCC
Q 043887            1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKPR   48 (48)
Q Consensus         1 mLd~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~~~~~~~~~~   48 (48)
                      |||+|++++++|||+|||.++.+||||+|+||+..+|+++||++||||
T Consensus       112 mLDlA~gLt~tSRLGCQI~l~keldG~~v~vP~atrn~~vd~~~~kph  159 (159)
T KOG3309|consen  112 MLDLAFGLTETSRLGCQIVLTKELDGMRVAVPEATRNFRVDGFVPKPH  159 (159)
T ss_pred             HHHhhhccccccccceEEEeccccCCcEEECccccccccccCCCCCCC
Confidence            799999999999999999999999999999999999999999999998

>PLN02593 adrenodoxin-like ferredoxin protein

Probab=99.70  E-value=1.2e-17  Score=99.51  Aligned_cols=48  Identities=81%  Similarity=1.306  Sum_probs=44.9

Q ss_pred             CcccCCCCCCCCccccceEeeCCCCCeEEEcCCcchheeecCCccCCC
Q 043887            1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPKPR   48 (48)
Q Consensus         1 mLd~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~~~~~~~~~~   48 (48)
                      ||+.+.++.++||||||+.++++++|++|+||++++|+++++|++|||
T Consensus        70 ~L~~~~~~~~~sRLaCQ~~v~~~~~~~~v~ip~~~~~~~~~~~~~~~~  117 (117)
T PLN02593         70 MLDLAFGLTETSRLGCQVIAKPELDGMRLALPAATRNFAVDGHVPKPH  117 (117)
T ss_pred             HHhcccCCCCCeEecceeEeecCCCCEEEEcCchhccccccCCCCCCC
Confidence            356677889999999999999999999999999999999999999998

>PTZ00490 Ferredoxin superfamily; Provisional

Probab=99.25  E-value=3.9e-12  Score=78.80  Aligned_cols=38  Identities=39%  Similarity=0.639  Sum_probs=33.7

Q ss_pred             CcccCCCCCCCCccccceEeeCCCCCeEEEcCCcchhe
Q 043887            1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNF   38 (48)
Q Consensus         1 mLd~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~   38 (48)
                      ||+.+.++.++||||||+.++++|||++|+||+++.|.
T Consensus       105 ~L~~~~~~~~gsRLaCQi~v~~~ldgl~V~vp~~~~~~  142 (143)
T PTZ00490        105 VLAKALDVKETSRLACQVDLTPEMDGLEVELPSYVTNR  142 (143)
T ss_pred             HhhccccCCCCcEEeeeEEEecCCCCEEEEeCcccccc
Confidence            46666788999999999999999999999999998763

>COG0633 Fdx Ferredoxin [Energy production and conversion]

Probab=98.33  E-value=2.6e-07  Score=53.71  Aligned_cols=33  Identities=36%  Similarity=0.505  Sum_probs=28.9

Q ss_pred             CcccCCCCCCCCccccceEeeCCCCCeEEEcCCc
Q 043887            1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAA   34 (48)
Q Consensus         1 mLd~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~   34 (48)
                      ||+ ++...++|||+||+.+..+++..++.+|..
T Consensus        69 ~l~-~~~~~~~~rL~Cq~~~~~d~~i~~~~~~~~  101 (102)
T COG0633          69 LLD-AAGLEGNSRLSCQCRVKGDLDIEVVEEPEY  101 (102)
T ss_pred             HHH-hhccCCCcEEeeeeEECCCcceEEEeccCC
Confidence            344 678889999999999999999999999875

>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system

Probab=98.17  E-value=9e-07  Score=51.80  Aligned_cols=33  Identities=36%  Similarity=0.608  Sum_probs=27.1

Q ss_pred             CCCCCCCCccccceEeeCCCCCeEEEcCCcchhee
Q 043887            5 AFGLTETSHLGCQIVARPELDGICLALPAASRNFA   39 (48)
Q Consensus         5 a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~   39 (48)
                      ..++.+++|||||+.+..+  +++|++|..+.++.
T Consensus        75 ~~~~~~~~RLaCq~~~~~~--dl~v~~~~~~~~~~  107 (110)
T TIGR02007        75 AWGLEPDSRLSCQAVVADE--DLVVEIPKYTINHA  107 (110)
T ss_pred             ccCCCCCcEEeeeEEEcCC--CEEEEECchhhhhh
Confidence            4467789999999999864  89999998877654

This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.

>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain

Probab=93.29  E-value=0.02  Score=30.51  Aligned_cols=19  Identities=21%  Similarity=0.359  Sum_probs=14.4

Q ss_pred             CCCCCccccceEeeCCCCCeEE
Q 043887            8 LTETSHLGCQIVARPELDGICL   29 (48)
Q Consensus         8 ~~~~SRLsCQi~v~~~ldGl~V   29 (48)
                      ..+.+||+||..+.+   +++|
T Consensus        65 ~~~~~~LaC~~~~~~---~i~v   83 (84)
T cd00207          65 AEGGYVLACQTRVTD---GLVI   83 (84)
T ss_pred             HhCCeEEEEeCeeCC---CcEE
Confidence            457899999999954   4554

Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=93.26  E-value=0.056  Score=37.02  Aligned_cols=26  Identities=19%  Similarity=0.445  Sum_probs=20.5

Q ss_pred             CCCCCCccccceEeeCCCCCeEEEcCCcc
Q 043887            7 GLTETSHLGCQIVARPELDGICLALPAAS   35 (48)
Q Consensus         7 ~~~~~SRLsCQi~v~~~ldGl~V~vp~~~   35 (48)
                      +..+++||+||..+..   +++|++|...
T Consensus        99 ~~~~g~rLaCq~~~~~---d~~i~~~~~~  124 (405)
T TIGR01941        99 EAKEGWRLSCQVKVKQ---DMSIEIPEEI  124 (405)
T ss_pred             HhcCCcEEEeeCEECC---CEEEEECccc
Confidence            4567899999998875   5789988554

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=92.76  E-value=0.033  Score=39.49  Aligned_cols=30  Identities=20%  Similarity=0.342  Sum_probs=23.8

Q ss_pred             CCCCCCccccceEeeCCCCCeEEEcCCcchhee
Q 043887            7 GLTETSHLGCQIVARPELDGICLALPAASRNFA   39 (48)
Q Consensus         7 ~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~   39 (48)
                      ++++.-|||||+.+..+|   .+++|++-.++.
T Consensus       104 ea~eG~RLsCQ~~Vk~dm---~levpEe~fgvk  133 (410)
T COG2871         104 EAKEGWRLSCQVNVKHDM---DLEVPEEVFGVK  133 (410)
T ss_pred             hhhccceEEEEecccccc---eeechHHhcCcc
Confidence            356788999999998754   699999877653

>TIGR02008 fdx_plant ferredoxin [2Fe-2S]

Probab=92.67  E-value=0.056  Score=30.69  Aligned_cols=27  Identities=7%  Similarity=0.059  Sum_probs=21.4

Q ss_pred             CCCCCccccceEeeCCCCCeEEEcCCcchh
Q 043887            8 LTETSHLGCQIVARPELDGICLALPAASRN   37 (48)
Q Consensus         8 ~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n   37 (48)
                      +....||+||.....   .++|++|....+
T Consensus        70 ~~~g~~LaC~~~~~~---di~v~~~~~~~~   96 (97)
T TIGR02008        70 MEAGYVLTCVAYPTS---DCTIETHKEEDL   96 (97)
T ss_pred             HhCCeEEEeeCEECC---CeEEEecccccc
Confidence            445789999998764   689999987765

This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=90.40  E-value=0.19  Score=34.45  Aligned_cols=26  Identities=19%  Similarity=0.395  Sum_probs=19.7

Q ss_pred             CCCCCCccccceEeeCCCCCeEEEcCCcc
Q 043887            7 GLTETSHLGCQIVARPELDGICLALPAAS   35 (48)
Q Consensus         7 ~~~~~SRLsCQi~v~~~ldGl~V~vp~~~   35 (48)
                      +..+.+||+||+.+..   +++|+++...
T Consensus       103 e~~~g~rLaCq~~~~~---d~~ie~~~~~  128 (409)
T PRK05464        103 EAKEGWRLSCQVKVKQ---DMKIEVPEEI  128 (409)
T ss_pred             hccCCcEEEeeCEECC---CEEEEECccc
Confidence            3567899999999876   4678887543

>CHL00134 petF ferredoxin; Validated

Probab=87.29  E-value=0.23  Score=28.40  Aligned_cols=27  Identities=11%  Similarity=0.059  Sum_probs=21.5

Q ss_pred             CCCCCccccceEeeCCCCCeEEEcCCcchh
Q 043887            8 LTETSHLGCQIVARPELDGICLALPAASRN   37 (48)
Q Consensus         8 ~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n   37 (48)
                      ..+..||+||.....   .++|++|..+.+
T Consensus        72 ~~~g~~L~C~~~~~~---d~~i~~~~~~~~   98 (99)
T CHL00134         72 LEAGFVLTCVAYPTS---DCTILTHQEEEL   98 (99)
T ss_pred             HhCCeEEEeeCEECC---CeEEEecccccc
Confidence            345788999999875   679999988764

>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions

Probab=85.30  E-value=0.32  Score=25.69  Aligned_cols=11  Identities=27%  Similarity=0.416  Sum_probs=8.7

Q ss_pred             CCccccceEee
Q 043887           11 TSHLGCQIVAR   21 (48)
Q Consensus        11 ~SRLsCQi~v~   21 (48)
                      ..||+||..++
T Consensus        68 ~~rLaCq~~~t   78 (78)
T PF00111_consen   68 GIRLACQTRVT   78 (78)
T ss_dssp             EEEEGGGSEES
T ss_pred             CCcCCcEEEeC
Confidence            45999999864

Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....

>COG3894 Uncharacterized metal-binding protein [General function prediction only]

Probab=82.95  E-value=0.57  Score=35.11  Aligned_cols=24  Identities=25%  Similarity=0.465  Sum_probs=20.5

Q ss_pred             CCCccccceEeeCCCCCeEEEcCCcch
Q 043887           10 ETSHLGCQIVARPELDGICLALPAASR   36 (48)
Q Consensus        10 ~~SRLsCQi~v~~~ldGl~V~vp~~~~   36 (48)
                      ...|||||..+.   ..++|.||++++
T Consensus        68 ~g~rlac~~~v~---gd~~i~ip~es~   91 (614)
T COG3894          68 RGYRLACQAQVL---GDLVIFIPPESR   91 (614)
T ss_pred             hceeeeeehhhc---CceEEEcCchhh
Confidence            378999999986   478999999886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	48
2wlb_A	103	Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of Schi		4e-06
2y5c_A	109	Structure Of Human Ferredoxin 2 (Fdx2)in Complex Wi		5e-04

>pdb|2WLB|A Chain A, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of Schizosaccharomyces Pombe Mitochondria Length = 103

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALP 32
           MLDLAFGL ETS LGCQ++ R +LDGI + +P
Sbjct: 72  MLDLAFGLEETSRLGCQVLLRKDLDGIRVRIP 103

>pdb|2Y5C|A Chain A, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With 2fe2s Cluster Length = 109

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 23/36 (63%)
Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASR 36
           MLD+A  L E S LGCQIV  PEL+G    LP  +R
Sbjct: 74  MLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITR 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	48
3ah7_A	113	[2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur	1e-14
3n9z_C	123	Adrenodoxin; cytochrome P450, 22-hydroxycholestero	2e-14
2y5c_A	109	Adrenodoxin-like protein, mitochondrial; electron	2e-14
3hui_A	126	Ferredoxin; cytochrome P450, electron transfer, ir	3e-14
2wlb_A	103	ETP1-FD, electron transfer protein 1, mitochondria	1e-12
2bt6_A	108	Adrenodoxin 1; ruthenium(II) bipyridyl complex, in	2e-12
1i7h_A	111	Ferredoxin; 2Fe-2S,electron transport; 1.70A {Esch	2e-12
3lxf_A	104	Ferredoxin; iron, iron-sulfur, metal-binding, meta	8e-12
1uwm_A	106	Ferredoxin VI, FDVI; electron transport, metal-bin	1e-10
1xlq_A	106	Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidored	1e-10
1b9r_A	105	Protein (terpredoxin); structure from molmol, ferr	1e-09
1l5p_A	93	Ferredoxin; [2Fe-2S] cluster, electron transfer, i	5e-08

>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida} Length = 113

 Score = 61.1 bits (149), Expect = 1e-14
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDG 42
           MLD A+GL   S LGCQ+    E   + + +P  S N A + 
Sbjct: 72  MLDKAWGLEAQSRLGCQVFVADE--DLTIEIPKYSLNHAAEA 111

>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A Length = 123

 Score = 60.4 bits (147), Expect = 2e-14
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGYVPK 46
           MLDLA+GLT+ S LGCQI     +D + + +P    +      V K
Sbjct: 76  MLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGK 121

>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens} Length = 109

 Score = 59.9 bits (146), Expect = 2e-14
 Identities = 20/36 (55%), Positives = 23/36 (63%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASR 36
           MLD+A  L E S LGCQIV  PEL+G    LP  +R
Sbjct: 74  MLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITR 109

>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris} Length = 126

 Score = 60.0 bits (146), Expect = 3e-14
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASR 36
           MLD  + +   S L CQI    ELDG+ +  P   R
Sbjct: 91  MLDFGYDVRPNSRLSCQIKVSNELDGLIVTTPERQR 126

>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe} Length = 103

 Score = 55.7 bits (135), Expect = 1e-12
 Identities = 21/32 (65%), Positives = 26/32 (81%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALP 32
           MLDLAFGL ETS LGCQ++ R +LDGI + +P
Sbjct: 72  MLDLAFGLEETSRLGCQVLLRKDLDGIRVRIP 103

>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C* Length = 108

 Score = 54.9 bits (133), Expect = 2e-12
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALP 32
           MLDLA+GLT+ S LGCQI     +D + + +P
Sbjct: 77  MLDLAYGLTDRSRLGCQICLTKAMDNMTVRVP 108

>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1 Length = 111

 Score = 54.9 bits (133), Expect = 2e-12
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFA 39
           MLD A+GL   S L CQ     E   + + +P  + N A
Sbjct: 72  MLDKAWGLEPESRLSCQARVTDE--DLVVEIPRYTINHA 108

>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} Length = 104

 Score = 53.4 bits (129), Expect = 8e-12
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALP 32
           +LD +   T  S L CQI    +L+G+ + + 
Sbjct: 70  LLDSSDHRTPHSRLSCQITINDKLEGLEVEIA 101

>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A Length = 106

 Score = 50.6 bits (122), Expect = 1e-10
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 1   MLDLAFGLT-ETSHLGCQIVARPELDGICLALP 32
           M+D A+     TS L CQI     LDG+ + LP
Sbjct: 70  MIDFAYEPNPATSRLTCQIKVTSLLDGLVVHLP 102

>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A Length = 106

 Score = 50.3 bits (121), Expect = 1e-10
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 1   MLD-LAFGLTETSHLGCQIVARPELDGICLALPA 33
           ML+ +   L   S L CQI+  PELDGI + +P 
Sbjct: 70  MLESVTAELKPNSRLCCQIIMTPELDGIVVDVPD 103

>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1 Length = 105

 Score = 47.9 bits (115), Expect = 1e-09
 Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 1   MLDLAF-GLTETSHLGCQIVARPELDGICLALP 32
           +L      +T  + L CQ+   P +DG+ + +P
Sbjct: 70  LLQSTGEPMTAGTRLSCQVFIDPSMDGLIVRVP 102

>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1 Length = 93

 Score = 43.3 bits (103), Expect = 5e-08
 Identities = 7/31 (22%), Positives = 9/31 (29%)

Query: 1  MLDLAFGLTETSHLGCQIVARPELDGICLAL 31
            +        + L C I    E DG    L
Sbjct: 63 EKEFLEDQPANARLACAITLSGENDGAVFEL 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	48
3n9z_C	123	Adrenodoxin; cytochrome P450, 22-hydroxycholestero	99.21
3hui_A	126	Ferredoxin; cytochrome P450, electron transfer, ir	99.01
3lxf_A	104	Ferredoxin; iron, iron-sulfur, metal-binding, meta	98.94
2y5c_A	109	Adrenodoxin-like protein, mitochondrial; electron	98.89
2bt6_A	108	Adrenodoxin 1; ruthenium(II) bipyridyl complex, in	98.88
1uwm_A	106	Ferredoxin VI, FDVI; electron transport, metal-bin	98.63
1xlq_A	106	Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidored	98.59
1b9r_A	105	Protein (terpredoxin); structure from molmol, ferr	98.59
2wlb_A	103	ETP1-FD, electron transfer protein 1, mitochondria	98.57
3ah7_A	113	[2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur	98.5
1l5p_A	93	Ferredoxin; [2Fe-2S] cluster, electron transfer, i	98.21
1i7h_A	111	Ferredoxin; 2Fe-2S,electron transport; 1.70A {Esch	98.18
1a70_A	97	Ferredoxin; iron-sulfur protein, photosynthesis, e	96.71
1awd_A	94	Ferredoxin; electron transport, eukaryotic, green	96.52
1czp_A	98	Ferredoxin I; [2Fe-2S] protein, crystal reduced wi	96.44
1wri_A	93	Ferredoxin II, ferredoxin; electron transport; 1.2	96.38
1iue_A	98	Ferredoxin; electron transport, iron-sulfur; 1.70A	96.35
1frr_A	95	Ferredoxin I; electron transfer(iron-sulfur protei	96.19
1frd_A	98	Heterocyst [2Fe-2S] ferredoxin; electron transport	95.98
1jq4_A	98	Methane monooxygenase component C; [2Fe-2S] ferred	95.34
1doi_A	128	2Fe-2S ferredoxin; halophilic protein, redox prote	94.64
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	93.92
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	90.07

>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A

Probab=99.21  E-value=9.7e-13  Score=77.85  Aligned_cols=41  Identities=39%  Similarity=0.713  Sum_probs=6.3

Q ss_pred             CcccCCCCCCCCccccceEeeCCCCCeEEEcCCcchheeec
Q 043887            1 MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVD   41 (48)
Q Consensus         1 mLd~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~~~   41 (48)
                      ||+.++++.++||||||+.++++|||++|+||...+++...
T Consensus        76 ~L~~~~~~~~~~RLaCQ~~v~~~ld~l~V~ip~~~~~~~~~  116 (123)
T 3n9z_C           76 MLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQS  116 (123)
T ss_dssp             HHCC--------CBCC-------------------------
T ss_pred             hhcccccccCCeEEeeEeEEccCCCCEEEEECcccccccee
Confidence            35667788999999999999999999999999999877643

>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}

Probab=99.01  E-value=6.4e-11  Score=70.32  Aligned_cols=35  Identities=37%  Similarity=0.708  Sum_probs=30.8

Q ss_pred             cccCCCCCCCCccccceEeeCCCCCeEEEcCCcch
Q 043887            2 LDLAFGLTETSHLGCQIVARPELDGICLALPAASR   36 (48)
Q Consensus         2 Ld~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~   36 (48)
                      |+.+.++.+++|||||+.+..+|||++|+||+.++
T Consensus        92 L~~~~e~~~g~RLaCQ~~~~~dldgl~V~lp~~~r  126 (126)
T 3hui_A           92 LDFGYDVRPNSRLSCQIKVSNELDGLIVTTPERQR  126 (126)
T ss_dssp             HTTSSSCCTTEEEGGGCBCCGGGTTEEEECCSCCC
T ss_pred             cCchhhccCCeEEeeeCEECcCCCcEEEEecCcCC
Confidence            44467788999999999999999999999999874

>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0

Probab=98.94  E-value=1.3e-10  Score=66.38  Aligned_cols=34  Identities=29%  Similarity=0.447  Sum_probs=29.5

Q ss_pred             cccCCCCCCCCccccceEeeCCCCCeEEEcCCcc
Q 043887            2 LDLAFGLTETSHLGCQIVARPELDGICLALPAAS   35 (48)
Q Consensus         2 Ld~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~   35 (48)
                      |+.+.++.+++|||||+.+..+|||++|+||+.+
T Consensus        71 L~~~~~~~~g~rLaCq~~~~~dl~gl~v~ip~~~  104 (104)
T 3lxf_A           71 LDSSDHRTPHSRLSCQITINDKLEGLEVEIAPED  104 (104)
T ss_dssp             HHTSTTCCTTEEEGGGCBCCGGGTTCEEEECCCC
T ss_pred             hccccccCCCcEEEeeCEEccCCCCEEEEecCCC
Confidence            3445678899999999999999999999999864

>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}

Probab=98.89  E-value=2.6e-10  Score=64.90  Aligned_cols=35  Identities=54%  Similarity=0.831  Sum_probs=29.8

Q ss_pred             cccCCCCCCCCccccceEeeCCCCCeEEEcCCcch
Q 043887            2 LDLAFGLTETSHLGCQIVARPELDGICLALPAASR   36 (48)
Q Consensus         2 Ld~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~   36 (48)
                      |+.+.+..+++|||||+.+..++||++|++|+.++
T Consensus        75 L~~~~~~~~g~rLaCq~~~~~d~~~~~v~ip~~~~  109 (109)
T 2y5c_A           75 LDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITR  109 (109)
T ss_dssp             HHTSTTCCTTEEEGGGCBCCGGGTTCEEECCSCCC
T ss_pred             HhccccCCCCcEeeEEeEEecCCCeEEEEecCCCC
Confidence            33356788999999999999999999999998653

>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*

Probab=98.88  E-value=3.6e-10  Score=64.12  Aligned_cols=31  Identities=48%  Similarity=0.923  Sum_probs=27.5

Q ss_pred             cccCCCCCCCCccccceEeeCCCCCeEEEcC
Q 043887            2 LDLAFGLTETSHLGCQIVARPELDGICLALP   32 (48)
Q Consensus         2 Ld~a~~~~~~SRLsCQi~v~~~ldGl~V~vp   32 (48)
                      |+.+.++.++||||||+.+.+++||++|+||
T Consensus        78 L~~~~~~~~g~rLaCq~~~~~d~d~~~V~~p  108 (108)
T 2bt6_A           78 LDLAYGLTDRSRLGCQICLTKAMDNMTVRVP  108 (108)
T ss_dssp             HTTCTTCCTTEEEGGGCBCCGGGTTEEEECC
T ss_pred             HhCcccCCCCcEeeEEEEecCCCCCEEEEcC
Confidence            4445778899999999999999999999997

>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A

Probab=98.63  E-value=7.8e-09  Score=58.27  Aligned_cols=34  Identities=38%  Similarity=0.658  Sum_probs=28.6

Q ss_pred             cccCCCCC-CCCccccceEeeCCCCCeEEEcCCcc
Q 043887            2 LDLAFGLT-ETSHLGCQIVARPELDGICLALPAAS   35 (48)
Q Consensus         2 Ld~a~~~~-~~SRLsCQi~v~~~ldGl~V~vp~~~   35 (48)
                      |+.+.++. +++||+||+.+..+++|++|++|+.+
T Consensus        71 L~~~~~~~~~g~rLaCq~~~~~d~~~l~v~~p~~~  105 (106)
T 1uwm_A           71 IDFAYEPNPATSRLTCQIKVTSLLDGLVVHLPEKQ  105 (106)
T ss_dssp             HTTSSSCCTTTEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             hcCccccCCCCcEecccCEEccCCCCEEEEecCCC
Confidence            33344677 89999999999999999999999865

>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A

Probab=98.59  E-value=1.1e-08  Score=57.62  Aligned_cols=33  Identities=36%  Similarity=0.629  Sum_probs=27.8

Q ss_pred             ccCCCC-CCCCccccceEeeCCCCCeEEEcCCcc
Q 043887            3 DLAFGL-TETSHLGCQIVARPELDGICLALPAAS   35 (48)
Q Consensus         3 d~a~~~-~~~SRLsCQi~v~~~ldGl~V~vp~~~   35 (48)
                      +.+.+. .+++||+||+.+..+++|++|++|+.+
T Consensus        72 ~~~~~~~~~g~rLaCq~~~~~d~~~l~v~~p~~~  105 (106)
T 1xlq_A           72 ESVTAELKPNSRLCCQIIMTPELDGIVVDVPDRQ  105 (106)
T ss_dssp             TTCSSCCCTTEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             hcccccCCCCcEeeeeeEeecCCCCEEEEecCcc
Confidence            333446 789999999999999999999999865

>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1

Probab=98.59  E-value=1.7e-08  Score=56.82  Aligned_cols=30  Identities=27%  Similarity=0.615  Sum_probs=27.0

Q ss_pred             CCCCCCCCccccceEeeCCCCCeEEEcCCc
Q 043887            5 AFGLTETSHLGCQIVARPELDGICLALPAA   34 (48)
Q Consensus         5 a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~   34 (48)
                      +.++.+++||+||+.+..+++|++|++|+.
T Consensus        75 ~~~~~~g~rLaCq~~~~~~~~~l~v~~p~~  104 (105)
T 1b9r_A           75 GEPMTAGTRLSCQVFIDPSMDGLIVRVPLP  104 (105)
T ss_dssp             CCCCCTTBSCGGGCCCCTTSTTEEEECCSC
T ss_pred             cccCCCCcEeeeeCEecCCCCcEEEEecCC
Confidence            467788999999999999999999999964

>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}

Probab=98.57  E-value=1.2e-08  Score=57.20  Aligned_cols=31  Identities=65%  Similarity=1.133  Sum_probs=26.7

Q ss_pred             cccCCCCCCCCccccceEeeCCCCCeEEEcC
Q 043887            2 LDLAFGLTETSHLGCQIVARPELDGICLALP   32 (48)
Q Consensus         2 Ld~a~~~~~~SRLsCQi~v~~~ldGl~V~vp   32 (48)
                      |+.+.+..+++||+||+.+..++||++|++|
T Consensus        73 L~~~~~~~~g~rLaCq~~~~~d~~~l~v~lp  103 (103)
T 2wlb_A           73 LDLAFGLEETSRLGCQVLLRKDLDGIRVRIP  103 (103)
T ss_dssp             HTTBTTCCTTEEEGGGCBCCGGGTTEEEECC
T ss_pred             HhcccCCCCCcEeeEeeEeCCCCCcEEEEcC
Confidence            3444567889999999999999999999997

>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}

Probab=98.50  E-value=3.8e-08  Score=56.07  Aligned_cols=37  Identities=35%  Similarity=0.622  Sum_probs=29.9

Q ss_pred             CCCCCCCCccccceEeeCCCCCeEEEcCCcchheeecCC
Q 043887            5 AFGLTETSHLGCQIVARPELDGICLALPAASRNFAVDGY   43 (48)
Q Consensus         5 a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~~~~~   43 (48)
                      +++..+++||+||+.+.++  +++|++|..+.|.+.||+
T Consensus        76 ~~~~~~g~rLaCq~~~~~~--dl~v~~~~~~~~~~~~~~  112 (113)
T 3ah7_A           76 AWGLEAQSRLGCQVFVADE--DLTIEIPKYSLNHAAEAP  112 (113)
T ss_dssp             STTCCTTEEEGGGCBCCSS--CEEEECCSCCCCCCC---
T ss_pred             ccccCCCcEEeeeCEEeCC--CEEEEECchhhhhhhccC
Confidence            3467889999999999754  899999999999999985

>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1

Probab=98.21  E-value=2.6e-07  Score=51.22  Aligned_cols=25  Identities=28%  Similarity=0.464  Sum_probs=23.1

Q ss_pred             CCCCCCccccceEeeCCCCCeEEEc
Q 043887            7 GLTETSHLGCQIVARPELDGICLAL   31 (48)
Q Consensus         7 ~~~~~SRLsCQi~v~~~ldGl~V~v   31 (48)
                      +..+++||+||+.+..+++|++|+|
T Consensus        69 ~~~~g~rLaCq~~~~~d~~g~~v~~   93 (93)
T 1l5p_A           69 DQPANARLACAITLSGENDGAVFEL   93 (93)
T ss_dssp             TSCTTEEEGGGCEECGGGTTCEEEC
T ss_pred             CCCCCcEEeeECEECCCCCceEEEC
Confidence            6778999999999999999999986

>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1

Probab=98.18  E-value=5.2e-07  Score=51.21  Aligned_cols=35  Identities=31%  Similarity=0.529  Sum_probs=28.5

Q ss_pred             CCCCCCCCccccceEeeCCCCCeEEEcCCcchheeec
Q 043887            5 AFGLTETSHLGCQIVARPELDGICLALPAASRNFAVD   41 (48)
Q Consensus         5 a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~~~   41 (48)
                      +.+..+++||+||+.+..+  +++|++|+.+.|++.|
T Consensus        76 ~~~~~~g~rLaCq~~~~~~--dl~v~~~~~~~~~~~~  110 (111)
T 1i7h_A           76 AWGLEPESRLSCQARVTDE--DLVVEIPRYTINHARE  110 (111)
T ss_dssp             CTTCCTTEEETTTCBCCSS--CEEEECCSCCCCTTCC
T ss_pred             ccccCCCcEEEEEEEEeCC--CEEEEEChHHhhhhcc
Confidence            3456789999999998644  8999999999887763

>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A

Probab=96.71  E-value=0.00079  Score=37.06  Aligned_cols=26  Identities=12%  Similarity=0.078  Sum_probs=21.4

Q ss_pred             CCCccccceEeeCCCCCeEEEcCCcchhe
Q 043887           10 ETSHLGCQIVARPELDGICLALPAASRNF   38 (48)
Q Consensus        10 ~~SRLsCQi~v~~~ldGl~V~vp~~~~n~   38 (48)
                      .++||+||..+..   +++|++|+.+..+
T Consensus        71 ~g~~LaCq~~~~~---d~~v~~~~~~~~~   96 (97)
T 1a70_A           71 EGWVLTCAAYPVS---DVTIETHKKEELT   96 (97)
T ss_dssp             HTEEEGGGCEESS---CEEEECCCGGGCC
T ss_pred             CCeEEEeECEECC---CEEEEeCchhhcc
Confidence            5689999999876   4999999877643

>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1

Probab=96.52  E-value=0.0014  Score=35.73  Aligned_cols=25  Identities=8%  Similarity=0.108  Sum_probs=20.7

Q ss_pred             CCCCccccceEeeCCCCCeEEEcCCcch
Q 043887            9 TETSHLGCQIVARPELDGICLALPAASR   36 (48)
Q Consensus         9 ~~~SRLsCQi~v~~~ldGl~V~vp~~~~   36 (48)
                      .+++||+||..+..   +++|++|+.+.
T Consensus        68 ~~g~~LaCq~~~~~---d~~i~~~~~~~   92 (94)
T 1awd_A           68 GKGFVLTCVAYPTS---DVTILTHQEAA   92 (94)
T ss_dssp             HTTEEEGGGCEESS---CEEEECCCGGG
T ss_pred             hCCcEEeeECEECC---CEEEEecchhc
Confidence            35789999999875   79999998764

>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...

Probab=96.44  E-value=0.0017  Score=35.69  Aligned_cols=24  Identities=8%  Similarity=0.133  Sum_probs=20.0

Q ss_pred             CCCccccceEeeCCCCCeEEEcCCcch
Q 043887           10 ETSHLGCQIVARPELDGICLALPAASR   36 (48)
Q Consensus        10 ~~SRLsCQi~v~~~ldGl~V~vp~~~~   36 (48)
                      +++||+||..+..   +++|++|+.+.
T Consensus        73 ~g~~LaCq~~~~~---d~~v~~~~~~~   96 (98)
T 1czp_A           73 AGYVLTCVAYPTS---DVVIQTHKEED   96 (98)
T ss_dssp             TTEEEGGGCEESS---CEEEECCCTTT
T ss_pred             CCeEEeeeCEECC---CEEEEeccccc
Confidence            5789999999876   58999998654

>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1

Probab=96.38  E-value=0.0017  Score=35.45  Aligned_cols=24  Identities=8%  Similarity=0.227  Sum_probs=19.9

Q ss_pred             CCCCccccceEeeCCCCCeEEEcCCcc
Q 043887            9 TETSHLGCQIVARPELDGICLALPAAS   35 (48)
Q Consensus         9 ~~~SRLsCQi~v~~~ldGl~V~vp~~~   35 (48)
                      ..++||+||..+..   +++|++|+.+
T Consensus        68 ~~g~~LaCq~~~~~---d~~v~~~~~~   91 (93)
T 1wri_A           68 EQGYVLTCIAIPES---DVVIETHKED   91 (93)
T ss_dssp             HTTEEETTTCEESS---CEEEECCCGG
T ss_pred             hCCcEEeeeCEECC---CEEEEecccc
Confidence            35789999999876   4899999865

>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1

Probab=96.35  E-value=0.0012  Score=36.43  Aligned_cols=26  Identities=8%  Similarity=0.086  Sum_probs=21.3

Q ss_pred             CCCCccccceEeeCCCCCeEEEcCCcchh
Q 043887            9 TETSHLGCQIVARPELDGICLALPAASRN   37 (48)
Q Consensus         9 ~~~SRLsCQi~v~~~ldGl~V~vp~~~~n   37 (48)
                      ..++||+||..+..   +++|++|+.+..
T Consensus        70 ~~g~~LaCq~~~~~---d~~i~~~~~~~~   95 (98)
T 1iue_A           70 KKKYILLCTCYPKS---DCVIETHKEDEL   95 (98)
T ss_dssp             HTTEEEGGGCEESS---CEEEECCCHHHH
T ss_pred             hCCeEEEeECEECC---CeEEEeCChHhh
Confidence            35789999999875   699999987654

>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1

Probab=96.19  E-value=0.0028  Score=34.29  Aligned_cols=25  Identities=12%  Similarity=0.228  Sum_probs=20.4

Q ss_pred             CCCCccccceEeeCCCCCeEEEcCCcch
Q 043887            9 TETSHLGCQIVARPELDGICLALPAASR   36 (48)
Q Consensus         9 ~~~SRLsCQi~v~~~ldGl~V~vp~~~~   36 (48)
                      ...+||+||..+.+   |++|++|+...
T Consensus        69 ~~g~~LaC~~~~~~---~~~v~~~~~~~   93 (95)
T 1frr_A           69 EEGFVLTCIAIPES---DLVIETHKEEE   93 (95)
T ss_dssp             HTTEEETTTCEESS---CEEEECCCTTT
T ss_pred             hCCcEEeeECEECC---CEEEEEcchhh
Confidence            35689999999875   79999987654

>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1

Probab=95.98  E-value=0.0038  Score=34.05  Aligned_cols=24  Identities=13%  Similarity=0.099  Sum_probs=19.7

Q ss_pred             CCCccccceEeeCCCCCeEEEcCCcch
Q 043887           10 ETSHLGCQIVARPELDGICLALPAASR   36 (48)
Q Consensus        10 ~~SRLsCQi~v~~~ldGl~V~vp~~~~   36 (48)
                      .++||+||..+..   +++|++|+...
T Consensus        73 ~g~~LaC~~~~~~---d~~v~~~~~~~   96 (98)
T 1frd_A           73 KGFALLCVTYPRS---NCTIKTHQEPY   96 (98)
T ss_dssp             TTEEEGGGCEESS---SEEEECCCGGG
T ss_pred             CCcEEEeECEECC---CEEEEecchhh
Confidence            5699999999875   68999987653

>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2

Probab=95.34  E-value=0.0054  Score=33.51  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=17.4

Q ss_pred             CCccccceEeeCCCCCeEEEcCCc
Q 043887           11 TSHLGCQIVARPELDGICLALPAA   34 (48)
Q Consensus        11 ~SRLsCQi~v~~~ldGl~V~vp~~   34 (48)
                      ++||+||..+..   +++|++|..
T Consensus        77 g~~LaCq~~~~~---d~~v~~~~~   97 (98)
T 1jq4_A           77 GLVLLCRTYPKT---DLEIELPYT   97 (98)
T ss_dssp             HCBCTTTCCSSC---CSEEECSCC
T ss_pred             CcEEEeeCEECC---CEEEEecCC
Confidence            589999999875   589999864

>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A

Probab=94.64  E-value=0.0062  Score=35.61  Aligned_cols=30  Identities=10%  Similarity=0.176  Sum_probs=21.8

Q ss_pred             CCCCCccccceEeeCCCCCeEEEcCCcchhee
Q 043887            8 LTETSHLGCQIVARPELDGICLALPAASRNFA   39 (48)
Q Consensus         8 ~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~   39 (48)
                      ...++||+||..+..+  .++|++.....+.+
T Consensus        94 ~~~g~rLaCq~~~~~d--~i~i~~~~~~~~~~  123 (128)
T 1doi_A           94 EDKNVRLTCIGSPDAD--EVKIVYNAKHLDYL  123 (128)
T ss_dssp             HTSCEEEGGGEEECSS--EEEEEECGGGSGGG
T ss_pred             ccCCEEEEEEeEEcCC--eEEEEecCCCcchh
Confidence            4578999999998875  68887665544433

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=93.92  E-value=0.024  Score=36.05  Aligned_cols=23  Identities=17%  Similarity=0.291  Sum_probs=19.0

Q ss_pred             CCCCccccceEeeCCCCCeEEEcCCc
Q 043887            9 TETSHLGCQIVARPELDGICLALPAA   34 (48)
Q Consensus         9 ~~~SRLsCQi~v~~~ldGl~V~vp~~   34 (48)
                      ..++||+||..+.+   +++|++|..
T Consensus        76 ~~g~~LaCq~~~~~---~~~v~~~~~   98 (338)
T 1krh_A           76 QQGYVLACQCRPTS---DAVFQIQAS   98 (338)
T ss_dssp             HHTEEETTTCEESS---SEEEEESSC
T ss_pred             hCCeEEEEeCEECC---CeEEEEecc
Confidence            34689999999976   589999875

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}

Probab=90.07  E-value=0.16  Score=36.66  Aligned_cols=26  Identities=23%  Similarity=0.482  Sum_probs=21.3

Q ss_pred             CCCCCccccceEeeCCCCCeEEEcCCcch
Q 043887            8 LTETSHLGCQIVARPELDGICLALPAASR   36 (48)
Q Consensus         8 ~~~~SRLsCQi~v~~~ldGl~V~vp~~~~   36 (48)
                      ..+++||+||.....   +++|++|..+.
T Consensus        69 ~~~G~rLaCqa~~~s---Dl~Ielp~~~~   94 (631)
T 3zyy_X           69 IAQGYVLACQTYPES---DLIIEIPFDSR   94 (631)
T ss_dssp             HHTTEEETTTEEECS---SEEEECCTTSS
T ss_pred             hcCCcEEeeeCEECC---CEEEEecchhh
Confidence            345799999999885   58999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	48
d1b9ra_	105	d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp.,	4e-06
d1xlqa1	106	d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas	5e-06
d2bt6a1	104	d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [	7e-06
d1i7ha_	109	d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escheri	4e-05
d1e9ma_	106	d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsu	7e-04
d1l5pa_	93	d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vagin	0.001

>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas sp., terpredoxin [TaxId: 306]

 Score = 37.7 bits (87), Expect = 4e-06
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAAS 35
           +      +T  + L CQ+   P +DG+ + +P  +
Sbjct: 71  LQSTGEPMTAGTRLSCQVFIDPSMDGLIVRVPLPA 105

>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]} Length = 106

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas putida, putidaredoxin [TaxId: 303]

 Score = 37.3 bits (86), Expect = 5e-06
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALP 32
           +  +   L   S L CQI+  PELDGI + +P
Sbjct: 71  LESVTAELKPNSRLCCQIIMTPELDGIVVDVP 102

>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]} Length = 104

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (85), Expect = 7e-06
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALP 32
           MLDLA+GLT+ S LGCQI     +D + + +P
Sbjct: 73  MLDLAYGLTDRSRLGCQICLTKAMDNMTVRVP 104

>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]} Length = 109

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin-like ferredoxin
species: Escherichia coli [TaxId: 562]

 Score = 35.4 bits (81), Expect = 4e-05
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 1   MLDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFA 39
           MLD A+GL   S L CQ   R   + + + +P  + N A
Sbjct: 71  MLDKAWGLEPESRLSCQA--RVTDEDLVVEIPRYTINHA 107

>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]} Length = 106

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]

 Score = 31.9 bits (72), Expect = 7e-04
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 1   MLDLAFGLTE-TSHLGCQIVARPELDGICLALP 32
           M+D A+     TS L CQI     LDG+ + LP
Sbjct: 70  MIDFAYEPNPATSRLTCQIKVTSLLDGLVVHLP 102

>d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Trichomonas vaginalis [TaxId: 5722]

 Score = 31.5 bits (71), Expect = 0.001
 Identities = 7/31 (22%), Positives = 9/31 (29%)

Query: 1  MLDLAFGLTETSHLGCQIVARPELDGICLAL 31
            +        + L C I    E DG    L
Sbjct: 63 EKEFLEDQPANARLACAITLSGENDGAVFEL 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	48
d2bt6a1	104	Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}	99.35
d1xlqa1	106	2Fe-2S ferredoxin {Pseudomonas putida, putidaredox	99.32
d1e9ma_	106	2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredo	99.23
d1b9ra_	105	2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [T	99.2
d1l5pa_	93	2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5	98.99
d1i7ha_	109	Adrenodoxin-like ferredoxin {Escherichia coli [Tax	98.98
d2fug33	95	Nadh-quinone oxidoreductase chain 3, Nqo3, N-termi	95.99
d1jq4a_	98	Methane monooxygenase reductase N-terminal domain	94.68
d1krha3	104	Benzoate dioxygenase reductase, N-terminal domain	93.63
d1frda_	98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	92.12
d1frra_	95	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	89.69
d1a70a_	97	2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [Ta	89.39
d1czpa_	98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	88.09
d1iuea_	98	2Fe-2S ferredoxin {Malaria parasite (Plasmodium fa	86.89
d1jjcb2	75	Domains B1 and B5 of PheRS-beta, PheT {Thermus the	80.03

>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.35  E-value=5.7e-14  Score=79.41  Aligned_cols=32  Identities=50%  Similarity=0.939  Sum_probs=29.9

Q ss_pred             CcccCCCCCCCCccccceEeeCCCCCeEEEcC
Q 043887            1 MLDLAFGLTETSHLGCQIVARPELDGICLALP   32 (48)
Q Consensus         1 mLd~a~~~~~~SRLsCQi~v~~~ldGl~V~vp   32 (48)
                      ||+.+.++.++||||||+.+++++||++|+||
T Consensus        73 ~L~~~~~~~~~sRLaCQi~l~~~ldgl~V~vP  104 (104)
T d2bt6a1          73 MLDLAYGLTDRSRLGCQICLTKAMDNMTVRVP  104 (104)
T ss_dssp             HHTTCTTCCTTEEEGGGCBCCGGGTTEEEECC
T ss_pred             HhhccCCCCcCeEEeeeCEeeccCCCEEEecC
Confidence            46778899999999999999999999999998

>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas putida, putidaredoxin [TaxId: 303]

Probab=99.32  E-value=1.4e-13  Score=78.01  Aligned_cols=35  Identities=40%  Similarity=0.709  Sum_probs=30.5

Q ss_pred             cc-cCCCCCCCCccccceEeeCCCCCeEEEcCCcch
Q 043887            2 LD-LAFGLTETSHLGCQIVARPELDGICLALPAASR   36 (48)
Q Consensus         2 Ld-~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~   36 (48)
                      |+ .+.++.++||||||+.++.+|||++|+||+.++
T Consensus        71 L~~~~~~~~~~sRLaCQ~~v~~~~dgl~V~vPe~q~  106 (106)
T d1xlqa1          71 LESVTAELKPNSRLCCQIIMTPELDGIVVDVPDRQW  106 (106)
T ss_dssp             HTTCSSCCCTTEEEGGGCBCCGGGTTEEEECCSCCC
T ss_pred             HHhhhccCCCCcEeeeeeEecccCCCEEEECCCccC
Confidence            44 356788999999999999999999999999763

>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]

Probab=99.23  E-value=8.4e-13  Score=74.46  Aligned_cols=34  Identities=38%  Similarity=0.647  Sum_probs=28.6

Q ss_pred             cccCCC-CCCCCccccceEeeCCCCCeEEEcCCcc
Q 043887            2 LDLAFG-LTETSHLGCQIVARPELDGICLALPAAS   35 (48)
Q Consensus         2 Ld~a~~-~~~~SRLsCQi~v~~~ldGl~V~vp~~~   35 (48)
                      |+.+.+ ..++||||||+.++++++|++|+||+.+
T Consensus        71 L~~~~~~~~~~sRLaCQ~~v~~d~~gl~V~iPe~q  105 (106)
T d1e9ma_          71 IDFAYEPNPATSRLTCQIKVTSLLDGLVVHLPEKQ  105 (106)
T ss_dssp             HTTSSSCCTTTEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             HhhccccCCCceEeeEeCEeccccCCEEEECCccc
Confidence            455554 4469999999999999999999999876

>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas sp., terpredoxin [TaxId: 306]

Probab=99.20  E-value=2.1e-12  Score=72.98  Aligned_cols=30  Identities=27%  Similarity=0.615  Sum_probs=27.1

Q ss_pred             CCCCCCCCccccceEeeCCCCCeEEEcCCc
Q 043887            5 AFGLTETSHLGCQIVARPELDGICLALPAA   34 (48)
Q Consensus         5 a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~   34 (48)
                      +.++.++||||||++++.+|||++|+||-.
T Consensus        75 ~~~~~~~sRLaCQ~~v~~dldgl~V~vP~~  104 (105)
T d1b9ra_          75 GEPMTAGTRLSCQVFIDPSMDGLIVRVPLP  104 (105)
T ss_dssp             CCCCCTTBSCGGGCCCCTTSTTEEEECCSC
T ss_pred             cccCCCCcEeEeeeEecccCCCeEEEecCC
Confidence            456789999999999999999999999964

>d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Trichomonas vaginalis [TaxId: 5722]

Probab=98.99  E-value=3.2e-11  Score=67.17  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=24.5

Q ss_pred             CCCCCCCCccccceEeeCCCCCeEEEc
Q 043887            5 AFGLTETSHLGCQIVARPELDGICLAL   31 (48)
Q Consensus         5 a~~~~~~SRLsCQi~v~~~ldGl~V~v   31 (48)
                      ..++.++||||||++++++|||++|+|
T Consensus        67 l~~~~~~~RLaCQi~l~~eldg~~v~~   93 (93)
T d1l5pa_          67 LEDQPANARLACAITLSGENDGAVFEL   93 (93)
T ss_dssp             HTTSCTTEEEGGGCEECGGGTTCEEEC
T ss_pred             hhccCCCcEEEEEeEeccccCCeEEEC
Confidence            356789999999999999999999986

>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin-like ferredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=5.5e-11  Score=67.19  Aligned_cols=38  Identities=34%  Similarity=0.545  Sum_probs=31.9

Q ss_pred             cccCCCCCCCCccccceEeeCCCCCeEEEcCCcchheeec
Q 043887            2 LDLAFGLTETSHLGCQIVARPELDGICLALPAASRNFAVD   41 (48)
Q Consensus         2 Ld~a~~~~~~SRLsCQi~v~~~ldGl~V~vp~~~~n~~~~   41 (48)
                      |+...+..++||||||+++..+  |++|+||+.++|.+.|
T Consensus        72 l~~~~~~~~~~RLaCQ~~v~~~--dl~V~lP~~t~~~~~e  109 (109)
T d1i7ha_          72 LDKAWGLEPESRLSCQARVTDE--DLVVEIPRYTINHARE  109 (109)
T ss_dssp             HTTCTTCCTTEEETTTCBCCSS--CEEEECCSCCCCTTCC
T ss_pred             hhccccCCCCeEEEEeeEECCC--CEEEEeCccchhhccC
Confidence            4556677889999999999874  9999999999987654

>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.99  E-value=0.0012  Score=34.88  Aligned_cols=20  Identities=10%  Similarity=0.237  Sum_probs=16.0

Q ss_pred             CCCCCccccceEeeCCCCCeEEE
Q 043887            8 LTETSHLGCQIVARPELDGICLA   30 (48)
Q Consensus         8 ~~~~SRLsCQi~v~~~ldGl~V~   30 (48)
                      ..+..|||||..+.+   ||+|+
T Consensus        75 ~~~~~rlaCqt~v~~---gm~V~   94 (95)
T d2fug33          75 WQPKLAASCVTAVAD---GMVVD   94 (95)
T ss_dssp             BCSSCEETTTCBCCT---TCEEE
T ss_pred             cCCCccCcCcCCCCC---CCEEe
Confidence            356899999999974   77875

>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Methane monooxygenase reductase N-terminal domain
species: Methylococcus capsulatus [TaxId: 414]

Probab=94.68  E-value=0.0034  Score=33.53  Aligned_cols=21  Identities=24%  Similarity=0.431  Sum_probs=17.1

Q ss_pred             CCCccccceEeeCCCCCeEEEcCC
Q 043887           10 ETSHLGCQIVARPELDGICLALPA   33 (48)
Q Consensus        10 ~~SRLsCQi~v~~~ldGl~V~vp~   33 (48)
                      .+.||+||..+..+   ++|+||.
T Consensus        76 ~g~~L~Cq~~~~sD---~~i~lp~   96 (98)
T d1jq4a_          76 EGLVLLCRTYPKTD---LEIELPY   96 (98)
T ss_dssp             HHCBCTTTCCSSCC---SEEECSC
T ss_pred             cCeEEeccCEECCC---EEEEeCC
Confidence            35799999998764   7999984

>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Benzoate dioxygenase reductase, N-terminal domain
species: Acinetobacter sp. [TaxId: 472]

Probab=93.63  E-value=0.016  Score=31.30  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=19.7

Q ss_pred             CCCccccceEeeCCCCCeEEEcCCcch
Q 043887           10 ETSHLGCQIVARPELDGICLALPAASR   36 (48)
Q Consensus        10 ~~SRLsCQi~v~~~ldGl~V~vp~~~~   36 (48)
                      .+.||+||..+..   +++|+||....
T Consensus        76 ~g~~LaCq~~~~~---d~~i~i~~~~e   99 (104)
T d1krha3          76 QGYVLACQCRPTS---DAVFQIQASSE   99 (104)
T ss_dssp             HTEEETTTCEESS---SEEEEESSCTT
T ss_pred             cCcEEeeeCEECC---CEEEEecCcch
Confidence            4579999999875   58999998764

>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

Probab=92.12  E-value=0.042  Score=29.08  Aligned_cols=24  Identities=13%  Similarity=0.099  Sum_probs=19.4

Q ss_pred             CCCccccceEeeCCCCCeEEEcCCcch
Q 043887           10 ETSHLGCQIVARPELDGICLALPAASR   36 (48)
Q Consensus        10 ~~SRLsCQi~v~~~ldGl~V~vp~~~~   36 (48)
                      ...||+||.....   +++|+++++..
T Consensus        73 ~g~~L~C~~~~~~---D~~Ie~~~e~~   96 (98)
T d1frda_          73 KGFALLCVTYPRS---NCTIKTHQEPY   96 (98)
T ss_dssp             TTEEEGGGCEESS---SEEEECCCGGG
T ss_pred             CCeEEeeeCEECC---CEEEEeCCccc
Confidence            4679999999866   58999987754

>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

Probab=89.69  E-value=0.1  Score=27.55  Aligned_cols=25  Identities=12%  Similarity=0.228  Sum_probs=20.1

Q ss_pred             CCCCccccceEeeCCCCCeEEEcCCcch
Q 043887            9 TETSHLGCQIVARPELDGICLALPAASR   36 (48)
Q Consensus         9 ~~~SRLsCQi~v~~~ldGl~V~vp~~~~   36 (48)
                      ....||+||.....   .++|++|.+..
T Consensus        69 ~~g~~L~C~~~~~~---d~~ie~~~e~~   93 (95)
T d1frra_          69 EEGFVLTCIAIPES---DLVIETHKEEE   93 (95)
T ss_dssp             HTTEEETTTCEESS---CEEEECCCTTT
T ss_pred             hcCcEEeeeCEECC---CEEEEecCccc
Confidence            34679999999876   58999998754

>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=89.39  E-value=0.092  Score=27.71  Aligned_cols=24  Identities=13%  Similarity=0.151  Sum_probs=19.0

Q ss_pred             CCCCccccceEeeCCCCCeEEEcCCcc
Q 043887            9 TETSHLGCQIVARPELDGICLALPAAS   35 (48)
Q Consensus         9 ~~~SRLsCQi~v~~~ldGl~V~vp~~~   35 (48)
                      ....||+||.....   .++|++|.++
T Consensus        70 ~~g~~L~C~~~~~~---D~~Ie~~~e~   93 (97)
T d1a70a_          70 DEGWVLTCAAYPVS---DVTIETHKKE   93 (97)
T ss_dssp             HHTEEEGGGCEESS---CEEEECCCGG
T ss_pred             cCCeEEeeeCEECC---CEEEEcCChh
Confidence            34679999999975   5899998764

>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

Probab=88.09  E-value=0.15  Score=26.92  Aligned_cols=24  Identities=8%  Similarity=0.133  Sum_probs=19.3

Q ss_pred             CCCccccceEeeCCCCCeEEEcCCcch
Q 043887           10 ETSHLGCQIVARPELDGICLALPAASR   36 (48)
Q Consensus        10 ~~SRLsCQi~v~~~ldGl~V~vp~~~~   36 (48)
                      ...||+||.....   +++|++|.+..
T Consensus        73 ~g~~L~C~~~~~~---d~~ie~~~e~~   96 (98)
T d1czpa_          73 AGYVLTCVAYPTS---DVVIQTHKEED   96 (98)
T ss_dssp             TTEEEGGGCEESS---CEEEECCCTTT
T ss_pred             CCeEEeccCEECC---CEEEEcCCccc
Confidence            4579999999875   68999997654

>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.89  E-value=0.13  Score=27.24  Aligned_cols=24  Identities=8%  Similarity=0.129  Sum_probs=19.1

Q ss_pred             CCCCccccceEeeCCCCCeEEEcCCcc
Q 043887            9 TETSHLGCQIVARPELDGICLALPAAS   35 (48)
Q Consensus         9 ~~~SRLsCQi~v~~~ldGl~V~vp~~~   35 (48)
                      ..+.||+||.....   +++|+++.++
T Consensus        70 ~~g~~L~C~~~~~~---d~~ie~~~~~   93 (98)
T d1iuea_          70 KKKYILLCTCYPKS---DCVIETHKED   93 (98)
T ss_dssp             HTTEEEGGGCEESS---CEEEECCCHH
T ss_pred             hcCeEEecCCEECC---CEEEEcCCcc
Confidence            35789999999875   5789998754

>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Putative DNA-binding domain
superfamily: Putative DNA-binding domain
family: Domains B1 and B5 of PheRS-beta, PheT
domain: Domains B1 and B5 of PheRS-beta, PheT
species: Thermus thermophilus [TaxId: 274]

Probab=80.03  E-value=0.56  Score=23.65  Aligned_cols=26  Identities=15%  Similarity=0.377  Sum_probs=20.1

Q ss_pred             CccccceEeeCCCCCeEEEcCCcchhee
Q 043887           12 SHLGCQIVARPELDGICLALPAASRNFA   39 (48)
Q Consensus        12 SRLsCQi~v~~~ldGl~V~vp~~~~n~~   39 (48)
                      +||+|++..+.  +++.|++|.+-.++.
T Consensus        30 ~~Lg~~~~~~~--~~~~V~vPs~R~Di~   55 (75)
T d1jjcb2          30 KRLGCRVEGEG--PTYRVTPPSHRLDLR   55 (75)
T ss_dssp             HHTTCEEECSS--SSEEEECCTTCTTCC
T ss_pred             HHcCCceEecC--CcEEEecchhccccC
Confidence            58999976544  589999999876654