Citrus Sinensis ID: 043893
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 419 | ||||||
| 225446567 | 414 | PREDICTED: uncharacterized protein LOC10 | 0.952 | 0.963 | 0.604 | 1e-148 | |
| 224146480 | 381 | predicted protein [Populus trichocarpa] | 0.840 | 0.923 | 0.656 | 1e-143 | |
| 449444959 | 419 | PREDICTED: uncharacterized protein LOC10 | 0.952 | 0.952 | 0.576 | 1e-142 | |
| 359485447 | 532 | PREDICTED: uncharacterized protein LOC10 | 0.763 | 0.601 | 0.601 | 1e-122 | |
| 302143434 | 374 | unnamed protein product [Vitis vinifera] | 0.763 | 0.855 | 0.601 | 1e-121 | |
| 125526842 | 473 | hypothetical protein OsI_02852 [Oryza sa | 0.773 | 0.684 | 0.563 | 1e-106 | |
| 115438542 | 479 | Os01g0614300 [Oryza sativa Japonica Grou | 0.773 | 0.676 | 0.560 | 1e-105 | |
| 242053609 | 483 | hypothetical protein SORBIDRAFT_03g02781 | 0.794 | 0.689 | 0.518 | 1e-103 | |
| 226528635 | 460 | uncharacterized protein LOC100274334 [Ze | 0.792 | 0.721 | 0.507 | 1e-102 | |
| 357130492 | 466 | PREDICTED: uncharacterized protein LOC10 | 0.799 | 0.718 | 0.533 | 1e-102 |
| >gi|225446567|ref|XP_002276383.1| PREDICTED: uncharacterized protein LOC100250486 [Vitis vinifera] gi|302143401|emb|CBI21962.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust.
Identities = 252/417 (60%), Positives = 314/417 (75%), Gaps = 18/417 (4%)
Query: 6 TINGIWKICISVSFFLGCIIFVLSLNSGRSNISLFTVRSVAISVT-------PSTGFA-- 56
TI WK+CI SF +GCII VL LN R++ +L +++ AIS+T PS F+
Sbjct: 4 TIIERWKLCICASF-IGCIILVLCLNQSRNSANLSALQNPAISITSFNQFPTPSVEFSAA 62
Query: 57 -TLI--KSDNPVEEEKLCNIFNGKWVYNGEASPLYNEAQCPFLSDQVSCQRNGRPDVEYE 113
TLI + E CNIF+G+WVY+ A P Y QCPFLSDQVSC+RNGR D YE
Sbjct: 63 STLIVFRPKAVNHNEDRCNIFDGQWVYDSRARPFYEGPQCPFLSDQVSCRRNGRSDTNYE 122
Query: 114 KWTWKAEGCEIPRFNATDMLERLKNKRVIIVGDSLNRNQWESLACLLYTAIPPSRVHVDV 173
KW+W+A+GCEIPRFNATDMLERL+ KRVIIVGDSLNRNQWESLACLLY+A+PPSR +++
Sbjct: 123 KWSWRAKGCEIPRFNATDMLERLRGKRVIIVGDSLNRNQWESLACLLYSAVPPSRAYIET 182
Query: 174 QNGVYKVLRALDYDCSVEFYWSPFLVQLDASNALGSRILRLDELSASAQKWKGADVMVFN 233
++ VYKV RA DY+CSVEFYWSPFLVQLD G+R+LRLD+LS SA+ W+GAD+MVFN
Sbjct: 183 RSSVYKVFRAKDYNCSVEFYWSPFLVQLDVKKENGTRVLRLDKLSGSARLWRGADIMVFN 242
Query: 234 TGHWWVHRGKIKAWELFEHDGKLMENLNVDEAFEIAMETWAHWIDENVDATKTMVFFRSI 293
TGHWW H+GK++AW+LF++ GKL+E + ++ A +IAM+TWA WI +D KT VFFRSI
Sbjct: 243 TGHWWAHQGKLRAWDLFQYRGKLVEEMEIESALDIAMKTWARWIRRKLDRNKTRVFFRSI 302
Query: 294 SPEHKGEQWCYNTTEPITDESYVAKFPKSMVEIVKRTIGGMSTPVKYLNITKLSQYRVDA 353
SP H G+Q CYN T+PI DES A FPKS+ EI++ TI M PV+YLNIT LSQYR DA
Sbjct: 303 SPSHTGKQ-CYNETQPILDESDAASFPKSLTEIIEGTIKAMKNPVRYLNITNLSQYRRDA 361
Query: 354 HPTIYTKKREFLIAKQQMQQETYADCSHWCLPGLPDTWNTLLYASMVLSNSRDISNS 410
HP+IY++K E ++Q ++E + DCSHWCLPGLPDTWN LLYAS+V S IS+S
Sbjct: 362 HPSIYSRKEE----ERQQRKEFHPDCSHWCLPGLPDTWNGLLYASLVFDTSGHISDS 414
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224146480|ref|XP_002326021.1| predicted protein [Populus trichocarpa] gi|222862896|gb|EEF00403.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449444959|ref|XP_004140241.1| PREDICTED: uncharacterized protein LOC101217736 [Cucumis sativus] gi|449516329|ref|XP_004165199.1| PREDICTED: uncharacterized LOC101217736 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|359485447|ref|XP_002276891.2| PREDICTED: uncharacterized protein LOC100264389 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|302143434|emb|CBI21995.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|125526842|gb|EAY74956.1| hypothetical protein OsI_02852 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
| >gi|115438542|ref|NP_001043565.1| Os01g0614300 [Oryza sativa Japonica Group] gi|54290286|dbj|BAD61231.1| leaf senescence related protein-like [Oryza sativa Japonica Group] gi|113533096|dbj|BAF05479.1| Os01g0614300 [Oryza sativa Japonica Group] gi|215740634|dbj|BAG97290.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
| >gi|242053609|ref|XP_002455950.1| hypothetical protein SORBIDRAFT_03g027810 [Sorghum bicolor] gi|241927925|gb|EES01070.1| hypothetical protein SORBIDRAFT_03g027810 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
| >gi|226528635|ref|NP_001142167.1| uncharacterized protein LOC100274334 [Zea mays] gi|194702182|gb|ACF85175.1| unknown [Zea mays] gi|413950593|gb|AFW83242.1| putative DUF231 domain containing family protein [Zea mays] | Back alignment and taxonomy information |
|---|
| >gi|357130492|ref|XP_003566882.1| PREDICTED: uncharacterized protein LOC100842643 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 419 | ||||||
| TAIR|locus:2088659 | 556 | TBL1 "AT3G12060" [Arabidopsis | 0.792 | 0.597 | 0.430 | 4.2e-79 | |
| TAIR|locus:2096094 | 475 | TBL6 "AT3G62390" [Arabidopsis | 0.778 | 0.686 | 0.421 | 6.3e-76 | |
| TAIR|locus:2170184 | 608 | TBR [Arabidopsis thaliana (tax | 0.873 | 0.601 | 0.392 | 1e-75 | |
| TAIR|locus:2179172 | 434 | TBL3 "TRICHOME BIREFRINGENCE-L | 0.782 | 0.755 | 0.398 | 1.9e-74 | |
| TAIR|locus:2082078 | 487 | ESK1 "ESKIMO 1" [Arabidopsis t | 0.801 | 0.689 | 0.406 | 2.5e-74 | |
| TAIR|locus:2063125 | 425 | TBL33 "AT2G40320" [Arabidopsis | 0.789 | 0.778 | 0.398 | 2.2e-73 | |
| TAIR|locus:2036631 | 541 | TBL2 "AT1G60790" [Arabidopsis | 0.832 | 0.645 | 0.385 | 3.6e-73 | |
| TAIR|locus:2037498 | 359 | TBL42 "TRICHOME BIREFRINGENCE- | 0.773 | 0.902 | 0.399 | 4.6e-73 | |
| TAIR|locus:2149947 | 485 | TBL5 "AT5G20590" [Arabidopsis | 0.789 | 0.682 | 0.419 | 1.2e-72 | |
| TAIR|locus:2178813 | 402 | PMR5 "AT5G58600" [Arabidopsis | 0.768 | 0.800 | 0.395 | 2.5e-72 |
| TAIR|locus:2088659 TBL1 "AT3G12060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 152/353 (43%), Positives = 218/353 (61%)
Query: 65 VEEEKLCNIFNGKWVYNGEASPLYNEAQCPFLSDQVSCQRNGRPDVEYEKWTWKAEGCEI 124
+E K C F G WV + ++ PLY C + +Q +C NGRPDV+++K WK + C +
Sbjct: 190 IESLKSCEFFEGDWVKD-DSYPLYKPGSCNLIDEQFNCISNGRPDVDFQKLKWKPKQCSL 248
Query: 125 PRFNATDMLERLKNKRVIIVGDSLNRNQWESLACLLYTAIPP-SRV------HVDVQNGV 177
PR N +LE ++ +R++ VGDSLNRN WESL C+L ++ S+V H
Sbjct: 249 PRLNGGKLLEMIRGRRLVFVGDSLNRNMWESLVCILKGSVKDESQVFEAHGRHQFRWEAE 308
Query: 178 YKVLRALDYDCSVEFYWSPFLVQ---LDASNALGSRILRLDELSASAQKWKGADVMVFNT 234
Y + DY+C+VEF+ SPFLVQ + N LRLD + S++++KGAD++VFNT
Sbjct: 309 YSFVFK-DYNCTVEFFASPFLVQEWEVTEKNGTKKETLRLDLVGKSSEQYKGADILVFNT 367
Query: 235 GHWWVHRGKIKAWELFEHDGKLMENLNVDEAFEIAMETWAHWIDENVDATKTMVFFRSIS 294
GHWW H K + ++ + L+VDEAF A+ TW W+D+NV+ K++VFFR S
Sbjct: 368 GHWWTHEKTSKGEDYYQEGSTVHPKLDVDEAFRKALTTWGRWVDKNVNPKKSLVFFRGYS 427
Query: 295 PEH-KGEQW-----CYNTTEPITDESYVAKFPKSMVEIVKRTIGGMSTPVKYLNITKLSQ 348
P H G QW C + TEPI +E+Y+ + M EI++R + GM TPV YLNIT+L+
Sbjct: 428 PSHFSGGQWNAGGACDDETEPIKNETYLTPYMLKM-EILERVLRGMKTPVTYLNITRLTD 486
Query: 349 YRVDAHPTIYTKKREFLIAKQQMQQETYADCSHWCLPGLPDTWNTLLYASMVL 401
YR DAHP+IY K++ L A++ Y DCSHWCLPG+PD+WN + YA +++
Sbjct: 487 YRKDAHPSIYRKQK--LSAEESKSPLLYQDCSHWCLPGVPDSWNEIFYAELLV 537
|
|
| TAIR|locus:2096094 TBL6 "AT3G62390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2170184 TBR [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2179172 TBL3 "TRICHOME BIREFRINGENCE-LIKE 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2082078 ESK1 "ESKIMO 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2063125 TBL33 "AT2G40320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2036631 TBL2 "AT1G60790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2037498 TBL42 "TRICHOME BIREFRINGENCE-LIKE 42" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2149947 TBL5 "AT5G20590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2178813 PMR5 "AT5G58600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00018712001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (421 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 419 | |||
| PLN02629 | 387 | PLN02629, PLN02629, powdery mildew resistance 5 | 1e-110 | |
| pfam13839 | 270 | pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera | 1e-98 | |
| pfam14416 | 55 | pfam14416, PMR5N, PMR5 N terminal Domain | 7e-22 |
| >gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 | Back alignment and domain information |
|---|
Score = 328 bits (842), Expect = e-110
Identities = 144/342 (42%), Positives = 208/342 (60%), Gaps = 20/342 (5%)
Query: 71 CNIFNGKWVYNGEASPLYNEAQCPFLSD-QVSCQRNGRPDVEYEKWTWKAEGCEIPRFNA 129
C +F G WV + ++ PLY + CP + D + +CQ GRPD +Y K+ W+ CE+PRFN
Sbjct: 53 CALFVGTWVRD-DSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNG 111
Query: 130 TDMLERLKNKRVIIVGDSLNRNQWESLACLLYTAIPPSRVHVDVQNGVYKVLRALDYDCS 189
+ L ++K K V+ VGDSL RNQWESL CL+ +++P +R + + + LDY S
Sbjct: 112 LEFLLKMKGKTVMFVGDSLGRNQWESLICLISSSVPSTRTQM-SRGDPLSTFKFLDYGVS 170
Query: 190 VEFYWSPFLVQLDASNALGSRILRLDELSASAQKWKGADVMVFNTGHWWVHRGKIKAWEL 249
+ FY +P+LV +DA G R+L+L+E+S +A W+ ADV++FNTGHWW H+G ++ W+
Sbjct: 171 ISFYKAPYLVDIDAVQ--GKRVLKLEEISGNANAWRDADVLIFNTGHWWSHQGSLQGWDY 228
Query: 250 FEHDGKLMENLNVDEAFEIAMETWAHWIDENVDATKTMVFFRSISPEHKG-EQW------ 302
E G ++++ A E A+ TWA+W+D NVD ++T VFF+SISP H +W
Sbjct: 229 IESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHYNPSEWSAGAST 288
Query: 303 ----CYNTTEPITDESYVAKFPKSMVEIVKRTIGGMSTPVKYLNITKLSQYRVDAHPTIY 358
CY T P++ +Y +P M +V I GM P L+IT LS+ R D HP+IY
Sbjct: 289 TTKNCYGETTPMSGMTYPGAYPDQM-RVVDEVIRGMHNPAYLLDITLLSELRKDGHPSIY 347
Query: 359 TKKREFLIAKQQMQQETYADCSHWCLPGLPDTWNTLLYASMV 400
+ L Q+ + ADCSHWCLPGLPDTWN L Y ++
Sbjct: 348 SGD---LSPSQRANPDRSADCSHWCLPGLPDTWNQLFYTALF 386
|
Length = 387 |
| >gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
| >gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 419 | |||
| PLN02629 | 387 | powdery mildew resistance 5 | 100.0 | |
| PF13839 | 263 | PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f | 100.0 | |
| PF14416 | 55 | PMR5N: PMR5 N terminal Domain | 99.94 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 98.24 | |
| cd01829 | 200 | SGNH_hydrolase_peri2 SGNH_peri2; putative periplas | 96.26 | |
| cd01838 | 199 | Isoamyl_acetate_hydrolase_like Isoamyl-acetate hyd | 94.52 | |
| cd01834 | 191 | SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SG | 94.11 | |
| cd01827 | 188 | sialate_O-acetylesterase_like1 sialate O-acetylest | 87.4 | |
| COG2845 | 354 | Uncharacterized protein conserved in bacteria [Fun | 84.14 | |
| cd01841 | 174 | NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfa | 82.98 | |
| cd01825 | 189 | SGNH_hydrolase_peri1 SGNH_peri1; putative periplas | 82.29 |
| >PLN02629 powdery mildew resistance 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-116 Score=886.73 Aligned_cols=328 Identities=43% Similarity=0.957 Sum_probs=299.7
Q ss_pred CcCCCCCcCccCeeeeCCCCCCCCCCCCCC-CCcccccccccCCCCCcccceeEecCCCCCCCCCHHHHHHHhcCCcEEE
Q 043893 65 VEEEKLCNIFNGKWVYNGEASPLYNEAQCP-FLSDQVSCQRNGRPDVEYEKWTWKAEGCEIPRFNATDMLERLKNKRVII 143 (419)
Q Consensus 65 ~~~~~~CD~f~G~WV~d~~~~PlY~~~~Cp-~i~~~~nC~~nGRpD~~yl~WrWqP~gC~Lprfd~~~fLe~lrgKri~F 143 (419)
..+.+.||+|+|+||+| +++|+|++++|| ||+++|||++|||||++|++|||||++|+||||||.+|||+||||||||
T Consensus 47 ~~~~~~CD~f~G~WV~D-~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~F 125 (387)
T PLN02629 47 QANQSTCALFVGTWVRD-DSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMF 125 (387)
T ss_pred CCCccccCCCCCeEecC-CCCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEE
Confidence 45678899999999999 689999999999 9999999999999999999999999999999999999999999999999
Q ss_pred EecchhHHHHHHHHHhhcccCCCCceeEeeeCCeEEEEEEccCceEEEEEecceeeeccccCCCCcceeeecccchhhhc
Q 043893 144 VGDSLNRNQWESLACLLYTAIPPSRVHVDVQNGVYKVLRALDYDCSVEFYWSPFLVQLDASNALGSRILRLDELSASAQK 223 (419)
Q Consensus 144 VGDSl~Rnq~~SLlCLL~~~~~~~~~~~~~~~~~~~~~~f~~yn~TV~~~WsPfLv~~~~~~~~~~~~l~lD~~d~~~~~ 223 (419)
|||||+|||||||+|||++++++..+.+..+++++ .|+|++||+||+||||||||+.+..+ +.++|+||+++..++.
T Consensus 126 VGDSL~RNQ~eSLvClL~~~~p~~~~~~~~~~~~~-~~~F~~yN~TV~~ywspfLV~~~~~~--~~~~l~LD~id~~a~~ 202 (387)
T PLN02629 126 VGDSLGRNQWESLICLISSSVPSTRTQMSRGDPLS-TFKFLDYGVSISFYKAPYLVDIDAVQ--GKRVLKLEEISGNANA 202 (387)
T ss_pred eccccchhHHHHHHHHhhccCCCCceeeecCCceE-EEEeccCCEEEEEEecceEEeeecCC--CceeEEecCcchhhhh
Confidence 99999999999999999999876655555566777 99999999999999999999987654 4578999999988899
Q ss_pred ccCccEEEEeccccccccccccceeeeecCCeeccccCHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCCCCC-c
Q 043893 224 WKGADVMVFNTGHWWVHRGKIKAWELFEHDGKLMENLNVDEAFEIAMETWAHWIDENVDATKTMVFFRSISPEHKGEQ-W 302 (419)
Q Consensus 224 w~~~DvLV~ntG~Ww~r~~~~~~~~~~~~g~~~~~~~~~~~Ay~~al~t~~~~v~~~~~~~~~~vffRt~SP~Hfe~g-W 302 (419)
|+++|||||||||||.+++..+++++++.|++++++|++.+||++||+||++||++++++.+++|||||+||+||+|| |
T Consensus 203 w~~~DvlVfntghWw~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~Hfe~g~W 282 (387)
T PLN02629 203 WRDADVLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHYNPSEW 282 (387)
T ss_pred hccCCEEEEeCccccCCCCeeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCcccccCCCc
Confidence 999999999999999999988888999999988999999999999999999999999999999999999999999999 8
Q ss_pred ----------ccCCcccCCCCCccCCCchhHHHHHHHHHccCCCCeEEeecccccccCccCCCCccCchhhhhhHHhhcC
Q 043893 303 ----------CYNTTEPITDESYVAKFPKSMVEIVKRTIGGMSTPVKYLNITKLSQYRVDAHPTIYTKKREFLIAKQQMQ 372 (419)
Q Consensus 303 ----------C~~~T~P~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~lLdIT~ls~~R~DgHps~y~~~~~~~~~~~~~~ 372 (419)
|+++|+|+.+++++++.+. +++++++++++++.+|+|||||+||++|||||||+|++. .+++++.+
T Consensus 283 n~gg~~~~~~C~~et~P~~~~~~~~~~~~-~~~~ve~v~~~~~~~v~lLDIT~ls~lR~DgHPs~Y~~~---~~~~~~~~ 358 (387)
T PLN02629 283 SAGASTTTKNCYGETTPMSGMTYPGAYPD-QMRVVDEVIRGMHNPAYLLDITLLSELRKDGHPSIYSGD---LSPSQRAN 358 (387)
T ss_pred CCCCCCCCCCCccCCccCcCccccCcchH-HHHHHHHHHHhcCCceEEEechhhhhcCCCCCcccccCC---CchhhccC
Confidence 8889999987777665555 566889999999999999999999999999999999754 23455566
Q ss_pred CCCCCCcccccCCCcchHHHHHHHHHHh
Q 043893 373 QETYADCSHWCLPGLPDTWNTLLYASMV 400 (419)
Q Consensus 373 ~~~~~DC~HWCLPGv~DtWNelL~~~L~ 400 (419)
+..++||+||||||||||||||||++|+
T Consensus 359 p~~~~DC~HWCLPGvpDTWNelL~a~L~ 386 (387)
T PLN02629 359 PDRSADCSHWCLPGLPDTWNQLFYTALF 386 (387)
T ss_pred CCCCCCcccccCCCCCccHHHHHHHHHh
Confidence 7788999999999999999999999997
|
|
| >PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
| >PF14416 PMR5N: PMR5 N terminal Domain | Back alignment and domain information |
|---|
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
| >cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases | Back alignment and domain information |
|---|
| >cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins | Back alignment and domain information |
|---|
| >cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
| >cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases | Back alignment and domain information |
|---|
| >COG2845 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases | Back alignment and domain information |
|---|
| >cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 419 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 6e-07
Identities = 54/415 (13%), Positives = 103/415 (24%), Gaps = 140/415 (33%)
Query: 61 SDNPVEEEKLCNIFNGKWVYNGEAS-------PLYNEAQCPFLSDQVSCQRNGRPDVEYE 113
V+ + IF W+ + L L Q+ R D
Sbjct: 172 LSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQK------LLYQIDPNWTSRSDHSSN 222
Query: 114 KWTWKAEGCEIPRFNATDMLERLKNKRVIIVGDSLNRNQWESLACLLYTAIPPSRVHVDV 173
+ + L+ ++ CLL V ++V
Sbjct: 223 -----------IKLRIHSIQAELRR---LLKSKPYEN-------CLL--------VLLNV 253
Query: 174 QNGVYKVLRALDYDCSVEFYWSPFLV-QLDASNALGSRILRLDELSASAQKWKGADVMVF 232
QN K A + C + L+ D LSA+
Sbjct: 254 QNA--KAWNAFNLSCKI-------LLTTRFKQVT--------DFLSAATTT--------- 287
Query: 233 NTGHWWVHRGKIKAWELFEHD---GKLMENLNVD------EA-----FEIAM-------- 270
H D L++ L+ E +++
Sbjct: 288 -------HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 271 -ETWAHWIDENVDATKTMVFFRSISPEHKGEQWCYNTTEPITDESY---VAKFPKSMVEI 326
TW +W N D T++ + N EP ++ FP S I
Sbjct: 341 LATWDNWKHVNCDKLTTII------------ESSLNVLEPAEYRKMFDRLSVFPPS-AHI 387
Query: 327 VKRTI----GGMSTPVKYLNITKLSQYR-VDAHP-----TIYTKKREFLIAKQQMQQ--- 373
+ + + + KL +Y V+ P +I + E + +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 374 ---ETYADCSHWCLPGLPDTW------NTLLYASMVLSNSRDISNSSHLLFDVSF 419
+ Y + L + + + + + + ++ + D F
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 419 | |||
| 4h08_A | 200 | Putative hydrolase; GDSL-like lipase/acylhydrolase | 97.47 |
| >4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00045 Score=61.78 Aligned_cols=92 Identities=16% Similarity=0.227 Sum_probs=54.6
Q ss_pred cCccEEEEeccccccccccccceeeeecCCeeccccCHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCCCCCccc
Q 043893 225 KGADVMVFNTGHWWVHRGKIKAWELFEHDGKLMENLNVDEAFEIAMETWAHWIDENVDATKTMVFFRSISPEHKGEQWCY 304 (419)
Q Consensus 225 ~~~DvLV~ntG~Ww~r~~~~~~~~~~~~g~~~~~~~~~~~Ay~~al~t~~~~v~~~~~~~~~~vffRt~SP~Hfe~gWC~ 304 (419)
..+|+||++.|..= . . ...+.|+..|+.+++.+.+. ..+++++|-+..|......
T Consensus 73 ~~pd~Vvi~~G~ND---------------~----~-~~~~~~~~~l~~ii~~l~~~--~p~~~ii~~~~~P~~~~~~--- 127 (200)
T 4h08_A 73 TKFDVIHFNNGLHG---------------F----D-YTEEEYDKSFPKLIKIIRKY--APKAKLIWANTTPVRTGEG--- 127 (200)
T ss_dssp SCCSEEEECCCSSC---------------T----T-SCHHHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCEESGG---
T ss_pred CCCCeEEEEeeeCC---------------C----C-CCHHHHHHHHHHHHHHHhhh--CCCccEEEeccCCCccccc---
Confidence 56899999998641 0 0 12567889999998887664 3356788888888653211
Q ss_pred CCcccCCCCCccCCCchhHHHHHHHHHccCCCCeEEeecccccc
Q 043893 305 NTTEPITDESYVAKFPKSMVEIVKRTIGGMSTPVKYLNITKLSQ 348 (419)
Q Consensus 305 ~~T~P~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~lLdIT~ls~ 348 (419)
..... .....-.+++++++++.++. .+.++|+...+.
T Consensus 128 --~~~~~---~~~~~~~~~n~~~~~~a~~~--~v~~iD~~~~~~ 164 (200)
T 4h08_A 128 --MKEFA---PITERLNVRNQIALKHINRA--SIEVNDLWKVVI 164 (200)
T ss_dssp --GCEEC---THHHHHHHHHHHHHHHHHHT--TCEEECHHHHHT
T ss_pred --ccccc---hhHHHHHHHHHHHHHHhhhc--ceEEEecHHhHh
Confidence 00000 00000112556666665543 688999876654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 419 | |||
| d3dc7a1 | 207 | Uncharacterized protein Lp3323 {Lactobacillus plan | 96.6 | |
| d2o14a2 | 208 | Hypothetical protein YxiM {Bacillus subtilis [TaxI | 96.16 | |
| d3bzwa1 | 248 | Uncharacterized protein BT2961 {Bacteroides thetai | 81.29 |
| >d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: SGNH hydrolase family: BT2961-like domain: Uncharacterized protein Lp3323 species: Lactobacillus plantarum [TaxId: 1590]
Probab=96.60 E-value=0.0027 Score=53.80 Aligned_cols=117 Identities=13% Similarity=0.001 Sum_probs=54.9
Q ss_pred cCccEEEEeccccccccccccceeeeecCCeeccccCHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCCCCCccc
Q 043893 225 KGADVMVFNTGHWWVHRGKIKAWELFEHDGKLMENLNVDEAFEIAMETWAHWIDENVDATKTMVFFRSISPEHKGEQWCY 304 (419)
Q Consensus 225 ~~~DvLV~ntG~Ww~r~~~~~~~~~~~~g~~~~~~~~~~~Ay~~al~t~~~~v~~~~~~~~~~vffRt~SP~Hfe~gWC~ 304 (419)
..+|+||+..|.-=..... . .+. ... ...+.|+..++.+++.+.+. ..++.+++-+.-|.....+
T Consensus 64 ~~~d~Vii~~G~ND~~~~~-~------~~~--~~~-~~~~~~~~~~~~~i~~i~~~--~~~~~ii~~~~~~~~~~~~--- 128 (207)
T d3dc7a1 64 EDADFIAVFGGVNDYGRDQ-P------LGQ--YGD-CDMTTFYGALMMLLTGLQTN--WPTVPKLFISAIHIGSDFG--- 128 (207)
T ss_dssp TTCSEEEEECCHHHHHTTC-C------CCC--TTC-CSTTSHHHHHHHHHHHHHHH--CTTSCEEEEECCCCCSCSB---
T ss_pred CCCCEEEEccCchhhhccc-C------ccc--ccc-ccHHHHHHHHHHHHHHHHHh--CCceEEEEecCCCCccccc---
Confidence 4589999998864111100 0 000 000 11234555666666666554 2344566655544443211
Q ss_pred CCcccCCCCCccCCCchhHHHHHHHHHccCCCCeEEeecccccccC-----------ccC-CCCccCc
Q 043893 305 NTTEPITDESYVAKFPKSMVEIVKRTIGGMSTPVKYLNITKLSQYR-----------VDA-HPTIYTK 360 (419)
Q Consensus 305 ~~T~P~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~lLdIT~ls~~R-----------~Dg-Hps~y~~ 360 (419)
.+.+.... .....-.+++++++++.++ ..+.++|+...+..+ +|+ ||+.-|+
T Consensus 129 -~~~~~~~~-~~~~~~~~~~~~~~~~a~~--~~~~~id~~~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~ 192 (207)
T d3dc7a1 129 -GSFSAVTN-GLGYRQSDYEAAIAQMTAD--YGVPHLSLYRDAGMTFAIPAQAAIYSVDTLHPNNAGH 192 (207)
T ss_dssp -TTBCSSCC-TTSCCHHHHHHHHHHHHHH--HTCCEEEHHHHSSCCTTSHHHHHHHBSSSSSBCHHHH
T ss_pred -cchhhhhh-hHHHHHHHHHHHHHHHHHh--ceeeeeehhhhhhcccccccchhcCCCCCCCCCHHHH
Confidence 11111111 1111112355566665544 367788887655544 466 8776543
|
| >d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|